Query 011598
Match_columns 482
No_of_seqs 141 out of 1502
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:08:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00907 2A0304 amino acid pe 100.0 1.3E-58 2.8E-63 475.1 48.0 464 1-476 16-482 (482)
2 KOG1289 Amino acid transporter 100.0 5.4E-59 1.2E-63 451.5 38.5 466 1-481 52-522 (550)
3 TIGR03428 ureacarb_perm permea 100.0 1.4E-52 3E-57 428.8 47.7 442 1-462 17-472 (475)
4 PRK15049 L-asparagine permease 100.0 1.5E-52 3.3E-57 428.9 40.8 430 2-470 33-470 (499)
5 PRK10249 phenylalanine transpo 100.0 6.4E-52 1.4E-56 421.3 39.3 427 2-470 26-457 (458)
6 PRK11387 S-methylmethionine tr 100.0 2.2E-51 4.8E-56 419.5 39.6 431 2-475 19-462 (471)
7 COG0833 LysP Amino acid transp 100.0 1.5E-51 3.2E-56 400.9 34.5 439 3-470 50-501 (541)
8 TIGR00913 2A0310 amino acid pe 100.0 1.8E-51 3.9E-56 422.0 37.1 415 2-446 7-440 (478)
9 PRK10746 putative transport pr 100.0 1.7E-50 3.8E-55 410.5 40.2 399 2-435 15-422 (461)
10 TIGR00908 2A0305 ethanolamine 100.0 1.7E-50 3.6E-55 410.8 39.9 424 1-475 11-436 (442)
11 PRK10655 potE putrescine trans 100.0 2.4E-50 5.2E-55 409.1 39.7 388 2-430 11-401 (438)
12 PRK10238 aromatic amino acid t 100.0 2.5E-50 5.5E-55 409.4 39.3 399 2-436 17-421 (456)
13 PRK11357 frlA putative fructos 100.0 1.4E-50 3.1E-55 411.4 37.4 425 2-474 13-440 (445)
14 PRK10836 lysine transporter; P 100.0 3.1E-50 6.7E-55 412.7 39.6 406 2-436 20-437 (489)
15 TIGR03813 put_Glu_GABA_T putat 100.0 9.8E-50 2.1E-54 408.0 41.2 452 3-481 4-469 (474)
16 TIGR00906 2A0303 cationic amin 100.0 9.8E-50 2.1E-54 411.7 39.5 430 2-474 33-556 (557)
17 PRK10580 proY putative proline 100.0 2E-49 4.4E-54 403.8 41.3 427 2-471 14-449 (457)
18 TIGR00905 2A0302 transporter, 100.0 1.4E-49 2.9E-54 406.5 39.9 399 2-433 12-412 (473)
19 TIGR01773 GABAperm gamma-amino 100.0 1.5E-49 3.3E-54 404.7 40.1 429 2-472 17-452 (452)
20 PRK10197 gamma-aminobutyrate t 100.0 2.3E-49 4.9E-54 401.3 40.6 392 13-438 7-405 (446)
21 PRK10644 arginine:agmatin anti 100.0 7.1E-49 1.5E-53 398.7 39.1 389 2-432 13-403 (445)
22 KOG1287 Amino acid transporter 100.0 3.1E-49 6.7E-54 383.6 33.7 380 14-433 28-412 (479)
23 PRK11049 D-alanine/D-serine/gl 100.0 9.8E-49 2.1E-53 399.5 38.9 400 2-437 25-435 (469)
24 TIGR03810 arg_ornith_anti argi 100.0 2.9E-48 6.3E-53 396.2 39.0 401 2-434 6-408 (468)
25 COG1113 AnsP Gamma-aminobutyra 100.0 1.6E-48 3.5E-53 372.0 34.2 428 6-476 22-457 (462)
26 PRK10435 cadB lysine/cadaverin 100.0 9.5E-48 2.1E-52 388.8 40.5 386 2-432 10-402 (435)
27 PRK11021 putative transporter; 100.0 1.9E-47 4.1E-52 384.4 39.6 379 1-433 3-381 (410)
28 TIGR00910 2A0307_GadC glutamat 100.0 3.6E-47 7.9E-52 389.6 40.6 442 4-474 8-466 (507)
29 TIGR00911 2A0308 L-type amino 100.0 8.3E-48 1.8E-52 396.5 35.8 396 2-436 47-446 (501)
30 TIGR00909 2A0306 amino acid tr 100.0 6.2E-47 1.3E-51 383.7 37.3 416 2-467 8-428 (429)
31 PRK15238 inner membrane transp 100.0 1.2E-44 2.5E-49 372.1 39.4 452 2-475 12-494 (496)
32 KOG1286 Amino acid transporter 100.0 3.3E-45 7.3E-50 369.8 27.9 418 2-442 35-467 (554)
33 PF13520 AA_permease_2: Amino 100.0 3.4E-44 7.3E-49 363.8 34.1 412 1-450 3-419 (426)
34 TIGR00930 2a30 K-Cl cotranspor 100.0 2.7E-43 5.9E-48 378.6 37.5 402 14-434 93-517 (953)
35 PF00324 AA_permease: Amino ac 100.0 2.2E-45 4.7E-50 376.8 17.7 412 4-437 2-431 (478)
36 COG0531 PotE Amino acid transp 100.0 2.4E-41 5.2E-46 347.2 35.9 395 4-429 20-418 (466)
37 TIGR00837 araaP aromatic amino 100.0 1.8E-26 3.8E-31 230.3 32.2 370 11-424 8-378 (381)
38 KOG2082 K+/Cl- cotransporter K 99.9 1.7E-25 3.7E-30 221.2 28.2 397 18-435 133-626 (1075)
39 KOG1288 Amino acid transporter 99.9 4.7E-21 1E-25 188.7 24.0 387 18-432 86-500 (945)
40 PHA02764 hypothetical protein; 99.9 9.2E-20 2E-24 165.0 22.8 267 2-351 17-285 (399)
41 TIGR00912 2A0309 spore germina 99.8 8.9E-18 1.9E-22 166.3 31.5 284 2-328 6-294 (359)
42 TIGR00796 livcs branched-chain 99.8 1E-17 2.2E-22 163.2 29.2 340 12-413 7-365 (378)
43 KOG2083 Na+/K+ symporter [Inor 99.8 1.8E-17 3.9E-22 162.5 20.6 395 10-433 40-445 (643)
44 PF03222 Trp_Tyr_perm: Tryptop 99.8 9.9E-15 2.2E-19 144.6 36.9 371 10-424 13-384 (394)
45 TIGR00814 stp serine transport 99.7 4.7E-14 1E-18 139.5 32.7 357 4-400 7-376 (397)
46 PRK10483 tryptophan permease; 99.7 2.3E-13 5.1E-18 133.6 35.0 371 9-424 20-392 (414)
47 PRK15132 tyrosine transporter 99.7 4.5E-13 9.8E-18 132.2 36.2 375 7-428 10-385 (403)
48 PRK09664 tryptophan permease T 99.6 1.9E-12 4.2E-17 127.0 34.5 383 9-431 18-400 (415)
49 COG0814 SdaC Amino acid permea 99.5 9.8E-11 2.1E-15 117.0 32.2 238 6-265 15-254 (415)
50 PRK13629 threonine/serine tran 99.4 1.1E-09 2.5E-14 107.7 34.9 372 4-400 23-412 (443)
51 PF03845 Spore_permease: Spore 99.2 1.8E-08 3.9E-13 98.1 27.1 271 14-328 16-290 (320)
52 KOG1303 Amino acid transporter 98.8 1.2E-05 2.5E-10 80.4 27.9 230 15-265 53-287 (437)
53 PTZ00206 amino acid transporte 98.7 5.3E-05 1.1E-09 77.5 30.1 249 6-265 66-317 (467)
54 PF01235 Na_Ala_symp: Sodium:a 98.7 4.1E-05 8.9E-10 75.5 28.0 298 3-330 23-338 (416)
55 COG3949 Uncharacterized membra 98.6 7.2E-05 1.6E-09 70.0 26.3 256 19-321 21-280 (349)
56 PLN03074 auxin influx permease 98.6 0.00011 2.3E-09 75.1 29.7 58 206-264 234-291 (473)
57 PRK11375 allantoin permease; P 98.5 0.00094 2E-08 68.6 35.1 208 34-252 62-274 (484)
58 KOG1304 Amino acid transporter 98.4 0.00062 1.3E-08 67.4 28.9 271 13-329 60-349 (449)
59 COG1457 CodB Purine-cytosine p 98.4 0.0022 4.8E-08 63.8 32.5 122 34-176 54-175 (442)
60 TIGR00835 agcS amino acid carr 98.3 0.0013 2.8E-08 65.4 28.7 295 3-329 51-364 (425)
61 PF01490 Aa_trans: Transmembra 98.2 4.1E-07 8.9E-12 91.9 0.4 355 7-405 10-376 (409)
62 PF05525 Branch_AA_trans: Bran 98.2 0.0042 9.2E-08 61.8 28.1 249 128-412 115-370 (427)
63 COG1115 AlsT Na+/alanine sympo 98.1 0.011 2.3E-07 58.3 28.0 299 3-330 67-382 (452)
64 PRK09442 panF sodium/panthothe 98.0 0.029 6.2E-07 58.0 37.1 246 48-325 94-346 (483)
65 TIGR02119 panF sodium/pantothe 97.9 0.04 8.6E-07 56.7 37.7 244 51-326 96-346 (471)
66 COG1114 BrnQ Branched-chain am 97.9 0.031 6.8E-07 54.5 30.8 241 128-399 117-360 (431)
67 PF00474 SSF: Sodium:solute sy 97.8 0.0026 5.7E-08 64.1 19.8 139 18-177 27-167 (406)
68 TIGR00813 sss transporter, SSS 97.7 0.047 1E-06 55.0 28.1 139 18-177 24-163 (407)
69 COG0591 PutP Na+/proline sympo 97.7 0.056 1.2E-06 55.8 28.5 100 5-110 45-149 (493)
70 PF01566 Nramp: Natural resist 97.7 0.042 9.1E-07 54.3 26.7 43 288-330 243-285 (358)
71 PRK11017 codB cytosine permeas 97.7 0.082 1.8E-06 53.2 36.8 183 33-248 43-226 (404)
72 PRK00701 manganese transport p 97.6 0.12 2.5E-06 52.4 29.0 45 44-92 73-119 (439)
73 COG1953 FUI1 Cytosine/uracil/t 97.5 0.16 3.4E-06 51.1 34.7 217 31-260 73-295 (497)
74 KOG1305 Amino acid transporter 97.4 0.055 1.2E-06 54.0 22.4 241 7-265 13-255 (411)
75 PF02028 BCCT: BCCT family tra 97.4 0.18 3.9E-06 51.5 25.8 338 35-403 133-484 (485)
76 COG1914 MntH Mn2+ and Fe2+ tra 97.3 0.24 5.2E-06 49.4 28.2 29 152-180 145-173 (416)
77 PRK12488 acetate permease; Pro 97.2 0.38 8.2E-06 50.5 37.1 96 64-177 131-227 (549)
78 COG0733 Na+-dependent transpor 97.2 0.29 6.3E-06 48.6 31.3 122 132-259 145-268 (439)
79 PRK09395 actP acetate permease 97.0 0.6 1.3E-05 49.1 36.3 93 64-174 133-226 (551)
80 TIGR00800 ncs1 NCS1 nucleoside 97.0 0.53 1.1E-05 48.0 33.6 76 33-114 48-123 (442)
81 PF02705 K_trans: K+ potassium 97.0 0.14 3.1E-06 52.3 20.3 223 131-389 132-366 (534)
82 TIGR02121 Na_Pro_sym sodium/pr 96.9 0.68 1.5E-05 47.9 36.3 31 296-326 316-346 (487)
83 TIGR02711 symport_actP cation/ 96.9 0.78 1.7E-05 48.2 36.8 106 49-173 117-223 (549)
84 PRK09950 putative transporter; 96.8 0.74 1.6E-05 47.2 25.0 107 286-403 391-498 (506)
85 PRK15433 branched-chain amino 96.7 0.81 1.7E-05 45.9 29.2 246 130-412 121-373 (439)
86 TIGR03648 Na_symport_lg probab 96.7 1.1 2.4E-05 47.1 36.0 103 47-168 80-183 (552)
87 PRK15419 proline:sodium sympor 96.4 1.6 3.4E-05 45.4 37.0 31 296-326 323-353 (502)
88 COG4147 DhlC Predicted symport 96.3 1.3 2.9E-05 44.2 30.2 122 35-178 80-202 (529)
89 TIGR02358 thia_cytX probable h 96.2 1.5 3.3E-05 43.8 38.6 197 33-260 30-227 (386)
90 PRK10484 putative transporter; 96.2 1.9 4.2E-05 45.0 38.5 29 298-326 327-355 (523)
91 TIGR00842 bcct choline/carniti 96.0 2.2 4.7E-05 43.3 25.5 107 285-402 344-451 (453)
92 PRK09928 choline transport pro 95.9 3.1 6.7E-05 44.1 24.8 103 285-400 397-501 (679)
93 PF02133 Transp_cyt_pur: Perme 95.6 2.9 6.4E-05 42.5 21.8 129 33-171 43-177 (440)
94 PRK03356 L-carnitine/gamma-but 95.5 3.6 7.8E-05 42.3 25.6 107 286-403 394-500 (504)
95 PF00209 SNF: Sodium:neurotran 95.4 0.38 8.3E-06 50.2 14.6 109 142-256 191-300 (523)
96 TIGR00794 kup potassium uptake 95.2 0.093 2E-06 55.2 9.0 173 130-336 167-348 (688)
97 COG4145 PanF Na+/panthothenate 94.6 4.7 0.0001 39.1 23.4 171 214-400 244-414 (473)
98 PRK10745 trkD potassium transp 93.9 0.43 9.3E-06 49.5 10.1 173 131-336 143-322 (622)
99 PLN00151 potassium transporter 93.8 0.46 1E-05 50.7 10.3 178 130-337 273-455 (852)
100 PLN00148 potassium transporter 93.8 0.63 1.4E-05 49.6 11.2 174 130-337 196-378 (785)
101 PLN00149 potassium transporter 93.5 2.8 6E-05 45.0 15.5 175 132-336 199-381 (779)
102 COG3158 Kup K+ transporter [In 93.5 0.67 1.5E-05 47.1 10.3 48 130-180 147-194 (627)
103 PLN00150 potassium ion transpo 93.1 0.38 8.2E-06 51.2 8.4 174 130-336 213-394 (779)
104 PF13906 AA_permease_C: C-term 91.0 0.5 1.1E-05 31.8 4.3 50 410-472 1-50 (51)
105 COG1292 BetT Choline-glycine b 88.3 33 0.00072 35.3 22.7 93 299-402 403-496 (537)
106 PRK15238 inner membrane transp 88.0 1.7 3.6E-05 45.2 7.6 24 450-473 472-495 (496)
107 KOG3659 Sodium-neurotransmitte 85.0 53 0.0011 34.3 17.4 127 127-259 250-377 (629)
108 PF06570 DUF1129: Protein of u 83.0 17 0.00036 32.8 10.6 16 349-364 82-97 (206)
109 COG4858 Uncharacterized membra 80.6 25 0.00054 30.5 9.9 11 353-363 101-111 (226)
110 PRK03557 zinc transporter ZitB 72.7 61 0.0013 31.3 11.9 45 383-427 54-98 (312)
111 PRK09509 fieF ferrous iron eff 57.8 72 0.0016 30.5 9.1 42 383-424 46-87 (299)
112 KOG4303 Vesicular inhibitory a 51.5 2.4E+02 0.0053 27.5 11.5 139 73-236 195-333 (524)
113 COG4025 Predicted membrane pro 47.4 1.4E+02 0.003 27.1 8.2 17 321-337 55-71 (284)
114 PRK11056 hypothetical protein; 47.3 1E+02 0.0022 24.7 6.6 10 438-447 85-94 (120)
115 PF01102 Glycophorin_A: Glycop 46.9 9 0.00019 31.1 0.8 13 462-474 83-95 (122)
116 KOG2349 Na+:iodide/myo-inosito 46.3 3.8E+02 0.0083 28.3 15.9 45 281-328 318-362 (585)
117 PRK00968 tetrahydromethanopter 44.1 29 0.00063 30.8 3.5 31 229-259 205-236 (240)
118 PF05297 Herpes_LMP1: Herpesvi 41.7 8.6 0.00019 35.6 0.0 18 342-359 12-30 (381)
119 COG0053 MMT1 Predicted Co/Zn/C 37.7 1.2E+02 0.0027 29.0 7.2 41 389-429 54-94 (304)
120 PF06609 TRI12: Fungal trichot 36.6 4.7E+02 0.01 27.9 11.8 20 451-470 276-295 (599)
121 PF11700 ATG22: Vacuole efflux 35.5 3.5E+02 0.0077 27.8 10.6 58 415-472 192-250 (477)
122 COG4060 MtrD Tetrahydromethano 34.4 54 0.0012 28.0 3.6 30 229-258 195-225 (230)
123 TIGR01197 nramp NRAMP (natural 34.2 4.9E+02 0.011 26.0 29.1 31 299-329 294-324 (390)
124 PF09930 DUF2162: Predicted tr 33.3 1.3E+02 0.0029 27.4 6.2 17 372-388 57-73 (224)
125 PF14256 YwiC: YwiC-like prote 32.8 2.8E+02 0.006 22.8 8.4 12 355-366 8-19 (129)
126 TIGR01297 CDF cation diffusion 32.5 1.3E+02 0.0027 28.1 6.4 36 390-425 32-67 (268)
127 PTZ00206 amino acid transporte 32.3 5.7E+02 0.012 26.2 12.0 55 281-342 122-176 (467)
128 PF07226 DUF1422: Protein of u 32.3 1.6E+02 0.0035 23.5 5.6 9 439-447 86-94 (117)
129 PF04235 DUF418: Protein of un 30.5 3.4E+02 0.0073 23.0 8.5 13 466-478 141-153 (163)
130 PF08693 SKG6: Transmembrane a 29.1 52 0.0011 20.8 2.0 10 462-471 30-39 (40)
131 COG1230 CzcD Co/Zn/Cd efflux s 28.3 5.3E+02 0.012 24.6 11.2 33 384-416 58-90 (296)
132 PF01545 Cation_efflux: Cation 25.3 4.7E+02 0.01 24.4 9.0 40 392-431 43-82 (284)
133 PRK06638 NADH:ubiquinone oxido 23.6 5.3E+02 0.011 22.9 10.6 10 348-357 26-35 (198)
134 PF11174 DUF2970: Protein of u 23.3 2.2E+02 0.0047 19.6 4.4 26 208-233 2-27 (56)
135 PF15099 PIRT: Phosphoinositid 22.8 43 0.00094 27.1 1.0 28 450-477 86-114 (129)
136 cd08764 Cyt_b561_CG1275_like N 22.6 3.5E+02 0.0077 24.4 6.9 19 461-479 188-206 (214)
137 PF09874 DUF2101: Predicted me 21.9 5.3E+02 0.011 23.0 7.5 21 342-362 19-40 (206)
No 1
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=1.3e-58 Score=475.12 Aligned_cols=464 Identities=44% Similarity=0.814 Sum_probs=386.6
Q ss_pred CchhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcc
Q 011598 1 MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPF 80 (482)
Q Consensus 1 ~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~ 80 (482)
.++.++++++.+.+++|++...+..++.+||.+.+++|+++++++++.+++++||++++|++||.|+|++|.++|++|+.
T Consensus 16 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~g~~~g~~ 95 (482)
T TIGR00907 16 LWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLAPPRQMPF 95 (482)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhcccccccc
Confidence 36889999999999999999999999999997689999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011598 81 ASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGG-GYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQL 159 (482)
Q Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (482)
.+|+++|.+++.+....+..+...++++...+... .+. .+..+++....+..+++++...+|++|+|..++++++
T Consensus 96 ~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~~~~~~ 171 (482)
T TIGR00907 96 ASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLT----TPGREYIPTRWHIFGIMIGIHLIHALINSLPTKWLPRITSS 171 (482)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCccccCchhhhhHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 99999999999998888888888888887766441 111 1334556667777788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccc-ccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhcccccccc
Q 011598 160 AAAWNLVGVMVLMILIPSVST-ERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNG 238 (482)
Q Consensus 160 ~~~~~~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~i 238 (482)
..+++++.++++.+..+...+ +.++.++.++++.++ ..++.+++.++..++....|+|.|+|.+++++||+||||||+
T Consensus 172 ~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~i 250 (482)
T TIGR00907 172 AAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNS-TGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVG 250 (482)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCC-CCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCChhhhc
Confidence 999998887766555444332 122233344555442 124555556678888889999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhh
Q 011598 239 PKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSS 318 (482)
Q Consensus 239 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 318 (482)
|||+..++.+..+++++..+......+|.+++.+.+. ++|+.+.+.+.++. ++...++.+.++++.+++.++.
T Consensus 251 P~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~ 323 (482)
T TIGR00907 251 PRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTT---GQPIAQIFYNALGN----KAGAIFLLCLILVTSFFCAITC 323 (482)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCC---CChHHHHHHHHhCC----chHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988777666666555555534555544321 25777776666544 2366678888999999999999
Q ss_pred hhhhhhhhhhhccCCCCCccccceecCCC-CchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 319 VTSNSRMAYAFSRDGAMPFSSFWHEVNSQ-DIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFR 397 (482)
Q Consensus 319 ~~~~sR~l~a~a~dg~lP~~~~f~~~~~~-~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 397 (482)
+++.+|++++++|||.+|++|+|+|+||| |+|+++++++.+++.++.+....+++.++.+.+..+...++.|.+++.+.
T Consensus 324 ~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~ 403 (482)
T TIGR00907 324 MTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICK 403 (482)
T ss_pred HHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999887665556678899999999999999999999988
Q ss_pred HHhccccCCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhheeeecccccccc
Q 011598 398 VTLARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGP 476 (482)
Q Consensus 398 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 476 (482)
+++||+++++||||.+++.+++++++++++.+..+..++|+..|.+..+++|..+.++...+++.++|..++||++++|
T Consensus 404 l~~~~~~~~~~~f~lg~~~~~~~~~~~~~~~~~~v~~~~P~~~p~~~~~~ny~~~~~~~~~~~~~~~~~~~~r~~~~gp 482 (482)
T TIGR00907 404 LAKGRNTIAPGPFWLGKYGFFVNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVVVFAGVLAISLVYWKYKGRKEFTGP 482 (482)
T ss_pred HHhcCCCCCCCCCcCCcchHHHHHHHHHHHHHHHhheeCCCCCCCCcccCChHhHHHHHHHHHHHHHheEeceeeccCc
Confidence 8877765678899997688999999999999999999999988888999999999999999999999999999998875
No 2
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-59 Score=451.46 Aligned_cols=466 Identities=44% Similarity=0.843 Sum_probs=428.9
Q ss_pred CchhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcc
Q 011598 1 MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPF 80 (482)
Q Consensus 1 ~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~ 80 (482)
+|+.++.+++.+....|+.++....+..+||.+..++|++++.+.+|++++.+|+++.+|++||.|.|+....+|++||+
T Consensus 52 ~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgLy~waa~lap~k~~~~ 131 (550)
T KOG1289|consen 52 LFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGLYFWAAVLAPPKYGPF 131 (550)
T ss_pred HHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcHHHHHHHhcCcchhhH
Confidence 47899999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 011598 81 ASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLA 160 (482)
Q Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (482)
.+|++||...+++....++..+..++.+...... .++ +|..+.++...+..+++++..++|+.+.|...+++.+.
T Consensus 132 ~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l----~np-~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~ 206 (550)
T KOG1289|consen 132 ASWVTGWLNYLGQATGVASITYSLAQLILGAVSL----TNP-NYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSVS 206 (550)
T ss_pred HHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhh----cCC-CCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 9999999999999999999999999999988876 444 48888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccc---ccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccc
Q 011598 161 AAWNLVGVMVLMILIPSVSTER---ASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRN 237 (482)
Q Consensus 161 ~~~~~~~~l~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ 237 (482)
....++.+++.++...+....+ ++.+..|.++.| .++|++.++++..++....|.++|+|++++++||+|||+|+
T Consensus 207 ~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N--~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~ 284 (550)
T KOG1289|consen 207 VYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNN--YSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKA 284 (550)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccc--cCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchhhh
Confidence 9999999999888887765543 445667888877 66799889999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhccC-CccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhh
Q 011598 238 GPKGIISAIGISIIFGWGYILGITFAVT-SIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGM 316 (482)
Q Consensus 238 ip~ai~~~~~~~~~~y~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 316 (482)
.||||+.++.+..++-....+.+....+ |.+.+.+++ .++|+.+.+.+.+|+. ....+..+.++..+.+..
T Consensus 285 aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~---~g~p~~~i~~~~lg~k-----~~v~~~~l~ii~~f~~gi 356 (550)
T KOG1289|consen 285 APRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSS---LGQPIVQIYYQALGKK-----GAVFLLSLIIIALFFMGI 356 (550)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCC---CCChHHHHHHHhcCCC-----ceEehhHHHHHHHHHhhH
Confidence 9999999999999999999999999996 455555443 3589999999999887 557888999999999999
Q ss_pred hhhhhhhhhhhhhccCCCCCccccceecCCC-CchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 317 SSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQ-DIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIF 395 (482)
Q Consensus 317 ~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~-~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 395 (482)
+...+.||+.|+.+|||.+|++++++|+||+ ++|.+|+++..+++.++.++.+.+...++.+.+.+....+++|..+.+
T Consensus 357 ~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~ 436 (550)
T KOG1289|consen 357 SSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIF 436 (550)
T ss_pred HHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999 999999999999999988888888999999999999999999999999
Q ss_pred HHHHhccccCCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhheeeeccccccc
Q 011598 396 FRVTLARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKG 475 (482)
Q Consensus 396 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 475 (482)
+.+..+|+..++.||+.++..++..++++.+.++++.+.++|...|++.++++|..++.+...++++++|+..+||+.++
T Consensus 437 ~rlf~~r~~f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf~li~~~~~~~k~f~g 516 (550)
T KOG1289|consen 437 CRLFFGRDDFRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLFCLIYYFVSARKWFKG 516 (550)
T ss_pred hheeecccccCCCCccccccccchHHHHHHHHHHHHHHHhCCcccCCCcccCceEEEeehhhhhhhhheeeeecceeecC
Confidence 99999888777899999888999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccCCCC
Q 011598 476 PITNIA 481 (482)
Q Consensus 476 ~~~~~~ 481 (482)
|....+
T Consensus 517 P~~~~~ 522 (550)
T KOG1289|consen 517 PIPSVL 522 (550)
T ss_pred Cccccc
Confidence 766554
No 3
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=1.4e-52 Score=428.76 Aligned_cols=442 Identities=24% Similarity=0.418 Sum_probs=345.1
Q ss_pred CchhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcc
Q 011598 1 MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPF 80 (482)
Q Consensus 1 ~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~ 80 (482)
+|+.++++++.+++++|++..++..++.+|| ..+++|+++++.+++.+++++|+++++|++||.|+|++|. +||.
T Consensus 17 ~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~----~g~~ 91 (475)
T TIGR03428 17 RYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRM----GGEV 91 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHH----cCcc
Confidence 4789999999999999999999999999999 5999999999999999999999999999999999999999 8888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc-c-chhHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 011598 81 ASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYE-A-SKYVVIAFHGGILLLHAIINSLPISILSFFGQ 158 (482)
Q Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~ 158 (482)
.||+++|.+++++....+........++..++..........++. . ..++..+++.+++++...+|++|+|..+++|+
T Consensus 92 ~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~i~~ 171 (475)
T TIGR03428 92 IGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSRVNT 171 (475)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999999876665555554444433321000000011122 1 12455677778888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhcccccccc
Q 011598 159 LAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNG 238 (482)
Q Consensus 159 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~i 238 (482)
+..+++++.++++++.++.+.+ ++....+++..+++ .++....+..+....+|+|.|+|.+++++||+||||||+
T Consensus 172 ~~~~~~i~~l~~iii~~~~~~~--~~~~~~f~~~~~~~---~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~i 246 (475)
T TIGR03428 172 IGVTCEIVGVLAVIGVLFTHAQ--RGPGVVFDTSVTGA---SPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVA 246 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCcceeeecCCCCC---CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhh
Confidence 9999999887777766655442 11112222221110 111135577788889999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhh
Q 011598 239 PKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSS 318 (482)
Q Consensus 239 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 318 (482)
|||+..++.++.++|.+..+......++.++....+ .+.| ..+.+..+.. + ...+...++++.+++.++.
T Consensus 247 Prai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p--~~~~~~~g~~----~-~~~~~~~~~i~~~~~~~~~ 316 (475)
T TIGR03428 247 PRTILTALSVSALGGGLMILGALMAAPSLTDGRLAA---EGLP--YVLSAVLDSP----W-GTVLLVDVAIAILVCTLAI 316 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCC---CchH--HHHHHHhCcH----h-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888888777664433322111 1233 3344444333 2 3345566788999999999
Q ss_pred hhhhhhhhhhhccCCCCCccccceecCCC-CchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 319 VTSNSRMAYAFSRDGAMPFSSFWHEVNSQ-DIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFR 397 (482)
Q Consensus 319 ~~~~sR~l~a~a~dg~lP~~~~f~~~~~~-~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 397 (482)
+.+.+|+++++||||.+|++++|+|+||| ++|++++++..+++.++.+...++++.|+.+.++.+...++.|.+..+..
T Consensus 317 ~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~ 396 (475)
T TIGR03428 317 QTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPL 396 (475)
T ss_pred HHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999966699999988 99999999999999887776666778999999999999999999977776
Q ss_pred HHhcccc-------CCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCC----CCCCchHHHHHHHHHHhh
Q 011598 398 VTLARKS-------FIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITS----DTLNYTPVAVCGLLILTV 462 (482)
Q Consensus 398 ~~~r~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 462 (482)
+.+|+|. .+++||+++|++++++++++++.++..+..++|+..|.+. .+++|..+++....++..
T Consensus 397 l~~~~~~~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~v~~~~P~~~~~~~~~~~~~mny~~~~~~~~~~~~~ 472 (475)
T TIGR03428 397 LLRRLRGWPRGDQTDPAGLFSLGRWGLPVNILAVVYGALMVVNLSWPRPEVYDPSGDGPIMLWSAPIFVGAVLLLG 472 (475)
T ss_pred HHHHHhccCCccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcccccchHHHHHHHHHHHHH
Confidence 6554321 3678899999999999999999999999999998877766 699999888877776654
No 4
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=1.5e-52 Score=428.88 Aligned_cols=430 Identities=16% Similarity=0.226 Sum_probs=335.0
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
+++.+++++.+. .+|+|..++..++.+||. .+++|+++++++++.+++++||++++|++||.|.|++|. +||..
T Consensus 33 ~~~~~i~~G~~I-GsGiF~~~g~~~~~aGp~-~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~----~G~~~ 106 (499)
T PRK15049 33 RQVQMIAIGGAI-GTGLFLGAGARLQMAGPA-LALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF----LGEKA 106 (499)
T ss_pred hHhHHHhhhccc-cchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH----hCcHh
Confidence 567788887665 789999999999999995 788999999999999999999999999999999999999 88889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA 161 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (482)
||.++|.+|+.+....+......+.+... +.. +. ..+...+..+++++...+|++|+|.++++|.+++
T Consensus 107 gf~~GW~~~l~~~~~~~~~~~a~~~~~~~-~~~---------~~--~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~ 174 (499)
T PRK15049 107 AYVAGWMYFINWAMTGIVDITAVALYMHY-WGA---------FG--GVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFA 174 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc---------CC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998765544333333344321 110 11 1123345667788899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccc-ccc--cccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhcccccccc
Q 011598 162 AWNLVGVMVLMILIPSVST-ERA--SAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNG 238 (482)
Q Consensus 162 ~~~~~~~l~~~i~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~i 238 (482)
++|++.++.+++.++.... .++ .....+.+..+ +.+.++.+..+++.++..++|+|.|+|.+++++||+|||+||+
T Consensus 175 ~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~-~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~i 253 (499)
T PRK15049 175 LIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITD-NGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMV 253 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccC-CCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHH
Confidence 9999888887776654321 111 11112222222 1222333335567778889999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhh
Q 011598 239 PKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSS 318 (482)
Q Consensus 239 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 318 (482)
|||+..++..+.++|++......... +++++... ++|+.+.+. . .|.++...++++.++++.+++.++.
T Consensus 254 PrAi~~~~~~i~~~yi~~~~~~~~~~-p~~~~~~~-----~sP~~~~~~-~----~g~~~~~~ii~~~ilia~~ss~ns~ 322 (499)
T PRK15049 254 PKAINSVIWRIGLFYVGSVVLLVMLL-PWSAYQAG-----QSPFVTFFS-K----LGVPYIGSIMNIVVLTAALSSLNSG 322 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheec-chhccCcC-----CCHHHHHHH-H----cCchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888 56554332 257655442 2 2445577899999999999999999
Q ss_pred hhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 319 VTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMAL-TYLGSAVAFQAMVSIATIGLYIAYALPIFFR 397 (482)
Q Consensus 319 ~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 397 (482)
+++.+|+++++||||.+| |+|+|+||+++|++|++++.++..+..+ ....+.+.++.+.++.+...++.|.+++++.
T Consensus 323 ~~~~sR~l~a~Ardg~lP--~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~ 400 (499)
T PRK15049 323 LYCTGRILRSMAMGGSAP--SFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQ 400 (499)
T ss_pred HHHHHHHHHHHHhcCCcC--HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999779999999999988766433 2345678899999999999999999999999
Q ss_pred HHhcccc----CCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhheeeecc
Q 011598 398 VTLARKS----FIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSAR 470 (482)
Q Consensus 398 ~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 470 (482)
+++||+. +.++|||.| .+|+.++++++++++......+. ..+++|.......+.++..+.|+.+||
T Consensus 401 l~~R~~~~~~~~~~~pf~~~-~~p~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (499)
T PRK15049 401 MRLRKAIKEGKAADVSFKLP-GAPFTSWLTLLFLLSVLVLMAFD------YPNGTYTIAALPIIGILLVIGWFGVRK 470 (499)
T ss_pred HHHHHhhhhcCCCCCCCccc-CccHHHHHHHHHHHHHHHHHHHc------CcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998753 235789999 78999999999988887776551 125667766666666666666655333
No 5
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=6.4e-52 Score=421.31 Aligned_cols=427 Identities=17% Similarity=0.227 Sum_probs=339.6
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
+++.+++++.+. .+|+|..++..++.+||. .+++|+++++++++.+++++|+++++|++||.|.|++|. +||.+
T Consensus 26 ~~~~~i~ig~~I-GsGif~~~g~~~~~aGp~-~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~----~g~~~ 99 (458)
T PRK10249 26 RHIQLIALGGAI-GTGLFLGIGPAIQMAGPA-VLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKY----WGPFA 99 (458)
T ss_pred hHhhhhhhhccc-chhHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH----hChHH
Confidence 567788888765 899999999999999995 899999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA 161 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (482)
||..+|.+|+.+....+......+.++...+ +..+...+..+++++...+|++|+|..+|+|.+.+
T Consensus 100 gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~ 165 (458)
T PRK10249 100 GFLSGWNYWVMFVLVGMAELTAAGIYMQYWF--------------PDVPTWIWAAAFFIIINAVNLVNVRLYGETEFWFA 165 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------CcCcHHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 9999999999986655555554555554321 11123345667788889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc-cccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccch
Q 011598 162 AWNLVGVMVLMILIPSVS-TERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPK 240 (482)
Q Consensus 162 ~~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ 240 (482)
++|++.++.+++.++... ..++.....+++..++ ...++++..++..++...+|+|.|+|.+++++||+||||||+||
T Consensus 166 ~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPr 244 (458)
T PRK10249 166 LIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRY-GGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPK 244 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCC-CCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHH
Confidence 999988777766655421 1111111122222221 11123334568899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 011598 241 GIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVT 320 (482)
Q Consensus 241 ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (482)
|+..+...+.++|++......... ++++....+ +|+.+.+.+. +.++...++.++++++.+++.++.++
T Consensus 245 ai~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~-----~p~~~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~ 313 (458)
T PRK10249 245 AVNQVVYRILLFYIGSLVVLLALY-PWVEVKSNS-----SPFVMIFHNL-----DSNVVASALNFVILVASLSVYNSGVY 313 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHheec-cccccCccC-----CcHHHHHHHc-----CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888877 444432221 5775555433 23447778889999999999999999
Q ss_pred hhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 321 SNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALT-YLGSAVAFQAMVSIATIGLYIAYALPIFFRVT 399 (482)
Q Consensus 321 ~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 399 (482)
+.+|++++++|||.+| |+|+|+||+++|++|++++.+++.+..+. ...+++.|+.+.+.++...++.|.+++.++++
T Consensus 314 ~~sR~l~a~ardg~lP--~~~~kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~ 391 (458)
T PRK10249 314 SNSRMLFGLSVQGNAP--KFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLR 391 (458)
T ss_pred HHHHHHHHHhcCCCcC--HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999998899999999999999886654 35566789999999999999999999999999
Q ss_pred hccc---cCCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhheeeecc
Q 011598 400 LARK---SFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSAR 470 (482)
Q Consensus 400 ~r~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 470 (482)
+||+ ++.++|||.| ++|+.++++++++.+..+... +.++++|..+....+.++..+.|+.++|
T Consensus 392 ~r~~~~~~~~~~p~~~~-~~p~~~~~~l~~~~~~~v~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (458)
T PRK10249 392 FRAAMRRQGRETQFKAL-LYPFGNYLCIAFLGMILLLMC-------TMDDMRLSAILLPVWIVFLFVAFKTLRR 457 (458)
T ss_pred HHHHHHhcCCCCCccCC-CccHHHHHHHHHHHHHHHHHH-------HcchHHHHHHHHHHHHHHHHHHHHheec
Confidence 9853 3456899998 999999999999998877764 3356778777766666666666655443
No 6
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=2.2e-51 Score=419.48 Aligned_cols=431 Identities=13% Similarity=0.161 Sum_probs=325.6
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
+++.+++++.+ +.+|+|..++..++.+||.+.+++|+++++++++.+++++|+++++|++||.|.|++|. +||..
T Consensus 19 ~~~~~l~ig~~-IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~----~g~~~ 93 (471)
T PRK11387 19 RHLVMLSLGGV-IGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARY----LGPAT 93 (471)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh----cChHH
Confidence 67889999977 47889999999999999866899999999999999999999999999999999999999 89999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA 161 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (482)
||..+|.+|+.+....+........++.... +. . +......++.++...+|++|+|..+++|.+.+
T Consensus 94 gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~--------p~---~---~~~~~~~~~~~~~~~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 94 GYTVAWLYWLTWTVALGSSLTAAGFCMQYWF--------PQ---V---PVWPWCLLFCALIFGLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------Cc---C---cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999987776655554444432211 10 1 22233344556788999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccc----c-cccccccceeccccCCCCC-CcchhhHHHhhHhHhHhhhcccccchhhhhccccc
Q 011598 162 AWNLVGVMVLMILIPSVST----E-RASAKFVFTHFNSDNGDGI-NSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNAD 235 (482)
Q Consensus 162 ~~~~~~~l~~~i~~~~~~~----~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~ 235 (482)
.+|++.++.+++.++.... . ++.....++++.+ +++ +++..++..++...+|+|.|+|.+++++||+||||
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~ 236 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTA---EGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPA 236 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCC---CCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh
Confidence 9999988877776643211 0 0111111222221 223 33346688888999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHh
Q 011598 236 RNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCG 315 (482)
Q Consensus 236 k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 315 (482)
||+|||+..++..+.++|++..+...... ++++....+ +|..+.+.+ .+.++...++++.++++.+++.
T Consensus 237 r~iPrAi~~~~~~~~~~y~~~~~~~~~~~-p~~~~~~~~-----~p~~~~~~~-----~g~~~~~~ii~~~~~~s~~~~~ 305 (471)
T PRK11387 237 KVIPVAIRTTIARLVIFFVGTVLVLAALI-PMQQAGVEK-----SPFVLVFEK-----VGIPYAADIFNFVILTAILSAA 305 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHheec-CccccCccC-----ChHHHHHHH-----cCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888 444443222 466444322 2555678889999999999999
Q ss_pred hhhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 316 MSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALT-YLGSAVAFQAMVSIATIGLYIAYALPI 394 (482)
Q Consensus 316 ~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~ 394 (482)
++.+++.+|+++++||||.+| |+|+|+||+++|+++++++.+.+.+..+. ...+++.++.+.++.+....+.|.+.+
T Consensus 306 ~~~~~~~sR~l~a~ardg~lP--~~f~~~~~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~ 383 (471)
T PRK11387 306 NSGLYASGRMLWSLSNEGTLP--ACFARLTKRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSIC 383 (471)
T ss_pred HHHHHHhhHHHHHHHhcCCcC--HHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999998899999999887766543332 234567789999999999999999999
Q ss_pred HHHHHhccccC------CCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhheeee
Q 011598 395 FFRVTLARKSF------IPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFS 468 (482)
Q Consensus 395 ~~~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (482)
++.+++||++. .+||||.| ..+..++++++.+++......+. + .. .........+.+++...|+.+
T Consensus 384 ~~~i~lr~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~---~---~~-~~~~~~~~~~~~~~~~~~~~~ 455 (471)
T PRK11387 384 ASHFMFRRRHLRDGKALSELAYRAP-WYPLTPILGFVLCLLACVGLAFD---P---SQ-RIALWCGIPFVALCYGAYYLT 455 (471)
T ss_pred HHHHHHHHHHHhcCCCCCCCCccCC-CccHHHHHHHHHHHHHHHHHHhh---H---HH-HHHHHHHHHHHHHHHHHHHHh
Confidence 99998887642 25799998 77888888888777666543221 1 11 112233344444455556566
Q ss_pred ccccccc
Q 011598 469 ARHWFKG 475 (482)
Q Consensus 469 ~r~~~~~ 475 (482)
+|++++-
T Consensus 456 ~~~~~~~ 462 (471)
T PRK11387 456 QRLKRNM 462 (471)
T ss_pred ccccccc
Confidence 5555443
No 7
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-51 Score=400.91 Aligned_cols=439 Identities=15% Similarity=0.226 Sum_probs=352.8
Q ss_pred hhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchh
Q 011598 3 SNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFAS 82 (482)
Q Consensus 3 ~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g 82 (482)
++.++++|+.. .+|+|...+..+..+||++++++|++.+.++.+++.+.+||++.+|.+|+...|++|. .+|-+|
T Consensus 50 Hl~MIAiGG~I-GTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rf----vdpa~G 124 (541)
T COG0833 50 HLQMIAIGGAI-GTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRF----VDPAFG 124 (541)
T ss_pred HHHHHHhcccc-ccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhh----cCchHH
Confidence 35567777644 7899999999999999999999999999999999999999999999999999999999 666699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 011598 83 WMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAA 162 (482)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 162 (482)
|..+|.||+.|....+......+..+. . |.++..+......++.++..++|.+|+|.++..+.+++.
T Consensus 125 Fa~gWnYw~~w~v~~~~El~aa~~vi~-y------------W~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 125 FALGWNYWLNWAVTLPLELTAASLVIQ-Y------------WFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhh-h------------hcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 999999999988887765555544443 2 221223445556678888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccc--cccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccch
Q 011598 163 WNLVGVMVLMILIPSVSTE--RASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPK 240 (482)
Q Consensus 163 ~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ 240 (482)
+|++.++.+++.+++...+ +......++.+.+ ...|.+++.++...+..+.|+|.|.|.+...++|.|||||++||
T Consensus 192 iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~--pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPk 269 (541)
T COG0833 192 IKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHD--PGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPK 269 (541)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecC--CCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHH
Confidence 9999999999988764332 2223333343333 23488888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CccccccCC-CCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhh
Q 011598 241 GIISAIGISIIFGWGYILGITFAVT-SIPNLLSED-NDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSS 318 (482)
Q Consensus 241 ai~~~~~~~~~~y~l~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 318 (482)
|+.-....+.++|++..+.+...+| +.+++.+++ .+...+|+...+ ++. |.+.++-+++.+++++.+++.|+.
