Query 011600
Match_columns 481
No_of_seqs 336 out of 1759
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:10:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 5.2E-76 1.1E-80 614.4 42.8 394 57-481 21-429 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 7.9E-59 1.7E-63 481.8 37.1 337 134-481 41-397 (398)
3 cd05472 cnd41_like Chloroplast 100.0 9.4E-59 2E-63 464.0 33.7 295 139-480 1-299 (299)
4 cd05489 xylanase_inhibitor_I_l 100.0 4.7E-58 1E-62 469.2 32.7 318 146-478 2-361 (362)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.3E-54 2.9E-59 439.2 31.3 292 138-481 2-326 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 1.6E-53 3.6E-58 429.6 31.9 295 134-477 5-317 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 8.2E-53 1.8E-57 426.0 31.8 297 135-477 2-325 (325)
8 cd05477 gastricsin Gastricsins 100.0 4E-52 8.7E-57 419.7 33.0 295 137-478 1-318 (318)
9 cd05486 Cathespin_E Cathepsin 100.0 1.6E-52 3.5E-57 422.3 29.3 291 140-477 1-316 (316)
10 cd05488 Proteinase_A_fungi Fun 100.0 5.4E-52 1.2E-56 419.1 31.3 295 134-477 5-320 (320)
11 PTZ00165 aspartyl protease; Pr 100.0 1.4E-51 3E-56 433.2 33.2 307 125-481 109-449 (482)
12 cd05487 renin_like Renin stimu 100.0 1.2E-51 2.5E-56 417.7 31.4 296 134-478 3-326 (326)
13 cd06098 phytepsin Phytepsin, a 100.0 4E-51 8.7E-56 412.2 31.5 287 134-477 5-317 (317)
14 cd05485 Cathepsin_D_like Cathe 100.0 5.5E-51 1.2E-55 413.2 31.2 297 134-477 6-329 (329)
15 cd05473 beta_secretase_like Be 100.0 4.1E-51 8.9E-56 419.8 29.9 307 139-481 3-348 (364)
16 cd05475 nucellin_like Nucellin 100.0 3.1E-50 6.7E-55 397.4 29.4 256 138-480 1-273 (273)
17 PTZ00147 plasmepsin-1; Provisi 100.0 3.7E-49 8.1E-54 411.9 34.6 301 125-479 128-450 (453)
18 cd05476 pepsin_A_like_plant Ch 100.0 1.4E-49 3E-54 391.1 29.3 253 139-480 1-265 (265)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.2E-48 2.7E-53 407.2 34.6 301 125-479 127-449 (450)
20 cd06097 Aspergillopepsin_like 100.0 6.5E-47 1.4E-51 374.7 27.4 261 140-477 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 8.1E-46 1.8E-50 369.5 29.1 269 139-478 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 1.5E-44 3.2E-49 363.2 24.9 295 139-478 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 1.1E-43 2.4E-48 350.8 29.1 264 140-477 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 8.3E-34 1.8E-38 258.9 14.3 159 140-309 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 100.0 8.1E-29 1.8E-33 225.5 15.5 149 329-477 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 3.7E-23 8E-28 175.6 12.2 105 142-272 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.7 0.00015 3.2E-09 59.1 7.3 93 139-274 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.4 0.097 2.1E-06 45.1 8.6 96 136-274 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 95.0 0.18 3.8E-06 40.2 8.4 89 142-273 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 93.6 0.29 6.2E-06 42.3 7.2 103 337-475 21-124 (124)
31 cd05484 retropepsin_like_LTR_2 88.9 0.46 1E-05 38.4 3.4 30 140-171 1-30 (91)
32 cd05479 RP_DDI RP_DDI; retrope 88.4 3.7 8.1E-05 35.3 9.0 31 137-169 14-44 (124)
33 PF08284 RVP_2: Retroviral asp 83.6 2.8 6.1E-05 36.8 5.8 28 451-478 105-132 (135)
34 TIGR03698 clan_AA_DTGF clan AA 83.0 2.9 6.2E-05 35.1 5.4 23 451-473 85-107 (107)
35 PF13975 gag-asp_proteas: gag- 81.0 2.8 6.1E-05 32.3 4.3 34 136-171 5-38 (72)
36 TIGR02281 clan_AA_DTGA clan AA 80.5 3.4 7.4E-05 35.5 5.1 36 327-375 9-44 (121)
37 PF11925 DUF3443: Protein of u 79.5 38 0.00082 34.7 12.7 178 141-370 25-272 (370)
38 PF13650 Asp_protease_2: Aspar 79.3 2.4 5.2E-05 33.4 3.6 29 337-375 3-31 (90)
39 cd05484 retropepsin_like_LTR_2 79.2 3.3 7.2E-05 33.3 4.4 30 336-375 4-33 (91)
40 COG3577 Predicted aspartyl pro 77.8 7.1 0.00015 36.5 6.5 79 136-253 102-180 (215)
41 cd05483 retropepsin_like_bacte 75.6 5.7 0.00012 31.5 4.9 29 337-375 7-35 (96)
42 PF00077 RVP: Retroviral aspar 75.5 4 8.7E-05 33.2 3.9 27 141-169 7-33 (100)
43 PF13975 gag-asp_proteas: gag- 74.6 7.7 0.00017 29.8 5.1 29 337-375 13-41 (72)
44 cd05482 HIV_retropepsin_like R 64.2 8.5 0.00018 31.1 3.4 25 143-169 2-26 (87)
45 cd06095 RP_RTVL_H_like Retrope 59.2 12 0.00027 29.7 3.6 29 337-375 3-31 (86)
46 cd06095 RP_RTVL_H_like Retrope 56.9 13 0.00028 29.6 3.2 26 143-170 2-27 (86)
47 PF12384 Peptidase_A2B: Ty3 tr 51.7 71 0.0015 29.0 7.3 21 356-376 48-68 (177)
48 PF00077 RVP: Retroviral aspar 50.5 12 0.00026 30.3 2.2 26 336-371 9-34 (100)
49 cd05481 retropepsin_like_LTR_1 44.0 27 0.00058 28.4 3.3 21 356-376 13-33 (93)
50 COG3577 Predicted aspartyl pro 38.4 70 0.0015 30.1 5.3 36 326-374 102-137 (215)
51 PF09668 Asp_protease: Asparty 34.9 49 0.0011 28.6 3.6 29 336-374 28-56 (124)
52 PF12384 Peptidase_A2B: Ty3 tr 29.7 68 0.0015 29.2 3.6 29 141-169 34-62 (177)
53 PRK13859 type IV secretion sys 29.4 28 0.00062 24.9 1.0 17 4-20 1-17 (55)
54 PRK14749 hypothetical protein; 27.2 32 0.0007 21.7 0.8 18 4-21 1-18 (30)
55 KOG0012 DNA damage inducible p 26.4 4.6E+02 0.01 26.9 9.2 106 335-478 238-346 (380)
56 COG5550 Predicted aspartyl pro 25.9 49 0.0011 28.5 2.0 24 450-473 94-117 (125)
57 PF09668 Asp_protease: Asparty 25.4 1.1E+02 0.0024 26.4 4.2 36 138-176 23-58 (124)
58 PF02160 Peptidase_A3: Caulifl 23.5 2.3E+02 0.0049 26.7 6.1 27 450-477 91-117 (201)
59 PF07172 GRP: Glycine rich pro 21.2 62 0.0013 26.6 1.7 17 1-17 1-17 (95)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=5.2e-76 Score=614.37 Aligned_cols=394 Identities=35% Similarity=0.642 Sum_probs=329.5
Q ss_pred CCCceEEEEEcccCCCCCCCCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHhhhccCCCCCcccccCCceeeccccCCccC
Q 011600 57 NAKKSSLKVVHKHGPCFKPYSNGEKAASPSPSVSHAEILRQDQSRVKSIHSRLSKNSGSLDEIRQSDDATLPAKDGSVVG 136 (481)
Q Consensus 57 ~~~~~~l~l~hr~~p~~sp~~~~~~~~~~~~~~~~~~~~~~d~~R~~~l~~r~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 136 (481)
++++++++|+||++|| ||++.+...+.+ .++++++|+++|+++|.++... ..|+..+...+
T Consensus 21 ~~~~~~~~l~h~~~~~-sp~~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~~~--------------~~~~~~~~~~~ 81 (431)
T PLN03146 21 PKGGFTVDLIHRDSPK-SPFYNPSETPSQ----RLRNAFRRSISRVNHFRPTDAS--------------PNDPQSDLISN 81 (431)
T ss_pred cCCceEEEEEeCCCCC-CCCCCCCCChhH----HHHHHHHHHHHHHHHHhhcccc--------------CCccccCcccC
Confidence 4477999999999999 998764444444 7888999999999888654211 12333343456
Q ss_pred ceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCCC
Q 011600 137 AGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACAS 216 (481)
Q Consensus 137 ~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~ 216 (481)
+++|+++|.||||||++.|++||||+++||||.+|. .|+.|..+.|||++|+||+.++|+++.|..+.. ...|..
T Consensus 82 ~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~-~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~----~~~c~~ 156 (431)
T PLN03146 82 GGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD-DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN----QASCSD 156 (431)
T ss_pred CccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc-ccccCCCCcccCCCCCCCcccCCCCcccccCCC----CCCCCC
Confidence 789999999999999999999999999999999996 599988899999999999999999999987653 234753
Q ss_pred -CCceeeEEcCCCCeEEEEEEEEEEEeCCC----cccCceEEEEEEecCCCCC-CcceeeecCCCCCchhhhhhhhcCCc
Q 011600 217 -STCLYGIQYGDSSFSIGFFGKETLTLTPR----DVFPNFLFGCGQNNRGLFG-GAAGLMGLGRDPISLVSQTATKYKKL 290 (481)
Q Consensus 217 -~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~----~~~~~~~FGc~~~~~g~~~-~~~GilGLg~~~~Sl~sQ~~~~~~~~ 290 (481)
+.|.|.+.|+||+.+.|++++|+|+|++. ..++++.|||++++.+.|. ..+||||||++++|+++|+...++++
T Consensus 157 ~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~ 236 (431)
T PLN03146 157 ENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGK 236 (431)
T ss_pred CCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCc
Confidence 56999999999998899999999999873 2588999999999888664 58999999999999999998766779
Q ss_pred eEEeccCCC---CCCceEEeCCCC---CCCceEeecccCCCCCccEEEEEeEEEEccEEeeecccccc---cCCeEEecc
Q 011600 291 FSYCLPSSA---SSTGHLTFGPGA---SKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFT---TAGTIIDSG 361 (481)
Q Consensus 291 FS~cL~~~~---~~~G~L~fGg~d---~~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~---~~~~iiDSG 361 (481)
|||||++.. ...|+|+||+.. ...+.||||+.+.. +.+|+|+|++|+||+++++++...|. .+++|||||
T Consensus 237 FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSG 315 (431)
T PLN03146 237 FSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSG 315 (431)
T ss_pred EEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCC
Confidence 999997632 247999999953 23589999986432 67999999999999999998877652 257999999
Q ss_pred CceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEEeCCCceEEE
Q 011600 362 TVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLA 441 (481)
Q Consensus 362 T~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~~~~~~Cla 441 (481)
|++|+||+++|++|+++|.+++...+.......++.||+... ...+|+|+|+| +|+++.|++++|+++...+.+|++
T Consensus 316 Tt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~~~~Cl~ 392 (431)
T PLN03146 316 TTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNTFVKVSEDLVCFA 392 (431)
T ss_pred ccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEE-CCCeeecCcceeEEEcCCCcEEEE
Confidence 999999999999999999999865443344445789998543 25789999999 589999999999998766789999
Q ss_pred EEeCCCCCCceeecHhhhceeEEEEECCCCEEEEEeCCCC
Q 011600 442 FAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS 481 (481)
Q Consensus 442 ~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 481 (481)
+.+. .+.+|||+.|||++||+||++++||||++++|+
T Consensus 393 ~~~~---~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~ 429 (431)
T PLN03146 393 MIPT---SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT 429 (431)
T ss_pred EecC---CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence 8865 236999999999999999999999999999995
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-59 Score=481.81 Aligned_cols=337 Identities=39% Similarity=0.720 Sum_probs=282.6
Q ss_pred ccCceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCC
Q 011600 134 VVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPA 213 (481)
Q Consensus 134 ~~~~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~ 213 (481)
....++|+++|.||||||+|.|++||||+++||+|.+|...|+.+..+.|||++||||+.+.|.++.|..... ..
T Consensus 41 ~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~-----~~ 115 (398)
T KOG1339|consen 41 SYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ-----SC 115 (398)
T ss_pred cccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCcccccccc-----Cc
Confidence 4456899999999999999999999999999999999963598876677999999999999999999998763 23
Q ss_pred CCCCCceeeEEcCCCCeEEEEEEEEEEEeCCC--cccCceEEEEEEecCCC-C--CCcceeeecCCCCCchhhhhhhhcC
Q 011600 214 CASSTCLYGIQYGDSSFSIGFFGKETLTLTPR--DVFPNFLFGCGQNNRGL-F--GGAAGLMGLGRDPISLVSQTATKYK 288 (481)
Q Consensus 214 C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~--~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl~sQ~~~~~~ 288 (481)
|.++.|.|.+.|+||+.+.|++++|+|+|++. ..++++.|||++.+.+. . ...+||||||++++|+.+|+...+.
T Consensus 116 ~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~ 195 (398)
T KOG1339|consen 116 SPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYN 195 (398)
T ss_pred ccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccC
Confidence 33678999999999888999999999999983 57778999999999763 2 3589999999999999999988754
Q ss_pred C--ceEEeccCCCC---CCceEEeCCCCC----CCceEeecccCCCCCccEEEEEeEEEEccEEeeeccccccc--CCeE
Q 011600 289 K--LFSYCLPSSAS---STGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTT--AGTI 357 (481)
Q Consensus 289 ~--~FS~cL~~~~~---~~G~L~fGg~d~----~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~~--~~~i 357 (481)
. +|||||.+... ..|.|+||+.+. +.+.|+||+.++. .+|.|+|.+|+|+++. .+++..|.. +++|
T Consensus 196 ~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~-~~~~~~~~~~~~~~i 272 (398)
T KOG1339|consen 196 AINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKR-PIGSSLFCTDGGGAI 272 (398)
T ss_pred CceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCcc-CCCcceEecCCCCEE
Confidence 3 49999998753 379999999774 4789999999553 6999999999999987 666666643 6899
Q ss_pred EeccCceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEEeCCCc
Q 011600 358 IDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQ 437 (481)
Q Consensus 358 iDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~~~~~ 437 (481)
|||||++|+||+++|++|.++|.+.+.. .......+..||...... ..+|.|+|+|.+|+++.|++++|+++.....
