BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011602
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ILV|A Chain A, Crystal Structure Of A Glutamine-Dependent Nad(+)
Synthetase From Cytophaga Hutchinsonii
Length = 634
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 128/475 (26%), Positives = 197/475 (41%), Gaps = 63/475 (13%)
Query: 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD 60
+ +++ +N +D++ N+KNI ++I AK A I PEL ITGYGCED FL
Sbjct: 3 LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDW 62
Query: 61 TVTHAWE-CLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLAND 119
A E C + + TD I S G+P YNC L N + K +LAN+
Sbjct: 63 VAETAIEYCFE--IAASCTD-ITVSLGLPXRIAGITYNCVCLVENGIVKGFSAKQFLANE 119
Query: 120 GNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFT 179
G + E RWFTAW ++ F L N++ PFG D + EICE+ +
Sbjct: 120 GVHYETRWFTAWP-RNHTTTF-LYNDVKY-------PFGDVLYNVKDARIGFEICEDAWR 170
Query: 180 PIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRL 239
G + +N S SH K R I + Y+Y+N G + GR
Sbjct: 171 TDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRX 230
Query: 240 YFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPS 299
+DG + G +I + + S K+V ++ A + D S
Sbjct: 231 IYDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATD-----------------------S 267
Query: 300 VAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAF--GPGCWLWDYLRRSGASGFLLPLSG 357
P + +L E+E F L+DY R+S + GF+L LSG
Sbjct: 268 AETPETVLTQDDL---------------EKEFEFWEATSLGLFDYXRKSRSKGFVLSLSG 312
Query: 358 GADSSSVAAIVGCMCQLVVKE------ISNGDEQVKADAIRIGHYANGEFPTDSREFAKR 411
GADSS+ A V + +KE + + + D + H F +++
Sbjct: 313 GADSSACAIXVAEXIRKGLKELGLTAFLQKSNXETLFDLPALQHLP---FEEQAKKITAV 369
Query: 412 IFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRP 466
T + + NS ET AK LA+ IG+ + S+D + + + + + +RP
Sbjct: 370 FLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVI-ERP 423
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
Length = 680
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 121/293 (41%), Gaps = 16/293 (5%)
Query: 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV 62
++VA C + D N ++ + + GA + + PEL ++GY ED L+ +
Sbjct: 12 FVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLL 71
Query: 63 THAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNY 122
+ L DL+ + G P+ YN V+ ++ + PK +L +
Sbjct: 72 DAVEDALLDLVTESADLLPVLVVGAPLRHRHRIYNTAVVIHRGAVLGVVPKSYLPTYREF 131
Query: 123 RELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI----QFLDTAVAAEICEELF 178
E R + ++ + V FG + + EICE++F
Sbjct: 132 YERRQMAPGDGERG----------TIRIGGADVAFGTDLLFAASDLPGFVLHVEICEDMF 181
Query: 179 TPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH-QGCDGG 237
P+PP A+ AL G V N SGS + + + R SA+ Y+Y+ +G
Sbjct: 182 VPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGESTT 241
Query: 238 RLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQ 290
L +DG + + NG ++A+ +F K V VA VD + + R + +F +
Sbjct: 242 DLAWDGQTMIWENGALLAESERFP-KGVRRSVADVDTELLRSERLRMGTFDDN 293
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Apo Form
pdb|3SEQ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEZ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SZG|A Chain A, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|B Chain B, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|C Chain C, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|D Chain D, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
Length = 680
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 120/293 (40%), Gaps = 16/293 (5%)
Query: 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV 62
++VA C + D N ++ + + GA + + PEL ++GY ED L+ +
Sbjct: 12 FVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLL 71
Query: 63 THAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNY 122
+ L DL+ + G P+ YN V+ ++ + PK +L +
Sbjct: 72 DAVEDALLDLVTESADLLPVLVVGAPLRHRHRIYNTAVVIHRGAVLGVVPKSYLPTYREF 131
Query: 123 RELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI----QFLDTAVAAEICEELF 178
E R + ++ + V FG + + EI E++F
Sbjct: 132 YERRQMAPGDGERG----------TIRIGGADVAFGTDLLFAASDLPGFVLHVEIAEDMF 181
Query: 179 TPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH-QGCDGG 237
P+PP A+ AL G V N SGS + + + R SA+ Y+Y+ +G
Sbjct: 182 VPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGESTT 241
Query: 238 RLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQ 290
L +DG + + NG ++A+ +F K V VA VD + + R + +F +