T Consensus 270 Aik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~----~~~-Gi~~~~~imNaVIL~svlSa~NS~ 344 (541)
T COG0833 270 AIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAI----KNA-GIPVAASIMNAVILTSVLSAANSG 344 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhH----Hhc-CCccchHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999996 334444333 223345764333 232 567789999999999999999999
Q ss_pred hhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 319 VTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALT-YLGSAVAFQAMVSIATIGLYIAYALPIFFR 397 (482)
Q Consensus 319 ~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 397 (482)
+++.||++++||+||..| |+|+|+||+|+|.+|++++.+++++-.+. ....+++|+++.++++....+.|+.++++.
T Consensus 345 lYasSR~L~sLA~~g~AP--k~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~sh 422 (541)
T COG0833 345 LYASSRMLYSLAKQGKAP--KIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSH 422 (541)
T ss_pred chHHHHHHHHHHhcCCCc--hHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999984443 233445999999999999999999999999
Q ss_pred HHhcccc------CCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCchHHHHHHHHHHhhhheeeec
Q 011598 398 VTLARKS------FIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSD--TLNYTPVAVCGLLILTVSAWIFSA 469 (482)
Q Consensus 398 ~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 469 (482)
+|+||.. .++-|||.| .+|..++.+++.+.++++...+..+.|.... ++.-..+.+.+.+++.+. |.+++
T Consensus 423 irFR~A~~~QG~s~~~L~yks~-~~p~g~~~~~~~~~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~i~~y~~-yk~~~ 500 (541)
T COG0833 423 IRFRRAMKAQGRSLDELPYKSP-FGPYGPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIAIYIG-YKLYK 500 (541)
T ss_pred HHHHHHHHHcCCChhhcCccCC-CccHHHHHHHHHHHHHHHHcchheeecCCccHHHHHHHHHHHHHHHHHHHH-heeEe
Confidence 9999743 234689999 9999999999999999998887776664333 222223333334434333 55555
Q ss_pred c
Q 011598 470 R 470 (482)
Q Consensus 470 r 470 (482)
|
T Consensus 501 k 501 (541)
T COG0833 501 K 501 (541)
T ss_pred c
Confidence 5
No 8
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=1.8e-51 Score=422.04 Aligned_cols=415 Identities=16% Similarity=0.211 Sum_probs=325.0
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CChhhhHHHhhcCCCCCcc
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPT-SGGLYYWSAKLAGPKWAPF 80 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~-~Gg~y~~~~~~~~~~~g~~ 80 (482)
+++.+++++.+. .+|+|..++..++.+||.+.+++|+++++++++.+++++|+++++|+ .||.|.|+++. +||.
T Consensus 7 ~~~~~l~vg~~I-GsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~----~g~~ 81 (478)
T TIGR00913 7 RHIQMIALGGTI-GTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRF----VDPA 81 (478)
T ss_pred HHHHHHHHhccc-cchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH----cCcH
Confidence 577888888754 58999999999999999767999999999999999999999999996 55677899999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 011598 81 ASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLA 160 (482)
Q Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (482)
.||.++|.+|+.+....+......++++.... + ..+.+ ....+.+++.+.+|++|+|..+++|.+.
T Consensus 82 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~---~~~~~~~~~~~~in~~gv~~~~~~~~~~ 147 (478)
T TIGR00913 82 FGFAVGWNYWLQWLIVLPLELVTASMTIQYWT--------D---KVNPA---VWIAIFYVFIVIINLFGVKGYGEAEFWF 147 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------C---CCCHH---HHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999999999998888877777777665321 1 01111 1223455677899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccc--cccccccceeccccCCCCCCcc-----hhhHHHhhHhHhHhhhcccccchhhhhccc
Q 011598 161 AAWNLVGVMVLMILIPSVSTE--RASAKFVFTHFNSDNGDGINSK-----VYIFVLGLLMSQYTLTGYDASAHMTEETKN 233 (482)
Q Consensus 161 ~~~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~ 233 (482)
+..|+..++.+++.++..... +++....+.++.+ .+++.++ +.++..++...+|+|.|+|.+++++||+||
T Consensus 148 ~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~kn 225 (478)
T TIGR00913 148 SSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHD--PGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAAN 225 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCC--CCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcC
Confidence 999988888777665543211 1111112222222 1223332 467888999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhccCCcc--ccccCCC--CCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 011598 234 ADRNGPKGIISAIGISIIFGWGYILGITFAVTSIP--NLLSEDN--DAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAV 309 (482)
Q Consensus 234 P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 309 (482)
|+||+|||++.+...+.++|++..+......| ++ ++.++.. +..++|.... .+.. |.++...++.+.+++
T Consensus 226 P~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p-~~~~~l~~~~~~~~~~~~p~~~~-~~~~----g~~~~~~~~~~~~~~ 299 (478)
T TIGR00913 226 PRKSIPRAAKRTFWRILVFYILTLFLIGFLVP-YNDPRLLSSSSSSDSAASPFVIA-IQNH----GIKVLPHIFNAVILI 299 (478)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHheeecc-CCChhhcccccCCCcCCCcHHHH-HHHc----CCchHhHHHHHHHHH
Confidence 99999999999999999999999888877774 32 2332211 1122565322 2332 445577889999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHH
Q 011598 310 AIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTY-LGSAVAFQAMVSIATIGLYI 388 (482)
Q Consensus 310 ~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~-~~~~~~~~~l~~~~~~~~~~ 388 (482)
+.+++.++.+++.+|+++++||||.+| ++|+|+||+++|++|++++.+++.+..+.. ...++.++.+.++.+...++
T Consensus 300 s~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~k~~~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i 377 (478)
T TIGR00913 300 SVLSAANSSLYASSRTLYALAHQGLAP--KIFAYVDRRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFF 377 (478)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhCCccc--HHHHhhCCCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 999999988999999999999876543322 23567899999999999999
Q ss_pred HHHHHHHHHHHhcccc------CCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 011598 389 AYALPIFFRVTLARKS------FIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDT 446 (482)
Q Consensus 389 ~~~~~~~~~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (482)
.|.+.+++.+++||+. +.+||||.| +++..++++++.+++......+|...|.+.+.
T Consensus 378 ~y~~~~~~~i~~r~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 440 (478)
T TIGR00913 378 TWMCICLSHIRFRKAMKAQGRSLDELPYKSQ-TGPYGSYYALFFNILILIAQGYVAFAPVKFSA 440 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCCccCC-CcchHHHHHHHHHHHHHHHHHHHHHccCCCCH
Confidence 9999999999988642 346899998 89999999999999988888777666654333
No 9
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=1.7e-50 Score=410.47 Aligned_cols=399 Identities=17% Similarity=0.184 Sum_probs=318.4
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
+++.+++++++ +.+|+|..++..++.+|| +.+++|+++++++++++++++||++++|++||.|.|++|. +||.+
T Consensus 15 ~~~~~i~ig~~-IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~----~g~~~ 88 (461)
T PRK10746 15 RHIELIALGGT-IGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRY----MSPFF 88 (461)
T ss_pred HHHHHHHHHhh-hhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH----hCcHH
Confidence 46778888877 589999999999999999 5899999999999999999999999999999999999999 88889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA 161 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (482)
||.++|.+|+.+....+......+.++...++ ..+......+.+++...+|++|+|..+++|.+.+
T Consensus 89 Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p--------------~~~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~ 154 (461)
T PRK10746 89 GYLTAWSYWFMWMAVGISEITAIGVYVQFWFP--------------EMAQWIPALIAVALVALANLAAVRLYGEIEFWFA 154 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--------------CCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999877666665555566543211 1122334555677788899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc---ccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhcccccccc
Q 011598 162 AWNLVGVMVLMILIPSV---STERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNG 238 (482)
Q Consensus 162 ~~~~~~~l~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~i 238 (482)
.+|++.++++++.++.. ...++.....++++.++ ...++++..++..++..++|+|.|+|.++..+||+||||||+
T Consensus 155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~i 233 (461)
T PRK10746 155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEH-GGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTL 233 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCC-CCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHH
Confidence 99998887777765431 11111111234444331 111333346788999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhh
Q 011598 239 PKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSS 318 (482)
Q Consensus 239 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 318 (482)
|||+..++..+.++|++..+...... ++++...+ ++|+.+.+.+. |.+....+++++++++.+++.++.
T Consensus 234 P~Ai~~~~~~i~~~yv~~~~~~~~~~-p~~~~~~~-----~sp~v~~~~~~-----g~~~~~~i~~~~il~a~~s~~n~~ 302 (461)
T PRK10746 234 RSAVGKVLWRILIFYVGAIFVIVTIF-PWNEIGSN-----GSPFVLTFAKI-----GITAAAGIINFVVLTAALSGCNSG 302 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeee-CCCCCCCC-----CCcHHHHHHHh-----CchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888 56655432 25775554332 444467788999999999999999
Q ss_pred hhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHH---HhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 319 VTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMA---LTYLGSAVAFQAMVSIATIGLYIAYALPIF 395 (482)
Q Consensus 319 ~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 395 (482)
+++.+|+++++||||.+| ++|+|+||+|+|++++++..+...+.. +.....++.++++.++++...++.|.+.++
T Consensus 303 ~~~~sR~l~~~a~~g~lP--~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~ 380 (461)
T PRK10746 303 MYSCGRMLYALAKNRQLP--AAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILI 380 (461)
T ss_pred HHHHHHHHHHHHhCCCcC--HHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999988999999998765544321 112234678999999999999999999999
Q ss_pred HHHHhccccC---CCCCccccchhhHHHHHHHHHHHHHHHHhc
Q 011598 396 FRVTLARKSF---IPGPFNLGRYGIVVGWIAVLWVATISVLFS 435 (482)
Q Consensus 396 ~~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (482)
+.+++||+++ +++|||.| ++|..++++++.++.++....
T Consensus 381 ~~i~~r~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~ 422 (461)
T PRK10746 381 SQLRFRRAHKAAIASHPFRSI-LFPWANYLTMAFLICVLIGMY 422 (461)
T ss_pred HHHHHHHhccccccCCCCcCC-CccHHHHHHHHHHHHHHHHHH
Confidence 9999998753 46799988 889999988888777766553
No 10
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=1.7e-50 Score=410.79 Aligned_cols=424 Identities=17% Similarity=0.210 Sum_probs=324.4
Q ss_pred CchhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcc
Q 011598 1 MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPF 80 (482)
Q Consensus 1 ~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~ 80 (482)
++++++++++.+. +|.+...+..++.+||.+.+++|+++++++++.+++++|+++++|++||.|.|+++. +||.
T Consensus 11 ~~~~~~l~~~~~i--gg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~----~G~~ 84 (442)
T TIGR00908 11 TWQLWGIGVGYVI--SGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRA----FGPW 84 (442)
T ss_pred HHHHHHhHHHHHh--hccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH----hCcH
Confidence 3678889998765 477777778888899977789999999999999999999999999999999999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 011598 81 ASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLA 160 (482)
Q Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (482)
.||..+|.+++.+....+..+...++++...++. . +......+++++...+|++|+|..+|+|.+.
T Consensus 85 ~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-----------~---~~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~ 150 (442)
T TIGR00908 85 GGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-----------G---PGWLAALVFYIVFIGINILGVGEAAKLEFVV 150 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------C---chhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999888888888888888765421 1 1234556677778899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcch-hhHHHhhHhHhHhhhcccccchhhhhccccccccc
Q 011598 161 AAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKV-YIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGP 239 (482)
Q Consensus 161 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip 239 (482)
.+++++.++++......+ .+..++...+..+ .+++.+.+ .++..++..++|+|.|+|.+++++||+|||+||+|
T Consensus 151 ~~~~~~~l~i~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ip 225 (442)
T TIGR00908 151 TAVAIIALGVFIGAMVPH---FDSANLFNGPQTG--ASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIP 225 (442)
T ss_pred HHHHHHHHHHHHHHHhcc---CCHHHhccCCccC--CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccC
Confidence 999887765554333211 1111111111111 22344433 47888899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 011598 240 KGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSV 319 (482)
Q Consensus 240 ~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 319 (482)
||++.+...+.++|+.......... +++++.+.+ .|..+.+.+..+.. ++...++.+..+++.+++.++.+
T Consensus 226 rai~~s~~~~~~~~~~~~~~~~g~~-~~~~l~~~~-----~p~~~~~~~~~g~~---~~~~~~i~~~~~~~~~~s~~~~~ 296 (442)
T TIGR00908 226 RGLIGAILTLLALAAGILVVGPGAA-DAKELMGSN-----NPLPEALESIYGGS---TWMSQFVNLVGLFGLIASFHGII 296 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-CHHHhCCCc-----chHHHHHHHHhCCc---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877666555 566664433 56656555554421 23455677777888899999999
Q ss_pred hhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 320 TSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVT 399 (482)
Q Consensus 320 ~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 399 (482)
++.+|+++++||||.+| |+|+|+||+|+|++|++++.+++.++.+. . ..+.+.++.+....+.|.+.+.+.++
T Consensus 297 ~~~sR~l~a~ardg~lP--~~~~~~~~~~~P~~Ail~~~~i~~~~~l~--~---~~~~l~~~~~~~~~~~y~~~~~a~i~ 369 (442)
T TIGR00908 297 YGYSRQIFALSRAGYLP--ESLSKVNRKKAPVLAIVVPGVIGFGLSLT--G---QTALIILVSVFGAIISYVLSMAAHFT 369 (442)
T ss_pred HHHHHHHHHHHhcCCcc--HHHHHhCCCCCcHHHHHHHHHHHHHHHHh--c---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999995699999999999998876552 2 24567788889999999999999998
Q ss_pred hcccc-CCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhheeeeccccccc
Q 011598 400 LARKS-FIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKG 475 (482)
Q Consensus 400 ~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 475 (482)
+||++ +.+||||.| .+++.++++++.+++.++..++. +. .......+..++..++|+.++|+|+++
T Consensus 370 lr~~~p~~~rp~~~p-~~~~~~~l~~~~~~~~l~~~~~~--------~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 370 LRIRRPDMERPYRTP-GGILTPGVALVLACVALVTGFYV--------DP-RVVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred HHhcCCCCCCCccCC-CcchHHHHHHHHHHHHHHHHHHc--------Ch-HHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 88765 668999998 77888888888777766654432 11 122223444555555566666665544
No 11
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=2.4e-50 Score=409.14 Aligned_cols=388 Identities=13% Similarity=0.135 Sum_probs=308.3
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
+++++++++.+. .+|+|..++... .+|+. .+++|+++++++++.+++|+|+++++|++||.|.|++|. +||..
T Consensus 11 ~~~~~l~vg~~i-GsGif~~p~~~~-~~G~~-~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~----~G~~~ 83 (438)
T PRK10655 11 VQLTILTAVNMM-GSGIIMLPTKLA-QVGTI-SILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYA----FGKSG 83 (438)
T ss_pred HHHHHHHHHhhh-hhHHHHhHHHHH-HhhHH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHH----cCcch
Confidence 678888988776 588999987754 57885 789999999999999999999999999999999999999 88889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA 161 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (482)
||..+|.+++.+.......+....+|...+++. ..++++..++.++++++.+.+|++|+|..+|+|++..
T Consensus 84 gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~----------~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~ 153 (438)
T PRK10655 84 NFMANYTYGVSLLIANVAIAISAVGYGTELFGA----------TLSPVQICLATIGVLWLCTVANFGGARITGQISSVTV 153 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------ccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999999999988765555555566776654421 1234556667777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchH
Q 011598 162 AWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKG 241 (482)
Q Consensus 162 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~a 241 (482)
..+++.++++.+.++...+.++ +.+..++ .+. +...++..++...+|+|.|+|.+++++||+||||||+|||
T Consensus 154 ~~~l~~l~~~~i~~~~~~~~~~-----~~~~~~~--~~~-~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrA 225 (438)
T PRK10655 154 WGVIIPVVGLSIIGWFWFSPSL-----YVAAWNP--HHL-PFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIA 225 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCccc-----ccCCcCc--cCC-chHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHH
Confidence 9998888777776654432111 1111111 111 1124577788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhh
Q 011598 242 IISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTS 321 (482)
Q Consensus 242 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (482)
++.+..++.++|++......... +++++.+++ .|..+.+.+..++. ...++.+..+++.+++.++++.+
T Consensus 226 i~~~~~~~~~~Y~l~~~~~~~~~-~~~~l~~~~-----~p~~~~~~~~~g~~-----~~~~~~~~~~is~~~~~~~~~~~ 294 (438)
T PRK10655 226 VLGGTLGAAVIYIVSTNVIAGIV-PNMELANST-----APFGLAFAQMFNPT-----VGKIVMALMVMSCCGSLLGWQFT 294 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CHHHHhhcc-----chHHHHHHHHcChh-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888877 555554333 56656555554433 56678888889999999999999
Q ss_pred hhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 322 NSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGS--AVAFQAMVSIATIGLYIAYALPIFFRVT 399 (482)
Q Consensus 322 ~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 399 (482)
.+|++++++|||.+| |+|+|+||+++|+++++++.+++.++.+....+ .+.++.+.++.+....+.|.+.+++.++
T Consensus 295 ~sR~~~~~a~dg~lP--~~~~~v~~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~ 372 (438)
T PRK10655 295 IAQVFKSSADEGYFP--KIFSRVTKVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVI 372 (438)
T ss_pred HHHHHHHHhcCCchh--HHHHhhCcCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999988999999999999888765533322 4679999999999999999999999998
Q ss_pred hcccc-CCCCCccccchhhHHHHHHHHHHHHH
Q 011598 400 LARKS-FIPGPFNLGRYGIVVGWIAVLWVATI 430 (482)
Q Consensus 400 ~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (482)
+|||+ +.+||||.+ +.++.++.+.+++.
T Consensus 373 lr~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 401 (438)
T PRK10655 373 IQKVANVPPSKAKVA---NFIAFVGALYSFYA 401 (438)
T ss_pred HHhhCCCCcchhHHH---HHHHHHHHHHHHHH
Confidence 88765 456777754 45666666655543
No 12
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=2.5e-50 Score=409.39 Aligned_cols=399 Identities=18% Similarity=0.257 Sum_probs=322.0
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
++..+++++.+. .+|+|..++..++.+|| +.+++|+++++.+++++++++|+++++|.+||.|+|++|. +||..
T Consensus 17 ~~~~~i~ig~~I-GsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~----~g~~~ 90 (456)
T PRK10238 17 RHIQLIALGGAI-GTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKY----WGSFA 90 (456)
T ss_pred HHHHHHHhhccc-cchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH----cCcHH
Confidence 567788888776 78899999999999999 5899999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA 161 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (482)
||.++|.+++.+....+......++++....+ .. +......+++++...+|++|+|..+++|.+.+
T Consensus 91 gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p-----------~~---~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~ 156 (456)
T PRK10238 91 GFASGWNYWVLYVLVAMAELTAVGKYIQFWYP-----------EI---PTWVSAAVFFVVINAINLTNVKVFGEMEFWFA 156 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------cC---cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999987777776666666643211 01 22334556677889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc-ccccccccccceeccccCCCCCCcc-hhhHHHhhHhHhHhhhcccccchhhhhccccccccc
Q 011598 162 AWNLVGVMVLMILIPSV-STERASAKFVFTHFNSDNGDGINSK-VYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGP 239 (482)
Q Consensus 162 ~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip 239 (482)
++|+..++++++.++.. ....+.....++++.+ .+++.++ ..++..++..++|+|.|+|..++++||+||||||+|
T Consensus 157 ~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iP 234 (456)
T PRK10238 157 IIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWD--QGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIP 234 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccccccCC--CCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHH
Confidence 99999887776654332 1111111112233222 2334333 345777788899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 011598 240 KGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSV 319 (482)
Q Consensus 240 ~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 319 (482)
||+..++..+.+.|+.......... |++++.++ ++|+.+.+.+ . |.++...++++.++++.+++.++.+
T Consensus 235 rAi~~~~~~i~~~y~~~~~~~~~~~-p~~~l~~~-----~sP~~~~~~~-~----g~~~~~~i~~~~i~~~~~s~~~~~~ 303 (456)
T PRK10238 235 KATNQVIYRILIFYIGSLAVLLSLM-PWTRVTAD-----TSPFVLIFHE-L----GDTFVANALNIVVLTAALSVYNSCV 303 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheec-ChhccCCC-----CCcHHHHHHH-c----CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877776666 66665332 2677554432 2 3445677889999999999999999
Q ss_pred hhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 320 TSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALT-YLGSAVAFQAMVSIATIGLYIAYALPIFFRV 398 (482)
Q Consensus 320 ~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 398 (482)
++.+|++++++|||.+| |+|+|+||+++|++|++++.+++.+..+. ...+++.++.+.++++...++.|.+++++.+
T Consensus 304 ~~~sR~l~a~ardg~lP--~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l 381 (456)
T PRK10238 304 YCNSRMLFGLAQQGNAP--KALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHM 381 (456)
T ss_pred HHHHHHHHHHHhCCCcc--HHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999998899999999999998876554 3566789999999999999999999999999
Q ss_pred HhccccC---CCCCccccchhhHHHHHHHHHHHHHHHHhcC
Q 011598 399 TLARKSF---IPGPFNLGRYGIVVGWIAVLWVATISVLFSL 436 (482)
Q Consensus 399 ~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (482)
++||++. ++++||.| ++|+.++++++++.+..+...+
T Consensus 382 ~~r~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~ 421 (456)
T PRK10238 382 KFRRAKQEQGVVTRFPAL-LYPLGNWICLLFMAAVLVIMLM 421 (456)
T ss_pred HHHHHHHhcCCCCCCcCC-CccHHHHHHHHHHHHHHHHHHH
Confidence 9988652 24566766 8999999999999988887654
No 13
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=1.4e-50 Score=411.38 Aligned_cols=425 Identities=14% Similarity=0.163 Sum_probs=320.9
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccC-hhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcc
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGG-PISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPF 80 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G-~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~ 80 (482)
+++++++++.+ +.+|+|..++.....+| +...+++|+++++++++.+++|+|+++++|++||.|.|++++ +||.
T Consensus 13 ~~~~~l~vg~~-ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~----~g~~ 87 (445)
T PRK11357 13 WAVLAIAVGTT-VGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNA----GSRP 87 (445)
T ss_pred HHHHHHHHHhh-eechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHh----cCCh
Confidence 67889999987 48899999998776655 434688999999999999999999999999999999999999 8999
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011598 81 ASWMTGWFNIV-GQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQL 159 (482)
Q Consensus 81 ~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (482)
.||..+|..+. .+....+..+....+|+....+ + ++.....+..+++.++..+|++|+|..+|+|++
T Consensus 88 ~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~----------~--~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~ 155 (445)
T PRK11357 88 LAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP----------I--DPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTL 155 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------C--chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999997553 3444555566666666654211 1 122334566667777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccc
Q 011598 160 AAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGP 239 (482)
Q Consensus 160 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip 239 (482)
+++.|++.++++++.++.....++..+. .+... +..+...++..++...+|+|.|+|.+++++||+||||||+|
T Consensus 156 ~~~~~~~~l~~~ii~g~~~~~~~~~~~~--~~~~~----~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP 229 (445)
T PRK11357 156 ITIAKIIPFTIVIGLGIFWFKAENFAAP--TTTAI----GATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMP 229 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCC--Ccccc----cccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccch
Confidence 9999999888777776543221111000 00000 01112355788889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 011598 240 KGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSV 319 (482)
Q Consensus 240 ~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 319 (482)
||+..++.++.++|++.+....... |++++.+++ .|..+.+... + ..|. +...++.+..+++.+++.++.+
T Consensus 230 ~Ai~~~~~i~~~~Y~l~~~~~~~~~-~~~~l~~~~-----~p~~~~~~~~-~-~~g~-~~~~~~~~~~~~~~~~~~~~~~ 300 (445)
T PRK11357 230 RALIGSCLLVLVLYTLLALVISGLM-PFDKLANSE-----TPISDALTWI-P-ALGS-TAGIFVAITAMIVILGSLSSCV 300 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcCC-----chHHHHHHHH-H-hcch-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887 666665443 4665554332 1 1121 2556677788889999999999
Q ss_pred hhhhhhhhhhccCCCCCccccceecCCC-CchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 320 TSNSRMAYAFSRDGAMPFSSFWHEVNSQ-DIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRV 398 (482)
Q Consensus 320 ~~~sR~l~a~a~dg~lP~~~~f~~~~~~-~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 398 (482)
.+.+|++++++|||.+| |+|+|+||| |+|+++++++.+++.++.+. ..++.+.+..+....+.|.+...+.+
T Consensus 301 ~~~sR~~~a~ardg~lp--~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~a~i 373 (445)
T PRK11357 301 MYQPRLEYAMAKDNLFF--KCFGHVHPKYNTPDVSIILQGALGIFFIFV-----SDLTSLLGYFTLVMCFKNTLTFGSII 373 (445)
T ss_pred HhhhhHHHHHHhcCCch--HHHHHhCCCCCCCHHHHHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 999999988 99999999999999876652 34667788888888899999999999
Q ss_pred HhccccCCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhheeeecccccc
Q 011598 399 TLARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFK 474 (482)
Q Consensus 399 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 474 (482)
++||+++.+||||.| ..+..++++++.++++....... ++.. .......+.+++...|+.++||+++
T Consensus 374 ~lr~~~~~~~~~k~p-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~g~~~y~~~~~~~~~ 440 (445)
T PRK11357 374 WCRKRDDYKPLWRTP-AFGLMTTLAIASSLILVASTFVW-------APIP-GLICAVIVIATGLPAYAFWAKRSRQ 440 (445)
T ss_pred eeecCCCCCCCcccC-CchHHHHHHHHHHHHHHHHHHHc-------CcHH-HHHHHHHHHHHhhhHHhheechhhh
Confidence 888887777899999 78888888887777766543332 1111 1233444555555556555555443
No 14
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=3.1e-50 Score=412.67 Aligned_cols=406 Identities=14% Similarity=0.178 Sum_probs=311.9
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
+++.+++++.+. .+|+|..++..++.+||.+.+++|+++++++++.+++|+|+++++|++||.|.|+++. +||..
T Consensus 20 ~~~~~l~vG~~I-GsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~----~g~~~ 94 (489)
T PRK10836 20 RHLTMIAIGGSI-GTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNY----VEEGF 94 (489)
T ss_pred HHHHHHHHhhhh-hhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH----cChHH
Confidence 577888888765 8899999999999999965899999999999999999999999999999999999999 88889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA 161 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (482)
||..+|.+++.+....+. +....++....+. + ..+......+.+++...+|++|+|..+++|.+++
T Consensus 95 gf~~Gw~~~~~~~~~~a~-~~~a~~~~~~~~~-------~------~~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~ 160 (489)
T PRK10836 95 GFALGWNYWYNWAVTIAV-DLVAAQLVMSWWF-------P------DTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFS 160 (489)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcC-------C------CCchHHHHHHHHHHHHHHHHHcchhhhhhHHHHH
Confidence 999999999886555443 3333333222110 0 0112233455666778999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccc--ccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccc
Q 011598 162 AWNLVGVMVLMILIPSVST--ERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGP 239 (482)
Q Consensus 162 ~~~~~~~l~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip 239 (482)
..|+..++.+++.++.... .....+..++++.++ ..++.++..++..+....+|+|.|+|.+++++||+||||||+|
T Consensus 161 ~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iP 239 (489)
T PRK10836 161 LIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIG-DAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIP 239 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCC-CCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHH
Confidence 9999888877766544311 111111122333221 1123333344555566678999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCcccc---ccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhh
Q 011598 240 KGIISAIGISIIFGWGYILGITFAVTSIPNL---LSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGM 316 (482)
Q Consensus 240 ~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 316 (482)
||+..++..+.++|++.........| .++. .++..+..++|....+. +. +.++...+++++++++.+++.|
T Consensus 240 rAi~~~~~~v~~~Yvl~~~~~~~~vp-~~~~~~~~~~~~~~~~sp~~~~~~----~~-g~~~~~~ii~~~il~a~~~~~n 313 (489)
T PRK10836 240 RAVRQVFWRILLFYVFAILIISLIIP-YTDPSLLRNDVKDISVSPFTLVFQ----HA-GLLSAAAVMNAVILTAVLSAGN 313 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecC-CCChhhhccccccccCCcHHHHHH----Hc-CChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888884 3322 11111112356544432 22 3344677889999999999999
Q ss_pred hhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 317 SSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALT-YLGSAVAFQAMVSIATIGLYIAYALPIF 395 (482)
Q Consensus 317 ~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 395 (482)
+.+++.+|+++++||||.+| ++|+|+||+|+|++|++++.+++.+..+. ....+..++++.++.+...++.|.+.++
T Consensus 314 ~~~~~~sR~l~a~Ardg~lP--~~~~kv~~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~ 391 (489)
T PRK10836 314 SGMYASTRMLYTLACDGKAP--RIFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAI 391 (489)
T ss_pred HHHHHHHHHHHHHHcCCCcC--HHHHhhCCCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 99999998899999999999998876653 2344567899999999999999999999
Q ss_pred HHHHhccc-----cCC-CCCccccchhhHHHHHHHHHHHHHHHHhcC
Q 011598 396 FRVTLARK-----SFI-PGPFNLGRYGIVVGWIAVLWVATISVLFSL 436 (482)
Q Consensus 396 ~~~~~r~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (482)
+.+++||+ ++. +||||.| ..|..++++++.+++++....+
T Consensus 392 a~l~~R~~~~~~~~~~~~~p~~~p-~~p~~~~~~~~~~~~~~~~~~~ 437 (489)
T PRK10836 392 SHYRFRRGYVLQGHDLNDLPYRSG-FFPLGPIFAFVLCLIITLGQNY 437 (489)
T ss_pred HHHHHHHHHHhcCCCcCCCCCcCC-CccHHHHHHHHHHHHHHHHHHH
Confidence 99999885 233 4799999 8889999998888887775443
No 15
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=9.8e-50 Score=407.97 Aligned_cols=452 Identities=16% Similarity=0.189 Sum_probs=328.6
Q ss_pred hhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHH-HHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 3 SNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFT-LFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 3 ~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~-l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
+.+.+.+.+.....++...+.. +..|+ +.+++|++++++. ++.+++++|+++++|++||.|.|++|+ +||.+
T Consensus 4 ~~~~l~~~~~~~v~~~~~~~~~--a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a----~G~~~ 76 (474)
T TIGR03813 4 TVVTLAIMNITAVVSLRGLPAE--AEYGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEA----FGARW 76 (474)
T ss_pred cHHHHHHHHHHHHHHhhcchHH--HHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhh----cChhH
Confidence 3455555555555555555433 34788 4888999999865 699999999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGK-NGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLA 160 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (482)
||..+|.+|+.+....+.........+. .+.. .. .......+.+....+.++++++.+.+|++|+|.++|+|++.
T Consensus 77 gf~~gw~~w~~~~~~~p~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~ 152 (474)
T TIGR03813 77 GFLAIFMLWAQVTIWFPTVLTFGAVSLA-FIGP---EATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWG 152 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC---ccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 9999999999976554433222222222 1111 00 00112223344445666677788899999999999999987
Q ss_pred HHH-HHHHHHHHHHHhhhcc--cccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccc
Q 011598 161 AAW-NLVGVMVLMILIPSVS--TERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRN 237 (482)
Q Consensus 161 ~~~-~~~~~l~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ 237 (482)
..+ ++++++++++.++... +.+...+..+++..+ +..++. +...+ ...+|+|.|+|.++..+||+||||||
T Consensus 153 ~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p-~~~~~~----~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~ 226 (474)
T TIGR03813 153 GIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFP-DFTNFD----NVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKN 226 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCC-Cccccc----cHHHH-HHHHHHHhchhHhHHHHHhccCcccc
Confidence 655 4555555555444321 111111111111111 001111 12222 24578999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhh
Q 011598 238 GPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMS 317 (482)
Q Consensus 238 ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 317 (482)
+|||++.+..++.++|++.+++..... ++++.... .+..+.+.+..+.. |.++...++.+..+++.+++.++
T Consensus 227 iPrAi~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~~l~~~~~ 298 (474)
T TIGR03813 227 YPIAILIAALGTVLIFVLGTLAIAFII-PREDISLT------QSLLVAFDNAFHWA-GLSWLGPILAFALAIGVLAGVVT 298 (474)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcc-CHhhcccc------ccHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888 44444221 22223343433332 44556667788888899999999
Q ss_pred hhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhh---chHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 318 SVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYL---GSAVAFQAMVSIATIGLYIAYALPI 394 (482)
Q Consensus 318 ~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~ 394 (482)
++.+.+|++++++|||.+| |+|+|+||+|+|+++++++.+++.++.+... ..++.++.+.++.+....+.|.+.+
T Consensus 299 ~~~~~sR~~~a~ardg~lP--~~~~kv~k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~ 376 (474)
T TIGR03813 299 WVAGPSSGMLAVAKAGYLP--TFFQKTNKNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMF 376 (474)
T ss_pred HHHHHHHHHHHHhhcCCCC--HHHhccCCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999779999999999988765443222 2346799999999999999999999
Q ss_pred HHHHHhcccc-CCCCCccccc--h-hhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhheeeecc
Q 011598 395 FFRVTLARKS-FIPGPFNLGR--Y-GIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSAR 470 (482)
Q Consensus 395 ~~~~~~r~~~-~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 470 (482)
++.+++|+|+ +++||||.|. + .+++++++.+++++..++.++|+..+.+.++++|....++...++..++|..++|
T Consensus 377 ~a~i~lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ny~~~~~~~~~~~~~~~~~~~~~ 456 (474)
T TIGR03813 377 ASAIYLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTGSPTRYVGLLIGLAALFVTAPFLIYAR 456 (474)
T ss_pred HHHHHHHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHheeEeCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888544 7789999963 2 4679999999999999999999999999999999999988888888888888776
Q ss_pred cc--cccccCCCC
Q 011598 471 HW--FKGPITNIA 481 (482)
Q Consensus 471 ~~--~~~~~~~~~ 481 (482)
|| ++++.++.|
T Consensus 457 ~~~~~~~~~~~~~ 469 (474)
T TIGR03813 457 RKPHWRDPNSNFE 469 (474)
T ss_pred hchhhcCcccccc
Confidence 66 566655554
No 16
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=9.8e-50 Score=411.73 Aligned_cols=430 Identities=20% Similarity=0.231 Sum_probs=341.0
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhc-cccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcc
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGL-NFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPF 80 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~-~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~ 80 (482)
+|+++++++.+ +.+|+|..++... +.+||. .+++|+++++.+++.+++|+|+++++|++||.|.|+++. +||.
T Consensus 33 ~~l~~l~ig~v-iGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~----~G~~ 106 (557)
T TIGR00906 33 WDLMALGIGST-IGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVT----VGEL 106 (557)
T ss_pred HHHHHHHhhhh-hcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHH----hCcH
Confidence 68899999987 6899999999876 568995 899999999999999999999999999999999999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCC-Ccccc--hhHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 011598 81 ASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGG-KNGG-GYEAS--KYVVIAFHGGILLLHAIINSLPISILSFF 156 (482)
Q Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~--~~~~~~i~~~~~~~~~~l~~~g~~~~~~~ 156 (482)
+||+.+|.+++.|....+..+..+++|+..++....+. ..+. +...+ ......++++++++.+.+|++|+|.++|+
T Consensus 107 ~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~v 186 (557)
T TIGR00906 107 WAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWV 186 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHHHH
Confidence 99999999999998888888888899988876421100 0000 00000 01223456677778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcc-hhhHHHhhHhHhHhhhcccccchhhhhccccc
Q 011598 157 GQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSK-VYIFVLGLLMSQYTLTGYDASAHMTEETKNAD 235 (482)
Q Consensus 157 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~ 235 (482)
|++++.+|++.++++++.++.+.+.+ ++......+ .+++.+. ..+++.+...++|+|.|+|.+++++||+|||+
T Consensus 187 ~~i~~~iki~~l~~~iv~g~~~~~~~---~~~~~~~~~--~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~ 261 (557)
T TIGR00906 187 NKIFTAINILVLLFVIIAGFTKADVA---NWSITEEKG--AGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ 261 (557)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhCCch---hcccccccc--CCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc
Confidence 99999999999888888887654321 111111111 2234443 35688899999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHh
Q 011598 236 RNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCG 315 (482)
Q Consensus 236 k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 315 (482)
||+|||++.++++++++|++.+++..... +++++ +.+ .|++..+. . .|.++...++.+..+.+.+++.
T Consensus 262 r~iP~aii~sl~i~~vlY~lv~~~l~~~v-p~~~l-~~~-----~p~~~a~~-~----~g~~~~~~ii~~~~~~~~~~sl 329 (557)
T TIGR00906 262 RAIPIGIVTSLLVCFVAYFLMSAALTLMM-PYYLL-DPD-----APFPVAFE-Y----VGWGPAKYIVAVGALCGMSTSL 329 (557)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhccc-cHHHh-CcC-----cHHHHHHH-H----cCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 55544 222 45544432 2 2444577788999999999999
Q ss_pred hhhhhhhhhhhhhhccCCCCCccccceecCCC-CchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 316 MSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQ-DIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPI 394 (482)
Q Consensus 316 ~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~-~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 394 (482)
++.+++.+|++++|||||.+| ++|+|+||| ++|+++++++++++.++.+.. .++.+.++.+.+.++.|.+.+
T Consensus 330 ~~~~~~~sRil~amarDGlLP--~~fakv~~r~~tP~~Ail~~~iv~~il~~~~-----~~~~l~~l~sig~ll~y~lv~ 402 (557)
T TIGR00906 330 LGGMFPLPRVIYAMARDGLLF--KWLAQINSKTKTPINATVVSGAIAALMAFLF-----DLKALVDLLSIGTLLAYSLVA 402 (557)
T ss_pred HHHHHHHHHHHHHHHcCCCcc--HHHhccCCCCCCcHHHHHHHHHHHHHHHHHc-----CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999988 999999999999998766632 256788889999999999998
Q ss_pred HHHHHhcccc----------------------------------------------------------------------
Q 011598 395 FFRVTLARKS---------------------------------------------------------------------- 404 (482)
Q Consensus 395 ~~~~~~r~~~---------------------------------------------------------------------- 404 (482)
++.+++|+++
T Consensus 403 ~~~l~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (557)
T TIGR00906 403 ACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLF 482 (557)
T ss_pred HHHHHhhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHH
Confidence 8888887432
Q ss_pred ---------------CC--CCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhheee
Q 011598 405 ---------------FI--PGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIF 467 (482)
Q Consensus 405 ---------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (482)
+. +|+||.| ..|.++.+++..+++++.-. ....+..+.++..++.++|+.
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~f~~p-~~p~~p~~~i~~~~~l~~~l------------~~~~~~~~~~w~~~g~~~y~~ 549 (557)
T TIGR00906 483 LVLFLLVVLTIWRQPQNKQKVAFKVP-LVPFLPALSILINIFLMVQL------------DADTWVRFAIWMAIGFLIYFL 549 (557)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCC-CchHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHHHHhh
Confidence 11 4567777 77777777777777755532 122577888889999999999
Q ss_pred ecccccc
Q 011598 468 SARHWFK 474 (482)
Q Consensus 468 ~~r~~~~ 474 (482)
|.+||.+
T Consensus 550 yg~~~s~ 556 (557)
T TIGR00906 550 YGIRHSL 556 (557)
T ss_pred hhhhccC
Confidence 9988865
No 17
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=2e-49 Score=403.77 Aligned_cols=427 Identities=15% Similarity=0.214 Sum_probs=326.7
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
+++++++++.+. .+|+|..++..++.+||. .+++|+++++..++.+++++|+++++|++||.|.|++|. +||..
T Consensus 14 ~~~~~i~vg~~I-G~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~----~G~~~ 87 (457)
T PRK10580 14 RHIRFMALGSAI-GTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQEN----LGPLA 87 (457)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH----cCcHH
Confidence 578888999874 889999999999999995 899999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA 161 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (482)
||..+|.+++.+....+......+.+....++ .. +.....++.+++...+|++|+|..+++|.+++
T Consensus 88 gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~---~~~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 88 GYITGWTYCFEILIVAIADVTAFGIYMGVWFP-----------TV---PHWIWVLSVVLIICAVNLMSVKVFGELEFWFS 153 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CC---ChHHHHHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 99999999998866555555555555543211 01 12223445567788999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh---cccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhcccccccc
Q 011598 162 AWNLVGVMVLMILIPS---VSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNG 238 (482)
Q Consensus 162 ~~~~~~~l~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~i 238 (482)
.+|+..++++++.++. ....+.......++..++ ...++.+..++..++...+|+|.|+|.+++++||+|||+||+
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~i 232 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSN-GGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSI 232 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCC-CCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHH
Confidence 9999988877665532 111111111111221121 122443345788899999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhh
Q 011598 239 PKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSS 318 (482)
Q Consensus 239 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 318 (482)
|||++.+.+.+.++|++......... |++++... +.|....+ +.. |.++...++.+..+.+.+++.++.
T Consensus 233 PrAi~~~~~~~~~~y~~~~~~~~~~~-p~~~i~~~-----~~p~~~~~-~~~----g~~~~~~~~~~~~~~~~~~~~~~~ 301 (457)
T PRK10580 233 PRAINSVPMRILVFYVGTLFVIMSIY-PWNQVGTN-----GSPFVLTF-QHM----GITFAASILNFVVLTASLSAINSD 301 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheec-ccCCCCcc-----CChHHHHH-HHc----CChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988887777 55555332 25654333 332 445567788888899999999999
Q ss_pred hhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 319 VTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALT-YLGSAVAFQAMVSIATIGLYIAYALPIFFR 397 (482)
Q Consensus 319 ~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 397 (482)
+++.+|++++++|||.+| |+|+|+||+|+|++|++++.+...+.... ...+.+.++.+.++++....+.|.+.+++.
T Consensus 302 ~~~~sR~~~~~ardg~lP--~~~~kv~~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~ 379 (457)
T PRK10580 302 VFGVGRMLHGMAEQGSAP--KIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQ 379 (457)
T ss_pred HHHHHHHHHHHHhCCCcC--HHHHhhCCCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999998899999999998765553322 234567899999999999999999999999
Q ss_pred HHhcccc----CCCCCccccchhhHHHHHHHHHHHHHHHHh-cCCCCCCCCCCCCCchHHHHHHHHHHhhhheeeeccc
Q 011598 398 VTLARKS----FIPGPFNLGRYGIVVGWIAVLWVATISVLF-SLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARH 471 (482)
Q Consensus 398 ~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 471 (482)
+++||+. ++++|||.| ++++.++++++++.+.+... ..|. ..........++++..+.|..++|+
T Consensus 380 ~~lr~~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~p~--------~~~~~~~~~~~~~~~~~~y~~~~~~ 449 (457)
T PRK10580 380 IAFRRRLPPEEVKALKFKVP-GGVATTIGGLIFLVFIIGLIGYHPD--------TRISLYVGFAWIVLLLIGWMFKRRH 449 (457)
T ss_pred HHHHHHHHhcCCCCCCcccC-CccHHHHHHHHHHHHHHHHHHHCcc--------HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998763 234689999 88999999999888877765 3331 1223344444555555556555443
No 18
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=1.4e-49 Score=406.55 Aligned_cols=399 Identities=16% Similarity=0.232 Sum_probs=319.3
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CChhhhHHHhhcCCCCCcc
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPT-SGGLYYWSAKLAGPKWAPF 80 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~-~Gg~y~~~~~~~~~~~g~~ 80 (482)
+++++++++.+. .+|+|..++...+.+||...+++|+++++.+++.+++|+|+++++|+ +||.|.|++|. +||.
T Consensus 12 ~~~~~l~ig~vI-GsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~----~G~~ 86 (473)
T TIGR00905 12 FALTALVIGSMI-GSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREG----FGPY 86 (473)
T ss_pred HHHHHHHHHHHH-hHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhH----cccc
Confidence 677888888774 67799999998888888657899999999999999999999999999 99999999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 011598 81 ASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLA 160 (482)
Q Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (482)
.||..+|.+|+.+.......+....+++..+++. .. ..++++..+.+++++++...+|++|+|..+|+|.+.
