Query 011602
Match_columns 481
No_of_seqs 333 out of 2545
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:11:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02339 NAD+ synthase (glutam 100.0 4.5E-89 9.7E-94 745.6 50.2 476 1-476 1-476 (700)
2 KOG2303 Predicted NAD synthase 100.0 1.8E-86 3.8E-91 659.1 32.7 477 1-478 2-478 (706)
3 PRK02628 nadE NAD synthetase; 100.0 2E-71 4.3E-76 608.3 44.8 413 2-461 11-443 (679)
4 PRK13981 NAD synthetase; Provi 100.0 4.4E-65 9.6E-70 548.1 42.7 357 4-462 1-358 (540)
5 cd07570 GAT_Gln-NAD-synth Glut 100.0 1.2E-48 2.6E-53 383.7 28.6 249 5-284 1-250 (261)
6 TIGR03381 agmatine_aguB N-carb 100.0 1.1E-45 2.4E-50 366.1 26.7 249 4-284 1-265 (279)
7 PRK10438 C-N hydrolase family 100.0 3.4E-45 7.4E-50 358.4 27.4 241 1-284 1-244 (256)
8 cd07587 ML_beta-AS mammalian-l 100.0 3.3E-45 7.1E-50 373.9 25.7 250 2-283 62-345 (363)
9 cd07586 nitrilase_8 Uncharacte 100.0 7.6E-45 1.6E-49 358.4 26.9 247 5-284 1-254 (269)
10 cd07576 R-amidase_like Pseudom 100.0 4.6E-45 1E-49 356.7 24.6 241 5-284 1-245 (254)
11 cd07568 ML_beta-AS_like mammal 100.0 2.3E-44 4.9E-49 358.4 26.9 251 2-283 2-269 (287)
12 COG0388 Predicted amidohydrola 100.0 4.3E-44 9.4E-49 354.1 25.0 252 3-284 2-256 (274)
13 PLN00202 beta-ureidopropionase 100.0 1.9E-43 4.1E-48 364.6 27.4 251 2-284 85-367 (405)
14 cd07580 nitrilase_2 Uncharacte 100.0 2.2E-43 4.8E-48 347.9 24.9 244 5-283 1-254 (268)
15 cd07583 nitrilase_5 Uncharacte 100.0 3.4E-43 7.5E-48 343.5 25.9 242 5-284 1-246 (253)
16 cd07569 DCase N-carbamyl-D-ami 100.0 3.8E-43 8.2E-48 352.2 26.4 252 2-283 2-284 (302)
17 cd07573 CPA N-carbamoylputresc 100.0 5.7E-43 1.2E-47 347.7 27.3 247 4-283 1-267 (284)
18 cd07572 nit Nit1, Nit 2, and r 100.0 4.2E-43 9.2E-48 345.0 25.3 245 5-284 1-258 (265)
19 PLN02747 N-carbamolyputrescine 100.0 4.3E-43 9.3E-48 350.8 25.7 252 2-283 5-274 (296)
20 PLN02504 nitrilase 100.0 6.5E-43 1.4E-47 355.3 25.4 248 1-284 22-307 (346)
21 cd07564 nitrilases_CHs Nitrila 100.0 9.1E-43 2E-47 348.6 25.4 249 4-284 1-279 (297)
22 cd07565 aliphatic_amidase alip 100.0 1.2E-42 2.6E-47 346.3 26.1 244 4-284 1-257 (291)
23 cd07584 nitrilase_6 Uncharacte 100.0 2E-42 4.3E-47 339.1 26.4 241 5-284 1-250 (258)
24 cd07585 nitrilase_7 Uncharacte 100.0 2.3E-42 5E-47 339.2 26.4 242 5-283 1-247 (261)
25 cd07581 nitrilase_3 Uncharacte 100.0 2.9E-42 6.2E-47 337.3 26.2 242 6-284 1-248 (255)
26 cd07579 nitrilase_1_R2 Second 100.0 1.9E-42 4.1E-47 343.0 24.9 233 5-279 1-255 (279)
27 cd07578 nitrilase_1_R1 First n 100.0 1.1E-42 2.4E-47 341.1 22.9 238 4-282 1-245 (258)
28 cd07575 Xc-1258_like Xanthomon 100.0 6.2E-42 1.3E-46 334.7 25.1 239 4-283 1-241 (252)
29 cd07567 biotinidase_like bioti 100.0 4.5E-42 9.7E-47 341.8 23.8 238 4-278 1-279 (299)
30 PLN02798 nitrilase 100.0 1.5E-41 3.2E-46 338.1 26.3 250 2-284 9-271 (286)
31 cd07577 Ph0642_like Pyrococcus 100.0 1.4E-41 3.1E-46 333.3 22.6 237 5-281 1-243 (259)
32 cd07582 nitrilase_4 Uncharacte 100.0 1E-40 2.2E-45 333.3 25.2 253 5-284 2-283 (294)
33 cd07197 nitrilase Nitrilase su 100.0 2.5E-40 5.3E-45 322.4 27.1 239 6-283 1-245 (253)
34 cd07574 nitrilase_Rim1_like Un 100.0 1.6E-40 3.4E-45 329.6 24.6 244 4-283 1-267 (280)
35 PRK13287 amiF formamidase; Pro 100.0 2.1E-39 4.5E-44 328.0 26.0 246 2-284 12-269 (333)
36 PRK13286 amiE acylamide amidoh 100.0 1.8E-39 4E-44 328.9 24.0 242 3-284 12-270 (345)
37 cd07571 ALP_N-acyl_transferase 100.0 5.6E-38 1.2E-42 309.8 21.2 223 4-276 1-251 (270)
38 cd07566 ScNTA1_like Saccharomy 100.0 1.7E-36 3.7E-41 302.0 21.5 230 5-248 1-264 (295)
39 KOG0807 Carbon-nitrogen hydrol 100.0 5E-36 1.1E-40 275.7 14.7 251 4-286 16-279 (295)
40 KOG0806 Carbon-nitrogen hydrol 100.0 3.8E-32 8.2E-37 262.2 14.7 251 2-286 12-282 (298)
41 PF00795 CN_hydrolase: Carbon- 100.0 3.3E-31 7.2E-36 246.5 12.4 176 5-200 1-186 (186)
42 PRK00302 lnt apolipoprotein N- 100.0 8.8E-30 1.9E-34 272.5 20.2 224 3-275 219-470 (505)
43 TIGR00546 lnt apolipoprotein N 100.0 5.1E-30 1.1E-34 266.1 15.9 204 3-253 159-391 (391)
44 KOG0805 Carbon-nitrogen hydrol 100.0 2.4E-28 5.2E-33 225.5 20.5 247 1-283 15-299 (337)
45 PRK12291 apolipoprotein N-acyl 99.9 5.5E-25 1.2E-29 228.9 20.1 188 4-235 195-406 (418)
46 KOG0808 Carbon-nitrogen hydrol 99.9 6.5E-24 1.4E-28 197.5 18.2 248 2-281 72-353 (387)
47 COG0815 Lnt Apolipoprotein N-a 99.8 6E-20 1.3E-24 194.9 18.3 231 3-273 227-479 (518)
48 PRK13825 conjugal transfer pro 99.8 7E-20 1.5E-24 188.2 17.6 171 22-231 208-387 (388)
49 PF02540 NAD_synthase: NAD syn 99.7 5.2E-18 1.1E-22 164.1 11.2 95 332-462 2-96 (242)
50 PTZ00323 NAD+ synthase; Provis 99.6 1E-15 2.2E-20 151.4 12.5 103 329-463 27-129 (294)
51 PRK00768 nadE NAD synthetase; 99.6 1.4E-15 3E-20 147.9 10.9 102 329-460 19-122 (268)
52 COG0171 NadE NAD synthase [Coe 99.6 4.9E-15 1.1E-19 143.9 11.2 103 328-462 5-107 (268)
53 cd00553 NAD_synthase NAD+ synt 99.6 2.3E-14 5E-19 139.8 12.1 97 328-460 3-99 (248)
54 PRK13980 NAD synthetase; Provi 99.5 1E-13 2.3E-18 136.4 11.2 96 328-459 10-105 (265)
55 PRK00876 nadE NAD synthetase; 99.3 3.9E-12 8.4E-17 127.6 10.5 91 329-455 13-104 (326)
56 TIGR00552 nadE NAD+ synthetase 99.2 7.4E-11 1.6E-15 115.2 10.6 90 331-456 5-94 (250)
57 COG1606 ATP-utilizing enzymes 98.9 2E-09 4.3E-14 102.0 8.1 75 338-451 9-83 (269)
58 COG0482 TrmU Predicted tRNA(5- 98.8 2.1E-08 4.5E-13 100.7 9.4 68 348-453 3-77 (356)
59 TIGR00268 conserved hypothetic 98.8 3.9E-08 8.4E-13 96.2 10.5 76 338-453 4-79 (252)
60 PF03054 tRNA_Me_trans: tRNA m 98.8 1.5E-08 3.3E-13 103.0 7.5 67 349-453 1-76 (356)
61 PLN02347 GMP synthetase 98.6 1.4E-07 3E-12 101.3 9.4 73 340-449 220-294 (536)
62 TIGR00884 guaA_Cterm GMP synth 98.5 2.3E-07 5E-12 93.2 8.2 76 336-451 7-83 (311)
63 PRK14665 mnmA tRNA-specific 2- 98.4 5.9E-07 1.3E-11 91.9 8.6 66 349-452 6-73 (360)
64 PRK00074 guaA GMP synthase; Re 98.4 7.4E-07 1.6E-11 95.6 8.1 82 330-451 200-282 (511)
65 COG0603 Predicted PP-loop supe 98.4 9.9E-07 2.2E-11 83.1 7.8 64 348-449 2-65 (222)
66 PRK00919 GMP synthase subunit 98.4 9.6E-07 2.1E-11 88.3 7.7 81 330-451 6-86 (307)
67 cd01997 GMP_synthase_C The C-t 98.3 1.8E-06 4E-11 86.0 8.3 63 350-449 1-64 (295)
68 TIGR00420 trmU tRNA (5-methyla 98.3 3E-06 6.4E-11 86.8 9.8 65 349-451 1-75 (352)
69 cd01996 Alpha_ANH_like_III Thi 98.3 4.3E-06 9.4E-11 75.2 9.5 72 350-458 3-75 (154)
70 PRK11106 queuosine biosynthesi 98.3 1.7E-06 3.7E-11 83.1 7.1 64 349-450 2-66 (231)
71 PRK04527 argininosuccinate syn 98.3 2.1E-06 4.5E-11 88.4 8.1 66 349-452 3-69 (400)
72 cd01990 Alpha_ANH_like_I This 98.2 2.7E-06 5.8E-11 80.3 7.5 63 351-450 1-63 (202)
73 PRK14664 tRNA-specific 2-thiou 98.2 3.3E-06 7.1E-11 86.4 8.3 63 349-452 6-68 (362)
74 KOG2805 tRNA (5-methylaminomet 98.2 5.6E-06 1.2E-10 80.6 9.4 74 348-459 5-92 (377)
75 TIGR03573 WbuX N-acetyl sugar 98.2 9.2E-06 2E-10 83.0 11.4 73 339-448 48-122 (343)
76 TIGR00364 exsB protein. This p 98.2 3.1E-06 6.7E-11 79.9 6.8 61 351-449 1-61 (201)
77 cd01998 tRNA_Me_trans tRNA met 98.2 7E-06 1.5E-10 84.1 9.5 64 350-451 1-72 (349)
78 PRK00143 mnmA tRNA-specific 2- 98.2 5.4E-06 1.2E-10 84.8 8.5 65 349-451 1-75 (346)
79 PRK01565 thiamine biosynthesis 98.1 7.4E-06 1.6E-10 85.3 8.4 69 349-455 177-251 (394)
80 PF06508 QueC: Queuosine biosy 98.1 6.1E-06 1.3E-10 78.3 6.9 65 350-452 1-66 (209)
81 PRK13820 argininosuccinate syn 98.1 8.4E-06 1.8E-10 84.1 8.2 68 348-452 2-69 (394)
82 PRK00509 argininosuccinate syn 98.0 1.2E-05 2.7E-10 83.0 8.3 66 348-452 2-68 (399)
83 cd01993 Alpha_ANH_like_II This 98.0 1.9E-05 4E-10 73.1 8.5 70 350-451 1-72 (185)
84 PF00733 Asn_synthase: Asparag 98.0 1E-05 2.2E-10 78.4 5.9 79 332-449 3-81 (255)
85 cd01994 Alpha_ANH_like_IV This 98.0 1.8E-05 3.9E-10 74.2 6.9 61 350-448 1-67 (194)
86 TIGR02432 lysidine_TilS_N tRNA 97.9 3.3E-05 7.1E-10 72.0 7.9 66 350-449 1-68 (189)
87 cd01991 Asn_Synthase_B_C The C 97.9 1.7E-05 3.6E-10 78.0 6.1 64 349-449 16-79 (269)
88 COG0519 GuaA GMP synthase, PP- 97.8 5.3E-05 1.1E-09 73.0 8.1 76 346-461 19-95 (315)
