Query 011598
Match_columns 482
No_of_seqs 141 out of 1502
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 11:28:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 4E-49 1.4E-53 401.0 36.6 425 2-480 13-439 (445)
2 4djk_A Probable glutamate/gamm 100.0 1E-48 3.4E-53 405.1 38.4 432 2-468 16-464 (511)
3 3gia_A Uncharacterized protein 100.0 1.8E-45 6.1E-50 374.0 32.8 357 2-404 11-369 (444)
4 2jln_A MHP1; hydantoin, transp 98.6 0.00064 2.2E-08 68.9 36.7 255 34-329 61-329 (501)
5 2a65_A Leutaa, Na(+):neurotran 98.2 0.00088 3E-08 67.5 27.7 122 129-252 166-289 (519)
6 3dh4_A Sodium/glucose cotransp 97.9 0.014 4.6E-07 59.6 29.7 32 296-327 318-349 (530)
7 2xq2_A Sodium/glucose cotransp 97.5 0.036 1.2E-06 57.3 25.9 216 17-254 69-299 (593)
8 2wsw_A BCCT family betaine/car 95.3 2.6 8.8E-05 42.0 22.5 105 285-400 398-502 (509)
9 4ain_A Glycine betaine transpo 92.1 5.5 0.00019 39.8 16.5 104 284-401 398-504 (539)
10 2ks1_B Epidermal growth factor 60.0 5.9 0.0002 24.7 2.3 14 460-473 27-40 (44)
11 3j1z_P YIIP, cation efflux fam 46.3 29 0.001 32.0 5.8 30 393-422 58-87 (306)
12 2l2t_A Receptor tyrosine-prote 44.3 7.3 0.00025 24.3 0.9 8 465-472 31-38 (44)
13 3h90_A Ferrous-iron efflux pum 43.9 47 0.0016 30.1 6.8 33 392-424 48-80 (283)
14 3rko_J NADH-quinone oxidoreduc 24.1 3.2E+02 0.011 22.9 9.6 10 349-358 24-33 (184)
15 2l8s_A Integrin alpha-1; trans 22.7 46 0.0016 21.7 1.9 8 474-481 41-48 (54)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=4e-49 Score=401.03 Aligned_cols=425 Identities=15% Similarity=0.175 Sum_probs=332.8
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcch
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFA 81 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~ 81 (482)
++++++.++.+ ..+|+|..++. +..+||. .+++|+++++.+++.+++|+|+++++|++||.|.|++|. +||.+
T Consensus 13 ~~~~~l~ig~~-iG~Gif~~~~~-~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~----~G~~~ 85 (445)
T 3l1l_A 13 IPVTLMVSGAI-MGSGVFLLPAN-LASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRC----FGPFL 85 (445)
T ss_dssp HHHHHHHHHHH-CSSHHHHHHHH-HHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHH----SCHHH
T ss_pred HHHHHHHHHhH-HhhhHHhhHHH-HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhH----cCChH
Confidence 56778888766 46889998877 4457885 889999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 011598 82 SWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAA 161 (482)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (482)
|+..+|.+++.+....+..+....+++...++. ..++++..+++++++++...+|++|+|..+|++.+.+
T Consensus 86 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~ 155 (445)
T 3l1l_A 86 GYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI----------LKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVAT 155 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG----------GGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc----------ccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 999999999998877777777777766543221 1234667788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccccccchH
Q 011598 162 AWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGPKG 241 (482)
Q Consensus 162 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip~a 241 (482)
..|++.++++++.++...+.++. .+++.+ ++.. +..++..++...+|+|.|+|..++++||+|||+|++||+
T Consensus 156 ~~~i~~~~~~~i~~~~~~~~~~~----~~~~~~---~~~~-~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a 227 (445)
T 3l1l_A 156 VLALIPIVGIAVFGWFWFRGETY----MAAWNV---SGLG-TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIA 227 (445)
T ss_dssp HHHHHHHHHHHHTTSTTCCCCCC----CCC---------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhc----ccccCc---cCCc-cHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHH
Confidence 99999988888777654432111 112212 1111 234588899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhh
Q 011598 242 IISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTS 321 (482)
Q Consensus 242 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (482)
+..+...+.++|++..+...... +++++.+.+ .|..+.+.+..++ +...++.+..+++.+++.++.+++
T Consensus 228 ~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~-----~p~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~ 296 (445)
T 3l1l_A 228 TIGGVLIAAVCYVLSTTAIMGMI-PNAALRVSA-----SPFGDAARMALGD-----TAGAIVSFCAAAGCLGSLGGWTLL 296 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-CTTTSCSTT-----CTHHHHHHHHHCT-----THHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CHHHHhccC-----cHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888 555554333 6776666655544 378889999999999999999999
Q ss_pred hhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 322 NSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGS--AVAFQAMVSIATIGLYIAYALPIFFRVT 399 (482)
Q Consensus 322 ~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 399 (482)
.+|++++++|||.+| |+|+|+||+++|+++++++.+++.++.+....+ .+.++.+.++.+....+.|.+.+++.++
T Consensus 297 ~sR~~~~~a~dg~lP--~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~ 374 (445)
T 3l1l_A 297 AGQTAKAAADDGLFP--PIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLL 374 (445)
T ss_dssp HHHHHHHHHHTTSSC--GGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCc--HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999988999999999999888766544333 3568999999999999999999999999
Q ss_pred hccccCCCCCccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhheeeecccccccccCC
Q 011598 400 LARKSFIPGPFNLGRYGIVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSAWIFSARHWFKGPITN 479 (482)
Q Consensus 400 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 479 (482)
+|||+. + .|.| ..+.++.++.+.+++..+... .. ......++.+++..+|..++||++++++.+
T Consensus 375 ~r~~~~--~-~r~~-~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~ 438 (445)
T 3l1l_A 375 LGHGHF--G-KARP-AYLAVTTIAFLYCIWAVVGSG-----------AK-EVMWSFVTLMVITAMYALNYNRLHKNPYPL 438 (445)
T ss_dssp HHSSSS--G-GGCT-TTHHHHHHHHHHHHHHHHHSC-----------HH-HHHHHHHHHHHHHHHHHHHHSTTCCCSSCC
T ss_pred HhhcCc--c-cccc-hhHHHHHHHHHHHHHHHHHcC-----------HH-HHHHHHHHHHHHHHHHHHHhhhcccCcccc
Confidence 987653 2 2444 677888888887777654321 11 233344555556666656555555544444
Q ss_pred C
Q 011598 480 I 480 (482)
Q Consensus 480 ~ 480 (482)
.
T Consensus 439 ~ 439 (445)
T 3l1l_A 439 D 439 (445)
T ss_dssp C
T ss_pred c
Confidence 3
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=1e-48 Score=405.11 Aligned_cols=432 Identities=15% Similarity=0.161 Sum_probs=327.6
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHH-HHHHHHHHHHhhh--hcCCCChhhhHHHhhcCCCCC
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAF-TLFVGSSMAEICS--SYPTSGGLYYWSAKLAGPKWA 78 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~-~l~~a~~~ael~~--~~p~~Gg~y~~~~~~~~~~~g 78 (482)
+++++++++.+. |++..+. ...+|+. .++.++++++. .++.+++++|+++ ++| +||.|.|++|. +|
T Consensus 16 ~~~~~l~~~~~i---g~~~~~~--~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~~~----~g 84 (511)
T 4djk_A 16 LGFFAITASMVM---AVYEYPT--FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVSNT----LG 84 (511)
T ss_dssp HHHHHHTGGGGC---CGGGHHH--HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHHHHH----HC
T ss_pred HHHHHHHHHHHH---hhchhHH--HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhHHhh----cC
Confidence 466677776655 3444443 3557885 66667777665 4679999999999 999 99999999999 88
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 011598 79 PFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQ 158 (482)
Q Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~ 158 (482)
|..|+..+|.+++++....+.......+++...+ ..+++..++++..+++++++++.+.+|++|+|..++++.