T Consensus 87 ~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~----~~----~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~ 158 (473)
T TIGR00905 87 IGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPL----FG----SGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTIT 158 (473)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hc----CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999999999887666666666666777666542 11 012345566777788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccch
Q 011598 161 AAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPK 240 (482)
Q Consensus 161 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ 240 (482)
+..|++.++++++.++...+.++.. .++.+.+..+..+...++..++...+|+|.|+|.+++++||+|| |||+||
T Consensus 159 ~~~~l~~l~~~ii~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPr 233 (473)
T TIGR00905 159 TIAKLIPLFLFIIIGWFWFKLDLFT----ADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGK 233 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhcc----cccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchH
Confidence 9999998888888776543211110 11111001112223356888899999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCc-HHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 011598 241 GIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYA-IAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSV 319 (482)
Q Consensus 241 ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 319 (482)
++..+..++.++|++......... +++++.+.+ .| ..+...+..+. +...++.+..+++.+++.++.+
T Consensus 234 ai~~~~~i~~~~Yil~~~~~~~~~-~~~~l~~~~-----~p~~~~~~~~~~g~-----~~~~~i~i~~~is~~~~~~~~~ 302 (473)
T TIGR00905 234 ATVLGTLGALVIYILITLLSLGVL-PQQELANLP-----NPSMAAVLEMIVGK-----WGAVLISLGLIISVLGSLLSWT 302 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc-CHHHHhhCC-----CchHHHHHHHHhCh-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988877 666665443 45 44444444333 3677888999999999999999
Q ss_pred hhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 320 TSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVT 399 (482)
Q Consensus 320 ~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 399 (482)
.+.+|++++|+|||.+| |+|+|+||||+|+++++++.+++.++.+......+.++.+.++.+...++.|.+.+++.++
T Consensus 303 ~~~sR~~~amardg~lP--~~~~~v~~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~ 380 (473)
T TIGR00905 303 MLAAEVPFSAAKDGLFP--KIFGRVNKNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLK 380 (473)
T ss_pred HHHHHHHHHHHhCCChh--HHHHhhCccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999887665445556789999999999999999999999999
Q ss_pred hccccCCCCCccccchhhHHHHHHHHHHHHHHHH
Q 011598 400 LARKSFIPGPFNLGRYGIVVGWIAVLWVATISVL 433 (482)
Q Consensus 400 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (482)
+|||++.++ .+.| +.++++.++.+++.+....
T Consensus 381 lr~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 412 (473)
T TIGR00905 381 LAKVGTYPK-IKNR-KALIVGVIACVYSIWLLYA 412 (473)
T ss_pred HHHcCCccc-cccc-hHHHHHHHHHHHHHHHHHH
Confidence 887652222 2223 6788888888888876554
No 19
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=1.5e-49 Score=404.71 Aligned_cols=429 Identities=16% Similarity=0.230 Sum_probs=332.2
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
++..+++++.+. .+|+|..++..++.+||. .+++|+++++++++.+++++|+++++|++||.|.|+++. +||..
T Consensus 17 ~~~~~i~ig~~I-GsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~----~g~~~ 90 (452)
T TIGR01773 17 RHVTMLSIAGVI-GAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA----IGRWA 90 (452)
T ss_pred HHHHHHHHhhhh-hchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH----hCcHH
Confidence 467788888764 678999999999999995 788999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA 161 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (482)
||..+|.+|+.+....+......++++...++ ..+...+..+++++...+|++|+|..+++|.+.+
T Consensus 91 gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~ 156 (452)
T TIGR01773 91 GFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP--------------DIPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFA 156 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------cCcHHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 99999999999888877777777776664321 1123456677788889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc--cccccccccceeccccCCCCCCcch-hhHHHhhHhHhHhhhcccccchhhhhcccccccc
Q 011598 162 AWNLVGVMVLMILIPSVS--TERASAKFVFTHFNSDNGDGINSKV-YIFVLGLLMSQYTLTGYDASAHMTEETKNADRNG 238 (482)
Q Consensus 162 ~~~~~~~l~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~i 238 (482)
++|++.++.+++.++... .........++++.+ .+++.+++ .++..++...+|+|.|+|.+++++||+|||+||+
T Consensus 157 ~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~i 234 (452)
T TIGR01773 157 LIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTG--KGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSI 234 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccC--CCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHH
Confidence 999998888777665321 111111112333333 22343333 4699999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhh
Q 011598 239 PKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSS 318 (482)
Q Consensus 239 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 318 (482)
|||+..+...+.++|++.........| +++....+. .|..+.. +.. |.++...++.++++++.+++.++.
T Consensus 235 PrAi~~~~~~~~~~y~l~~~~~~~~~p-~~~~~~~~~----~p~~~~~-~~~----g~~~~~~ii~~~~~~~~~~~~~~~ 304 (452)
T TIGR01773 235 TRATNSVIWRIIVFYLGSIFIVVALLP-WNSPNLLEV----GSYVAVL-ELL----GIPHAKLIMDFVVLTAVLSCLNSA 304 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeEeC-CCCcccccC----CcHHHHH-HHc----CChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887777663 332211111 2543332 332 444577788899999999999999
Q ss_pred hhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 319 VTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTY-LGSAVAFQAMVSIATIGLYIAYALPIFFR 397 (482)
Q Consensus 319 ~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 397 (482)
+++.+|+++++||||.+| |+|+|+||+++|++|++++.+++.+..+.. ..+++.++.+.+..+....+.|.+.+.+.
T Consensus 305 ~~~~sR~~~a~ardg~lP--~~~~~v~~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~ 382 (452)
T TIGR01773 305 LYTTSRMLYSLAERGDAP--RVFMKLNKKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQ 382 (452)
T ss_pred HHHHHHHHHHHHhCCCcC--HHHHhhCCCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999977999999999999988765532 34577899999999999999999999999
Q ss_pred HHhcccc-CCCCCccccc-hhhHHHHHHHHHHHHHHHHhc-CCCCCCCCCCCCCchHHHHHHHHHHhhhheeeecccc
Q 011598 398 VTLARKS-FIPGPFNLGR-YGIVVGWIAVLWVATISVLFS-LPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHW 472 (482)
Q Consensus 398 ~~~r~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 472 (482)
+++||+. +.+|||+.++ .+|+.++++++++.+..+... .|. ..+..+....+.+....+|+.++|||
T Consensus 383 i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~--------~~~~~~~~~~~~~~~~~~y~~~~~~~ 452 (452)
T TIGR01773 383 LRMRKKLKANGEAIKIRMWLYPWLTWLVIIFICGILVSMLFIPS--------MRDEVLLTGLLTIIVLCSYLVFARRK 452 (452)
T ss_pred HHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHHHHccc--------ccHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9988764 4346655432 588899988888888777763 442 22444555555555555565555543
No 20
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=2.3e-49 Score=401.31 Aligned_cols=392 Identities=14% Similarity=0.162 Sum_probs=313.6
Q ss_pred hhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHHHHH
Q 011598 13 SVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVG 92 (482)
Q Consensus 13 ~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~ 92 (482)
.+.+|+|..++..++.+||. .+++|+++++++++.+++++|+++++|++||.|.|++|. +||.+||..+|.+|+.
T Consensus 7 ~IGsGif~~~g~~~~~aG~~-~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~----~G~~~gf~~gw~~~~~ 81 (446)
T PRK10197 7 VIGASLFVGSSVAIAEAGPA-VLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKA----IGRWAGYTIGWLYWWF 81 (446)
T ss_pred hhHhHHHHHhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH----cChHHHHHHHHHHHHH
Confidence 35799999999999999995 899999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 011598 93 QWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLM 172 (482)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~ 172 (482)
+....+........++... . +..+...++.+++++.+.+|++|+|..+++|.+.+++|++.++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~i 147 (446)
T PRK10197 82 WVLVIPLEANIAAMILHSW-------------V-PGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFI 147 (446)
T ss_pred HHHHHHHHHHHHHHHHHhc-------------c-ccCcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 8777666555444443321 1 1123456677888889999999999999999999999999888887
Q ss_pred HHhhhccccccc--ccccceeccccCCCCC-CcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHHHHHH
Q 011598 173 ILIPSVSTERAS--AKFVFTHFNSDNGDGI-NSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGIS 249 (482)
Q Consensus 173 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~ 249 (482)
+.++....+..+ ...++++..+ ..++ +++..++..++...+|+|.|+|.++..+||+||||||+|||+..+...+
T Consensus 148 i~~~~~~~g~~~~~~~~~~~~~~~--~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i 225 (446)
T PRK10197 148 FLGAVAISGFYPYAEVSGISRLWD--SGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRI 225 (446)
T ss_pred HHHHHHhcCCCCCCCCCcchhcCC--CCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHH
Confidence 776653221111 1111112222 1122 2333579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011598 250 IIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAF 329 (482)
Q Consensus 250 ~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 329 (482)
.++|++..+...... ++++. +.+. ..+.... .+.. +.++...++++.++++.+++.++.+++.+|+++++
T Consensus 226 ~i~Yil~~~~~~~~~-p~~~~-~~~~---~~~~~~~-~~~~----g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ 295 (446)
T PRK10197 226 SIFYLCSIFVVVALI-PWNMP-GLKA---VGSYRSV-LELL----NIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSL 295 (446)
T ss_pred HHHHHHHHHHHheec-CcCcc-cccc---cCcHHHH-HHHc----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888 44432 1111 1233222 2222 44557788999999999999999999999999999
Q ss_pred ccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---C
Q 011598 330 SRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTY-LGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKS---F 405 (482)
Q Consensus 330 a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~---~ 405 (482)
||||.+| |+|+|+||+|+|+++++++.+++.+..+.. ..+.+.++.+.+..+....+.|.+.+++.+++||+. +
T Consensus 296 ardg~lP--~~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~ 373 (446)
T PRK10197 296 SRRGDAP--AVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEG 373 (446)
T ss_pred HcCCCcC--HHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999 999999977999999999988877654432 234568999999999999999999999999998852 3
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHhcCCC
Q 011598 406 IPGPFNLGRYGIVVGWIAVLWVATISVLFSLPV 438 (482)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (482)
.++|||.| ++|+.++++++++.++.....+|+
T Consensus 374 ~~~~~~~~-~~p~~~~~~i~~~~~~~~~~~~~~ 405 (446)
T PRK10197 374 SEIRLRMW-LYPWLTWLVIGFITFVLVVMLFRP 405 (446)
T ss_pred CCCCCcCC-CcchHHHHHHHHHHHHHHHHHHCc
Confidence 46789988 899999999999888887776653
No 21
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=7.1e-49 Score=398.74 Aligned_cols=389 Identities=15% Similarity=0.166 Sum_probs=308.2
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
+++++++++.+. .+|+|..++...+ .|+. .+++|+++++.+++.+++++|+++++|++||.|.|+++. +||..
T Consensus 13 ~~~~~l~vg~~i-GsGif~~~~~~a~-~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~----~g~~~ 85 (445)
T PRK10644 13 IPVTLMVAGNIM-GSGVFLLPANLAS-TGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRC----FGPFL 85 (445)
T ss_pred HHHHHHHHhhHh-hhHHHhhHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHH----cCchH
Confidence 678888887665 6899999988766 4663 789999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA 161 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (482)
||.++|.+|+.+............++....++. ..+++...++.++++++...+|++|+|..+|+|++.+
T Consensus 86 gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~ 155 (445)
T PRK10644 86 GYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI----------LKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVAT 155 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------cCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 999999999887665555555555665544321 1223445566777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchH
Q 011598 162 AWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKG 241 (482)
Q Consensus 162 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~a 241 (482)
..|++.++.+++.++.....+. +.+..+ .++. ++..++..++...+|+|.|+|.+++++||+||||||+|||
T Consensus 156 ~~~~i~l~~~~~~~~~~~~~~~-----~~~~~~--~~~~-~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPra 227 (445)
T PRK10644 156 VLALIPIVGIAVFGWFWFRGET-----YMAAWN--VSGL-GTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIA 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHhCchh-----ccCCcc--cccc-chHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHH
Confidence 9999888877777655332111 111111 1111 1234577788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhh
Q 011598 242 IISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTS 321 (482)
Q Consensus 242 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (482)
++.++.++.++|++..++..... +++++..++ .|..+...+..++. ...++.+..+++.+++.++++..
T Consensus 228 i~~s~~i~~v~Y~l~~~~~~~~~-~~~~l~~~~-----~p~~~~~~~~~g~~-----~~~~v~~~~~~s~~~~~~~~~~~ 296 (445)
T PRK10644 228 TIGGVLIAAVCYVLSSTAIMGMI-PNAALRVSA-----SPFGDAARMALGDT-----AGAIVSFCAAAGCLGSLGGWTLL 296 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CHHHHhcCC-----ChHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888 555554332 57766665555433 56677788889999999999999
Q ss_pred hhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 322 NSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGS--AVAFQAMVSIATIGLYIAYALPIFFRVT 399 (482)
Q Consensus 322 ~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 399 (482)
.+|++++++|||.+| |+|+|+||+++|+++++++.+++.++.+....+ .+.++.+.++.+...++.|.+.+.+.++
T Consensus 297 ~sr~~~a~ardg~lP--~~~~~v~~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~ 374 (445)
T PRK10644 297 AGQTAKAAADDGLFP--PIFARVNKAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLL 374 (445)
T ss_pred HHHHHHHHHhCCCcc--HHHHhhCcCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999988999999999999998866533222 3579999999999999999999999999
Q ss_pred hccccCCCCCccccchhhHHHHHHHHHHHHHHH
Q 011598 400 LARKSFIPGPFNLGRYGIVVGWIAVLWVATISV 432 (482)
Q Consensus 400 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (482)
+|||+.+ ++.| ..++.++++++.+++.+.
T Consensus 375 l~~~~~~---~~~p-~~~~~~~~~~~~~~~~~~ 403 (445)
T PRK10644 375 LGHGHFG---KARP-AYLAVTLIAFVYCIWAVV 403 (445)
T ss_pred HhhcCCc---cccc-chhHHHHHHHHHHHHHHH
Confidence 8876522 2223 557788888888877764
No 22
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-49 Score=383.62 Aligned_cols=380 Identities=19% Similarity=0.280 Sum_probs=315.5
Q ss_pred hhhHHHHhHhhhccccChhhH-HHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHHHHH
Q 011598 14 VLTGITTLYNTGLNFGGPISL-VYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVG 92 (482)
Q Consensus 14 ~~~gi~~~~~~~~~~~G~~~~-~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~ 92 (482)
+.+|+|..|...++.+|+.+. ++.|+.+++.+++.+++|+|+++.+|++||+|.|..++ ||+.++|...|.-++.
T Consensus 28 IGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~a----fg~~~aF~~~wvs~l~ 103 (479)
T KOG1287|consen 28 IGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISEA----FGPFPAFLFLWVSLLI 103 (479)
T ss_pred EecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHH----hccchhHHHHHHHHHH
Confidence 478999999999999998666 66799999999999999999999999999999999999 9999999999977766
Q ss_pred H-HHHHHHHHHHHHHH-HHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 011598 93 Q-WAVTTSVDFSLAQM-IQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMV 170 (482)
Q Consensus 93 ~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~ 170 (482)
. ....+..+..+++| +...+ + ....+.....+++.+++++...+|+.++|+..++|.+++..|++.+.+
T Consensus 104 ~~p~~~Ai~altF~~Y~l~p~f--------p-~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~~ft~~Kl~al~l 174 (479)
T KOG1287|consen 104 IVPTSAAIIALTFATYLLKPFF--------P-LCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQIVFTIAKLLALLL 174 (479)
T ss_pred HhhhHHHHHHHHHHHHhhcccC--------C-CCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4 55568888888888 33322 1 134566788899999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHHHHHHH
Q 011598 171 LMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGISI 250 (482)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~ 250 (482)
+++.++......+.+++..+++. ++... ...+..++....|+|.|||...+.+||+|||+||+|||+..++.+++
T Consensus 175 Iii~G~~~~~~g~~~~~~~~~f~---g~~~~--~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt 249 (479)
T KOG1287|consen 175 IIITGLYLLFWGSTQNFENSEFE---GSDTD--VGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVT 249 (479)
T ss_pred HHHhchheeEecccccccccccc---cCcCc--hHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHHHH
Confidence 99999886554443332211121 22222 23488899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 011598 251 IFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFS 330 (482)
Q Consensus 251 ~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 330 (482)
++|++..+++..++ +++++.+++ .++..+.+.. .+. ..+++-+.+.++++|+.|+.+++.||+++++|
T Consensus 250 ~iYil~NvAy~~vl-s~~e~l~S~------aVav~Fa~~~----~G~-~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~a 317 (479)
T KOG1287|consen 250 VIYVLVNVAYFTVL-SPDEILSSD------AVAVTFADRI----LGV-FAWAIPFSVALSLIGSLNSVIFSSSRLFYAGA 317 (479)
T ss_pred HHHHHhHhheeEec-CHHHhcccc------hHHHHHHHHh----ccc-hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999 788886554 3333343333 222 45899999999999999999999999999999
Q ss_pred cCCCCCccccceecCCC-CchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCC
Q 011598 331 RDGAMPFSSFWHEVNSQ-DIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKS-FIPG 408 (482)
Q Consensus 331 ~dg~lP~~~~f~~~~~~-~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~ 408 (482)
|+|++| +.|++.|++ .+|..++++....+++..+ .+.+++++|..++.....+.+.+++.+++|+|+ +.+|
T Consensus 318 reG~LP--~~~s~i~~~~~TP~~allf~~~~~i~~~~-----~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~r 390 (479)
T KOG1287|consen 318 REGHLP--AFFSMISVRRFTPRPALLFSGLLSIVLSL-----IGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPR 390 (479)
T ss_pred HccCcc--HHHHhhcCCCCCChHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 999999 999999999 7999999999999999887 346899999999999999999999999998766 7789
Q ss_pred CccccchhhHHHHHHHHHHHHHHHH
Q 011598 409 PFNLGRYGIVVGWIAVLWVATISVL 433 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (482)
|+|.| .. .+++.++.++.++..
T Consensus 391 PiKvp-l~--~p~~~~~~~i~lvvi 412 (479)
T KOG1287|consen 391 PIKVP-LF--IPILFLLICIFLVVI 412 (479)
T ss_pred CEeee-ee--hHHHHHHHHHHHhhe
Confidence 99998 33 333333334444343
No 23
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=9.8e-49 Score=399.50 Aligned_cols=400 Identities=17% Similarity=0.271 Sum_probs=317.1
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
+++.+++++.+ +.+|+|..++..++.+|| +.+++|+++++++++++++++|+++..|..|+.|.|++|. +||..
T Consensus 25 ~~~~~i~vG~~-IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~----~g~~~ 98 (469)
T PRK11049 25 RHIQLIAIGGA-IGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDL----LGPWA 98 (469)
T ss_pred HHHHHHHHhhH-HHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH----hCcHH
Confidence 56778888874 589999999999999999 5899999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA 161 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (482)
||+.+|.+++.+....+..+.....++...++ . .+ ....+.+++++...+|++|+|..+++|.+.+
T Consensus 99 gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p--------~---~~---~~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~ 164 (469)
T PRK11049 99 GYFTGWTYWFCWVVTGIADVVAITAYAQFWFP--------D---LS---DWVASLAVVLLLLSLNLATVKMFGEMEFWFA 164 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------C---Cc---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999866555555555555543221 0 11 2234455677788999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccc--ccc--ccccceeccccCCCCC-CcchhhHHHhhHhHhHhhhcccccchhhhhcccccc
Q 011598 162 AWNLVGVMVLMILIPSVSTE--RAS--AKFVFTHFNSDNGDGI-NSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADR 236 (482)
Q Consensus 162 ~~~~~~~l~~~i~~~~~~~~--~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k 236 (482)
.+|+..++.+++.++..... +++ ....+++..+ .+++ +++..++..++...+|+|.|+|.+++++||+|||+|
T Consensus 165 ~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r 242 (469)
T PRK11049 165 MIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWN--DGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEK 242 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCC--CCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhh
Confidence 99999999888887653211 111 1112333333 2223 233356889999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhh
Q 011598 237 NGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGM 316 (482)
Q Consensus 237 ~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 316 (482)
|+|||+..+.+.+.+.|++......... |++++.+.+ .|..+.+.. .|.++...++.+..+++.+++.+
T Consensus 243 ~iPrai~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~~-----~p~~~~~~~-----~g~~~~~~~~~~~~~~s~~~~~~ 311 (469)
T PRK11049 243 SLPRAINSIPIRIIMFYVFALIVIMSVT-PWSSVVPDK-----SPFVELFVL-----VGLPAAASVINFVVLTSAASSAN 311 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHeeec-CccccCccC-----CcHHHHHHH-----cCChhHHHHHHHHHHHHHHHHHH
Confidence 9999999888889999999999888776 566654332 566554432 24455778889999999999999
Q ss_pred hhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHH-Hhhhc--hHHHHHHHHHHHHHHHHHHHHHH
Q 011598 317 SSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMA-LTYLG--SAVAFQAMVSIATIGLYIAYALP 393 (482)
Q Consensus 317 ~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~-~~~~~--~~~~~~~l~~~~~~~~~~~~~~~ 393 (482)
+.+.+.+|++++++|||.+| |+|+|+||+|+|+++++++.++..+.. +.... ..+.++.+.+.++...++.|.+.
T Consensus 312 ~~~~~~sR~l~a~ardg~lP--~~~~kv~~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~ 389 (469)
T PRK11049 312 SGVFSTSRMLFGLAQEGVAP--KAFAKLSKRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTII 389 (469)
T ss_pred HHHHHHHHHHHHHHhCCCCC--HHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999988999999999988765422 21222 23579999999999999999999
Q ss_pred HHHHHHhcccc-CC--CCCccccchhhHHHHHHHHHHHHHHHHhcCC
Q 011598 394 IFFRVTLARKS-FI--PGPFNLGRYGIVVGWIAVLWVATISVLFSLP 437 (482)
Q Consensus 394 ~~~~~~~r~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (482)
+.+++++|||+ +. +||||.| .+++.++++++++.+......++
T Consensus 390 ~~a~~~lr~~~p~~~~~~pf~~p-~~~~~~~~~~~~~~~~~~~~~~~ 435 (469)
T PRK11049 390 LCSYLVYRKQRPHLHEKSIYKMP-LGKLMCWVCMAFFAFVLVLLTLE 435 (469)
T ss_pred HHHHHHHHHhhhhcCCCCCccCc-CcchHHHHHHHHHHHHHHHHHHc
Confidence 99999988765 32 2689998 88899998888888877665554
No 24
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=2.9e-48 Score=396.20 Aligned_cols=401 Identities=15% Similarity=0.182 Sum_probs=309.1
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-ChhhhHHHhhcCCCCCcc
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTS-GGLYYWSAKLAGPKWAPF 80 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~-Gg~y~~~~~~~~~~~g~~ 80 (482)
+++++++++++. .+|+|..++...+.+||...+++|+++++.+++.+++++|+++++|++ ||.|.|++|. +||.
T Consensus 6 ~~~~~l~vg~~I-GsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~----fG~~ 80 (468)
T TIGR03810 6 GALTALVVGSMI-GSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAG----FGPF 80 (468)
T ss_pred HHHHHHHHHhHH-hhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhH----cCcH
Confidence 678888888766 688999999999889986578999999999999999999999999996 5999999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 011598 81 ASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLA 160 (482)
Q Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (482)
.||..+|.+|+++............++....++. .. ..++.+...++.+++++...+|++|+|..+++|.+.
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~----~~----~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~ 152 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPI----FG----GGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTIT 152 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cc----CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999999999987665555444444554443321 00 112234445566777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccch
Q 011598 161 AAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPK 240 (482)
Q Consensus 161 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ 240 (482)
++.|+++++++++.++.....+...+..+++..+ ..++.+...++..++...+|+|.|+|.++.++||.|| |||+||
T Consensus 153 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ 229 (468)
T TIGR03810 153 TIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANG--GFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGK 229 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhcHhhcCccccccccc--cCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchH
Confidence 9999999888887766533221111000011000 1112222345667888999999999999999999998 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCc-HHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 011598 241 GIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYA-IAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSV 319 (482)
Q Consensus 241 ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 319 (482)
++..++..+.++|++.++...... +.+++.+.+ .| ......+..+ ++...++.+.++++.+++.++++
T Consensus 230 ai~~~~~~v~~lY~l~~~~~~g~~-~~~~l~~~~-----~p~~~~~~~~~~g-----~~~~~~i~~~~~is~~~~~~~~~ 298 (468)
T TIGR03810 230 ATVIGLIGVLAIYVLVSVLSYGIM-TQAQLAGLK-----NPSMAYVLEHMVG-----TWGAVLINIGLIISILGAWLSWT 298 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc-CHHHHhcCC-----CchHHHHHHHHcc-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888 566654433 33 3333333332 34778999999999999999999
Q ss_pred hhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 320 TSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVT 399 (482)
Q Consensus 320 ~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 399 (482)
...+|+++++||||.+| |+|+|+||+|+|+++++++.+++.++.+......+.++.+.++.+...++.|.+.+++.++
T Consensus 299 ~~~sR~~~a~ardg~lP--~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~ 376 (468)
T TIGR03810 299 LLPAEIPLLMAKDKLMP--KYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVK 376 (468)
T ss_pred HHHHHHHHHHHhCCCcc--HHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999889999999999999877655444567899999999999999999999999999
Q ss_pred hccccCCCCCccccchhhHHHHHHHHHHHHHHHHh
Q 011598 400 LARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLF 434 (482)
Q Consensus 400 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
+|+|++++++ | + ..++++.++.+++++..+..
T Consensus 377 l~~~~~~~~~-~-~-~~~~~~~l~~~~~~~~~~~~ 408 (468)
T TIGR03810 377 LSWRGGQERG-R-R-KQLLIGLVALLYAVWLIYAA 408 (468)
T ss_pred HHHhcCCccc-h-h-hhHHHHHHHHHHHHHHHHHh
Confidence 9866421111 1 1 23566777777777666543
No 25
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-48 Score=372.01 Aligned_cols=428 Identities=17% Similarity=0.250 Sum_probs=352.4
Q ss_pred HHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHH
Q 011598 6 AFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMT 85 (482)
Q Consensus 6 ~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~ 85 (482)
.++.++. +.+|+|...+..++.+|| +.+++++++++++..+.-+.+||..+-|++|+..+|+++. +||+.||.+
T Consensus 22 lIAiGGa-IGtGLFlGSg~~I~~AGP-SvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~----lG~~Agf~t 95 (462)
T COG1113 22 LIAIGGA-IGTGLFLGSGSAIAMAGP-SVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKY----LGPWAGFLT 95 (462)
T ss_pred HHHHhhh-hhhhhhcccchhhhhhCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHH----hcchHHHHH
Confidence 3455543 478999999999999999 5999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 011598 86 GWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNL 165 (482)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 165 (482)
+|.||+.+...........+.|+..-++ ..+.++.+++.+++...+|+.++|.+++.+.++..+|+
T Consensus 96 gW~YW~~wv~v~~ae~tAi~~y~~~WfP--------------~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV 161 (462)
T COG1113 96 GWTYWFFWVLVGIAELTAIGIYLQFWFP--------------DVPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKV 161 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888777777777777765332 22556667778888999999999999999999999999
Q ss_pred HHHHHHHHHhhhccc---ccccccccceeccccCCCCC-CcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchH
Q 011598 166 VGVMVLMILIPSVST---ERASAKFVFTHFNSDNGDGI-NSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKG 241 (482)
Q Consensus 166 ~~~l~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~a 241 (482)
+.++.+++.+..... ..+....++++.++ ..|| +++..+++.++...+|+|.|.|.+...++|.|||||++|||
T Consensus 162 ~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~--hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkA 239 (462)
T COG1113 162 AAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWD--HGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKA 239 (462)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCCcccccccc--CCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHH
Confidence 999999888765322 12222345677776 4454 44458899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhh
Q 011598 242 IISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTS 321 (482)
Q Consensus 242 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (482)
+---...+.++|+.....+.... |++++.++. +|+.+.+ +. .|.|..+-+++++++.+.+++.|+.+++
T Consensus 240 in~V~~RI~iFYvgsl~vi~~l~-PW~~~~~~~-----SPFV~~f-~~----iGi~~Aa~i~N~VVLtAa~S~~NSglys 308 (462)
T COG1113 240 INSVIWRILIFYVGSLFVILSLY-PWNQIGEDG-----SPFVTVF-SL----IGIPFAAGIMNFVVLTAALSALNSGLYS 308 (462)
T ss_pred HhhhhHHHHHHHHHHHHHHheec-cccccCCCC-----CcHHHHH-HH----cCCcccccceeEEEeechhhcccccccc
Confidence 99999999999999999998888 677765433 7886555 33 3667788899999999999999999999
Q ss_pred hhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011598 322 NSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALT-YLGSAVAFQAMVSIATIGLYIAYALPIFFRVTL 400 (482)
Q Consensus 322 ~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 400 (482)
.+|++|++|+||..| |.|+|+||+|+|+++++++.+...+..++ +..++..|+.+.+.++...+..|+++.++.+++
T Consensus 309 tsRmL~~la~~g~AP--k~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~ 386 (462)
T COG1113 309 TSRMLYSLAKQGDAP--KAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKL 386 (462)
T ss_pred cchHHHHHhhcCccc--HhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999998885544 456789999999999999999999999999999
Q ss_pred cccc---CCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhheeeecccccccc
Q 011598 401 ARKS---FIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGP 476 (482)
Q Consensus 401 r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 476 (482)
||++ .++.+||+| +.|..+++.+.+.++++....+.+ +..+......+++++..+.|..++||++++.
T Consensus 387 rk~~~~~~~~~~fkm~-~~p~~~~l~l~fl~~vlv~m~~~~-------~t~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 457 (462)
T COG1113 387 RKAKPAEGKKLKFKMP-LYPFTNYLTLAFLAFVLVLMLFDP-------DTRISLLVGPVWLVLLGIGYLVKRKKKARKA 457 (462)
T ss_pred HhcchhcccCcccccc-cccHHHHHHHHHHHHHHHHHHcCc-------ccchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 9853 334679999 899999999988888887766531 1222344444444444455555554444433
No 26
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=9.5e-48 Score=388.81 Aligned_cols=386 Identities=14% Similarity=0.147 Sum_probs=303.1
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
++++++.++.+. .+|+|..++... .+||. .+++|+++++.+++.+++++|+++++|++||.|.|++| + ||.+
T Consensus 10 ~~~~~l~vg~~I-GsGif~lp~~~a-~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~----g~~~ 81 (435)
T PRK10435 10 FACTGVVAGNMM-GSGIALLPANLA-SIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-I----SPAF 81 (435)
T ss_pred HHHHHHHHhhHH-HHHHHHHHHHHH-HhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-H----CcHH
Confidence 678888888765 789999998864 57885 89999999999999999999999999999999999988 4 4558
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA 161 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (482)
||.++|.+|..........+....+|+..+++. . .++....++..+++++.+.+|++|+|..++++.+..
T Consensus 82 gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~---------~-~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~ 151 (435)
T PRK10435 82 GFQTGVLYYHANWIGNLAIGITAVSYLSTFFPV---------L-NDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGL 151 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---------c-CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999876555566666666777665432 1 122344455667777889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchH
Q 011598 162 AWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKG 241 (482)
Q Consensus 162 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~a 241 (482)
+.+++.++.+.+.++.+.+. ... .+++.++ .+.+..++..++...+|+|.|+|.++..+||+||||||+|||
T Consensus 152 ~~~li~~~~~~i~g~~~~~~---~~~-~~~~~~~----~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrA 223 (435)
T PRK10435 152 VLVLIPVVGTAIVGWHWFDA---ATY-AANWNTS----DTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLA 223 (435)
T ss_pred HHHHHHHHHHHHHHHHHcCH---Hhh-cccccCC----CCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHH
Confidence 98887766665555433211 111 1222211 112346799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhh
Q 011598 242 IISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTS 321 (482)
Q Consensus 242 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (482)
+..+..++.++|++..+...... +++++.+.+ .|....+.+.. .++...++++..+++++++.+++++.
T Consensus 224 i~~~~~iv~ilYil~~~~~~~~~-p~~~~~~~~-----~p~~~~~~~~~-----g~~~~~~i~~~~~i~~l~~~~~~~~~ 292 (435)
T PRK10435 224 TMLGTGLAGIIYIAATQVISGMF-PASVMAASG-----APFAISASTIL-----GNWAAPLVSAFTAFACLTSLGSWMML 292 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcCC-----CcHHHHHHHHh-----chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888 566654333 57755554333 23477788888999999999999999
Q ss_pred hhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHh----hh---chHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 322 NSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALT----YL---GSAVAFQAMVSIATIGLYIAYALPI 394 (482)
Q Consensus 322 ~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~----~~---~~~~~~~~l~~~~~~~~~~~~~~~~ 394 (482)
.+|..++++|||.+| |+|+|+||+|+|+++++++.++..++... .. ...+.|+.+.++++...++.|++.+
T Consensus 293 ~~r~~~~~ardG~lP--~~f~k~nk~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~ 370 (435)
T PRK10435 293 VGQAGVRAANDGNFP--KVYGEVDKNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSC 370 (435)
T ss_pred HHHHHHHHHhCCCcc--HHHHhhCcCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 99999998899999999998887664421 11 1357899999999999999999999
Q ss_pred HHHHHhccccCCCCCccccchhhHHHHHHHHHHHHHHH
Q 011598 395 FFRVTLARKSFIPGPFNLGRYGIVVGWIAVLWVATISV 432 (482)
Q Consensus 395 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (482)
++.+|+||+ ++|.+ ..++.++++++++++.+.
T Consensus 371 ~~~ir~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~ 402 (435)
T PRK10435 371 VDLIRFEGV-----NIRNF-VSLICSVLGCVFCFIALM 402 (435)
T ss_pred HHHHHhcCC-----chhHH-HHHHHHHHHHHHHHHHHH
Confidence 999977542 23333 456777888777777654
No 27
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1.9e-47 Score=384.40 Aligned_cols=379 Identities=15% Similarity=0.150 Sum_probs=289.7
Q ss_pred CchhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcc
Q 011598 1 MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPF 80 (482)
Q Consensus 1 ~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~ 80 (482)
+|+..++.++.+. .+|+|..++...+.+||. .+++|+++++.+++.+++++|+++++|++||.|.|++|. +||.
T Consensus 3 ~~~~~~l~~g~~I-GsGif~~~g~~~~~aG~~-~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~----~G~~ 76 (410)
T PRK11021 3 LWQGIGLLSTSLL-GTGVFAVPALAALVAGNN-SLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMA----FGPR 76 (410)
T ss_pred HHHHHHHHHHHHH-hhHHHHhHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHH----hCch
Confidence 3778888888776 889999999999999994 899999999999999999999999999999999999999 8888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 011598 81 ASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLA 160 (482)
Q Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (482)
+||..+|.++..+....+.......++....++. +.+....+..+++++...+|++|+|.++|+|.+.
T Consensus 77 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~ 144 (410)
T PRK11021 77 LGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW------------SSWQLLLAELLTLALLWLLNLRGASSSANLQTVI 144 (410)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC------------CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999876554444444444555443311 1233445666777888999999999999999988
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccch
Q 011598 161 AAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPK 240 (482)
Q Consensus 161 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ 240 (482)
.+.++..+..+ ... ++.++.+..+++. .+.+..++..++...+|+|.|+|.+++++||+||||||+||
T Consensus 145 ~~~~~~i~~~~----~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPr 212 (410)
T PRK11021 145 ALLIVALVVAI----WWA-GDIKPADIPFPAP-------GSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPR 212 (410)
T ss_pred HHHHHHHHHHH----HHH-cCCchhcCCCCCC-------CCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccH
Confidence 76544332221 111 1111111111111 11123458889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 011598 241 GIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVT 320 (482)
Q Consensus 241 ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (482)
|+..+...+.++|++.+....... ++++..+. +.|..+.+.+..+.. ...++.+..+++.+++.++++.
T Consensus 213 Ai~~~~~~~~~lYil~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~G~~-----~~~ii~i~~~~s~~~~~~~~~~ 281 (410)
T PRK11021 213 ALMIGLLLAGLVYWACTVVVLHFP-AYGDKQAA-----AASLPGIFVQLFGGY-----ALWVICVIGYLACFASVNIYTQ 281 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CCcchhhc-----cccHHHHHHHHhCch-----hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876655 33333222 145545554444433 4567788889999999999999
Q ss_pred hhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011598 321 SNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTL 400 (482)
Q Consensus 321 ~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 400 (482)
+.+|++++++|||.+| |+|+|+||+|+|+++++++.+++.+..+........++.+.+.++....+.|.+.+.+.+++
T Consensus 282 ~~sR~l~a~ardg~lP--~~~~k~~~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l 359 (410)
T PRK11021 282 SFARLVWSQAREGRPP--SYLARLSARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKL 359 (410)
T ss_pred HHHHHHHHHHccCCcc--HHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999998899999999999988876553333345688899999999999999999999988
Q ss_pred ccccCCCCCccccchhhHHHHHHHHHHHHHHHH
Q 011598 401 ARKSFIPGPFNLGRYGIVVGWIAVLWVATISVL 433 (482)
Q Consensus 401 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (482)
+||+ .+.++.++++.+++++..
T Consensus 360 ~~~~-----------~~~~~~~~~~~~~~~~~~ 381 (410)
T PRK11021 360 LKGR-----------YRPLAVLGCLLCLLLLVM 381 (410)
T ss_pred hccc-----------hHHHHHHHHHHHHHHHHH
Confidence 7642 134566666666665443
No 28
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=3.6e-47 Score=389.58 Aligned_cols=442 Identities=14% Similarity=0.117 Sum_probs=311.0
Q ss_pred hhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHH-HHHHHHHHHHhhhhcC-CCChhhhHHHhhcCCCCCcch
Q 011598 4 NFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAF-TLFVGSSMAEICSSYP-TSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 4 ~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~-~l~~a~~~ael~~~~p-~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
++.+...+.+...+++..+. .+..|.. .+..|++++++ ++|.+++++||++++| ++||.|.|++|+ +|+.+
T Consensus 8 ~~~~~~~~~~~v~~~~~~~~--~a~~G~~-~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a----~G~~~ 80 (507)
T TIGR00910 8 LFGFFAITASMVLAVYEYPT--FATSGFH-LVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNT----LGERF 80 (507)
T ss_pred HHHHHHHHHHHHHHHHhhHH--HHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhc----cCccH
Confidence 34444444444456665554 3346774 77777877775 7999999999999997 899999999999 88889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA 161 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (482)
||..+|.+|+.+....+.............+.. + .+..+.+...++.++++++.+++|++|.|..++++.+..
T Consensus 81 Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~------~-~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~ 153 (507)
T TIGR00910 81 GFAAIFFGWFQIAIGFIPMIYFILGALSYILKF------P-ALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGF 153 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------c-hhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999876544333222222222222210 1 122334455566667788899999999999999999876
Q ss_pred HHHHHH-HHHHHHHhhhcccccccc--cccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhcccccccc
Q 011598 162 AWNLVG-VMVLMILIPSVSTERASA--KFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNG 238 (482)
Q Consensus 162 ~~~~~~-~l~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~i 238 (482)
+..++. .+++++.+.......++. +...+++.+ ++.. .+....+...+|+|.|+|.+++++||+|||+||+
T Consensus 154 ~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p----~~~~--~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~ 227 (507)
T TIGR00910 154 FAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFP----DFSK--VGTLVVFVAFIGAYMGVEASASHINELENPGRDY 227 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCC----Cccc--ccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccc
Confidence 655444 333333333322111111 111111111 1111 2244455556899999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCC-CCCchhHHHHHHHHHHHHHHhhh
Q 011598 239 PKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRF-GSGVGGIVCLGVVAVAIFFCGMS 317 (482)
Q Consensus 239 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 317 (482)
|||++.+.+++.++|.+..+.+.... |++++...+ +..+.+........ +.++...++.+..+++.+++.++
T Consensus 228 PrAi~~~~i~~~~l~~l~~~~i~~~~-p~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~ 300 (507)
T TIGR00910 228 PLAMILLMIAAICLDAIGGFSIAAVI-PGKEINLSA------GVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIAS 300 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHheec-Chhhcccch------HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888887777 444432211 12233322221111 12345667888889999999999
Q ss_pred hhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhh----chHHHHHHHHHHHHHHHHHHHHHH
Q 011598 318 SVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYL----GSAVAFQAMVSIATIGLYIAYALP 393 (482)
Q Consensus 318 ~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~ 393 (482)
++.+.+|++++++|||.+| ++|+|+||+++|+++++++.+++.++.+... +....|+.+.+.++....+.|.+.
T Consensus 301 ~i~~~sR~l~~~ardg~lP--~~~~k~nk~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~ 378 (507)
T TIGR00910 301 WIVGPSRGMFAAAQKGLLP--AAFAKMNKHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLF 378 (507)
T ss_pred HHHHHHHHHHHhcccCCcC--HHHHhhCcCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999779999999999999987544322 234567888899999999999999
Q ss_pred HHHHHHhcccc-CCCCCccccc---hhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHH---HHHHhhhhee
Q 011598 394 IFFRVTLARKS-FIPGPFNLGR---YGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCG---LLILTVSAWI 466 (482)
Q Consensus 394 ~~~~~~~r~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 466 (482)
+++.+++|+|+ +.+||||.|. ...++++++++++++..++.++|+..+.+..+++|..+.+.. ..++..++|.
T Consensus 379 ~~a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp~~~~~~~~~~y~~~~~~~~~~~~~~~~~~y~ 458 (507)
T TIGR00910 379 FIGYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFISFLPPANIAGDETDMYQEILLISFLVTAALPFIIYA 458 (507)
T ss_pred HHHHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHheeeeCCCccCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887655 6789999973 235889999999999999999998887777778887666533 3445566676
Q ss_pred eecccccc
Q 011598 467 FSARHWFK 474 (482)
Q Consensus 467 ~~~r~~~~ 474 (482)
.++||+++
T Consensus 459 ~~~~~~~~ 466 (507)
T TIGR00910 459 LHDKKGHA 466 (507)
T ss_pred HhcccccC
Confidence 66666543
No 29
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=8.3e-48 Score=396.46 Aligned_cols=396 Identities=17% Similarity=0.211 Sum_probs=301.4
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhH-HHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcc
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISL-VYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPF 80 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~-~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~ 80 (482)
+++++++++.+. .+|+|..++..++.+|+.+. +++|+++++++++.+++++|+++++|++||.|.|+++. +||.