89 PRK14561 hypothetical protein; 97.8 3.6E-05 7.9E-10 72.2 6.9 60 350-450 2-61 (194)
90 PLN00200 argininosuccinate syn 97.8 5.7E-05 1.2E-09 78.2 8.3 65 349-451 6-71 (404)
91 cd01713 PAPS_reductase This do 97.8 6E-05 1.3E-09 68.2 7.4 68 350-452 1-68 (173)
92 TIGR00032 argG argininosuccina 97.8 6.8E-05 1.5E-09 77.6 8.1 63 350-451 1-64 (394)
93 PLN02549 asparagine synthase ( 97.8 8.2E-05 1.8E-09 81.0 9.0 88 329-448 208-295 (578)
94 TIGR01536 asn_synth_AEB aspara 97.7 0.0001 2.2E-09 78.6 8.5 82 331-449 238-319 (467)
95 PRK08576 hypothetical protein; 97.7 0.00017 3.6E-09 75.5 9.3 75 332-444 218-292 (438)
96 TIGR00342 thiazole biosynthesi 97.7 0.00016 3.4E-09 74.8 9.0 69 349-455 173-247 (371)
97 PRK09431 asnB asparagine synth 97.7 0.00016 3.5E-09 78.5 9.3 91 330-448 211-301 (554)
98 cd01992 PP-ATPase N-terminal d 97.7 0.00016 3.6E-09 66.9 8.1 62 350-445 1-64 (185)
99 PTZ00077 asparagine synthetase 97.6 0.00018 3.8E-09 78.6 9.3 99 329-457 220-320 (586)
100 cd01999 Argininosuccinate_Synt 97.6 0.00011 2.4E-09 75.8 7.4 64 351-452 1-65 (385)
101 KOG0571 Asparagine synthase (g 97.6 0.00028 6E-09 71.7 9.0 77 349-457 226-304 (543)
102 TIGR03108 eps_aminotran_1 exos 97.5 0.00021 4.6E-09 79.0 8.4 81 331-450 243-323 (628)
103 PF01171 ATP_bind_3: PP-loop f 97.5 0.00014 3.1E-09 67.4 5.2 66 350-449 1-68 (182)
104 cd01995 ExsB ExsB is a transcr 97.5 0.0006 1.3E-08 62.3 9.0 62 350-450 1-62 (169)
105 TIGR03104 trio_amidotrans aspa 97.5 0.0003 6.6E-09 77.1 8.1 80 330-448 244-326 (589)
106 PRK08384 thiamine biosynthesis 97.4 0.00052 1.1E-08 70.8 8.8 59 349-448 181-246 (381)
107 PRK08349 hypothetical protein; 97.4 0.00064 1.4E-08 64.0 8.5 19 350-368 2-20 (198)
108 cd01712 ThiI ThiI is required 97.4 0.00041 8.9E-09 64.0 6.5 19 350-368 1-19 (177)
109 PF02568 ThiI: Thiamine biosyn 97.3 0.00055 1.2E-08 64.2 7.2 72 349-458 4-83 (197)
110 TIGR03679 arCOG00187 arCOG0018 97.3 0.00056 1.2E-08 65.4 7.5 23 426-448 43-65 (218)
111 PRK10696 tRNA 2-thiocytidine b 97.3 0.00041 9E-09 68.1 5.9 67 349-448 30-96 (258)
112 PRK05253 sulfate adenylyltrans 97.3 0.0015 3.2E-08 65.4 9.7 75 339-449 20-94 (301)
113 PRK13795 hypothetical protein; 97.2 0.0014 3E-08 72.4 9.4 83 330-451 226-308 (636)
114 PRK13794 hypothetical protein; 97.0 0.0033 7.1E-08 67.1 10.1 75 336-448 236-310 (479)
115 PRK10660 tilS tRNA(Ile)-lysidi 96.9 0.0023 4.9E-08 67.6 7.7 76 338-448 7-84 (436)
116 COG0037 MesJ tRNA(Ile)-lysidin 96.9 0.0024 5.3E-08 63.7 7.6 75 341-451 12-90 (298)
117 PF01507 PAPS_reduct: Phosphoa 96.8 0.0054 1.2E-07 55.8 8.6 65 350-452 1-65 (174)
118 COG0367 AsnB Asparagine syntha 96.8 0.0028 6E-08 68.8 7.6 81 330-448 210-294 (542)
119 KOG1622 GMP synthase [Nucleoti 96.8 0.0068 1.5E-07 62.2 9.3 77 335-451 220-297 (552)
120 PRK02090 phosphoadenosine phos 96.6 0.0085 1.8E-07 58.2 8.6 72 339-449 32-103 (241)
121 PRK08557 hypothetical protein; 96.6 0.013 2.8E-07 61.3 10.0 81 330-448 161-243 (417)
122 cd01986 Alpha_ANH_like Adenine 96.5 0.0054 1.2E-07 51.2 5.6 18 351-368 1-18 (103)
123 COG0137 ArgG Argininosuccinate 96.4 0.01 2.2E-07 60.3 7.9 66 348-451 4-70 (403)
124 PRK01269 tRNA s(4)U8 sulfurtra 96.4 0.011 2.3E-07 63.5 8.1 68 349-454 178-251 (482)
125 PRK05370 argininosuccinate syn 96.3 0.011 2.3E-07 61.6 7.5 67 347-451 10-77 (447)
126 TIGR00289 conserved hypothetic 96.3 0.012 2.7E-07 56.2 7.3 25 425-449 44-68 (222)
127 PF00764 Arginosuc_synth: Argi 96.1 0.011 2.4E-07 60.9 6.5 63 352-452 1-64 (388)
128 TIGR02039 CysD sulfate adenyly 96.0 0.037 8.1E-07 55.1 9.2 67 349-449 20-86 (294)
129 COG1365 Predicted ATPase (PP-l 95.8 0.011 2.5E-07 55.0 4.3 56 349-445 61-116 (255)
130 COG0301 ThiI Thiamine biosynth 95.6 0.052 1.1E-06 55.8 8.6 72 349-458 176-254 (383)
131 PRK12563 sulfate adenylyltrans 95.6 0.076 1.6E-06 53.3 9.6 67 348-448 37-103 (312)
132 TIGR00434 cysH phosophoadenyly 95.3 0.11 2.5E-06 49.2 9.4 62 349-448 14-75 (212)
133 COG2117 Predicted subunit of t 94.9 0.054 1.2E-06 48.4 5.5 58 351-448 3-60 (198)
134 TIGR02057 PAPS_reductase phosp 94.8 0.2 4.3E-06 48.2 9.7 61 348-445 25-87 (226)
135 cd01984 AANH_like Adenine nucl 93.7 0.27 5.8E-06 39.2 6.9 54 351-445 1-54 (86)
136 KOG1706 Argininosuccinate synt 93.7 0.16 3.5E-06 50.0 6.3 68 347-456 4-71 (412)
137 COG0175 CysH 3'-phosphoadenosi 93.5 0.39 8.5E-06 47.2 8.9 68 349-454 40-107 (261)
138 PRK06850 hypothetical protein; 90.0 1.5 3.2E-05 47.1 9.1 38 331-369 18-55 (507)
139 TIGR03183 DNA_S_dndC putative 89.4 1.1 2.4E-05 47.3 7.6 20 349-368 14-33 (447)
140 TIGR00290 MJ0570_dom MJ0570-re 89.3 1.1 2.4E-05 42.9 6.8 22 427-448 46-67 (223)
141 COG2102 Predicted ATPases of P 87.5 2 4.3E-05 40.8 7.0 35 427-461 47-81 (223)
142 PF01902 ATP_bind_4: ATP-bindi 85.6 0.97 2.1E-05 43.2 4.0 35 428-462 47-81 (218)
143 KOG0573 Asparagine synthase [A 83.9 0.73 1.6E-05 47.9 2.4 21 348-368 250-270 (520)
144 COG3969 Predicted phosphoadeno 77.8 4.5 9.9E-05 40.8 5.6 25 346-370 25-49 (407)
145 PLN02309 5'-adenylylsulfate re 63.3 30 0.00065 36.9 8.2 31 415-445 138-168 (457)
146 TIGR00424 APS_reduc 5'-adenyly 61.2 35 0.00075 36.5 8.2 32 414-445 142-173 (463)
147 TIGR02055 APS_reductase thiore 59.7 21 0.00046 33.1 5.8 33 414-446 20-52 (191)
148 TIGR00542 hxl6Piso_put hexulos 58.3 30 0.00066 33.9 6.9 62 19-85 90-151 (279)
149 PRK13210 putative L-xylulose 5 57.7 32 0.00069 33.6 7.0 61 19-84 90-150 (284)
150 PRK13209 L-xylulose 5-phosphat 55.1 32 0.00069 33.7 6.5 61 19-84 95-155 (283)
151 KOG2840 Uncharacterized conser 52.5 34 0.00074 34.5 6.0 74 349-452 52-125 (347)
152 PRK09856 fructoselysine 3-epim 49.0 56 0.0012 31.8 7.1 63 18-85 85-147 (275)
153 cd07581 nitrilase_3 Uncharacte 44.9 99 0.0021 29.6 8.0 71 185-257 24-107 (255)
154 cd00019 AP2Ec AP endonuclease 42.5 1E+02 0.0022 30.1 7.8 62 18-85 80-141 (279)
155 PF01261 AP_endonuc_2: Xylose 42.5 33 0.00071 31.3 4.1 62 21-85 69-130 (213)
156 cd07568 ML_beta-AS_like mammal 42.5 83 0.0018 30.8 7.2 69 186-256 38-122 (287)
157 cd07572 nit Nit1, Nit 2, and r 41.5 1.4E+02 0.0031 28.6 8.6 71 185-256 25-109 (265)
158 PLN02798 nitrilase 40.9 1.3E+02 0.0029 29.5 8.4 70 186-257 37-120 (286)
159 cd07582 nitrilase_4 Uncharacte 40.5 96 0.0021 30.7 7.3 67 190-257 41-125 (294)
160 cd07584 nitrilase_6 Uncharacte 40.2 1.3E+02 0.0027 28.9 8.0 70 186-257 27-112 (258)
161 TIGR03381 agmatine_aguB N-carb 39.9 1.1E+02 0.0023 29.7 7.5 70 185-257 26-111 (279)
162 COG1091 RfbD dTDP-4-dehydrorha 38.9 68 0.0015 31.9 5.8 65 175-245 34-108 (281)
163 PF10087 DUF2325: Uncharacteri 38.7 69 0.0015 26.0 5.0 42 188-234 45-86 (97)
164 PRK09997 hydroxypyruvate isome 37.3 1.3E+02 0.0028 29.0 7.5 63 17-84 79-141 (258)
165 cd07388 MPP_Tt1561 Thermus the 36.6 1.1E+02 0.0025 29.2 6.8 68 3-87 4-71 (224)
166 COG1126 GlnQ ABC-type polar am 36.5 67 0.0014 30.8 5.0 77 28-116 146-223 (240)
167 TIGR03234 OH-pyruv-isom hydrox 33.6 2.3E+02 0.0051 27.0 8.7 59 22-85 83-141 (254)
168 PLN00202 beta-ureidopropionase 32.1 1.6E+02 0.0035 30.9 7.6 69 186-257 121-207 (405)
169 PRK15018 1-acyl-sn-glycerol-3- 31.5 58 0.0013 31.6 3.9 34 15-48 118-151 (245)
170 COG2205 KdpD Osmosensitive K+ 31.3 2.4E+02 0.0052 32.3 9.0 77 349-459 249-331 (890)
171 cd07576 R-amidase_like Pseudom 31.1 2E+02 0.0044 27.3 7.8 70 185-257 26-107 (254)
172 PF09587 PGA_cap: Bacterial ca 30.5 3.3E+02 0.0072 26.1 9.2 94 160-254 122-247 (250)
173 PRK12358 putative 6-phosphoglu 30.2 41 0.0009 32.4 2.7 35 326-362 7-41 (239)
174 KOG0733 Nuclear AAA ATPase (VC 29.9 1.6E+02 0.0035 32.7 7.1 38 429-466 238-283 (802)
175 cd07566 ScNTA1_like Saccharomy 29.4 2.5E+02 0.0053 28.0 8.2 67 190-257 35-117 (295)
176 cd07197 nitrilase Nitrilase su 28.5 2.3E+02 0.0051 26.6 7.7 69 185-256 25-107 (253)
177 cd07583 nitrilase_5 Uncharacte 28.4 2.4E+02 0.0053 26.8 7.8 69 186-257 27-107 (253)
178 PLN02747 N-carbamolyputrescine 28.2 1.7E+02 0.0038 28.8 6.9 69 185-256 32-116 (296)
179 PRK12677 xylose isomerase; Pro 28.1 2.8E+02 0.006 28.9 8.5 77 4-84 81-176 (384)
