BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011599
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 268 bits (686), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 136/264 (51%), Positives = 178/264 (67%), Gaps = 12/264 (4%)
Query: 43 VTKEEEEADRIASLPGQPKVSFQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLN 102
V ADRIA LPGQP V F +SGY+ V++ GR+LFY L EA + PLV+WLN
Sbjct: 1 VEPSGHAADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLN 60
Query: 103 GGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSD 162
GGPGCSSVAYGASEE+G FR+ +GL LN+ WN AN+LFL++PAGVGFSYTN SSD
Sbjct: 61 GGPGCSSVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSD 120
Query: 163 LLD-----TAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKH 217
+ TA DS FL +W +RFP YK R+ Y+ GESYAGHYVP+L++ ++H +SK+
Sbjct: 121 IYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQ--LVH--RSKN 176
Query: 218 P-INLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYQQLINTCDFRR-QKESDECES 275
P INLKG MVGN + D+Y+D +GT +WW+H ++SD TY++L C S C++
Sbjct: 177 PVINLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDA 236
Query: 276 LYTYAMDQEFGNIDQYNIYAAPCN 299
A ++ GNID Y++Y CN
Sbjct: 237 ATDVATAEQ-GNIDMYSLYTPVCN 259
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 268 bits (684), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 136/264 (51%), Positives = 178/264 (67%), Gaps = 12/264 (4%)
Query: 43 VTKEEEEADRIASLPGQPKVSFQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLN 102
V ADRIA LPGQP V F +SGY+ V++ GR+LFY L EA + PLV+WLN
Sbjct: 1 VEPSGHAADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLN 60
Query: 103 GGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSD 162
GGPGCSSVAYGASEE+G FR+ +GL LN+ WN AN+LFL++PAGVGFSYTN SSD
Sbjct: 61 GGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSD 120
Query: 163 LLD-----TAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKH 217
+ TA DS FL +W +RFP YK R+ Y+ GESYAGHYVP+L++ ++H +SK+
Sbjct: 121 IYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQ--LVH--RSKN 176
Query: 218 P-INLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYQQLINTCDFRR-QKESDECES 275
P INLKG MVGN + D+Y+D +GT +WW+H ++SD TY++L C S C++
Sbjct: 177 PVINLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDA 236
Query: 276 LYTYAMDQEFGNIDQYNIYAAPCN 299
A ++ GNID Y++Y CN
Sbjct: 237 ATDVATAEQ-GNIDMYSLYTPVCN 259
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 267 bits (683), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 135/257 (52%), Positives = 177/257 (68%), Gaps = 12/257 (4%)
Query: 50 ADRIASLPGQPKVSFQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSS 109
ADRIA LPGQP V F +SGY+ V++ GR+LFY L EA + PLV+WLNGGPGCSS
Sbjct: 3 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 62
Query: 110 VAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLD---- 165
VAYGASEE+G FR+ +GL LN+ WN AN+LFL++PAGVGFSYTN SSD+
Sbjct: 63 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 122
Query: 166 -TAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHP-INLKG 223
TA DS FL +W +RFP YK R+ Y+ GESYAGHYVP+L++ ++H +SK+P INLKG
Sbjct: 123 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQ--LVH--RSKNPVINLKG 178
Query: 224 IMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYQQLINTCDFRR-QKESDECESLYTYAMD 282