T Consensus 47 ~~~~~l~vg~ii-GsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~----~g~~ 121 (501)
T TIGR00911 47 LSGVGIIVGTII-GSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEV----FGPL 121 (501)
T ss_pred hHhhHhheeceE-EeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhH----hCCH
Confidence 677888888775 46899999999988887544 67899999999999999999999999999999999999 9999
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011598 81 ASWMTGWFNIVG-QWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQL 159 (482)
Q Consensus 81 ~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (482)
.||..+|..+.. +....+..+...++++...+. + ++..+.+...+++++++++.+.+|++|+|..+|+|.+
T Consensus 122 ~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~-------~-~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i 193 (501)
T TIGR00911 122 LAFLRLWIELLVIRPGSQAVNALNFAIYILTPVF-------P-DCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDI 193 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------C-CCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999987753 234455555555565433111 1 1233445566778888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccc
Q 011598 160 AAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGP 239 (482)
Q Consensus 160 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip 239 (482)
.+.+|++.++++++.++.....++..+...++..+ +..++..++..++...+|+|.|+|.+++++||+|||+||+|
T Consensus 194 ~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~----~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iP 269 (501)
T TIGR00911 194 FTACKLLALLLIIITGWVQLGKGGVESLNPKNAFE----GTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLP 269 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccCcccccC----CCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhH
Confidence 99999999888877776543211111111111111 11123456888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 011598 240 KGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSV 319 (482)
Q Consensus 240 ~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 319 (482)
||+..++.++.++|++..++..... +++++.+++ .+.........+ ....++.+...++.+++.++.+
T Consensus 270 rAi~~s~~~v~~~Y~l~~~a~~~~~-~~~~l~~~~-----~~~~~~~~~~~g------~~~~~i~~~~~is~~~~~~~~~ 337 (501)
T TIGR00911 270 IAIIISMPIVTFIYVLTNIAYFTVL-SPEELLASL-----AVAVDFGERLLG------VMSWAMPALVGLSCFGSVNGSL 337 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcCh-----HHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888 566654331 121122222222 2456778888899999999999
Q ss_pred hhhhhhhhhhccCCCCCccccceecCCC-CchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 320 TSNSRMAYAFSRDGAMPFSSFWHEVNSQ-DIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRV 398 (482)
Q Consensus 320 ~~~sR~l~a~a~dg~lP~~~~f~~~~~~-~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 398 (482)
.+.+|++++++|||.+| ++|+|+|+| ++|+++++++.+++.+... . +.+..+.++.+....+.|.+.+++.+
T Consensus 338 ~~~sR~l~a~ardg~lP--~~~~~v~~~~~~P~~all~~~~i~~l~~~--~---~~~~~l~~~~~~~~~i~y~l~~~a~i 410 (501)
T TIGR00911 338 FSSSRLFFVGGREGHLP--SLLSMIHVKRLTPLPSLLIVCTLTLLMLF--S---GDIYSLINLISFANWLFNALAVAGLL 410 (501)
T ss_pred HHHHHHHHHHHhcCCcc--HHHHHhcCCCCCCHHHHHHHHHHHHHHHc--c---CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999998 9999999998888775443 1 22445667888888999999999998
Q ss_pred Hhcccc-CCCCCccccchhhHHHHHHHHHHHHHHHHhcC
Q 011598 399 TLARKS-FIPGPFNLGRYGIVVGWIAVLWVATISVLFSL 436 (482)
Q Consensus 399 ~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (482)
++|||+ +.+||||.|+ ...+++++.+++..+....
T Consensus 411 ~lR~~~p~~~rp~r~p~---~~~~l~~~~~~~~~~~~~~ 446 (501)
T TIGR00911 411 WLRYKRPEMNRPIKVPL---FFPVFFLLSCLFLIILSLY 446 (501)
T ss_pred heeccCCCCCCCccCch---HHHHHHHHHHHHHhhhhhc
Confidence 888765 6789999983 2444444444444444333
No 30
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=6.2e-47 Score=383.73 Aligned_cols=416 Identities=18% Similarity=0.214 Sum_probs=327.3
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
++.+++.++.+ ..+|++..++.....+|+. .+++|+++++.+++.+++++|+++++|++||.|.|++|. +||..
T Consensus 8 ~~~~~~~i~~~-ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~----~G~~~ 81 (429)
T TIGR00909 8 FDLTMLGIGAM-IGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEA----MGELT 81 (429)
T ss_pred HHHHHHHHhhh-hcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHH----hCcHH
Confidence 67888888887 4688999999988888885 889999999999999999999999999999999999999 88889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccc---hhHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEAS---KYVVIAFHGGILLLHAIINSLPISILSFFGQ 158 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~ 158 (482)
|+..+|.+++.+....+......++++..+++..+ ...+...... .......+++++++.+.+|++|+|..+|+|.
T Consensus 82 g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~ 160 (429)
T TIGR00909 82 AFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVG-LDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVND 160 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 99999999999988888888888898887765210 0111000000 0011234567888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhcccccccc
Q 011598 159 LAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNG 238 (482)
Q Consensus 159 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~i 238 (482)
+...+|++.++++++.++.+.+.+ .++++.+ .+..++..++...+|+|.|+|...+++||+|||+|++
T Consensus 161 v~~~~~i~~l~~~~~~~~~~~~~~-----~~~~~~~-------~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~i 228 (429)
T TIGR00909 161 ILVVLKVAALLLFAALGAIHFASN-----NYTPFMP-------MGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDI 228 (429)
T ss_pred HHHHHHHHHHHHhhhHHHhhCcHH-----hcCCCCC-------CcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccc
Confidence 999999998887776665433211 1122111 1234588889999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhh
Q 011598 239 PKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSS 318 (482)
Q Consensus 239 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 318 (482)
||++..+..++.++|++.++...... |.+++.+++ .|......+. +.++...++.+..+++.+++.++.
T Consensus 229 p~ai~~~~~~~~v~Yil~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~ 297 (429)
T TIGR00909 229 PKAIILSLIVVTLLYVLVAAVILGAV-PWRQLAGST-----APLSLVGYDL-----GQGIGGLILTAGAVFSIASVMLAG 297 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCc-CHHHhCCCC-----cHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988777 666654433 4554444332 334577889999999999999999
Q ss_pred hhhhhhhhhhhccCCCCCccccceecCCC-CchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 319 VTSNSRMAYAFSRDGAMPFSSFWHEVNSQ-DIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFR 397 (482)
Q Consensus 319 ~~~~sR~l~a~a~dg~lP~~~~f~~~~~~-~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 397 (482)
+...+|++++++|||.+| |+|+|+|+| ++|+++++++.+++.++... ..++.+.++.+....+.|.+.+++.
T Consensus 298 ~~~~sR~~~~~a~dg~lP--~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~-----~~~~~l~~~~~~~~~~~y~~~~~a~ 370 (429)
T TIGR00909 298 IYGTSRVLFAMSRDGLLP--GSLSKVHPKTGTPHMSIIIFSLTAALLASL-----VPLEGLAELTSIGTLIAFAAVNVAV 370 (429)
T ss_pred HHHHHHHHHHHHcCCCCc--HHHHHcCCCCCCcHHHHHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999988 99999999999888876541 2367888999999999999999999
Q ss_pred HHhcccc-CCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhheee
Q 011598 398 VTLARKS-FIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIF 467 (482)
Q Consensus 398 ~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (482)
+++|||+ +.+||||.| ..+..+.+.+..+.+..... .. .......++.+++..+|..
T Consensus 371 ~~lr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~g~~~y~~ 428 (429)
T TIGR00909 371 IILRRRRPDIQRAFRCP-LVPVLPVLVVSYCIYLLLNL-----------GP-GTTVWFLVWMLLGSVFYFI 428 (429)
T ss_pred HHHHhhcCCCCCCCCCC-cchHHHHHHHHHHHHHHHHc-----------cH-HHHHHHHHHHHHHHHHHHc
Confidence 8888655 667899998 77777776666555533221 11 1445566666666666643
No 31
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=1.2e-44 Score=372.11 Aligned_cols=452 Identities=16% Similarity=0.162 Sum_probs=304.6
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHH-HHHHHHHHHHHhhhhcCC-CChhhhHHHhhcCCCCCc
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGA-FTLFVGSSMAEICSSYPT-SGGLYYWSAKLAGPKWAP 79 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l-~~l~~a~~~ael~~~~p~-~Gg~y~~~~~~~~~~~g~ 79 (482)
+++.+++++.+.... ..+...+.+|+. .++.|+++++ ..++.+++++|+++++|+ +||.|+|++++ +||
T Consensus 12 ~~l~~~~~~~vig~~----~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~----~G~ 82 (496)
T PRK15238 12 IGLILMIFTSVFGFA----NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKS----VGP 82 (496)
T ss_pred HHHHHHHHHHHHhCC----chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH----cCc
Confidence 455566666444322 223345567885 6666666665 578999999999999997 89999999999 888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCCCcc----cchhHHHHHHHHHHHHHHHHhhcchhHHH
Q 011598 80 FASWMTGWFNIVGQWAVTTSVDFSL-AQMIQVIILLSTGGKNGGGYE----ASKYVVIAFHGGILLLHAIINSLPISILS 154 (482)
Q Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~l~~~g~~~~~ 154 (482)
.+||..+|.++..+........... .......+.. .....+. ..+.....++++.+++...+|++|+|..+
T Consensus 83 ~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~ 158 (496)
T PRK15238 83 KFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGK----DTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIA 158 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc----chhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 8999999988877655443322211 1111111111 0000010 11112335566666688999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-h--hhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhc
Q 011598 155 FFGQLAAAWNLVGVMVLMIL-I--PSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEET 231 (482)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~i~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~ 231 (482)
|++++.+..++...+++++. . +...+.+..++...+++.+..+.++.+ +.++..++..+.|+|.|+|..++++||+
T Consensus 159 ~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 237 (496)
T PRK15238 159 KVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQS-PIAVLSFVVFAIFAYGGIEAVGGLVDKT 237 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCcccc-chHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 99999888886543322222 1 111111111111112222111112322 3467788888999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCC-CCCCcHHHHHHHHhc----CCCC---------CC
Q 011598 232 KNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDND-AGGYAIAEIFYLAFK----NRFG---------SG 297 (482)
Q Consensus 232 k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~g---------~~ 297 (482)
||||||+|||+..+...+.++|++..+...... |+++..+.++. ....|.. ..+.++ +..| .+
T Consensus 238 ~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~g~~~~~~~~~g~ 314 (496)
T PRK15238 238 ENPEKNFPKGIIIAAIVISIGYSLAIFLWGVST-NWQQVLSNKSVNLGNITYV--LMNNLGYTLGHALGLSPAASLTLGV 314 (496)
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHHHHHHhcC-chhhcCCccccchhccHHH--HHHHHHHHHHHHhccchhhhhhhhH
Confidence 999999999999999999999999988877766 56555433210 0112211 112211 1111 12
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHh-hhc---hHH
Q 011598 298 VGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALT-YLG---SAV 373 (482)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~-~~~---~~~ 373 (482)
+...++++..+++.+++.++..++.+|.+++.+|||.+| |+|+|+||+|+|+++++++.++..++... ... .++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P--~~f~k~nk~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~ 392 (496)
T PRK15238 315 WFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWP--KKMTKLNKNGMPANAMWLQCIIVSVFILLVSFGGDAASA 392 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCccc--HHHHhhCcCCCcHHHHHHHHHHHHHHHHHHHhCchhHHH
Confidence 344577888999999999999999999999999999999 99999997799999999999888875432 222 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccc---chhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCch
Q 011598 374 AFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNLG---RYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYT 450 (482)
Q Consensus 374 ~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (482)
.|+.+.++.+....+.|.+.+.+++++||+++.+||||.+ ++....++++++++++...+.++++. +.++++|.
T Consensus 393 ~f~~l~~l~~~~~li~y~~~~~a~i~~r~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~~ 469 (496)
T PRK15238 393 FFNILTLMANVSMTLPYLFLAGAFPFFKKKKDIDRPFVVFKTKKSTLIATIVVVLVVGFANVFTIIQPV---IEGDYQST 469 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceecCCcceehhHHHHHHHHHHHHHHHheeCCC---cCCCHHHH
Confidence 6999999999999999999999999998877778887763 25567777777777776666655542 22457666
Q ss_pred HHHHHHHHHHhhhheeeeccccccc
Q 011598 451 PVAVCGLLILTVSAWIFSARHWFKG 475 (482)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~r~~~~~ 475 (482)
...+....++..+.|..|+||+++.
T Consensus 470 ~~~~~~~~i~~~~~~~~~~~~~~~~ 494 (496)
T PRK15238 470 FWMIGGPVFFSILAWIIYQNYEKKM 494 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhc
Confidence 6665666666666676666665543
No 32
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-45 Score=369.81 Aligned_cols=418 Identities=19% Similarity=0.235 Sum_probs=323.9
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-ChhhhHHHhhcCCCCCcc
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTS-GGLYYWSAKLAGPKWAPF 80 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~-Gg~y~~~~~~~~~~~g~~ 80 (482)
+++.++++|.+. .+|+|...|.++..+||.+.++++++++..+++.+++++|++.++|++ ||.|.|++|. +||.
T Consensus 35 rhl~miaiGg~I-GtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~----i~e~ 109 (554)
T KOG1286|consen 35 RHLQMLAIGGTI-GTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF----VGES 109 (554)
T ss_pred ccEEEEEeccee-ccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee----eCcH
Confidence 345566666544 789999999999999988899999999999999999999999999995 9999999999 8899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 011598 81 ASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLA 160 (482)
Q Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (482)
+||..+|.+++.|....+..+...+.++..... .+ ... ...+..+....-..++.+...+|+.|+|..+..+...
T Consensus 110 ~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~-~~~--~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~ 184 (554)
T KOG1286|consen 110 LAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--AS-LIG--ILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSL 184 (554)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--cc-ccc--ccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehH
Confidence 999999999999999999999999998887640 00 000 0000111111222345555667777777777777777
Q ss_pred HHHHHHHHHHHHHHhhhccccc--cc--ccccceeccccCCCCCCcc-hhhHHHhhHhHhHhhhcccccchhhhhccccc
Q 011598 161 AAWNLVGVMVLMILIPSVSTER--AS--AKFVFTHFNSDNGDGINSK-VYIFVLGLLMSQYTLTGYDASAHMTEETKNAD 235 (482)
Q Consensus 161 ~~~~~~~~l~~~i~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~ 235 (482)
.+.|++.++.+++.+++...+. .+ +...++.+.+| .+|.+. +.++..++..++|+|.|+|.++..+||+||||
T Consensus 185 ~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~--g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~ 262 (554)
T KOG1286|consen 185 AFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDP--GAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR 262 (554)
T ss_pred HHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCC--CCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc
Confidence 7777777776666665533211 11 11223333332 235555 57899999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhccCCccc--cccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHH
Q 011598 236 RNGPKGIISAIGISIIFGWGYILGITFAVTSIPN--LLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFF 313 (482)
Q Consensus 236 k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 313 (482)
|++|+|+..++..+.++|++..+.+...+| +++ +..+ .+.++++....++. +...+.-+++++++++..+
T Consensus 263 k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vp-y~~~~L~~~------~~~~spF~iai~~~-~~k~~~~ivna~iL~~~~s 334 (554)
T KOG1286|consen 263 KAIPKAIKQSLLRILLFYILSSIVLGLLVP-YNDPRLDPG------AALASPFVIAIGNA-GAKYLPHIVNAGILIGLLS 334 (554)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHheEEec-cCccccCCC------CccccHHHHHHhcc-CccccchhhhHHHHHHHHH
Confidence 999999999999999999999999999994 444 4322 34456665566555 3333555999999999999
Q ss_pred HhhhhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHHH
Q 011598 314 CGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALT-YLGSAVAFQAMVSIATIGLYIAYAL 392 (482)
Q Consensus 314 ~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~ 392 (482)
++|+.+++.+|.+++||+||.+| |+|+|+||+|+|+++.++..+++.+..+. .....++++++.++.+...++.|.+
T Consensus 335 ~~n~~~y~~sR~l~amA~~G~~P--k~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~ 412 (554)
T KOG1286|consen 335 SLNSSLYAGSRVLYALAKDGLAP--KFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTL 412 (554)
T ss_pred HHHHHhHHhHHHHHHHHhcCCcc--hHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999986553 3345678999999999999999999
Q ss_pred HHHHHHHhcccc------CCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 011598 393 PIFFRVTLARKS------FIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPI 442 (482)
Q Consensus 393 ~~~~~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (482)
++++++++|+.. ..+.|||.+ ..+...+.+.+.........++....|.
T Consensus 413 i~~~~i~~R~a~~~q~~~~~~~~~~s~-~~~~gs~~~~~~~~l~~~~~~~~~~~~~ 467 (554)
T KOG1286|consen 413 VALSHLRFRYAMKVQGRSLDELPYKSP-TGPYGSYYGLLVNILILLAQFYVAFFPI 467 (554)
T ss_pred HHHHHeeeeecccccCCCcccccccCC-CCCchhHHHHHHHHHHHHHHHhcccccc
Confidence 999999999764 234567776 5666777777776666666665555543
No 33
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=3.4e-44 Score=363.75 Aligned_cols=412 Identities=25% Similarity=0.373 Sum_probs=322.0
Q ss_pred CchhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHH-HHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCc
Q 011598 1 MLSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFT-LFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAP 79 (482)
Q Consensus 1 ~~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~-l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~ 79 (482)
+|++++++++.+. .+|++..+ ..+.+|+. .+++|++++++. ++.+++|+|+++++|++||.|.|+++. +||
T Consensus 3 ~~~~~~l~~~~~~-g~gi~~~~--~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~----~g~ 74 (426)
T PF13520_consen 3 LFSAIALVIGSII-GSGIFFSP--AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRA----FGP 74 (426)
T ss_dssp HHHHHHHHHHCHH-TTTTTTHH--HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHH----H-H
T ss_pred HHHHHHHHHHHHH-HHHHHHHH--HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhc----ccc
Confidence 3788899999885 47777766 66668885 888899998887 899999999999999999999999999 899
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011598 80 FASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQL 159 (482)
Q Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (482)
..|+..+|.+++.+....+..+....+++.+.+.. ++..++++...+++++++....+|++|.|..+|++++
T Consensus 75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 146 (426)
T PF13520_consen 75 FWGFIVGWLYWVAYILSLASVASSFASYLLSLFGP--------DLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNI 146 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG--------GGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cchhcccceeEEEeeccccccccchhhhhhhcccc--------ccccccchheeeeecccccceEeeechhhhhhhhhhh
Confidence 99999999999999888888888888887665422 2334566788889999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHhhhcccccccccc--cceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhcccccc
Q 011598 160 AAAWNL-VGVMVLMILIPSVSTERASAKF--VFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADR 236 (482)
Q Consensus 160 ~~~~~~-~~~l~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k 236 (482)
.+.+++ ..++++++.++...+.+..... ..++..+ +++ .++..++...+|+|.|+|.+++++||+|| |
T Consensus 147 ~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k 217 (426)
T PF13520_consen 147 LTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFP---SGW----PGFLAGFSVAFFAFSGFEAIASLAEENKN--K 217 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSC---SSS----SHHHHHHHHHGGGGTTTTHHHHGGGGSSS--H
T ss_pred hhhhhhhhhhhhheeEEEeeecccccccccccccccCC---ccc----cchhhHHHHHHhhcccccccccccccccc--h
Confidence 999999 5767777777665543221110 0111111 112 23788899999999999999999999887 8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhh
Q 011598 237 NGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGM 316 (482)
Q Consensus 237 ~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 316 (482)
|+||++..+.+.+.++|++.+++..... ++++....++ ..++. ..+.+..+ .++...++.+...++.+++.+
T Consensus 218 ~ip~ai~~~~~~~~i~y~l~~~~~~~~~-~~~~~~~~~~--~~~~~-~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~ 289 (426)
T PF13520_consen 218 TIPRAIIISIIIVAIIYILFSIALLGAL-PDDELANSSN--SPSPF-AVLASAVG----GSWLAIIVSIAAILSLFGSIN 289 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS-THCHHHTTTC--HHCHH-HHHHHHHH----CCTHHHHHHHHHHHHHHHHHH
T ss_pred hheeecccchhHHHHHHhhhhheeeecc-cchhhhcccc--ccccc-chhhcccc----ccccccccccccccccccccc
Confidence 9999999999999999999999999999 5555543321 00123 33333332 235889999999999999999
Q ss_pred hhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 317 SSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTY-LGSAVAFQAMVSIATIGLYIAYALPIF 395 (482)
Q Consensus 317 ~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~ 395 (482)
+.+.+.+|++++++|||.+| |+|+|+||+|+|++++++..+++.++.+.. ..+++.++.+.+..+....+.|.+.+.
T Consensus 290 ~~~~~~sR~l~~~a~d~~lP--~~~~~~~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 367 (426)
T PF13520_consen 290 AFIFGASRLLYAMARDGVLP--KWFAKVNKFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVIL 367 (426)
T ss_dssp HHHHHHHHHHHHHHHTTSSS--GGGGTTSSSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhcchhhcccccccccchh--hhhhhccccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999966999999999999997765433 223567899999999999999999999
Q ss_pred HHHHhccccCCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCch
Q 011598 396 FRVTLARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYT 450 (482)
Q Consensus 396 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (482)
+.++.|+|+++.+ |.+ ..++.++++.+.+++.....++|...+.+.....+.
T Consensus 368 ~~~~~~~~~~~~~--r~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (426)
T PF13520_consen 368 AVLFLRRKRPDLK--RIP-YRPPVGIIGIIIILFVIIASFFPLINPATWASLIYA 419 (426)
T ss_dssp HHHHTHHHSCSSG--H-H-HHHHHHHHHHHHHHHHHHHCCCHHSHCCCC-HCCHH
T ss_pred HHHHHhhhcCCcC--CCC-cchHHHHHHHHHHHHHHHHHHHhccccchhhhhhEE
Confidence 9999987753321 122 346788888888888877777765544444444443
No 34
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=2.7e-43 Score=378.60 Aligned_cols=402 Identities=15% Similarity=0.088 Sum_probs=303.9
Q ss_pred hhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCChhhhHHHhhcCCCCCcchhHHHHHHHHHH
Q 011598 14 VLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSS-YPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVG 92 (482)
Q Consensus 14 ~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~-~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~ 92 (482)
..+++|..++..+..+|...+++.|+++++++++++++|+|+++. .|++||.|.|++|+ +||..|+..||.++++
T Consensus 93 iGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisra----lGp~~Gf~iG~~~~la 168 (953)
T TIGR00930 93 WGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRS----LGPEFGGSIGLIFAFA 168 (953)
T ss_pred heeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH----hCcHHHHHHHHHHHHH
Confidence 367899999999999998667889999999999999999999998 99999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 011598 93 QWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLM 172 (482)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~ 172 (482)
+.+..+.++..+++++..++.... ......+.....+++.+++++++++|++|+|..+|+|.++++++++.++.++
T Consensus 169 ~~va~A~~~~Gf~eyl~~lf~~~~----~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q~vl~vi~ll~ll~~i 244 (953)
T TIGR00930 169 NAVAVAMYVVGFAETVLDLLRENG----SKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENKAQVLFLVIVLLSILNIF 244 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc----cccccCccccchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998874311 0001111123467788899999999999999999999999999999988887
Q ss_pred HHhhhccccccccc---ccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHHHHHH
Q 011598 173 ILIPSVSTERASAK---FVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGIS 249 (482)
Q Consensus 173 i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~ 249 (482)
+.++....+..... +..+.+.+.-..+++....++...+...+++|+|+|..++++||+|||+|++|||++.+++++
T Consensus 245 ig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~r~IPratl~ai~i~ 324 (953)
T TIGR00930 245 VGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTT 324 (953)
T ss_pred heeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHH
Confidence 76654322111000 001111110001122211236666677778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCccccccCCCC--C--CCC---------cHHHHHH---HHhcCCCCCCchhHHHHHHHHHHHHH
Q 011598 250 IIFGWGYILGITFAVTSIPNLLSEDND--A--GGY---------AIAEIFY---LAFKNRFGSGVGGIVCLGVVAVAIFF 313 (482)
Q Consensus 250 ~~~y~l~~~~~~~~~~~~~~~~~~~~~--~--~~~---------~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~ 313 (482)
+++|++..+.+..+.+ .+...+..+. . .+. |....+. ...... .....++.+++++++++
T Consensus 325 ~vlYllv~~~~~~~~~-~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~---~~~~~lI~ig~~~stls 400 (953)
T TIGR00930 325 TVVYLGSVVLFGACVV-RDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLV---SPFPPLITAGIFSATLS 400 (953)
T ss_pred HHHHHHHHHHHHcccc-HhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhh---hhhHHHHHHHHHHHHHH
Confidence 9999999988777663 2221110000 0 000 1101100 111111 11456889999999999
Q ss_pred HhhhhhhhhhhhhhhhccCCCCCccccceecCCC-CchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 011598 314 CGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQ-DIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYAL 392 (482)
Q Consensus 314 ~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~-~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 392 (482)
+.++++.+++|+++++||||.+|+.++|+|+|+| ++|++|++++++++.+++++ ..++.+..+.+..+++.|++
T Consensus 401 s~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili-----~~l~~ia~lis~~fLl~Y~l 475 (953)
T TIGR00930 401 SALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILI-----AELNTIAPIISNFFLASYAL 475 (953)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988899999988 99999999999999987763 35788899999999999999
Q ss_pred HHHHHHHhccccC-CCCC-ccccchhhHHHHHHHHHHHHHHHHh
Q 011598 393 PIFFRVTLARKSF-IPGP-FNLGRYGIVVGWIAVLWVATISVLF 434 (482)
Q Consensus 393 ~~~~~~~~r~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
.+++.++.|+++. ..|| ||. +.+.++.++.+.|+++++..
T Consensus 476 vnla~~~l~~~~~p~~RP~fk~--~~~~~sllG~l~c~~lmf~i 517 (953)
T TIGR00930 476 INFSCFHASLLRSPGWRPRFKY--YHWWLSLLGASLCCAIMFLI 517 (953)
T ss_pred HHHHHHHHhhccCCCCCCcccc--chHHHHHHHHHHHHHHHHHH
Confidence 9999998764331 1233 443 56778888888888776654
No 35
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=2.2e-45 Score=376.80 Aligned_cols=412 Identities=19% Similarity=0.255 Sum_probs=313.7
Q ss_pred hhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhH
Q 011598 4 NFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASW 83 (482)
Q Consensus 4 ~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~ 83 (482)
+.+++++++.+ +|+|...+..+..+||.+.+++++++++++++++.+++||++++|++||.|.|++|. +||..|+
T Consensus 2 v~~~~ig~~ig-~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~----lg~~~Gf 76 (478)
T PF00324_consen 2 VFMISIGGIIG-TGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRG----LGPALGF 76 (478)
T ss_pred EEEeeHHHHHH-HHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhc----cCCcCCc
Confidence 45677888776 789999999999999976899999999999999999999999999999999999999 8888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHH-HHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 011598 84 MTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVV-IAFHGGILLLHAIINSLPISILSFFGQLAAA 162 (482)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 162 (482)
..+|.+|+.+....+........++... .... ..+ +.+.. ..+..+.+++...+|++|+|.++|++.++..
T Consensus 77 ~~gw~y~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~-----~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~ 148 (478)
T PF00324_consen 77 AAGWAYWLSYIAAIAAEATAAGSFLQFW-GYFP--GLP-----STWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTI 148 (478)
T ss_pred eeeHHHHHHHHHHHHhhhhhhhhhhccc-cccc--ccc-----ccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHH
Confidence 9999999998887777666655544432 1100 000 01111 1456677888899999999999999999999
Q ss_pred HHHHHHHHHHHHh-hhcccccccccc-------cceeccccCCC-CCCcchhhHHHhhHhHhHhhhcccccchhhhhccc
Q 011598 163 WNLVGVMVLMILI-PSVSTERASAKF-------VFTHFNSDNGD-GINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKN 233 (482)
Q Consensus 163 ~~~~~~l~~~i~~-~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~ 233 (482)
+|++.++.+++.+ .....+.++.+. .+++..+++.. +-..+..+++.++..++++|.|+|.++..+||+||
T Consensus 149 i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~ 228 (478)
T PF00324_consen 149 IKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKN 228 (478)
T ss_pred HhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCC
Confidence 9999999988888 322221111111 01111111100 00111466999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHH
Q 011598 234 ADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFF 313 (482)
Q Consensus 234 P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 313 (482)
||||+|||+..+++.+.++|++.++...... ++++.........++|+.... +..+.++...++++..+++.++
T Consensus 229 P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~-~~~~~~~~~~~~~~sp~~~~~-----~~~~~~~~~~i~~~~~l~s~~s 302 (478)
T PF00324_consen 229 PRKTIPRATLLSVLRIGVFYVLTSYALTLAV-PYDNLGLTAASNSASPFVIAA-----QYSGGPWLAWIVNAGILISAFS 302 (478)
T ss_pred chhhhhhHhhhhhhhhhhhhhhhhhhccccc-Cccchhhccccccccchhhhh-----hhcccccccceecccchhhhhh
Confidence 9999999999999999999999999999888 455443222211123443222 2235556888999999999999
Q ss_pred HhhhhhhhhhhhhhhhccCCCCCccccceecCCC-CchHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHH
Q 011598 314 CGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQ-DIPINAVWLSAFISFCMALT-YLGSAVAFQAMVSIATIGLYIAYA 391 (482)
Q Consensus 314 ~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~-~~P~~ai~~~~~i~~i~~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 391 (482)
+.++.+++.+|++++|+|||.+| +++.++|+| |+|++|++++.+++.+..+. .....+.++.+.+..+...+..|.
T Consensus 303 ~~~~~~~~~sR~l~ama~dg~lP--~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (478)
T PF00324_consen 303 SANASLYAASRLLYAMARDGLLP--KKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYI 380 (478)
T ss_pred hhhhhhcccceeehhhhhhhhhh--hhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHH
Confidence 99999999999999999999999 888888777 99999999999999886643 223346788999999999999999
Q ss_pred HHHHHHHHhccccC------CCCCccccchhhHHHHHHHHHHHHHHHHhcCC
Q 011598 392 LPIFFRVTLARKSF------IPGPFNLGRYGIVVGWIAVLWVATISVLFSLP 437 (482)
Q Consensus 392 ~~~~~~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (482)
+.+++.+++||+.+ ++.++|.+ ..+...+..+..+........+.
T Consensus 381 ~~~~s~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~~~~~ 431 (478)
T PF00324_consen 381 LINISYIRFRKKFKYRGRSISELPFKSP-FGPMFAILGIAALIIILIFLGFY 431 (478)
T ss_pred hhhhhhhhhhhhhccccccccccChhhh-hhHHhHHHHHHHHHHHhhhhhhc
Confidence 99999998887631 12367766 66777776666666655555443
No 36
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-41 Score=347.24 Aligned_cols=395 Identities=23% Similarity=0.356 Sum_probs=313.6
Q ss_pred hhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhH
Q 011598 4 NFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASW 83 (482)
Q Consensus 4 ~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~ 83 (482)
.+.++.+.+.. .|++..++.....+ +. ..++|+++++++.+.+++++|+++.+|++||.|.|+++. +|+..++
T Consensus 20 ~~~~~~~~~~~-~gif~~~~~~~~~~-~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~----~g~~~~~ 92 (466)
T COG0531 20 LTALGVGSMIG-SGIFALPGSAAGLA-PA-AILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRA----LGPRLGF 92 (466)
T ss_pred HHHHHHHhhHh-hhhHhhhhhHHHhc-hH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhh----cCcchHH
Confidence 45555555554 88999988888766 53 555599999999999999999999999999999999999 8888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 011598 84 MTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAW 163 (482)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 163 (482)
.++|.+++.+....+.......+++...++... .+..+.+....++.+++++...+|++|+|..++++.+.+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~ 166 (466)
T COG0531 93 LAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG------LLSIGPLLIILIALALIALLTLLNLRGIKASAKINSIITIL 166 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch------hhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999988888888887777654210 12222267888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchHHH
Q 011598 164 NLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGII 243 (482)
Q Consensus 164 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~ 243 (482)
|++.++.+.+.++.+.+.+..+. +.+. + . ..+...++..++...+|+|.|+|.+++++||+|||+|++||+++
T Consensus 167 ~i~~~i~~~i~~~~~~~~~~~~~--~~~~-~---~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii 239 (466)
T COG0531 167 KIIILLIFIILGLFAFGFSNGNL--FAPF-N---P-GGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAII 239 (466)
T ss_pred HHHHHHHHHHHHHHHhCcccccc--CCCc-c---c-ccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHH
Confidence 99999999998877665433111 1111 1 0 11223468889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhh
Q 011598 244 SAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNS 323 (482)
Q Consensus 244 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 323 (482)
.+.+.+.++|++......... +.+++... . . ..|..+......+ .+...++.+..+.+.+++.+++..+.+
T Consensus 240 ~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~-~-~-~~p~~~~~~~~~g-----~~~~~~i~~~~~~~~~~~~~~~~~~~s 310 (466)
T COG0531 240 LSLLIVLILYILGALVIVGVL-PAGDLAAS-A-P-SAPLALAALFGGG-----NWGAIIIAILALLSLFGSLLAWILAVS 310 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-cHHHHhcc-C-C-CccHHHHHHHcCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988 44444332 1 1 1455444433332 347889999999999999999999999
Q ss_pred hhhhhhccCCCCCccccceecCCC-CchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011598 324 RMAYAFSRDGAMPFSSFWHEVNSQ-DIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLAR 402 (482)
Q Consensus 324 R~l~a~a~dg~lP~~~~f~~~~~~-~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 402 (482)
|.+++++|||.+| ++|+|+|+| ++|+++++++.+++.++..........++.+.++.+....+.|.+..++..++||
T Consensus 311 R~~~~~ardg~lP--~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~ 388 (466)
T COG0531 311 RVLYAMARDGLLP--KFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRR 388 (466)
T ss_pred HHHHHHHhCCCcc--HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999 999999999 7999999999999994333222225678999999999999999999999999987
Q ss_pred cc-CCCCCccccch--hhHHHHHHHHHHHH
Q 011598 403 KS-FIPGPFNLGRY--GIVVGWIAVLWVAT 429 (482)
Q Consensus 403 ~~-~~~~~~~~~~~--~~~~~~~~~~~~~~ 429 (482)
|+ +++|++|.++. .+..+.+....+..
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (466)
T COG0531 389 KKPDLKRPFRLPLAPLIPILGIVAVLLLLY 418 (466)
T ss_pred cCCCCCCcccccccchHHHHHHHHHHHHHH
Confidence 74 56788887632 23444444444444
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.96 E-value=1.8e-26 Score=230.26 Aligned_cols=370 Identities=9% Similarity=-0.002 Sum_probs=262.6
Q ss_pred HHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHHH
Q 011598 11 IISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNI 90 (482)
Q Consensus 11 ~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~ 90 (482)
+....+|++..|+...+.+++. .++..+++++.+...+++++|+++++|++||.|.|.++. +||..++..+|.++
T Consensus 8 gt~IGaGIl~lP~~~a~~g~~~-~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~----~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 8 GTTIGAGMLALPTSTAGAWFIW-TLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDL----LGKTGNIIAGLSLL 82 (381)
T ss_pred hhhHhHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH----hCHHHHHHHHHHHH
Confidence 3456899999999877765553 666778899999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 011598 91 VGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMV 170 (482)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~ 170 (482)
+.+......+....++++..++..+. ....+.....+++.+++..+|.+|.|..+|+|.+++..++..+++
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~ 153 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYF---------GFPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFAL 153 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhc---------CCCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777788887765411 111233445566777888999999999999999999999998888
Q ss_pred HHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhccc-ccchhhhhccccccccchHHHHHHHHH
Q 011598 171 LMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYD-ASAHMTEETKNADRNGPKGIISAIGIS 249 (482)
Q Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e-~~~~~~~E~k~P~k~ip~ai~~~~~~~ 249 (482)
+++.++.+.+.+ + +.+..+ ...+..+...++...+++| |+| ....+.+|.||++|++||+++.+..++
T Consensus 154 ~ii~~~~~~~~~---~--~~~~~~-----~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~ 222 (381)
T TIGR00837 154 VFSGLLPHVKGD---L--LLDVAL-----DTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIA 222 (381)
T ss_pred HHHHHHhhccHH---H--HhcCcc-----ccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 777665433211 1 111111 0011234677778888888 565 588889999877999999999999999
Q ss_pred HHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011598 250 IIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAF 329 (482)
Q Consensus 250 ~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 329 (482)
.++|++......... +.+++.+..... ... +...+.++...+.++...++.+...++..++.++...+..+.+.
T Consensus 223 ~~lY~l~~~~~~g~~-~~~~l~~~~~~~--~~~-~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~-- 296 (381)
T TIGR00837 223 LVLYILWQLATMGNL-PRSEFLPIIAKG--GNL-DGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLA-- 296 (381)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHcC--CCh-HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999988 566654221100 111 12223333334445577788899999999999988887774433
Q ss_pred ccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 011598 330 SRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGP 409 (482)
Q Consensus 330 a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 409 (482)
+.|++.|+++.|..+.+++.+...++.. ..+......+...+....++...++.+..++.|||+ .+.+
T Consensus 297 ---------~~~~~~~~~~~~~~~~~~~~~~pl~~a~--~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~-~~~~ 364 (381)
T TIGR00837 297 ---------DLFKFDDSKKGRFKTGLLTFLPPLVFAL--FYPEGFLYAIGYAGLAATIWAVIIPALLAWKARKKF-PNAG 364 (381)
T ss_pred ---------HHhCCCcccCCCchhhhhhHHhHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC
Confidence 4444444443366777777777776554 333344466666666666666777777777777654 3458
Q ss_pred ccccchhhHHHHHHH
Q 011598 410 FNLGRYGIVVGWIAV 424 (482)
Q Consensus 410 ~~~~~~~~~~~~~~~ 424 (482)
||.| ..+....+..
T Consensus 365 ~~~~-~~~~~~~~~~ 378 (381)
T TIGR00837 365 YRVW-GGNKLLLLVL 378 (381)
T ss_pred cccc-CChHHHHHHH
Confidence 9998 6666654443
No 38
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.7e-25 Score=221.16 Aligned_cols=397 Identities=15% Similarity=0.143 Sum_probs=285.1
Q ss_pred HHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CChhhhHHHhhcCCCCCcchhHHHHHHHHHHHHHH
Q 011598 18 ITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPT-SGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAV 96 (482)
Q Consensus 18 i~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~-~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 96 (482)
+|.-..+.+..+|....+.-.+++++..+.++.+...+++.=-. +||.|..++|. +||..|-..|.++.++..+.
T Consensus 133 lFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRs----LGPEFGgAVGlcFYLgtT~A 208 (1075)
T KOG2082|consen 133 LFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRS----LGPEFGGAVGLCFYLGTTVA 208 (1075)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecc----cCccccceeeehhhhhhHHH
Confidence 47777788877777655665666666677777777777764322 79999999999 77777888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcc----cchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 011598 97 TTSVDFSLAQMIQVIILLSTGGKNGGGYE----ASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLM 172 (482)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~ 172 (482)
.+++.....+.+..++.++.+....++.. .......+.+.+++++.+++-..|+|...|+..++..+.++.++.+.
T Consensus 209 aaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSIlaiy 288 (1075)
T KOG2082|consen 209 AAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFLACVILSILAIY 288 (1075)
T ss_pred HHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999988776544443332222 22234567899999999999999999999999999999999988887
Q ss_pred HHhhhccccc-------------------c---------cc--------------------ccc----------------
Q 011598 173 ILIPSVSTER-------------------A---------SA--------------------KFV---------------- 188 (482)
Q Consensus 173 i~~~~~~~~~-------------------~---------~~--------------------~~~---------------- 188 (482)
+.++-...+. + .+ ++.
T Consensus 289 aG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y~~~nnvt~i~GipG~a~ 368 (1075)
T KOG2082|consen 289 AGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEYFSKNNVTEIQGIPGLAS 368 (1075)
T ss_pred HhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccccccccceeecCCcchhh
Confidence 7765432220 0 00 000
Q ss_pred ---ceeccc------------------cCCCC----CCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchHHH
Q 011598 189 ---FTHFNS------------------DNGDG----INSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGII 243 (482)
Q Consensus 189 ---~~~~~~------------------~~~~~----~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~ 243 (482)
.+++++ +|..+ ..+-..+|..-+.+-+-+.+|+-+.++.+++.|||+|.+|.+.+
T Consensus 369 g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI 448 (1075)
T KOG2082|consen 369 GVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTI 448 (1075)
T ss_pred hhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCCCCccccchhhcCchhhh
Confidence 000000 00000 00001223333333344889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHH-HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhh
Q 011598 244 SAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIA-EIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSN 322 (482)
Q Consensus 244 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (482)
.+++....+|+...+.+..++ +..-+.+... ..+. ......+..+ ..+++.+..++|++|+.+..+.++
T Consensus 449 ~AilTTS~vYlssv~lFGa~i-~~~vLRDKfG----~sv~g~lVva~laWP-----sPwVi~IGsFlST~GAgLQsLtgA 518 (1075)
T KOG2082|consen 449 AAILTTSFVYLSSVVLFGACI-EGVVLRDKFG----QSVGGNLVVATLAWP-----SPWVIVIGSFLSTCGAGLQSLTGA 518 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-cchhhhhhhh----hhccCcEEEEEecCC-----CceeeehhHHHHHhHHHHhhhcCc
Confidence 999999999999999998888 3222221111 0000 0001112222 456888999999999999999999
Q ss_pred hhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 011598 323 SRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLA- 401 (482)
Q Consensus 323 sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r- 401 (482)
+|++++.|||+.+|+.+.|+|.+++|.|.+|++++++++...+++ .+.+.+..+-+++++..|++..+++....
T Consensus 519 PRLLQAIAkD~IiPfL~~F~~~~~ngEPt~aLlLT~~Ice~gILi-----gslD~iApilsmFFLMCY~fVNLaCavqtL 593 (1075)
T KOG2082|consen 519 PRLLQAIAKDDIIPFLAPFGHGKANGEPTWALLLTAIICECGILI-----GSLDLIAPILSMFFLMCYLFVNLACAVQTL 593 (1075)
T ss_pred HHHHHHHhhcCccchhhhhccccCCCCccHHHHHHHHHHHhhhee-----echhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999997772 34667777778888888888666665432
Q ss_pred -cccCCCCCccccchhhHHHHHHHHHHHHHHHHhc
Q 011598 402 -RKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFS 435 (482)
Q Consensus 402 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (482)
|.++.+.+||. +++.++.+++.+|+++++...
T Consensus 594 LrtPnWRPRfky--yHW~LSflG~sLC~~iMF~~S 626 (1075)
T KOG2082|consen 594 LRTPNWRPRFKY--YHWSLSFLGASLCLAIMFISS 626 (1075)
T ss_pred hcCCCCCccchh--hhhHHHHHHHHHHHHHHHHHH
Confidence 34444444675 688899999999999888763
No 39
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.88 E-value=4.7e-21 Score=188.66 Aligned_cols=387 Identities=17% Similarity=0.130 Sum_probs=274.2
Q ss_pred HHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CChhhhHHHhhcCCCCCcchhHHHHHHHHHHHHHH
Q 011598 18 ITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPT-SGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAV 96 (482)
Q Consensus 18 i~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~-~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 96 (482)
+|.-.+..+..+|-...+.-.+++--+.+.+.++...+++.=-. .||.|..++|.. ||..|--.|....++.++.
T Consensus 86 lFLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsL----GpEfGGSIGllFf~anV~~ 161 (945)
T KOG1288|consen 86 LFLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSL----GPEFGGSIGLLFFVANVFN 161 (945)
T ss_pred HHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEccc----CcccCCeeeehhhHHHHhc
Confidence 57788888888888756666677767777777888777776544 689999999994 4445555666667777888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcc-cchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011598 97 TTSVDFSLAQMIQVIILLSTGGKNGGGYE-ASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILI 175 (482)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~ 175 (482)
.++....+.+-+.+-++......+..... ...|+..+.+..++.+...++++|...++|..++..+...+.+..+.+..
T Consensus 162 ~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas~i~f~~is~s~~si~iS~ 241 (945)
T KOG1288|consen 162 CAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKASNILFVVISVSLFSIPISF 241 (945)
T ss_pred chhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHHHHHhhhhhee
Confidence 88888888888877765322111111122 34567777788888899999999999999999888877777666666655
Q ss_pred hhcccccccc------------------cccceeccc----cCCCCCCcc-hhhHHHhhHhHhHhhhcccccchhhhhcc
Q 011598 176 PSVSTERASA------------------KFVFTHFNS----DNGDGINSK-VYIFVLGLLMSQYTLTGYDASAHMTEETK 232 (482)
Q Consensus 176 ~~~~~~~~~~------------------~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~a~~G~e~~~~~~~E~k 232 (482)
++..+.+... .+.++.+.+ ....+...+ ...+...+.+.+-+.+|.-+.+++++|.|
T Consensus 242 ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgELk 321 (945)
T KOG1288|consen 242 IFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGELK 321 (945)
T ss_pred EEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCcccc
Confidence 4433221110 000000000 000001111 13355556666667899999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 011598 233 NADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIF 312 (482)
Q Consensus 233 ~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 312 (482)
+|.|.+||+.+.++....++|+++.+.+.+..| ...+ ..+- +++ ..+ .....++.+.+....+
T Consensus 322 ~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~-r~~L-q~dy--------~v~-~~i------sl~p~fi~iGi~sttl 384 (945)
T KOG1288|consen 322 APSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVP-RTLL-QNDY--------DVM-MHI------SLHPPFILIGILSTTL 384 (945)
T ss_pred CccccCCccchHHHHHHHHHHHHHHHHhccCcc-hHHh-hhch--------hhe-eec------cccchHHHHHHHHHHH
Confidence 999999999999999999999999999988883 3333 2221 111 111 1134577888889999
Q ss_pred HHhhhhhhhhhhhhhhhccCCCCCccccceecCCC-CchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 011598 313 FCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQ-DIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYA 391 (482)
Q Consensus 313 ~~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~-~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 391 (482)
.+.++.+.+++|++.++|||+++|+...|+|...+ +.|+.|+.++..++.+..+ .+.+|.+..+.++.+++.|.
