Query 011601
Match_columns 481
No_of_seqs 111 out of 141
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 11:32:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011601.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011601hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v29a_ d.149.1.1 (A:) Cobalt- 76.9 0.92 6.7E-05 41.1 4.0 46 204-252 26-75 (203)
2 d1ugpa_ d.149.1.1 (A:) Cobalt- 70.0 1.3 9.5E-05 40.1 3.2 46 204-252 27-76 (203)
3 d2qdya1 d.149.1.1 (A:10-206) I 58.5 1.7 0.00012 39.2 1.7 45 205-252 22-70 (197)
4 d1qusa_ d.2.1.6 (A:) 36 kDa so 23.0 32 0.0023 32.2 4.2 60 201-288 102-161 (322)
5 d1rw6a_ a.47.4.1 (A:) CAPPD, a 14.8 24 0.0017 31.2 1.1 40 150-192 3-42 (192)
6 d1q60a_ d.288.1.1 (A:) General 12.8 42 0.0031 26.8 2.0 29 171-202 9-37 (99)
7 d1x3zb1 a.189.1.1 (B:253-309) 11.1 40 0.0029 24.3 1.2 28 229-261 29-56 (57)
8 d1bl0a1 a.4.1.8 (A:9-62) MarA 11.0 1.3E+02 0.0093 19.8 3.8 51 179-230 1-51 (54)
9 d1b0na1 a.34.1.1 (A:74-108) Si 10.7 87 0.0064 20.7 2.7 21 202-223 10-30 (35)
10 d2htia1 b.45.1.1 (A:10-165) Hy 9.6 49 0.0036 25.8 1.3 12 177-188 2-13 (156)
No 1
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=76.90 E-value=0.92 Score=41.12 Aligned_cols=46 Identities=22% Similarity=0.430 Sum_probs=36.8
Q ss_pred HHHcCCcCHHHHHHHHH-hccC--cc-hhHHHHhhcCcchhhhhhhhhccCch
Q 011601 204 AYEMGLVSSAQMVKFLA-INAR--PT-TTRFISRSLPQGISRAFIGRMLADPS 252 (481)
Q Consensus 204 A~e~Glvssa~L~rFl~-L~~~--P~-~~~~l~R~lp~~~srgfR~RlLADP~ 252 (481)
.+|.|+|+++.+.+.++ ++.+ |. -++.+.|.+-. ..||.|||+|+.
T Consensus 26 LieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~D---p~FK~rLL~D~~ 75 (203)
T d1v29a_ 26 LIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTD---PEFKQRLLEDPE 75 (203)
T ss_dssp HHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTC---HHHHHHHHHSHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcC---HHHHHHHHHCHH
Confidence 36899999999999998 4443 33 27889998755 699999999975
No 2
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=70.01 E-value=1.3 Score=40.10 Aligned_cols=46 Identities=20% Similarity=0.434 Sum_probs=36.4
Q ss_pred HHHcCCcCHHHHHHHHHh-ccC--cch-hHHHHhhcCcchhhhhhhhhccCch
Q 011601 204 AYEMGLVSSAQMVKFLAI-NAR--PTT-TRFISRSLPQGISRAFIGRMLADPS 252 (481)
Q Consensus 204 A~e~Glvssa~L~rFl~L-~~~--P~~-~~~l~R~lp~~~srgfR~RlLADP~ 252 (481)
-+|.|+|+++.+.++++. +.+ |.. ++.+.|.+-. ..||.|||+|+.
T Consensus 27 LieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~D---p~FK~rLL~D~~ 76 (203)
T d1ugpa_ 27 LIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTD---PEFKKRLLADGT 76 (203)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC---HHHHHHHHHCHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCC---HHHHHHHHHHHH
Confidence 368999999999999994 433 432 7788888654 699999999985
No 3
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=58.52 E-value=1.7 Score=39.16 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=35.5
Q ss_pred HHcCCcCHHHHHHHHHh-ccC--cch-hHHHHhhcCcchhhhhhhhhccCch
Q 011601 205 YEMGLVSSAQMVKFLAI-NAR--PTT-TRFISRSLPQGISRAFIGRMLADPS 252 (481)
Q Consensus 205 ~e~Glvssa~L~rFl~L-~~~--P~~-~~~l~R~lp~~~srgfR~RlLADP~ 252 (481)
+|.|+|+++.+.++++. +.+ |.. ++.+.|.+-. ..||.|||+||.