T Consensus 273 iDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~ 349 (398)
T KOG1339|consen 273 IDSGTSLTYLPTSAYNALREAIGAEVSV--VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYLVEVSDGG 349 (398)
T ss_pred EECCcceeeccHHHHHHHHHHHHhheec--cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccceEEEECCCC
Confidence 9999999999999999999999997411 111223345798765433 4599999999668999999999999876544
Q ss_pred e-EEEEEeCCCCCCceeecHhhhceeEEEEECC-CCEEEEEe--CCCC
Q 011600 438 V-CLAFAGNSDPTDVSIFGNTQQHTLEVVYDVA-GGKVGFAA--GGCS 481 (481)
Q Consensus 438 ~-Cla~~~~~~~~~~~IlG~~fl~~~~vvfD~~-~~rIGFa~--~~C~ 481 (481)
. |+++.........||||+.||++++++||.. ++||||++ ..|+
T Consensus 350 ~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 350 GVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 4 9987765333358999999999999999999 99999999 8885
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=9.4e-59 Score=464.04 Aligned_cols=295 Identities=57% Similarity=1.066 Sum_probs=255.7
Q ss_pred eEEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCCCCC
Q 011600 139 NYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASST 218 (481)
Q Consensus 139 ~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 218 (481)
+|+++|.||||||++.|++||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 599999999999999999999999999988765
Q ss_pred ceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCCCCCCcceeeecCCCCCchhhhhhhhcCCceEEeccCC
Q 011600 219 CLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLPSS 298 (481)
Q Consensus 219 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~~~~Sl~sQ~~~~~~~~FS~cL~~~ 298 (481)
|.|.+.|+||+.+.|++++|+|+|++...++++.|||+..+.+.+...+||||||+..+++++|+....+++||+||++.
T Consensus 34 ~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~ 113 (299)
T cd05472 34 CLYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDR 113 (299)
T ss_pred CeeeeEeCCCceEEEEEEEEEEEeCCCCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEEccCC
Confidence 37899999999889999999999997337899999999998877778999999999999999999887789999999875
Q ss_pred C-CCCceEEeCCCCC--CCceEeecccCCCCCccEEEEEeEEEEccEEeeecccccccCCeEEeccCceeecCHHHHHHH
Q 011600 299 A-SSTGHLTFGPGAS--KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 375 (481)
Q Consensus 299 ~-~~~G~L~fGg~d~--~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l 375 (481)
. ...|+|+||++|+ +++.|+|++.++..+.+|.|+|++|+||++.+.+++.....+++||||||++++||+++|++|
T Consensus 114 ~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l 193 (299)
T cd05472 114 SSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAAL 193 (299)
T ss_pred CCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHH
Confidence 4 4579999999886 799999999866556799999999999999987654333336799999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEE-eCCCceEEEEEeCCCCCCceee
Q 011600 376 RTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYA-SNISQVCLAFAGNSDPTDVSIF 454 (481)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~-~~~~~~Cla~~~~~~~~~~~Il 454 (481)
.+++.+.+...+...+...++.||+.++.....+|+|+|+|.+|+++.|++++|++. ...+..|+++...+.....+||
T Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~il 273 (299)
T cd05472 194 RDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGLSII 273 (299)
T ss_pred HHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCCEEE
Confidence 999998875544444445566799887766678999999997689999999999984 3456789998876434457999
Q ss_pred cHhhhceeEEEEECCCCEEEEEeCCC
Q 011600 455 GNTQQHTLEVVYDVAGGKVGFAAGGC 480 (481)
Q Consensus 455 G~~fl~~~~vvfD~~~~rIGFa~~~C 480 (481)
|+.|||++|+|||++++|||||+++|
T Consensus 274 G~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 274 GNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred chHHccceEEEEECCCCEEeEecCCC
Confidence 99999999999999999999999999
No 4
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=4.7e-58 Score=469.23 Aligned_cols=318 Identities=28% Similarity=0.511 Sum_probs=263.3
Q ss_pred ecCCCce-EEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCC-------CCCCCCCC
Q 011600 146 IGTPKKD-LSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATG-------NSPACASS 217 (481)
Q Consensus 146 iGTP~q~-~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~-------~~~~C~~~ 217 (481)
+|||-.+ +.|++||||+++||||.+| +|+||+.++|+++.|+.+..+.. +...|.++
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~---------------~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~ 66 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAG---------------HSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNN 66 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCC---------------CcCCCCccCcCChhhccccccCCCccccCCCCCCCCCC
Confidence 5788777 9999999999999999753 48899999999999987654311 12367777
Q ss_pred CceeeEE-cCCCCeEEEEEEEEEEEeCCC-------cccCceEEEEEEecC--CCCCCcceeeecCCCCCchhhhhhhhc
Q 011600 218 TCLYGIQ-YGDSSFSIGFFGKETLTLTPR-------DVFPNFLFGCGQNNR--GLFGGAAGLMGLGRDPISLVSQTATKY 287 (481)
Q Consensus 218 ~c~y~~~-Ygdgs~~~G~~~~Dtltl~~~-------~~~~~~~FGc~~~~~--g~~~~~~GilGLg~~~~Sl~sQ~~~~~ 287 (481)
.|.|... |++|+.+.|++++|+|+|+.. .+++++.|||++++. +.+..++||||||++++|+++|+....
T Consensus 67 ~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~ 146 (362)
T cd05489 67 TCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAF 146 (362)
T ss_pred cCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhc
Confidence 8999765 889988999999999999742 168899999999874 445568999999999999999998764
Q ss_pred C--CceEEeccCCCCCCceEEeCCCCC----------CCceEeecccCCCCCccEEEEEeEEEEccEEeeecccccc---
Q 011600 288 K--KLFSYCLPSSASSTGHLTFGPGAS----------KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFT--- 352 (481)
Q Consensus 288 ~--~~FS~cL~~~~~~~G~L~fGg~d~----------~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~--- 352 (481)
. ++|||||++..+..|+|+||+.+. +.+.||||+.++..+.+|+|+|++|+||++++.+++..+.
T Consensus 147 ~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~ 226 (362)
T cd05489 147 GVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDR 226 (362)
T ss_pred CCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccc
Confidence 3 899999997655589999999763 6899999998765568999999999999999988765442
Q ss_pred --cCCeEEeccCceeecCHHHHHHHHHHHHHhhhcCCCCCC-CCcccceeeccCC----cccccCeEEEEEcC-CeEEEE
Q 011600 353 --TAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPA-LSLLDTCYDFSKY----STVTLPQISLFFSG-GVEVSV 424 (481)
Q Consensus 353 --~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~-~~~~~~Cy~~~~~----~~~~~P~i~f~f~g-g~~~~l 424 (481)
.+++||||||++|+||+++|++|+++|.+++...+.... ...++.||+.... ....+|+|+|+|+| |++++|
T Consensus 227 ~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l 306 (362)
T cd05489 227 LGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTI 306 (362)
T ss_pred cCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEE
Confidence 268999999999999999999999999998875443322 2224789986532 23679999999986 799999
Q ss_pred CCCCcEEEeCCCceEEEEEeCCCC-CCceeecHhhhceeEEEEECCCCEEEEEeC
Q 011600 425 DKTGIMYASNISQVCLAFAGNSDP-TDVSIFGNTQQHTLEVVYDVAGGKVGFAAG 478 (481)
Q Consensus 425 ~~~~~l~~~~~~~~Cla~~~~~~~-~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 478 (481)
++++|+++...+.+|++|.+.+.. ...||||+.|||++|++||++++|||||+.
T Consensus 307 ~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 307 FGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred cCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 999999997667899999876432 457999999999999999999999999974
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.3e-54 Score=439.22 Aligned_cols=292 Identities=24% Similarity=0.502 Sum_probs=243.9
Q ss_pred eeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCCCC
Q 011600 138 GNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASS 217 (481)
Q Consensus 138 ~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~ 217 (481)
+.|+++|.||||+|++.|++||||+++||+|.+|. .|..+..+.|||++|+|++.++|++..|.. ...|.++
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~-~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-------~~~~~~~ 73 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK-NCGIHMEPPYNLNNSITSSILYCDCNKCCY-------CLSCLNN 73 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC-CcCCCCCCCcCcccccccccccCCCccccc-------cCcCCCC
Confidence 57999999999999999999999999999999996 498777789999999999999999999953 2357777
Q ss_pred CceeeEEcCCCCeEEEEEEEEEEEeCCCccc-------CceEEEEEEecCCCC--CCcceeeecCCCCCchh--------
Q 011600 218 TCLYGIQYGDSSFSIGFFGKETLTLTPRDVF-------PNFLFGCGQNNRGLF--GGAAGLMGLGRDPISLV-------- 280 (481)
Q Consensus 218 ~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~-------~~~~FGc~~~~~g~~--~~~~GilGLg~~~~Sl~-------- 280 (481)
.|.|.+.|+||+.+.|.+++|+|+|++. .+ .++.|||+....+.| ...+||||||+...+..
T Consensus 74 ~~~~~i~Y~~gs~~~G~~~~D~v~lg~~-~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~ 152 (326)
T cd06096 74 KCEYSISYSEGSSISGFYFSDFVSFESY-LNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLF 152 (326)
T ss_pred cCcEEEEECCCCceeeEEEEEEEEeccC-CCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHH
Confidence 8999999999988899999999999873 33 257899999887754 36899999999875321
Q ss_pred hhhhhh-cCCceEEeccCCCCCCceEEeCCCCC--------------CCceEeecccCCCCCccEEEEEeEEEEccEEee
Q 011600 281 SQTATK-YKKLFSYCLPSSASSTGHLTFGPGAS--------------KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLS 345 (481)
Q Consensus 281 sQ~~~~-~~~~FS~cL~~~~~~~G~L~fGg~d~--------------~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~ 345 (481)
.|.... ..++||+||++. .|+|+||++|+ +++.|+|+.. ..+|.|++++|+|+++...
T Consensus 153 ~~~~~~~~~~~FS~~l~~~---~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~----~~~y~v~l~~i~vg~~~~~ 225 (326)
T cd06096 153 TKRPKLKKDKIFSICLSED---GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR----KYYYYVKLEGLSVYGTTSN 225 (326)
T ss_pred HhcccccCCceEEEEEcCC---CeEEEECccChhhhcccccccccccCCceEEeccC----CceEEEEEEEEEEcccccc
Confidence 222111 148999999863 69999999763 5789999987 5789999999999988611
Q ss_pred -ecccccccCCeEEeccCceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEE
Q 011600 346 -IAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSV 424 (481)
Q Consensus 346 -~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l 424 (481)
.... ...+||||||++++||+++|++|.+++ |+|+|+|.+|+++.+
T Consensus 226 ~~~~~---~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~~i 272 (326)
T cd06096 226 SGNTK---GLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKIDW 272 (326)
T ss_pred eeccc---CCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEEEE
Confidence 1111 257999999999999999999998776 889999966899999
Q ss_pred CCCCcEEEeCCCceEEEEEeCCCCCCceeecHhhhceeEEEEECCCCEEEEEeCCCC
Q 011600 425 DKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS 481 (481)
Q Consensus 425 ~~~~~l~~~~~~~~Cla~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 481 (481)
+|++|++.......|+++... .+.+|||++|||++|+|||++++|||||+++|.
T Consensus 273 ~p~~y~~~~~~~~c~~~~~~~---~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 273 KPSSYLYKKESFWCKGGEKSV---SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred CHHHhccccCCceEEEEEecC---CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 999999886544445566543 357999999999999999999999999999995
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.6e-53 Score=429.62 Aligned_cols=295 Identities=23% Similarity=0.428 Sum_probs=247.9
Q ss_pred ccCceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcc-cccccCCCCCCCCCCCCccccccCCCcccccccccCCCCC
Q 011600 134 VVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV-KYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSP 212 (481)
Q Consensus 134 ~~~~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~-~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~ 212 (481)
+..+.+|+++|.||||||++.|+|||||+++||+|..|. ..|.. ++.|||++|+||+...
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~--~~~f~~~~Sst~~~~~----------------- 65 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSN--HNRFNPRQSSTYQSTG----------------- 65 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccc--cCcCCCCCCcceeeCC-----------------
Confidence 445789999999999999999999999999999999994 24644 4899999999998864
Q ss_pred CCCCCCceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCCCC---CCcceeeecCCCCCc------hhhhh
Q 011600 213 ACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLF---GGAAGLMGLGRDPIS------LVSQT 283 (481)
Q Consensus 213 ~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~S------l~sQ~ 283 (481)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+.+ ...+||||||+..++ ++.|+
T Consensus 66 ------~~~~~~yg~gs-~~G~~~~D~v~ig~-~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L 137 (317)
T cd05478 66 ------QPLSIQYGTGS-MTGILGYDTVQVGG-ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNM 137 (317)
T ss_pred ------cEEEEEECCce-EEEEEeeeEEEECC-EEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHH
Confidence 68999999998 79999999999998 689999999999877643 257999999987644 55666
Q ss_pred hhhc---CCceEEeccCCCCCCceEEeCCCCC----CCceEeecccCCCCCccEEEEEeEEEEccEEeeecccccccCCe
Q 011600 284 ATKY---KKLFSYCLPSSASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGT 356 (481)
Q Consensus 284 ~~~~---~~~FS~cL~~~~~~~G~L~fGg~d~----~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~~~~~ 356 (481)
..+. .++||+||.+.....|+|+|||+|+ +++.|+|+.. +.+|.|+|++|+|+++.+..... ..+
T Consensus 138 ~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~~~~~----~~~ 209 (317)
T cd05478 138 MSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQVVACSGG----CQA 209 (317)
T ss_pred HhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCEEEccCCC----CEE
Confidence 5442 5899999998755679999999873 6999999976 68999999999999998865432 469
Q ss_pred EEeccCceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEEeCCC
Q 011600 357 IIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNIS 436 (481)
Q Consensus 357 iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~~~~ 436 (481)
||||||++++||+++|++|.+++..... . ..+|.++|.....+|.|+|+| +|+++.|++++|+.+. .
T Consensus 210 iiDTGts~~~lp~~~~~~l~~~~~~~~~---~-------~~~~~~~C~~~~~~P~~~f~f-~g~~~~i~~~~y~~~~--~ 276 (317)
T cd05478 210 IVDTGTSLLVGPSSDIANIQSDIGASQN---Q-------NGEMVVNCSSISSMPDVVFTI-NGVQYPLPPSAYILQD--Q 276 (317)
T ss_pred EECCCchhhhCCHHHHHHHHHHhCCccc---c-------CCcEEeCCcCcccCCcEEEEE-CCEEEEECHHHheecC--C
Confidence 9999999999999999999998865421 1 124666777666899999999 7899999999999875 6
Q ss_pred ceEE-EEEeCCCCCCceeecHhhhceeEEEEECCCCEEEEEe
Q 011600 437 QVCL-AFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 477 (481)
Q Consensus 437 ~~Cl-a~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 477 (481)
..|+ +|.+.+ ....||||+.|||++|+|||++++|||||+
T Consensus 277 ~~C~~~~~~~~-~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 277 GSCTSGFQSMG-LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred CEEeEEEEeCC-CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 7898 576653 346799999999999999999999999996
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=8.2e-53 Score=425.99 Aligned_cols=297 Identities=24% Similarity=0.440 Sum_probs=241.9
Q ss_pred cCceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcc---cccccCCCCCCCCCCCCccccccCCCcccccccccCCCC
Q 011600 135 VGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV---KYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNS 211 (481)
Q Consensus 135 ~~~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~---~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~ 211 (481)
+.+.+|+++|.||||+|++.|++||||+++||+|..|. ..|..+ +.|||++|+||+...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~--~~y~~~~SsT~~~~~---------------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLH--HKYNSSKSSTYVKNG---------------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCc--CcCCcccCcceeeCC----------------
Confidence 34789999999999999999999999999999999994 257654 799999999998632
Q ss_pred CCCCCCCceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCC-CC--CCcceeeecCCCCCch------hhh
Q 011600 212 PACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG-LF--GGAAGLMGLGRDPISL------VSQ 282 (481)
Q Consensus 212 ~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~Sl------~sQ 282 (481)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+ .| ...+||||||++.++. +.+
T Consensus 64 -------~~~~i~Yg~G~-~~G~~~~D~v~~g~-~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 134 (325)
T cd05490 64 -------TEFAIQYGSGS-LSGYLSQDTVSIGG-LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDN 134 (325)
T ss_pred -------cEEEEEECCcE-EEEEEeeeEEEECC-EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHH
Confidence 69999999997 79999999999998 6899999999998766 23 2579999999987664 334
Q ss_pred hhhh---cCCceEEeccCCCC--CCceEEeCCCCC----CCceEeecccCCCCCccEEEEEeEEEEccEEeeeccccccc
Q 011600 283 TATK---YKKLFSYCLPSSAS--STGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTT 353 (481)
Q Consensus 283 ~~~~---~~~~FS~cL~~~~~--~~G~L~fGg~d~----~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~~ 353 (481)
+..+ ..++||+||.+... ..|+|+|||+|+ +++.|+|+.. ..+|.|+|++|+||++.......