MVGN + D+Y+D +GT +WW+H ++SD TY++L C S C++ A
Sbjct: 179 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA 238
Query: 283 QEFGNIDQYNIYAAPCN 299
++ GNID Y++Y CN
Sbjct: 239 EQ-GNIDMYSLYTPVCN 254
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 267 bits (683), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 135/257 (52%), Positives = 177/257 (68%), Gaps = 12/257 (4%)
Query: 50 ADRIASLPGQPKVSFQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSS 109
ADRIA LPGQP V F +SGY+ V++ GR+LFY L EA + PLV+WLNGGPGCSS
Sbjct: 4 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 63
Query: 110 VAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLD---- 165
VAYGASEE+G FR+ +GL LN+ WN AN+LFL++PAGVGFSYTN SSD+
Sbjct: 64 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 123
Query: 166 -TAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHP-INLKG 223
TA DS FL +W +RFP YK R+ Y+ GESYAGHYVP+L++ ++H +SK+P INLKG
Sbjct: 124 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQ--LVH--RSKNPVINLKG 179
Query: 224 IMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYQQLINTCDFRR-QKESDECESLYTYAMD 282
MVGN + D+Y+D +GT +WW+H ++SD TY++L C S C++ A
Sbjct: 180 FMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATA 239
Query: 283 QEFGNIDQYNIYAAPCN 299
++ GNID Y++Y CN
Sbjct: 240 EQ-GNIDMYSLYTPVCN 255
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 161/261 (61%), Gaps = 11/261 (4%)
Query: 46 EEEEADRIASLPGQPK-VSFQQFSGYVPVNKVPGRALFYWLTEATHNPLNKP-LVVWLNG 103
+++E DRI LPGQP V+F + GYV ++ GRAL+YW EA LV+WLNG
Sbjct: 3 QQQEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNG 62
Query: 104 GPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDL 163
GPGCSS+ GA +E+G FR++ L LN+ +WN AN+LF E+PAGVGFSY+N SSDL
Sbjct: 63 GPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDL 122
Query: 164 L----DTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPI 219
A+D+ FL++W +RFP Y RE Y+ GES GH++PQL+ +++ N + I
Sbjct: 123 SMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLS-QVVYRNRNNSPFI 179
Query: 220 NLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYQQLINTC-DFRRQKESDECESLYT 278
N +G++V + +T+++ D +G WW H +ISD+T + C + EC ++
Sbjct: 180 NFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTEVWN 239
Query: 279 YAMDQEFGNIDQYNIYAAPCN 299
A+ ++ GNI+ Y IY C+
Sbjct: 240 KALAEQ-GNINPYTIYTPTCD 259
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 145/464 (31%), Positives = 238/464 (51%), Gaps = 48/464 (10%)
Query: 46 EEEEADRIASLPGQPKVSFQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGP 105
+++E R+ L QP SF+Q+SGY+ + + L YW E+ +P N P+V+WLNGGP
Sbjct: 3 DQDEIQRLPGLAKQP--SFRQYSGYLKSSG--SKHLHYWFVESQKDPENSPVVLWLNGGP 58
Query: 106 GCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNR---SSD 162
GCSS+ G E GPF + L N SWN AN+L+LE+PAGVGFSY++ +++
Sbjct: 59 GCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATN 117
Query: 163 LLDTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLK 222
+ A+ + + L + FP YK +++LTGESYAG Y+P LA +M S +NL+
Sbjct: 118 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS-----MNLQ 172
Query: 223 GIMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYQQL------INTCDFRRQKESDECESL 276
G+ VGN ++ ++ V + + H ++ ++ + L N C+F K+ + +L