T Consensus 22 ieKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~D---p~FK~rLL~D~~ 70 (197)
T d2qdya1 22 DGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTD---PEFRQLLLTDGT 70 (197)
T ss_dssp HTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC---HHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCC---HHHHHHHHHHHH
Confidence 47999999999999984 554 322 7788888654 699999999985
No 4
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=22.95 E-value=32 Score=32.23 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=45.4
Q ss_pred HHHHHHcCCcCHHHHHHHHHhccCcchhHHHHhhcCcchhhhhhhhhccCchhHHHHHHHHHHhhhhhhhhhhhhcchhh
Q 011601 201 FRQAYEMGLVSSAQMVKFLAINARPTTTRFISRSLPQGISRAFIGRMLADPSFLYKLILEQAATIGCTVLWELENRKERI 280 (481)
Q Consensus 201 l~~A~e~Glvssa~L~rFl~L~~~P~~~~~l~R~lp~~~srgfR~RlLADP~FLfKL~iE~~I~i~~~~~aE~~~Rge~F 280 (481)
|.++-+.-.|++++++.++-+|.+ +-+....+ -+++.-++++.++.+|.+.|
T Consensus 102 l~~~e~~yGV~~~ii~aiwgvET~------yG~~~G~~----------------------~v~~aLaTLAf~~~rR~~ff 153 (322)
T d1qusa_ 102 LNRAWQVYGVPPEIIVGIIGVETR------WGRVMGKT----------------------RILDALATLSFNYPRRAEYF 153 (322)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHT------TTTCCCCE----------------------EHHHHHHHHHHSCGGGHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHhhhhc------hhhhcCCC----------------------cchhhhhhhhhcccchhhhh
Confidence 344444668889999999999987 45555443 37788889999999999999
Q ss_pred hhHHHHHH
Q 011601 281 KQEWDLAL 288 (481)
Q Consensus 281 ~~ElDfV~ 288 (481)
.+||--.+
T Consensus 154 ~~EL~a~L 161 (322)
T d1qusa_ 154 SGELETFL 161 (322)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 99986443
No 5
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.76 E-value=24 Score=31.19 Aligned_cols=40 Identities=25% Similarity=0.493 Sum_probs=27.7
Q ss_pred CCCCCCCCCCCCCCCCcchhhhhHHHHhhcHHHHHHHHHHHHh
Q 011601 150 DDYFDDFDDGDEGDEGGLFRRRKILEELFDRKFVDAVLNEWMK 192 (481)
Q Consensus 150 ddy~d~~ddgd~gd~~g~~r~r~~~~e~fdR~~i~aVL~E~~r 192 (481)
|-||..++++.| -..|.+-+.-++| .-|+-+..||+||..
T Consensus 3 D~Yf~~~~~~~E--h~~f~~Ak~rLee-~hr~k~~~VmkeW~e 42 (192)
T d1rw6a_ 3 DKYLETPGDENE--HAHFQKAKERLEA-KHRERMSQVMREWEE 42 (192)
T ss_dssp HHHHHTTSCSSS--SCHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CcccCCCCCCch--HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 457887776555 3345555666666 567889999999973
No 6
>d1q60a_ d.288.1.1 (A:) General transcription factor II-I {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.79 E-value=42 Score=26.82 Aligned_cols=29 Identities=24% Similarity=0.435 Sum_probs=19.7
Q ss_pred hhHHHHhhcHHHHHHHHHHHHhhccCchHHHH
Q 011601 171 RKILEELFDRKFVDAVLNEWMKTMMDLPAGFR 202 (481)
Q Consensus 171 r~~~~e~fdR~~i~aVL~E~~rt~~sLPaDl~ 202 (481)
|..+||+||+++-+|+ +-....-+|-...