T Consensus 85 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~ 157 (511)
T 4djk_A 85 PRWGFAAISFGYLQIAIGFIPMLYFVLGALSYIL-------KWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAK 157 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTT-------TCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 8899999999999998877777766666664331 011244556677888889999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHhhhccccccccc--ccceeccccCCCCCCcchhhHHHhhHhHhHhhhcccccchhhhhccccc
Q 011598 159 LAAAWNLVG-VMVLMILIPSVSTERASAK--FVFTHFNSDNGDGINSKVYIFVLGLLMSQYTLTGYDASAHMTEETKNAD 235 (482)
Q Consensus 159 ~~~~~~~~~-~l~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~ 235 (482)
+.+.++++. ++++++.++.....+++.+ ...+++.+ ++.. .+.+.++...+|+|.|+|.+++++||+|||+
T Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~ 231 (511)
T 4djk_A 158 VGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFP----DFSK--VGTLVVFVAFILSYMGVEASATHVNEMSNPG 231 (511)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTC------------CCCC----CTTS--TTTTTTHHHHHHHHTTGGGGTGGGSSSSCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCC----Cccc--chHHHHHHHHHHHHhhHHHHHHHHHhccCcc
Confidence 998886554 5555555554332221111 11122211 0111 2244567778999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCC--CCchhHHHHHHHHHHHHH
Q 011598 236 RNGPKGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFG--SGVGGIVCLGVVAVAIFF 313 (482)
Q Consensus 236 k~ip~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~ 313 (482)
|++|||+..++.++.++|++..++..... ++++.... .+..+.+....+. .| .++...++.+..+++.++
T Consensus 232 k~ip~ai~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 303 (511)
T 4djk_A 232 RDYPLAMLLLMVAAICLSSVGGLSIAMVI-PGNEINLS------AGVMQTFTVLMSH-VAPEIEWTVRVISALLLLGVLA 303 (511)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTS-CTTSCCSS------STHHHHHHHHHSS-SCSSCTTHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHeec-CHhhcccc------chHHHHHHHHHHH-hCccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 44444322 2334555555544 35 566788999999999999
Q ss_pred HhhhhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhch-----HHHHHHHHHHHHHHHHH
Q 011598 314 CGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGS-----AVAFQAMVSIATIGLYI 388 (482)
Q Consensus 314 ~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~-----~~~~~~l~~~~~~~~~~ 388 (482)
+.++.+++.+|+++++||||.+| |+|+|+||+++|+++++++..+..+... ...+ ++.++.+.++.+....+
T Consensus 304 ~~~~~~~~~sR~l~a~ardg~lP--~~~~~~~~~~~P~~ai~~~~~~~~l~~~-~~~~~~~~~~~~f~~l~~~~~~~~~~ 380 (511)
T 4djk_A 304 EIASWIVGPSRGMYVTAQKNLLP--AAFAKMNKNGVPVTLVISQLVITSIALI-ILTNTGGGNNMSFLIALALTVVIYLC 380 (511)
T ss_dssp HHHHHTTHHHHHTCHHHHGGGCS--SSCCCCCSSSCCCHHHHHHHHHHHHHHH-HHHSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCccc--HHHHhcCCCCCcHHHHHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999889999999999554443333 2333 67899999999999999
Q ss_pred HHHHHHHHHHHhcccc-CCCCCcccc--chh-hHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHhhhh
Q 011598 389 AYALPIFFRVTLARKS-FIPGPFNLG--RYG-IVVGWIAVLWVATISVLFSLPVAYPITSDTLNYTPVAVCGLLILTVSA 464 (482)
Q Consensus 389 ~~~~~~~~~~~~r~~~-~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (482)
.|.+.+++.+++|||+ +.+||||.| ++. +.+++++++++++.++..++|+..+.+.++++|........+++..++
T Consensus 381 ~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~ 460 (511)
T 4djk_A 381 AYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALP 460 (511)
T ss_dssp HHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHTTCCCSCSTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHeeeeCCccccCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999988887655 567899987 333 568889999999999999999988888888999887777777777666
Q ss_pred eeee
Q 011598 465 WIFS 468 (482)
Q Consensus 465 ~~~~ 468 (482)
|..+
T Consensus 461 ~~~~ 464 (511)
T 4djk_A 461 FILY 464 (511)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=1.8e-45 Score=374.02 Aligned_cols=357 Identities=13% Similarity=0.173 Sum_probs=298.6
Q ss_pred chhhHHHHHHHhhhhHHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcc-
Q 011598 2 LSNFAFSFSIISVLTGITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPF- 80 (482)
Q Consensus 2 ~~~~~~~~~~~~~~~gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~- 80 (482)
+++++++++.+ ..+|++..++...+.+|| +.+++|+++++++++.+++++|+++++|++||.|.|++|. +||.