Sbjct: 242 DLAWDGQTMIWENGALLAESERFP-KGVRRSVADVDTELLRSERLRMGTFDDN 293
>pdb|3N05|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
pdb|3N05|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
Length = 590
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 90/383 (23%), Positives = 152/383 (39%), Gaps = 61/383 (15%)
Query: 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVT 63
L++A +++ D N + I + E GA + PE+ +TGY ED L V
Sbjct: 5 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVE 64
Query: 64 HAWECLKDL--------------LLG--DWTDGILCSFGMPVIKGSERYNCQVLCLNRKI 107
+ L++L L+G D ++ +G P G+ R VL R +
Sbjct: 65 ASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPA--GAPRNAAAVLHRGR-V 121
Query: 108 IMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDT 167
+ K L N G + E R+F +P + ++P ++
Sbjct: 122 ALTFAKHHLPNYGVFDEFRYF-------------VPGD--------TMP----IVRLHGV 156
Query: 168 AVAAEICEELFTP--IPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225
+A ICE+L+ P A A G+ + +NA S ++ K D R+ G
Sbjct: 157 DIALAICEDLWQDGGRVPAARSAGAGLLLSVNA--SPYERDKDDTRLELVRKRAQEAGCT 214
Query: 226 YMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284
Y G L FDG S VV +G+++A+ QFS V + DLD A
Sbjct: 215 TAYLAMIGGQ-DELVFDGDSIVVDRDGEVVARAPQFSEGCVVL-----DLDLPAAEAEPP 268
Query: 285 SSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLR 344
+ + +I + + + +++ +++ +EE+ L Y+
Sbjct: 269 TGVVDDG---LRIDRLVISEEPLPAYEAELAGGYADRLD---ADEEVYSALVVGLRAYVA 322
Query: 345 RSGASGFLLPLSGGADSSSVAAI 367
++G L+ LSGG DS+ VAAI
Sbjct: 323 KNGFRSVLIGLSGGIDSALVAAI 345
>pdb|2PZ8|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZ8|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZA|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZA|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZB|A Chain A, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|B Chain B, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|C Chain C, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|D Chain D, Nad+ Synthetase From Bacillus Anthracis
Length = 284
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 4/44 (9%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISN 381
+L DY++++GA GF+L +SGG DS+ + G + QL V+EI N
Sbjct: 29 FLKDYVKKTGAKGFVLGISGGQDST----LAGRLAQLAVEEIRN 68
>pdb|1NSY|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1NSY|B Chain B, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|2NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|2NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|1EE1|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1EE1|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1FYD|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IFX|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IFX|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1IH8|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
pdb|1KQP|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
Length = 271
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 30/126 (23%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
+L Y++++GA GF+L +SGG DS+ + G + QL V+ I + A+R+ H
Sbjct: 28 FLKQYVKKTGAKGFVLGISGGQDST----LAGRLAQLAVESIREEGGDAQFIAVRLPH-- 81
Query: 398 NGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSL 457
G++ + + LA K SW D I + VSAF
Sbjct: 82 ---------------------GTQQDEDDAQ-LALKFIKPDKSWKFD--IKSTVSAFSDQ 117
Query: 458 FQTLTG 463
+Q TG
Sbjct: 118 YQQETG 123
>pdb|1D9U|A Chain A, Bacteriophage Lambda Lysozyme Complexed With A
Chitohexasacharide
pdb|1D9U|B Chain B, Bacteriophage Lambda Lysozyme Complexed With A
Chitohexasacharide
pdb|3D3D|A Chain A, Bacteriophage Lambda Lysozyme Complexed With A
Chitohexasaccharide
pdb|3D3D|B Chain B, Bacteriophage Lambda Lysozyme Complexed With A
Chitohexasaccharide
Length = 154
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 105 RKIIMIRPKLWLANDGNYREL-RWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQ 163
RK++ + PKL G Y+ L RW+ A++++ L+DF ++ +VAL+Q I
Sbjct: 50 RKLVTLNPKLKSTGAGRYQLLSRWWDAYRKQLGLKDFSPKSQDAVALQQIKERGALPMID 109
Query: 164 FLDTAVAAEICEELFTPIP 182
D A + C ++ +P
Sbjct: 110 RGDIRQAIDRCSNIWASLP 128
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IVZ|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
Length = 262
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 45/284 (15%)
Query: 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV 62
++KVA +N L+ D N ++ I A + GA + + PEL TGY E T