T Consensus 135 l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~~---- 206 (325)
T cd05490 135 IMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGLTLCKGG---- 206 (325)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCeeeecCCC----
Confidence 4432 26899999986432 479999999874 6899999976 67999999999999875432221
Q ss_pred CCeEEeccCceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEEe
Q 011600 354 AGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYAS 433 (481)
Q Consensus 354 ~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~ 433 (481)
..+||||||+++++|++++++|.+++.+. +... .+|.++|.....+|+|+|+| ||+++.|++++|+++.
T Consensus 207 ~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~------~~~~~~C~~~~~~P~i~f~f-gg~~~~l~~~~y~~~~ 275 (325)
T cd05490 207 CEAIVDTGTSLITGPVEEVRALQKAIGAV----PLIQ------GEYMIDCEKIPTLPVISFSL-GGKVYPLTGEDYILKV 275 (325)
T ss_pred CEEEECCCCccccCCHHHHHHHHHHhCCc----cccC------CCEEecccccccCCCEEEEE-CCEEEEEChHHeEEec
Confidence 46999999999999999999999988642 2111 13556666566799999999 7899999999999875
Q ss_pred C--CCceEE-EEEeCC---CCCCceeecHhhhceeEEEEECCCCEEEEEe
Q 011600 434 N--ISQVCL-AFAGNS---DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 477 (481)
Q Consensus 434 ~--~~~~Cl-a~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 477 (481)
. ....|+ +|...+ .....||||++|||++|+|||++++|||||+
T Consensus 276 ~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 276 SQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred cCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 3 246898 576532 2345799999999999999999999999996
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=4e-52 Score=419.71 Aligned_cols=295 Identities=24% Similarity=0.470 Sum_probs=246.0
Q ss_pred ceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcc-cccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCC
Q 011600 137 AGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV-KYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACA 215 (481)
Q Consensus 137 ~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~-~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~ 215 (481)
+..|+++|.||||||++.|++||||+++||+|..|. ..|..+ +.|||++|+||+...
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~--~~f~~~~SsT~~~~~-------------------- 58 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNH--TKFNPSQSSTYSTNG-------------------- 58 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCcccccc--CCCCcccCCCceECC--------------------
Confidence 357999999999999999999999999999999994 247654 899999999998753
Q ss_pred CCCceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCCC-C--CCcceeeecCCCC------Cchhhhhhhh
Q 011600 216 SSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGL-F--GGAAGLMGLGRDP------ISLVSQTATK 286 (481)
Q Consensus 216 ~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~------~Sl~sQ~~~~ 286 (481)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+. + ...+||||||+.. .+++.|+..+
T Consensus 59 ---~~~~~~Yg~Gs-~~G~~~~D~i~~g~-~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~ 133 (318)
T cd05477 59 ---ETFSLQYGSGS-LTGIFGYDTVTVQG-IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQ 133 (318)
T ss_pred ---cEEEEEECCcE-EEEEEEeeEEEECC-EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhc
Confidence 79999999997 69999999999998 68999999999987652 2 3579999999864 3466677654
Q ss_pred c---CCceEEeccCCC-CCCceEEeCCCCC----CCceEeecccCCCCCccEEEEEeEEEEccEEeeecccccccCCeEE
Q 011600 287 Y---KKLFSYCLPSSA-SSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTII 358 (481)
Q Consensus 287 ~---~~~FS~cL~~~~-~~~G~L~fGg~d~----~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~~~~~ii 358 (481)
. .++||+||.+.. ...|.|+|||+|+ +++.|+|+.. ..+|.|+|++|+|+++++.+.... ..+||
T Consensus 134 g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~---~~~ii 206 (318)
T cd05477 134 NLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATGWCSQG---CQAIV 206 (318)
T ss_pred CCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEecccCCC---ceeeE
Confidence 2 689999998753 2469999999874 5799999976 679999999999999987643322 45999
Q ss_pred eccCceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEEeCCCce
Q 011600 359 DSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQV 438 (481)
Q Consensus 359 DSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~~~~~~ 438 (481)
||||++++||+++|++|++++.+.... ..+|.++|.....+|.|+|+| +|+++.|++++|++.. +..
T Consensus 207 DSGtt~~~lP~~~~~~l~~~~~~~~~~----------~~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~~y~~~~--~~~ 273 (318)
T cd05477 207 DTGTSLLTAPQQVMSTLMQSIGAQQDQ----------YGQYVVNCNNIQNLPTLTFTI-NGVSFPLPPSAYILQN--NGY 273 (318)
T ss_pred CCCCccEECCHHHHHHHHHHhCCcccc----------CCCEEEeCCccccCCcEEEEE-CCEEEEECHHHeEecC--CCe
Confidence 999999999999999999998765321 125777777667799999999 7899999999999875 568
Q ss_pred EE-EEEeCC----CCCCceeecHhhhceeEEEEECCCCEEEEEeC
Q 011600 439 CL-AFAGNS----DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAG 478 (481)
Q Consensus 439 Cl-a~~~~~----~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 478 (481)
|+ +|.+.. .+...+|||+.|||++|++||++++|||||++
T Consensus 274 C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 274 CTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred EEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 97 786531 12347999999999999999999999999985
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.6e-52 Score=422.25 Aligned_cols=291 Identities=23% Similarity=0.448 Sum_probs=240.3
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEeCCCcc-cccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCCCCC
Q 011600 140 YIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV-KYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASST 218 (481)
Q Consensus 140 Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~-~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 218 (481)
|+++|+||||||++.|+|||||+++||+|..|. ..|..+ +.|||++|+||+...
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~--~~y~~~~SsT~~~~~----------------------- 55 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKH--NRFQPSESSTYVSNG----------------------- 55 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCcc--ceECCCCCcccccCC-----------------------
Confidence 889999999999999999999999999999994 358654 789999999998764
Q ss_pred ceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCC-CC--CCcceeeecCCCCCch------hhhhhhh---
Q 011600 219 CLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG-LF--GGAAGLMGLGRDPISL------VSQTATK--- 286 (481)
Q Consensus 219 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~Sl------~sQ~~~~--- 286 (481)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+..+.+ .| ...+||||||++.++. ..++..+
T Consensus 56 ~~~~i~Yg~g~-~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i 133 (316)
T cd05486 56 EAFSIQYGTGS-LTGIIGIDQVTVEG-ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLV 133 (316)
T ss_pred cEEEEEeCCcE-EEEEeeecEEEECC-EEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCC
Confidence 69999999996 79999999999998 6899999999988765 23 2689999999987653 3344332
Q ss_pred cCCceEEeccCCC--CCCceEEeCCCCC----CCceEeecccCCCCCccEEEEEeEEEEccEEeeecccccccCCeEEec
Q 011600 287 YKKLFSYCLPSSA--SSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDS 360 (481)
Q Consensus 287 ~~~~FS~cL~~~~--~~~G~L~fGg~d~----~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~~~~~iiDS 360 (481)
..++||+||.+.+ ...|+|+|||+|+ +++.|+|+.. ..+|.|+|++|+|+++.+..+.. ..+||||
T Consensus 134 ~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~~~~~----~~aiiDT 205 (316)
T cd05486 134 ELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIFCSDG----CQAIVDT 205 (316)
T ss_pred CCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEecCCC----CEEEECC
Confidence 1578999998643 2479999999875 6899999976 67999999999999988754432 4699999
Q ss_pred cCceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEEe--CCCce
Q 011600 361 GTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYAS--NISQV 438 (481)
Q Consensus 361 GT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~--~~~~~ 438 (481)
||++++||++++++|.+++.+. .. +.+|.++|.....+|+|+|+| +|++++|++++|++.. ..+..
T Consensus 206 GTs~~~lP~~~~~~l~~~~~~~-----~~------~~~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~ 273 (316)
T cd05486 206 GTSLITGPSGDIKQLQNYIGAT-----AT------DGEYGVDCSTLSLMPSVTFTI-NGIPYSLSPQAYTLEDQSDGGGY 273 (316)
T ss_pred CcchhhcCHHHHHHHHHHhCCc-----cc------CCcEEEeccccccCCCEEEEE-CCEEEEeCHHHeEEecccCCCCE
Confidence 9999999999999998877542 11 124666776666799999999 7899999999999874 33568
Q ss_pred EE-EEEeCC---CCCCceeecHhhhceeEEEEECCCCEEEEEe
Q 011600 439 CL-AFAGNS---DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 477 (481)
Q Consensus 439 Cl-a~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 477 (481)
|+ +|+... ...+.||||+.|||++|+|||.+++|||||+
T Consensus 274 C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 274 CSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 98 676542 2245799999999999999999999999996
No 10
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=5.4e-52 Score=419.15 Aligned_cols=295 Identities=26% Similarity=0.471 Sum_probs=244.2
Q ss_pred ccCceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcc-cccccCCCCCCCCCCCCccccccCCCcccccccccCCCCC
Q 011600 134 VVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV-KYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSP 212 (481)
Q Consensus 134 ~~~~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~-~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~ 212 (481)
++.+.+|+++|.||||+|++.|++||||+++||+|.+|. ..|..+ +.|+|++|+|++...
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~--~~y~~~~Sst~~~~~----------------- 65 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLH--SKYDSSASSTYKANG----------------- 65 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCc--ceECCCCCcceeeCC-----------------
Confidence 445788999999999999999999999999999999994 358755 799999999988643
Q ss_pred CCCCCCceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCCC-C--CCcceeeecCCCCCchhhh------h
Q 011600 213 ACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGL-F--GGAAGLMGLGRDPISLVSQ------T 283 (481)
Q Consensus 213 ~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g~-~--~~~~GilGLg~~~~Sl~sQ------~ 283 (481)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+. | ...+||||||++..++..+ +
T Consensus 66 ------~~~~~~y~~g~-~~G~~~~D~v~ig~-~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 137 (320)
T cd05488 66 ------TEFKIQYGSGS-LEGFVSQDTLSIGD-LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNM 137 (320)
T ss_pred ------CEEEEEECCce-EEEEEEEeEEEECC-EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHH
Confidence 79999999997 79999999999987 68899999999887663 2 3679999999998765432 2
Q ss_pred hhh---cCCceEEeccCCCCCCceEEeCCCCC----CCceEeecccCCCCCccEEEEEeEEEEccEEeeecccccccCCe
Q 011600 284 ATK---YKKLFSYCLPSSASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGT 356 (481)
Q Consensus 284 ~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~----~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~~~~~ 356 (481)
..+ ..+.||+||.+.....|.|+|||+|+ +++.|+|+.. ..+|.|++++|+||++.+.... ..+
T Consensus 138 ~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~~-----~~~ 208 (320)
T cd05488 138 INQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELELEN-----TGA 208 (320)
T ss_pred HhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEeccCC-----CeE
Confidence 221 26799999998655679999999874 6899999986 5789999999999998876442 359
Q ss_pred EEeccCceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEEeCCC
Q 011600 357 IIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNIS 436 (481)
Q Consensus 357 iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~~~~ 436 (481)
||||||++++||++++++|.+++.+.. . ...+|.++|.....+|.|+|+| +|+++.|++++|+++. .
T Consensus 209 ivDSGtt~~~lp~~~~~~l~~~~~~~~---~-------~~~~~~~~C~~~~~~P~i~f~f-~g~~~~i~~~~y~~~~--~ 275 (320)
T cd05488 209 AIDTGTSLIALPSDLAEMLNAEIGAKK---S-------WNGQYTVDCSKVDSLPDLTFNF-DGYNFTLGPFDYTLEV--S 275 (320)
T ss_pred EEcCCcccccCCHHHHHHHHHHhCCcc---c-------cCCcEEeeccccccCCCEEEEE-CCEEEEECHHHheecC--C
Confidence 999999999999999999998885431 1 1235667777666899999999 6899999999999864 4
Q ss_pred ceEE-EEEeCC---CCCCceeecHhhhceeEEEEECCCCEEEEEe
Q 011600 437 QVCL-AFAGNS---DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 477 (481)
Q Consensus 437 ~~Cl-a~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 477 (481)
..|+ .+.... ...+.||||+.|||++|+|||++++|||||+
T Consensus 276 g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 276 GSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 5798 555432 1234799999999999999999999999986
No 11
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.4e-51 Score=433.25 Aligned_cols=307 Identities=21% Similarity=0.403 Sum_probs=247.8
Q ss_pred eeeccccCCccCceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcc-cccccCCCCCCCCCCCCccccccCCCccccc
Q 011600 125 ATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV-KYCYEQKEPKFDPTVSQSYSNVSCSSTICTS 203 (481)
Q Consensus 125 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~-~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~ 203 (481)
...|+. ++.+.+|+++|+||||||+|.|++||||+++||+|..|. ..|..+ +.|||++||||+.+.+...