T Consensus 11 ~~~~~l~~g~~-iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~----~G~~~ 84 (444)
T 3gia_A 11 WEAVSMAVGVM-IGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKA----IGDNI 84 (444)
T ss_dssp HHHHHHHHHHH-HHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHH----HCSSH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHH----hCcch
Confidence 57888999988 478899999999998999 5999999999999999999999999999999999999999 6665
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 011598 81 ASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLA 160 (482)
Q Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (482)
.+...+|.+++.+....+..+...++++...++. ..+++...+++.+++++...+|++|+|..+|++.++
T Consensus 85 ~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~ 154 (444)
T 3gia_A 85 ITGALSILLWMSYVISIALFAKGFAGYFLPLINA----------PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFI 154 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----------CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------CCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445579999999888888888888888775421 123455667788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcc-hhhHHHhhHhHhHhhhcccccchhhhhccccccccc
Q 011598 161 AAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSK-VYIFVLGLLMSQYTLTGYDASAHMTEETKNADRNGP 239 (482)
Q Consensus 161 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~G~e~~~~~~~E~k~P~k~ip 239 (482)
+.+|++.++++++.++...+.+ + +++. +.++ ..+++.+....+|+|.|+|..++++||+|||+||+|
T Consensus 155 ~~~~i~~~~~~ii~~~~~~~~~---~--~~~~-------~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip 222 (444)
T 3gia_A 155 VLVKLLILGLFIFAGLITIHPS---Y--VIPD-------LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVP 222 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHCCGG---G--TSCC-------CSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcChh---h--cCCC-------CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchh
Confidence 9999999998888877654311 1 1111 1122 245888888899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 011598 240 KGIISAIGISIIFGWGYILGITFAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSV 319 (482)
Q Consensus 240 ~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 319 (482)
|++..+...+.++|++..+...... +++++.+.++ .|..+......++ +...++.+..+++.+++.++.+
T Consensus 223 ~ai~~~~~~~~~~y~~~~~~~~~~~-~~~~l~~~~~----~~~~~~~~~~~g~-----~~~~~i~~~~~~~~~~~~~~~~ 292 (444)
T 3gia_A 223 RAIFISILIVMFVYVGVAISAIGNL-PIDELIKASE----NALAVAAKPFLGN-----LGFLLISIGALFSISSAMNATI 292 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-CHHHHHHTGG----GHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHhcccc----hhHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888 6666544332 4665555555443 3667889999999999999999
Q ss_pred hhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 320 TSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCMALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVT 399 (482)
Q Consensus 320 ~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 399 (482)
++.+|++++++|||.+| |+|+|+|+ ++|.++++++.+++.++.+.. .++.+.++.+.+..+.|.+.+++.++
T Consensus 293 ~~~sR~l~a~a~dg~lP--~~f~~~~~-~~P~~a~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~ 364 (444)
T 3gia_A 293 YGGANVAYSLAKDGELP--EFFERKVW-FKSTEGLYITSALGVLFALLF-----NMEGVASITSAVFMVIYLFVILSHYI 364 (444)
T ss_dssp TTTHHHHHHHHHHSSCC--SSCCTTSC-CSCTHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC--HHHhCCCC-CCCcHHHHHHHHHHHHHHHHc-----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999985 459999999999988866632 37789999999999999999999999
Q ss_pred hcccc
Q 011598 400 LARKS 404 (482)
Q Consensus 400 ~r~~~ 404 (482)
+|||+
T Consensus 365 ~r~~~ 369 (444)
T 3gia_A 365 LIDEV 369 (444)
T ss_dssp THHHH
T ss_pred hhhcC
Confidence 88764
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.57 E-value=0.00064 Score=68.94 Aligned_cols=255 Identities=6% Similarity=-0.071 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011598 34 LVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWAVTTSVDFSLAQMIQVIIL 113 (482)
Q Consensus 34 ~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (482)
++++.+++.++........+.++.+.-. ......|.. ||+..+.+......+......+......++.+..++.