T Consensus 385 fss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll-----~g~~N~iA~~it~~FLlty~ 459 (945)
T KOG1288|consen 385 FSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLL-----WGDINKIASMITMTFLLTYG 459 (945)
T ss_pred HHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988899999888 9999999999999998777 35789999999999999999
Q ss_pred HHHHHHHHhcccc--CCCCCccccchhhHHHHHHHHHHHHHHH
Q 011598 392 LPIFFRVTLARKS--FIPGPFNLGRYGIVVGWIAVLWVATISV 432 (482)
Q Consensus 392 ~~~~~~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (482)
...++++.++... +-+..||.- .+--..++.+.++.+++
T Consensus 460 ~vNLacl~LeissAPNFRPtFkyF--~w~TclvG~l~s~~mMf 500 (945)
T KOG1288|consen 460 AVNLACLLLEISSAPNFRPTFKYF--NWHTCLVGVLLSLGMMF 500 (945)
T ss_pred HHHHHHHHhhhccCCCCCchhhhh--hHHHHHHHHHHHHhhhh
Confidence 9999999887544 222235542 22233444444444433
No 40
>PHA02764 hypothetical protein; Provisional
Probab=99.86 E-value=9.2e-20 Score=164.96 Aligned_cols=267 Identities=15% Similarity=0.177 Sum_probs=171.1
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhc-cccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcc
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGL-NFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPF 80 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~-~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~ 80 (482)
+|++..+++.++...++-. +.... ..-|.. .+.+|+++++++++.+++|+|+++++|++||.|+|.+|+ +||.
T Consensus 17 lDAF~~Nl~~m~~Gi~Is~-~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISRA----FGP~ 90 (399)
T PHA02764 17 LDIFSINLLYMGILSGISY-PLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTA----FSSK 90 (399)
T ss_pred HHHHHHHHHhhccchhHHH-HHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHh----hCcc
Confidence 6888888888887775521 22111 124554 789999999999999999999999999999999999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccch-hHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 011598 81 ASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASK-YVVIAFHGGILLLHAIINSLPISILSFFGQL 159 (482)
Q Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (482)
.|++.||..|..+....+..+- +. .-++..++ .....+. .-......+-..|.|.+.|...+
T Consensus 91 ~GFLvG~a~WLtl~~G~Pal~~--------l~--------~~~~~i~~~~~~f~~~-~s~~~i~~~i~~~~~~~~~~v~i 153 (399)
T PHA02764 91 FYTIFGISLWLTYVLSQPILGD--------LV--------LLNFNIQNQFEQFLIV-ESLFPIVLLIIANKKIYAKIVDI 153 (399)
T ss_pred HHHHHHHHHHHHHHhhcchhhh--------ee--------eeeeeeHHHHHHHHHH-HHHHHHHHHHHcccHHHHHHHHH
Confidence 9999999999887655543221 10 00011111 1111111 11222233445568888887776
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccc
Q 011598 160 AAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGP 239 (482)
Q Consensus 160 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip 239 (482)
+...... +..+...+ +.+...++++- + .....++..-.-+|.=.|+..+.++|.||.+|...
T Consensus 154 l~~a~~i------~aif~~~~---s~n~~~~~f~~------s---nt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~ 215 (399)
T PHA02764 154 LAIAQII------IAIFIAFK---SFNFQYQNFTI------S---NTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSM 215 (399)
T ss_pred HHHHHHH------HHHHhhcc---ceeEEEcceee------h---HHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhh
Confidence 5554433 22222221 11111122211 1 11444555555566667999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 011598 240 KGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSV 319 (482)
Q Consensus 240 ~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 319 (482)
.+-..+...+.++-+.-+ ++++ . +.........++-+....
T Consensus 216 ~gyf~s~~~~~~~~ii~s---------y~n~-------------~-----------------il~~~~~~w~~~y~~~~~ 256 (399)
T PHA02764 216 IGYFVSYGIVAILSIIDS---------YSNL-------------N-----------------ILFALMPIWFFSYMPIAN 256 (399)
T ss_pred hhhHHHHHHHHHHHHHHh---------hhhH-------------H-----------------HHHHHHHHHHHhheeeec
Confidence 888877665555333211 1111 1 112225566667777777
Q ss_pred hhhhhhhhhhccCCCCCccccceecCCCCchH
Q 011598 320 TSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPI 351 (482)
Q Consensus 320 ~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~ 351 (482)
-..||++++|+-|+.+| |.|+|.||+ +|.
T Consensus 257 ~~~srli~~~~fd~~lp--e~f~k~~~n-v~~ 285 (399)
T PHA02764 257 KIQSRLIQTMSFDKVLP--EKFSKINPN-VLL 285 (399)
T ss_pred chHHHHHHHHHhhhhch--HHHhccCCC-cee
Confidence 78999999999999999 999999976 565
No 41
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.83 E-value=8.9e-18 Score=166.26 Aligned_cols=284 Identities=13% Similarity=0.064 Sum_probs=202.5
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
++.+++.++.+. .+|++..|+...+.+|+. ++++++++++.+++.+++++|+++++|+. +.+.|.++. +|+..
T Consensus 6 ~q~~~l~~~~~i-G~gil~~P~~~~~~a~~~-~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~----~Gk~~ 78 (359)
T TIGR00912 6 KQLIFLISSTMI-GSGLLTLPALVSQSAGQD-GWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKY----LGKIL 78 (359)
T ss_pred HHHHHHHHHHHH-HHHHHhhhHHHHhccCCC-eeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHH----hhHHH
Confidence 456666666555 677999999999988985 89999999999999999999999999987 699999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA 161 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (482)
|+..+|.++.......+......++++.... .+..+...+...++++....+..|+|..+|++.+..
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------l~~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~ 145 (359)
T TIGR00912 79 GRLLSILFILYFFLIAAYLIRIFADFIKTYL-------------LPRTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILL 145 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------cCCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 9999998887655555555555555554432 112244556677778888899999999999999999
Q ss_pred HHHHHHH-HHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhH-hHhHhhhcccccchhhhhccccccccc
Q 011598 162 AWNLVGV-MVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLL-MSQYTLTGYDASAHMTEETKNADRNGP 239 (482)
Q Consensus 162 ~~~~~~~-l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~G~e~~~~~~~E~k~P~k~ip 239 (482)
..++... +++..... +..+.+ ...+..+ +++ .....+.. ...++|.|+|......+|+||| |+.|
T Consensus 146 ~~~i~~~~~il~~~~~---~~~~~~--~l~P~~~---~g~----~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~ 212 (359)
T TIGR00912 146 IIFLILFILVLILLAP---KLGNIK--NLLPVLE---NGL----SPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIK 212 (359)
T ss_pred HHHHHHHHHHHHHHhc---ccccHH--HccCccc---cCc----HHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhH
Confidence 8887663 33322211 111111 1222222 112 23666665 7889999999999999999996 5699
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHHHHHhh
Q 011598 240 KGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGV---GGIVCLGVVAVAIFFCGM 316 (482)
Q Consensus 240 ~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~ 316 (482)
|++..+...+.++|.+......... ++++..+.. .|..+..... +-. .. ...++......+.+....
T Consensus 213 k~~~~~~~~~~~ly~~~~~~~i~~l-g~~~~~~~~-----~P~~~~~~~i-~~~---~f~eR~e~~~~~~w~~~~f~~~~ 282 (359)
T TIGR00912 213 KSIIKAIIIGVLLYILTTFVSISVF-GGNVTKNLY-----WPTLELIKLI-NIG---DFIERFELIVMTFWVFIIFVKIA 282 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhee-cHHHhhhhc-----ccHHHHHHHh-hHh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988 555554433 4554433221 100 01 334555556666677777
Q ss_pred hhhhhhhhhhhh
Q 011598 317 SSVTSNSRMAYA 328 (482)
Q Consensus 317 ~~~~~~sR~l~a 328 (482)
..++..++.+.+
T Consensus 283 ~~~~~~~~~~~~ 294 (359)
T TIGR00912 283 FYLYIAVKGLSK 294 (359)
T ss_pred HHHHHHHHHHHH
Confidence 777777777654
No 42
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.83 E-value=1e-17 Score=163.19 Aligned_cols=340 Identities=14% Similarity=0.101 Sum_probs=236.1
Q ss_pred HhhhhHHHHhHhhhccccChh--hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHH
Q 011598 12 ISVLTGITTLYNTGLNFGGPI--SLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFN 89 (482)
Q Consensus 12 ~~~~~gi~~~~~~~~~~~G~~--~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~ 89 (482)
+.-.+|.+.-|+..-+.+|.. .+.++|+++++...+.+++ +.|++||.|.+.++. +||..|++.+|..
T Consensus 7 mffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~----~g~~f~~lf~~~~ 76 (378)
T TIGR00796 7 LFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSAR----IGKVFGILFTVIL 76 (378)
T ss_pred HHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHH----hChHHHHHHHHHH
Confidence 345678888888888777753 2477899999988888877 889999999999999 8888999999987
Q ss_pred HHHH-HHH----HHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 011598 90 IVGQ-WAV----TTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWN 164 (482)
Q Consensus 90 ~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 164 (482)
++.. ... .+..++..+ +..+++ .. .+.....+.++++..+...+|+++.|...+++++++-++
T Consensus 77 ~l~iGP~~aiPRtaa~s~e~~--i~p~~~-------~~---~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~l 144 (378)
T TIGR00796 77 YLTIGPLFAIPRTATVSFEMG--IAPLLH-------SP---TSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPAL 144 (378)
T ss_pred HHHHHhchhhhHHHHHHHHHH--HHhccC-------cc---cchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHH
Confidence 7554 222 122222211 222111 00 012234455666677777799999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhh-------cccccchhhh-hcccccc
Q 011598 165 LVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLT-------GYDASAHMTE-ETKNADR 236 (482)
Q Consensus 165 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-------G~e~~~~~~~-E~k~P~k 236 (482)
++.++.+++.++.+...+...+ .++ ..+ ...+..++....++++ |+-...++.+ |.|||||
T Consensus 145 Li~l~~lii~g~~~p~g~~~~~--~~~--------~~~-~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~ 213 (378)
T TIGR00796 145 LVTLLALIIKALLWPAGPILAA--SGA--------YAS-QQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKK 213 (378)
T ss_pred HHHHHHHHHHHHHcCCCCcCCc--ccc--------ccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999987643221110 011 100 0127788888888899 9999999988 9999999
Q ss_pred ccchHHHHHH-HHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHh
Q 011598 237 NGPKGIISAI-GISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCG 315 (482)
Q Consensus 237 ~ip~ai~~~~-~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 315 (482)
+.|+.+..++ ..+.+.|+...+++.... +.++..+.+ +.+....+.....+|+. ...++.+.+.++|+++.
T Consensus 214 ~~~~~i~~G~ia~i~l~~vY~~L~~lGa~-~~~~~~~~~--~~~~~l~~~a~~~~G~~-----G~~ll~i~v~lACLtT~ 285 (378)
T TIGR00796 214 ITKYTIKAGLIAAVLLAFIYLSLFYLGAT-SAAAAGDAV--NGAQILSAYSQHLFGSL-----GSFLLGLIITLACLTTA 285 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHhhhcccC--CcHHHHHHHHHHHcchh-----HHHHHHHHHHHHHHHHH
Confidence 9999999998 777888899999998877 433332211 12244444555555554 78899999999999999
Q ss_pred hhhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 316 MSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIF 395 (482)
Q Consensus 316 ~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 395 (482)
+....+ +.++|+|.++| +|+++.++...+...++. . ..++.+.++..-...+.|=..+.
T Consensus 286 iGli~~---------------~a~~f~~~~~k-~~y~~~v~~~~l~s~~ia-~----~Gl~~Ii~~~~PvL~~~YP~~i~ 344 (378)
T TIGR00796 286 VGLTTA---------------CSEYFHKLVPK-LSYKTWVIVFTLFSFIVA-N----LGLTQIISISIPVLMIIYPLAIV 344 (378)
T ss_pred HHHHHH---------------HHHHHHHhcCC-CCHHHHHHHHHHHHHHHH-H----hCHHHHHHHHHHHHHHHHHHHHH
Confidence 998887 23777777665 899998888877776555 2 23566666665555555555444
Q ss_pred HHHH--hcccc-CCCCCcccc
Q 011598 396 FRVT--LARKS-FIPGPFNLG 413 (482)
Q Consensus 396 ~~~~--~r~~~-~~~~~~~~~ 413 (482)
..+. .||+. +.+|+||.+
T Consensus 345 lill~ll~~~~~~~~~~y~~~ 365 (378)
T TIGR00796 345 LILLSFLRKLWDSKRAVYQIT 365 (378)
T ss_pred HHHHHHHHHhcCCCCCeeehH
Confidence 4433 34433 457888875
No 43
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.8e-17 Score=162.46 Aligned_cols=395 Identities=16% Similarity=0.134 Sum_probs=279.4
Q ss_pred HHHhhhhHH-HHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CChhhhHHHhhcCCCCCcchhHHHHH
Q 011598 10 SIISVLTGI-TTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPT-SGGLYYWSAKLAGPKWAPFASWMTGW 87 (482)
Q Consensus 10 ~~~~~~~gi-~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~-~Gg~y~~~~~~~~~~~g~~~g~~~~~ 87 (482)
|..++++-+ |...++...++|....++-..++..+.+.++++..-++++-.. +||.|..++|. +|+..|-..|.
T Consensus 40 cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~s----lg~efggsigi 115 (643)
T KOG2083|consen 40 CMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRS----LGPEFGGSIGI 115 (643)
T ss_pred hhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEec----ccccccchhHH
Confidence 344445444 8888999999998767777777888899999998888887654 79999999999 66666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 011598 88 FNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVG 167 (482)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (482)
.+.++..+..+++...+++.+..++.. + +.+...-++.+..++...+|..|.|+..|.|.++.++..+.
T Consensus 116 Iy~f~~aVa~am~~vgfaEsv~~l~~~---------~--s~~~i~gi~~vt~~ill~i~~ag~~w~~k~q~~ll~il~ia 184 (643)
T KOG2083|consen 116 IYAFANAVATAMYVVGFAESVAHLFET---------E--SKEMIDGIGSVTVLILLAINVAGVEWEAKLQIVLLLILLIA 184 (643)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHh---------c--cHHHhcchhHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Confidence 788888888999999999999998865 1 22233347888889999999999999999999999988888
Q ss_pred HHHHHHHhhhcccccccc--cccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHH
Q 011598 168 VMVLMILIPSVSTERASA--KFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISA 245 (482)
Q Consensus 168 ~l~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~ 245 (482)
+.-+.+..++.....+.. .+.-..+.+.-+..+.+ ...+...+...+-+.+|.-+..+++++.|+|++++|++...+
T Consensus 185 i~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~-~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~A 263 (643)
T KOG2083|consen 185 IADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDP-GYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALLA 263 (643)
T ss_pred HHHhhhhhccChhhhcccccccchhhcccCCCCCcCC-CCceEeeeeeecchhhhhhccccccCCCCCchhhcccchhhh
Confidence 888777766543311111 01001111100111222 134665666666788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCccccccCCCC----CCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhh
Q 011598 246 IGISIIFGWGYILGITFAVTSIPNLLSEDND----AGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTS 321 (482)
Q Consensus 246 ~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (482)
.......|+.......... ..+ ..+...+ .++.-..+- .+.+...-. ..-....+...+.+++..+.+..
T Consensus 264 i~vst~~yl~~i~~~Ga~~-~r~-~~~~~~~~~~~~c~~gl~~~-~qv~smvS~---~~Pl~~AGi~~a~LSsalsslVs 337 (643)
T KOG2083|consen 264 IGVSTLLYLIFIADLGATP-VRD-ALENWNDTSTKSCPIGLTNY-LQVMSMVST---FGPLITAGILAAELSSALSSLVS 337 (643)
T ss_pred hhhhhhhhhhhhhhcccHH-HHH-HhccchhhccCCCccchHHH-HHHHHhHhh---cccchhhHHHHHHHHHHHHHHHh
Confidence 9999999988766655433 111 1111110 111122111 122221111 23366778888999999999999
Q ss_pred hhhhhhhhccCCCCCccccceecCCC-CchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011598 322 NSRMAYAFSRDGAMPFSSFWHEVNSQ-DIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTL 400 (482)
Q Consensus 322 ~sR~l~a~a~dg~lP~~~~f~~~~~~-~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 400 (482)
+.++++++.+|+..|...+|.|-.++ +.|.++..++..++..++. ....+.+..+.+......|.+....++.-
T Consensus 338 ap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~-----igeln~iapiis~FfL~syAlinf~~f~a 412 (643)
T KOG2083|consen 338 APKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIA-----IGELNIIAPIISNFFLLSYALINFSCFHA 412 (643)
T ss_pred hhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEE-----ecccceeccchhhhhhhhhhccchhhhhh
Confidence 99999999999999987788988888 9999999999888887666 23467777888889999999998888865
Q ss_pred ccccCC--CCCccccchhhHHHHHHHHHHHHHHHH
Q 011598 401 ARKSFI--PGPFNLGRYGIVVGWIAVLWVATISVL 433 (482)
Q Consensus 401 r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (482)
+-...+ +++++. .-++++..+.+.++..++.
T Consensus 413 Sl~~s~~wRp~f~~--yn~wVSllGalKOG~ImFl 445 (643)
T KOG2083|consen 413 SLAISEGWRPSFKF--YNAWVSLLGALLCLAIMFL 445 (643)
T ss_pred hhccccccCchhhh--HHHHHHHHHHHHHHHHHHH
Confidence 543311 222333 3456666666666665554
No 44
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.76 E-value=9.9e-15 Score=144.61 Aligned_cols=371 Identities=12% Similarity=0.062 Sum_probs=250.4
Q ss_pred HHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHH
Q 011598 10 SIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFN 89 (482)
Q Consensus 10 ~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~ 89 (482)
.++++.+|+...|-.... +|.....+..+++..++...++.++|.+.+.|+..+.-..++|. +|+..+++.+..+
T Consensus 13 ~GTaIGAGmLaLP~~~~~-~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~----lG~~g~~~~~~~~ 87 (394)
T PF03222_consen 13 AGTAIGAGMLALPIATAG-AGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKY----LGKKGGIVIGISY 87 (394)
T ss_pred HHccHhHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH----hChHHHHHHHHHH
Confidence 456678999999877655 56555777788888999999999999999999989999999999 8888999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 011598 90 IVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVM 169 (482)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l 169 (482)
++........+....++.+.+++.... ..+.+......++.+++..+-+.|.|...|+++++...+++.++
T Consensus 88 ~~~~y~ll~AYisg~g~~~~~~l~~~~---------~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~ 158 (394)
T PF03222_consen 88 LFLLYALLVAYISGGGSILSSLLGNQL---------GTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFI 158 (394)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhc---------CCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 888777788888888899988886521 11223344455566677778889999999999999999999888
Q ss_pred HHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHHHHHH
Q 011598 170 VLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGIS 249 (482)
Q Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~ 249 (482)
.+.+.++.+.+.++. .+..+ ...+....+..+...+++|.-......+.+..++-+|+++|++..+..+.
T Consensus 159 ~l~~~~~p~~~~~~L-----~~~~~-----~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~ 228 (394)
T PF03222_consen 159 ILVVYLIPHWNPSNL-----LDAPP-----SPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIP 228 (394)
T ss_pred HHHHHHhhhcCHHHh-----hcccc-----ccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 888777644331111 11000 11223447889999999999999999999999877899999999999999
Q ss_pred HHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011598 250 IIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAF 329 (482)
Q Consensus 250 ~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 329 (482)
.++|++...+..+.+ +.++..+..+. +.+. +......++..+.++......+...++..++......+..+.+.+.
T Consensus 229 lv~yl~w~~~~lg~l-~~~~~~~~~~~--~~~~-~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~ 304 (394)
T PF03222_consen 229 LVMYLLWVFSILGSL-PREQFAEAIAQ--GGNV-SALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADL 304 (394)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHhc--CCCh-HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888 44443211110 0112 2223444444555667777777777777777777777766665442
Q ss_pred ccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccCCCC
Q 011598 330 SRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIG-LYIAYALPIFFRVTLARKSFIPG 408 (482)
Q Consensus 330 a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~ 408 (482)
. |. +.++++. .....++.....++.+ ..+ +.|....+.+..+ ..+...++....++.|+++ +++
T Consensus 305 ----~----k~--~~~~~~r-~~~~~ltf~ppl~~a~--~~p-~~F~~al~~aG~~~~il~~ilP~~m~~~~r~~~-~~~ 369 (394)
T PF03222_consen 305 ----F----KL--KNNSSGR-LKTWLLTFLPPLIFAL--LFP-NGFLIALGYAGIGIAILLGILPALMVWKARKRK-PKQ 369 (394)
T ss_pred ----H----cC--Cccccch-HHHHHHHHHhHHHHHH--HCc-HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHccc-CCC
Confidence 1 11 1122222 2223333344344333 333 3455555555433 3444455666667666554 345
Q ss_pred CccccchhhHHHHHHH
Q 011598 409 PFNLGRYGIVVGWIAV 424 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~ 424 (482)
+||.+ .+.....+..
T Consensus 370 ~~~~~-gg~~~l~~~~ 384 (394)
T PF03222_consen 370 PYRVP-GGNFTLLLVI 384 (394)
T ss_pred CeEEe-CcHHHHHHHH
Confidence 58887 4444433333
No 45
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.71 E-value=4.7e-14 Score=139.49 Aligned_cols=357 Identities=8% Similarity=0.025 Sum_probs=229.1
Q ss_pred hhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHH----hhhhcCC-CChhhhHHHhhcCCCCC
Q 011598 4 NFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAE----ICSSYPT-SGGLYYWSAKLAGPKWA 78 (482)
Q Consensus 4 ~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ae----l~~~~p~-~Gg~y~~~~~~~~~~~g 78 (482)
.|.+...++...+|++..|.. +|.. .+++++++++.+.+.++.++. .....|+ +.+.+.++++. +|
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~----ag~~-G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~----fG 77 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQ----AGLG-GLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEH----FG 77 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHhC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH----cC
Confidence 367788888999999999986 3442 566677777666666555544 4444454 67899999999 88
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 011598 79 PFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQ 158 (482)
Q Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~ 158 (482)
+..|.+.++.|++........+.....+.+.+++.... ..+..+....+++++++...++..|.|...|++.
T Consensus 78 k~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~--------~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~ 149 (397)
T TIGR00814 78 KNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQL--------GTAPPLRGLLSLALILILVAIMSFGEKLLFKIMG 149 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 88999999999998877777777777777777765411 1111134456777777778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhh----hhcccc
Q 011598 159 LAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMT----EETKNA 234 (482)
Q Consensus 159 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~----~E~k~P 234 (482)
++...+++.++.+.+......+ .++..+ .....+.....+.++...+|+|.|+|..+.++ +|-|||
T Consensus 150 il~~~~ii~l~~l~~~lip~~~--------~~~L~~--~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~ 219 (397)
T TIGR00814 150 PLVFPLVLILVLLSLYLIPHWN--------GANLTT--FPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDK 219 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--------HHHHhc--CCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCc
Confidence 9999998887777776653322 111111 00011112458999999999999999999998 666655
Q ss_pred ---ccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHH
Q 011598 235 ---DRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAI 311 (482)
Q Consensus 235 ---~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 311 (482)
+|+..|++..+..+..++|+...++..... ++++..+... +.. +. ...+.+....+....+..+...++.
T Consensus 220 ~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l-~~~~~~~a~~----~ni-s~-Ls~l~~~~~~~~i~~~~~~f~~~Ai 292 (397)
T TIGR00814 220 EFAERKCLRIMKGASLILVATVMFFVFSCVLSL-SPAEAVAAKE----QNI-SI-LSYLANHFNAAWISYAGPIVAIVAI 292 (397)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHH----cCc-HH-HHHHHhhcCCcHHHHHHHHHHHHHH
Confidence 578889999999999999999999999988 5555432211 011 22 2344444455556666666666677
Q ss_pred HHHhhhhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH-HHHHHHHH
Q 011598 312 FFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIA-TIGLYIAY 390 (482)
Q Consensus 312 ~~~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 390 (482)
..+......+....+..+-++..-+ + =.|.|+|..-.....+..+.+..... .. .+.++.+-++. -...++.+
T Consensus 293 ~tSFlG~~lg~~e~l~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~w~~~~--~n-~~il~~i~~~~gp~~a~i~~ 366 (397)
T TIGR00814 293 SKSFFGHYLGAREGLNGIVLNSLKM--K-GKKINIRKLNRAIAIFIVLTTWIVAY--IN-PSILSFIEALGGPIIAMILF 366 (397)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcc--c-ccccCHHHHHHHHHHHHHHHHHHHHH--hC-ccHHHHHHHhhHHHHHHHHH
Confidence 7777777777666666655322111 0 01223222111111222222211222 22 23344443343 36667777
Q ss_pred HHHHHHHHHh
Q 011598 391 ALPIFFRVTL 400 (482)
Q Consensus 391 ~~~~~~~~~~ 400 (482)
++++.+..|.
T Consensus 367 ~~p~~~~~~v 376 (397)
T TIGR00814 367 LMPMYAIYKV 376 (397)
T ss_pred HHHHHHHHcc
Confidence 7877776654
No 46
>PRK10483 tryptophan permease; Provisional
Probab=99.69 E-value=2.3e-13 Score=133.59 Aligned_cols=371 Identities=9% Similarity=-0.026 Sum_probs=238.6
Q ss_pred HHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHH
Q 011598 9 FSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWF 88 (482)
Q Consensus 9 ~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~ 88 (482)
+.++++.+|+++.|-.... .|-..+....+++...|...++...|...++|+.-+.-..+++. +|+.+..+.+.+
T Consensus 20 IaGT~IGaGMLaLP~~~a~-~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~----LG~~g~~i~~~s 94 (414)
T PRK10483 20 IGGTIIGAGMFSLPVVMSG-AWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDL----LGKGWNVVNGIS 94 (414)
T ss_pred HHHchHhHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH----cChHHHHHHHHH
Confidence 3456678889988766655 55555777788899999999999999999999988999999999 777777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 011598 89 NIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGV 168 (482)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 168 (482)
+.+-.......+....++.+.+.++.. +... +...-++++.+++..+-+.|.|...|+|+++...|++..
T Consensus 95 ~lfl~Y~Ll~AYisg~g~il~~~l~~~-------~~~i---~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f 164 (414)
T PRK10483 95 IAFVLYILTYAYISASGSILHHTFAEM-------SLNV---PARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVITF 164 (414)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHhc-------CCCC---cHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 665555666667777778888776430 1222 233456677788888999999999999999999998888
Q ss_pred HHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHHHHH
Q 011598 169 MVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGI 248 (482)
Q Consensus 169 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~ 248 (482)
+..+...+.+...+. ..+... .+ . ......+.++...+++|.=...++.+.++.++-+|+++|+++.+..+
T Consensus 165 ~~~~~~l~~~i~~~~-----L~~~~~--~~-~-~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~I 235 (414)
T PRK10483 165 FLTFGSLLGHVQPAT-----LFNVAE--SN-A-SYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLM 235 (414)
T ss_pred HHHHHHHHhhcCHHH-----Hhcccc--cc-c-hhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHH
Confidence 766655443222111 011100 00 0 00123678888899999888889999888876557999999999999
Q ss_pred HHHHHHHHHHHHHhccCCccccccC--CCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011598 249 SIIFGWGYILGITFAVTSIPNLLSE--DNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMA 326 (482)
Q Consensus 249 ~~~~y~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 326 (482)
..++|++...+..+.+ +.++..+. .+ ... +...+.+++..+.+....+..+...++..++......+....+
T Consensus 236 plv~yl~W~~~~lg~l-~~~~~~~~~~~~----~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l 309 (414)
T PRK10483 236 ALALYTIWLLATMGNI-PRPEFIGIAEKG----GNI-DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYL 309 (414)
T ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHcC----CCh-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 44443211 11 122 3333455554455555556666666666666555555555554
Q ss_pred hhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 011598 327 YAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFI 406 (482)
Q Consensus 327 ~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 406 (482)
.+.-+.+ +. +++.. ...+++.+-..++.+ ..++.....+--.+.......-.++....++.|||.+
T Consensus 310 ~D~~k~~-----~~-----~~~r~-~~~~ltflPPl~~al--~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk~~~- 375 (414)
T PRK10483 310 ADLFGFD-----DS-----AMGRF-KTALLTFLPPVVGGL--LFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFG- 375 (414)
T ss_pred HHHhCCC-----Cc-----cccce-eeehhhHhhHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 4432211 11 11111 123345555555444 3444444444333444455555667777777776533
Q ss_pred CCCccccchhhHHHHHHH
Q 011598 407 PGPFNLGRYGIVVGWIAV 424 (482)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~ 424 (482)
+++||.| ++.....+..
T Consensus 376 ~~~y~v~-Gg~~~l~~~~ 392 (414)
T PRK10483 376 SPKFRVW-GGKPMIVLIL 392 (414)
T ss_pred CCCceec-CCHHHHHHHH
Confidence 4678988 4444333333
No 47
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.68 E-value=4.5e-13 Score=132.18 Aligned_cols=375 Identities=10% Similarity=0.043 Sum_probs=245.5
Q ss_pred HHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHH
Q 011598 7 FSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTG 86 (482)
Q Consensus 7 ~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~ 86 (482)
+.+.++++.+|+...|-.... +|.....+..+++..++...++.++|.....|+.-+....+++. +|+..+++.+
T Consensus 10 ~li~GTaIGAGmLaLPi~~~~-~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~----LG~~g~~i~~ 84 (403)
T PRK15132 10 FIVAGTTIGAGMLAMPLAAAG-VGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRY----LGRYGQWLTG 84 (403)
T ss_pred HHHHhcchhHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH----hChHHHHHHH
Confidence 345667788999998776665 66655677778888889999999999988888777899999999 8888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 011598 87 WFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLV 166 (482)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 166 (482)
..+++........+....++.+.+.+..+.+ .+.++ ....+.+.++...+-+.|.|...|+++++...+++
T Consensus 85 ~~y~fl~y~ll~AYisg~g~il~~~l~~~~~------~~i~~---~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii 155 (403)
T PRK15132 85 FSMMFLMYALTAAYISGAGELLASSISDWTG------ISMSP---TAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKII 155 (403)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHhcc------CCCCh---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9998877777777788877777777654211 11122 23344455556668888999999999999999988
Q ss_pred HHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHHH
Q 011598 167 GVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAI 246 (482)
Q Consensus 167 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~ 246 (482)
..+........+.+ .++..+ . +++.+ ..+.++...+++|.=...++.+....++-+|+++|++..+.
T Consensus 156 ~~~~~~~~l~p~~~--------~~~L~~--~-~~~~~--~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs 222 (403)
T PRK15132 156 FLVVMLALMMPHIH--------KVNLLT--L-PLQQG--LALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGS 222 (403)
T ss_pred HHHHHHHHHHHhcC--------HHHHhc--C-Ccccc--HHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHH
Confidence 87665555443221 111211 0 01111 27888899999999888999999998887899999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011598 247 GISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMA 326 (482)
Q Consensus 247 ~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 326 (482)
++..++|++...+..+.. +.++..+...+ + ... +...+.+++..+.++...+..+...++..++......+..+.+
T Consensus 223 ~i~li~yl~W~~~~lg~l-~~~~~~~~~~~-~-~~~-~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l 298 (403)
T PRK15132 223 AIPLVAYIFWQLATLGSI-DSTTFMGLLAN-H-AGL-NGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYL 298 (403)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHc-c-Cch-HHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 44443211000 0 111 1122344444455566667777777777777776666666666
Q ss_pred hhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccccC
Q 011598 327 YAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIA-TIGLYIAYALPIFFRVTLARKSF 405 (482)
Q Consensus 327 ~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~r~~~~ 405 (482)
.+.-+.+ + ++++ -.....++.+...++.. ..+ +.|....+.+ .....+...++....++.|+++
T Consensus 299 ~d~~~~~-----~-----~~~~-r~~~~~l~flppli~a~--~~P-~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~~- 363 (403)
T PRK15132 299 ADLFQRR-----N-----TVGG-RLQTGLITFLPPLAFAL--FYP-RGFVMALGYAGVALAVLALLLPSLLVWQSRKQN- 363 (403)
T ss_pred HHHHccC-----c-----cccC-CchhehhhHHHHHHHHH--HhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-
Confidence 6543221 0 1111 11223344444444444 233 3344444443 4556666777888888877653
Q ss_pred CCCCccccchhhHHHHHHHHHHH
Q 011598 406 IPGPFNLGRYGIVVGWIAVLWVA 428 (482)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~ 428 (482)
++++||.| .++...++..+..+
T Consensus 364 ~~~~y~v~-gg~~~~~~v~~~G~ 385 (403)
T PRK15132 364 PQAGYRVK-GGRPALALVFLCGI 385 (403)
T ss_pred CCCCccCC-CChHHHHHHHHHHH
Confidence 24688987 55554444443333
No 48
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.64 E-value=1.9e-12 Score=127.03 Aligned_cols=383 Identities=10% Similarity=-0.004 Sum_probs=236.2
Q ss_pred HHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHH
Q 011598 9 FSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWF 88 (482)
Q Consensus 9 ~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~ 88 (482)
+.++.+.+|+++.|-.... +|-..+.+..++..+.|...++.+.|...++|+.-+.-..++|. +|+....+.+..
T Consensus 18 IaGT~IGAGMLaLP~~~a~-~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~----LG~~g~~i~~~~ 92 (415)
T PRK09664 18 IAGTVIGGGMFALPVDLAG-AWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDL----IGNTWNIISGIT 92 (415)
T ss_pred hhhccHhHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH----cChHHHHHHHHH
Confidence 3456678889988766655 55555777888899999999999999999999988999999999 777677777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 011598 89 NIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGV 168 (482)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 168 (482)
+.+-.......+....++.+.+.++.+. +...+ ....++++.+++..+-+.|.|...|+++++...|++..
T Consensus 93 ~~fl~Y~Ll~AYisggG~il~~~l~~~~------~~~i~---~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f 163 (415)
T PRK09664 93 VAFVLYILTYAYISANGAIISETISMNL------GYHAN---PRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISF 163 (415)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhhhc------cCCCc---HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 6555555566677777788887764311 12222 23345677888899999999999999999999988887
Q ss_pred HHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHHHHH
Q 011598 169 MVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGI 248 (482)
Q Consensus 169 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~ 248 (482)
+..+..+..+...+ . ..+... ..+-.......+.+++..+++|.=...++.+....++-.|+++|+++.+..+
T Consensus 164 ~~~~~~l~~~i~~~---~--L~~~~~--~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~I 236 (415)
T PRK09664 164 VIVFGSFFFQVDYS---I--LRDATS--TTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLL 236 (415)
T ss_pred HHHHHHHhhcccHH---H--HhcCcc--ccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHH
Confidence 76666554333211 1 111000 0000000123667888888888878888888888877678999999999999
Q ss_pred HHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011598 249 SIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYA 328 (482)
Q Consensus 249 ~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 328 (482)
..++|++...+....+ +.++..+... .+....+......++ ...++...+..+...++..++...... -+++
T Consensus 237 pLviY~~W~~~ilG~l-p~~~~~~~~~--~g~nv~~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~L----GL~D 308 (415)
T PRK09664 237 ALVIYLFWLYCTMGNI-PRESFKAIIS--SGGNVDSLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTL----GLFD 308 (415)
T ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHH--cCCCchHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 9999999999999988 4444321110 001222222222222 233334445555544554444444444 4444
Q ss_pred hccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 011598 329 FSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPG 408 (482)
Q Consensus 329 ~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 408 (482)
.-+|..=- .+.++++.. ...++.+...++.+ ..++.....+.-.+.......-.++....++.|||. .++
T Consensus 309 ~l~D~~~~-----~~~~~~r~~--~~~ltflPPl~~al--~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk~~-~~~ 378 (415)
T PRK09664 309 YLADLFKI-----DNSHGGRFK--TVLLTFLPPALLYL--IFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKF-PNQ 378 (415)
T ss_pred HHHHHhCC-----CCcccccee--eehhhHhhhHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCC
Confidence 43443211 111111222 23345555555554 334344444433344455555566777777777553 347
Q ss_pred CccccchhhHHHHHHHHHHHHHH
Q 011598 409 PFNLGRYGIVVGWIAVLWVATIS 431 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~ 431 (482)
+||.| .++..-.+..++.+..+
T Consensus 379 ~y~v~-GG~~~l~~~~~~g~~ii 400 (415)
T PRK09664 379 MFTVW-GGNLIPAIVILFGITVI 400 (415)
T ss_pred Cceee-CCHHHHHHHHHHHHHHH
Confidence 89998 55555444444444333
No 49
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.49 E-value=9.8e-11 Score=117.05 Aligned_cols=238 Identities=9% Similarity=0.009 Sum_probs=186.2
Q ss_pred HHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-hhhhHHHhhcCCCCCcchhHH
Q 011598 6 AFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSG-GLYYWSAKLAGPKWAPFASWM 84 (482)
Q Consensus 6 ~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~G-g~y~~~~~~~~~~~g~~~g~~ 84 (482)
.+....+.+.+|+...|- ..+.+|-...+...++++.++....+.+.|.....|+.. +.+.-+++. +||.++++
T Consensus 15 vl~l~gT~IGAGvL~lP~-a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~----~G~~~~~l 89 (415)
T COG0814 15 VLILAGTAIGAGVLFLPV-AFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY----LGKKGGIL 89 (415)
T ss_pred HHHHHccccccchhhhhH-HhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH----hCcchHHH
Confidence 455667778888888854 444467655677788899999999999999999999984 999999999 88889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 011598 85 TGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWN 164 (482)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 164 (482)
....+.+........+....++.+...+... +..++.......+++..++..+.+.|.+..-|.++.+...+
T Consensus 90 i~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~--------~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~ 161 (415)
T COG0814 90 IGLSYFFALYGLLVAYIVGIGNLLASFLGNQ--------FGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK 161 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHhh--------cccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 9999998877778888888888888877541 11111345555666777777799999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccc-cchHHH
Q 011598 165 LVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRN-GPKGII 243 (482)
Q Consensus 165 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~-ip~ai~ 243 (482)
++.++++......+-+... ...... .+ +.....++.++...+|+|.+......+..|+|+++|+ ++|++.
T Consensus 162 v~~~~~l~~~~~~~~~~~~-----l~~~~~---~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~ 232 (415)
T COG0814 162 VIYLVLLVVYLIPHWNPAN-----LFALPS---AS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAIL 232 (415)
T ss_pred HHHHHHHHHHHhcccCHHH-----Hhcccc---cc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHH
Confidence 9888887777654332110 111100 00 1223458899999999999999999999999988777 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccC
Q 011598 244 SAIGISIIFGWGYILGITFAVT 265 (482)
Q Consensus 244 ~~~~~~~~~y~l~~~~~~~~~~ 265 (482)
.+.....++|+...+....+.+
T Consensus 233 ~~~~~~~vlyi~~~~~~~~~~~ 254 (415)
T COG0814 233 IGSLIALVLYILVGFFVFGCFG 254 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999886
No 50
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.45 E-value=1.1e-09 Score=107.75 Aligned_cols=372 Identities=10% Similarity=0.048 Sum_probs=237.0
Q ss_pred hhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCChhhhHHHhhcCCCCCcchh
Q 011598 4 NFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSY-PTSGGLYYWSAKLAGPKWAPFAS 82 (482)
Q Consensus 4 ~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~-p~~Gg~y~~~~~~~~~~~g~~~g 82 (482)
.|.++..++++.+|+...|-..-. +|....++..+++..++...++.+.|..... |+..+.-.-+++. +|+..+
T Consensus 23 ~W~l~l~GTAIGAGmLfLPI~~g~-~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~----lG~~g~ 97 (443)
T PRK13629 23 TWTLGLFGTAIGAGVLFFPIRAGF-GGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEH----FGKTGG 97 (443)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHH----cChhHH
Confidence 367888999999999999766654 6666567778888889999999999999998 5556788999999 888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 011598 83 WMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAA 162 (482)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 162 (482)
.+.+..|++........+.....+.+.+.+.. + ...+..+..+.+++++.++..+-..|.|..-|+++++..
T Consensus 98 ~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~----q----l~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~ 169 (443)
T PRK13629 98 VVITFLYFFAICPLLWIYGVTITNTFMTFWEN----Q----LGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVW 169 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h----cCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999998886666666666665666554322 0 111112456778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhh----c------c
Q 011598 163 WNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEE----T------K 232 (482)
Q Consensus 163 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E----~------k 232 (482)
.+++.++.+.+....+-+...-.+...+.. + ..+-.......+.+++..+++|.=...++.++.. . +
T Consensus 170 ~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~-~--~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~ 246 (443)
T PRK13629 170 PFIASLVLISLSLIPYWNSAVIDQVDLGSL-S--LTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRD 246 (443)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHhcCccccc-c--ccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccc
Confidence 999998888887765433211111000000 0 0000000123777888888888766666666555 3 2
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCC-----CchhHHHHHHH
Q 011598 233 NADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGS-----GVGGIVCLGVV 307 (482)
Q Consensus 233 ~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~ 307 (482)
+.+|+..|++..+.++..++|++..++..+.. ++++..+... .+ .+..+.+.+.+++.... ++...+..+..
T Consensus 247 ~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsL-s~~~l~~a~~-qn-~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa 323 (443)
T PRK13629 247 FTERKCSQIISRASMLMVAVVMFFAFSCLFTL-SPQNMAEAKA-QN-IPVLSYLANHFASMTGTKSTFAITLEYAASIIA 323 (443)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHH-hC-CcHHHHHHHHhhhcccccccchhHHHHHHHHHH
Confidence 23588899999999999999999999999999 5555432211 00 34335555666553333 44566666666
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhccC-CCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH-HHHH
Q 011598 308 AVAIFFCGMSSVTSNSRMAYAFSRD-GAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSI-ATIG 385 (482)
Q Consensus 308 ~~~~~~~~~~~~~~~sR~l~a~a~d-g~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~-~~~~ 385 (482)
.++...+......+..-.+..+.++ ..-+ + =.|.|+|..-....++..+.+.+... .. .+.++.+-.+ +-+.
T Consensus 324 ~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~w~~~~--~n-p~il~~i~~~~gPii 397 (443)
T PRK13629 324 LVAIFKSFFGHYLGTLEGLNGLILKFGYKG--D-KTKVSLGKLNTISMIFIMGSTWVVAY--AN-PNILDLIEAMGAPII 397 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-ccccCHHHHHHHHHHHHHHHHHHHHH--hC-ccHHHHHHHhhhHHH
Confidence 6666666666666666666666543 1111 1 01333332222233333222222222 22 2334444334 3466
Q ss_pred HHHHHHHHHHHHHHh
Q 011598 386 LYIAYALPIFFRVTL 400 (482)
Q Consensus 386 ~~~~~~~~~~~~~~~ 400 (482)
.++.|++++.+..|.