T Consensus 109 ~~~~l~---n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~--~~yd~s~SSTy~~~~~~~~---- 179 (482)
T PTZ00165 109 LQQDLL---NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPH--RKFDPKKSSTYTKLKLGDE---- 179 (482)
T ss_pred cceecc---cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCccccccc--CCCCccccCCcEecCCCCc----
Confidence 345554 667899999999999999999999999999999999994 357644 8999999999998532110
Q ss_pred ccccCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCC-CCC--CcceeeecCCCCCc--
Q 011600 204 LQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG-LFG--GAAGLMGLGRDPIS-- 278 (481)
Q Consensus 204 ~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g-~~~--~~~GilGLg~~~~S-- 278 (481)
...+.+.|++|+ ..|.+++|+|+|++ ..++++.|||++...+ .|. .+|||||||++.++
T Consensus 180 --------------~~~~~i~YGsGs-~~G~l~~DtV~ig~-l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~ 243 (482)
T PTZ00165 180 --------------SAETYIQYGTGE-CVLALGKDTVKIGG-LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFK 243 (482)
T ss_pred --------------cceEEEEeCCCc-EEEEEEEEEEEECC-EEEccEEEEEEEeccccccccccccceeecCCCccccc
Confidence 124669999997 67999999999998 7999999999998765 343 58999999998753
Q ss_pred -------hhhhhhhh---cCCceEEeccCCCCCCceEEeCCCCC------CCceEeecccCCCCCccEEEEEeEEEEccE
Q 011600 279 -------LVSQTATK---YKKLFSYCLPSSASSTGHLTFGPGAS------KSVQFTPLSSISGGSSFYGLEMIGISVGGQ 342 (481)
Q Consensus 279 -------l~sQ~~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~------~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~ 342 (481)
++.|+..+ ..++||+||++.....|+|+|||+|+ +++.|+|+.. ..+|.|++++|+||++
T Consensus 244 s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~i~vgg~ 319 (482)
T PTZ00165 244 ESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVDILIDGK 319 (482)
T ss_pred ccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCeEEECCE
Confidence 33444432 26899999987655679999999763 4799999987 6899999999999998
Q ss_pred EeeecccccccCCeEEeccCceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcC--C-
Q 011600 343 KLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSG--G- 419 (481)
Q Consensus 343 ~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~g--g- 419 (481)
.+...... ..+|+||||+++++|+++|++|.+++... ..|.+ ...+|+|+|+|.| |
T Consensus 320 ~~~~~~~~---~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~-----~~~lP~itf~f~g~~g~ 378 (482)
T PTZ00165 320 SLGFCDRK---CKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSN-----KDSLPRISFVLEDVNGR 378 (482)
T ss_pred EeeecCCc---eEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------ccccc-----cccCCceEEEECCCCCc
Confidence 87764332 45999999999999999999999987543 13643 4578999999942 1
Q ss_pred -eEEEECCCCcEEEe----CCCceEE-EEEeCCC---CCCceeecHhhhceeEEEEECCCCEEEEEeCCCC
Q 011600 420 -VEVSVDKTGIMYAS----NISQVCL-AFAGNSD---PTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS 481 (481)
Q Consensus 420 -~~~~l~~~~~l~~~----~~~~~Cl-a~~~~~~---~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 481 (481)
.++.|++++|+++. ..+..|+ +|.+.+. .++.||||++|||++|+|||++++|||||+++|+
T Consensus 379 ~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 379 KIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred eEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccC
Confidence 38999999999874 2356897 7876531 2457999999999999999999999999999984
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.2e-51 Score=417.74 Aligned_cols=296 Identities=22% Similarity=0.396 Sum_probs=243.0
Q ss_pred ccCceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCccc---ccccCCCCCCCCCCCCccccccCCCcccccccccCCC
Q 011600 134 VVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVK---YCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGN 210 (481)
Q Consensus 134 ~~~~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~---~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~ 210 (481)
++.+..|+++|.||||+|++.|++||||+++||+|..|.. .|..+ +.|||++|+||+...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~--~~y~~~~SsT~~~~~--------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTH--NLYDASDSSTYKENG--------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhccc--CcCCCCCCeeeeECC---------------
Confidence 4557899999999999999999999999999999888843 57644 799999999998753
Q ss_pred CCCCCCCCceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCC-C--CCCcceeeecCCCCCc---------
Q 011600 211 SPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG-L--FGGAAGLMGLGRDPIS--------- 278 (481)
Q Consensus 211 ~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g-~--~~~~~GilGLg~~~~S--------- 278 (481)
|.|.+.|++|+ +.|.+++|+|+|++ ..+ ++.|||+....+ . ....+||||||++..+
T Consensus 66 --------~~~~~~Yg~g~-~~G~~~~D~v~~g~-~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 134 (326)
T cd05487 66 --------TEFTIHYASGT-VKGFLSQDIVTVGG-IPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFD 134 (326)
T ss_pred --------EEEEEEeCCce-EEEEEeeeEEEECC-EEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHH
Confidence 79999999997 89999999999997 455 488999988643 2 2368999999998765
Q ss_pred -hhhhhhhhcCCceEEeccCCC--CCCceEEeCCCCC----CCceEeecccCCCCCccEEEEEeEEEEccEEeeeccccc
Q 011600 279 -LVSQTATKYKKLFSYCLPSSA--SSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVF 351 (481)
Q Consensus 279 -l~sQ~~~~~~~~FS~cL~~~~--~~~G~L~fGg~d~----~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f 351 (481)
|.+|... ..++||+||.+.+ ...|+|+|||+|+ +++.|+|+.. ..+|.|+|++|+|+++.+.....
T Consensus 135 ~L~~qg~i-~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~~-- 207 (326)
T cd05487 135 NIMSQGVL-KEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK----TGFWQIQMKGVSVGSSTLLCEDG-- 207 (326)
T ss_pred HHHhcCCC-CCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc----CceEEEEecEEEECCEEEecCCC--
Confidence 3444332 2789999998754 2479999999874 6899999875 67899999999999998765432
Q ss_pred ccCCeEEeccCceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEE
Q 011600 352 TTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMY 431 (481)
Q Consensus 352 ~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~ 431 (481)
..+||||||++++||++++++|++++++.. . ..+|.++|.....+|.|+|+| ||.+++|++++|++
T Consensus 208 --~~aiiDSGts~~~lP~~~~~~l~~~~~~~~---~--------~~~y~~~C~~~~~~P~i~f~f-gg~~~~v~~~~yi~ 273 (326)
T cd05487 208 --CTAVVDTGASFISGPTSSISKLMEALGAKE---R--------LGDYVVKCNEVPTLPDISFHL-GGKEYTLSSSDYVL 273 (326)
T ss_pred --CEEEECCCccchhCcHHHHHHHHHHhCCcc---c--------CCCEEEeccccCCCCCEEEEE-CCEEEEeCHHHhEE
Confidence 359999999999999999999999986541 1 123666777667899999999 78999999999998
Q ss_pred EeCC--CceEE-EEEeCC---CCCCceeecHhhhceeEEEEECCCCEEEEEeC
Q 011600 432 ASNI--SQVCL-AFAGNS---DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAG 478 (481)
Q Consensus 432 ~~~~--~~~Cl-a~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 478 (481)
+... +..|+ +|...+ ...+.+|||+.|||++|+|||++++|||||++
T Consensus 274 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 274 QDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred eccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 7532 56897 777542 22357999999999999999999999999986
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=4e-51 Score=412.20 Aligned_cols=287 Identities=26% Similarity=0.476 Sum_probs=234.2
Q ss_pred ccCceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcc--cccccCCCCCCCCCCCCccccccCCCcccccccccCCCC
Q 011600 134 VVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV--KYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNS 211 (481)
Q Consensus 134 ~~~~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~--~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~ 211 (481)
++.+.+|+++|.||||||++.|++||||+++||+|..|. ..|..+ +.|||++|+||+...
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~~---------------- 66 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFH--SKYKSSKSSTYKKNG---------------- 66 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccccc--CcCCcccCCCcccCC----------------
Confidence 556789999999999999999999999999999999994 368755 799999999988753
Q ss_pred CCCCCCCceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCC-CC--CCcceeeecCCCCCch------hhh
Q 011600 212 PACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG-LF--GGAAGLMGLGRDPISL------VSQ 282 (481)
Q Consensus 212 ~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~Sl------~sQ 282 (481)
+.+.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+ .| ...+||||||+...+. ..+
T Consensus 67 -------~~~~i~Yg~G~-~~G~~~~D~v~ig~-~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 137 (317)
T cd06098 67 -------TSASIQYGTGS-ISGFFSQDSVTVGD-LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYN 137 (317)
T ss_pred -------CEEEEEcCCce-EEEEEEeeEEEECC-EEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHH
Confidence 47899999997 78999999999998 6899999999998755 23 3689999999987654 223
Q ss_pred hhhh---cCCceEEeccCCC--CCCceEEeCCCCC----CCceEeecccCCCCCccEEEEEeEEEEccEEeeeccccccc
Q 011600 283 TATK---YKKLFSYCLPSSA--SSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTT 353 (481)
Q Consensus 283 ~~~~---~~~~FS~cL~~~~--~~~G~L~fGg~d~----~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~~ 353 (481)
+..+ ..++||+||.+.. ...|+|+|||+|+ +++.|+|+.. ..+|.|++++|+|+++.+......
T Consensus 138 l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~--- 210 (317)
T cd06098 138 MVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTGFCAGG--- 210 (317)
T ss_pred HHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECCEEeeecCCC---
Confidence 3322 2579999998643 2479999999875 6899999976 578999999999999987654432
Q ss_pred CCeEEeccCceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEEe
Q 011600 354 AGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYAS 433 (481)
Q Consensus 354 ~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~ 433 (481)
..+||||||++++||++++++|. .. -.|++ ...+|+|+|+| +|++++|++++|+++.
T Consensus 211 ~~aivDTGTs~~~lP~~~~~~i~----------------~~-~~C~~-----~~~~P~i~f~f-~g~~~~l~~~~yi~~~ 267 (317)
T cd06098 211 CAAIADSGTSLLAGPTTIVTQIN----------------SA-VDCNS-----LSSMPNVSFTI-GGKTFELTPEQYILKV 267 (317)
T ss_pred cEEEEecCCcceeCCHHHHHhhh----------------cc-CCccc-----cccCCcEEEEE-CCEEEEEChHHeEEee
Confidence 35999999999999998876653 01 13643 34689999999 7899999999999875
Q ss_pred C--CCceEE-EEEeCC---CCCCceeecHhhhceeEEEEECCCCEEEEEe
Q 011600 434 N--ISQVCL-AFAGNS---DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 477 (481)
Q Consensus 434 ~--~~~~Cl-a~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 477 (481)
. ....|+ +|...+ .....||||+.|||++|+|||++++|||||+
T Consensus 268 ~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 268 GEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred cCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 3 245898 676432 1245799999999999999999999999995
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=5.5e-51 Score=413.23 Aligned_cols=297 Identities=25% Similarity=0.448 Sum_probs=244.6
Q ss_pred ccCceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCccc---ccccCCCCCCCCCCCCccccccCCCcccccccccCCC
Q 011600 134 VVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVK---YCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGN 210 (481)
Q Consensus 134 ~~~~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~---~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~ 210 (481)
++.+.+|+++|.||||+|++.|++||||+++||+|..|.. .|.. .+.|||++|+|++...
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~--~~~y~~~~Sst~~~~~--------------- 68 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLL--HNKYDSTKSSTYKKNG--------------- 68 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccC--CCeECCcCCCCeEECC---------------
Confidence 5667899999999999999999999999999999999942 4754 3789999999998754
Q ss_pred CCCCCCCCceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCC-CC--CCcceeeecCCCCCch------hh
Q 011600 211 SPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG-LF--GGAAGLMGLGRDPISL------VS 281 (481)
Q Consensus 211 ~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~Sl------~s 281 (481)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+.++.+ .| ...+||||||++.++. ..
T Consensus 69 --------~~~~i~Y~~g~-~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~ 138 (329)
T cd05485 69 --------TEFAIQYGSGS-LSGFLSTDTVSVGG-VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFY 138 (329)
T ss_pred --------eEEEEEECCce-EEEEEecCcEEECC-EEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHH
Confidence 79999999997 79999999999997 6889999999988765 23 3579999999987763 34
Q ss_pred hhhhh---cCCceEEeccCCCC--CCceEEeCCCCC----CCceEeecccCCCCCccEEEEEeEEEEccEEeeecccccc
Q 011600 282 QTATK---YKKLFSYCLPSSAS--STGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFT 352 (481)
Q Consensus 282 Q~~~~---~~~~FS~cL~~~~~--~~G~L~fGg~d~----~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~ 352 (481)
|+..+ ..+.||+||.+..+ ..|+|+|||.|+ +++.|+|+.. ..+|.|.+++|+|+++.+....
T Consensus 139 ~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~~~~---- 210 (329)
T cd05485 139 NMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFCSGG---- 210 (329)
T ss_pred HHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEECCeeecCCC----
Confidence 44333 25899999986543 479999999874 6899999975 6899999999999998764211
Q ss_pred cCCeEEeccCceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEE
Q 011600 353 TAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYA 432 (481)
Q Consensus 353 ~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~ 432 (481)
..+||||||++++||+++|++|.+++... ... ..||.++|.....+|+|+|+| ||+++.|++++|+++
T Consensus 211 -~~~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~~------~~~~~~~C~~~~~~p~i~f~f-gg~~~~i~~~~yi~~ 278 (329)
T cd05485 211 -CQAIADTGTSLIAGPVDEIEKLNNAIGAK----PII------GGEYMVNCSAIPSLPDITFVL-GGKSFSLTGKDYVLK 278 (329)
T ss_pred -cEEEEccCCcceeCCHHHHHHHHHHhCCc----ccc------CCcEEEeccccccCCcEEEEE-CCEEeEEChHHeEEE
Confidence 35999999999999999999999888653 111 135777777667789999999 789999999999988
Q ss_pred eC--CCceEE-EEEeCC---CCCCceeecHhhhceeEEEEECCCCEEEEEe
Q 011600 433 SN--ISQVCL-AFAGNS---DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 477 (481)
Q Consensus 433 ~~--~~~~Cl-a~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 477 (481)
.. ...+|+ +|+... ...+.+|||+.|||++|+|||++++|||||+
T Consensus 279 ~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 279 VTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred ecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 53 246898 677532 2245799999999999999999999999984
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=4.1e-51 Score=419.79 Aligned_cols=307 Identities=22% Similarity=0.362 Sum_probs=236.0
Q ss_pred eEEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCCCCC
Q 011600 139 NYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASST 218 (481)
Q Consensus 139 ~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 218 (481)
+|+++|.||||+|++.|+|||||+++||+|.+| |. .++.|||++|+||+...
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~---~~--~~~~f~~~~SsT~~~~~----------------------- 54 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH---PF--IHTYFHRELSSTYRDLG----------------------- 54 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcCCC---cc--ccccCCchhCcCcccCC-----------------------
Confidence 699999999999999999999999999999987 32 23789999999999875
Q ss_pred ceeeEEcCCCCeEEEEEEEEEEEeCCCcc-cCceEEEEEEecCCCCC---CcceeeecCCCCC------------chhhh
Q 011600 219 CLYGIQYGDSSFSIGFFGKETLTLTPRDV-FPNFLFGCGQNNRGLFG---GAAGLMGLGRDPI------------SLVSQ 282 (481)
Q Consensus 219 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~-~~~~~FGc~~~~~g~~~---~~~GilGLg~~~~------------Sl~sQ 282 (481)
|.|.+.|++|+ +.|.+++|+|+|++... .-.+.|++.+...+.+. ..+||||||++.+ +|++|
T Consensus 55 ~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q 133 (364)
T cd05473 55 KGVTVPYTQGS-WEGELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQ 133 (364)
T ss_pred ceEEEEECcce-EEEEEEEEEEEECCCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhc
Confidence 79999999997 68999999999985211 11133566666555432 5799999999876 34555
Q ss_pred hhhhcCCceEEeccC---------CCCCCceEEeCCCCC----CCceEeecccCCCCCccEEEEEeEEEEccEEeeeccc
Q 011600 283 TATKYKKLFSYCLPS---------SASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAAS 349 (481)
Q Consensus 283 ~~~~~~~~FS~cL~~---------~~~~~G~L~fGg~d~----~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~ 349 (481)
... .++||++|.. .....|+|+|||+|+ +++.|+|+.. ..+|.|+|++|+|+++.+.++..