Sbjct: 173 GLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNL 232
Query: 277 YTYAMDQEFGNIDQYNIYAAPCNNSDGSAAATRH-------------LMRLPHRPHNYKT 323
A ++ YN+Y APC + G + R+ RLP + ++
Sbjct: 233 QEVARIVGNSGLNIYNLY-APC--AGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQA 289
Query: 324 LRR----ISGYDPCTEKY-AEIYYNRPDVQKALHANKTKIPYKWTACSEVLNRNWNDTDV 378
L R + PCT A Y N P V+KAL+ + ++P +W C+ ++N +
Sbjct: 290 LLRSGDKVRMDPPCTNTTAASTYLNNPYVRKALNIPE-QLP-QWDMCNFLVNLQYRRLYR 347
Query: 379 SVLPIYRKMIAG-GLRVWVFSGDVDSVVPVTATRYSLAQLKLTTKIPWYPWYVK-----K 432
S+ Y K+++ ++ +++GDVD + + L ++ PW VK +
Sbjct: 348 SMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGE 407
Query: 433 QVGGWTEVYEGLTFATVRGAGHEVPLFKPRAALQLFKSFLRGDP 476
Q+ G+ + + + F T++GAGH VP KP AA +F FL P
Sbjct: 408 QIAGFVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 451
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 116/150 (77%), Gaps = 1/150 (0%)
Query: 330 YDPCTEKYAEIYYNRPDVQKALHANKT-KIPYKWTACSEVLNRNWNDTDVSVLPIYRKMI 388
YDPCTE+Y+ YYNR DVQ ALHAN T + Y W CS+ +N +W+D S+LPIYR++I
Sbjct: 4 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 63
Query: 389 AGGLRVWVFSGDVDSVVPVTATRYSLAQLKLTTKIPWYPWYVKKQVGGWTEVYEGLTFAT 448
A GLR+WVFSGD D+VVP+TATRYS+ L L T WYPWY ++VGGW++VY+GLT +
Sbjct: 64 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 123
Query: 449 VRGAGHEVPLFKPRAALQLFKSFLRGDPLP 478
VRGAGHEVPL +PR AL LF+ FL+G P+P
Sbjct: 124 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 153
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 205 bits (521), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 116/150 (77%), Gaps = 1/150 (0%)
Query: 330 YDPCTEKYAEIYYNRPDVQKALHANKT-KIPYKWTACSEVLNRNWNDTDVSVLPIYRKMI 388
YDPCTE+Y+ YYNR DVQ ALHAN T + Y W CS+ +N +W+D S+LPIYR++I
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 389 AGGLRVWVFSGDVDSVVPVTATRYSLAQLKLTTKIPWYPWYVKKQVGGWTEVYEGLTFAT 448
A GLR+WVFSGD D+VVP+TATRYS+ L L T WYPWY ++VGGW++VY+GLT +
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 449 VRGAGHEVPLFKPRAALQLFKSFLRGDPLP 478
VRGAGHEVPL +PR AL LF+ FL+G P+P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 205 bits (521), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 116/150 (77%), Gaps = 1/150 (0%)
Query: 330 YDPCTEKYAEIYYNRPDVQKALHANKT-KIPYKWTACSEVLNRNWNDTDVSVLPIYRKMI 388
YDPCTE+Y+ YYNR DVQ ALHAN T + Y W CS+ +N +W+D S+LPIYR++I
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 389 AGGLRVWVFSGDVDSVVPVTATRYSLAQLKLTTKIPWYPWYVKKQVGGWTEVYEGLTFAT 448
A GLR+WVFSGD D+VVP+TATRYS+ L L T WYPWY ++VGGW++VY+GLT +
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 449 VRGAGHEVPLFKPRAALQLFKSFLRGDPLP 478
VRGAGHEVPL +PR AL LF+ FL+G P+P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 205 bits (521), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 116/150 (77%), Gaps = 1/150 (0%)
Query: 330 YDPCTEKYAEIYYNRPDVQKALHANKT-KIPYKWTACSEVLNRNWNDTDVSVLPIYRKMI 388
YDPCTE+Y+ YYNR DVQ ALHAN T + Y W CS+ +N +W+D S+LPIYR++I
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 389 AGGLRVWVFSGDVDSVVPVTATRYSLAQLKLTTKIPWYPWYVKKQVGGWTEVYEGLTFAT 448
A GLR+WVFSGD D+VVP+TATRYS+ L L T WYPWY ++VGGW++VY+GLT +
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLVS 121
Query: 449 VRGAGHEVPLFKPRAALQLFKSFLRGDPLP 478
