Query 011601
Match_columns 481
No_of_seqs 111 out of 141
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 11:31:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qyh_A CO-type nitrIle hydrata 69.6 2.6 9.1E-05 40.8 3.0 46 205-253 48-97 (226)
2 1ypw_A Transitional endoplasmi 68.2 1.1 3.6E-05 49.2 0.0 7 122-128 773-779 (806)
3 3hht_A NitrIle hydratase alpha 61.8 5.6 0.00019 38.3 3.6 48 205-255 37-88 (216)
4 1ugp_A NitrIle hydratase alpha 46.3 9.6 0.00033 36.4 2.4 48 204-254 27-78 (203)
5 3a8g_A NitrIle hydratase subun 45.1 6 0.0002 37.9 0.8 48 204-254 30-81 (207)
6 4fm4_A NitrIle hydratase alpha 44.8 9.7 0.00033 36.6 2.2 45 205-252 21-69 (209)
7 2zzd_C Thiocyanate hydrolase s 44.4 11 0.00038 36.8 2.6 46 204-252 38-86 (243)
8 3oux_B LEF-1, lymphoid enhance 33.0 31 0.0011 27.9 3.0 9 142-150 15-23 (67)
9 2ca6_A RAN GTPase-activating p 19.0 33 0.0011 32.5 1.0 24 141-164 338-361 (386)
10 3pgz_A Single-stranded DNA-bin 18.2 26 0.00087 32.9 0.0 38 114-151 150-190 (193)
No 1
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=69.60 E-value=2.6 Score=40.76 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=35.6
Q ss_pred HHcCCcCHHHHHHHHH-hccC--cc-hhHHHHhhcCcchhhhhhhhhccCchh
Q 011601 205 YEMGLVSSAQMVKFLA-INAR--PT-TTRFISRSLPQGISRAFIGRMLADPSF 253 (481)
Q Consensus 205 ~e~Glvssa~L~rFl~-L~~~--P~-~~~~l~R~lp~~~srgfR~RlLADP~F 253 (481)
+|.|+|+++.+.++++ ++.+ |. -++.+.|.+-. .+||.|||+||.=
T Consensus 48 ~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~D---p~FK~rLL~D~~a 97 (226)
T 3qyh_A 48 IEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVD---PAYKARLLADGTA 97 (226)
T ss_dssp HHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC---HHHHHHHHHCHHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCC---HHHHHHHHHCHHH
Confidence 6799999999999998 4333 32 26778887654 6999999999863
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=68.20 E-value=1.1 Score=49.20 Aligned_cols=7 Identities=29% Similarity=0.781 Sum_probs=0.0
Q ss_pred eecCCCC
Q 011601 122 LATGGGG 128 (481)
Q Consensus 122 l~~GgGg 128 (481)
+.+++++
T Consensus 773 ~~~~~~~ 779 (806)
T 1ypw_A 773 FPSGNQG 779 (806)
T ss_dssp -------
T ss_pred cCCcccc
Confidence 3333333
No 3
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=61.79 E-value=5.6 Score=38.32 Aligned_cols=48 Identities=21% Similarity=0.386 Sum_probs=36.6
Q ss_pred HHcCCcCHHHHHHHHHh-ccC--cc-hhHHHHhhcCcchhhhhhhhhccCchhHH
Q 011601 205 YEMGLVSSAQMVKFLAI-NAR--PT-TTRFISRSLPQGISRAFIGRMLADPSFLY 255 (481)
Q Consensus 205 ~e~Glvssa~L~rFl~L-~~~--P~-~~~~l~R~lp~~~srgfR~RlLADP~FLf 255 (481)
+|.|+|+++.+.++.+. +.+ |. -++.+.|.+-. .+||.|||+||.=..
T Consensus 37 ~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~D---p~FK~rLL~Dp~aAi 88 (216)
T 3hht_A 37 IEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTD---PAFKQRLLEDSETVL 88 (216)
T ss_dssp HHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHC---HHHHHHHHHCHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcC---HHHHHHHHHCHHHHH
Confidence 67999999999999986 333 32 26777887644 699999999997433
No 4
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=46.26 E-value=9.6 Score=36.41 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=35.8
Q ss_pred HHHcCCcCHHHHHHHHHhcc-C--c-chhHHHHhhcCcchhhhhhhhhccCchhH
Q 011601 204 AYEMGLVSSAQMVKFLAINA-R--P-TTTRFISRSLPQGISRAFIGRMLADPSFL 254 (481)
Q Consensus 204 A~e~Glvssa~L~rFl~L~~-~--P-~~~~~l~R~lp~~~srgfR~RlLADP~FL 254 (481)
.++.|+|+++.+.++.+... . | +-++.+.|.+-. .+||.|||+|+.=.