T Consensus 134 ~~~--~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~vg~~~~~~~~~ 207 (364)
T cd05473 134 TGI--PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLEVGGQSLNLDCK 207 (364)
T ss_pred cCC--ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEEECCEecccccc
Confidence 542 5799997742 112479999999874 6899999986 57899999999999999887654
Q ss_pred ccccCCeEEeccCceeecCHHHHHHHHHHHHHhhhcCCCCCC--CCcccceeeccCCcccccCeEEEEEcCC-----eEE
Q 011600 350 VFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPA--LSLLDTCYDFSKYSTVTLPQISLFFSGG-----VEV 422 (481)
Q Consensus 350 ~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~Cy~~~~~~~~~~P~i~f~f~gg-----~~~ 422 (481)
.+....+||||||++++||+++|++|.+++++++........ ......|++........+|+|+|+|+|+ .++
T Consensus 208 ~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l 287 (364)
T cd05473 208 EYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRI 287 (364)
T ss_pred cccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEE
Confidence 443346999999999999999999999999987532111111 1112358764332224699999999652 478
Q ss_pred EECCCCcEEEeC---CCceEEEEEeCCCCCCceeecHhhhceeEEEEECCCCEEEEEeCCCC
Q 011600 423 SVDKTGIMYASN---ISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGCS 481 (481)
Q Consensus 423 ~l~~~~~l~~~~---~~~~Cla~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 481 (481)
.|++++|+.... .+..|+++.... ..+.+|||++|||++|+|||++++|||||+++|+
T Consensus 288 ~l~p~~Y~~~~~~~~~~~~C~~~~~~~-~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~ 348 (364)
T cd05473 288 TILPQLYLRPVEDHGTQLDCYKFAISQ-STNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCA 348 (364)
T ss_pred EECHHHhhhhhccCCCcceeeEEeeec-CCCceEEeeeeEcceEEEEECCCCEEeeEecccc
Confidence 999999987642 246898654322 2346999999999999999999999999999995
No 16
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.1e-50 Score=397.40 Aligned_cols=256 Identities=33% Similarity=0.606 Sum_probs=215.7
Q ss_pred eeEEEEEEecCCCceEEEEEEcCCCceeEeCC-CcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCCC
Q 011600 138 GNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCE-PCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACAS 216 (481)
Q Consensus 138 ~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~-~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~ 216 (481)
++|+++|.||||||++.|++||||+++||+|. +|. .|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~-~c----------------------------------------- 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT-GC----------------------------------------- 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC-CC-----------------------------------------
Confidence 47999999999999999999999999999994 663 24
Q ss_pred CCceeeEEcCCCCeEEEEEEEEEEEeCCC---cccCceEEEEEEecCCCC----CCcceeeecCCCCCchhhhhhhh--c
Q 011600 217 STCLYGIQYGDSSFSIGFFGKETLTLTPR---DVFPNFLFGCGQNNRGLF----GGAAGLMGLGRDPISLVSQTATK--Y 287 (481)
Q Consensus 217 ~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~---~~~~~~~FGc~~~~~g~~----~~~~GilGLg~~~~Sl~sQ~~~~--~ 287 (481)
.|.|.+.|+|++.+.|.+++|+|+|+.. ..++++.|||++.+.+.+ ...+||||||+++.++++|+..+ .
T Consensus 39 -~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i 117 (273)
T cd05475 39 -QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGII 117 (273)
T ss_pred -cCccEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCc
Confidence 1789999999888999999999999632 367899999998876532 26899999999999999998865 2
Q ss_pred CCceEEeccCCCCCCceEEeCCCC--CCCceEeecccCCCCCccEEEEEeEEEEccEEeeecccccccCCeEEeccCcee
Q 011600 288 KKLFSYCLPSSASSTGHLTFGPGA--SKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVIT 365 (481)
Q Consensus 288 ~~~FS~cL~~~~~~~G~L~fGg~d--~~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~~~~~iiDSGT~~t 365 (481)
+++||+||++. ..|.|+||+.. .+++.|+|+..++. ..+|.|++.+|+||++.+.. . ..++||||||+++
T Consensus 118 ~~~Fs~~l~~~--~~g~l~~G~~~~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~~--~---~~~~ivDTGTt~t 189 (273)
T cd05475 118 KNVIGHCLSSN--GGGFLFFGDDLVPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTGG--K---GLEVVFDSGSSYT 189 (273)
T ss_pred CceEEEEccCC--CCeEEEECCCCCCCCCeeecccccCCC-CCeEEEeEeEEEECCEECcC--C---CceEEEECCCceE
Confidence 57899999873 36999999743 36899999987653 57999999999999985431 1 1469999999999
Q ss_pred ecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCC---eEEEECCCCcEEEeCCCceEEEE
Q 011600 366 RLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGG---VEVSVDKTGIMYASNISQVCLAF 442 (481)
Q Consensus 366 ~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg---~~~~l~~~~~l~~~~~~~~Cla~ 442 (481)
+||+++| +|+|+|+|.++ ++++|++++|++....+..|+++
T Consensus 190 ~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~ 233 (273)
T cd05475 190 YFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGI 233 (273)
T ss_pred EcCCccc------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEE
Confidence 9999877 58899999644 79999999999886666789988
Q ss_pred EeCCC--CCCceeecHhhhceeEEEEECCCCEEEEEeCCC
Q 011600 443 AGNSD--PTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGC 480 (481)
Q Consensus 443 ~~~~~--~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C 480 (481)
....+ ..+.||||+.|||++|++||++++|||||+++|
T Consensus 234 ~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 234 LNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred ecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 75532 235799999999999999999999999999999
No 17
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.7e-49 Score=411.85 Aligned_cols=301 Identities=20% Similarity=0.360 Sum_probs=239.1
Q ss_pred eeeccccCCccCceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcc-cccccCCCCCCCCCCCCccccccCCCccccc
Q 011600 125 ATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV-KYCYEQKEPKFDPTVSQSYSNVSCSSTICTS 203 (481)
Q Consensus 125 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~-~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~ 203 (481)
..+|+. +..+.+|+++|+||||||++.|++||||+++||+|..|. ..|..+ +.|||++|+||+...
T Consensus 128 ~~v~L~---n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~--~~yd~s~SsT~~~~~-------- 194 (453)
T PTZ00147 128 DNVELK---DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETK--NLYDSSKSKTYEKDG-------- 194 (453)
T ss_pred Ceeecc---ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCC--CccCCccCcceEECC--------
Confidence 456665 345789999999999999999999999999999999994 347644 899999999998764
Q ss_pred ccccCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCCC---C--CCcceeeecCCCCCc
Q 011600 204 LQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGL---F--GGAAGLMGLGRDPIS 278 (481)
Q Consensus 204 ~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g~---~--~~~~GilGLg~~~~S 278 (481)
|.|.+.|++|+ +.|.+++|+|+|++ ..++ +.|+|+.+..+. + ...+||||||++.++
T Consensus 195 ---------------~~f~i~Yg~Gs-vsG~~~~DtVtiG~-~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S 256 (453)
T PTZ00147 195 ---------------TKVEMNYVSGT-VSGFFSKDLVTIGN-LSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLS 256 (453)
T ss_pred ---------------CEEEEEeCCCC-EEEEEEEEEEEECC-EEEE-EEEEEEEeccCcccccccccccceecccCCccc
Confidence 68999999997 79999999999998 5777 679998876552 1 258999999998765
Q ss_pred h------hhhhhhh---cCCceEEeccCCCCCCceEEeCCCCC----CCceEeecccCCCCCccEEEEEeEEEEccEEee
Q 011600 279 L------VSQTATK---YKKLFSYCLPSSASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLS 345 (481)
Q Consensus 279 l------~sQ~~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~----~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~ 345 (481)
. +.|+..+ ..++||+||++.....|.|+|||+|+ +++.|+|+.. ..+|.|+++ +.+|+...
T Consensus 257 ~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~-~~vg~~~~- 330 (453)
T PTZ00147 257 IGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD-VHFGNVSS- 330 (453)
T ss_pred cccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE-EEECCEec-
Confidence 3 3344332 26799999987655689999999874 6999999965 678999998 57776432
Q ss_pred ecccccccCCeEEeccCceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEEC
Q 011600 346 IAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVD 425 (481)
Q Consensus 346 ~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~ 425 (481)
....+||||||+++++|++++++|.+++.+.. .+.. +. |..+|.. ..+|+|+|+| +|.+++|+
T Consensus 331 ------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~~-~~------y~~~C~~-~~lP~~~f~f-~g~~~~L~ 393 (453)
T PTZ00147 331 ------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPFL-PL------YVTTCNN-TKLPTLEFRS-PNKVYTLE 393 (453)
T ss_pred ------CceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCCC-Ce------EEEeCCC-CCCCeEEEEE-CCEEEEEC
Confidence 11469999999999999999999999886531 1111 11 2233442 4689999999 68999999
Q ss_pred CCCcEEEe--CCCceEE-EEEeCCCCCCceeecHhhhceeEEEEECCCCEEEEEeCC
Q 011600 426 KTGIMYAS--NISQVCL-AFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGG 479 (481)
Q Consensus 426 ~~~~l~~~--~~~~~Cl-a~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 479 (481)
|++|+.+. .....|+ +|++.+...+.||||++|||++|+|||++++|||||++.
T Consensus 394 p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 394 PEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred HHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 99999763 2346798 687764344579999999999999999999999999874
No 18
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.4e-49 Score=391.13 Aligned_cols=253 Identities=45% Similarity=0.829 Sum_probs=222.0
Q ss_pred eEEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCCCCC
Q 011600 139 NYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASST 218 (481)
Q Consensus 139 ~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 218 (481)
+|+++|.||||||++.|++||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 599999999999999999999999999986
Q ss_pred ceeeEEcCCCCeEEEEEEEEEEEeCCCc-ccCceEEEEEEecCC-CCCCcceeeecCCCCCchhhhhhhhcCCceEEecc
Q 011600 219 CLYGIQYGDSSFSIGFFGKETLTLTPRD-VFPNFLFGCGQNNRG-LFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCLP 296 (481)
Q Consensus 219 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~-~~~~~~FGc~~~~~g-~~~~~~GilGLg~~~~Sl~sQ~~~~~~~~FS~cL~ 296 (481)
|.|.+.|+||+.+.|.+++|+|+|++.. .++++.|||+.+..+ .....+||||||+...|+++|+.... ++||+||.
T Consensus 31 ~~~~~~Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~ 109 (265)
T cd05476 31 CSYEYSYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLV 109 (265)
T ss_pred CceEeEeCCCceeeeeEEEEEEEecCCCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhccc-CeeEEEcc
Confidence 1678899999889999999999999833 789999999999875 22368999999999999999998874 89999998
Q ss_pred CC--CCCCceEEeCCCCC---CCceEeecccCCCCCccEEEEEeEEEEccEEeeecccccc-----cCCeEEeccCceee
Q 011600 297 SS--ASSTGHLTFGPGAS---KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFT-----TAGTIIDSGTVITR 366 (481)
Q Consensus 297 ~~--~~~~G~L~fGg~d~---~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~-----~~~~iiDSGT~~t~ 366 (481)
+. ....|+|+||++|+ +++.|+|++.++....+|.|+|++|+|+++.+.++...+. ...+||||||++++
T Consensus 110 ~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~ 189 (265)
T cd05476 110 PHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTY 189 (265)
T ss_pred CCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceE
Confidence 75 34589999999987 8999999998654467899999999999999876443221 15799999999999
Q ss_pred cCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEEeCCCceEEEEEeCC
Q 011600 367 LPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGNS 446 (481)
Q Consensus 367 Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~~~~~~Cla~~~~~ 446 (481)
||+++| |+|+|+|.+|.++.+++++|+++...+..|+++....
T Consensus 190 lp~~~~-------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~ 232 (265)
T cd05476 190 LPDPAY-------------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVCLAILSSS 232 (265)
T ss_pred cCcccc-------------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEEEEEecCC
Confidence 999887 8899999658999999999999876678999988753
Q ss_pred CCCCceeecHhhhceeEEEEECCCCEEEEEeCCC
Q 011600 447 DPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGGC 480 (481)
Q Consensus 447 ~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C 480 (481)
..+.+|||+.|||++|++||++++|||||+++|
T Consensus 233 -~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 233 -SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred -CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 456899999999999999999999999999999
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.2e-48 Score=407.24 Aligned_cols=301 Identities=22% Similarity=0.362 Sum_probs=238.6
Q ss_pred eeeccccCCccCceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcc-cccccCCCCCCCCCCCCccccccCCCccccc
Q 011600 125 ATLPAKDGSVVGAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCV-KYCYEQKEPKFDPTVSQSYSNVSCSSTICTS 203 (481)
Q Consensus 125 ~~~p~~~~~~~~~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~-~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~ 203 (481)
..+|+. ++.+.+|+++|.||||+|++.|++||||+++||+|..|. ..|..+ +.|||++|+||+...
T Consensus 127 ~~~~l~---d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~--~~yd~s~SsT~~~~~-------- 193 (450)
T PTZ00013 127 DVIELD---DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIK--NLYDSSKSKSYEKDG-------- 193 (450)
T ss_pred Cceeee---ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccC--CCccCccCcccccCC--------
Confidence 445664 345678999999999999999999999999999999994 358654 799999999998764
Q ss_pred ccccCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCCC---C--CCcceeeecCCCCCc
Q 011600 204 LQSATGNSPACASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGL---F--GGAAGLMGLGRDPIS 278 (481)
Q Consensus 204 ~~~~~~~~~~C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g~---~--~~~~GilGLg~~~~S 278 (481)
|.|.+.|++|+ +.|.+++|+|+|++ ..++ +.||++.+..+. + ..++||||||++.++
T Consensus 194 ---------------~~~~i~YG~Gs-v~G~~~~Dtv~iG~-~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s 255 (450)
T PTZ00013 194 ---------------TKVDITYGSGT-VKGFFSKDLVTLGH-LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLS 255 (450)
T ss_pred ---------------cEEEEEECCce-EEEEEEEEEEEECC-EEEc-cEEEEEEeccccccceecccccceecccCCccc
Confidence 69999999997 89999999999998 5666 689998776431 2 258999999998765
Q ss_pred h------hhhhhhh---cCCceEEeccCCCCCCceEEeCCCCC----CCceEeecccCCCCCccEEEEEeEEEEccEEee
Q 011600 279 L------VSQTATK---YKKLFSYCLPSSASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLS 345 (481)
Q Consensus 279 l------~sQ~~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~----~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~ 345 (481)
. +.|+..+ ..++||+||++.....|.|+|||+|+ +++.|+|+.. ..+|.|+++ +.+|.....