T Consensus 398 a~il~l~P~y~i~kv 412 (443)
T PRK13629 398 ASLLCLLPMYAIRKA 412 (443)
T ss_pred HHHHHHHHHHHHHcc
Confidence 677777777776643
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.20 E-value=1.8e-08 Score=98.06 Aligned_cols=271 Identities=15% Similarity=0.100 Sum_probs=195.4
Q ss_pred hhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHHHHHH
Q 011598 14 VLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQ 93 (482)
Q Consensus 14 ~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~~ 93 (482)
..+++...|+...+.+| .++++.+++++..+...+.+..+.+++|+. ....+.++. +||..|...+..+.+.+
T Consensus 16 ~g~~~l~~p~~l~~~~~--d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~l~~~~~~~----~Gk~lg~ii~~~~~l~~ 88 (320)
T PF03845_consen 16 IGTGILFLPAILAEQAG--DAWISVLLGGLIGLLLALLIYYLLKRFPGK-TLVEISEKL----FGKWLGKIINLLYILYF 88 (320)
T ss_pred HHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHH----hCcHHHHHHHHHHHHHH
Confidence 45778888888888775 378899999999999999999999999975 688999999 88888998888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 011598 94 WAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMI 173 (482)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i 173 (482)
....+...-..++.+.... .+..+...+...+++........|.+..+|.+.+.....+...+.+..
T Consensus 89 l~~~~~~lr~~~~~i~~~~-------------lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~ 155 (320)
T PF03845_consen 89 LLISALVLREFSEFIKTYL-------------LPETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLILL 155 (320)
T ss_pred HHHHHHHHHHHHHHHHHHh-------------cCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766643 233456667777888889999999999999777776666555554443
Q ss_pred HhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHHHHHHHHHH
Q 011598 174 LIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGISIIFG 253 (482)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y 253 (482)
... .+.+.. ...+.. +.+......+.....+.|.|.|....+...+||| |+..|....+...+.+++
T Consensus 156 ~~~---~~~~~~--~l~P~~-------~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~-~~~~k~~~~~~~~~~~~~ 222 (320)
T PF03845_consen 156 LSI---PNIDWD--NLLPVL-------ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK-KKLKKSLLIAILISGLFL 222 (320)
T ss_pred Hhc---ccCCHH--HeeCcc-------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHH
Confidence 322 111111 122222 2223448888888889999999999999999996 556899999999999999
Q ss_pred HHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHH-hc---CCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011598 254 WGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLA-FK---NRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYA 328 (482)
Q Consensus 254 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 328 (482)
.+..+....+. +++...+.. .|..+..... ++ +. ...++...-..+.+......+++.++.+..
T Consensus 223 ~~~~~~~i~vf-G~~~~~~~~-----~P~~~~~~~i~i~~fieR-----ld~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 223 LFIIFITIGVF-GPELAKKLT-----YPVLELARSIEIGDFIER-----LDSIFILIWIIGIFIKISLYLYAASEGLSQ 290 (320)
T ss_pred HHHHHHHHHhc-CHHHHhcee-----cHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888 454443332 4443332211 11 11 344666666677777777778888877654
No 52
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.76 E-value=1.2e-05 Score=80.39 Aligned_cols=230 Identities=12% Similarity=0.099 Sum_probs=145.7
Q ss_pred hhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCh-----hhhHHHhhcCCCCCcchhHHHHHHH
Q 011598 15 LTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGG-----LYYWSAKLAGPKWAPFASWMTGWFN 89 (482)
Q Consensus 15 ~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg-----~y~~~~~~~~~~~g~~~g~~~~~~~ 89 (482)
..|+.+.| .++++.|-.+-+...++.+++...++....+.=...+...| ...-.+++ ||+..-..+++..
T Consensus 53 G~gvLsLP-~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~a----fG~~~~~iv~~~~ 127 (437)
T KOG1303|consen 53 GAGVLSLP-YALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAA----FGPKGRLLVSVLQ 127 (437)
T ss_pred hhhhhhhH-HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHH----hCCCceEeeeHHH
Confidence 45555554 77777777543666777777777787778888888877777 77888889 6665655666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 011598 90 IVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVM 169 (482)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l 169 (482)
.+.-......+....++-+..+++......+ .........+.+.+.+.... +...+..+.+.....+..+....
T Consensus 128 ~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~---~l~~~~f~iif~~i~~~~s~---lp~~~~l~~~S~~~avmS~~~a~ 201 (437)
T KOG1303|consen 128 YLELFGICVVYIILAGDNLKALFPIVSLNDN---SLDKQYFIIIFGLIVLPLSQ---LPNFHSLSYLSLVGAVMSTLYAV 201 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---cccceehhhhHHHHHHHHHH---CCCcchhHHHHHHHHHHHHHHHH
Confidence 6665556666777777888887765221110 11122233334444433333 44444444455555555544444
Q ss_pred HHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHHHHHH
Q 011598 170 VLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGIS 249 (482)
Q Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~ 249 (482)
.....+.....+.........+.. ..+ . ...++....|+|.|-....++..++|+|+| ++|+.+.+..++
T Consensus 202 ~~~~~g~~~g~~~~~~~~~~~~~~------~~~--~-~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis~~~~ 271 (437)
T KOG1303|consen 202 ILIVLGIADGVGFCAPSGGYLDLG------TIP--T-VFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLISYIIV 271 (437)
T ss_pred HHHHHhhccccccCCcccCcccCC------CCc--c-hhhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHHHHHH
Confidence 444444443322211111111111 111 0 167788889999999999999999999988 999999999999
Q ss_pred HHHHHHHHHHHHhccC
Q 011598 250 IIFGWGYILGITFAVT 265 (482)
Q Consensus 250 ~~~y~l~~~~~~~~~~ 265 (482)
+.+|+.++..-..+.+
T Consensus 272 ~~~y~~vai~GY~aFG 287 (437)
T KOG1303|consen 272 TFLYFPVAIIGYWAFG 287 (437)
T ss_pred HHHHHHHHHhhhhhhc
Confidence 9999999988877764
No 53
>PTZ00206 amino acid transporter; Provisional
Probab=98.67 E-value=5.3e-05 Score=77.53 Aligned_cols=249 Identities=12% Similarity=0.049 Sum_probs=140.1
Q ss_pred HHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHH
Q 011598 6 AFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMT 85 (482)
Q Consensus 6 ~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~ 85 (482)
++++.+....+|+.+.|. +++.+|-...++..++.+.++........+.+.+ ++.-....-++++ +|+...++.
T Consensus 66 ~fnL~~~~iGaGILsLP~-Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~----~G~~g~~~v 139 (467)
T PTZ00206 66 AFNIASSTVGAGIVGLPS-AANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVL----LGPWGSYYV 139 (467)
T ss_pred HHHHHHHHHhHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHH----hCHHHHHHH
Confidence 466777788888888754 4555776545555555566665555566666555 3444677777888 788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchh--HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 011598 86 GWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKY--VVIAFHGGILLLHAIINSLPISILSFFGQLAAAW 163 (482)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 163 (482)
.....+........+....++.+...+.. .+...+..+.. ....+...+.+..-+.-.+.++..+++..+....
T Consensus 140 ~~~~~~~~~G~cv~YlIiigd~l~~~l~~----~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~ 215 (467)
T PTZ00206 140 AATRAFHGFSACVAYVISVGDILSATLKG----TNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSF 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHH
Confidence 88887776777777777777777766532 11111110000 0001111111222333455555555554443322
Q ss_pred HHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccc-cccchHH
Q 011598 164 NLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNAD-RNGPKGI 242 (482)
Q Consensus 164 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~-k~ip~ai 242 (482)
.+...+.+++........+...+....+..+++..-|.. ......++....|+|.+.......-+|+|||. |+..+..
T Consensus 216 i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~ 294 (467)
T PTZ00206 216 MVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNS-GNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLAS 294 (467)
T ss_pred HHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecC-chHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHH
Confidence 222222211111111000000000000000000000111 13477788999999999999999999999974 7788999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC
Q 011598 243 ISAIGISIIFGWGYILGITFAVT 265 (482)
Q Consensus 243 ~~~~~~~~~~y~l~~~~~~~~~~ 265 (482)
..+..++.++|.+..+.-....+
T Consensus 295 ~~s~~i~~~lY~~~G~~GYl~fG 317 (467)
T PTZ00206 295 TIAMGMCFTMYVLTAFFGYMDFG 317 (467)
T ss_pred HHHHHHHHHHHHHHHHhhhhccc
Confidence 99999999999988877766553
No 54
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.67 E-value=4.1e-05 Score=75.53 Aligned_cols=298 Identities=14% Similarity=0.094 Sum_probs=157.1
Q ss_pred hhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcC----C---CChhhhHHHhhcCC
Q 011598 3 SNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYP----T---SGGLYYWSAKLAGP 75 (482)
Q Consensus 3 ~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p----~---~Gg~y~~~~~~~~~ 75 (482)
++++.+.+.....+ =......++..+||...+|.|+.+.+ ...+.++=.-++..+. + .||...|.+|.+++
T Consensus 23 qA~~~ala~~vG~G-NI~GVa~AI~~GGPGAiFWMWi~a~~-Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~ 100 (416)
T PF01235_consen 23 QALCTALAGTVGTG-NIAGVATAIAIGGPGAIFWMWISALL-GMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGS 100 (416)
T ss_pred HHHHHHHHhccCcc-hHHHHHHHHHhhchhHHHHHHHHHHH-HHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhcc
Confidence 45555555544333 33344566777999655666765544 3344433333444433 2 58999999999665
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHH
Q 011598 76 KWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSF 155 (482)
Q Consensus 76 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~ 155 (482)
|+ ++.+.+.+....+... ...... +.+...+.. .+.. +....++++.++..++-.-|+|..+|
T Consensus 101 k~---la~~fai~~~~~~~~~--~~~~Q~-nsi~~~~~~--------~f~i---~~~~~gi~l~~l~~~vi~GGikrI~~ 163 (416)
T PF01235_consen 101 KW---LAILFAIFLIIAFGIG--FNMVQA-NSIADALSS--------AFGI---PPWITGIILAILVALVIFGGIKRIAK 163 (416)
T ss_pred ch---HHHHHHHHHHHHHHhh--hhHHHH-HHHHHHHHh--------hccc---cHHHHHHHHHHHHHHHHHcchhHHHH
Confidence 42 3333333322222111 011111 112222211 1222 33456777788888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccc--ccceeccccCCCCCCcchhh--HH----HhhHhHhHhh---hccccc
Q 011598 156 FGQLAAAWNLVGVMVLMILIPSVSTERASAK--FVFTHFNSDNGDGINSKVYI--FV----LGLLMSQYTL---TGYDAS 224 (482)
Q Consensus 156 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~a~---~G~e~~ 224 (482)
+...+.-++.+.-++..+..+....++-++. ..+++..+++. ..++..+ +. .++.=.+|+- .|....
T Consensus 164 v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~a--a~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~ 241 (416)
T PF01235_consen 164 VSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKA--AFGGFAGSTIMMAIRQGVARGLFSNEAGLGSAPI 241 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCcc--chhhHHHHHHHHHHHHhhhhhhccCCCCCChhHH
Confidence 9999888888777777666655443332221 12222222111 1111111 11 1222234433 345556
Q ss_pred chhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHH
Q 011598 225 AHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCL 304 (482)
Q Consensus 225 ~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 304 (482)
.+-+.|+++|.|+=-.++.-..+=..++-.+..+.+...- .+....+.+ + .+....++++.+| ++...++.
T Consensus 242 a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG-~~~~~~~~~----g---~~l~~~Af~~~~g-~~g~~~v~ 312 (416)
T PF01235_consen 242 AHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTG-VWSWGSGLE----G---AALTQAAFSTVLG-SWGPYFVA 312 (416)
T ss_pred HHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccC-CCCCCCcch----H---HHHHHHHHHHhhh-hhHHHHHH
Confidence 7777789999888666655544433332222222222211 121111111 1 1333445554444 44788999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhc
Q 011598 305 GVVAVAIFFCGMSSVTSNSRMAYAFS 330 (482)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~sR~l~a~a 330 (482)
+++++-.+++..++.+..-|.+.-+-
T Consensus 313 i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 313 IALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999988887776654
No 55
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.61 E-value=7.2e-05 Score=70.01 Aligned_cols=256 Identities=11% Similarity=0.087 Sum_probs=140.9
Q ss_pred HHhHhhhccccChhh--HHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHHHHHHHHH
Q 011598 19 TTLYNTGLNFGGPIS--LVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAV 96 (482)
Q Consensus 19 ~~~~~~~~~~~G~~~--~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 96 (482)
|++-....+..|+.+ .+++.++++++....+....|+++++ ++...-.+.++. +||.++...-....+. ...
T Consensus 21 fAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f-~a~~y~~~~~~v----~~~~~~ki~d~~iif~-lf~ 94 (349)
T COG3949 21 FASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKF-NATSYREILKYV----SGPKFAKIIDIIIIFF-LFS 94 (349)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-cccchHHHHHHH----hhHHHHHHHHHHHHHH-HHH
Confidence 566666777666532 58899999999999999999999999 567788999999 7776776655443333 222
Q ss_pred HHHHHH-HHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 97 TTSVDF-SLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLP-ISILSFFGQLAAAWNLVGVMVLMIL 174 (482)
Q Consensus 97 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~l~~~i~ 174 (482)
.+.... ..+..+.+. +..|.|... ++++....++..++ ++..-+++.+.+-..++.+..+...
T Consensus 95 ~~vVM~AGags~~~e~------------~~lP~wiGa---li~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l~~v~~~ 159 (349)
T COG3949 95 TAVVMLAGAGSLLEEM------------FGLPYWIGA---LIIILLVLILLFLGRVEGIITVNGIITPFLIIILVLVTLS 159 (349)
T ss_pred HHHHHhccchhHHHHH------------hCccHHHHH---HHHHHHHHHHHHHhcccceeeeheeHHHHHHHHHHHHHHH
Confidence 222222 222233333 333433332 33444444444555 4444444433333332221111111
Q ss_pred hhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHHHHHHHHHHH
Q 011598 175 IPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGISIIFGW 254 (482)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~ 254 (482)
...... ++..+.. ... ..+|.. ...+ ..+.-..........+++|+|+ ||+..++-..+-++.++...
T Consensus 160 ~~f~~~-~~~a~~~---~~~--~~~W~~----~~~~-Y~alNi~~~~avLv~lg~~~~~-~~~~~~g~l~gglIlgvl~~ 227 (349)
T COG3949 160 FQFTNL-GNAAQIV---LTK--QGNWKA----SAVG-YGALNILVAVAVLVPLGGRMES-RKVSGIGGLIGGLILGVLLF 227 (349)
T ss_pred HHHhhc-cchhhhc---CCc--CCChHH----HHHh-hhhHHHHhHhHhhhhhcccccc-cchhhhhhhhhhHHHHHHHH
Confidence 111111 1111111 101 111221 1111 1111122445566788899999 68888999999998888888
Q ss_pred HHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhh
Q 011598 255 GYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTS 321 (482)
Q Consensus 255 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (482)
+..++..... +++.+.+ .|..++. +.++ +....++.....+..+++....+++
T Consensus 228 l~nlsLi~~~---~~v~~~d-----IP~l~i~-~~~~-----~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 228 LINLSLIALY---DKVVNYD-----IPLLTIA-KNFS-----PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred HHHHHHHhhc---chhhccC-----CcHHHHH-Hhcc-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887755 3444444 5664443 2222 2256667777777777777666555
No 56
>PLN03074 auxin influx permease; Provisional
Probab=98.59 E-value=0.00011 Score=75.12 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=46.0
Q ss_pred hHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHhcc
Q 011598 206 IFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAV 264 (482)
Q Consensus 206 ~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~ 264 (482)
.+..++...+|+|.|.-....+-.|+|||+ +.++....+...+...|+...+......
T Consensus 234 ~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~f 291 (473)
T PLN03074 234 LYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYIYLAATLYVLTLTLPSAAAVYWAF 291 (473)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHhccChh-cccchHHHHHHHHHHHHHHHHHeeeeee
Confidence 355666678999999999999999999995 5888888888888888877655544444
No 57
>PRK11375 allantoin permease; Provisional
Probab=98.54 E-value=0.00094 Score=68.55 Aligned_cols=208 Identities=10% Similarity=-0.017 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 34 LVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIIL 113 (482)
Q Consensus 34 ~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (482)
++++.+++.++........+..+.+.- =+.....|..+|++-.+..+++-++... ....+......++.+..++.
T Consensus 62 ai~ai~lG~~i~~~~~~l~g~~G~~~G--l~~~v~sR~sFG~~Gs~l~~~~rai~~~---igW~~vqt~~~g~al~~~l~ 136 (484)
T PRK11375 62 IMLAIILSAFFIAAVMVLNGAAGSKYG--VPFAMILRASYGVRGALFPGLLRGGIAA---IMWFGLQCYAGSLALLILIG 136 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccC--CChhHhHHHHHccccchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 555555555554444444444444442 2677888888444422333443333222 22233334444444444432
Q ss_pred Hh----cCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccc
Q 011598 114 LS----TGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVF 189 (482)
Q Consensus 114 ~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 189 (482)
.. ....++......+.......+++.++...+...|.|...|++.+...+..+..+.+.+..+...+ . .+.
T Consensus 137 ~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g-~--~~~-- 211 (484)
T PRK11375 137 KIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVG-I--GPI-- 211 (484)
T ss_pred HhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C--chh--
Confidence 21 10000000011112223333444566666778899999999888887776665555544433321 1 110
Q ss_pred eeccccCCCCCCcchhhHHHhhHhHhHhhh-cccccchhhhhccccccccchHHHHHHHHHHHH
Q 011598 190 THFNSDNGDGINSKVYIFVLGLLMSQYTLT-GYDASAHMTEETKNADRNGPKGIISAIGISIIF 252 (482)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~ 252 (482)
.+..+++..+.....+.+..++...+=.+. +.-..+.+++..||+ |+.-++..++..+...+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~-~~~~~~~~~g~~i~~~~ 274 (484)
T PRK11375 212 FDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSF-RAQALGQTLGLVVAYIL 274 (484)
T ss_pred hccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCCh-hhhHHHHHHHHHHHHHH
Confidence 011110011111123445554433332333 344567888888885 55556666665554443
No 58
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.43 E-value=0.00062 Score=67.35 Aligned_cols=271 Identities=13% Similarity=0.078 Sum_probs=154.7
Q ss_pred hhhhHHHHhHhhhccccChhhH-HHHHHHHHHHHH---HHHHHHHHhhhhcCCCC------------hhhhHHHhhcCCC
Q 011598 13 SVLTGITTLYNTGLNFGGPISL-VYGWLIAGAFTL---FVGSSMAEICSSYPTSG------------GLYYWSAKLAGPK 76 (482)
Q Consensus 13 ~~~~gi~~~~~~~~~~~G~~~~-~~~~ii~~l~~l---~~a~~~ael~~~~p~~G------------g~y~~~~~~~~~~ 76 (482)
...+|++.. +.++..+|-..- +...+++.+... ...-+--++.++.-++- +.+.| .|.
T Consensus 60 ~iGtG~l~l-P~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~~~~~~~-~r~---- 133 (449)
T KOG1304|consen 60 SIGTGILSL-PLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAMEGGPGW-LRK---- 133 (449)
T ss_pred hhccccccC-hHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCcHH-HHh----
Confidence 345666555 455666665433 333555554333 34445556666642211 11224 334
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 011598 77 WAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFF 156 (482)
Q Consensus 77 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~ 156 (482)
+||...++.-....+........+..+.++-+.+++.. +....++....-.+.+.....+| -+|..+++
T Consensus 134 ~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~---------~~~~~~s~~~~i~~~~~~~lll~--~Ir~Lk~L 202 (449)
T KOG1304|consen 134 YGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE---------HSPGVLSVRLYILIQLPPLLLLN--LIRNLKIL 202 (449)
T ss_pred hcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc---------cCCCCccHHHHHHHHHHHHHHHH--HHHhhHHh
Confidence 88889999998888888777777788888878777642 11222333333333333333333 23344444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhcccccc
Q 011598 157 GQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADR 236 (482)
Q Consensus 157 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k 236 (482)
.-...+..+..++.+.+.......+.++ ..+ ...+.+ ..++...+..++|+|-|.-.+-.+-+|+|+| |
T Consensus 203 sp~Sl~Anv~~~~g~~ii~~y~~~~~~~-------~~~--~~~~~~-~~~~~lf~GtaifafEGig~VLPlEn~Mk~P-~ 271 (449)
T KOG1304|consen 203 SPFSLFANVFILVGLAIIMYYLVQDLPP-------TSD--LPAVTG-WSGLPLFFGTAIFAFEGIGMVLPLENSMKKP-Q 271 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCC-------ccc--cccccc-hhhhHHHHHHHHHHhccceEEEehhhcccCh-h
Confidence 4444444444444444443332221111 101 111211 2448888899999999999999999999998 4
Q ss_pred ccc---hHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHH
Q 011598 237 NGP---KGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFF 313 (482)
Q Consensus 237 ~ip---~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 313 (482)
+.| +.+-.++.++.++|....+.=....+ ++..++-.-+ .|. .++...+-+...++.+-
T Consensus 272 ~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG--~~v~~sITLN--LP~--------------~~l~~~Vkl~~ai~I~l 333 (449)
T KOG1304|consen 272 KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFG--DDVKGSITLN--LPQ--------------EILSQTVKLLLAIAIFL 333 (449)
T ss_pred hcCCccchHHHHHHHHHHHHHHHHHHHHhhcc--ccccceEEec--CCc--------------cHHHHHHHHHHHHHHHH
Confidence 555 88999999999999887766555553 2221111000 122 12444556667777777
Q ss_pred Hhhhhhhhhhhhhhhh
Q 011598 314 CGMSSVTSNSRMAYAF 329 (482)
Q Consensus 314 ~~~~~~~~~sR~l~a~ 329 (482)
+---+++..-++++.-
T Consensus 334 s~pLQ~yv~~eIi~~~ 349 (449)
T KOG1304|consen 334 TYPLQFYVPIEIIEPG 349 (449)
T ss_pred cCchhhhhhHHHHHHh
Confidence 7777788887877764
No 59
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.42 E-value=0.0022 Score=63.77 Aligned_cols=122 Identities=11% Similarity=-0.036 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 34 LVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIIL 113 (482)
Q Consensus 34 ~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (482)
++++.+++-++........++++.....+ ...-.|.. ||..-+.+.....++.+....+......++...
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~----fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~---- 123 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYP----FGVKGSILPSLLNGITLIGWFGVNVILSGIAIG---- 123 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeeccc----ccchhHHHHHHHHHHHHhhHHHHHHHHhccccc----
Confidence 46666666666666666666777665432 44445555 666666666665555544333333333333211
Q ss_pred HhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011598 114 LSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIP 176 (482)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~ 176 (482)
..+..+.....++.-++.++...+|.|...+++++......+..+......+
T Consensus 124 -----------~~~~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~ 175 (442)
T COG1457 124 -----------SGTGLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLF 175 (442)
T ss_pred -----------cCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112233334445556678888999999999999998888776666555544
No 60
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.32 E-value=0.0013 Score=65.44 Aligned_cols=295 Identities=13% Similarity=0.138 Sum_probs=147.5
Q ss_pred hhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcC---C----CChhhhHHHhhcCC
Q 011598 3 SNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYP---T----SGGLYYWSAKLAGP 75 (482)
Q Consensus 3 ~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p---~----~Gg~y~~~~~~~~~ 75 (482)
++++.+.+.....+.|...+.. +..+||...+|.|+.+.+. ....+.-.-++..+. + .||...|.++..+.
T Consensus 51 qA~~~ala~~VG~GnI~Gva~A-i~~GGpGAvFWMWI~allG-m~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~ 128 (425)
T TIGR00835 51 QALFTSLAARVGIGNIVGVATA-IAIGGPGAVFWMWVTAFIG-MATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGM 128 (425)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH-HHhcCCCchHHHHHHHHHH-HHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCc
Confidence 4556666655555556666555 7889996557767755443 333333333444333 2 24555888888432
Q ss_pred CCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHH
Q 011598 76 KWAPFASWMTGWFNIVGQWA-VTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILS 154 (482)
Q Consensus 76 ~~g~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~ 154 (482)
|++|.+.... .+.+.. ......-...+.+.. . +.. +....++++.++...+-.-|+|..+
T Consensus 129 ---k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~---~---------~~~---~~~v~~i~l~~l~~~vi~GGik~Ia 189 (425)
T TIGR00835 129 ---RWLAVLFAVF-LIASFGIGNMVQANAIASALSN---A---------FNV---PKLVTGIVLTVLTALIIFGGLKRIA 189 (425)
T ss_pred ---cHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHH---H---------cCC---cHHHHHHHHHHHHHHHHhcCchHHH
Confidence 3455554444 333311 111122222222221 1 212 3445566666777777777999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccc--cccceeccccCCCCCCcchhh------HHHhhHhHhHhh---hcccc
Q 011598 155 FFGQLAAAWNLVGVMVLMILIPSVSTERASA--KFVFTHFNSDNGDGINSKVYI------FVLGLLMSQYTL---TGYDA 223 (482)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~a~---~G~e~ 223 (482)
++.....-.+....+...+.......++-++ ...+++..+++. -.++..+ +-.++.=..|+- .|...
T Consensus 190 ~v~~~lvP~m~~~Y~~~~l~ii~~n~~~lp~~~~~If~~AF~~~a--~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~ 267 (425)
T TIGR00835 190 KISSVVVPFMALLYVIMALYIIIMNIEQLPAVISLIFRSAFGGDA--AAGGFAGSTVAQAIMIGVKRGLFSNEAGMGSAP 267 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCchh--hHhHHHHHHHHHHHHHhhHHHHhccccccCcHH
Confidence 9999988888777665555433322111111 112222222111 1111111 111222234443 34445
Q ss_pred cchhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHH
Q 011598 224 SAHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVC 303 (482)
Q Consensus 224 ~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 303 (482)
.++.+.|++||.|+=-.++.-..+=+.++-....+.+.. .+.+++- +.. .+. +....++++.+| ++...++
T Consensus 268 ~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~-tg~~~~~-~~~---~g~---~lt~~af~~~~g-~~g~~~v 338 (425)
T TIGR00835 268 IAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILL-SGVWNNG-EGL---SGA---QLTQQALSYGLG-SFGAVFV 338 (425)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCccCCC-CCC---cHH---HHHHHHHHHHhh-hhHHHHH
Confidence 666688888998775555444433222222222222211 1112110 010 112 222344444432 2467899
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011598 304 LGVVAVAIFFCGMSSVTSNSRMAYAF 329 (482)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~sR~l~a~ 329 (482)
.+.+++-.+++..++.+..-+.+.-+
T Consensus 339 ~i~~~lFaftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 339 AVALFLFAFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988777776655
No 61
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.17 E-value=4.1e-07 Score=91.85 Aligned_cols=355 Identities=12% Similarity=0.124 Sum_probs=178.4
Q ss_pred HHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhh---HHHhhcCCCCCcchhH
Q 011598 7 FSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYY---WSAKLAGPKWAPFASW 83 (482)
Q Consensus 7 ~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~---~~~~~~~~~~g~~~g~ 83 (482)
+.+-+....+|++..|- ++..+|-...++..++.++..........|.....|+..+..+ -.++. +|+..+.
T Consensus 10 ~~l~~~~iG~G~L~lP~-af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~----~G~~~~~ 84 (409)
T PF01490_consen 10 FNLINSIIGAGILSLPY-AFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRA----FGPKGKW 84 (409)
T ss_pred HHHHHHHHhHHHHHHHH-HHHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccccccccccccccc----ccccccc
Confidence 34445556677777754 4444776555666777778888888888888887762223333 34555 7777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Q 011598 84 MTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINS-LPISILSFFGQLAAA 162 (482)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~-~g~~~~~~~~~~~~~ 162 (482)
+...+..+........+....++.+..++.... .. ...+.....++ ...+...++. +..+..+..+....+
T Consensus 85 ~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~----~~-~~~~~~~~~~i---~~~i~~pls~~~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 85 FVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFF----GD-LFISRYVWIII---FALIVLPLSFLKNLKSLRYLSILGLF 156 (409)
T ss_pred cccchheeccccccceeEEEeeeeeeccccccc----cc-ccccccccccc---cccccccccccchhhHHHHHhhhhhh
Confidence 777766666555555566666666666553311 00 01111111122 2222222222 233333322222222
Q ss_pred HHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhcccccc--ccch
Q 011598 163 WNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADR--NGPK 240 (482)
Q Consensus 163 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k--~ip~ 240 (482)
..+.. +.+.+.........+..+. ..+ ......+..++..++....|+|.+......+.+|+|||+| ++.|
T Consensus 157 ~~~~~-~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~ 229 (409)
T PF01490_consen 157 SIFYF-IVIVVIYIISYGPGEPSGV----PSP--PVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKK 229 (409)
T ss_pred cccee-eeeecceeeeeeccccccc----ccc--cccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccce
Confidence 21111 0111111111111111110 000 0001112356889999999999999999999999999865 5669
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 011598 241 GIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVT 320 (482)
Q Consensus 241 ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (482)
+...+...+.++|.+....-....++ +..++ .. ..+.+. ++...+..+...+....+..-...
T Consensus 230 ~~~~s~~~~~~~y~~~g~~gy~~fg~--~~~~~-----------il-~n~~~~---~~~~~i~~~~~~i~~~~s~pl~~~ 292 (409)
T PF01490_consen 230 VLSISMIICFIIYLLFGIFGYLAFGD--SVQGN-----------IL-LNLPND---DVLIIIARILLVISLLLSYPLQLF 292 (409)
T ss_pred eeeehhhhhhHHhhhhhhcccceeee--eecch-----------hh-hcCCCc---ccccccccccchhhhhhccccccc
Confidence 99999999999999988777665531 11110 00 111110 113334455555555555555555
Q ss_pred hhhhhhhhhccCC--CCCccccceecCCCC-chHHHHHH-HHHHHHHHHHhhhchHHHHHHHHHHH--HHHHHHHHHHHH
Q 011598 321 SNSRMAYAFSRDG--AMPFSSFWHEVNSQD-IPINAVWL-SAFISFCMALTYLGSAVAFQAMVSIA--TIGLYIAYALPI 394 (482)
Q Consensus 321 ~~sR~l~a~a~dg--~lP~~~~f~~~~~~~-~P~~ai~~-~~~i~~i~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~ 394 (482)
...+.+...-+++ .-+ +. .+..+++ .....+-. ..+.+.++.. . .+.++.+.++. .....+.|.++.
T Consensus 293 p~~~~l~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~iA~-~---vp~~~~i~~l~Ga~~~~~i~fi~P~ 365 (409)
T PF01490_consen 293 PARNSLENLLFKRAASSR--DS-PKNTPSSRWLRYLIRIILVLLSFLIAI-F---VPNFGDIISLVGALFGSFISFILPA 365 (409)
T ss_pred hhHhhhhhheeccccccc--cc-cccccccceeeeeeecchhhhhhhhhh-h---ccchhhhhcccchHHHHhHHHHHHH
Confidence 5555555544332 000 00 0000011 11111111 1111111111 1 13456666664 344568888999
Q ss_pred HHHHHhccccC
Q 011598 395 FFRVTLARKSF 405 (482)
Q Consensus 395 ~~~~~~r~~~~ 405 (482)
..+.+.+++++
T Consensus 366 l~~~~~~~~~~ 376 (409)
T PF01490_consen 366 LLYLKLFKRKR 376 (409)
T ss_pred HHHHHhhcccc
Confidence 99999877653
No 62
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.16 E-value=0.0042 Score=61.82 Aligned_cols=249 Identities=14% Similarity=0.061 Sum_probs=128.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc---ccceeccccCCCCCCcch
Q 011598 128 KYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAK---FVFTHFNSDNGDGINSKV 204 (482)
Q Consensus 128 ~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 204 (482)
.+...+..+++..+...+.++.-|...++.++++-+.++.++++++.++....++..++ +..+++.+ |+.. +
T Consensus 115 ~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~----Gf~e-G 189 (427)
T PF05525_consen 115 NISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFK----GFLE-G 189 (427)
T ss_pred ccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHH----HHHH-H
Confidence 34556667778888899999999999999999999999999999999888654332221 11111111 1221 1
Q ss_pred hhHHHhhHhHhHhhhcccccchhhhhccc---cccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCc
Q 011598 205 YIFVLGLLMSQYTLTGYDASAHMTEETKN---ADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYA 281 (482)
Q Consensus 205 ~~~~~~~~~~~~a~~G~e~~~~~~~E~k~---P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (482)
++..-++....| ...-..+--....|| -+|..-++-.++.....++|......-.... ....+.. +.++.
T Consensus 190 Y~TMD~laal~F--g~iIi~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~---~~~~~~~--~g~~l 262 (427)
T PF05525_consen 190 YQTMDALAALAF--GIIIINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSS---GSFPDDI--NGAEL 262 (427)
T ss_pred HhhhhHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc---ccccCCC--CHHHH
Confidence 222222222222 221112222222233 2333444444444444455544333222211 1111111 11223
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCccccceecCCCCchHH-HHHHHHHH
Q 011598 282 IAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPIN-AVWLSAFI 360 (482)
Q Consensus 282 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~-ai~~~~~i 360 (482)
..+...+.+|+. ...++.+.+.++|+.+......+.+....+ ..| |.+++ ...+..++
T Consensus 263 L~~i~~~~~G~~-----G~~ll~iiv~lACLTTaIGL~~a~a~yf~~---------------~~~-kisY~~~v~i~~i~ 321 (427)
T PF05525_consen 263 LSQIANHLFGSA-----GQILLGIIVFLACLTTAIGLISACAEYFSE---------------LFP-KISYKVWVIIFTIF 321 (427)
T ss_pred HHHHHHHHcChh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------Hhc-ccChHHHHHHHHHH
Confidence 333333444443 788999999999999999988887765544 333 23333 33333444
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccc
Q 011598 361 SFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNL 412 (482)
Q Consensus 361 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 412 (482)
+.++.- .+.+........+-...+-..-.++.........+ +++..||.
T Consensus 322 S~~ian--~Gl~~Ii~~s~PiL~~iYP~~IvLIll~l~~~~~~-~~~~~y~~ 370 (427)
T PF05525_consen 322 SFIIAN--LGLDQIIKISVPILMFIYPVAIVLILLNLFDKFIK-NKKIVYRG 370 (427)
T ss_pred HHHHHH--hCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCceeee
Confidence 444333 44444455555555555555555555555443322 22445664
No 63
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=98.06 E-value=0.011 Score=58.30 Aligned_cols=299 Identities=13% Similarity=0.112 Sum_probs=154.1
Q ss_pred hhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcC----C---CChhhhHHHhhcCC
Q 011598 3 SNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYP----T---SGGLYYWSAKLAGP 75 (482)
Q Consensus 3 ~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p----~---~Gg~y~~~~~~~~~ 75 (482)
++++.+.+... .+|=.+....++..+||...+|.|+.+.+ ...+.++=.-++..+. + .||...|.+|.++.
T Consensus 67 qAl~~sla~~V-GtGNIaGVAtAI~~GGPGAvFWMWi~Al~-Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~~ 144 (452)
T COG1115 67 QALMTSLAARV-GTGNIAGVATAIALGGPGAVFWMWIVALF-GMATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLGM 144 (452)
T ss_pred HHHHHHHHhcc-CcchHHHHHHHHHcCCCccHHHHHHHHHH-HHHHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcCC
Confidence 34444554333 23334445667778999655777775544 3334444334555443 2 58999999999553
Q ss_pred CCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHH
Q 011598 76 KWAPFASWMTGWFNIVGQW-AVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILS 154 (482)
Q Consensus 76 ~~g~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~ 154 (482)
| +.+.+.+....+.+- ......+-..++.+.+. +.. +....++++.++...+-.-|+|..+
T Consensus 145 r---~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~a------------f~~---~~~~~gi~la~l~~~VI~GGi~rIa 206 (452)
T COG1115 145 R---WLAVLFAFALIAAFGFIGNGVQSNSIASALANA------------FGI---PPLVTGIVLALLVALVIFGGIKRIA 206 (452)
T ss_pred c---HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHh------------cCC---cHHHHHHHHHHHHHHHHHcchHHHH
Confidence 3 244444433333322 12222222222333322 222 3566788888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccc--cccceeccccC--CCCCCcc--hhhHHHhhHhHhHhh---hcccccc
Q 011598 155 FFGQLAAAWNLVGVMVLMILIPSVSTERASA--KFVFTHFNSDN--GDGINSK--VYIFVLGLLMSQYTL---TGYDASA 225 (482)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~a~---~G~e~~~ 225 (482)
|+.....-.+-+.-++..+..+...-++-+. ...+++...++ ..++.+. ...+..++.=..|+- .|....+
T Consensus 207 ~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~a 286 (452)
T COG1115 207 KVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIA 286 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhH
Confidence 9888877777666555555544433222111 11111111100 0111110 011222333345544 3344456
Q ss_pred hhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHH
Q 011598 226 HMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLG 305 (482)
Q Consensus 226 ~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 305 (482)
+.+.+++||.|+=-..+.-..+=..++-....+.+.. .+.++.... ..|. +...+++++.+|. +...++.+
T Consensus 287 aAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~-sg~~~~~~~----~~G~---~ltq~A~~~~~g~-~G~~fv~i 357 (452)
T COG1115 287 AAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILL-SGAWNSGGG----LSGA---ALTQAAFSSHLGS-WGSYFVAI 357 (452)
T ss_pred HHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHH-cCCcccCCC----CchH---HHHHHHHHHhcCc-cHHHHHHH
Confidence 6677788887765444443333122221222222221 111211110 0112 3333455554443 48889999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhc
Q 011598 306 VVAVAIFFCGMSSVTSNSRMAYAFS 330 (482)
Q Consensus 306 ~~~~~~~~~~~~~~~~~sR~l~a~a 330 (482)
.+.+-.+++.+.+.+..=|-+.-+-
T Consensus 358 ~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 358 ALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888877776543
No 64
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.99 E-value=0.029 Score=57.96 Aligned_cols=246 Identities=15% Similarity=0.118 Sum_probs=109.0
Q ss_pred HHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccc
Q 011598 48 VGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPF-ASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEA 126 (482)
Q Consensus 48 ~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (482)
.+.-+.+++++. +.=....|.++- ||+. ..........+......+......+..++.+++ .
T Consensus 94 ~~~~~~~~~r~~-~~~T~~e~l~~R----yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g------------i 156 (483)
T PRK09442 94 LGKKFAILARKY-NAVTLNDMLRAR----YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG------------I 156 (483)
T ss_pred HHHHHHHHHHHc-CCccHHHHHHHH----hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------C
Confidence 334455566654 345677888887 6643 344554444443333344444444455554431 1
Q ss_pred chhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--cc---cceeccccCCCCCC
Q 011598 127 SKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASA--KF---VFTHFNSDNGDGIN 201 (482)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~ 201 (482)
+.+...++ ..++.......-|.|.......+-.++.++..+++.+..+...++.... .. ..+.+.+++..++.
T Consensus 157 ~~~~~iii--~~~iv~iYt~~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (483)
T PRK09442 157 SYETGLLI--FGITVALYTAFGGFRAVVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDIL 234 (483)
T ss_pred CHHHHHHH--HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccc
Confidence 22222222 2223344555667777777777666666665555544433322211000 00 00001110001111
Q ss_pred cchhhHHHhh-HhHhHhhhcccccchhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCC
Q 011598 202 SKVYIFVLGL-LMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGY 280 (482)
Q Consensus 202 ~~~~~~~~~~-~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (482)
+ ......+ ....+...+.....+-.=..|| +|+..|+...+.+....+++...+.-.....-.++..+.+ .
T Consensus 235 ~--~~~~~~~~~~~~~g~~~~p~~~qR~~aaks-~~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~~~~~-----~ 306 (483)
T PRK09442 235 S--PPFMTSFWILVCFGVIGLPHTAVRCMSYKD-SKALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDLTVPD-----K 306 (483)
T ss_pred c--HHHHHHHHHHHHHHHhCCCHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc-----c
Confidence 1 1111111 1112222333322233333577 4777888888876666655444332211110011111111 2
Q ss_pred cHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011598 281 AIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRM 325 (482)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 325 (482)
..+....+. -++++.-++...++.+.+++..+.+.+.+-.
T Consensus 307 ~~p~l~~~~-----lp~~l~gl~~a~~~aA~mST~~s~l~~~ss~ 346 (483)
T PRK09442 307 VIPTLMLKV-----LPPFAAGIFLAAPMAAIMSTVDSQLLQSSST 346 (483)
T ss_pred hHHHHHHHH-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332332222 2344666777777788888877777655543
No 65
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.91 E-value=0.04 Score=56.73 Aligned_cols=244 Identities=14% Similarity=0.086 Sum_probs=108.1
Q ss_pred HHHHhhhhcCCCChhhhHHHhhcCCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchh
Q 011598 51 SMAEICSSYPTSGGLYYWSAKLAGPKWAPF-ASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKY 129 (482)
Q Consensus 51 ~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (482)
-+.++.++. +.-..+.|.++- +|+. .....+....+.............+..+..+++ .+.+
T Consensus 96 ~~~~~~~~~-~~~T~~e~l~~R----yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g------------i~~~ 158 (471)
T TIGR02119 96 KFAIISRKY-NAITINDVLKAR----YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG------------LSYL 158 (471)
T ss_pred HHHHHHHHc-CCccHHHHHHHH----cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHH
Confidence 344455544 345788888888 5532 344444333333222233333333344444321 1222
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--ccc---cceeccccCCCCCCcch
Q 011598 130 VVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERAS--AKF---VFTHFNSDNGDGINSKV 204 (482)
Q Consensus 130 ~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~ 204 (482)
...++. .++.......-|.|...+.+.+-.++.++..+++.+..+...++... ++. ..+...+++..++..
T Consensus 159 ~~iii~--~~iv~iYt~~GG~~av~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~-- 234 (471)
T TIGR02119 159 TALFIF--SSSVLIYTTFGGFRAVALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLT-- 234 (471)
T ss_pred HHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchh--
Confidence 222222 22334455566778877777777666666555554444333221100 000 000001100001000
Q ss_pred hhHHHhh-HhHhHhhhcccccchhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHH
Q 011598 205 YIFVLGL-LMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIA 283 (482)
Q Consensus 205 ~~~~~~~-~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (482)
..+...+ ....+...+.....+-.-..|| +|+..|+...+.+....++....+.-.....-.++..+.+ ..++
T Consensus 235 ~~~~~~~~~~~~~g~~~~p~~~~R~~aak~-~~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d-----~~~p 308 (471)
T TIGR02119 235 KPFVASFWILVGIGVIGLPQTAVRCMSYKD-SKAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPD-----KVIP 308 (471)
T ss_pred hhHHHHHHHHHHHHHhCchHHHHHHHhcCC-HHHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCcc-----chHH
Confidence 0111111 1111222333333444555677 5888899988877666655444332211110011221112 2333
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011598 284 EIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMA 326 (482)
Q Consensus 284 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 326 (482)
....+.+ +++..-++...++.+.+++..+.+.+.+-.+
T Consensus 309 ~~~~~~l-----p~~~~gl~~a~llaA~mST~~s~l~~~ss~~ 346 (471)
T TIGR02119 309 LLAIKVL-----PPILAGIFLAAPMAAIMSTVNSLLLQSSSTI 346 (471)
T ss_pred HHHHHHc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332322 2345666677777778888877777665553
No 66
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.87 E-value=0.031 Score=54.49 Aligned_cols=241 Identities=16% Similarity=0.105 Sum_probs=121.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc---ccccceeccccCCCCCCcch
Q 011598 128 KYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERAS---AKFVFTHFNSDNGDGINSKV 204 (482)
Q Consensus 128 ~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 204 (482)
+....+..++.-.+...+.+...|...|+.++++-++++.++.+.+..+....+... +.+..+++.+ ||.++.
