BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011601
         (481 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SWT|A Chain A, Crystal Structure Of The Taurine Catabolism Dioxygenase,
           Taud From Mycobacterium Marinum
 pdb|3SWT|B Chain B, Crystal Structure Of The Taurine Catabolism Dioxygenase,
           Taud From Mycobacterium Marinum
          Length = 302

 Score = 28.9 bits (63), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 11/103 (10%)

Query: 184 DAVLNEWMKTMMDLPAGFRQAYEMGLVSSAQMVKFLAINARPTTTRFISRSLPQG-ISRA 242
           D V NE ++ + D    FRQA++     +   V    +   P T     R+L  G   R 
Sbjct: 161 DYVANEAVQALTDTQQAFRQAFQKPDFRTEHPV----VRVHPETG---ERTLLAGDFVRG 213

Query: 243 FIGRMLADPSFLYKLILEQAATIGCTVLWELENRKERIKQEWD 285
           F+G    + S L++L+  +  +   T+ W  E+    I   WD
Sbjct: 214 FVGLDSQESSALFELLQRRITSPENTIRWNWESGDVAI---WD 253


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,428,611
Number of Sequences: 62578
Number of extensions: 432288
Number of successful extensions: 772
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 16
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)