VRGAGHEVPL +PR AL LF+ FL+G P+P
Sbjct: 122 VRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 105/153 (68%), Gaps = 4/153 (2%)
Query: 330 YDPCTEKYAEIYYNRPDVQKALHANKTKI-PYKWTACSEVLNRNWNDTDVSVLPIYRKMI 388
YDPC + Y N P+VQ ALHAN + I Y WT CS + W +LP+YR++I
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELI 63
Query: 389 AGGLRVWVFSGDVDSVVPVTATRYSLAQLKLTTKIPWYPWYV---KKQVGGWTEVYEGLT 445
GLRVWV+SGD DSVVPV++TR SLA L+L K WYPWY+ +++VGGW+ YEGLT
Sbjct: 64 QAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEGLT 123
Query: 446 FATVRGAGHEVPLFKPRAALQLFKSFLRGDPLP 478
+ TVRGAGH VP+ +P A LFK FL+G+P+P
Sbjct: 124 YVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMP 156
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 147/262 (56%), Gaps = 20/262 (7%)
Query: 46 EEEEADRIASLPGQPKVSFQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGP 105
+++E R+ L QP SF+Q+SGY+ + + L YW E+ +P N P+V+WLNGGP
Sbjct: 5 DQDEIQRLPGLAKQP--SFRQYSGYLKGSG--SKHLHYWFVESQKDPENSPVVLWLNGGP 60
Query: 106 GCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNR---SSD 162
GCSS+ G E GPF + L N SWN AN+L+LE+PAGVGFSY++ +++
Sbjct: 61 GCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATN 119
Query: 163 LLDTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLK 222
+ A+ + + L + FP YK +++LTGESYAG Y+P LA +M S +NL+
Sbjct: 120 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS-----MNLQ 174
Query: 223 GIMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYQQL------INTCDFRRQKESDECESL 276
G+ VGN ++ ++ V + + H ++ ++ + L N C+F K+ + +L
Sbjct: 175 GLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNL 234
Query: 277 YTYAMDQEFGNIDQYNIYAAPC 298
A ++ YN+Y APC
Sbjct: 235 QEVARIVGNSGLNIYNLY-APC 255
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 119/437 (27%), Positives = 195/437 (44%), Gaps = 63/437 (14%)
Query: 66 QFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINK 125
Q++GY+ V + F+W E+ ++P P+++WLNGGPGCSS+ G E+GP I
Sbjct: 16 QYTGYLDVED-EDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFELGPSSIGP 73
Query: 126 TASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRS--SDLLDTAKDSLQFLIRWIDRFPR 183
+ N SWN+ A ++FL+ P VGFSY+ S S+ + KD FL + D+FP
Sbjct: 74 DLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYNFLELFFDQFPE 132
Query: 184 Y--KGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTD-----NYYD 236
Y KG++ ++ GESYAGHY+P A EI+ H ++ NL +++GN +TD NYY+
Sbjct: 133 YVNKGQDFHIAGESYAGHYIPVFASEILSHKDRN---FNLTSVLIGNGLTDPLTQYNYYE 189
Query: 237 NLGTVTYWWSHAMISDKTYQQLINTCDFRRQKESDECESLYTYAMD-QEFGNIDQYNIYA 295
+ + S++ + + C L D Q + IY
Sbjct: 190 PMACGEGGEPSVLPSEECSAM---------EDSLERCLGLIESCYDSQSVWSCVPATIY- 239
Query: 296 APCNNSDGSAAATRHLMRLPHRPHNYKTLRRISGYDPCTEKYAEI--YYNRPDVQKALHA 353
CNN+ A + R + Y + G + C +I Y N+ V++A+ A
Sbjct: 240 --CNNA--QLAPYQRTGR-----NVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGA 290
Query: 354 NKTKIPYKWTACSEVLNRNWNDTDVSVLPIY---RKMIAGGLRVWVFSGDVDSVVPVTAT 410
+ +C+ +NRN+ + P + ++ L + V++GD D +
Sbjct: 291 EVD----HYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNW--- 343
Query: 411 RYSLAQLKLTTKIPW-------------YPWYVKKQVGGWTEVYEGLTFATVRGAGHEVP 457
L T +PW + + +V G + Y+ T+ V GH VP
Sbjct: 344 ---LGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVP 400
Query: 458 LFKPRAALQLFKSFLRG 474