180 KOG3147 6-phosphogluconolacton 27.9 46 0.001 32.2 2.4 35 324-358 13-49 (252)
181 COG0363 NagB 6-phosphogluconol 27.8 49 0.0011 32.0 2.7 41 325-368 6-48 (238)
182 PRK09762 galactosamine-6-phosp 25.9 55 0.0012 31.4 2.7 34 326-363 7-40 (232)
183 TIGR01198 pgl 6-phosphoglucono 25.3 65 0.0014 30.9 3.1 35 327-363 4-40 (233)
184 cd07587 ML_beta-AS mammalian-l 24.9 2.4E+02 0.0053 29.0 7.4 69 186-256 98-185 (363)
185 COG4598 HisP ABC-type histidin 24.2 2.8E+02 0.006 26.1 6.6 70 27-107 161-230 (256)
186 cd07573 CPA N-carbamoylputresc 23.9 3E+02 0.0066 26.6 7.7 71 185-257 26-112 (284)
187 COG4825 Uncharacterized membra 23.9 1.6E+02 0.0035 29.4 5.3 103 338-452 198-310 (395)
188 PF14459 Prok-E2_C: Prokaryoti 23.5 3.6E+02 0.0079 22.7 6.6 58 424-481 12-72 (131)
189 cd07567 biotinidase_like bioti 23.4 3E+02 0.0064 27.5 7.5 45 212-257 90-145 (299)
190 cd03030 GRX_SH3BGR Glutaredoxi 23.0 2.1E+02 0.0046 23.2 5.2 48 415-463 3-53 (92)
191 smart00642 Aamy Alpha-amylase 22.8 1.7E+02 0.0037 26.5 5.1 69 21-90 17-93 (166)
192 TIGR02631 xylA_Arthro xylose i 22.4 4.8E+02 0.01 27.1 9.0 64 19-84 111-177 (382)
193 PRK09739 hypothetical protein; 22.1 3.8E+02 0.0082 24.7 7.5 39 1-42 1-40 (199)
194 PRK09989 hypothetical protein; 21.9 2.7E+02 0.0059 26.7 6.8 61 18-84 80-141 (258)
195 cd07571 ALP_N-acyl_transferase 21.7 2.1E+02 0.0046 27.8 6.0 69 187-256 35-105 (270)
196 cd07564 nitrilases_CHs Nitrila 21.4 4.1E+02 0.0089 26.2 8.1 70 185-257 27-121 (297)
197 PRK10490 sensor protein KdpD; 21.3 5.4E+02 0.012 30.0 10.1 47 413-459 281-333 (895)
198 COG1134 TagH ABC-type polysacc 21.1 2.1E+02 0.0045 27.9 5.5 65 33-108 162-226 (249)
199 smart00563 PlsC Phosphate acyl 20.4 1.3E+02 0.0029 24.2 3.7 28 20-48 60-87 (118)
No 1
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=4.5e-89 Score=745.64 Aligned_cols=476 Identities=77% Similarity=1.259 Sum_probs=420.4
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCC
Q 011602 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (481)
Q Consensus 1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (481)
|++||||++|++++.+|+++|+++|+++|++|+++|||||||||+++|||+++|++.+.++.+.+.+++++|++.+++++
T Consensus 1 ~~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl~~~~~~~~~~~~~L~~La~~a~~~~ 80 (700)
T PLN02339 1 MRLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFLELDTVTHSWECLAEILVGDLTDG 80 (700)
T ss_pred CceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHHhhChhHHHHHHHHHHHHHhhcccCC
Confidence 88999999999999999999999999999999999999999999999999999998888888778899999999887889
Q ss_pred eEEEEcceeeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccce
Q 011602 81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (481)
Q Consensus 81 i~iivG~~~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~ 160 (481)
+++++|+|+..++++|||++++.+|+|++.|+|+|||+|++|+|+|||+||+.....+.+.+|..+..+.|+..+|||+.
T Consensus 81 i~vvvG~p~~~~~~lYN~a~vi~~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~vpfg~~ 160 (700)
T PLN02339 81 ILCDIGMPVIHGGVRYNCRVFCLNRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPFGDG 160 (700)
T ss_pred eEEEEeeeEEECCeEEEEEEEEeCCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCceeccCcc
Confidence 99999999888889999999999999999999999999999999999999985433345666666667777778999988
Q ss_pred eEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCCcee
Q 011602 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (481)
Q Consensus 161 vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (481)
+|+++++|||+.||||+|||+.++..++++|||||+||+++|+..||...|++++..+++..+++|||||++|.++++.+
T Consensus 161 ~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~~yvyaN~~Ge~~~~lv 240 (700)
T PLN02339 161 YLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVYLYANQRGCDGGRLY 240 (700)
T ss_pred eeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCCcEEEEcCCccCCCceE
Confidence 99999999999999999999866656999999999999999999999889999999999998888899999997767799
Q ss_pred eeccEEEEeCCcEEEeecCCCCCceeEEEEEeecchhhhhhcccCchhhhccccCCCceeeeeccccCCCccccCCCCCc
Q 011602 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL 320 (481)
Q Consensus 241 f~G~S~I~p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (481)
|+|+|+|.|+|+++++++.|+++++++++++||+++++..|.+...+............+.++++++........+.+++
T Consensus 241 f~G~S~I~~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (700)
T PLN02339 241 YDGCACIVVNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQASSKKRVPSVAVPFKLCPPFSLSLVPSSPL 320 (700)
T ss_pred EcCceEEeCCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhhhhhcccccceeEEeeccCCccccccCCCCcc
Confidence 99999999999999999998754457999999999998888776665433221112233444454432111100134566
Q ss_pred cCCCCCChHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCC
Q 011602 321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGE 400 (481)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~ 400 (481)
+..++.|.|||++++++||||||+++|++|++||||||+|||++|+||+.||++++++++.|.++|.++++++.+....+
T Consensus 321 ~~~~~~p~~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~ 400 (700)
T PLN02339 321 KIRYHSPEEEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGE 400 (700)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccc
Confidence 67788899999999999999999999999999999999999999999999999999999878999999999999887778
Q ss_pred CCCChHhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHhhCCCCceeecCCcee
Q 011602 401 FPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVAPTLMK 476 (481)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (481)
.|.++.+||+++++||+||+.+||+.|+++|++||+.||++|++|||+++++++.++++..+|..|.|+++||+..
T Consensus 401 ~~~~~~~~~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~~~~~~~~~~~~~~g~~~~f~~~~~~~~ 476 (700)
T PLN02339 401 VPTDSKEFAKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDGVVSAVLSLFQTLTGKRPRYKVDGGSNA 476 (700)
T ss_pred cccchhhhhcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHHHHHHHHHHhhhhcCCCccccccCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999854
No 2
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.8e-86 Score=659.12 Aligned_cols=477 Identities=56% Similarity=0.961 Sum_probs=448.4
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCC
Q 011602 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (481)
Q Consensus 1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (481)
|+.++||.+++|.+..|+++|.++|++.|++|++.||.+-+-||+-+|||.|.|+|.+.+..-++++.|.+|...-...+
T Consensus 2 ~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DHf~E~Dt~~HswE~l~~l~~~~~~~~ 81 (706)
T KOG2303|consen 2 GRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDHFLESDTLLHSWEMLAELVESPVTQD 81 (706)
T ss_pred CceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHhhccchHHHHHHHHHHHHHcCCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999988899999999998766789
Q ss_pred eEEEEcceeeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccce
Q 011602 81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (481)
Q Consensus 81 i~iivG~~~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~ 160 (481)
+.+.+|+|..+.+..|||.+++-||+|+..++|+.|.+.|.|+|.|||+||.....++.|.||..++...+|.+||||+.
T Consensus 82 il~diGmPv~hr~~ryNCrv~~~n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y~lP~~i~~~~~Q~tVPfGda 161 (706)
T KOG2303|consen 82 ILCDIGMPVMHRNVRYNCRVLFLNRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEYQLPRMIQKHTGQETVPFGDA 161 (706)
T ss_pred eeEecCCchhhhhhhhccceeecCCeEEEEcccceeccCCCchhhccccccccccccceeeccHHHHHHhCCeeecccce
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred eEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCCcee
Q 011602 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (481)
Q Consensus 161 vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (481)
++.+.+.-||..||+++|.|..+...+++.|+|+++|.|.|++..+|.+.|..++...+.++|..|+|+|+-|++|+.+.