Sbjct: 1 MVKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFE-------TR 53
Query: 63 THAWECLKDLLLGDWTDGIL---CSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLAND 119
+E + + G+ T ++ G+ ++ G+ + VL +++ P+ ++
Sbjct: 54 EEVFEIAQKIPEGETTTFLMDVARDTGVYIVAGTAEKDGDVLY--NSAVVVGPRGFI--- 108
Query: 120 GNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFT 179
G YR++ F +++K E P ++ + F GF++ V I + F
Sbjct: 109 GKYRKIHLF--YREKFFFE----PGDLGFRV------FDLGFMK-----VGVMIXFDWFF 151
Query: 180 PIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAF-ISATHSRGGVYMYSNHQGCDGGR 238
P LAL G +V +H + Y RA I A ++ VY + + +
Sbjct: 152 PESART-LALKGADVI-----AHPANLVMPYAPRAMPIRALENK--VYTVTADRVGEERG 203
Query: 239 LYFDGCSCVVV-NGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFR 281
L F G S + ++++ S+ + E+ VA++DL V R
Sbjct: 204 LKFIGKSLIASPKAEVLSMASE---TEEEVGVAEIDLSLVRNKR 244
>pdb|3FIU|A Chain A, Structure Of Nmn Synthetase From Francisella Tularensis
pdb|3FIU|B Chain B, Structure Of Nmn Synthetase From Francisella Tularensis
pdb|3FIU|C Chain C, Structure Of Nmn Synthetase From Francisella Tularensis
pdb|3FIU|D Chain D, Structure Of Nmn Synthetase From Francisella Tularensis
Length = 249
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADS---SSVAAIVGCMCQLVVKEISNGDEQVKADAIRIG 394
WL D A GF++ LSGG DS +S+A G ++ N Q DA+ +
Sbjct: 19 WLSDSCMNYPAEGFVIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQHQDMQDALELI 78
Query: 395 HYANGEFPTDSREFAKRIFYTVFMGSENSS---QETRMLAKK 433
N E T S + A Y F+ S S Q R L K
Sbjct: 79 EMLNIEHYTISIQPA----YEAFLASTQSFTNLQNNRQLVIK 116
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|B Chain B, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|C Chain C, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|D Chain D, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
Length = 262
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 103/276 (37%), Gaps = 43/276 (15%)
Query: 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVT 63
+KV L+ D N ++ I A + GA + + PEL TGY E D
Sbjct: 2 VKVGYIQXEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQ 61
Query: 64 HAWECLKDLLLGDWTD--GILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGN 121
E L + G+ G G+ YN V+ R I G
Sbjct: 62 QIPEGETTTFLXELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGYI-----------GK 110
Query: 122 YRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPI 181
YR++ F +++K E P ++ + F GF + V IC + F P
Sbjct: 111 YRKIHLF--YREKVFFE----PGDLGFKV------FDIGFAK-----VGVXICFDWFFPE 153
Query: 182 PPHADLALNGVEVFMNASGSHHQLRKLDYRIRAF-ISATHSRGGVYMYSNHQGCDGGRLY 240
LAL G E+ +H Y RA I A +R VY + + + L
Sbjct: 154 SART-LALKGAEII-----AHPANLVXPYAPRAXPIRALENR--VYTITADRVGEERGLK 205
Query: 241 FDGCSCVVV-NGDMIAQGSQFSLKDVEIVVAQVDLD 275
F G S + ++++ S+ + EI V ++DL+
Sbjct: 206 FIGKSLIASPKAEVLSIASE---TEEEIGVVEIDLN 238
>pdb|4F4H|A Chain A, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
pdb|4F4H|B Chain B, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
Length = 565
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 341 DYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGE 400
DY+ ++G G ++ LSGG DS+ V L V + G E+V+A + Y G
Sbjct: 293 DYIGKNGFPGAIIGLSGGVDSALV---------LAVAVDALGAERVRA-VMMPSRYTAGI 342
Query: 401 FPTDSREFAKRI 412
TD+ + A+R+
Sbjct: 343 STTDAADMARRV 354
>pdb|3DPI|A Chain A, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
pdb|3DPI|B Chain B, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
Length = 285
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYA 397
++ DYLR +G +L +SGG DSS+ G + QL V+ + + A+R+ + A
Sbjct: 36 FVADYLRTAGLRACVLGISGGIDSST----AGRLAQLAVERLRASGYDARFVAMRLPYGA 91
Query: 398 N 398
Sbjct: 92 Q 92
>pdb|2BBD|A Chain A, Crystal Structure Of The Stiv Mcp
pdb|2BBD|B Chain B, Crystal Structure Of The Stiv Mcp
pdb|2BBD|C Chain C, Crystal Structure Of The Stiv Mcp
pdb|2BBD|D Chain D, Crystal Structure Of The Stiv Mcp
Length = 350
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 284 ISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL 320
I S + +PS PYNL Q FNL S L
Sbjct: 38 IGSISNSGTAAVTLPSAPFPYNLVQTFNLSYEGSKTL 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,851,990
Number of Sequences: 62578
Number of extensions: 619904
Number of successful extensions: 1290
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1271
Number of HSP's gapped (non-prelim): 20
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)