T Consensus 117 ~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~----GfleGY 192 (431)
T COG1114 117 LPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSK----GFLEGY 192 (431)
T ss_pred chHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHH----HHhcch
Confidence 345566677788888899999999999999999999999998888887765543222 1222223322 333322
Q ss_pred hhHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHH
Q 011598 205 YIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAE 284 (482)
Q Consensus 205 ~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (482)
...-++.. ++|...-..+.-..-.+++ |+..|-...+-++..+.-.+...+....-+...+. ..+.++.+.-..+
T Consensus 193 -~TMDaLAa--l~FgivIv~alk~~g~~~~-~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~-~~~~~nG~~IL~~ 267 (431)
T COG1114 193 -LTMDALAA--LAFGIVIVNALKSKGVTTK-KQIIKYTIKAGLIAAILLALIYLSLFYLGATSASA-AGLAANGGQILSA 267 (431)
T ss_pred -HHHHHHHH--HHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhh-cccccchHHHHHH
Confidence 22222222 2233222222222333332 34444444433333332222222222222111222 1211122233333
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHH
Q 011598 285 IFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCM 364 (482)
Q Consensus 285 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~ 364 (482)
.-.+.+|+. ...+....+.++|+.+......+.+ |+|+|+-|+=+......+..+++.++
T Consensus 268 ~s~~~fG~~-----G~~lL~~iv~lACLTTaiGLi~a~a---------------efF~~~~p~~SY~~~v~if~i~sflv 327 (431)
T COG1114 268 YSQHLFGSY-----GSILLGLIVFLACLTTAVGLIVACA---------------EFFSKLVPKLSYKTWVIIFTLISFLV 327 (431)
T ss_pred HHHHHhchh-----hHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhcccccHHHHHHHHHHHHHHH
Confidence 344444444 6778888889999988888777665 55666555412222333333344332
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 365 ALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVT 399 (482)
Q Consensus 365 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 399 (482)
.- .+.+......+.+-...+-+.-.+.+....+
T Consensus 328 an--~GL~~Ii~isvPvL~~iYPiaI~Lv~l~~~~ 360 (431)
T COG1114 328 AN--LGLEQIIKISVPVLTAIYPIAIALVLLSFAR 360 (431)
T ss_pred HH--hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 3334444444444455555555555555443
No 67
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.79 E-value=0.0026 Score=64.13 Aligned_cols=139 Identities=9% Similarity=-0.019 Sum_probs=60.2
Q ss_pred HHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch--hHHHHHHHHHHHHH
Q 011598 18 ITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA--SWMTGWFNIVGQWA 95 (482)
Q Consensus 18 i~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~--g~~~~~~~~~~~~~ 95 (482)
+...++...+ .|.. ..+..+...+......+.++.--++. +.-....|.++- +|+.. ..+......+....
T Consensus 27 ~~G~~g~~y~-~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~~~~R----yg~~~~~~~~~~i~~i~~~~~ 99 (406)
T PF00474_consen 27 FIGFPGFAYS-YGIS-GLWYAIGYAIGFLLFALFFAPRLRRS-GAVTIPEYLEKR----YGSKALLRILAAIIIIVFMIP 99 (406)
T ss_dssp HTHHHHHHHH-T-GG-GGHHHHHHHHHHHHHHHHTHHHHHHT-T--SHHHHHHHH----T-HHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhc-CCcc-eeeeccccchhHHHHHHHHHHhhccc-chhhhhhhhhhh----cCCchhhhhhcccccchhhhh
Confidence 4445566665 4543 32222222233334444444444433 345788888888 66666 44444434444344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011598 96 VTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILI 175 (482)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~ 175 (482)
..+......+..+...++ .+.....++ ...+.......-|.|...+...+-.++.++..+++.+..
T Consensus 100 ~~~~q~~~~~~~~~~~~g------------i~~~~~~~i--~~~i~~iYt~~GGl~av~~td~iQ~~i~~~~~~~~~~~~ 165 (406)
T PF00474_consen 100 YLAAQLVGGGALLSVLFG------------IPYNTAILI--VGVIVIIYTFFGGLRAVAWTDFIQGVIMIIGAIVVLIFV 165 (406)
T ss_dssp HHHHHHHHHHHHHHHHTT--------------HHHHHHH--HHHHHHHTTCTT------SHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccchhhccc------------hhhhHHHHH--HHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHHhhhcc
Confidence 444444444455544321 111122222 222333344555788777766666666655555555544
Q ss_pred hh
Q 011598 176 PS 177 (482)
Q Consensus 176 ~~ 177 (482)
+.
T Consensus 166 ~~ 167 (406)
T PF00474_consen 166 LS 167 (406)
T ss_dssp HH
T ss_pred ch
Confidence 43
No 68
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.74 E-value=0.047 Score=55.04 Aligned_cols=139 Identities=14% Similarity=0.027 Sum_probs=72.2
Q ss_pred HHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCc-chhHHHHHHHHHHHHHH
Q 011598 18 ITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAP-FASWMTGWFNIVGQWAV 96 (482)
Q Consensus 18 i~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~ 96 (482)
....++.+.. .|-. ..+..+...+..+..+..+.+.-++.+ .-....|.++- +|+ ....+.+....+.....
T Consensus 24 ~ig~~~~~y~-~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~R----yg~~~~~~~~~~~~i~~~~~~ 96 (407)
T TIGR00813 24 FLGLPGAIYA-YGFA-IGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKR----FGKRILRGLSVLSLILYIFLY 96 (407)
T ss_pred HhcCcHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHH----hCchHHHHHHHHHHHHHHHHH
Confidence 3444444444 3432 222222233345556666666655543 45677788877 665 35555555555554555
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011598 97 TTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIP 176 (482)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~ 176 (482)
.+......+..+...++. +.+...++ ...++......-|.|.......+=.++.++..+++.+..+
T Consensus 97 ~~~q~~g~~~il~~~~gi------------~~~~~~ii--~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~~~i~~~~~~~ 162 (407)
T TIGR00813 97 MSVDLFSGALLIELITGL------------DLYLSLLL--LGAITILYTVFGGLKAVVWTDTIQAVIMILGTFILPVFAF 162 (407)
T ss_pred HHHHHHHHHHHHHHHhCc------------hHHHHHHH--HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554321 22222222 2233334455568888777777766666665555444444
Q ss_pred h
Q 011598 177 S 177 (482)
Q Consensus 177 ~ 177 (482)
.
T Consensus 163 ~ 163 (407)
T TIGR00813 163 S 163 (407)
T ss_pred H
Confidence 3
No 69
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.72 E-value=0.056 Score=55.77 Aligned_cols=100 Identities=9% Similarity=-0.047 Sum_probs=59.7
Q ss_pred hHHHHHHHhhh-hHHHHhHhhhccccChhhHHHHHH---HHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCC-c
Q 011598 5 FAFSFSIISVL-TGITTLYNTGLNFGGPISLVYGWL---IAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWA-P 79 (482)
Q Consensus 5 ~~~~~~~~~~~-~gi~~~~~~~~~~~G~~~~~~~~i---i~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g-~ 79 (482)
.+++....... ..+...++.+... |....++... ...+.....+--..+++ ..++.=..++|.++- || +
T Consensus 45 ~~ls~~as~~s~~t~lG~~g~ay~~-G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~~R----f~s~ 118 (493)
T COG0591 45 YALSAAASDTSGWTFLGLPGLAYAS-GLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLEAR----FGSK 118 (493)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHHHH----cCCh
Confidence 34444444444 3356666666664 4432333322 22334445555556666 555566888898888 77 7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 80 FASWMTGWFNIVGQWAVTTSVDFSLAQMIQV 110 (482)
Q Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (482)
....+.+....+......+......+..+..
T Consensus 119 ~lr~l~ali~iv~~i~yia~ql~~~~~~~~~ 149 (493)
T COG0591 119 ILRILSALIIIVFFIPYIALQLVAGGLLLSL 149 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7888888777777676677666666665543
No 70
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.72 E-value=0.042 Score=54.33 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=33.5
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 011598 288 LAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFS 330 (482)
Q Consensus 288 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 330 (482)
+.++...|.++...++.+..+.+.+++..+...+.+|.+.+.-
T Consensus 243 ~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 243 QALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 4555555545588899999999999999999888888877654
No 71
>PRK11017 codB cytosine permease; Provisional
Probab=97.66 E-value=0.082 Score=53.17 Aligned_cols=183 Identities=11% Similarity=-0.024 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 33 SLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVII 112 (482)
Q Consensus 33 ~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (482)
.++++.+++.++........+..+.+.- =......|.. ||..-+.+.+....+......+.........+....
T Consensus 43 ~ai~aiilG~~i~~~~~~l~~~~G~k~G--~~~~v~sR~~----FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~ 116 (404)
T PRK11017 43 DFLLAVLIGNLLLGIYTAALGYIGAKTG--LSTHLLARFS----FGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT 116 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC--cCHHHHHHHH----hchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4566666666554444444444454442 2577788888 666666655555444433333333333333333322
Q ss_pred HHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccceec
Q 011598 113 LLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHF 192 (482)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 192 (482)
+ . +... ..++..++.......|.|...|++++......+..+...+......+. ..+. .+.
T Consensus 117 ~----------~--~~~~---~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g--~~~~--~~~ 177 (404)
T PRK11017 117 G----------L--DINL---LIVLSGLLMTVTAYFGISALTILSRIAVPAIALLGGYSVWLAVNDVGG--LDGL--KAI 177 (404)
T ss_pred C----------C--CHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhh--hcC
Confidence 1 1 1111 222344555667788888888888887776665544433322222211 1110 010
Q ss_pred cccCCCCCCcchhhHHHhhHhHhHh-hhcccccchhhhhccccccccchHHHHHHHH
Q 011598 193 NSDNGDGINSKVYIFVLGLLMSQYT-LTGYDASAHMTEETKNADRNGPKGIISAIGI 248 (482)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~a-~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~ 248 (482)
.+ .+ . ..+..++...+=. .++.-..+.+++..|+|| +...+...+..+
T Consensus 178 ~~--~~-~----~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~-~~~~~~~lg~~i 226 (404)
T PRK11017 178 VP--AE-P----LDFSAALTLVVGSFISGGTLTADFVRFGRSAK-IAVLATMVAFFL 226 (404)
T ss_pred CC--CC-c----ccHHHHHHHHHHHHHHhHhcCCChHhhccCcc-ceeehhHHHHHH
Confidence 01 11 1 1233333322111 244556778888988864 433555555443
No 72
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.57 E-value=0.12 Score=52.44 Aligned_cols=45 Identities=7% Similarity=0.095 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhhhcCC-CC-hhhhHHHhhcCCCCCcchhHHHHHHHHHH
Q 011598 44 FTLFVGSSMAEICSSYPT-SG-GLYYWSAKLAGPKWAPFASWMTGWFNIVG 92 (482)
Q Consensus 44 ~~l~~a~~~ael~~~~p~-~G-g~y~~~~~~~~~~~g~~~g~~~~~~~~~~ 92 (482)
+..+....+.|++.+.-. +| |...-.++- +|+.+++.......+.
T Consensus 73 ls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~----~~~~~~~~~~~~~~l~ 119 (439)
T PRK00701 73 LSNLMAMLLQSLSAKLGIATGRDLAQACRDR----YPRPVVWFLWIQAELA 119 (439)
T ss_pred HHHHHHHHHHHHHhHhhhhcCCCHHHHHHHH----CCchHHHHHHHHHHHH
Confidence 444555666777776654 34 566666666 7776776554433333
No 73
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.45 E-value=0.16 Score=51.10 Aligned_cols=217 Identities=8% Similarity=-0.034 Sum_probs=110.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 31 PISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQV 110 (482)
Q Consensus 31 ~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (482)
+..++++.+++-++....+..-+..++.+-. ..-.-.|.. ||-.-+-.-.....+.-..--...++..+.-+..
T Consensus 73 ~~qallai~vG~~iv~i~m~Lng~~G~~~gI--pFpv~~RaS----FGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~l 146 (497)
T COG1953 73 PWQALLAILVGNLIVAIFMVLNGHAGSKYGI--PFPVLSRAS----FGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNL 146 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccccCC--CchHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4446777777777766666666666655532 355667777 5544444333333322222233334444444444
Q ss_pred HHHHhcCC-CCCC--C-cccchhHHHHHHHHHH-HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 011598 111 IILLSTGG-KNGG--G-YEASKYVVIAFHGGIL-LLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASA 185 (482)
Q Consensus 111 ~~~~~~~~-~~~~--~-~~~~~~~~~~i~~~~~-~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 185 (482)
++...... ..+. . ....+ ....+++.+. .+...+-..|.+...|++.+...++.+..+.+.+-.....++....
T Consensus 147 lL~~i~~~~~~~~~~~~~lg~t-t~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~ 225 (497)
T COG1953 147 LLGSIFPSLLIPNTLSPLLGLT-TLELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSIL 225 (497)
T ss_pred HHHHhccccccCCccccccCCc-HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCcc
Confidence 44321111 1111 1 11122 2334444444 4455577789999999999999999999988888887766643222
Q ss_pred cccceeccccCCCCCCcchhhHHHhhHhHhHhh-hcccccchhhhhccccccccchHHHHHHHHHHHHHHHHHHHH
Q 011598 186 KFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTL-TGYDASAHMTEETKNADRNGPKGIISAIGISIIFGWGYILGI 260 (482)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~ 260 (482)
.... .. ..+-+...+.++.++....=.+ +..-..+..+++.|+| |+.-++-..++.+...+.-+.....
T Consensus 226 ~~~p---~~--~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s~-~~~~~gq~~gLPv~~~l~~ligvv~ 295 (497)
T COG1953 226 GELP---AG--TVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKSQ-KAQIWGQLVGLPVNFALFSLIGVVV 295 (497)
T ss_pred ccCC---CC--CCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCCh-hhhhhccchhhhHHHHHHHHHHhhH
Confidence 1111 01 1111111233433332221111 3344567788888885 4444555555555554444433333
No 74
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=97.40 E-value=0.055 Score=54.03 Aligned_cols=241 Identities=11% Similarity=0.025 Sum_probs=120.1
Q ss_pred HHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHH
Q 011598 7 FSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTG 86 (482)
Q Consensus 7 ~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~ 86 (482)
+++.+....+|+...|. ++..+|-...++.....+...........+.+...++. ..-.-.++.. ++.|+.......
T Consensus 13 ~nl~~ti~GaGIl~~P~-afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~-g~~g~~~~~v~~ 89 (411)
T KOG1305|consen 13 FNLVNTIMGAGILAMPY-AFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIF-GKLGKVDAAVAV 89 (411)
T ss_pred HHHHhhhhccHHHHhHH-HHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHc-CCCceeeehhhH
Confidence 45566677788888754 45556765446666777777888888888888888876 4444455552 222322222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-cccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 011598 87 WFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGG-YEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNL 165 (482)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 165 (482)
-+..++ ...+.....+.+.........+..... |........+.....+.-..+.+ .. -.-|.....++...
T Consensus 90 ~~~~~g----~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k--~l-~~Lk~tS~~s~~~~ 162 (411)
T KOG1305|consen 90 KCFGVG----MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLK--NL-DSLKYTSALSLASV 162 (411)
T ss_pred Hhhhcc----ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHH--hh-hhHHHHHHHHHHHH
Confidence 111111 011111112222221111000000000 11111101222222222222222 11 12223333333333
Q ss_pred HHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccc-cccchHHHH
Q 011598 166 VGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNAD-RNGPKGIIS 244 (482)
Q Consensus 166 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~-k~ip~ai~~ 244 (482)
+..+.+.+......... ..+ .....+ ++..+ .+...++...+++|...+.....-.|+|||. |++-|....
T Consensus 163 ~~fv~~vv~~~~~~~~~-~~~--~~~~~~-~~~~~----~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~ 234 (411)
T KOG1305|consen 163 VYFVVLVVYKYFQGPCA-LGR--LSYLVP-NLSSF----SSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNI 234 (411)
T ss_pred HHHHHHHHHHHHhcccc-cCC--cccccC-Ccchh----hhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHH
Confidence 33333333322221110 000 011111 01111 3488899999999999999999999999995 789999999
Q ss_pred HHHHHHHHHHHHHHHHHhccC
Q 011598 245 AIGISIIFGWGYILGITFAVT 265 (482)
Q Consensus 245 ~~~~~~~~y~l~~~~~~~~~~ 265 (482)
+...+.++|......-....+
T Consensus 235 ~~~~~~~iy~~~g~~GYL~Fg 255 (411)
T KOG1305|consen 235 AIILATLIYLLTGLFGYLTFG 255 (411)
T ss_pred HHHHHHHHHHHHHHhhhheec
Confidence 999999999888776666553
No 75
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.35 E-value=0.18 Score=51.50 Aligned_cols=338 Identities=12% Similarity=0.017 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 35 VYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILL 114 (482)
Q Consensus 35 ~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (482)
+.+|.+-++..++.++.+..-.....-+...+.-..+..++. .|...=....++.....+........-+...+..
T Consensus 133 ~~~Wa~Y~~~~l~~ay~~y~k~~~~~~ss~l~pl~g~~~~g~----~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~ 208 (485)
T PF02028_consen 133 FHAWAIYALVGLAIAYFFYNKGKPLRISSALYPLLGDRINGP----LGKIIDILAIFATIFGVATSLGLGVPQISAGLSS 208 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS---SSGGGGCHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHheeeeecCCCCchhhhhhhhcCCcccCc----chhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445666777788888777764444433555555555442223 3444444444443333333333333333333333
Q ss_pred hcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-----c
Q 011598 115 STGGKNGGGYEASKYVVIAFHGGILLLHAIINSL----PISILSFFGQLAAAWNLVGVMVLMILIPSVSTERAS-----A 185 (482)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~----g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~-----~ 185 (482)
..+ ...+......+..++..++..-... |+|..+++|..+.+.-++.++++.=..+......+. +
T Consensus 209 ~~G------i~~~~~~~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~ 282 (485)
T PF02028_consen 209 LFG------IPNTFGLQIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQ 282 (485)
T ss_dssp HCT------SSSTHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HcC------CCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 211 2223333444444444444444444 555556666555555544443332111111110000 0
Q ss_pred cccceecccc--CCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 011598 186 KFVFTHFNSD--NGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFA 263 (482)
Q Consensus 186 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~ 263 (482)
++.-..+..+ ++++ +..+.+..+..+-|.=.+.-....+++=.| .|+++--+...++.-.+.-.+........
T Consensus 283 ~f~~~s~~t~~~~~~~---~w~~~WTvFYwaWWiawaPfvG~FiArISk--GRTIRE~il~~~~~psl~~~~wf~ifGg~ 357 (485)
T PF02028_consen 283 NFFRMSLWTDPFGNSG---QWPQDWTVFYWAWWIAWAPFVGLFIARISK--GRTIREFILGVLLVPSLFCFLWFSIFGGY 357 (485)
T ss_dssp HHHHHHT--TTTTTTT---HHHHHTHHHHHHHHHHTHHHHHHHHHHCTT--TSBHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccCcc---cccCCCHHHHHHHHHHHHHHHHHHHhhhcC--CcCHHHHHHHHHHhhHHHHHHHHHHHCch
Confidence 0000001110 0111 011122222222221122222334444444 58886555555444444332222222211
Q ss_pred cCCccccccCCCCC--CCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCC-CCCcccc
Q 011598 264 VTSIPNLLSEDNDA--GGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDG-AMPFSSF 340 (482)
Q Consensus 264 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg-~lP~~~~ 340 (482)
. =..+..+..+.. ......+.....+++. | +..++....++..+....+..-+.+..+-.++.+| .=|
T Consensus 358 a-l~~~~~g~~~~~~~~~~g~~~a~~~~l~~l---P-~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep---- 428 (485)
T PF02028_consen 358 A-LYLQLSGAGDLAAANEQGPEAALFAFLEQL---P-LSKILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEP---- 428 (485)
T ss_dssp H-HHHHHCTSS-HHHHHHH-HHHHHHHHHHTS---T-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS----
T ss_pred H-HhhHhhhhhhHHHHhhcchhhHHHHHHHHh---h-HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCC----
Confidence 1 011111110000 0011223444555554 2 56677888888888888888889999998888776 112
Q ss_pred ceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011598 341 WHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARK 403 (482)
Q Consensus 341 f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 403 (482)
..+.+..|....-.+...++..+..+..+.+..+..+-..+...+.+.+.+|.-||
T Consensus 429 -------~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~~ 484 (485)
T PF02028_consen 429 -------PRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALKE 484 (485)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -------chHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444433333333344467788888888888888888888888876544
No 76
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.24 Score=49.41 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011598 152 ILSFFGQLAAAWNLVGVMVLMILIPSVST 180 (482)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 180 (482)
-+.+++++...+.++..+.+....+...+
T Consensus 145 ~~r~~E~~v~~l~~~~~i~~~~~~~~~~p 173 (416)
T COG1914 145 GYRLLERVVLILGLVLVILFVYVAFVAPP 173 (416)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 56677777777777777777666665544
No 77
>PRK12488 acetate permease; Provisional
Probab=97.22 E-value=0.38 Score=50.51 Aligned_cols=96 Identities=8% Similarity=0.030 Sum_probs=50.0
Q ss_pred hhhhHHHhhcCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHH
Q 011598 64 GLYYWSAKLAGPKWA-PFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLH 142 (482)
Q Consensus 64 g~y~~~~~~~~~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 142 (482)
..+.|.++- || +....+.+....+.............+..+..++. .+.+...++..+ +..
T Consensus 131 T~~d~l~~R----f~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g------------i~~~~~iii~~~--i~~ 192 (549)
T PRK12488 131 TFADVVSYR----LAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG------------ISYLYAVVIVGA--LMV 192 (549)
T ss_pred chHHHHHHH----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------CCHHHHHHHHHH--HHH
Confidence 556666655 55 44666666665555444455445555455544431 122222222222 223
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011598 143 AIINSLPISILSFFGQLAAAWNLVGVMVLMILIPS 177 (482)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 177 (482)
.....-|.|...+.+.+=.++.+...+++.+..+.
T Consensus 193 ~Yt~~GGm~av~~td~iQ~~im~~~~i~~~~~~l~ 227 (549)
T PRK12488 193 LYVTFGGMLATTWVQIIKAVLLLSGTSFMAFMVLK 227 (549)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345588887777777776666665555444443
No 78
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.19 E-value=0.29 Score=48.60 Aligned_cols=122 Identities=13% Similarity=0.119 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHh
Q 011598 132 IAFHGGILLLHAIINSLPISI-LSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLG 210 (482)
Q Consensus 132 ~~i~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (482)
...-.+++.+..++-.+|++. .-|.+.++.-.-.+..+++.+-.+.. +......+....||-+...+ ...+..+
T Consensus 145 ~~~~~~~~~lt~~iv~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tL----pGA~~G~~f~l~PD~s~l~~-~~v~~~A 219 (439)
T COG0733 145 VIFHLLFLVLTALIVSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTL----PGAMEGLKFLFKPDFSKLTD-PKVWLAA 219 (439)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcC----ccHHHHHHHHhcCCHHHcCc-hhhHHHH
Confidence 333455666677778888876 44555555444444444333333321 11111233333333332331 3448888
Q ss_pred hHhHhHhh-hcccccchhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Q 011598 211 LLMSQYTL-TGYDASAHMTEETKNADRNGPKGIISAIGISIIFGWGYILG 259 (482)
Q Consensus 211 ~~~~~~a~-~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~ 259 (482)
+..++|+. .|+.....+++-.++ |.|+++.-......-..+-++..+.
T Consensus 220 lGQ~FFsLSlG~g~mitYsSYL~k-~~~l~~sa~~v~~~n~~~s~lAGl~ 268 (439)
T COG0733 220 LGQAFFSLSLGFGIMITYSSYLSK-KSDLVSSALSIVLLNTLISLLAGLV 268 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCc-ccchhhhHHHHHHHHHHHHHHHHHH
Confidence 88899988 688888888888776 7888887766665555544444433
No 79
>PRK09395 actP acetate permease; Provisional
Probab=97.01 E-value=0.6 Score=49.05 Aligned_cols=93 Identities=9% Similarity=-0.018 Sum_probs=46.2
Q ss_pred hhhhHHHhhcCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHH
Q 011598 64 GLYYWSAKLAGPKWA-PFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLH 142 (482)
Q Consensus 64 g~y~~~~~~~~~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 142 (482)
..+.|.++- || +....+.+....+.............+..+..+++ .+.+...++. .++..
T Consensus 133 T~~d~l~~R----ygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g------------i~~~~~ili~--~~i~~ 194 (551)
T PRK09395 133 TFADVASYR----LKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG------------LNYHVAVVLV--GVLMM 194 (551)
T ss_pred cHHHHHHHH----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------CCHHHHHHHH--HHHHH
Confidence 344455455 66 44667766665555444444444444444444321 1222222222 22333
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 143 AIINSLPISILSFFGQLAAAWNLVGVMVLMIL 174 (482)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~ 174 (482)
.....-|.|...+.+.+=.++.++..+++.+.
T Consensus 195 iYt~~GGm~av~~TD~iQ~iim~~g~ii~~~~ 226 (551)
T PRK09395 195 VYVLFGGMLATTWVQIIKAVLLLSGATFMAFM 226 (551)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445588887777776666666555444443
No 80
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=96.98 E-value=0.53 Score=48.02 Aligned_cols=76 Identities=8% Similarity=0.015 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 33 SLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVII 112 (482)
Q Consensus 33 ~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (482)
.++++.+++.++........+..+.+.-. ......|.. ||..-+.+.....++......+..+...++.+..++
T Consensus 48 ~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~sR~~----FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l 121 (442)
T TIGR00800 48 QSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVLSRAS----FGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALML 121 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchhhhhh----hhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35666666665555555555555555432 567788888 776677777777776666666777777777666665
Q ss_pred HH
Q 011598 113 LL 114 (482)
Q Consensus 113 ~~ 114 (482)
..
T Consensus 122 ~~ 123 (442)
T TIGR00800 122 DS 123 (442)
T ss_pred HH
Confidence 44
No 81
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=96.95 E-value=0.14 Score=52.34 Aligned_cols=223 Identities=14% Similarity=0.064 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc------cccceeccccCCCCCCcch
Q 011598 131 VIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASA------KFVFTHFNSDNGDGINSKV 204 (482)
Q Consensus 131 ~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 204 (482)
...+++++++..+.+.-+|.+..++. ++-+.++=.+.+...|+.....++.. .+..+-+.+ +++
T Consensus 132 Vv~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~---~~~---- 201 (534)
T PF02705_consen 132 VVPITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIR---NGW---- 201 (534)
T ss_pred ehhHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHH---cCC----
Confidence 45667788888899999998877765 44444444444444444432222111 011111111 111
Q ss_pred hhHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHHHHHHHH-HHHHHHHHHHhccCCccccccCCCCCCCCcHH
Q 011598 205 YIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIGISII-FGWGYILGITFAVTSIPNLLSEDNDAGGYAIA 283 (482)
Q Consensus 205 ~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~-~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (482)
.-+..+...+.+.+|-|+.-. +-=+-.||++.++-..-+.-+.+ .|+- .- ..+.+.. ....
T Consensus 202 -~~~~~LG~V~L~~TGaEALyA--DmGHfg~~~Ir~aw~~~V~PaL~LnY~G-Qg---------A~ll~~p-----~~~~ 263 (534)
T PF02705_consen 202 -IGFFVLGAVFLCVTGAEALYA--DMGHFGRKPIRIAWFFLVFPALLLNYFG-QG---------ALLLSHP-----EAVS 263 (534)
T ss_pred -chhhhcchHHHHHhhHHHHHh--hhccccchhhhhhHHHHHHHHHHHHHcc-HH---------HHHHcCc-----chhh
Confidence 123344456667899997532 22233456676665542221111 1111 11 1122221 1122
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCccccceecCCC-----CchHHHHHHHH
Q 011598 284 EIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQ-----DIPINAVWLSA 358 (482)
Q Consensus 284 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~-----~~P~~ai~~~~ 358 (482)
++++....+. +.+-+.+...+++.-+..+.+.++--+..+..+-|.+|.-|. .|.+++ -.|...-++..
T Consensus 264 npFf~~~P~~-----~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I-~hTS~~~~GQIYIP~vNw~L~i 337 (534)
T PF02705_consen 264 NPFFLLIPEW-----LLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKI-VHTSEKEEGQIYIPEVNWLLMI 337 (534)
T ss_pred hHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEE-EECCcccCCcEechHHHHHHHH
Confidence 4555554332 444444544445444455555666667777778899992222 222222 25655433332
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 011598 359 FISFCMALTYLGSAVAFQAMVSIATIGLYIA 389 (482)
Q Consensus 359 ~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~ 389 (482)
. ++...+...+.+....-..++..+.+..
T Consensus 338 ~--~i~vvl~F~~S~~la~AYGiAVt~tM~i 366 (534)
T PF02705_consen 338 G--VIAVVLGFRSSSNLAAAYGIAVTGTMLI 366 (534)
T ss_pred H--HHhhheEECChHHHHHHHHHHHHHHHHH
Confidence 2 2222223445555555555555444443
No 82
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=96.90 E-value=0.68 Score=47.89 Aligned_cols=31 Identities=16% Similarity=-0.030 Sum_probs=21.9
Q ss_pred CCchhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011598 296 SGVGGIVCLGVVAVAIFFCGMSSVTSNSRMA 326 (482)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 326 (482)
+++..-++...++.+..++..+.+.+.+-.+
T Consensus 316 p~~l~gl~~a~ilaA~mST~~s~l~s~ss~~ 346 (487)
T TIGR02121 316 HPWIAGILLAAILAAIMSTISSQLLVSSSAL 346 (487)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777778888888888877776554
No 83
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.87 E-value=0.78 Score=48.16 Aligned_cols=106 Identities=9% Similarity=-0.036 Sum_probs=49.5
Q ss_pred HHHHHHhhhhcCCCChhhhHHHhhcCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Q 011598 49 GSSMAEICSSYPTSGGLYYWSAKLAGPKWA-PFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEAS 127 (482)
Q Consensus 49 a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (482)
.+.++|--++.- .=....|.++- |+ +....+.+....+.............+..+..+++ .+
T Consensus 117 ~~~~a~~lrr~g-~~T~~d~l~~R----f~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g------------i~ 179 (549)
T TIGR02711 117 LFLIAERLRNLG-RYTFADVASYR----LKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG------------LN 179 (549)
T ss_pred HHHHHHHHHHcC-CccHHHHHHHH----cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CC
Confidence 344555444432 12444555544 54 44566655544444333344444444444444321 12
Q ss_pred hhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 011598 128 KYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMI 173 (482)
Q Consensus 128 ~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i 173 (482)
.+...++..+ +.....-.-|.|...+.+.+=.++.++..+++.+
T Consensus 180 ~~~~iii~~~--i~~~Yt~~GGm~av~~td~iQ~~im~~g~i~~~~ 223 (549)
T TIGR02711 180 YHVAVVLVGI--LMVMYVLFGGMLATTWVQIIKAVLLLFGATFMAF 223 (549)
T ss_pred HHHHHHHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 2233344557877777777766666655554443
No 84
>PRK09950 putative transporter; Provisional
Probab=96.82 E-value=0.74 Score=47.22 Aligned_cols=107 Identities=7% Similarity=0.115 Sum_probs=63.9
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHH
Q 011598 286 FYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMA 365 (482)
Q Consensus 286 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~ 365 (482)
....+++. | +..+.....++..+....+..-+++-.+-.++.+|.=+ + .||+ ...+..|....-.+...
T Consensus 391 ~~~~l~~l---P-~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~--~----~~P~-~~~ri~W~i~~g~ia~~ 459 (506)
T PRK09950 391 VQQLLSSL---P-AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLRE--G----DDPD-RGLRLFWCVVITLIPLS 459 (506)
T ss_pred HHHHHHhC---c-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCC--C----CCCC-cchhHHHHHHHHHHHHH
Confidence 33455444 2 66677788888888888888888888888887766433 1 1111 12223333322222222
Q ss_pred Hhhhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011598 366 LTYLGS-AVAFQAMVSIATIGLYIAYALPIFFRVTLARK 403 (482)
Q Consensus 366 ~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 403 (482)
++..+. .+..+....+..+-..+...+.+.+..|.-|+
T Consensus 460 Ll~~gG~l~~lQ~~~ii~alP~~~i~~l~~~s~~k~l~~ 498 (506)
T PRK09950 460 ILFTGASLDTMKTTVVLTALPFLVILLIKVYGFIRWLKQ 498 (506)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222333 56677777777777777777777777765443
No 85
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=96.70 E-value=0.81 Score=45.93 Aligned_cols=246 Identities=11% Similarity=0.065 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--c-ccccceeccccCCCCCCcchhh
Q 011598 130 VVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERA--S-AKFVFTHFNSDNGDGINSKVYI 206 (482)
Q Consensus 130 ~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~ 206 (482)
...+.++++..+...+.++.-|..-++.++++-..++.++++++.++.+..+.. + +.+.-+++. +|+.. +++
T Consensus 121 ~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~----~Gf~e-GY~ 195 (439)
T PRK15433 121 PLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFS----NGFVN-GYL 195 (439)
T ss_pred HHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHH----HHHHh-hHH
Confidence 445667778888889999999999999999999999999999988888643221 1 111111111 12332 233
Q ss_pred HHHhhHhHhHhhhcccccchhhhhccccc---cccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHH
Q 011598 207 FVLGLLMSQYTLTGYDASAHMTEETKNAD---RNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIA 283 (482)
Q Consensus 207 ~~~~~~~~~~a~~G~e~~~~~~~E~k~P~---k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (482)
..-++....|+..=.++ --....||+| |..-++-.++.+...++|......-.... +...+.+ +.++-..
T Consensus 196 TMDalaal~Fg~iii~~--i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~---~~~~~~~--~g~~il~ 268 (439)
T PRK15433 196 TMDTLGAMVFGIVIVNA--ARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSA---SLVDQSA--NGAAILH 268 (439)
T ss_pred HHHHHHHHHHHHHHHHH--HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccccCCC--cHhHHHH
Confidence 33333333333221122 1222344432 33334444444444455544433322211 1111110 1111111
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCccccceecCCCCchH-HHHHHHHHHHH
Q 011598 284 EIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPI-NAVWLSAFISF 362 (482)
Q Consensus 284 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~-~ai~~~~~i~~ 362 (482)
....+.+|+. ...+..+.+.++++.+......+.++...+.-+ .|+ ....+..+++.
T Consensus 269 ~~~~~~~G~~-----G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-----------------isY~~~v~i~~l~S~ 326 (439)
T PRK15433 269 AYVQHTFGGG-----GSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-----------------LSYRTLVFILGGFSM 326 (439)
T ss_pred HHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------------CcHHHHHHHHHHHHH
Confidence 2233344443 788999999999999999999988887655321 122 22333333333
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccc
Q 011598 363 CMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARKSFIPGPFNL 412 (482)
Q Consensus 363 i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 412 (482)
++.- .+.++.......+-...+-..-.++.......+.+ +.++.||.
T Consensus 327 ~lSn--~G~~~II~~s~PiL~~iYP~~IvLill~l~~~~~~-~~~~~y~~ 373 (439)
T PRK15433 327 VVSN--LGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWH-NSSRVIAP 373 (439)
T ss_pred HHHH--hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCceehH
Confidence 3332 33344455555555566666655566555543222 22455654
No 86
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=96.66 E-value=1.1 Score=47.09 Aligned_cols=103 Identities=4% Similarity=-0.101 Sum_probs=51.2
Q ss_pred HHHHHHHHhhhhcCCCChhhhHHHhhcCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q 011598 47 FVGSSMAEICSSYPTSGGLYYWSAKLAGPKWA-PFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYE 125 (482)
Q Consensus 47 ~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (482)
..++.+++.-++.. .-..+.|.++- || +......+....+......+......+..+..+.+
T Consensus 80 ~~~~~~~p~~rr~~-~~T~~e~l~~R----f~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g------------ 142 (552)
T TIGR03648 80 LLALLLAPYLRKFG-KYTVPDFIGDR----YYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE------------ 142 (552)
T ss_pred HHHHHHHHHHHHCC-CccHHHHHHHH----hCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
Confidence 34566666666653 34788888888 55 33455555554444444444444444444444331
Q ss_pred cchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 011598 126 ASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGV 168 (482)
Q Consensus 126 ~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 168 (482)
.+.+...++..+ +.......-|.|...+...+=.++.++..
T Consensus 143 i~~~~~iii~~~--i~~iYt~~GG~~aV~~TD~iQ~iim~ig~ 183 (552)
T TIGR03648 143 VDFETGVFIGMA--IVFFYAVLGGMKGVTWTQVAQYIVLIVAY 183 (552)
T ss_pred CCHHHHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 122222322222 22333334477777666555555554443
No 87
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=96.36 E-value=1.6 Score=45.36 Aligned_cols=31 Identities=10% Similarity=-0.075 Sum_probs=21.8
Q ss_pred CCchhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011598 296 SGVGGIVCLGVVAVAIFFCGMSSVTSNSRMA 326 (482)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 326 (482)
++++.-++...++.+.+++..+.+.+.+-.+
T Consensus 323 p~~l~gl~~a~ilAA~mST~~s~l~a~ss~~ 353 (502)
T PRK15419 323 NPWIAGILLSAILAAVMSTLSCQLLVCSSAI 353 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777778888888888877776543
No 88
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.32 E-value=1.3 Score=44.16 Aligned_cols=122 Identities=11% Similarity=0.064 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhh-HHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 35 VYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYY-WSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIIL 113 (482)
Q Consensus 35 ~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (482)
.++|..+- ....+..+|-=+.+-+- ..-+ +..|. -.+....+.+..-.+.............+..+..++.
T Consensus 80 ~iG~~~Gy---~i~~fL~A~~LRk~Gky-T~aD~~a~Ry----~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g 151 (529)
T COG4147 80 SIGWTGGY---PILLFLIAEYLRKLGKY-TFADFIADRY----KSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG 151 (529)
T ss_pred HHHHHHHH---HHHHHHHHHHHHhcCCc-chHHHHHHHH----hcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence 34444443 33556667766666331 1222 23333 2233555555544444444444444555455554432
Q ss_pred HhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011598 114 LSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSV 178 (482)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 178 (482)
. + ....+.++.++.+...-+-|.|...+.|.+=.++.+...++..+....+
T Consensus 152 v------------~--~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~ 202 (529)
T COG4147 152 V------------P--YHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWK 202 (529)
T ss_pred C------------C--ceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1111222333334444455666666666555555555444444443333
No 89
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=96.22 E-value=1.5 Score=43.75 Aligned_cols=197 Identities=13% Similarity=0.032 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 33 SLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVII 112 (482)
Q Consensus 33 ~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (482)
.++++.+++.++........+..+.+... ......|.. ||+.-+.+......+......+..+...++.+..+.
T Consensus 30 ~ai~aiilG~~i~~~~~~l~~~~G~~~Gl--~~~v~sR~~----FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~ 103 (386)
T TIGR02358 30 RGLLAILLGHLVGVLLLSAAGVIGADTGL--SAMGSLKLS----LGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLG 103 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCc--CHHHHHHHH----HccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677766555555555555555432 578888999 666667777777666666667777777777777766
Q ss_pred HHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccceec
Q 011598 113 LLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHF 192 (482)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 192 (482)
.... + . .+... ...+..++.......|.|...+++++...+..+..+........+.+ ... ..+
T Consensus 104 ~~~~----~--~-~~~~~---~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~--~~~-- 167 (386)
T TIGR02358 104 GRLF----G--E-ESPML---WILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKAD--LSE--LWN-- 167 (386)
T ss_pred HHhc----C--C-CchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hhh--hcC--
Confidence 4310 1 0 11111 11223334566677899999999998888776666555444333221 111 011
Q ss_pred cccCCCCCCcchhhHHHhhHhHhHh-hhcccccchhhhhccccccccchHHHHHHHHHHHHHHHHHHHH
Q 011598 193 NSDNGDGINSKVYIFVLGLLMSQYT-LTGYDASAHMTEETKNADRNGPKGIISAIGISIIFGWGYILGI 260 (482)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~a-~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~ 260 (482)
++ .+ .++..+.....-. -.+....+.+++..|+| |+.-++..++..+...+..+.....
T Consensus 168 -~~-~~------~s~~~~~~~~~~~~~swa~~~~DysRy~k~~-~~~~~~~~~G~~i~~~~~~~~G~~~ 227 (386)
T TIGR02358 168 -RA-GD------MSFAVAVELVIAMPLSWLPLIADYTRFARNP-RHVFLGTVLGYFIGSCWMYFLGLAV 227 (386)
T ss_pred -CC-CC------ccHHHHHHHHHHHHHHHHHHccchhhhcCCC-cceehHHHHHHHHHHHHHHHHHHHH
Confidence 11 11 1122222111111 11222367778888875 5555677766555555444444433
No 90
>PRK10484 putative transporter; Provisional
Probab=96.22 E-value=1.9 Score=44.96 Aligned_cols=29 Identities=17% Similarity=-0.156 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011598 298 VGGIVCLGVVAVAIFFCGMSSVTSNSRMA 326 (482)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 326 (482)
++.-++...++.+.+++..+.+.+.+-.+
T Consensus 327 ~l~Gl~~a~ilAA~mST~~s~l~s~st~~ 355 (523)
T PRK10484 327 PLVGFFAAVLFGAILSTFNGFLNSASTLF 355 (523)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777777778777777666554
No 91
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=95.96 E-value=2.2 Score=43.27 Aligned_cols=107 Identities=14% Similarity=0.107 Sum_probs=60.8
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHH
Q 011598 285 IFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCM 364 (482)
Q Consensus 285 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~ 364 (482)
...+.+++. | +..++....++..+....+..-+.+-.+-.++.++.-+ +- +.+++..=.+++.+ ++++..+
T Consensus 344 a~~~~l~~l---P-~~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~--~~--ep~~~~ri~W~v~i-g~~a~~l 414 (453)
T TIGR00842 344 ALFGLLQAL---P-LGTITSALALIVIIIFFITSADSGALVLANTSSRGGQL--GE--EPPKWVRVFWAVAI-GLIALVL 414 (453)
T ss_pred HHHHHHHHC---c-HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCC--CC--CCCcccchHHHHHH-HHHHHHH
Confidence 334555544 2 56677777777777777888888888888774433222 00 11111112233333 2222222
Q ss_pred HHhhhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011598 365 ALTYLGS-AVAFQAMVSIATIGLYIAYALPIFFRVTLAR 402 (482)
Q Consensus 365 ~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 402 (482)
.. .+. -+..+....+...-..+...+.+.+.+|.-|
T Consensus 415 l~--~gG~l~~lQ~~~ii~alP~~~i~~l~~~sl~k~l~ 451 (453)
T TIGR00842 415 LF--SGGSLAALQTTAIIAALPFSLVMLVVMASLIKDLK 451 (453)
T ss_pred HH--hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 333 5677777777888888888888888776543
No 92
>PRK09928 choline transport protein BetT; Provisional
Probab=95.85 E-value=3.1 Score=44.14 Aligned_cols=103 Identities=12% Similarity=0.041 Sum_probs=60.2
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCc--cccceecCCCCchHHHHHHHHHHHH
Q 011598 285 IFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPF--SSFWHEVNSQDIPINAVWLSAFISF 362 (482)
Q Consensus 285 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~--~~~f~~~~~~~~P~~ai~~~~~i~~ 362 (482)
..+..++.. | +..+..+..++..+....+..-+.+-++-.++.+|.-|. ++...| =.+++.+.. ++.
T Consensus 397 alf~~l~~l---P-~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~R------ifW~v~ig~-la~ 465 (679)
T PRK09928 397 GFYSLLAQY---P-AFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLR------VFWSVAIGL-LTL 465 (679)
T ss_pred HHHHHHHhC---c-HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCccee------eHHHHHHHH-HHH
Confidence 334555444 2 566777777777777778888888888888887664330 022222 223333222 222
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011598 363 CMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTL 400 (482)
Q Consensus 363 i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 400 (482)
.++ ..+..+..+...-+..+-..+...+.+.+.+|.
T Consensus 466 ~LL--~~GGL~aLQt~sii~alPf~~I~ll~~~sl~k~ 501 (679)
T PRK09928 466 GML--MTNGISALQNTTVIMGLPFSFVIFFVMAGLYKS 501 (679)
T ss_pred HHH--HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 233456677777777777777777777777665
No 93
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=95.63 E-value=2.9 Score=42.53 Aligned_cols=129 Identities=11% Similarity=0.017 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 33 SLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVII 112 (482)
Q Consensus 33 ~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (482)
.++++.+++.++........+.++.+.- =......|.. ||..-+.+......+......+......++.+..+.