T Consensus 162 vl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh~LrK~~~r~~li~~at~k~GGvYlyaNqrGCDG~RlY 241 (706)
T KOG2303|consen 162 VLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHHELRKLNTRVDLILNATSKCGGVYLYANQRGCDGDRLY 241 (706)
T ss_pred eeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHHHHhhhhhhhHHHhcchhhcceEEEeeccCCCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred eeccEEEEeCCcEEEeecCCCCCceeEEEEEeecchhhhhhcccCchhhhccccCCCceeeeeccccCCCccccCCCCCc
Q 011602 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL 320 (481)
Q Consensus 241 f~G~S~I~p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (481)
|+|+|+|+-||+++||+.+|.-+|.+|++|+|||+.++.+|...++.+..+.++..++.|.++++++........+..|+
T Consensus 242 ydGca~Ia~NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~~~S~~~~as~~~~~~ri~v~~~ls~~~d~~~~~t~p~ 321 (706)
T KOG2303|consen 242 YDGCAMIAMNGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRASISSRGLQASRAVKYPRIHVDFELSQHFDLLATPTEPI 321 (706)
T ss_pred ecchhheeecceeeeecccccccceEEEEEEecHHHHHHHHhhhccccccccccCCcceeeecceeccccccccCCCCCc
Confidence 99999999999999999999988899999999999999999777666655554566888888888764322222456778
Q ss_pred cCCCCCChHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCC
Q 011602 321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGE 400 (481)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~ 400 (481)
....++|+|||..+++||||||||++|..||+|+||||+||+.+|+||+.||+++++|+.+|+++|+++.+++.++ .++
T Consensus 322 e~~~hsPeeEia~GPacwlWdyLRRs~~aGfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~-~~~ 400 (706)
T KOG2303|consen 322 EWKYHSPEEEIALGPACWLWDYLRRSGQAGFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVND-ISY 400 (706)
T ss_pred ccccCCcHHHhccCchHHHHHHHHhcCCCceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcC-CCc
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999999887 478
Q ss_pred CCCChHhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHhhCCCCceeecCCceeee
Q 011602 401 FPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYKVAPTLMKAC 478 (481)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (481)
.|.+|++||++++++|||.|.+||++|+++|++||+++|..|..++|+.+|.+++++|+-++|..|.|+++||++.+-
T Consensus 401 ~p~dp~~l~nri~~TcyMgSenSS~ETr~rak~La~~igs~H~~i~iD~~vsavl~lF~~vtGk~P~f~~~ggsn~en 478 (706)
T KOG2303|consen 401 TPTDPADLCNRILYTCYMGSENSSKETRRRAKELANQIGSYHIDLNIDTAVSAVLSLFNLVTGKTPRFKSHGGSNREN 478 (706)
T ss_pred CCCCHHHHHHhhhhhheeccccccHHHHHHHHHHHHhhcceeeeeeehHHHHHHHHHHHHHhCCCcceecCCCchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998653
No 3
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=2e-71 Score=608.27 Aligned_cols=413 Identities=25% Similarity=0.355 Sum_probs=341.9
Q ss_pred CceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCe
Q 011602 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGI 81 (481)
Q Consensus 2 ~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i 81 (481)
++||||++|+++.++|+++|+++|.+++++|+++|||||||||+++|||++.|++.+..+.+.+.+.+++|++.++++++
T Consensus 11 ~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~~~~~~~~~l~~L~~~a~~~~i 90 (679)
T PRK02628 11 GFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDAVEDALATLVEASADLDP 90 (679)
T ss_pred CcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHHHHHhhHHHHHHHHHHHhhcCE
Confidence 46999999999999999999999999999999999999999999999999999888777777777788889988888999
Q ss_pred EEEEcceeeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccc-e
Q 011602 82 LCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY-G 160 (481)
Q Consensus 82 ~iivG~~~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~-~ 160 (481)
++++|+|++.++++||++++|++|++++.|+|+|||+|++|+|++||+||+.... . ...+ ++..+|||. .
T Consensus 91 ~ivvG~p~~~~~~lyNsa~vi~~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~~-~-------~~~~-~g~~vpfG~~~ 161 (679)
T PRK02628 91 LLVVGAPLRVRHRLYNCAVVIHRGRILGVVPKSYLPNYREFYEKRWFAPGDGARG-E-------TIRL-CGQEVPFGTDL 161 (679)
T ss_pred EEEEeeEEEECCEEEEEEEEEcCCEEEEEeccccCCCCCcccccccccCCCCCCC-c-------eEee-cCeeeccCCce
Confidence 9999999888899999999999999999999999999999999999999986310 0 0012 345899994 6
Q ss_pred eEee---CCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCc-cCCC
Q 011602 161 FIQF---LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQ-GCDG 236 (481)
Q Consensus 161 vf~~---~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~-G~~~ 236 (481)
+|++ +++|||+.||||+|||+.+.+.++++|||||++|++||+..++...|+.+++++|+++++++|++|+. |..+
T Consensus 162 vf~~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~n~~~G~~~ 241 (679)
T PRK02628 162 LFEAEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYAAAGVGEST 241 (679)
T ss_pred eEEecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCCcccCcHHHHHHHHHHHHHHhCcEEEEEecccccCC
Confidence 7876 68999999999999998777899999999999999999999987777788899999999999999874 5444
Q ss_pred CceeeeccEEEEeCCcEEEeecCCCCCceeEEEEEeecchhhhhhcccCchhhhccc---cCCCceeeeeccccCCCccc
Q 011602 237 GRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASC---KTKIPSVAVPYNLCQPFNLK 313 (481)
Q Consensus 237 ~~~~f~G~S~I~p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 313 (481)
++.+|+|+|+|+++|+++++++.|+++ ++++++++|++.++..|.+...+...... ...+..+ +++++.+..++
T Consensus 242 ~~~vf~G~S~I~~~G~vla~a~~f~~~-e~l~~adiDl~~v~~~R~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~ 318 (679)
T PRK02628 242 TDLAWDGQTLIYENGELLAESERFPRE-EQLIVADVDLERLRQERLRNGSFDDNARHRDESAPFRTI--PFALDPPAGDL 318 (679)
T ss_pred CCeEEeCeEEEEcCCeEEEecCCCCCC-CcEEEEEEcHHHHHHHHhhcCCcccchhcccccCCceEE--EeeccCCcccc
Confidence 678999999999999999999988764 57999999999998888765444322100 0112223 33332211111
Q ss_pred cCCCCCccCCCCCCh---------HHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHH---hc
Q 011602 314 MSLSSPLKINYHSPE---------EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEI---SN 381 (481)
Q Consensus 314 ~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~---~~ 381 (481)
.+.+++++.||.|. +++++++++||+||++++|.++++||||||+||+++|+++ ++++ +.
T Consensus 319 -~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~-------~~a~~~lg~ 390 (679)
T PRK02628 319 -GLRRPVERFPFVPSDPARLDQRCYEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVA-------AKAMDRLGL 390 (679)
T ss_pred -cccCcCCCCCCCCcChhhhhhhHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHHHHhhCC
Confidence 12345555566554 7899999999999999999999999999999999988888 4553 21
Q ss_pred CchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHh
Q 011602 382 GDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTL 461 (481)
Q Consensus 382 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~ 461 (481)
+.++ +++++||+.++++.|.++|+++|+.||++|++++|+++++++...+...
T Consensus 391 ~~~~---------------------------v~~v~mp~~~ss~~s~~~a~~la~~LGi~~~~i~I~~~~~~~~~~l~~~ 443 (679)
T PRK02628 391 PRKN---------------------------ILAYTMPGFATTDRTKNNAVALMKALGVTAREIDIRPAALQMLKDIGHP 443 (679)
T ss_pred Ccce---------------------------EEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEEcHHHHHHHHHHhccc
Confidence 1122 7999999999999999999999999999999999999999998777643
No 4
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=4.4e-65 Score=548.07 Aligned_cols=357 Identities=29% Similarity=0.375 Sum_probs=317.2
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEE
Q 011602 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILC 83 (481)
Q Consensus 4 ~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~i 83 (481)
||||++|+++.++|++.|+++|.+++++|+++|||||||||+++|||.+.|++..+.+.+.+.+.+++|++.++ +++++
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~La~~~~-~~i~i 79 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFLAACEAALERLAAATA-GGPAV 79 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHHHHHHHHHHHHHHHHhcC-CCCEE
Confidence 79999999999999999999999999999999999999999999999998887777777777788999999876 79999
Q ss_pred EEcceeeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccceeEe
Q 011602 84 SFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQ 163 (481)
Q Consensus 84 ivG~~~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~vf~ 163 (481)
++|++++.++++||++++|++|++++.|+|+|||++++|+|.+||++|+.. .+|+
T Consensus 80 i~G~~~~~~~~~yNsa~vi~~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~~-------------------------~~~~ 134 (540)
T PRK13981 80 LVGHPWREGGKLYNAAALLDGGEVLATYRKQDLPNYGVFDEKRYFAPGPEP-------------------------GVVE 134 (540)
T ss_pred EEeCcEeeCCcEEEEEEEEECCeEEEEEeeeeCCCCCCcCccccccCCCCc-------------------------eEEE
Confidence 999998888999999999999999999999999999999999999999754 4789
Q ss_pred eCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeec
Q 011602 164 FLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDG 243 (481)
Q Consensus 164 ~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G 243 (481)
++++|||++||||+|||+ +.+.++.+|||+|++|++||+..++..+|..+++.||.||++++++||++|.+ ++.+|.|
T Consensus 135 ~~g~rigv~IC~D~~~pe-~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~vG~~-~~~~f~G 212 (540)
T PRK13981 135 LKGVRIGVPICEDIWNPE-PAETLAEAGAELLLVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQVGGQ-DELVFDG 212 (540)
T ss_pred ECCEEEEEEEehhhcCCc-HHHHHHHCCCcEEEEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEecccCC-CceEEeC
Confidence 999999999999999996 78899999999999999999988877778889999999999999999999987 7789999
Q ss_pred cEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcccCchhhhccccCCCceeeeeccccCCCccccCCCCCccC
Q 011602 244 CSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPLKI 322 (481)
Q Consensus 244 ~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (481)
+|+|+ |+|+++++++.|++ +++++++|++.. +++.. +... .|
T Consensus 213 ~S~i~dp~G~il~~~~~~~e---~~l~~did~~~~--------~~~~~------------~~~~-----------~~--- 255 (540)
T PRK13981 213 ASFVLNADGELAARLPAFEE---QIAVVDFDRGED--------GWRPL------------PGPI-----------AP--- 255 (540)
T ss_pred ceEEECCCCCEeeecCCCCC---cEEEEEEeecCC--------CcccC------------CCCC-----------CC---
Confidence 99999 99999999998864 688999998531 11100 0000 00
Q ss_pred CCCCChHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCC
Q 011602 323 NYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFP 402 (481)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~ 402 (481)
+....++++++++.||+||++++|+++++||||||+|||++|+|+ .++++ .++
T Consensus 256 -~~~~~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la-------~~a~g--~~~----------------- 308 (540)
T PRK13981 256 -PPEGEAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIA-------VDALG--AER----------------- 308 (540)
T ss_pred -CCChHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHHhC--cCc-----------------
Confidence 123457899999999999999999999999999999999999998 78875 344
Q ss_pred CChHhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHhh
Q 011602 403 TDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT 462 (481)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~ 462 (481)
+++++||+.++++.+.++|+++|+.||++|+++||+++++++...+...+
T Consensus 309 ----------v~~~~~p~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~~~ 358 (540)
T PRK13981 309 ----------VRAVMMPSRYTSEESLDDAAALAKNLGVRYDIIPIEPAFEAFEAALAPLF 358 (540)
T ss_pred ----------EEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHhhhhh
Confidence 69999999999999999999999999999999999999999998887654
No 5
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=1.2e-48 Score=383.71 Aligned_cols=249 Identities=35% Similarity=0.507 Sum_probs=225.0
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 5 rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
|||++|+++..+|+++|++++.+++++|+++|+|||||||+++|||.+.+.+....+.+...+.+++|++.+++++++++
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~la~~~~~~~i~ii 80 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEAAEEALEELAAATADLDIAVV 80 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHHHHHHHHHHHHhcccCCcEEE
Confidence 69999999999999999999999999999999999999999999999877665555556667789999999888899999
Q ss_pred EcceeeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccceeEee
Q 011602 85 FGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQF 164 (481)
Q Consensus 85 vG~~~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~vf~~ 164 (481)
+|++++.++++||++++|.+|++++.|+|.||+++++|.|.+||.+|+.. .+|++
T Consensus 81 ~G~~~~~~~~~yNs~~~i~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~-------------------------~~~~~ 135 (261)
T cd07570 81 VGLPLRHDGKLYNAAAVLQNGKILGVVPKQLLPNYGVFDEKRYFTPGDKP-------------------------DVLFF 135 (261)
T ss_pred EeceEecCCCEEEEEEEEeCCEEEEEEECccCcCCccccccccCccCCCC-------------------------CeEEE
Confidence 99999888899999999999999999999999999999999999999864 47899
Q ss_pred CCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeecc
Q 011602 165 LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGC 244 (481)
Q Consensus 165 ~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~ 244 (481)
+++|||++||||+|||+.+.|.++++|||+|++|+++|+..++..+|..++++||.||+++++++|++|.+ ++..|.|+
T Consensus 136 ~~~~ig~~IC~D~~fpe~~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~-~~~~~~G~ 214 (261)
T cd07570 136 KGLRIGVEICEDLWVPDPPSAELALAGADLILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQVGGQ-DDLVFDGG 214 (261)
T ss_pred CCEEEEEEeecccCCCCchHHHHHHcCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeCCCCC-ceEEEECc
Confidence 99999999999999998648899999999999999999877776677788999999999999999999987 67889999
Q ss_pred EEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 245 SCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 245 S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
|+|+ |+|+++++++.+ +.+++++|++.++..|.+.