P AL + ++ G
Sbjct: 401 FDVPENALSMVNEWIHG 417
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 121/442 (27%), Positives = 197/442 (44%), Gaps = 61/442 (13%)
Query: 65 QQFSGYVPV-----NKVPGRALFYWLTEATHNPLN----KPLVVWLNGGPGCSSVAYGAS 115
Q +G++P+ ++ L Y+ + T+N N +PL++WLNGGPGCSS+ GA
Sbjct: 28 QMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMD-GAL 86
Query: 116 EEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNR-----------SSDLL 164
E GPFR+N LYLN+ SW ++ +LLF++ P G GFS DL
Sbjct: 87 VESGPFRVNSDGK-LYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLE 145
Query: 165 DTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSK---HPINL 221
D K + FL + FP R++ L+GESYAG Y+P A I+ HN SK +L
Sbjct: 146 DVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDL 205
Query: 222 KGIMVGNAVTDNYYDNLGTVTYWWSHAMI--SDKTYQQLIN---TCDFRRQKESDECESL 276
K +++GN D +L + + +I S+ ++ L N C S + +
Sbjct: 206 KALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHENCQNLINSASTDEAAH 265
Query: 277 YTYAMDQEFGNIDQYNIYAAPCNNSDGSAAATRHLMRLPHRPHNYKTLRRISGYD-PCTE 335
++Y QE NI N+ + S S T + + + N K G + P
Sbjct: 266 FSY---QECENI--LNLLLSYTRES--SQKGTADCLNMYN--FNLKDSYPSCGMNWPKDI 316
Query: 336 KYAEIYYNRPDVQKALHANKTKIPYKWTACSEVLNRNWND----TDVSVLPIYRKMIAGG 391
+ +++ P V +LH + KI + W C+ + ++ + +LP ++ G
Sbjct: 317 SFVSKFFSTPGVIDSLHLDSDKIDH-WKECTNSVGTKLSNPISKPSIHLLP---GLLESG 372
Query: 392 LRVWVFSGDVDSVVPVTATRYSLAQLK------LTTKIPWYPWYVKKQVGGWTEVYEG-- 443
+ + +F+GD D + ++ LK + + W K + +E + G
Sbjct: 373 IEIVLFNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYV 432
Query: 444 -----LTFATVRGAGHEVPLFK 460
LTF +V A H VP K
Sbjct: 433 KYDRNLTFVSVYNASHMVPFDK 454
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 117/437 (26%), Positives = 193/437 (44%), Gaps = 63/437 (14%)
Query: 66 QFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINK 125
Q++GY+ V + F+W E+ ++P P+++WLNGGPGCSS+ G +GP I
Sbjct: 16 QYTGYLDVED-EDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFALGPSSIGP 73
Query: 126 TASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRS--SDLLDTAKDSLQFLIRWIDRFPR 183
+ N SWN+ A ++FL+ P VGFSY+ S S+ + KD FL + D+FP
Sbjct: 74 DLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYNFLELFFDQFPE 132
Query: 184 Y--KGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTD-----NYYD 236
Y KG++ ++ G SYAGHY+P A EI+ H ++ NL +++GN +TD NYY+
Sbjct: 133 YVNKGQDFHIAGASYAGHYIPVFASEILSHKDRN---FNLTSVLIGNGLTDPLTQYNYYE 189
Query: 237 NLGTVTYWWSHAMISDKTYQQLINTCDFRRQKESDECESLYTYAMD-QEFGNIDQYNIYA 295
+ + S++ + + C L D Q + IY
Sbjct: 190 PMACGEGGEPSVLPSEECSAM---------EDSLERCLGLIESCYDSQSVWSCVPATIY- 239
Query: 296 APCNNSDGSAAATRHLMRLPHRPHNYKTLRRISGYDPCTEKYAEI--YYNRPDVQKALHA 353
CNN+ A + R + Y + G + C +I Y N+ V++A+ A
Sbjct: 240 --CNNA--QLAPYQRTGR-----NVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGA 290
Query: 354 NKTKIPYKWTACSEVLNRNWNDTDVSVLPIY---RKMIAGGLRVWVFSGDVDSVVPVTAT 410
+ +C+ +NRN+ + P + ++ L + V++GD D +
Sbjct: 291 EVD----HYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNW--- 343
Query: 411 RYSLAQLKLTTKIPW-------------YPWYVKKQVGGWTEVYEGLTFATVRGAGHEVP 457
L T +PW + + +V G + Y+ T+ V GH VP
Sbjct: 344 ---LGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVP 400
Query: 458 LFKPRAALQLFKSFLRG 474
P AL + ++ G