T Consensus 9 R~~VeelF~~ky~eAL---G~~~~V~VPY~k~ 37 (99)
T d1q60a_ 9 KQKVENLFNEKCGEAL---GLKQAVKVPFALF 37 (99)
T ss_dssp HHHHHHHHHHHHHHHH---TCSSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHh---CCCCceecCHHHH
Confidence 5889999999997664 3344555665444
No 7
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.10 E-value=40 Score=24.34 Aligned_cols=28 Identities=25% Similarity=0.492 Sum_probs=20.2
Q ss_pred HHHHhhcCcchhhhhhhhhccCchhHHHHHHHH
Q 011601 229 RFISRSLPQGISRAFIGRMLADPSFLYKLILEQ 261 (481)
Q Consensus 229 ~~l~R~lp~~~srgfR~RlLADP~FLfKL~iE~ 261 (481)
+-++.-.| -+|+-+++||.-..-++.|-
T Consensus 29 e~ls~ryp-----~lre~im~npe~fismllea 56 (57)
T d1x3zb1 29 ENISARYP-----QLREHIMANPEVFVSMLLEA 56 (57)
T ss_dssp HHHHTTCH-----HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHhhH-----HHHHHHHhCHHHHHHHHHhh
Confidence 33444455 49999999999777777663
No 8
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=10.96 E-value=1.3e+02 Score=19.77 Aligned_cols=51 Identities=10% Similarity=0.140 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHhhccCchHHHHHHHHcCCcCHHHHHHHHHhccCcchhHH
Q 011601 179 DRKFVDAVLNEWMKTMMDLPAGFRQAYEMGLVSSAQMVKFLAINARPTTTRF 230 (481)
Q Consensus 179 dR~~i~aVL~E~~rt~~sLPaDl~~A~e~Glvssa~L~rFl~L~~~P~~~~~ 230 (481)
|+..|++|++--.+... =|-++.+-++.-.+|...+.|.|.=...=++..+
T Consensus 1 D~~~i~~v~~yI~~~~~-~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~tp~~Y 51 (54)
T d1bl0a1 1 DAITIHSILDWIEDNLE-SPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQY 51 (54)
T ss_dssp CHHHHHHHHHHHHTTTT-SCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHH
T ss_pred CHHHHHHHHHHHHhccC-CCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHH
Confidence 55667888887777774 5888888888888889899888875554444333
No 9
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=10.68 E-value=87 Score=20.69 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=16.0
Q ss_pred HHHHHcCCcCHHHHHHHHHhcc
Q 011601 202 RQAYEMGLVSSAQMVKFLAINA 223 (481)
Q Consensus 202 ~~A~e~Glvssa~L~rFl~L~~ 223 (481)
++|...| ||.+|...||+.++
T Consensus 10 keAM~SG-vSK~QFrEflef~k 30 (35)
T d1b0na1 10 RDAMTSG-VSKKQFREFLDYQK 30 (35)
T ss_dssp HHHHHSC-CCHHHHHHHHHHHH
T ss_pred HHHHHcc-CCHHHHHHHHHHHH
Confidence 4555554 67999999999775
No 10
>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus halodurans [TaxId: 86665]}
Probab=9.61 E-value=49 Score=25.77 Aligned_cols=12 Identities=33% Similarity=0.312 Sum_probs=4.8
Q ss_pred hhcHHHHHHHHH
Q 011601 177 LFDRKFVDAVLN 188 (481)
Q Consensus 177 ~fdR~~i~aVL~ 188 (481)
|.||++|+++|+
T Consensus 2 ~~D~~~i~~~L~ 13 (156)
T d2htia1 2 CKDEKKITEFLN 13 (156)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHh
Confidence 334444444433
Done!