T Consensus 215 S~ii~p~G~vl~~~~~~-----~~~~~~id~~~~~~~r~~~ 250 (261)
T cd07570 215 SFIADNDGELLAEAPRF-----EEDLADVDLDRLRSERRRN 250 (261)
T ss_pred eEEEcCCCCEEEecCcc-----eEEEEEEEEecCccccccc
Confidence 9999 999999998864 4578999999998877653
No 6
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=1.1e-45 Score=366.08 Aligned_cols=249 Identities=21% Similarity=0.253 Sum_probs=207.3
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccc---c-hhhh--hHHHHHHHHHHhccc
Q 011602 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL---E-LDTV--THAWECLKDLLLGDW 77 (481)
Q Consensus 4 ~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~---~-~~~~--~~~~~~l~~la~~~~ 77 (481)
||||++|+++. +|+++|++++.+++++|+++|||||||||++++||.+.+... . .... ....+.+.++++
T Consensus 1 ~~ia~~Q~~~~-~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~--- 76 (279)
T TIGR03381 1 VTVAALQMACS-DDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAK--- 76 (279)
T ss_pred CEEEEEEeecc-CCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHH---
Confidence 68999999986 999999999999999999999999999999999998754311 0 0000 123344555555
Q ss_pred CCCeEEEEcceeeeCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceec
Q 011602 78 TDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVP 156 (481)
Q Consensus 78 ~~~i~iivG~~~~~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vp 156 (481)
++++++++|++++.++++||++++|+ +|++++.|+|+|||....+.|++||++|+...
T Consensus 77 ~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~--------------------- 135 (279)
T TIGR03381 77 ELGVVIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGF--------------------- 135 (279)
T ss_pred HcCcEEEEeeeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCC---------------------
Confidence 57999999999888889999999998 89999999999998765678999999997421
Q ss_pred ccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccC-----CchHHHHHHHHHHHHHcCcEEEEEcC
Q 011602 157 FGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQL-----RKLDYRIRAFISATHSRGGVYMYSNH 231 (481)
Q Consensus 157 fg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~-----gk~~~~~~l~~~rA~e~~~~vv~aN~ 231 (481)
.+|+++++|+|++||||+|||+ ..|.++++|||+|++|++|++.. .....|..++++||.+|++++++||+
T Consensus 136 ---~~f~~~~~~ig~~IC~D~~fpe-~~r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~ 211 (279)
T TIGR03381 136 ---KVWDTRYGRIGVGICWDQWFPE-TARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANR 211 (279)
T ss_pred ---ceEecCCceEEEEEEcCCcChH-HHHHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEec
Confidence 5789999999999999999996 57899999999999999976431 22345666788999999999999999
Q ss_pred ccCC---CCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 232 QGCD---GGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 232 ~G~~---~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
+|.+ +++..|.|.|+|+ |+|+++++++.+++ +++++++|++.++..|...
T Consensus 212 ~G~~~~~~~~~~~~G~S~i~~p~G~il~~~~~~~e---~~~~~~id~~~~~~~r~~~ 265 (279)
T TIGR03381 212 IGTEVGDGGEQTFYGSSFIADHTGELVAEAGRSEE---AVLVATFDLDEIAKQRAAW 265 (279)
T ss_pred ccccCCCCCcceEeeeEEEECCCCcEeecCCCCCC---ceEEEEeCHHHHHHHHhcC
Confidence 9977 2467899999999 99999999987753 7899999999999888653
No 7
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=3.4e-45 Score=358.43 Aligned_cols=241 Identities=15% Similarity=0.137 Sum_probs=198.4
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhh-hhHHHHHHHHHHhcccCC
Q 011602 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDT-VTHAWECLKDLLLGDWTD 79 (481)
Q Consensus 1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~-~~~~~~~l~~la~~~~~~ 79 (481)
|++||||++|+++..+|++.|++++.+++++| +|||||||||++++||...+... .+ .+...+.|+++|++ +
T Consensus 1 m~~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~~~--~~~~~~~~~~l~~~A~~---~ 73 (256)
T PRK10438 1 MSGLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAAAS--SLPQDDVVAWMTAKAQQ---T 73 (256)
T ss_pred CCCCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccchhh--ccccchHHHHHHHHHHH---c
Confidence 88899999999998999999999999999875 69999999999999998755321 11 12344566777765 6
Q ss_pred CeEEEEcce-eeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceeccc
Q 011602 80 GILCSFGMP-VIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFG 158 (481)
Q Consensus 80 ~i~iivG~~-~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg 158 (481)
++ +++|.. +..++++||++++|++++.++.|+|+||+.. +.|..||+||+..
T Consensus 74 ~~-~i~g~~~~~~~~~~~Nsa~vi~~~G~~~~y~K~hL~~~--~~E~~~f~~G~~~------------------------ 126 (256)
T PRK10438 74 NA-LIAGSVALQTESGAVNRFLLVEPGGTVHFYDKRHLFRM--ADEHLHYKAGNAR------------------------ 126 (256)
T ss_pred Ce-EEEEEEEEecCCCeEEEEEEEcCCCCEEEEeeeecCCC--CCccceecCCCCc------------------------
Confidence 76 456765 4556789999999994334789999999753 4789999999854
Q ss_pred ceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCCc
Q 011602 159 YGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGR 238 (481)
Q Consensus 159 ~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~ 238 (481)
.+|+++++|||++||||+|||| ..|.+ +|||+|++|++||.... .+|..++++||.||++|+++||++|.+++.
T Consensus 127 -~v~~~~~~~iG~~ICyD~~fPe-~~r~l--~gad~i~~~s~~~~~~~--~~~~~~~~aRA~En~~~vv~~n~~G~~~~~ 200 (256)
T PRK10438 127 -VIVEWRGWRILPLVCYDLRFPV-WSRNR--NDYDLALYVANWPAPRS--LHWQTLLTARAIENQAYVAGCNRVGSDGNG 200 (256)
T ss_pred -eEEEECCEEEEEEEEeecCCHH-HHHhh--cCCCEEEEecCCCCCch--HHHHHHHHHHHHhcCcEEEEecccccCCCC
Confidence 5899999999999999999996 45554 89999999999986432 456677899999999999999999987545
Q ss_pred eeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 239 LYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 239 ~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
..|.|+|+|+ |+|+++++++.++ ++++++++|++.+++.|...
T Consensus 201 ~~~~G~S~ivdP~G~vl~~~~~~~---e~~i~~~idl~~~~~~R~~~ 244 (256)
T PRK10438 201 HHYRGDSRIINPQGEIIATAEPHQ---ATRIDAELSLEALQEYREKF 244 (256)
T ss_pred CEEcCceEEECCCCcEEEEcCCCC---cEEEEEEECHHHHHHHHHhC
Confidence 7899999999 9999999988764 37999999999999888753
No 8
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=3.3e-45 Score=373.87 Aligned_cols=250 Identities=16% Similarity=0.115 Sum_probs=204.8
Q ss_pred CceEEEEEeccCCC-------CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccc--cchhhh-----hHHHH
Q 011602 2 RLLKVATCNLNNWA-------LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHF--LELDTV-----THAWE 67 (481)
Q Consensus 2 ~~~rIAl~Q~~~~~-------~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~--~~~~~~-----~~~~~ 67 (481)
+.||||++|+++.. +|+++|++++.++|++|+++|||||||||++++||...... ....+. ....+
T Consensus 62 ~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~ 141 (363)
T cd07587 62 RIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTK 141 (363)
T ss_pred ceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHH
Confidence 36999999998543 59999999999999999999999999999999998642110 011111 12233
Q ss_pred HHHHHHhcccCCCeEEEEcceeee---CCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccc
Q 011602 68 CLKDLLLGDWTDGILCSFGMPVIK---GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLP 143 (481)
Q Consensus 68 ~l~~la~~~~~~~i~iivG~~~~~---~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p 143 (481)
.|+++|+ +++++|+.|+.++. ++++||++++|+ +|+++++|||+|||.++.|.|+.||.+|+...
T Consensus 142 ~l~~lAk---~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~-------- 210 (363)
T cd07587 142 FCQELAK---KYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGH-------- 210 (363)
T ss_pred HHHHHHH---HcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCC--------
Confidence 4555555 58999998988775 368999999999 89999999999999887789999999997421
Q ss_pred hhhHhhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcC
Q 011602 144 NEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRG 223 (481)
Q Consensus 144 ~~~~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~ 223 (481)
.+|+++++|||++||||+|||+ .+|.++++|||||++|++|+...++ .+|..++++||.+|+
T Consensus 211 ----------------~vf~t~~griG~~ICyD~~fPe-~~r~la~~GAdiil~Psa~~~~~~~-~~w~~~~rarAieN~ 272 (363)
T cd07587 211 ----------------PVFETQFGKIAVNICYGRHHPL-NWLMYGLNGAEIVFNPSATVGALSE-PMWPIEARNAAIANS 272 (363)
T ss_pred ----------------ceEEcCCceEEEEEecccCCcH-HHHHHHHcCCcEEEECCCcCCCCch-HHHHHHHHHHHHhcC
Confidence 5899999999999999999996 6789999999999999999865443 356678899999999
Q ss_pred cEEEEEcCccCCC---------------CceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcc
Q 011602 224 GVYMYSNHQGCDG---------------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (481)
Q Consensus 224 ~~vv~aN~~G~~~---------------~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~ 283 (481)
+|++++|++|.+. +...|.|+|+|+ |+|+++++++.++ +++++++||++.+++.|.+
T Consensus 273 ~fVv~~NrvG~e~~~~~~~~~~g~~~~~~~~~f~G~S~Ii~P~G~il~~~~~~~---E~ll~adiDl~~i~~~R~~ 345 (363)
T cd07587 273 YFTVGINRVGTEVFPNEFTSGDGKPAHKDFGHFYGSSYVAAPDGSRTPGLSRTR---DGLLVAELDLNLCRQVKDK 345 (363)
T ss_pred cEEEEeccccccccccccccccccccccccccccceeEEECCCCCCccCCCCCC---CcEEEEEecHHHHHHHHhc
Confidence 9999999999652 114689999999 9999998876554 3799999999999888764
No 9
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7.6e-45 Score=358.35 Aligned_cols=247 Identities=24% Similarity=0.314 Sum_probs=212.4
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 5 rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
|||++|+++..+|++.|++++.+++++|+++|+|||||||+++|||.+.+.+.+.. .....+.++.|++.+ .++.++
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~a--~~~~ii 77 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDLVYEVA-MHADDPRLQALAEAS--GGICVV 77 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhhhhhhh-cccchHHHHHHHHHc--CCCEEE
Confidence 69999999999999999999999999999999999999999999999876533211 112235677788775 278999
Q ss_pred Ecceeee-CCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccceeEe
Q 011602 85 FGMPVIK-GSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQ 163 (481)
Q Consensus 85 vG~~~~~-~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~vf~ 163 (481)
+|++++. ++++||++++|.+|++++.|+|+|||+++.|.|..||++|+.. .+|+
T Consensus 78 ~G~~~~~~~~~~yNt~~vi~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~~-------------------------~vf~ 132 (269)
T cd07586 78 FGFVEEGRDGRFYNSAAYLEDGRVVHVHRKVYLPTYGLFEEGRYFAPGSHL-------------------------RAFD 132 (269)
T ss_pred EeCeEEcCCCcEEEEEEEecCCEEEEEEEeEeCCCCCccceeeeecCCCcc-------------------------eEEE
Confidence 9999876 4899999999999999999999999988778899999999754 5899
Q ss_pred eCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCC-----chHHHHHHHHHHHHHcCcEEEEEcCccCCCCc
Q 011602 164 FLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLR-----KLDYRIRAFISATHSRGGVYMYSNHQGCDGGR 238 (481)
Q Consensus 164 ~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~g-----k~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~ 238 (481)
++++|||++||||+|||+ ..+.++.+|||+|++|+++++... ...+|..+.+.||.++++++|+||++|.+ +.