T Consensus 27 L~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~D---p~fk~~Ll~d~~aA 78 (203)
T 1ugp_A 27 LIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTD---PEFKKRLLADGTEA 78 (203)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC---HHHHHHHHHCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCC---HHHHHHHHhChHHH
Confidence 36799999999999988633 3 2 226677777644 58999999998643
No 5
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=45.12 E-value=6 Score=37.94 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=35.6
Q ss_pred HHHcCCcCHHHHHHHHHhc-cC--c-chhHHHHhhcCcchhhhhhhhhccCchhH
Q 011601 204 AYEMGLVSSAQMVKFLAIN-AR--P-TTTRFISRSLPQGISRAFIGRMLADPSFL 254 (481)
Q Consensus 204 A~e~Glvssa~L~rFl~L~-~~--P-~~~~~l~R~lp~~~srgfR~RlLADP~FL 254 (481)
-+|.|+|+++.+.++.+.. .. | +-++.+.|.+-. .+||.|||+|+.=.
T Consensus 30 l~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~D---P~Fk~rLL~D~~aA 81 (207)
T 3a8g_A 30 LDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTD---PEFRQLLLTDGTAA 81 (207)
T ss_dssp HHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC---HHHHHHHHHCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCC---HHHHHHHHHCHHHH
Confidence 3678999999999998853 33 2 226677887644 59999999998643
No 6
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=44.82 E-value=9.7 Score=36.55 Aligned_cols=45 Identities=16% Similarity=0.420 Sum_probs=34.4
Q ss_pred HHcCCcCHHHHHHHHH-hccC--c-chhHHHHhhcCcchhhhhhhhhccCch
Q 011601 205 YEMGLVSSAQMVKFLA-INAR--P-TTTRFISRSLPQGISRAFIGRMLADPS 252 (481)
Q Consensus 205 ~e~Glvssa~L~rFl~-L~~~--P-~~~~~l~R~lp~~~srgfR~RlLADP~ 252 (481)
+|.|+|+.+.+..|.+ ++.. | +-++.+.|.+-. ..||.|||+|+.
T Consensus 21 ~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~D---p~Fk~~Ll~D~~ 69 (209)
T 4fm4_A 21 KELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTD---PVFKAQLLSEGV 69 (209)
T ss_dssp HHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC---HHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCC---HHHHHHHHHHHH
Confidence 5789999999999988 3322 3 226778888654 699999999984
No 7
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=44.39 E-value=11 Score=36.80 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=34.3
Q ss_pred HHHcCCcCHHHHHHHHHh-ccC-c-chhHHHHhhcCcchhhhhhhhhccCch
Q 011601 204 AYEMGLVSSAQMVKFLAI-NAR-P-TTTRFISRSLPQGISRAFIGRMLADPS 252 (481)
Q Consensus 204 A~e~Glvssa~L~rFl~L-~~~-P-~~~~~l~R~lp~~~srgfR~RlLADP~ 252 (481)
.+|.|+|+++.+.++.+. +.. | +-++.+.|.+-. ..||.|||+|+.
T Consensus 38 L~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~D---P~fk~~Ll~d~~ 86 (243)
T 2zzd_C 38 AIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLD---PEYKKLCIEDGV 86 (243)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHC---HHHHHHHHHCHH
T ss_pred HHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCC---HHHHHHHHHChH
Confidence 478999999999998885 333 2 226778887644 589999999964
No 8
>3oux_B LEF-1, lymphoid enhancer-binding factor 1; WNT/beta-catenin signaling pathway, TCF, transcription phosphorylation, protein binding; 2.40A {Mus musculus} PDB: 3ouw_B
Probab=32.95 E-value=31 Score=27.88 Aligned_cols=9 Identities=22% Similarity=0.265 Sum_probs=4.3
Q ss_pred CCCCCCCCC
Q 011601 142 GGDDDGDDD 150 (481)
Q Consensus 142 GgdddGddd 150 (481)
||||.|..|
T Consensus 15 gdDDLGa~D 23 (67)
T 3oux_B 15 GDPELCATD 23 (67)
T ss_dssp CCTTTTCCC
T ss_pred CccccCCcc
Confidence 344555444
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=19.05 E-value=33 Score=32.49 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q 011601 141 DGGDDDGDDDDYFDDFDDGDEGDE 164 (481)
Q Consensus 141 gGgdddGddddy~d~~ddgd~gd~ 164 (481)
+..|+++++|+.++|++++||+++
T Consensus 338 ~~~d~~~e~e~e~eeeee~eee~~ 361 (386)
T 2ca6_A 338 DELDDMEELTDEEEEDEEEEAESQ 361 (386)
T ss_dssp CCCCSCC-----------------
T ss_pred hhcccccccccccccccccccccc
No 10
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=18.22 E-value=26 Score=32.91 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=0.0
Q ss_pred cccccCceeecCCCCCCCCCCCCCCCC---CCCCCCCCCCC
Q 011601 114 QQSETTPELATGGGGGDIGKKINHGGG---DGGDDDGDDDD 151 (481)
Q Consensus 114 ~~~~~~p~l~~GgGgG~~g~~~~~GGG---gGgdddGdddd 151 (481)
..+...|.-..||++.+.+.+.++||. +++.++..|||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T 3pgz_A 150 NQSSGAYSSVGFGDNSANQRDVFGSNNSQLGESFSHKLDDD 190 (193)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCCCCCCCCcCCCCCCCCCCcccCCCcccccccCC
Done!