T Consensus 61 a~lai~lG~li~~~~~~l~~~~G~~~Gl--~~~v~~R~~----FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~ 134 (501)
T 2jln_A 61 VIVAIAAGCTIAVILLFFTQSAAIRWGI--NFTVAARMP----FGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITR 134 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHCC--CHHHHTTTT----SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhcCC--ChhhhhHhh----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555655554444455566665532 366688888 7777777766666655555555555555666655543
Q ss_pred HhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccceecc
Q 011598 114 LSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFN 193 (482)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 193 (482)
.. +..++ ..+..+++.++...+.+.|.|...+++++.....++..+.+.+..+...+. ...+. .+ ..
T Consensus 135 ~~--------~g~~~--~~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~-~~~~~-~~-~~ 201 (501)
T 2jln_A 135 LL--------TGFTN--LPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADV-SLGEV-MS-MG 201 (501)
T ss_dssp HH--------HCCCC--HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CHHHH-TT-CC
T ss_pred Hh--------cCcch--HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchhh-hc-cC
Confidence 21 00111 122223345566777899999999999999888877776666555433221 00000 00 00
Q ss_pred ccCCCCCCcchhhHHHhhHh-HhHhhhcccccchhhhhccccccc-----------cchHHHHHHHHHHHHHHHHHHHHH
Q 011598 194 SDNGDGINSKVYIFVLGLLM-SQYTLTGYDASAHMTEETKNADRN-----------GPKGIISAIGISIIFGWGYILGIT 261 (482)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~-~~~a~~G~e~~~~~~~E~k~P~k~-----------ip~ai~~~~~~~~~~y~l~~~~~~ 261 (482)
+ .. ..+++..++.. ..+...+....+.++.+.|++++. .-.+..++..+...+..+......
T Consensus 202 ~--~~----~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~ 275 (501)
T 2jln_A 202 G--EN----PGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASM 275 (501)
T ss_dssp C--SS----CCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--cc----chHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01 01224443332 122223335577888999886541 333333333333322222222111
Q ss_pred hccCCccccccCCCCCCCCcHHHHHHHHhcCCCCCCchhHHHH-HHHHHHHHHHhhh-hhhhhhhhhhhh
Q 011598 262 FAVTSIPNLLSEDNDAGGYAIAEIFYLAFKNRFGSGVGGIVCL-GVVAVAIFFCGMS-SVTSNSRMAYAF 329 (482)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~-~~~~~sR~l~a~ 329 (482)
.. .... .|. +.+...+... ..+..+.. +.++++..++... ..++.+--+..+
T Consensus 276 ~~-------~~~~-----dp~-~~l~~~l~~~---~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 276 VL-------VGEW-----NPV-IAITEVVGGV---SIPMAILFQVFVLLATWSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp HH-------HSCS-----CHH-HHHHHHHTCC---CHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH
T ss_pred Hh-------cccc-----CHH-HHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 11 1111 343 3333333222 11255666 6777777777774 677777666665
No 5
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=98.24 E-value=0.00088 Score=67.54 Aligned_cols=122 Identities=11% Similarity=0.073 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccceeccccCCCCCCcchhhH
Q 011598 129 YVVIAFHGGILLLHAIINSLPI-SILSFFGQLAAAWNLVGVMVLMILIPSVSTERASAKFVFTHFNSDNGDGINSKVYIF 207 (482)
Q Consensus 129 ~~~~~i~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (482)
+...+.-++..++...+..+|+ |-.+|.+.++...-.+.++++.+-++...+..++...+.+.+..||-+... +...+
T Consensus 166 ~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~-~~~vw 244 (519)
T 2a65_A 166 LFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLK-DPGVW 244 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTT-CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhC-CHHHH
Confidence 4444444555666777888999 778999888877766666666555543322110111122223333322232 12447
Q ss_pred HHhhHhHhHhh-hcccccchhhhhccccccccchHHHHHHHHHHHH
Q 011598 208 VLGLLMSQYTL-TGYDASAHMTEETKNADRNGPKGIISAIGISIIF 252 (482)
Q Consensus 208 ~~~~~~~~~a~-~G~e~~~~~~~E~k~P~k~ip~ai~~~~~~~~~~ 252 (482)
..+...++|++ .|+-....+++-.|+ +.|++|.-......-..+
T Consensus 245 ~~A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~ 289 (519)
T 2a65_A 245 IAAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKA 289 (519)
T ss_dssp HHHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHH
Confidence 88889999998 788888889988876 678888766555544443
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.91 E-value=0.014 Score=59.63 Aligned_cols=32 Identities=19% Similarity=-0.009 Sum_probs=23.1
Q ss_pred CCchhHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011598 296 SGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAY 327 (482)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 327 (482)
++++.-++...++.+.+++..+.+++.+-.+-
T Consensus 318 p~~l~Gl~~a~llAA~mST~ss~l~s~st~~~ 349 (530)
T 3dh4_A 318 PVGVKGVVFAALAAAIVSSLASMLNSTATIFT 349 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 35566677778888888888888777666543
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.52 E-value=0.036 Score=57.32 Aligned_cols=216 Identities=14% Similarity=0.085 Sum_probs=91.5
Q ss_pred HHHHhHhhhccccChhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhhhHHHhhcCCCCCcchhHHHHHHHHHHHHH-
Q 011598 17 GITTLYNTGLNFGGPISLVYGWLIAGAFTLFVGSSMAEICSSYPTSGGLYYWSAKLAGPKWAPFASWMTGWFNIVGQWA- 95 (482)
Q Consensus 17 gi~~~~~~~~~~~G~~~~~~~~ii~~l~~l~~a~~~ael~~~~p~~Gg~y~~~~~~~~~~~g~~~g~~~~~~~~~~~~~- 95 (482)
.....++.+.. .|-....+.|. ..+.....+..+...-++. +.-..+.|.++- ||+....+......+.+..
T Consensus 69 t~lG~~g~~y~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~R----fg~~~~~~~ai~~l~~~~~~ 141 (593)
T 2xq2_A 69 QFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKR----FNKKLKTILAVFWISLYIFV 141 (593)
T ss_dssp HHHHHHHHHHH-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHH----TCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHhHHHHH-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHH----ccCchHHHHHHHHHHHHHHH
Confidence 34455555555 44422333332 2222333444444444443 345788888888 7766665555444333222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011598 96 VTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAFHGGILLLHAIINSLPISILSFFGQLAAAWNLVGVMVLMILI 175 (482)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~ 175 (482)
..+......+..+..+++ .+.+...++ ..++.......-|.|...+...+=.+++++..+++.+..