T Consensus 133 ~~~~~ig~~IC~D~~fp~-~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~-~~ 210 (269)
T cd07586 133 TRFGRAGVLICEDAWHPS-LPYLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGVE-DG 210 (269)
T ss_pred eCCeEEEEEEEeccCCcH-HHHHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecCc-CC
Confidence 999999999999999996 567899999999999999987432 23456778899999999999999999988 66
Q ss_pred eeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 239 LYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 239 ~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
..|.|+|+|+ |+|+++++.+.+++ ++++++||++.++..|...
T Consensus 211 ~~~~G~S~ii~p~G~il~~~~~~~~---~~~~~~id~~~~~~~r~~~ 254 (269)
T cd07586 211 VYFWGGSRVVDPDGEVVAEAPLFEE---DLLVAELDRSAIRRARFFS 254 (269)
T ss_pred ceEeCCcEEECCCCCEEEecCCccc---cEEEEEecHHHHHHHHhhC
Confidence 7889999999 99999999987753 6899999999998887754
No 10
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=4.6e-45 Score=356.70 Aligned_cols=241 Identities=23% Similarity=0.260 Sum_probs=207.4
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccch--hhhhHHHHHHHHHHhcccCCCeE
Q 011602 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL--DTVTHAWECLKDLLLGDWTDGIL 82 (481)
Q Consensus 5 rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~--~~~~~~~~~l~~la~~~~~~~i~ 82 (481)
|||++|+++..+|++.|++++.+++++|+++|+|||||||+++|||.+.+.+... .......+.+.+++ ++++++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a---~~~~~~ 77 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVARLAEPADGPALQALRAIA---RRHGIA 77 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhhhhhcccCChHHHHHHHHH---HHcCCE
Confidence 7999999998999999999999999999999999999999999999886544322 11222334444554 458999
Q ss_pred EEEcceeeeCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceeccccee
Q 011602 83 CSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGF 161 (481)
Q Consensus 83 iivG~~~~~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~v 161 (481)
+++|+++..++++||++++|+ +|++++.|+|.||++ +.|.+||++|+.. .+
T Consensus 78 ii~G~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~---~~E~~~~~~G~~~-------------------------~v 129 (254)
T cd07576 78 IVVGYPERAGGAVYNAAVLIDEDGTVLANYRKTHLFG---DSERAAFTPGDRF-------------------------PV 129 (254)
T ss_pred EEEeccccCCCceEEEEEEECCCCCEeeEEEeeccCC---cchhhhccCCCCc-------------------------eE
Confidence 999999888899999999998 799999999999986 3688999999754 58
Q ss_pred EeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCCceee
Q 011602 162 IQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYF 241 (481)
Q Consensus 162 f~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f 241 (481)
|+++++|||++||||+|||+ ..+.++++|||+|++|++++...+ .+|..+++.||.+|++++++||++|.+ ++..|
T Consensus 130 ~~~~~~kig~~IC~D~~fpe-~~~~~~~~gadii~~p~~~~~~~~--~~~~~~~~~rA~en~~~vv~an~~G~~-~~~~~ 205 (254)
T cd07576 130 VELRGLRVGLLICYDVEFPE-LVRALALAGADLVLVPTALMEPYG--FVARTLVPARAFENQIFVAYANRCGAE-DGLTY 205 (254)
T ss_pred EEECCeEEEEEEeecCCCCH-HHHHHHHCCCCEEEECCccCCCcc--hhhhhhhHHHHHhCCCEEEEEcccCCC-CCcee
Confidence 99999999999999999996 678999999999999999876555 456678899999999999999999987 66789
Q ss_pred eccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 242 DGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 242 ~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
.|+|+|+ |+|+++++++.+ + +++++++|++.++..|.+.
T Consensus 206 ~G~S~i~~p~G~il~~~~~~-e---~~~~~~id~~~~~~~R~~~ 245 (254)
T cd07576 206 VGLSSIAGPDGTVLARAGRG-E---ALLVADLDPAALAAARREN 245 (254)
T ss_pred eeeeEEECCCCCEeEecCCC-C---eEEEEEcCHHHHHhhhhcC
Confidence 9999999 999999998875 3 6999999999999888753
No 11
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=2.3e-44 Score=358.39 Aligned_cols=251 Identities=20% Similarity=0.172 Sum_probs=207.0
Q ss_pred CceEEEEEeccCC-------CCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHH-----HHHH
Q 011602 2 RLLKVATCNLNNW-------ALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHA-----WECL 69 (481)
Q Consensus 2 ~~~rIAl~Q~~~~-------~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~-----~~~l 69 (481)
|+||||++|+++. .++.+.|++++.+++++|+++|||||||||++++||.+.+.. ..+.+.+ .+.+
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~--~~~~~~~~~~~~~~~~ 79 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQD--TKWYEFAEEIPNGPTT 79 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccc--cchhhhcccCCCChHH
Confidence 6799999999976 489999999999999999999999999999999999754321 1111111 0123
Q ss_pred HHHHhcccCCCeEEEEcceeee-CCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhH
Q 011602 70 KDLLLGDWTDGILCSFGMPVIK-GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEIS 147 (481)
Q Consensus 70 ~~la~~~~~~~i~iivG~~~~~-~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~ 147 (481)
+.|++.++++++++++|+.++. ++++||++++|+ +|++++.|+|+|||++++|.|.+||.+|+...
T Consensus 80 ~~l~~~a~~~~i~ii~g~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~~------------ 147 (287)
T cd07568 80 KRFAALAKEYNMVLILPIYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGY------------ 147 (287)
T ss_pred HHHHHHHHHCCEEEEEEeEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCCC------------
Confidence 4444444568999999987764 578999999999 89999999999999998899999999997421
Q ss_pred hhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEE
Q 011602 148 VALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYM 227 (481)
Q Consensus 148 ~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv 227 (481)
.+|+++++|||++||||.|||+ ..|.++.+|||+|++|++++....+ ..|..+.++||.+|+++++
T Consensus 148 ------------~~f~~~~~~iG~~ICyD~~fpe-~~r~la~~Ga~li~~ps~~~~~~~~-~~~~~~~~~rA~en~~~vv 213 (287)
T cd07568 148 ------------PVFDTAFGKIGVYICYDRHFPE-GWRALGLNGAEIVFNPSATVAGLSE-YLWKLEQPAAAVANGYFVG 213 (287)
T ss_pred ------------ceEEcCCceEEEEEEecccCch-HHHHHHHCCCeEEEECCcCCCCCch-hhhHHHHHHHHHHCCcEEE
Confidence 5789999999999999999996 6789999999999999999864432 2444567899999999999
Q ss_pred EEcCccCCCC--ceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcc
Q 011602 228 YSNHQGCDGG--RLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (481)
Q Consensus 228 ~aN~~G~~~~--~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~ 283 (481)
++|++|.+.. ...|.|+|+|+ |+|+++++++.+++ +++++++|++.++..|.+
T Consensus 214 ~~N~~G~~~~~~~~~~~G~S~ii~p~G~il~~~~~~~~---~~l~a~id~~~~~~~R~~ 269 (287)
T cd07568 214 AINRVGTEAPWNIGEFYGSSYFVDPRGQFVASASRDKD---ELLVAELDLDLIREVRDT 269 (287)
T ss_pred EeccccccCCCccceEeceeEEECCCceEEEecCCCCC---eEEEEEecHHHHHHHHhh
Confidence 9999997632 25789999999 99999999987753 799999999999888864
No 12
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=4.3e-44 Score=354.08 Aligned_cols=252 Identities=27% Similarity=0.307 Sum_probs=206.8
Q ss_pred ceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCc-cccchhhhhHHHHHHHHHHhcccCCCe
Q 011602 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED-HFLELDTVTHAWECLKDLLLGDWTDGI 81 (481)
Q Consensus 3 ~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d-~~~~~~~~~~~~~~l~~la~~~~~~~i 81 (481)
+||||++|+++..+|+++|++++.+++++|+++|||||||||+++|||.+.+ .+............++.+.+.++. +.
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~-~~ 80 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCEDDLFLEEAAAEAGEETLEFLAALAEE-GG 80 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCcccHHHHHhhhhccCChHHHHHHHHHHh-CC
Confidence 5999999999999999999999999999999999999999999999999985 443333222222334444444332 44
Q ss_pred EEEEcceeeeCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccce
Q 011602 82 LCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (481)
Q Consensus 82 ~iivG~~~~~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~ 160 (481)
.+++|.+.....+.||+++++. +|+++++|+|+|||++ .|+|+++|.||+... .
T Consensus 81 ~~ivg~~~~~~~~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~------------------------~ 135 (274)
T COG0388 81 VIIVGGPLPEREKLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGV------------------------V 135 (274)
T ss_pred eEEEEeeeeccccceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccc------------------------e
Confidence 5667766544436777777775 9999999999999987 677999999998651 3
Q ss_pred eEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCCcee
Q 011602 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (481)
Q Consensus 161 vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (481)
+|+++++|+|+.||||+||||...+.+++.|||+|++|++++...+ ..+|..++++||.+|+++++++|++|.+.....
T Consensus 136 v~~~~~~kig~~IC~D~~fPe~~~~~~a~~Gaeii~~p~a~~~~~~-~~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~ 214 (274)
T COG0388 136 VFETDGGKIGLLICYDLRFPELARRLLALGGAELLLVPAAWPAERG-LDHWEVLLRARAIENQVYVLAANRAGFDGAGLE 214 (274)
T ss_pred eEEeCCceEEEEEEeeccCHHHHHHHHHhcCCeEEEEcCCCCCccc-HHHHHHHHHHHhhhcCceEEEecccCCCCCccE
Confidence 7999999999999999999974444448899999999999998776 467888899999999999999999998833488
Q ss_pred eeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 241 f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
|.|+|+|+ |+|++++++..++ ++++++++|++.+...|...
T Consensus 215 ~~G~S~i~~p~G~v~~~~~~~~---e~~~~~~id~~~~~~~r~~~ 256 (274)
T COG0388 215 FCGHSAIIDPDGEVLAEAGEEE---EGVLLADIDLAELAEVRRKI 256 (274)
T ss_pred EecceEEECCCccEEeecCCCC---CcEEEEEECHHHHHHHHhhC
Confidence 99999999 9999999998763 47999999999999888754
No 13
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=1.9e-43 Score=364.62 Aligned_cols=251 Identities=16% Similarity=0.143 Sum_probs=205.7
Q ss_pred CceEEEEEeccCCC-------CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCc---cccc--hhhhhHHHHHH
Q 011602 2 RLLKVATCNLNNWA-------LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED---HFLE--LDTVTHAWECL 69 (481)
Q Consensus 2 ~~~rIAl~Q~~~~~-------~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d---~~~~--~~~~~~~~~~l 69 (481)
+.||||++|+++.. ++.+.|++++.+++++|+++|||||||||++++||.... .+.. ........+.+
T Consensus 85 ~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~g~~~~~l 164 (405)
T PLN00202 85 RVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFL 164 (405)
T ss_pred CeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCCCHHHHHH
Confidence 46999999999743 599999999999999999999999999999999996411 1110 01112233445
Q ss_pred HHHHhcccCCCeEEEEcceeee---CCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchh
Q 011602 70 KDLLLGDWTDGILCSFGMPVIK---GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNE 145 (481)
Q Consensus 70 ~~la~~~~~~~i~iivG~~~~~---~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~ 145 (481)
+++|+ +++++|++|+.++. ++++||++++|+ +|+++++|||+|||++++|.|+.||.+|+...