T Consensus 256 ~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~-v~~G~~~~~ 330 (450)
T PTZ00013 256 IGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGKQTMQ 330 (450)
T ss_pred cccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCc----CceEEEEEE-EEECceecc
Confidence 3 3455433 26789999987555689999999884 6899999975 679999998 677654321
Q ss_pred ecccccccCCeEEeccCceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEEC
Q 011600 346 IAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVD 425 (481)
Q Consensus 346 ~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~ 425 (481)
...+||||||+++++|+++++++.+++.... .+. .+ .|..+|.. ..+|+|+|+| +|.+++|+
T Consensus 331 -------~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~~-~~------~y~~~C~~-~~lP~i~F~~-~g~~~~L~ 392 (450)
T PTZ00013 331 -------KANVIVDSGTTTITAPSEFLNKFFANLNVIK--VPF-LP------FYVTTCDN-KEMPTLEFKS-ANNTYTLE 392 (450)
T ss_pred -------ccceEECCCCccccCCHHHHHHHHHHhCCee--cCC-CC------eEEeecCC-CCCCeEEEEE-CCEEEEEC
Confidence 1469999999999999999999998886431 111 11 13334442 4689999999 68999999
Q ss_pred CCCcEEEe--CCCceEE-EEEeCCCCCCceeecHhhhceeEEEEECCCCEEEEEeCC
Q 011600 426 KTGIMYAS--NISQVCL-AFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAGG 479 (481)
Q Consensus 426 ~~~~l~~~--~~~~~Cl-a~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 479 (481)
|++|+.+. ..+..|+ ++.+.+...+.||||++|||++|+|||++++|||||++.
T Consensus 393 p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 393 PEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred HHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 99998753 2346898 777654444679999999999999999999999999874
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=6.5e-47 Score=374.67 Aligned_cols=261 Identities=27% Similarity=0.415 Sum_probs=215.7
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCCCCCc
Q 011600 140 YIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTC 219 (481)
Q Consensus 140 Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c 219 (481)
|+++|+||||+|++.|++||||+++||+|+.|.. |..+..+.|||++|+|++..+ .|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~-~~~~~~~~y~~~~Sst~~~~~----------------------~~ 57 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPA-AQQGGHKLYDPSKSSTAKLLP----------------------GA 57 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCc-hhhccCCcCCCccCccceecC----------------------Cc
Confidence 7899999999999999999999999999999953 766666889999999998753 26
Q ss_pred eeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCC-CC--CCcceeeecCCCCCchh---------hhhhhh-
Q 011600 220 LYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG-LF--GGAAGLMGLGRDPISLV---------SQTATK- 286 (481)
Q Consensus 220 ~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g-~~--~~~~GilGLg~~~~Sl~---------sQ~~~~- 286 (481)
.|.+.|++|+.+.|.+++|+|+|++ ..++++.|||++...+ .+ ...+||||||+...+.. .++..+
T Consensus 58 ~~~i~Y~~G~~~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~ 136 (278)
T cd06097 58 TWSISYGDGSSASGIVYTDTVSIGG-VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSL 136 (278)
T ss_pred EEEEEeCCCCeEEEEEEEEEEEECC-EEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhc
Confidence 9999999998889999999999998 5899999999998765 22 36999999999876543 233222
Q ss_pred cCCceEEeccCCCCCCceEEeCCCCC----CCceEeecccCCCCCccEEEEEeEEEEccEEeeecccccccCCeEEeccC
Q 011600 287 YKKLFSYCLPSSASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGT 362 (481)
Q Consensus 287 ~~~~FS~cL~~~~~~~G~L~fGg~d~----~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~~~~~iiDSGT 362 (481)
..+.||+||.+ ...|+|+|||+|+ +++.|+|+..+ ..+|.|++++|+|+++....... ..+||||||
T Consensus 137 ~~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~~~----~~~iiDSGT 207 (278)
T cd06097 137 DAPLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSRSG----FSAIADTGT 207 (278)
T ss_pred cCceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceeecCC----ceEEeecCC
Confidence 14799999986 3479999999884 79999999763 57899999999999985432221 469999999
Q ss_pred ceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEEeCCCceEEEE
Q 011600 363 VITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAF 442 (481)
Q Consensus 363 ~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~~~~~~Cla~ 442 (481)
+++++|++++++|.+++.... +... ..+|.++|... +|+|+|+|
T Consensus 208 s~~~lP~~~~~~l~~~l~g~~--~~~~------~~~~~~~C~~~--~P~i~f~~-------------------------- 251 (278)
T cd06097 208 TLILLPDAIVEAYYSQVPGAY--YDSE------YGGWVFPCDTT--LPDLSFAV-------------------------- 251 (278)
T ss_pred chhcCCHHHHHHHHHhCcCCc--ccCC------CCEEEEECCCC--CCCEEEEE--------------------------
Confidence 999999999999998884221 1111 23577888753 89999999
Q ss_pred EeCCCCCCceeecHhhhceeEEEEECCCCEEEEEe
Q 011600 443 AGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 477 (481)
Q Consensus 443 ~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 477 (481)
.||||++|||++|+|||++++|||||+
T Consensus 252 --------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 --------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred --------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=8.1e-46 Score=369.48 Aligned_cols=269 Identities=22% Similarity=0.400 Sum_probs=223.7
Q ss_pred eEEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCCCCC
Q 011600 139 NYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASST 218 (481)
Q Consensus 139 ~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 218 (481)
.|+++|.||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 59999999999999999999999999997
Q ss_pred ceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCCCCCCcceeeecCCCCC-----------chhhhhhhh-
Q 011600 219 CLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPI-----------SLVSQTATK- 286 (481)
Q Consensus 219 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~~~~-----------Sl~sQ~~~~- 286 (481)
.|.+.|++|+.+.|.+++|+|+|++ ..++++.|||+++.. ..+||||||+... +++.|+..+
T Consensus 31 -~~~~~Y~~g~~~~G~~~~D~v~~g~-~~~~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g 104 (295)
T cd05474 31 -DFSISYGDGTSASGTWGTDTVSIGG-ATVKNLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQG 104 (295)
T ss_pred -eeEEEeccCCcEEEEEEEEEEEECC-eEecceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHHHHHHCC
Confidence 1477899988899999999999998 588999999999853 4799999999886 577888764
Q ss_pred --cCCceEEeccCCCCCCceEEeCCCCC----CCceEeecccCCC--CCccEEEEEeEEEEccEEeeecccccccCCeEE
Q 011600 287 --YKKLFSYCLPSSASSTGHLTFGPGAS----KSVQFTPLSSISG--GSSFYGLEMIGISVGGQKLSIAASVFTTAGTII 358 (481)
Q Consensus 287 --~~~~FS~cL~~~~~~~G~L~fGg~d~----~~~~~tpl~~~~~--~~~~y~V~l~gIsVgg~~l~~~~~~f~~~~~ii 358 (481)
.++.||+||.+.....|.|+|||+|. +++.|+|+..++. ...+|.|++++|+|+++.+..+... ....+||
T Consensus 105 ~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~-~~~~~ii 183 (295)
T cd05474 105 LIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLS-KNLPALL 183 (295)
T ss_pred cccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccC-CCccEEE
Confidence 25789999998655689999999874 6899999987542 2478999999999999987542211 1267999
Q ss_pred eccCceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEEeC----
Q 011600 359 DSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASN---- 434 (481)
Q Consensus 359 DSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~~---- 434 (481)
||||++++||+++|++|.+++.+.... .. .+|..+|..... |.|+|+| +|+++.|++++|+++..
T Consensus 184 DSGt~~~~lP~~~~~~l~~~~~~~~~~---~~------~~~~~~C~~~~~-p~i~f~f-~g~~~~i~~~~~~~~~~~~~~ 252 (295)
T cd05474 184 DSGTTLTYLPSDIVDAIAKQLGATYDS---DE------GLYVVDCDAKDD-GSLTFNF-GGATISVPLSDLVLPASTDDG 252 (295)
T ss_pred CCCCccEeCCHHHHHHHHHHhCCEEcC---CC------cEEEEeCCCCCC-CEEEEEE-CCeEEEEEHHHhEeccccCCC
Confidence 999999999999999999999876431 11 234455554445 9999999 67999999999998864
Q ss_pred CCceEE-EEEeCCCCCCceeecHhhhceeEEEEECCCCEEEEEeC
Q 011600 435 ISQVCL-AFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAG 478 (481)
Q Consensus 435 ~~~~Cl-a~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 478 (481)
....|+ +|.+.+. +.+|||++|||++|++||.+++|||||++
T Consensus 253 ~~~~C~~~i~~~~~--~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 253 GDGACYLGIQPSTS--DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CCCCeEEEEEeCCC--CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 367896 8887633 57999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.5e-44 Score=363.24 Aligned_cols=295 Identities=27% Similarity=0.466 Sum_probs=244.4
Q ss_pred eEEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCCCCC
Q 011600 139 NYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASST 218 (481)
Q Consensus 139 ~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 218 (481)
+|+++|.||||+|++.|++||||+.+||++..|...|.......|+|++|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~----------------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG----------------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE-----------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce-----------------------
Confidence 599999999999999999999999999999988542122344899999999998865
Q ss_pred ceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCCC---CCCcceeeecCCCC-------Cchhhhhhhhc-
Q 011600 219 CLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGL---FGGAAGLMGLGRDP-------ISLVSQTATKY- 287 (481)
Q Consensus 219 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g~---~~~~~GilGLg~~~-------~Sl~sQ~~~~~- 287 (481)
+.+.+.|++|+ ++|.+++|+|+|++ ..++++.||++....+. ....+||||||+.. .+++.|+..+.
T Consensus 58 ~~~~~~y~~g~-~~G~~~~D~v~ig~-~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~ 135 (317)
T PF00026_consen 58 KPFSISYGDGS-VSGNLVSDTVSIGG-LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGL 135 (317)
T ss_dssp EEEEEEETTEE-EEEEEEEEEEEETT-EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTS
T ss_pred eeeeeeccCcc-cccccccceEeeee-ccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhcc
Confidence 68999999998 99999999999998 68889999999997552 34789999999753 34566666652
Q ss_pred --CCceEEeccCCCCCCceEEeCCCCC----CCceEeecccCCCCCccEEEEEeEEEEccEEeeecccccccCCeEEecc
Q 011600 288 --KKLFSYCLPSSASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSG 361 (481)
Q Consensus 288 --~~~FS~cL~~~~~~~G~L~fGg~d~----~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~~~~~iiDSG 361 (481)
.++||++|.+.....|.|+|||+|+ ++++|+|+.. ..+|.|.+++|.++++....... ..++||||
T Consensus 136 i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~----~~~w~v~~~~i~i~~~~~~~~~~----~~~~~Dtg 207 (317)
T PF00026_consen 136 ISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVS----SGYWSVPLDSISIGGESVFSSSG----QQAILDTG 207 (317)
T ss_dssp SSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSS----TTTTEEEEEEEEETTEEEEEEEE----EEEEEETT
T ss_pred ccccccceeeeecccccchheeeccccccccCceeccCccc----ccccccccccccccccccccccc----eeeecccc
Confidence 6889999998765679999999774 6899999995 78899999999999993332221 23999999
Q ss_pred CceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEEeCCC--ceE
Q 011600 362 TVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNIS--QVC 439 (481)
Q Consensus 362 T~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~~~~--~~C 439 (481)
|++++||++++++|.+++...... ..|.++|.....+|.|+|+| ++.+++|++++|+.+.... ..|
T Consensus 208 t~~i~lp~~~~~~i~~~l~~~~~~-----------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~~~~~C 275 (317)
T PF00026_consen 208 TSYIYLPRSIFDAIIKALGGSYSD-----------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYIFKIEDGNGGYC 275 (317)
T ss_dssp BSSEEEEHHHHHHHHHHHTTEEEC-----------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHEEEESSTTSSEE
T ss_pred cccccccchhhHHHHhhhcccccc-----------eeEEEecccccccceEEEee-CCEEEEecchHhccccccccccee
Confidence 999999999999999999877432 35778888777899999999 6899999999999886433 389
Q ss_pred E-EEEeC--CCCCCceeecHhhhceeEEEEECCCCEEEEEeC
Q 011600 440 L-AFAGN--SDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAG 478 (481)
Q Consensus 440 l-a~~~~--~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 478 (481)
+ +|.+. ......+|||.+|||++|++||.+++|||||+|
T Consensus 276 ~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 276 YLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 7 66652 234568999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.1e-43 Score=350.78 Aligned_cols=264 Identities=33% Similarity=0.622 Sum_probs=221.3
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCC--CCCCCCCccccccCCCcccccccccCCCCCCCCCC
Q 011600 140 YIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPK--FDPTVSQSYSNVSCSSTICTSLQSATGNSPACASS 217 (481)
Q Consensus 140 Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~--f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~ 217 (481)
|+++|.||||+|++.|++||||+++||+|..|.. |..+.... |++..|+++...
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~-~~~~~~~~~~~~~~~s~~~~~~----------------------- 56 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTS-CSCQKHPRFKYDSSKSSTYKDT----------------------- 56 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCc-cccccCCCCccCccCCceeecC-----------------------
Confidence 7899999999999999999999999999999954 54443343 677777665443
Q ss_pred CceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCC--CCCCcceeeecCCCC------Cchhhhhhhhc--
Q 011600 218 TCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRG--LFGGAAGLMGLGRDP------ISLVSQTATKY-- 287 (481)
Q Consensus 218 ~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g--~~~~~~GilGLg~~~------~Sl~sQ~~~~~-- 287 (481)
.|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+ .....+||||||+.. .+++.|+..+.