T Consensus 142 ~~~~~l~~~~~~l~~~~G------------i~~~~~i~i--~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~~l~v~~~~ 207 (593)
T 2xq2_A 142 NLTSVLYLGGLALETILG------------IPLMYSILG--LALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMA 207 (593)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCHHHHHHH--HHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC------------ccHHHHHHH--HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233334444331 122222222 222233444455777766666666666665555544444
Q ss_pred hhccccccc----------c-cccceeccccCCCCCCc-chhhHHHh-hHhHhHhhhcccc-cchhhhhccccccccchH
Q 011598 176 PSVSTERAS----------A-KFVFTHFNSDNGDGINS-KVYIFVLG-LLMSQYTLTGYDA-SAHMTEETKNADRNGPKG 241 (482)
Q Consensus 176 ~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~a~~G~e~-~~~~~~E~k~P~k~ip~a 241 (482)
+...++... . +..++...++++..+.. ..+....+ .......+.|.+. ..+-.=+.|| +|+..|+
T Consensus 208 l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q~~~qR~laaks-~k~ar~~ 286 (593)
T 2xq2_A 208 VSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKS-VSEAQKG 286 (593)
T ss_dssp HHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTCSHHHHHHTTSC-HHHHHHH
T ss_pred HHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCChHHHHHhheeCC-HHHHHHH
Confidence 332221000 0 00011111111100000 01112211 2222334555553 4555667788 4788888
Q ss_pred HHHHHHHHHHHHH
Q 011598 242 IISAIGISIIFGW 254 (482)
Q Consensus 242 i~~~~~~~~~~y~ 254 (482)
..++.....++.+
T Consensus 287 ~~~~~~~~~~~~~ 299 (593)
T 2xq2_A 287 IVFAAFLALIVPF 299 (593)
T ss_dssp HHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877666544443
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=95.32 E-value=2.6 Score=41.96 Aligned_cols=105 Identities=8% Similarity=0.023 Sum_probs=59.3
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHHH
Q 011598 285 IFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFCM 364 (482)
Q Consensus 285 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i~ 364 (482)
..+..+++. | +..++....++....-..+..-+.+-++-.++.+|.-+ + .|| ..+.+..|....-....
T Consensus 398 alf~~l~~l---P-~~~i~~~l~iil~~~FfvTSaDS~s~vi~~~ss~g~~~--~----~~p-~~~~rifW~v~~g~va~ 466 (509)
T 2wsw_A 398 AIIETWAAL---P-LSTATMWGFFILCFIATVTLINACSYTLAMSTCRSMKE--G----ADP-PLLVRIGWSVLVGIIGI 466 (509)
T ss_dssp HHHHHHHTS---S-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCCCT--T----CCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC---C-hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcCCCCC--C----CCC-ChhHHHHHHHHHHHHHH
Confidence 344555554 2 55566666667777777778888888888888766322 1 111 23444444333322222
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011598 365 ALTYLGSAVAFQAMVSIATIGLYIAYALPIFFRVTL 400 (482)
Q Consensus 365 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 400 (482)
.++..+..+..+...-++..-..+...+.+.+.+|.
T Consensus 467 ~LL~~ggl~aLQ~~~ii~alPf~~v~l~~~~sl~k~ 502 (509)
T 2wsw_A 467 ILLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKD 502 (509)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 222233345666666666666666666666666654
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=92.13 E-value=5.5 Score=39.82 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=58.1
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccCCCCCccccceecCCCCchHHHHHHHHHHHHH
Q 011598 284 EIFYLAFKNRFGSGVGGIVCLGVVAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSFWHEVNSQDIPINAVWLSAFISFC 363 (482)
Q Consensus 284 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~f~~~~~~~~P~~ai~~~~~i~~i 363 (482)
...+..+++. | +..++....++..+.-..+..-+.+-++-.++.+|.. +| ..+.+..|....-.+.