T Consensus 165 ~~lA~---~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g~---------- 231 (405)
T PLN00202 165 QELAR---KYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGH---------- 231 (405)
T ss_pred HHHHH---HCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCCc----------
Confidence 55555 58999999987753 357999999998 79999999999999998899999999997421
Q ss_pred hHhhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcE
Q 011602 146 ISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225 (481)
Q Consensus 146 ~~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~ 225 (481)
.+|+++++|||++||||+|||+ .+|.++++|||+|++|++|+...++ .+|..++++||.+|++|
T Consensus 232 --------------~vf~t~~gkiGv~ICYD~~FPE-~~r~la~~GAdiIl~Psa~~~~~~~-~~w~~~~raRAiEN~~f 295 (405)
T PLN00202 232 --------------PVFETAFGKIAVNICYGRHHPL-NWLAFGLNGAEIVFNPSATVGDLSE-PMWPIEARNAAIANSYF 295 (405)
T ss_pred --------------eEEEeCCCeEEEEEccccccHH-HHHHHHHCCCcEEEECCCCCCccCH-HHHHHHHHHHHHhcCCE
Confidence 5789999999999999999995 6789999999999999999865443 45667889999999999
Q ss_pred EEEEcCccCCC---------------CceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 226 YMYSNHQGCDG---------------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 226 vv~aN~~G~~~---------------~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
+++||++|.+. +...|.|+|+|+ |+|++++++..++ +++++++||++.+++.|.+.
T Consensus 296 vv~aNrvG~~~~~~~~~~~~g~~~~~~~~~f~G~S~Iv~P~G~vla~~~~~~---E~llvadIDl~~v~~~R~~~ 367 (405)
T PLN00202 296 VGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDASCTPSLSRYK---DGLLISDMDLNLCRQLKDKW 367 (405)
T ss_pred EEEeccccccccccccccccccccccccccccceeEEEcCCCCEeccCCCCC---CcEEEEEeCHHHHHHHHHhC
Confidence 99999999752 114689999999 9999999987554 37999999999999888764
No 14
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.2e-43 Score=347.89 Aligned_cols=244 Identities=24% Similarity=0.202 Sum_probs=204.0
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhh-----hHHHHHHHHHHhcccCC
Q 011602 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV-----THAWECLKDLLLGDWTD 79 (481)
Q Consensus 5 rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~-----~~~~~~l~~la~~~~~~ 79 (481)
|||++|+++..+|++.|++++.+++++|+++|+|||||||++++||...+......+. ....+.+.++++ ++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~---~~ 77 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRDEAFALAEEVPDGASTRAWAELAA---EL 77 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHHHHHHhhccCCCCchHHHHHHHHH---Hc
Confidence 6999999999999999999999999999999999999999999999876532111111 123344555555 57
Q ss_pred CeEEEEcceeeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccc
Q 011602 80 GILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY 159 (481)
Q Consensus 80 ~i~iivG~~~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~ 159 (481)
++++++|++++.++++||++++++++++++.|+|.||+. .|.+||++|+...
T Consensus 78 ~~~i~~G~~~~~~~~~yNs~~vi~~~g~~~~y~K~~l~~----~e~~~f~~G~~~~------------------------ 129 (268)
T cd07580 78 GLYIVAGFAERDGDRLYNSAVLVGPDGVIGTYRKAHLWN----EEKLLFEPGDLGL------------------------ 129 (268)
T ss_pred CcEEEeecccccCCceEEEEEEECCCCcEEEEEEecCCc----hhcceecCCCCCC------------------------
Confidence 999999999887889999999999655789999999985 5889999998621
Q ss_pred eeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCch----HHHHHHHHHHHHHcCcEEEEEcCccCC
Q 011602 160 GFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKL----DYRIRAFISATHSRGGVYMYSNHQGCD 235 (481)
Q Consensus 160 ~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~----~~~~~l~~~rA~e~~~~vv~aN~~G~~ 235 (481)
.+|+++++|+|++||||+|||+ ..|.++.+|||+|++|++|++..++. .+|..+.++||.||++++++||++|.+
T Consensus 130 ~v~~~~~~~ig~~IC~D~~fpe-~~r~~~~~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~ 208 (268)
T cd07580 130 PVFDTPFGRIGVAICYDGWFPE-TFRLLALQGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADRVGTE 208 (268)
T ss_pred ceEEcCCCcEEEEEECcccchH-HHHHHHHcCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEeeeeec
Confidence 5789999999999999999996 56789999999999999999865431 244556789999999999999999987
Q ss_pred CCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcc
Q 011602 236 GGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (481)
Q Consensus 236 ~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~ 283 (481)
++..|.|+|+|+ |+|+++++++.+.+ ++++++++|++.++..|..
T Consensus 209 -~~~~~~G~S~ii~p~G~~~~~~~~~~~--~~~~~~~id~~~~~~~r~~ 254 (268)
T cd07580 209 -RGQPFIGQSLIVGPDGWPLAGPASGDE--EEILLADIDLTAARRKRIW 254 (268)
T ss_pred -cCceEeeeeEEECCCCCeeeecCCCCC--CeEEEEEecHHHHHHhhcC
Confidence 557899999999 99999999876533 4799999999999988864
No 15
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.4e-43 Score=343.49 Aligned_cols=242 Identities=24% Similarity=0.279 Sum_probs=205.9
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc-hhhhhHHHHHHHHHHhcccCCCeEE
Q 011602 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE-LDTVTHAWECLKDLLLGDWTDGILC 83 (481)
Q Consensus 5 rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~-~~~~~~~~~~l~~la~~~~~~~i~i 83 (481)
|||++|+++..+|+++|++++.+++++|+++|+|||||||++++||.+.+.... ........+.+.++++ ++++++
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~~~i 77 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAK---KHGVNI 77 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHH---HcCcEE
Confidence 699999999999999999999999999999999999999999999987654322 1222334455556665 579999
Q ss_pred EEcce-eeeCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceeccccee
Q 011602 84 SFGMP-VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGF 161 (481)
Q Consensus 84 ivG~~-~~~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~v 161 (481)
++|+. +..++++||++++|+ +|++++.|+|+||+++ +.|.+||.+|+.. .+
T Consensus 78 v~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~~-------------------------~v 130 (253)
T cd07583 78 VAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDEL-------------------------EV 130 (253)
T ss_pred EeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCCc-------------------------eE
Confidence 99975 556789999999999 7999999999999876 4688999999754 57
Q ss_pred EeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCCceee
Q 011602 162 IQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYF 241 (481)
Q Consensus 162 f~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f 241 (481)
|+++++|||++||+|+|||+ ..|.++.+|||+|++|++|+.. ....|..+.+.||.+|+++++++|++|.+ ++..|
T Consensus 131 ~~~~~~rig~~IC~D~~~pe-~~r~~~~~ga~ll~~ps~~~~~--~~~~~~~~~~~rA~en~~~vv~~n~~G~~-~~~~~ 206 (253)
T cd07583 131 FELDGGKVGLFICYDLRFPE-LFRKLALEGAEILFVPAEWPAA--RIEHWRTLLRARAIENQAFVVACNRVGTD-GGNEF 206 (253)
T ss_pred EEeCCeEEEEEEEeccccHH-HHHHHHHcCCcEEEECCCCCCC--chHHHHHHHHHHHHHhCCEEEEEcCcccC-CCcee
Confidence 99999999999999999995 7889999999999999998753 23456667889999999999999999988 56789
Q ss_pred eccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 242 DGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 242 ~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
.|.|+|+ |+|+++++++. + ++++++++|++.++..|...
T Consensus 207 ~G~S~ii~p~G~il~~~~~-~---~~~~~~~i~l~~~~~~r~~~ 246 (253)
T cd07583 207 GGHSMVIDPWGEVLAEAGE-E---EEILTAEIDLEEVAEVRKKI 246 (253)
T ss_pred cceeEEECCCchhheecCC-C---ceEEEEEecHHHHHHHHHhC
Confidence 9999999 99999999876 2 47999999999998888653
No 16
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=3.8e-43 Score=352.16 Aligned_cols=252 Identities=19% Similarity=0.218 Sum_probs=201.3
Q ss_pred CceEEEEEeccCCCC--CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc----hhhhhHH--HHHHHHHH
Q 011602 2 RLLKVATCNLNNWAL--DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE----LDTVTHA--WECLKDLL 73 (481)
Q Consensus 2 ~~~rIAl~Q~~~~~~--d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~----~~~~~~~--~~~l~~la 73 (481)
++||||++|+++..+ +.+.|++++.+++++|+++|||||||||+++|||.+.+.... ..+.+.. ...++.|+
T Consensus 2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (302)
T cd07569 2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLF 81 (302)
T ss_pred ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHH
Confidence 579999999998866 899999999999999999999999999999999875332211 1111110 01234444
Q ss_pred hcccCCCeEEEEcceee-eCC---eeEEEEEEEe-CCeEEEEeeccccCCCCCcc--------cccceecCC-CCCcccc
Q 011602 74 LGDWTDGILCSFGMPVI-KGS---ERYNCQVLCL-NRKIIMIRPKLWLANDGNYR--------ELRWFTAWK-QKDQLED 139 (481)
Q Consensus 74 ~~~~~~~i~iivG~~~~-~~~---~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~--------E~~~f~~G~-~~~~~~~ 139 (481)
+.++++++++++|+++. .++ ++||++++|+ +|++++.|+|+|||++++|. |+.||.+|+ ..
T Consensus 82 ~~a~~~~i~iv~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~----- 156 (302)
T cd07569 82 DRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGF----- 156 (302)
T ss_pred HHHHHhCeEEEEeceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCC-----
Confidence 55556899999999875 344 8999999997 89999999999999887653 667777776 32
Q ss_pred cccchhhHhhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccC------Cc--hHHH
Q 011602 140 FQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQL------RK--LDYR 211 (481)
Q Consensus 140 ~~~p~~~~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~------gk--~~~~ 211 (481)
.+|+++++|||++||||+|||+ ..|.++.+|||+|++|+++++.. .+ ..+|
T Consensus 157 --------------------~v~~~~~~rig~~IC~D~~fpe-~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T cd07569 157 --------------------PVFRVPGGIMGMCICNDRRWPE-TWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHN 215 (302)
T ss_pred --------------------ceEecCCceEEEEEeeccccch-HHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHH
Confidence 5899999999999999999996 57899999999999987764321 11 1233
Q ss_pred HHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcc
Q 011602 212 IRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (481)
Q Consensus 212 ~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~ 283 (481)
....++||.||+++++++|++|.+ +...|.|+|.|+ |+|+++++++.+++ +++++++|++.++..|..
T Consensus 216 ~~~~~arA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~vla~~~~~~e---~~~~a~id~~~~~~~r~~ 284 (302)
T cd07569 216 LLSMQAGAYQNGTWVVAAAKAGME-DGCDLIGGSCIVAPTGEIVAQATTLED---EVIVADCDLDLCREGRET 284 (302)
T ss_pred HHHHhhhhhcccceEEEeeccccC-CCceEecceEEECCCCCEEEecCCCCC---cEEEEEecHHHhhhcccc
Confidence 445678999999999999999988 567899999999 99999999988753 789999999999887763
No 17
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=5.7e-43 Score=347.66 Aligned_cols=247 Identities=22% Similarity=0.248 Sum_probs=207.5
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccch------hhhhHHHHHHHHHHhccc
Q 011602 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLEL------DTVTHAWECLKDLLLGDW 77 (481)
Q Consensus 4 ~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~------~~~~~~~~~l~~la~~~~ 77 (481)
||||++|+++. +|++.|++++.+++++|+++|+|||||||++++||.+.+..... +..+...+.+.++++
T Consensus 1 ~~ia~~Q~~~~-~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~--- 76 (284)
T cd07573 1 VTVALVQMACS-EDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAK--- 76 (284)
T ss_pred CEEEEEEeecc-CCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHH---
Confidence 68999999986 99999999999999999999999999999999999876532110 111223344555555
Q ss_pred CCCeEEEEcceeee-CCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCC-CCCcccccccchhhHhhccCce
Q 011602 78 TDGILCSFGMPVIK-GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWK-QKDQLEDFQLPNEISVALKQKS 154 (481)
Q Consensus 78 ~~~i~iivG~~~~~-~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~-~~~~~~~~~~p~~~~~~~~~~~ 154 (481)
++++++++|++++. ++++||++++|+ +|++++.|+|.|||..+.+.|.+||.+|+ ..