T Consensus 57 ~~~~~~~Y~~g~-~~g~~~~D~v~~~~-~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i 134 (283)
T cd05471 57 GCTFSITYGDGS-VTGGLGTDTVTIGG-LTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLI 134 (283)
T ss_pred CCEEEEEECCCe-EEEEEEEeEEEECC-EEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCC
Confidence 389999999985 78999999999998 4789999999999875 234789999999998 78899988763
Q ss_pred -CCceEEeccCC--CCCCceEEeCCCCC----CCceEeecccCCCCCccEEEEEeEEEEccEEeeecccccccCCeEEec
Q 011600 288 -KKLFSYCLPSS--ASSTGHLTFGPGAS----KSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDS 360 (481)
Q Consensus 288 -~~~FS~cL~~~--~~~~G~L~fGg~d~----~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~~~~~iiDS 360 (481)
.++||+||.+. ....|.|+||++++ +++.|+|++.. ...+|.|.|++|.|+++....... ...+||||
T Consensus 135 ~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~~---~~~~iiDs 209 (283)
T cd05471 135 SSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISSSG---GGGAIVDS 209 (283)
T ss_pred CCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeeecCC---CcEEEEec
Confidence 58999999985 24589999999875 69999999884 367899999999999975111111 15699999
Q ss_pred cCceeecCHHHHHHHHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeEEEEEcCCeEEEECCCCcEEEeCCCceEE
Q 011600 361 GTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCL 440 (481)
Q Consensus 361 GT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~~~~~~Cl 440 (481)
||++++||+++|++|.+++.+.+.. ...|+...|.....+|.|+|+|
T Consensus 210 Gt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f------------------------ 256 (283)
T cd05471 210 GTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF------------------------ 256 (283)
T ss_pred CCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE------------------------
Confidence 9999999999999999999987542 2346777777778899999999
Q ss_pred EEEeCCCCCCceeecHhhhceeEEEEECCCCEEEEEe
Q 011600 441 AFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAA 477 (481)
Q Consensus 441 a~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 477 (481)
.+|||++|||++|++||.++++||||+
T Consensus 257 ----------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ----------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ----------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=8.3e-34 Score=258.89 Aligned_cols=159 Identities=51% Similarity=0.942 Sum_probs=130.6
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCCCCCc
Q 011600 140 YIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTC 219 (481)
Q Consensus 140 Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c 219 (481)
|+++|.||||+|++.|+|||||+++|+|| ..+.|+|++|+||+.++|.++.|...... .....|.+..|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSF-CPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSS-BTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccc-cccCCCCcCcc
Confidence 89999999999999999999999999998 23899999999999999999999987642 00112235789
Q ss_pred eeeEEcCCCCeEEEEEEEEEEEeCCC----cccCceEEEEEEecCCCCCCcceeeecCCCCCchhhhhhhhcCCceEEec
Q 011600 220 LYGIQYGDSSFSIGFFGKETLTLTPR----DVFPNFLFGCGQNNRGLFGGAAGLMGLGRDPISLVSQTATKYKKLFSYCL 295 (481)
Q Consensus 220 ~y~~~Ygdgs~~~G~~~~Dtltl~~~----~~~~~~~FGc~~~~~g~~~~~~GilGLg~~~~Sl~sQ~~~~~~~~FS~cL 295 (481)
.|.+.|+|++.+.|.+++|+|+++.. ..++++.|||++.+.+.+...+||||||++++||++|++....++|||||
T Consensus 70 ~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL 149 (164)
T PF14543_consen 70 PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSYCL 149 (164)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB
T ss_pred cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEEEC
Confidence 99999999999999999999999874 35789999999999998889999999999999999999888789999999
Q ss_pred cC-CCCCCceEEeCC
Q 011600 296 PS-SASSTGHLTFGP 309 (481)
Q Consensus 296 ~~-~~~~~G~L~fGg 309 (481)
++ .....|+|+||+
T Consensus 150 ~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 150 PSSSPSSSGFLSFGD 164 (164)
T ss_dssp -S-SSSSEEEEEECS
T ss_pred CCCCCCCCEEEEeCc
Confidence 99 445689999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.96 E-value=8.1e-29 Score=225.53 Aligned_cols=149 Identities=40% Similarity=0.706 Sum_probs=122.1
Q ss_pred cEEEEEeEEEEccEEeeeccccc----ccCCeEEeccCceeecCHHHHHHHHHHHHHhhhcCC--C-CCCCCcccceeec
Q 011600 329 FYGLEMIGISVGGQKLSIAASVF----TTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYP--T-APALSLLDTCYDF 401 (481)
Q Consensus 329 ~y~V~l~gIsVgg~~l~~~~~~f----~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~--~-~~~~~~~~~Cy~~ 401 (481)
+|+|+|++|+||++++++++..| ..+++||||||++|+||+++|++|+++|.+++.... + ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 59999999999999999999987 348999999999999999999999999999998653 2 3456778899999
Q ss_pred cC----CcccccCeEEEEEcCCeEEEECCCCcEEEeCCCceEEEEEeC-CCCCCceeecHhhhceeEEEEECCCCEEEEE
Q 011600 402 SK----YSTVTLPQISLFFSGGVEVSVDKTGIMYASNISQVCLAFAGN-SDPTDVSIFGNTQQHTLEVVYDVAGGKVGFA 476 (481)
Q Consensus 402 ~~----~~~~~~P~i~f~f~gg~~~~l~~~~~l~~~~~~~~Cla~~~~-~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa 476 (481)
+. .....+|+|+|||+||++++|++++|++....+.+|++|.+. .+..+.+|||+.+|++++++||++++||||+
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF~ 160 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGFA 160 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEEe
Confidence 87 355789999999998999999999999998888999999987 3345689999999999999999999999999
Q ss_pred e
Q 011600 477 A 477 (481)
Q Consensus 477 ~ 477 (481)
|
T Consensus 161 ~ 161 (161)
T PF14541_consen 161 P 161 (161)
T ss_dssp E
T ss_pred C
Confidence 7
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.90 E-value=3.7e-23 Score=175.55 Aligned_cols=105 Identities=29% Similarity=0.593 Sum_probs=91.6
Q ss_pred EEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCC-CCCCCCccccccCCCcccccccccCCCCCCCCCCCce
Q 011600 142 VTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKF-DPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCL 220 (481)
Q Consensus 142 ~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f-~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c~ 220 (481)
++|.||||||++.|++||||+++||+|++|.. |..+..+.| +|++|++++... |.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~-~~~~~~~~~~~~~~sst~~~~~-----------------------~~ 56 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQS-LAIYSHSSYDDPSASSTYSDNG-----------------------CT 56 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCC-cccccccccCCcCCCCCCCCCC-----------------------cE
Confidence 47999999999999999999999999999953 655555677 999999988754 79
Q ss_pred eeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCCCC---CCcceeeec
Q 011600 221 YGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLF---GGAAGLMGL 272 (481)
Q Consensus 221 y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g~~---~~~~GilGL 272 (481)
|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+.+ ...+|||||
T Consensus 57 ~~~~Y~~g~-~~g~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 57 FSITYGTGS-LSGGLSTDTVSIGD-IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEEeCCCe-EEEEEEEEEEEECC-EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999996 67999999999998 589999999999997743 468999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.68 E-value=0.00015 Score=59.11 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=65.9
Q ss_pred eEEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCCCCC
Q 011600 139 NYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASST 218 (481)
Q Consensus 139 ~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 218 (481)
.|++++.|+ .+++.+++|||++.+|+.-.-. ..+.. ...+ .
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~-~~l~~----~~~~--------------------------------~ 42 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELA-ERLGL----PLTL--------------------------------G 42 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHH-HHcCC----CccC--------------------------------C
Confidence 589999999 7999999999999999965422 11210 0000 0
Q ss_pred ceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCCCCCCcceeeecCC
Q 011600 219 CLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGR 274 (481)
Q Consensus 219 c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~ 274 (481)
....+...+|.........+.+++++ ..++++.+........ ..+||||+..
T Consensus 43 ~~~~~~~~~G~~~~~~~~~~~i~ig~-~~~~~~~~~v~d~~~~---~~~gIlG~d~ 94 (96)
T cd05483 43 GKVTVQTANGRVRAARVRLDSLQIGG-ITLRNVPAVVLPGDAL---GVDGLLGMDF 94 (96)
T ss_pred CcEEEEecCCCccceEEEcceEEECC-cEEeccEEEEeCCccc---CCceEeChHH
Confidence 24566677777666666789999998 5788888877766543 5899999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.43 E-value=0.097 Score=45.10 Aligned_cols=96 Identities=11% Similarity=0.149 Sum_probs=62.3
Q ss_pred CceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCC
Q 011600 136 GAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACA 215 (481)
Q Consensus 136 ~~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~ 215 (481)
.++.|++++.|. .+++.+++|||++.+-+..+--.. . ..++..-
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~-L------gl~~~~~--------------------------- 51 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQR-L------GLDLNRL--------------------------- 51 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHH-c------CCCcccC---------------------------
Confidence 368999999998 689999999999998875431110 1 0111110
Q ss_pred CCCceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCCCCCCcceeeecCC
Q 011600 216 SSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLGR 274 (481)
Q Consensus 216 ~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg~ 274 (481)
.-...+.=..|......+.-|.+++++ ..++|+++.+...... .+|+||+.+
T Consensus 52 --~~~~~~~ta~G~~~~~~~~l~~l~iG~-~~~~nv~~~v~~~~~~----~~~LLGm~f 103 (121)
T TIGR02281 52 --GYTVTVSTANGQIKAARVTLDRVAIGG-IVVNDVDAMVAEGGAL----SESLLGMSF 103 (121)
T ss_pred --CceEEEEeCCCcEEEEEEEeCEEEECC-EEEeCcEEEEeCCCcC----CceEcCHHH
Confidence 012233334565445556889999998 6888999877654321 379999863
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=94.95 E-value=0.18 Score=40.15 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=53.1
Q ss_pred EEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCCCCCcee
Q 011600 142 VTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACASSTCLY 221 (481)
Q Consensus 142 ~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c~y 221 (481)
+++.|+ .+++.+++|||++.+.+.-.-..+ . ...+.... ...
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~-l------~~~~~~~~-----------------------------~~~ 42 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKK-L------GLKPRPKS-----------------------------VPI 42 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHH-c------CCCCcCCc-----------------------------eeE
Confidence 356676 589999999999988775432211 0 01111000 122
Q ss_pred eEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEecCCCCCCcceeeecC
Q 011600 222 GIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNNRGLFGGAAGLMGLG 273 (481)
Q Consensus 222 ~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~~g~~~~~~GilGLg 273 (481)
.+.-.+|.........+.+++++ ..+.++.|-.... -...+||||+-
T Consensus 43 ~~~~~~g~~~~~~~~~~~i~ig~-~~~~~~~~~v~~~----~~~~~~iLG~d 89 (90)
T PF13650_consen 43 SVSGAGGSVTVYRGRVDSITIGG-ITLKNVPFLVVDL----GDPIDGILGMD 89 (90)
T ss_pred EEEeCCCCEEEEEEEEEEEEECC-EEEEeEEEEEECC----CCCCEEEeCCc
Confidence 33334455455556677899988 5777787766662 22578999973
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.56 E-value=0.29 Score=42.27 Aligned_cols=103 Identities=10% Similarity=0.105 Sum_probs=57.1
Q ss_pred EEEccEEeeecccccccCCeEEeccCceeecCHHHHHHHHHHHHHhhhcCC-CCCCCCcccceeeccCCcccccCeEEEE
Q 011600 337 ISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYP-TAPALSLLDTCYDFSKYSTVTLPQISLF 415 (481)
Q Consensus 337 IsVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~-~~~~~~~~~~Cy~~~~~~~~~~P~i~f~ 415 (481)
+.|+|.++. ++||||.+.+.++++..+++--.....- .+. ...+.... .+ ........+.
T Consensus 21 ~~Ing~~~~----------~LvDTGAs~s~Is~~~a~~lgl~~~~~~-~~~~~~~g~g~~-~~-------~g~~~~~~l~ 81 (124)
T cd05479 21 VEINGVPVK----------AFVDSGAQMTIMSKACAEKCGLMRLIDK-RFQGIAKGVGTQ-KI-------LGRIHLAQVK 81 (124)
T ss_pred EEECCEEEE----------EEEeCCCceEEeCHHHHHHcCCccccCc-ceEEEEecCCCc-EE-------EeEEEEEEEE
Confidence 567777643 8999999999999988776432111000 000 00000000 00 0112344455
Q ss_pred EcCCeEEEECCCCcEEEeCCCceEEEEEeCCCCCCceeecHhhhceeEEEEECCCCEEEE
Q 011600 416 FSGGVEVSVDKTGIMYASNISQVCLAFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGF 475 (481)
Q Consensus 416 f~gg~~~~l~~~~~l~~~~~~~~Cla~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGF 475 (481)
+ +|..+.+ + +.+.+. .....|||..||+.+..+.|+.+++|-|
T Consensus 82 i-~~~~~~~---~-----------~~Vl~~--~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 82 I-GNLFLPC---S-----------FTVLED--DDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred E-CCEEeee---E-----------EEEECC--CCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 5 3443221 1 122222 1334799999999999999999998854
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=88.94 E-value=0.46 Score=38.41 Aligned_cols=30 Identities=30% Similarity=0.301 Sum_probs=25.6
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeEeCCCc
Q 011600 140 YIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPC 171 (481)
Q Consensus 140 Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C 171 (481)
|++++.|+ .+++.+++||||+.+++.-+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~ 30 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTW 30 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHH
Confidence 46889998 7999999999999999976543
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=88.43 E-value=3.7 Score=35.29 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=26.5
Q ss_pred ceeEEEEEEecCCCceEEEEEEcCCCceeEeCC
Q 011600 137 AGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCE 169 (481)
Q Consensus 137 ~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~ 169 (481)
...+++++.|+ .+++.+++|||++.+++.-.
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 45688999999 78999999999999988543
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=83.57 E-value=2.8 Score=36.77 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=25.6
Q ss_pred ceeecHhhhceeEEEEECCCCEEEEEeC
Q 011600 451 VSIFGNTQQHTLEVVYDVAGGKVGFAAG 478 (481)
Q Consensus 451 ~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 478 (481)
..|||..+|+.+...-|..+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 4899999999999999999999999753
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=82.96 E-value=2.9 Score=35.08 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.5
Q ss_pred ceeecHhhhceeEEEEECCCCEE
Q 011600 451 VSIFGNTQQHTLEVVYDVAGGKV 473 (481)
Q Consensus 451 ~~IlG~~fl~~~~vvfD~~~~rI 473 (481)
..+||..||+.+-++.|..++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 57999999999999999988763
No 35
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=81.04 E-value=2.8 Score=32.32 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=29.1
Q ss_pred CceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCc
Q 011600 136 GAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPC 171 (481)
Q Consensus 136 ~~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C 171 (481)
..+.+++.+.|| .+.+.+++|||++...|..+-+
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 357899999999 5999999999999999876544
No 36
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=80.53 E-value=3.4 Score=35.47 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=28.4
Q ss_pred CccEEEEEeEEEEccEEeeecccccccCCeEEeccCceeecCHHHHHHH
Q 011600 327 SSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 375 (481)
Q Consensus 327 ~~~y~V~l~gIsVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l 375 (481)
..+|+++ +.|+|+++. ++||||.+.+.++++..++|
T Consensus 9 ~g~~~v~---~~InG~~~~----------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR----------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 5667665 678887542 99999999999999887665
No 37
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=79.51 E-value=38 Score=34.72 Aligned_cols=178 Identities=20% Similarity=0.246 Sum_probs=0.0
Q ss_pred EEEEEecCCC----ceE-EEEEEcCCCceeEeCCCcccccccCCCCC--CCCCCCCccccccCCCcccccccccCCCCCC
Q 011600 141 IVTVGIGTPK----KDL-SLIFDTGSDLTWTQCEPCVKYCYEQKEPK--FDPTVSQSYSNVSCSSTICTSLQSATGNSPA 213 (481)
Q Consensus 141 ~~~i~iGTP~----q~~-~vivDTGS~~~Wv~c~~C~~~C~~~~~~~--f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~ 213 (481)
++.|.|=-|. |.+ .|++||||.-+=|..+.-.. .+ =-|..+..-.++. .
T Consensus 25 ~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~-------~l~~~Lp~~t~~g~~la-----------------E 80 (370)
T PF11925_consen 25 TVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPS-------SLAGSLPQQTGGGAPLA-----------------E 80 (370)
T ss_pred eeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhch-------hhhccCCcccCCCcchh-----------------h
Q ss_pred CCCCCceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEEEEEEec-----------------CCCCCCcceeeecCCCC
Q 011600 214 CASSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLFGCGQNN-----------------RGLFGGAAGLMGLGRDP 276 (481)
Q Consensus 214 C~~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~FGc~~~~-----------------~g~~~~~~GilGLg~~~ 276 (481)
| ..|++|..| |-+-+-.|+|++ ....++++-...+. .-...+++||||+|.-.