T Consensus 398 ~alf~~l~~l---P-~~~i~~~l~iili~~FfvTSaDS~s~vl~~~ss~g~~---------~p-~~~~rifWgv~~g~va 463 (539)
T 4ain_A 398 EQLFGLLHAL---P-GGQIMGIIAMILLGTFFITSADSASTVMGTMSQHGQL---------EA-NKWVTAAWGVATAAIG 463 (539)
T ss_dssp HHHHHHHHTS---T-THHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHTTTCS---------SC-CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHC---c-hHHHHHHHHHHHHHHHHHHccchHHHHHHHHHcCCCC---------CC-CcchhhHHHHHHHHHH
Confidence 4455666665 2 5556666666666666777777777787777765421 11 2344444444333333
Q ss_pred HHHhhhch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011598 364 MALTYLGS---AVAFQAMVSIATIGLYIAYALPIFFRVTLA 401 (482)
Q Consensus 364 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r 401 (482)
..++..+. .+..+...-++..-..+...+.+.+.+|--
T Consensus 464 ~~LL~~GG~~~L~aLQt~~ii~alPf~~v~llm~~sl~k~l 504 (539)
T 4ain_A 464 LTLLLSGGDNALSNLQNVTIVAATPFLFVVIGLMFALVKDL 504 (539)
T ss_dssp HHHTTC-----CHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333333 355666666666666666666777766553
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=60.01 E-value=5.9 Score=24.73 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=5.7
Q ss_pred Hhhhheeeeccccc
Q 011598 460 LTVSAWIFSARHWF 473 (482)
Q Consensus 460 ~~~~~~~~~~r~~~ 473 (482)
+.+.+|++.|||+.
T Consensus 27 i~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 27 VALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHhhhhHh
Confidence 33443444444443
No 11
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=46.30 E-value=29 Score=31.98 Aligned_cols=30 Identities=3% Similarity=-0.136 Sum_probs=17.1
Q ss_pred HHHHHHHhccccCCCCCccccchhhHHHHH
Q 011598 393 PIFFRVTLARKSFIPGPFNLGRYGIVVGWI 422 (482)
Q Consensus 393 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 422 (482)
..++...-+|+.+++.||-..|.....+.+
T Consensus 58 ~l~~~~~s~k~~d~~~pyG~~R~E~l~al~ 87 (306)
T 3j1z_P 58 NFIAIRYAIVPADHDHRYGHGKAEPLAALA 87 (306)
T ss_dssp HHHHHHHHTSCCCCTTSSCCTTHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCCCchhhHHHHHHHH
Confidence 334444555666777888776654444443
No 12
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=44.30 E-value=7.3 Score=24.29 Aligned_cols=8 Identities=13% Similarity=0.210 Sum_probs=3.0
Q ss_pred eeeecccc
Q 011598 465 WIFSARHW 472 (482)
Q Consensus 465 ~~~~~r~~ 472 (482)
|++.|||+
T Consensus 31 ~~~~RRRr 38 (44)
T 2l2t_A 31 AVYVRRKS 38 (44)
T ss_dssp HHHHHTTC
T ss_pred HHHhhhhh
Confidence 33333333
No 13
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=43.94 E-value=47 Score=30.06 Aligned_cols=33 Identities=6% Similarity=-0.048 Sum_probs=18.9
Q ss_pred HHHHHHHHhccccCCCCCccccchhhHHHHHHH
Q 011598 392 LPIFFRVTLARKSFIPGPFNLGRYGIVVGWIAV 424 (482)
Q Consensus 392 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 424 (482)
+..++...-+|+.++++||-..|.....+.+..
T Consensus 48 ~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~ 80 (283)
T 3h90_A 48 TNLLVVRYSLQPADDNHSFGHGKAESLAALAQS 80 (283)
T ss_dssp HHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHH
Confidence 344444445566677788877765555444333
No 14
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=24.08 E-value=3.2e+02 Score=22.86 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=5.5
Q ss_pred chHHHHHHHH
Q 011598 349 IPINAVWLSA 358 (482)
Q Consensus 349 ~P~~ai~~~~ 358 (482)
.|+++.+...
T Consensus 24 n~v~s~l~Li 33 (184)
T 3rko_J 24 NPVHALLYLI 33 (184)
T ss_dssp SHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 4776655433
No 15
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=22.66 E-value=46 Score=21.69 Aligned_cols=8 Identities=13% Similarity=0.314 Sum_probs=2.5
Q ss_pred ccccCCCC
Q 011598 474 KGPITNIA 481 (482)
Q Consensus 474 ~~~~~~~~ 481 (482)
+....++|
T Consensus 41 ~~~~~~~~ 48 (54)
T 2l8s_A 41 KKKMEKLE 48 (54)
T ss_dssp SCCCCC--
T ss_pred cchhhHHh
Confidence 33444443
Done!