T Consensus 43 ~ailai~~G~~l~~i~~~~~~~~G~r~G--l~~~v~sR~~----FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~ 116 (440)
T PF02133_consen 43 QAILAILIGNLLGAILVALMGIIGPRTG--LPTMVLSRAS----FGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALL 116 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCC-----HHHHTTTT----S-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccC--CCchhcchhc----cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666654444444455554442 2567777777 777677777777666666666777777777777776
Q ss_pred HHhcCCCCCC-Ccc-----cchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 011598 113 LLSTGGKNGG-GYE-----ASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVL 171 (482)
Q Consensus 113 ~~~~~~~~~~-~~~-----~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~ 171 (482)
.. ..+. ... .......+..++.-++.......|.|...+++.+...+.....+..
T Consensus 117 ~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~ 177 (440)
T PF02133_consen 117 GI----IFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKALRRLAVIAAPILLVVFIGM 177 (440)
T ss_dssp HC----CC-----HH-----------HHHHHHHHHHHHHHCTHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hh----hcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHHHhHHhhhhHHHHhhhhhe
Confidence 53 1110 000 0111122222233344555677888888888777766554443333
No 94
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=95.48 E-value=3.6 Score=42.30 Aligned_cols=107 Identities=8% Similarity=0.034 Sum_probs=63.4
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHH
Q 011598 286 FYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMA 365 (482)
Q Consensus 286 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~ 365 (482)
....+++. | +..+.....++..+....+..-+++-.+-.++.+|.=+ + .||+ ...+..|....-.+...
T Consensus 394 lf~~l~~l---P-l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~--~----~~p~-~~~ri~W~v~ig~ia~~ 462 (504)
T PRK03356 394 IIETWAAL---P-LSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRD--G----EEPP-LLVRIGWSILVGIIGIV 462 (504)
T ss_pred HHHHHHHC---c-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCC--C----CCCC-cchhhHHHHHHHHHHHH
Confidence 34455444 2 56677777777777778888888888888888776422 1 1221 12223333222222222
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011598 366 LTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTLARK 403 (482)
Q Consensus 366 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 403 (482)
++..+..+..+....+..+-..+...+.+.+..|.-|+
T Consensus 463 Ll~~GGl~~lQt~sii~alPf~~i~~l~~~sl~k~l~~ 500 (504)
T PRK03356 463 LLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQ 500 (504)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22233456677777777777777777777777766544
No 95
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=95.40 E-value=0.38 Score=50.19 Aligned_cols=109 Identities=9% Similarity=-0.025 Sum_probs=60.4
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhh-hc
Q 011598 142 HAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTL-TG 220 (482)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~G 220 (482)
......+|+|..+|+.......-.+.++++.+-++-..+. ..+.+.+.+||-+.+.+ ..-+..++..++|+. .|
T Consensus 191 v~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga----~~Gl~~~~~pd~~~l~~-~~vW~~A~~Q~ffsl~ig 265 (523)
T PF00209_consen 191 VFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGA----SEGLKFLFTPDWSKLLD-PKVWIAALGQVFFSLSIG 265 (523)
T ss_dssp HTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEH----HHHHHHHHSB-TTGTTS-HHHHHHHHHHHHHHTTTT
T ss_pred HHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCC----CCceEEEecCCcchhhH-HHHHHHHHHHHhhccCCC
Confidence 3444568999999887776655544444444443322211 11122233333222322 344777888898888 68
Q ss_pred ccccchhhhhccccccccchHHHHHHHHHHHHHHHH
Q 011598 221 YDASAHMTEETKNADRNGPKGIISAIGISIIFGWGY 256 (482)
Q Consensus 221 ~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~ 256 (482)
+-....+++-.|+ ++|++|........-....++.
T Consensus 266 ~G~~it~~Sy~~~-~~n~~~~a~~v~~~~~~~slla 300 (523)
T PF00209_consen 266 FGIMITYGSYNKF-KNNIFRDALIVAFINTLVSLLA 300 (523)
T ss_dssp SSHHHHHHTTS-T-TS-SHHHHHHHHHHHHHHHHTT
T ss_pred cceEEEEcCcCCC-CccccccceEEEcCchhhhHhH
Confidence 8888888888877 6788886665555554444443
No 96
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=95.18 E-value=0.093 Score=55.17 Aligned_cols=173 Identities=14% Similarity=0.081 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc-------cccceeccccCCCCCCc
Q 011598 130 VVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASA-------KFVFTHFNSDNGDGINS 202 (482)
Q Consensus 130 ~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 202 (482)
....+++++++..+.+.-+|....++. ++-++++=.+.+.+.|+......++. .+..+-+.. ++..
T Consensus 167 ~Vv~it~~ILv~LF~iQ~~GT~kvg~~---FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~---~~~~- 239 (688)
T TIGR00794 167 WVVPISCIILVLLFLIQRFGTAKVGFT---FAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIE---YGTV- 239 (688)
T ss_pred eehhHHHHHHHHHHHHhccccHHHhhh---hhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHH---CCCc-
Confidence 345677888888999999998866665 44444444444444444332220111 111111111 1111
Q ss_pred chhhHHHhhHhHhHhhhccccc-chhhhhccccccccchHHHHHHHHHH-HHHHHHHHHHHhccCCccccccCCCCCCCC
Q 011598 203 KVYIFVLGLLMSQYTLTGYDAS-AHMTEETKNADRNGPKGIISAIGISI-IFGWGYILGITFAVTSIPNLLSEDNDAGGY 280 (482)
Q Consensus 203 ~~~~~~~~~~~~~~a~~G~e~~-~~~~~E~k~P~k~ip~ai~~~~~~~~-~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (482)
-+..+..++.+.+|-|+. +.++ +=.||.+.+|-..-+.-+. +.|+- .-++... ++++.
T Consensus 240 ----~~~~LG~V~L~iTGaEALyADmG---HFg~~~Ir~aw~~~V~P~L~LnY~G-QgA~ll~--~p~~~---------- 299 (688)
T TIGR00794 240 ----GWVSLGGVVLSITGVEAMFADLG---HFGKLPIQLAWFTFVYPSLILCYIG-QAAYLSK--HPEAI---------- 299 (688)
T ss_pred ----eeeeccchhheeccHhhhhcccC---CCCcccceeehHHHHHHHHHHHHcc-hHHHHhc--Ccchh----------
Confidence 222344455678898875 2222 3335666655442222111 11221 1111111 11111
Q ss_pred cHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCC
Q 011598 281 AIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMP 336 (482)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP 336 (482)
.++|+....+ |+.+-+.+...+++.-+..+.+.++-.+..+.-+-|.+|
T Consensus 300 --~NpFf~~~P~-----~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~P 348 (688)
T TIGR00794 300 --KNPFFLSIPD-----WALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFP 348 (688)
T ss_pred --cCcHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 1333444322 344444454444444444555556666677777889999
No 97
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=94.61 E-value=4.7 Score=39.11 Aligned_cols=171 Identities=15% Similarity=0.106 Sum_probs=82.2
Q ss_pred HhHhhhcccccchhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCC
Q 011598 214 SQYTLTGYDASAHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNR 293 (482)
Q Consensus 214 ~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (482)
.++...|.-....-.-.-|| .|.+.++++++.+++.++-+..-+.-.....-.+++...| ..++....+.+.
T Consensus 244 v~~gvlglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~~D-----~Vip~lalkvlp-- 315 (473)
T COG4145 244 VCFGVLGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTVVD-----LVIPTLALKVLP-- 315 (473)
T ss_pred HHHHHhcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCccc-----hhHHHHHHHhcc--
Confidence 34445565555555555688 6899999999988877754433322221110112232233 333344434331
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHH
Q 011598 294 FGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAV 373 (482)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~ 373 (482)
|...-++......+.+++.++...-.+-.+- ||=.+- .+=.+.|+|+.-..+...+..+..+..+....+.+
T Consensus 316 ---p~~agifl~apmaAiMSTIds~L~~~sstli---KdLy~~--~~~~~~~E~ki~~is~~~t~i~~~l~~i~al~Pp~ 387 (473)
T COG4145 316 ---PFAAGIFLAAPMAAIMSTINSQLLQSSSTLI---KDLYLN--VRDKLKNERKIKRISMIATLIFGALLLIAALNPPE 387 (473)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 2133344455556666677766543333221 222222 11123344455555555566666655544455545
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011598 374 AFQAMVSIATIGLYIAYALPIFFRVTL 400 (482)
Q Consensus 374 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 400 (482)
...++.-++--+.-..++.+.+..+..
T Consensus 388 ~iiwlnlfAfggle~~Fl~plvlgLYw 414 (473)
T COG4145 388 MIIWLNLFAFGGLEAVFLWPLVLGLYW 414 (473)
T ss_pred eeeeeehhhhcchhhHHHHHHHHHHHh
Confidence 444443333333334455555555544
No 98
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=93.90 E-value=0.43 Score=49.55 Aligned_cols=173 Identities=12% Similarity=0.076 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc------cccceeccccCCCCCCcch
Q 011598 131 VIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASA------KFVFTHFNSDNGDGINSKV 204 (482)
Q Consensus 131 ~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 204 (482)
...+++++++..+.+.-+|....++. ++-++++=.+.+.+.|+.....++.. .+..+-+.+ ++..
T Consensus 143 Vvpit~~ILv~LF~iQ~~GT~~vG~~---FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~---~~~~--- 213 (622)
T PRK10745 143 IVPLSIIVLTLLFMIQKHGTGMVGKL---FAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFFLE---YKTV--- 213 (622)
T ss_pred cHHHHHHHHHHHHHHhccccHHHhhh---hhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHh---CCCc---
Confidence 45678888888899999998876665 44444444444444444332221111 011111111 1111
Q ss_pred hhHHHhhHhHhHhhhcccccchhhhhccccccccchHHHHHHH-HHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHH
Q 011598 205 YIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKGIISAIG-ISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIA 283 (482)
Q Consensus 205 ~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~ai~~~~~-~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (482)
-+..+...+.+.+|-|+. +++-=+-.||.+.+|-..-+. ...+.|+- .-+.... +++.. .
T Consensus 214 --gf~~LG~V~L~vTGaEAL--YADmGHFG~~~Ir~aW~~~v~P~L~LnY~G-QgA~ll~--~p~~~------------~ 274 (622)
T PRK10745 214 --SFFALGAVVLAITGVEAL--YADMGHFGKFPIRLAWFTVVLPSLVLNYFG-QGALLLK--NPEAI------------K 274 (622)
T ss_pred --eEEEecceeeeccchHHH--hhccCCCCccceeeeehhhHHHHHHHHhcc-hHHHHhc--Cchhh------------c
Confidence 222334455667888864 222223345667666543332 22222222 1111110 11111 1
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCC
Q 011598 284 EIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMP 336 (482)
Q Consensus 284 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP 336 (482)
++|+....+ ++.+-+.+...+++.-+..+.+.++-.+..+.-+-|.+|
T Consensus 275 NpFf~~~P~-----~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~P 322 (622)
T PRK10745 275 NPFFLLAPD-----WALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLP 322 (622)
T ss_pred CcHHHhCCh-----hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCC
Confidence 233444322 244444444444444444445555556667777889999
No 99
>PLN00151 potassium transporter; Provisional
Probab=93.80 E-value=0.46 Score=50.70 Aligned_cols=178 Identities=12% Similarity=0.048 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhccccc----ccccccceeccccCCCCCCcchh
Q 011598 130 VVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTER----ASAKFVFTHFNSDNGDGINSKVY 205 (482)
Q Consensus 130 ~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 205 (482)
....+++++++..+.+.-+|....++.-.-..++=++.+..+.+..++..... -+..+..+-+.. ++..
T Consensus 273 ~VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~---~~~~---- 345 (852)
T PLN00151 273 AVVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKR---NSTK---- 345 (852)
T ss_pred eehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHh---CCCc----
Confidence 34567888888999999999887776533333333333333333333322100 000111111111 1111
Q ss_pred hHHHhhHhHhHhhhccccc-chhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHH
Q 011598 206 IFVLGLLMSQYTLTGYDAS-AHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAE 284 (482)
Q Consensus 206 ~~~~~~~~~~~a~~G~e~~-~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (482)
-+..+..++.+.+|-|+. +.++ .-.+|.+.+|-..-+.=+.++.=...-++ +.... ....+
T Consensus 346 -gw~~LGgVvLciTGaEALfADLG---HFg~~sIqiaw~~~V~P~LlL~Y~GQaA~---------L~~~p-----~~~~n 407 (852)
T PLN00151 346 -AWSALGGCVLCATGSEAMFADLG---YFSVRSIQLAFTCLVLPCLLLAYMGQAAY---------LMKNP-----DSAEQ 407 (852)
T ss_pred -eEEEecceeeeeccchhhhcccC---CCCccceeeeehhhHHHHHHHHHcchHHH---------HhcCc-----ccccC
Confidence 122334455568898875 2232 33345565554432222222111111111 11111 11113
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCc
Q 011598 285 IFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPF 337 (482)
Q Consensus 285 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~ 337 (482)
+|+....+ ++.+-+.+.+.+++.-+..+.+.++--++.+.-+-|.+|.
T Consensus 408 pFy~svP~-----~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPR 455 (852)
T PLN00151 408 IFFSSVPS-----SLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPR 455 (852)
T ss_pred cHHHhCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34444433 2455445555555555555555555566666667799993
No 100
>PLN00148 potassium transporter; Provisional
Probab=93.75 E-value=0.63 Score=49.60 Aligned_cols=174 Identities=12% Similarity=0.068 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc-------cccceeccccCCCCCCc
Q 011598 130 VVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASA-------KFVFTHFNSDNGDGINS 202 (482)
Q Consensus 130 ~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 202 (482)
....+++++++..+.+.-+|....++. ++-+.++=.+.+...|+......++. .+..+-+.. ++..
T Consensus 196 ~vv~is~~ILv~LF~vQ~~GT~kVg~~---FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~---~~~~- 268 (785)
T PLN00148 196 ELVLLACVILVGLFALQHCGTHRVAFM---FAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRV---TGKD- 268 (785)
T ss_pred eehhHHHHHHHHHHHHhccccHHHHhh---hhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHh---CCCc-
Confidence 345678888888999999998876665 44444433333333443322111111 111111111 1111
Q ss_pred chhhHHHhhHhHhHhhhccccc-chhhhhccccccccchHHHHHHHHHHH-HHHHHHHHHHhccCCccccccCCCCCCCC
Q 011598 203 KVYIFVLGLLMSQYTLTGYDAS-AHMTEETKNADRNGPKGIISAIGISII-FGWGYILGITFAVTSIPNLLSEDNDAGGY 280 (482)
Q Consensus 203 ~~~~~~~~~~~~~~a~~G~e~~-~~~~~E~k~P~k~ip~ai~~~~~~~~~-~y~l~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (482)
-+..+..++.+.+|-|+. +.++ +-.+|.+.+|-..-+.=+.+ -|+ ..-++..- ++++
T Consensus 269 ----g~~~LGgV~L~iTGaEALyADlG---HFg~~~Iriaw~~~V~P~L~L~Y~-GQaA~ll~--~p~~----------- 327 (785)
T PLN00148 269 ----GWISLGGILLSITGTEAMFADLG---HFTAASIRLAFATVIYPCLVVQYM-GQAAFLSK--NIPS----------- 327 (785)
T ss_pred ----eEEeecchheeccchhhhhhhcc---CCCccceEEeeeehHHHHHHHHHc-chHHHHhc--Cccc-----------
Confidence 122344455568898875 3332 33345565554432221111 121 11111111 1111
Q ss_pred cHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCc
Q 011598 281 AIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPF 337 (482)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~ 337 (482)
..++|+....+ +..+-+.+.+.+++.-+..+.+.++--+..+.-+-|.+|.
T Consensus 328 -~~npFf~~iP~-----~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPr 378 (785)
T PLN00148 328 -IPNSFYDSIPD-----PVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPR 378 (785)
T ss_pred -ccCcHHHhCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 11334444332 2455555555555555555555566666666777799993
No 101
>PLN00149 potassium transporter; Provisional
Probab=93.54 E-value=2.8 Score=44.99 Aligned_cols=175 Identities=12% Similarity=0.015 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc-------cccceeccccCCCCCCcch
Q 011598 132 IAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASA-------KFVFTHFNSDNGDGINSKV 204 (482)
Q Consensus 132 ~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 204 (482)
..+++++++..+.+.-+|....++. ++-+.++=.+.+...|+......++. .+..+-+.. ++..
T Consensus 199 v~is~~ILv~LF~~Q~~GT~kvg~~---FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~---~~~~--- 269 (779)
T PLN00149 199 VPVACIILIGLFALQHYGTHRVGFL---FAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKK---TQRG--- 269 (779)
T ss_pred hHHHHHHHHHHHHHhccccHHHhhh---hhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHH---CCCc---
Confidence 4578888889999999998866665 44444443334444444322211111 111111111 1111
Q ss_pred hhHHHhhHhHhHhhhccccc-chhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHH
Q 011598 205 YIFVLGLLMSQYTLTGYDAS-AHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIA 283 (482)
Q Consensus 205 ~~~~~~~~~~~~a~~G~e~~-~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (482)
-+..+..++.+.+|-|+. +.++ +-.+|.+.+|-..-+.=+.++.=...-++..- +++...+ ..
T Consensus 270 --g~~~LGgV~L~iTG~EALyADlG---HF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~--~p~~~~~---------~~ 333 (779)
T PLN00149 270 --GWMSLGGILLCITGSEAMFADLG---HFSQLSIKIAFTSLVYPSLILAYMGQAAYLSK--HHVIESD---------YR 333 (779)
T ss_pred --eeEeecchhhcccchhhhhhccc---CCCccceeeeehhhHHHHHHHHhhhHHHHHhc--Ccchhcc---------cc
Confidence 222344455678898875 2222 33356666654432222222111112222211 1221111 11
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCC
Q 011598 284 EIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMP 336 (482)
Q Consensus 284 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP 336 (482)
++|+....+ ++.+-+.+.+.+++.-+..+.+.++--++.+.-+-|.+|
T Consensus 334 ~pFy~~iP~-----~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fP 381 (779)
T PLN00149 334 IGFYVSVPE-----KLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFP 381 (779)
T ss_pred CcHHHhCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 234444332 255555555555555555555556666666777789999
No 102
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=93.45 E-value=0.67 Score=47.06 Aligned_cols=48 Identities=17% Similarity=0.063 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011598 130 VVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVST 180 (482)
Q Consensus 130 ~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 180 (482)
....++.++++..+.+.-+|....+|+ ++-++++=.+.+...|+....
T Consensus 147 ~Vvpitl~IL~~LF~iQ~~GT~~Vg~~---FGPVm~lWF~~l~~~Gl~~i~ 194 (627)
T COG3158 147 YVVPITLIILVLLFLIQRFGTGRVGKL---FGPVMLLWFLALAVLGLINII 194 (627)
T ss_pred ccHHHHHHHHHHHHHHhcccchhhhhh---hccHHHHHHHHHHHHHHHHHh
Confidence 455677788888899999998877765 555555545555555555443
No 103
>PLN00150 potassium ion transporter family protein; Provisional
Probab=93.10 E-value=0.38 Score=51.18 Aligned_cols=174 Identities=12% Similarity=0.079 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc-------cccceeccccCCCCCCc
Q 011598 130 VVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASA-------KFVFTHFNSDNGDGINS 202 (482)
Q Consensus 130 ~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 202 (482)
....+++++++..+.+.-+|....++. ++-+.++=.+.+...|+......++. .+..+-+.. ++..
T Consensus 213 ~Vv~is~~ILv~LF~iQ~~GT~kVg~~---FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~---~~~~- 285 (779)
T PLN00150 213 LVTIISCVILVILFSLQRFGTHKVSFL---FAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIR---NGRQ- 285 (779)
T ss_pred eehhhHHHHHHHHHHHHhccchhhhhh---hccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHh---CCCc-
Confidence 345678888888999999998866665 44444443333444444322211111 111111111 1111
Q ss_pred chhhHHHhhHhHhHhhhccccc-chhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCc
Q 011598 203 KVYIFVLGLLMSQYTLTGYDAS-AHMTEETKNADRNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYA 281 (482)
Q Consensus 203 ~~~~~~~~~~~~~~a~~G~e~~-~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (482)
-+..+..++.+.+|-|+. +.++ +-.+|.+.+|-..-+.=+.++.=+..-++ +.... ..
T Consensus 286 ----g~~~LG~V~L~iTGaEALyADlG---HFg~~~Iriaw~~~V~P~LlL~Y~GQaA~---------ll~~p-----~~ 344 (779)
T PLN00150 286 ----GWESLGGIVLCMTGTEAMFADLG---HFTVKSMQIAFTSLVYPCLLLTYLGQAAY---------LVKHM-----ED 344 (779)
T ss_pred ----eEEEecceeeeecchhhhhcccc---CCCccceeeeehhhHHHHHHHHHcchHHH---------HhcCc-----cc
Confidence 222334455568888875 2222 33355665554422222221111111111 11111 11
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCC
Q 011598 282 IAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMP 336 (482)
Q Consensus 282 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP 336 (482)
..++|+....+ ++.+-+.+...+++.-+..+.+.++--+..+.-+-|.+|
T Consensus 345 ~~npFf~~iP~-----~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fP 394 (779)
T PLN00150 345 VNDPFYRSLPK-----PIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFP 394 (779)
T ss_pred ccCcHHHhCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 11334444322 255555555555555555555556666666777789999
No 104
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=91.04 E-value=0.5 Score=31.75 Aligned_cols=50 Identities=10% Similarity=0.006 Sum_probs=38.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhheeeecccc
Q 011598 410 FNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHW 472 (482)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 472 (482)
||.| +.|.++.+++...++++.-.- ...++.+.++.+++..+|+.|.+||
T Consensus 1 F~vP-~vP~~P~~si~~ni~Lm~~L~------------~~twirf~iWl~iGl~iYf~YG~~h 50 (51)
T PF13906_consen 1 FKVP-LVPFLPALSILINIYLMAQLS------------ALTWIRFGIWLAIGLVIYFGYGIRH 50 (51)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhh------------HhHHHHHHHHHHHHHHHHHheeeec
Confidence 5667 788888888888888766432 2257778888889999998888876
No 105
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=88.28 E-value=33 Score=35.26 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCC-CCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 011598 299 GGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDG-AMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQA 377 (482)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg-~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~ 377 (482)
+..+.....++..+.-..+...+++-++..++.+| .-| +..-|+ .++++. +++...+++ .+..+..+.
T Consensus 403 l~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~p--p~~~r~------~W~v~~-~~ia~~lL~--~ggl~aLqt 471 (537)
T COG1292 403 LGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDP--PRWVRV------FWGVLI-GLIAAVLLL--IGGLEALQT 471 (537)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCC--hHHHHH------HHHHHH-HHHHHHHHH--hCCHHHHHH
Confidence 66677777777777777788888888888887665 334 332221 122222 222222222 333455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 011598 378 MVSIATIGLYIAYALPIFFRVTLAR 402 (482)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~~~~~r~ 402 (482)
..-++..-+.+..++.+.+.+|--|
T Consensus 472 ~~ii~alPF~~vll~~~~sl~k~l~ 496 (537)
T COG1292 472 AAIITALPFSLVLLVMMFSLIKDLK 496 (537)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHH
Confidence 6666666666666667777766533
No 106
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=87.98 E-value=1.7 Score=45.17 Aligned_cols=24 Identities=8% Similarity=-0.171 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHhhhheeeeccccc
Q 011598 450 TPVAVCGLLILTVSAWIFSARHWF 473 (482)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~r~~~ 473 (482)
......+...+..+.|..|+|+.+
T Consensus 472 ~~~~~~i~~~~~~~~~~~~~~~~~ 495 (496)
T PRK15238 472 MIGGPVFFSILAWIIYQNYEKKMA 495 (496)
T ss_pred HHHHHHHHHHHHHHHHHhhchhcc
Confidence 444555555556666778877765
No 107
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=85.01 E-value=53 Score=34.29 Aligned_cols=127 Identities=8% Similarity=0.008 Sum_probs=65.5
Q ss_pred chhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhh
Q 011598 127 SKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYI 206 (482)
Q Consensus 127 ~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (482)
+.|...+..+++-++..+...+|+|.+||+-.+....-.+.+.++.+-++ ..+ ....+.+...++|-..+. +...
T Consensus 250 ~~~~~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl-~l~---ga~~g~~y~~~~~~~kl~-~~~v 324 (629)
T KOG3659|consen 250 PSWTLALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGL-TLP---GAKNGIQYYLTPDIEKLK-EPSV 324 (629)
T ss_pred CchHHHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcc-ccc---ccccchhheecccHHHHh-hHHH
Confidence 34555555555566667889999999999855554444322222222232 111 111122222222211111 1345
Q ss_pred HHHhhHhHhHhh-hcccccchhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Q 011598 207 FVLGLLMSQYTL-TGYDASAHMTEETKNADRNGPKGIISAIGISIIFGWGYILG 259 (482)
Q Consensus 207 ~~~~~~~~~~a~-~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~y~l~~~~ 259 (482)
+..+....+++. .|+.....+++-.|--++=..-|++.|.+ -...+++..+.
T Consensus 325 W~dAAtqiffslg~GfG~L~AfaSyn~F~NNc~rDAll~S~i-n~~ts~~sgfv 377 (629)
T KOG3659|consen 325 WIDAATQIFFSLGPGFGVLIAFASYNKFHNNCYRDALLTSII-NCLTSFLSGFV 377 (629)
T ss_pred HHHHHHHHHhhcCccchhhhhhhhhcccccchhhhhHHHHHH-HHHHHHHHHHH
Confidence 666777777765 78888888887766533444445555543 33334433333
No 108
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=82.97 E-value=17 Score=32.76 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=7.6
Q ss_pred chHHHHHHHHHHHHHH
Q 011598 349 IPINAVWLSAFISFCM 364 (482)
Q Consensus 349 ~P~~ai~~~~~i~~i~ 364 (482)
....++++.++++.+.
T Consensus 82 ~ld~~L~~~~if~~~~ 97 (206)
T PF06570_consen 82 ALDNSLLFFGIFSLLF 97 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555443
No 109
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=80.59 E-value=25 Score=30.51 Aligned_cols=11 Identities=0% Similarity=0.135 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q 011598 353 AVWLSAFISFC 363 (482)
Q Consensus 353 ai~~~~~i~~i 363 (482)
++++.++++++
T Consensus 101 sLl~lg~~aLl 111 (226)
T COG4858 101 SLLFLGAMALL 111 (226)
T ss_pred cHHHHHHHHHH
Confidence 56666666665
No 110
>PRK03557 zinc transporter ZitB; Provisional
Probab=72.69 E-value=61 Score=31.27 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCccccchhhHHHHHHHHHH
Q 011598 383 TIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGIVVGWIAVLWV 427 (482)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (482)
+..-.+...+..++...-+|+++++.||-..|..+..+.+..+..
T Consensus 54 sl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~~l 98 (312)
T PRK03557 54 MLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIAL 98 (312)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 444445555555555555666677778777655555554444333
No 111
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=57.80 E-value=72 Score=30.53 Aligned_cols=42 Identities=7% Similarity=-0.077 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCccccchhhHHHHHHH
Q 011598 383 TIGLYIAYALPIFFRVTLARKSFIPGPFNLGRYGIVVGWIAV 424 (482)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 424 (482)
+..-.+...+..++....+|+++++.||-..|..+..+.+..
T Consensus 46 sl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 87 (299)
T PRK09509 46 SLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQS 87 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHH
Confidence 344445555555555555566677778777655555544433
No 112
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=51.51 E-value=2.4e+02 Score=27.52 Aligned_cols=139 Identities=11% Similarity=0.061 Sum_probs=77.0
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhH
Q 011598 73 AGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISI 152 (482)
Q Consensus 73 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~ 152 (482)
..|.+|.. ......++.-..+...+....++.+...++.. +.. ...+.++..+.++- .--+...|.
T Consensus 195 ~~P~lGgr---~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-------svd--~~sWm~i~~a~LLp--c~FLk~Lk~ 260 (524)
T KOG4303|consen 195 YKPGLGGR---WVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-------SVD--KASWMMITSASLLP--CSFLKDLKI 260 (524)
T ss_pred cCCCcchh---eeeHHHHHHHHHHHHhhhheechhhhccCCCC-------Ccc--ccchhhhhhHHHhh--hHHHHHHHH
Confidence 45565522 22223333334444555566666666554321 121 22333343333332 233467889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhcc
Q 011598 153 LSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETK 232 (482)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k 232 (482)
.+|+..+.++..++.-++++..++-..++- .+.... |.-+...+...+.+..|+|+---...++-+.+|
T Consensus 261 VS~lSf~ct~sH~viN~i~v~YCLs~~~dW-----~wskv~------Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~ 329 (524)
T KOG4303|consen 261 VSRLSFFCTISHLVINLIMVLYCLSFVSDW-----SWSKVT------FSIDINTFPISVGMIVFSYTSQIFLPNLEGNMK 329 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----cceeEE------EEEEcccCceEEEEEEEeeeceeeccccccccC
Confidence 999999999999888777777666544321 111110 111111144455677888988888899999999
Q ss_pred cccc
Q 011598 233 NADR 236 (482)
Q Consensus 233 ~P~k 236 (482)
||.+
T Consensus 330 ~ps~ 333 (524)
T KOG4303|consen 330 NPSQ 333 (524)
T ss_pred ChhH
Confidence 9853
No 113
>COG4025 Predicted membrane protein [Function unknown]
Probab=47.41 E-value=1.4e+02 Score=27.15 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=13.0
Q ss_pred hhhhhhhhhccCCCCCc
Q 011598 321 SNSRMAYAFSRDGAMPF 337 (482)
Q Consensus 321 ~~sR~l~a~a~dg~lP~ 337 (482)
..-|-+.++.||+.+|-
T Consensus 55 ~~ve~v~e~~re~~i~~ 71 (284)
T COG4025 55 SKVEKVMEKVREFQIPL 71 (284)
T ss_pred HHHHHHHHHHhcCCCcC
Confidence 45577888999998873
No 114
>PRK11056 hypothetical protein; Provisional
Probab=47.31 E-value=1e+02 Score=24.72 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=4.5
Q ss_pred CCCCCCCCCC
Q 011598 438 VAYPITSDTL 447 (482)
Q Consensus 438 ~~~~~~~~~~ 447 (482)
...|..+.++
T Consensus 85 aeyPeiGSNF 94 (120)
T PRK11056 85 AEYPEIGSNF 94 (120)
T ss_pred hcCcccccch
Confidence 3444444444
No 115
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.91 E-value=9 Score=31.08 Aligned_cols=13 Identities=0% Similarity=-0.100 Sum_probs=5.4
Q ss_pred hhheeeecccccc
Q 011598 462 VSAWIFSARHWFK 474 (482)
Q Consensus 462 ~~~~~~~~r~~~~ 474 (482)
+++|+++||+|+.
T Consensus 83 li~y~irR~~Kk~ 95 (122)
T PF01102_consen 83 LISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHS---
T ss_pred HHHHHHHHHhccC
Confidence 4445555555554
No 116
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=46.27 E-value=3.8e+02 Score=28.31 Aligned_cols=45 Identities=16% Similarity=-0.034 Sum_probs=28.7
Q ss_pred cHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011598 281 AIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYA 328 (482)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 328 (482)
..+....+.+++..|.+. ++..++.-+.++++.+.+++.+-+.+.
T Consensus 318 ~~P~fV~d~~~~~pGl~G---Lfia~vfsA~LSsLSS~~NS~s~v~~e 362 (585)
T KOG2349|consen 318 LLPLFVMDLMGHLPGLRG---LFIAVVFSAALSSLSSIFNSLSTVFLE 362 (585)
T ss_pred cccHHHHHhcCCCCCccc---hhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 333556677777666443 555666666777777777777766665
No 117
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=44.15 E-value=29 Score=30.77 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=24.5
Q ss_pred hhccccc-cccchHHHHHHHHHHHHHHHHHHH
Q 011598 229 EETKNAD-RNGPKGIISAIGISIIFGWGYILG 259 (482)
Q Consensus 229 ~E~k~P~-k~ip~ai~~~~~~~~~~y~l~~~~ 259 (482)
|-.+||| |..||+++.+.+...++-+...+.
T Consensus 205 EGfHDPKFKr~p~~vias~vaS~~~gii~v~~ 236 (240)
T PRK00968 205 EGFHDPKFKRWPRAVIASFVASLVCGIVAVLM 236 (240)
T ss_pred ecCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5568998 999999999988887776655443
No 118
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=41.73 E-value=8.6 Score=35.60 Aligned_cols=18 Identities=6% Similarity=0.111 Sum_probs=0.0
Q ss_pred eecCCC-CchHHHHHHHHH
Q 011598 342 HEVNSQ-DIPINAVWLSAF 359 (482)
Q Consensus 342 ~~~~~~-~~P~~ai~~~~~ 359 (482)
.|+++| --|..++++...
T Consensus 12 ~~r~pr~p~~~a~l~~~~l 30 (381)
T PF05297_consen 12 GRRPPRCPQPHASLLFGLL 30 (381)
T ss_dssp -------------------
T ss_pred CCCCCCCCCcchhHHHHHH
Confidence 466777 445544444433
No 119
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=37.65 E-value=1.2e+02 Score=29.03 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhccccCCCCCccccchhhHHHHHHHHHHHH
Q 011598 389 AYALPIFFRVTLARKSFIPGPFNLGRYGIVVGWIAVLWVAT 429 (482)
Q Consensus 389 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (482)
.-....++...-+|+.++++||-..|.....+.+..+...+
T Consensus 54 ~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~sl~~~~~i~~ 94 (304)
T COG0053 54 ASLIVLIGLRISSKPPDRDHPYGHGKAETLASLIVSILIFA 94 (304)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 33344444455556667888888776555444444433333
No 120
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=36.61 E-value=4.7e+02 Score=27.87 Aligned_cols=20 Identities=15% Similarity=0.464 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhhheeeecc
Q 011598 451 PVAVCGLLILTVSAWIFSAR 470 (482)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~r 470 (482)
.++++...++.++.|..+.+
T Consensus 276 ~lviG~~~Lv~F~~wE~~~~ 295 (599)
T PF06609_consen 276 PLVIGFVLLVAFVVWEWFGA 295 (599)
T ss_pred hHHHHHHHHHHHHHhhhhcc
Confidence 45566666666777766544
No 121
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=35.54 E-value=3.5e+02 Score=27.85 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCCC-CCCCCCCchHHHHHHHHHHhhhheeeecccc
Q 011598 415 YGIVVGWIAVLWVATISVLFSLPVAYP-ITSDTLNYTPVAVCGLLILTVSAWIFSARHW 472 (482)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 472 (482)
.+...++++.+..+.+.......+... .+..+.........+++++..+.++.+-|++
T Consensus 192 ~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~ 250 (477)
T PF11700_consen 192 LGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDR 250 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 677778887777776666554433322 1122234445556666555544444443443
No 122
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=34.35 E-value=54 Score=28.04 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=23.0
Q ss_pred hhccccc-cccchHHHHHHHHHHHHHHHHHH
Q 011598 229 EETKNAD-RNGPKGIISAIGISIIFGWGYIL 258 (482)
Q Consensus 229 ~E~k~P~-k~ip~ai~~~~~~~~~~y~l~~~ 258 (482)
|..+||| |..||+++.+.+...+.-++..+
T Consensus 195 EGfHDPKfkk~pk~vias~vasil~~iia~l 225 (230)
T COG4060 195 EGFHDPKFKKLPKAVIASLVASILAGIIAVL 225 (230)
T ss_pred ecccChhhhccchHHHHHHHHHHHHHHHHHH
Confidence 5568998 99999999998877766555443
No 123
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=34.20 E-value=4.9e+02 Score=26.03 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 011598 299 GGIVCLGVVAVAIFFCGMSSVTSNSRMAYAF 329 (482)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ 329 (482)
...++.+..+.+..++..+..++..-++...
T Consensus 294 a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 294 AGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888877665555443
No 124
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=33.33 E-value=1.3e+02 Score=27.38 Aligned_cols=17 Identities=6% Similarity=0.102 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011598 372 AVAFQAMVSIATIGLYI 388 (482)
Q Consensus 372 ~~~~~~l~~~~~~~~~~ 388 (482)
.+.++.+...+.....+
T Consensus 57 ~~~~~~i~~yg~~~h~i 73 (224)
T PF09930_consen 57 MEIYEFILRYGMVIHLI 73 (224)
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 45555555555444333
No 125
>PF14256 YwiC: YwiC-like protein
Probab=32.79 E-value=2.8e+02 Score=22.78 Aligned_cols=12 Identities=17% Similarity=0.764 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 011598 355 WLSAFISFCMAL 366 (482)
Q Consensus 355 ~~~~~i~~i~~~ 366 (482)
+.+..+..+...
T Consensus 8 W~Ml~~P~l~G~ 19 (129)
T PF14256_consen 8 WAMLLVPFLLGM 19 (129)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 126
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=32.47 E-value=1.3e+02 Score=28.09 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhccccCCCCCccccchhhHHHHHHHH
Q 011598 390 YALPIFFRVTLARKSFIPGPFNLGRYGIVVGWIAVL 425 (482)
Q Consensus 390 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 425 (482)
..+..++...-+|+++++.||-..|..+..+.+..+
T Consensus 32 ~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~ 67 (268)
T TIGR01297 32 SAIALLALRISRRPADERHPFGHGRAEILAALLNGL 67 (268)
T ss_pred HHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHH
Confidence 334444444455566777777766555444444333
No 127
>PTZ00206 amino acid transporter; Provisional
Probab=32.29 E-value=5.7e+02 Score=26.22 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=39.8
Q ss_pred cHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCccccce
Q 011598 281 AIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWH 342 (482)
Q Consensus 281 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~f~ 342 (482)
...+.....+|+. ...++.+...+..+++..+++...+..+...-++...| +++.
T Consensus 122 sY~~la~~~~G~~-----g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~--~~~~ 176 (467)
T PTZ00206 122 TYEGVARVLLGPW-----GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAP--DFLK 176 (467)
T ss_pred CHHHHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--chhh
Confidence 4445555555443 78899999999999999999999998887765544445 4443
No 128
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=32.28 E-value=1.6e+02 Score=23.53 Aligned_cols=9 Identities=22% Similarity=0.567 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q 011598 439 AYPITSDTL 447 (482)
Q Consensus 439 ~~~~~~~~~ 447 (482)
..|..+.++
T Consensus 86 qyPeiGSNF 94 (117)
T PF07226_consen 86 QYPEIGSNF 94 (117)
T ss_pred hchhhhhhH
Confidence 344444444
No 129
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=30.49 E-value=3.4e+02 Score=23.01 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=7.5
Q ss_pred eeecccccccccC
Q 011598 466 IFSARHWFKGPIT 478 (482)
Q Consensus 466 ~~~~r~~~~~~~~ 478 (482)
..+.|+.+++|-+
T Consensus 141 ~~W~~~f~~GPlE 153 (163)
T PF04235_consen 141 YLWLRRFRRGPLE 153 (163)
T ss_pred HHHHHhcCcCcHH
Confidence 3456666666643
No 130
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=29.14 E-value=52 Score=20.83 Aligned_cols=10 Identities=10% Similarity=0.238 Sum_probs=4.4
Q ss_pred hhheeeeccc
Q 011598 462 VSAWIFSARH 471 (482)
Q Consensus 462 ~~~~~~~~r~ 471 (482)
.++++.|||+
T Consensus 30 ~~l~~~~rR~ 39 (40)
T PF08693_consen 30 AFLFFWYRRK 39 (40)
T ss_pred HHhheEEecc
Confidence 3334345554
No 131
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=28.31 E-value=5.3e+02 Score=24.64 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCccccchh
Q 011598 384 IGLYIAYALPIFFRVTLARKSFIPGPFNLGRYG 416 (482)
Q Consensus 384 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 416 (482)
..-.+..++..++...-||++..+++|-.+|..
T Consensus 58 l~D~~al~lal~A~~~a~r~~~~~~TfGy~R~e 90 (296)
T COG1230 58 LSDALALLLALIAIKLARRPATKRFTFGYKRLE 90 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHH
Confidence 334455556666666666655555555555433
No 132
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=25.33 E-value=4.7e+02 Score=24.37 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=20.8
Q ss_pred HHHHHHHHhccccCCCCCccccchhhHHHHHHHHHHHHHH
Q 011598 392 LPIFFRVTLARKSFIPGPFNLGRYGIVVGWIAVLWVATIS 431 (482)
Q Consensus 392 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (482)
+........+|.++++.||-..|..+.......+..++..
T Consensus 43 ~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~~~ 82 (284)
T PF01545_consen 43 ISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIFLG 82 (284)
T ss_dssp HHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhhhH
Confidence 3344444445555667777776666655554444444333
No 133
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=23.56 E-value=5.3e+02 Score=22.94 Aligned_cols=10 Identities=10% Similarity=0.308 Sum_probs=5.5
Q ss_pred CchHHHHHHH
Q 011598 348 DIPINAVWLS 357 (482)
Q Consensus 348 ~~P~~ai~~~ 357 (482)
+.|.++.+..
T Consensus 26 ~n~v~s~l~L 35 (198)
T PRK06638 26 RNPVHSALFL 35 (198)
T ss_pred ccHHHHHHHH
Confidence 3577765443
No 134
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=23.35 E-value=2.2e+02 Score=19.57 Aligned_cols=26 Identities=8% Similarity=0.036 Sum_probs=19.4
Q ss_pred HHhhHhHhHhhhcccccchhhhhccc
Q 011598 208 VLGLLMSQYTLTGYDASAHMTEETKN 233 (482)
Q Consensus 208 ~~~~~~~~~a~~G~e~~~~~~~E~k~ 233 (482)
+..+-...+++.|...-.+.-+|.++
T Consensus 2 ~~~~~sVl~af~GVqs~~~~e~Df~~ 27 (56)
T PF11174_consen 2 WQVVKSVLWAFFGVQSSKNRERDFAQ 27 (56)
T ss_pred HHHHHHHHHHHhCcCcchhHHHHHHc
Confidence 34556678899999988888877754
No 135
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=22.79 E-value=43 Score=27.08 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHhh-hheeeeccccccccc
Q 011598 450 TPVAVCGLLILTV-SAWIFSARHWFKGPI 477 (482)
Q Consensus 450 ~~~~~~~~~~~~~-~~~~~~~r~~~~~~~ 477 (482)
..+..++++.+.. ..|..+.|||+++++
T Consensus 86 vlLs~GLmlL~~~alcW~~~~rkK~~kr~ 114 (129)
T PF15099_consen 86 VLLSLGLMLLACSALCWKPIIRKKKKKRR 114 (129)
T ss_pred HHHHHHHHHHHhhhheehhhhHhHHHHhh
Confidence 3445555555544 667766666554433
No 136
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.58 E-value=3.5e+02 Score=24.44 Aligned_cols=19 Identities=0% Similarity=0.179 Sum_probs=9.2
Q ss_pred hhhheeeecccccccccCC
Q 011598 461 TVSAWIFSARHWFKGPITN 479 (482)
Q Consensus 461 ~~~~~~~~~r~~~~~~~~~ 479 (482)
.++.+...++++||.+.+|
T Consensus 188 ~~V~~~~~~~~~kr~~~~~ 206 (214)
T cd08764 188 GLVVYLVTEPDYKRIELPE 206 (214)
T ss_pred HHHHHhccCcccCCCCCch
Confidence 3444555555555544433
No 137
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=21.90 E-value=5.3e+02 Score=22.99 Aligned_cols=21 Identities=10% Similarity=0.033 Sum_probs=9.6
Q ss_pred eecCCC-CchHHHHHHHHHHHH
Q 011598 342 HEVNSQ-DIPINAVWLSAFISF 362 (482)
Q Consensus 342 ~~~~~~-~~P~~ai~~~~~i~~ 362 (482)
.|.-++ -+++--+.+-.-++.
T Consensus 19 ~~~~~~~~t~hE~~sL~LQl~~ 40 (206)
T PF09874_consen 19 RKLVKRDLTEHELLSLKLQLLF 40 (206)
T ss_pred HHHhhcCCcHHHHHHHHHHHHH
Confidence 444444 556554444333333
Done!