T Consensus 81 C--------~~F~sgytW-GsVr~AdV~igg-e~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 81 C--------AQFASGYTW-GSVRTADVTIGG-ETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFP 150 (370)
T ss_pred h--------hhccCcccc-cceEEEEEEEcC-eeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCc
Q ss_pred -----------------------------Cchhhhhhhhc------CCceEEeccCCCCC-----CceEEeCC------C
Q 011600 277 -----------------------------ISLVSQTATKY------KKLFSYCLPSSASS-----TGHLTFGP------G 310 (481)
Q Consensus 277 -----------------------------~Sl~sQ~~~~~------~~~FS~cL~~~~~~-----~G~L~fGg------~ 310 (481)
..+-.|..... .+---+-|+.-+.. .|.|+||= .
T Consensus 151 ~DcG~~C~~sa~~~~YY~C~~~~sCt~t~v~~~~QV~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~ 230 (370)
T PF11925_consen 151 YDCGAACAQSALPGNYYSCPSGGSCTSTTVPLAQQVANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNA 230 (370)
T ss_pred cccCchhhcccCCCceEECCCCCCeecccchhhhcccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCc
Q ss_pred CCCCceEeecccCCCCCccEEEEEeEEEEccEEeeecccccccCCeEEeccCceeecCHH
Q 011600 311 ASKSVQFTPLSSISGGSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPD 370 (481)
Q Consensus 311 d~~~~~~tpl~~~~~~~~~y~V~l~gIsVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~ 370 (481)
-.+.....+... ..+.....+|-++.. ..||||+--.+++..
T Consensus 231 l~~~~~~~~~~~----~G~~tt~~~G~t~~~--------------sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 231 LPSGATVLTTDS----NGDFTTTFNGQTYSA--------------SFFDSGSNGYFFPDS 272 (370)
T ss_pred ccccceEEeecC----CceEEEEecCceeee--------------eeEecCCceeeccCC
No 38
>PF13650 Asp_protease_2: Aspartyl protease
Probab=79.29 E-value=2.4 Score=33.40 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=24.0
Q ss_pred EEEccEEeeecccccccCCeEEeccCceeecCHHHHHHH
Q 011600 337 ISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 375 (481)
Q Consensus 337 IsVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l 375 (481)
++|+|+++. ++||||.+.+.+.++.++++
T Consensus 3 v~vng~~~~----------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR----------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE----------EEEcCCCCcEEECHHHHHHc
Confidence 567776543 99999999999999988776
No 39
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=79.23 E-value=3.3 Score=33.28 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=25.5
Q ss_pred EEEEccEEeeecccccccCCeEEeccCceeecCHHHHHHH
Q 011600 336 GISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 375 (481)
Q Consensus 336 gIsVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l 375 (481)
.+.|+|+++. ..+|||++.+.++++.+..+
T Consensus 4 ~~~Ing~~i~----------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK----------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE----------EEEcCCcceEEeCHHHHHHh
Confidence 3678888764 88999999999999998765
No 40
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=77.82 E-value=7.1 Score=36.55 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=56.0
Q ss_pred CceeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccccCCCCCCCCCCCCccccccCCCcccccccccCCCCCCCC
Q 011600 136 GAGNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCYEQKEPKFDPTVSQSYSNVSCSSTICTSLQSATGNSPACA 215 (481)
Q Consensus 136 ~~~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~~~~~~~f~ps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~ 215 (481)
.+|+|.++..|- .|.+..++|||-+.+-+.-+.-.+ --||.+...
T Consensus 102 ~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R-------lGid~~~l~-------------------------- 146 (215)
T COG3577 102 RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR-------LGIDLNSLD-------------------------- 146 (215)
T ss_pred CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH-------hCCCccccC--------------------------
Confidence 579999999998 899999999999998886553321 234443211
Q ss_pred CCCceeeEEcCCCCeEEEEEEEEEEEeCCCcccCceEE
Q 011600 216 SSTCLYGIQYGDSSFSIGFFGKETLTLTPRDVFPNFLF 253 (481)
Q Consensus 216 ~~~c~y~~~Ygdgs~~~G~~~~Dtltl~~~~~~~~~~F 253 (481)
-++.+.-.+|....-.+--|.|.||+ ..++|+.=
T Consensus 147 ---y~~~v~TANG~~~AA~V~Ld~v~IG~-I~~~nV~A 180 (215)
T COG3577 147 ---YTITVSTANGRARAAPVTLDRVQIGG-IRVKNVDA 180 (215)
T ss_pred ---CceEEEccCCccccceEEeeeEEEcc-EEEcCchh
Confidence 25566667787555667789999998 56665543
No 41
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=75.60 E-value=5.7 Score=31.55 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=23.5
Q ss_pred EEEccEEeeecccccccCCeEEeccCceeecCHHHHHHH
Q 011600 337 ISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 375 (481)
Q Consensus 337 IsVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l 375 (481)
+.|+++++. ++||||++.+.++.+..+.+
T Consensus 7 v~i~~~~~~----------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPVR----------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 677776643 99999999999999877665
No 42
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=75.45 E-value=4 Score=33.23 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=22.6
Q ss_pred EEEEEecCCCceEEEEEEcCCCceeEeCC
Q 011600 141 IVTVGIGTPKKDLSLIFDTGSDLTWTQCE 169 (481)
Q Consensus 141 ~~~i~iGTP~q~~~vivDTGS~~~Wv~c~ 169 (481)
+++|.|. .+++.+++||||+.+-++.+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 3677777 58999999999999999755
No 43
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=74.64 E-value=7.7 Score=29.84 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=24.6
Q ss_pred EEEccEEeeecccccccCCeEEeccCceeecCHHHHHHH
Q 011600 337 ISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 375 (481)
Q Consensus 337 IsVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l 375 (481)
+.|+|..+. ++||||.+..+++++..+.|
T Consensus 13 ~~I~g~~~~----------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK----------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE----------EEEeCCCcceecCHHHHHHh
Confidence 667776653 99999999999999988877
No 44
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=64.17 E-value=8.5 Score=31.06 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=20.7
Q ss_pred EEEecCCCceEEEEEEcCCCceeEeCC
Q 011600 143 TVGIGTPKKDLSLIFDTGSDLTWTQCE 169 (481)
Q Consensus 143 ~i~iGTP~q~~~vivDTGS~~~Wv~c~ 169 (481)
.+.|+ .|.+.+++|||+|++-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45566 79999999999999999643
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=59.22 E-value=12 Score=29.67 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=24.1
Q ss_pred EEEccEEeeecccccccCCeEEeccCceeecCHHHHHHH
Q 011600 337 ISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTPL 375 (481)
Q Consensus 337 IsVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l 375 (481)
+.|+|+++. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~----------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV----------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE----------EEEECCCCeEEECHHHhhhc
Confidence 567777653 89999999999999888765
No 46
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=56.87 E-value=13 Score=29.62 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=20.4
Q ss_pred EEEecCCCceEEEEEEcCCCceeEeCCC
Q 011600 143 TVGIGTPKKDLSLIFDTGSDLTWTQCEP 170 (481)
Q Consensus 143 ~i~iGTP~q~~~vivDTGS~~~Wv~c~~ 170 (481)
.+.|. .+++.+++|||++.+-+.-..
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 34555 689999999999999996543
No 47
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=51.72 E-value=71 Score=29.00 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.5
Q ss_pred eEEeccCceeecCHHHHHHHH
Q 011600 356 TIIDSGTVITRLPPDAYTPLR 376 (481)
Q Consensus 356 ~iiDSGT~~t~Lp~~~y~~l~ 376 (481)
++||||++..+...+..+.|.
T Consensus 48 vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 48 VLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEeCCCccceeehhhHHhhC
Confidence 999999999998887776653
No 48
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=50.46 E-value=12 Score=30.32 Aligned_cols=26 Identities=15% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEccEEeeecccccccCCeEEeccCceeecCHHH
Q 011600 336 GISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDA 371 (481)
Q Consensus 336 gIsVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~ 371 (481)
.|.++|+.+. ++||||...+.++++.
T Consensus 9 ~v~i~g~~i~----------~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKIK----------ALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEEE----------EEEETTBSSEEESSGG
T ss_pred EEeECCEEEE----------EEEecCCCcceecccc
Confidence 3667777654 9999999999999754
No 49
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=44.00 E-value=27 Score=28.36 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.7
Q ss_pred eEEeccCceeecCHHHHHHHH
Q 011600 356 TIIDSGTVITRLPPDAYTPLR 376 (481)
Q Consensus 356 ~iiDSGT~~t~Lp~~~y~~l~ 376 (481)
+.+|||.+...+|...|+.+-
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 789999999999999887764
No 50
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=38.37 E-value=70 Score=30.14 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=28.6
Q ss_pred CCccEEEEEeEEEEccEEeeecccccccCCeEEeccCceeecCHHHHHH
Q 011600 326 GSSFYGLEMIGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTP 374 (481)
Q Consensus 326 ~~~~y~V~l~gIsVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~ 374 (481)
..++|.++ ..|+|+.+. .++|||.+.+.|+++.-+.
T Consensus 102 ~~GHF~a~---~~VNGk~v~----------fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 102 RDGHFEAN---GRVNGKKVD----------FLVDTGATSVALNEEDARR 137 (215)
T ss_pred CCCcEEEE---EEECCEEEE----------EEEecCcceeecCHHHHHH
Confidence 35667665 789999875 8999999999999876544
No 51
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=34.89 E-value=49 Score=28.60 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=23.2
Q ss_pred EEEEccEEeeecccccccCCeEEeccCceeecCHHHHHH
Q 011600 336 GISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTP 374 (481)
Q Consensus 336 gIsVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~ 374 (481)
.++++|+++. ++||||+..+.++.+..++
T Consensus 28 ~~~ing~~vk----------A~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 28 NCKINGVPVK----------AFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEEETTEEEE----------EEEETT-SS-EEEHHHHHH
T ss_pred EEEECCEEEE----------EEEeCCCCccccCHHHHHH
Confidence 3678888764 9999999999999998887
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=29.68 E-value=68 Score=29.16 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=22.8
Q ss_pred EEEEEecCCCceEEEEEEcCCCceeEeCC
Q 011600 141 IVTVGIGTPKKDLSLIFDTGSDLTWTQCE 169 (481)
Q Consensus 141 ~~~i~iGTP~q~~~vivDTGS~~~Wv~c~ 169 (481)
...+.++.-..++.++|||||....+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 35555666679999999999999888654
No 53
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=29.43 E-value=28 Score=24.89 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhcccch
Q 011600 4 LKFILSAYLLSLSLCYA 20 (481)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (481)
|||+|+++.|.++.|-.
T Consensus 1 MKY~lL~l~l~La~CqT 17 (55)
T PRK13859 1 MKYCLLCLALALAGCQT 17 (55)
T ss_pred CchhHHHHHHHHHhccc
Confidence 79999999998887743
No 54
>PRK14749 hypothetical protein; Provisional
Probab=27.18 E-value=32 Score=21.72 Aligned_cols=18 Identities=11% Similarity=0.019 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhcccchh
Q 011600 4 LKFILSAYLLSLSLCYAF 21 (481)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (481)
|||+.|+|=+.+++.++-
T Consensus 1 MWYfaWiLG~~lAc~f~i 18 (30)
T PRK14749 1 MWYLLWFVGILLMCSLST 18 (30)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 799999887776666543
No 55
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=26.36 E-value=4.6e+02 Score=26.95 Aligned_cols=106 Identities=11% Similarity=0.111 Sum_probs=59.7
Q ss_pred eEEEEccEEeeecccccccCCeEEeccCceeecCHHHHHH--HHHHHHHhhhcCCCCCCCCcccceeeccCCcccccCeE
Q 011600 335 IGISVGGQKLSIAASVFTTAGTIIDSGTVITRLPPDAYTP--LRTAFRQFMSKYPTAPALSLLDTCYDFSKYSTVTLPQI 412 (481)
Q Consensus 335 ~gIsVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~--l~~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~P~i 412 (481)
.++.++|.++. +.||||+-.+.+...-.+. |...+..+..+....-+......| +-.+
T Consensus 238 iN~~ing~~VK----------AfVDsGaq~timS~~Caer~gL~rlid~r~~g~a~gvg~~ki~g~----------Ih~~ 297 (380)
T KOG0012|consen 238 INCEINGVPVK----------AFVDSGAQTTIMSAACAERCGLNRLIDKRFQGEARGVGTEKILGR----------IHQA 297 (380)
T ss_pred EEEEECCEEEE----------EEEcccchhhhhhHHHHHHhChHHHhhhhhhccccCCCcccccce----------eEEE
Confidence 44667888765 8999999999888766654 333333332111111010000011 1112
Q ss_pred EEEEcCCeEEEECCCCcEEEeCCCceEE-EEEeCCCCCCceeecHhhhceeEEEEECCCCEEEEEeC
Q 011600 413 SLFFSGGVEVSVDKTGIMYASNISQVCL-AFAGNSDPTDVSIFGNTQQHTLEVVYDVAGGKVGFAAG 478 (481)
Q Consensus 413 ~f~f~gg~~~~l~~~~~l~~~~~~~~Cl-a~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 478 (481)
.+.+ ... ...|- .++.. ......||.-.|+.+--.-|++++++-|+..
T Consensus 298 ~lki--------~~~--------~l~c~ftV~d~--~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 298 QLKI--------EDL--------YLPCSFTVLDR--RDMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred EEEe--------ccE--------eeccceEEecC--CCcchhhhHHHHHhccceeecccCeEEecCC
Confidence 2222 111 12475 44433 2334789999999999999999999887653
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.92 E-value=49 Score=28.49 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=19.3
Q ss_pred CceeecHhhhceeEEEEECCCCEE
Q 011600 450 DVSIFGNTQQHTLEVVYDVAGGKV 473 (481)
Q Consensus 450 ~~~IlG~~fl~~~~vvfD~~~~rI 473 (481)
..-+||-..|+..-.++|...+++
T Consensus 94 ~~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 94 PEPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred cccchhhhhhhhccEEEcCCcceE
Confidence 344899999999999999876665
No 57
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=25.42 E-value=1.1e+02 Score=26.41 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=24.7
Q ss_pred eeEEEEEEecCCCceEEEEEEcCCCceeEeCCCcccccc
Q 011600 138 GNYIVTVGIGTPKKDLSLIFDTGSDLTWTQCEPCVKYCY 176 (481)
Q Consensus 138 ~~Y~~~i~iGTP~q~~~vivDTGS~~~Wv~c~~C~~~C~ 176 (481)
...|+++.|+ .+++.+++|||...+-+. ..|...|.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims-~~~a~r~g 58 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMS-KSCAERCG 58 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEE-HHHHHHTT
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccC-HHHHHHcC
Confidence 4577999999 799999999999988884 33544453
No 58
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=23.52 E-value=2.3e+02 Score=26.71 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=19.6
Q ss_pred CceeecHhhhceeEEEEECCCCEEEEEe
Q 011600 450 DVSIFGNTQQHTLEVVYDVAGGKVGFAA 477 (481)
Q Consensus 450 ~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 477 (481)
-..|||+.|+|.|+=..+.+ .+|-|..
T Consensus 91 ~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 91 IDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 35899999999887666554 4676653
No 59
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.24 E-value=62 Score=26.56 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=11.0
Q ss_pred CccHHHHHHHHHHhhcc
Q 011600 1 MGSLKFILSAYLLSLSL 17 (481)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (481)
|+|=.|+|++|||....
T Consensus 1 MaSK~~llL~l~LA~lL 17 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALL 17 (95)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 77767777776654433
Done!