Sbjct: 401 FDVPENALSMVNEWIHG 417
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 9/152 (5%)
Query: 332 PCTEKYA-EIYYNRPDVQKALHANKTKIPYKWTACSEVLNRNWNDTDVSVLPIYRKMIAG 390
PCT A Y N P V+KAL+ + ++P +W C+ ++N + S+ Y K+++
Sbjct: 4 PCTNTTAASTYLNNPYVRKALNIPE-QLP-QWDMCNFLVNLQYRRLYRSMNSQYLKLLSS 61
Query: 391 -GLRVWVFSGDVDSVVPVTATRYSLAQLKLTTKIPWYPWYVK-----KQVGGWTEVYEGL 444
++ +++GDVD + + L ++ PW VK +Q+ G+ + + +
Sbjct: 62 QKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHI 121
Query: 445 TFATVRGAGHEVPLFKPRAALQLFKSFLRGDP 476
F T++GAGH VP KP AA +F FL P
Sbjct: 122 AFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 153
>pdb|3RBY|A Chain A, Crystal Structure Of Uncharacterized Protein Ylr301w From
Saccharomycces Cerevisiae
pdb|3RBY|B Chain B, Crystal Structure Of Uncharacterized Protein Ylr301w From
Saccharomycces Cerevisiae
Length = 245
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 202 PQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYQQLINT 261
P +++ + K N + I++ VTD YD L V W +S K I
Sbjct: 135 PSREDLVIVSPNNEKFSSNARSIVL--KVTDEAYDGLVIVIGRWIQGFLSQKN-NNTIEG 191
Query: 262 CDFRRQKESDECESLYTYAMDQEFGNIDQ 290
+F R E D +S + + +E I Q
Sbjct: 192 LNFIRLLEKDSGKSEFLLSYGKEVNKIPQ 220
>pdb|3EA6|A Chain A, Atomic Resolution Of Crystal Structure Of Sek
Length = 219
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 147 ETPAGVGFSYTNRSSDLLDTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGH 199
+TP ++N S DL+ +KD ++F +KG+++ + G SY G
Sbjct: 28 DTPIANQLQFSNESYDLISESKD--------FNKFSNFKGKKLDVFGISYNGQ 72
>pdb|2NTS|A Chain A, Crystal Structure Of Sek-Hvb5.1
pdb|2NTT|A Chain A, Crystal Structure Of Sek
pdb|2NTT|B Chain B, Crystal Structure Of Sek
Length = 217
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 147 ETPAGVGFSYTNRSSDLLDTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGH 199
+TP ++N S DL+ +KD ++F +KG+++ + G SY G
Sbjct: 28 DTPIANQLQFSNESYDLISESKD--------FNKFSNFKGKKLDVFGISYNGQ 72
>pdb|2J88|H Chain H, Hyaluronidase In Complex With A Monoclonal Igg Fab
Fragment
Length = 191
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 175 IRWIDRFPRYKGRE----VYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 230
+ WI R P KG E +Y + Y P L + I S++ + LK V A
Sbjct: 36 VSWI-RQPSGKGLEWLAHIYWDDDK---RYNPSLKSRLTISKDTSRNQVFLKITSVDTAD 91
Query: 231 TDNYYDNL--GTVTYW 244
T YY L G+V YW
Sbjct: 92 TATYYCTLYYGSVDYW 107
>pdb|2JIX|D Chain D, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
pdb|2JIX|F Chain F, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
pdb|2JIX|H Chain H, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
Length = 217
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 177 WIDRFPRYKGRE--VYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 234
WI R P KG E Y+ GE + +Y P L + I SK+ +LK V A T Y
Sbjct: 36 WI-RQPPGKGLEWIGYIGGEG-STNYNPSLKSRVTISVDTSKNQFSLKLRSVTAADTAVY 93
Query: 235 Y---DNLGTVTYWWSHAMIS 251
Y + LG YW +++
Sbjct: 94 YCARERLGIGDYWGQGTLVT 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,840,140
Number of Sequences: 62578
Number of extensions: 631884
Number of successful extensions: 1485
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1417
Number of HSP's gapped (non-prelim): 32
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)