T Consensus 77 ~~~i~iv~g~~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~-------------------- 136 (284)
T cd07573 77 ELGVVIPVSLFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTGF-------------------- 136 (284)
T ss_pred HCCEEEEecceeeCCCCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCCC--------------------
Confidence 58999999998764 468999999998 89999999999999766678999999997 33
Q ss_pred ecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccC-------CchHHHHHHHHHHHHHcCcEEE
Q 011602 155 VPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQL-------RKLDYRIRAFISATHSRGGVYM 227 (481)
Q Consensus 155 vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~-------gk~~~~~~l~~~rA~e~~~~vv 227 (481)
.+|+++++|+|++||||.|||+ ..|.++.+|||+|++|+++++.. .....|..+.+.||.+|+++++
T Consensus 137 -----~~~~~~~~~ig~~IC~D~~fpe-~~r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv 210 (284)
T cd07573 137 -----KVFDTRYGRIGVLICWDQWFPE-AARLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVA 210 (284)
T ss_pred -----ceEecCCceEEEEEeccccchH-HHHHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEE
Confidence 5789999999999999999996 68899999999999999987642 2334566778899999999999
Q ss_pred EEcCccCCC---CceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcc
Q 011602 228 YSNHQGCDG---GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (481)
Q Consensus 228 ~aN~~G~~~---~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~ 283 (481)
+||++|.++ .+..|.|+|+|+ |+|+++++++.+++ +++++++|++.++..|..
T Consensus 211 ~an~~G~~~~~~~~~~~~G~S~i~~p~G~i~~~~~~~~~---~v~~a~id~~~~~~~r~~ 267 (284)
T cd07573 211 AVNRVGVEGDPGSGITFYGSSFIADPFGEILAQASRDEE---EILVAEFDLDEIEEVRRA 267 (284)
T ss_pred EeccccccCCCCCCceeeceeEEECCCCCeeeccCCCCC---cEEEEEecHHHHHHHHhh
Confidence 999999873 268899999999 99999999988753 799999999999988864
No 18
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=4.2e-43 Score=344.96 Aligned_cols=245 Identities=20% Similarity=0.192 Sum_probs=206.9
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc---hhhhhHHHHHHHHHHhcccCCCe
Q 011602 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE---LDTVTHAWECLKDLLLGDWTDGI 81 (481)
Q Consensus 5 rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~---~~~~~~~~~~l~~la~~~~~~~i 81 (481)
|||++|+++. +|+++|++++.+++++|+++|+|||||||++++||.+.+.... ........+.+.++++ ++++
T Consensus 1 kia~~Q~~~~-~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~i 76 (265)
T cd07572 1 RVALIQMTST-ADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGDGPTLQALSELAK---EHGI 76 (265)
T ss_pred CEEEEEeeCC-CCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhhhhccccCChHHHHHHHHHH---HCCe
Confidence 6999999987 9999999999999999999999999999999999987654432 2223344455666665 4799
Q ss_pred EEEEc-ceeeeC--CeeEEEEEEEe-CCeEEEEeeccccCC-----CCCcccccceecCCCCCcccccccchhhHhhccC
Q 011602 82 LCSFG-MPVIKG--SERYNCQVLCL-NRKIIMIRPKLWLAN-----DGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQ 152 (481)
Q Consensus 82 ~iivG-~~~~~~--~~~yNsa~vi~-~G~il~~y~K~~Lp~-----~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~ 152 (481)
++++| ++++.+ +++||++++|+ +|+++++|+|+||++ ...|.|.+||++|+..
T Consensus 77 ~i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~~------------------ 138 (265)
T cd07572 77 WLVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDEV------------------ 138 (265)
T ss_pred EEEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCcc------------------
Confidence 99999 566655 89999999998 899999999999953 2236788999999754
Q ss_pred ceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCc
Q 011602 153 KSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQ 232 (481)
Q Consensus 153 ~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~ 232 (481)
.+|+++++|+|++||+|.|||+ ..+.++.+|||+|++|++++...++ .+|..+.+.||.+++++++++|++
T Consensus 139 -------~~~~~~~~~ig~~IC~D~~~pe-~~r~~~~~gadli~~p~~~~~~~~~-~~~~~~~~~rA~e~~~~vv~~n~~ 209 (265)
T cd07572 139 -------VVVDTPFGKIGLGICYDLRFPE-LARALARQGADILTVPAAFTMTTGP-AHWELLLRARAIENQCYVVAAAQA 209 (265)
T ss_pred -------eEEecCCceEEEEEEeccCcHH-HHHHHHHCCCCEEEECCCCCCCcch-HHHHHHHHHHHHhcCCEEEEEccc
Confidence 5789999999999999999995 6889999999999999999876554 356677899999999999999999
Q ss_pred cCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 233 GCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 233 G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
|.+.+...|.|.|+|+ |+|+++++++.+ + +++++++|++.+++.|.+.
T Consensus 210 G~~~~~~~~~G~S~i~~p~G~il~~~~~~-~---~~~~~~id~~~~~~~r~~~ 258 (265)
T cd07572 210 GDHEAGRETYGHSMIVDPWGEVLAEAGEG-E---GVVVAEIDLDRLEEVRRQI 258 (265)
T ss_pred ccCCCCCeecceeEEECCCcHHHhhcCCC-C---cEEEEEeCHHHHHHHHHhC
Confidence 9875667899999999 999999998876 3 6899999999998887653
No 19
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=4.3e-43 Score=350.80 Aligned_cols=252 Identities=19% Similarity=0.230 Sum_probs=205.6
Q ss_pred CceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcc----ccchhhhhHHHHHHHHHHhccc
Q 011602 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDH----FLELDTVTHAWECLKDLLLGDW 77 (481)
Q Consensus 2 ~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~----~~~~~~~~~~~~~l~~la~~~~ 77 (481)
++||||++|+++ .+|+++|++++.+++++|++.|||||||||++++||.+.+. +......+. .+.++.|.+.++
T Consensus 5 ~~~~va~~Q~~~-~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~ 82 (296)
T PLN02747 5 RKVVVAALQFAC-SDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEG-HPTIARMQKLAK 82 (296)
T ss_pred cceEEEEEEecC-CCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCC-ChHHHHHHHHHH
Confidence 469999999997 58999999999999999999999999999999999986421 111111110 123344444444
Q ss_pred CCCeEEEEcceeeeCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceec
Q 011602 78 TDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVP 156 (481)
Q Consensus 78 ~~~i~iivG~~~~~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vp 156 (481)
++++++++|++++.++++||++++|+ +|+++++|+|.|||....+.|+.||.+|+...
T Consensus 83 ~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~~--------------------- 141 (296)
T PLN02747 83 ELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGF--------------------- 141 (296)
T ss_pred HcCeEEEeeeeecCCCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCCC---------------------
Confidence 58999999998888899999999998 89999999999998765667889999987420
Q ss_pred ccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCccc-----CCchHHHHHHHHHHHHHcCcEEEEEcC
Q 011602 157 FGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQ-----LRKLDYRIRAFISATHSRGGVYMYSNH 231 (481)
Q Consensus 157 fg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~-----~gk~~~~~~l~~~rA~e~~~~vv~aN~ 231 (481)
.+|+++++|+|++||||.|||+ ..|.++.+|||+|++|++|+.. ..+...|..++++||.+|+++++++|+
T Consensus 142 ---~~~~~~~~rig~~IC~D~~fpe-~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~ 217 (296)
T PLN02747 142 ---KVFDTKFAKIGVAICWDQWFPE-AARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNR 217 (296)
T ss_pred ---eeEEcCCccEEEEEEccccchH-HHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4789999999999999999996 6789999999999999997532 123356677889999999999999999
Q ss_pred ccCC------C-CceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcc
Q 011602 232 QGCD------G-GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (481)
Q Consensus 232 ~G~~------~-~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~ 283 (481)
+|.+ + .+..|.|+|+|+ |+|+++++++.++ ++++++++|++.++..|..
T Consensus 218 ~G~~~~~~~~g~~~~~~~G~S~i~~p~G~vl~~~~~~~---e~~~~adid~~~~~~~r~~ 274 (296)
T PLN02747 218 IGTEILETEHGPSKITFYGGSFIAGPTGEIVAEADDKA---EAVLVAEFDLDQIKSKRAS 274 (296)
T ss_pred ccccccccccCCcCceEeeeeEEECCCCCEeecCCCCC---CcEEEEEEcHHHHHHHHHh
Confidence 9963 1 257899999999 9999999998764 3799999999999887754
No 20
>PLN02504 nitrilase
Probab=100.00 E-value=6.5e-43 Score=355.29 Aligned_cols=248 Identities=15% Similarity=0.124 Sum_probs=202.5
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccc----------chh---hhhHH--
Q 011602 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL----------ELD---TVTHA-- 65 (481)
Q Consensus 1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~----------~~~---~~~~~-- 65 (481)
|++||||++|+++..+|.++|+++++++|++|+++|||||||||+++|||+....+. ... +.+.+
T Consensus 22 ~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 101 (346)
T PLN02504 22 SSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAID 101 (346)
T ss_pred CCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhccc
Confidence 457999999999999999999999999999999999999999999999998643221 001 11111
Q ss_pred --HHHHHHHHhcccCCCeEEEEcceeeeCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCccccccc
Q 011602 66 --WECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQL 142 (481)
Q Consensus 66 --~~~l~~la~~~~~~~i~iivG~~~~~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~ 142 (481)
...++.|++.++++++++++|++++.++++||++++|+ +|+++++|+|+|+. +.|+++|.+|+...
T Consensus 102 ~~g~~i~~l~~~A~~~~i~iv~G~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~----~~E~~~f~~G~g~~------- 170 (346)
T PLN02504 102 VPGPEVDRLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDPQGQYLGKHRKLMPT----ALERLIWGFGDGST------- 170 (346)
T ss_pred CCCHHHHHHHHHHHHcCCEEEEeeeecCCCceEEEEEEECCCCCEEeEEeeccCC----cccceeeecCCCCC-------
Confidence 02355666666678999999998888889999999999 89999999999864 25889999987431
Q ss_pred chhhHhhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHc
Q 011602 143 PNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSR 222 (481)
Q Consensus 143 p~~~~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~ 222 (481)
..+|+++++|||++||||.|||+ ..|.++++|||||++|++++. .+|..++++||.||
T Consensus 171 ----------------~~vf~~~~griG~lICyD~~fPe-~~r~la~~Gadii~~p~~~~~-----~~w~~~~rarA~En 228 (346)
T PLN02504 171 ----------------IPVYDTPIGKIGAVICWENRMPL-LRTAMYAKGIEIYCAPTADSR-----ETWQASMRHIALEG 228 (346)
T ss_pred ----------------CceEEcCCceEEEEEeccchhHH-HHHHHHHCCCeEEEECCCCCc-----hhHHHHHHHHHHcc
Confidence 05789999999999999999995 678999999999999998742 45667889999999
Q ss_pred CcEEEEEcCccC---------------CC----CceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhc
Q 011602 223 GGVYMYSNHQGC---------------DG----GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (481)
Q Consensus 223 ~~~vv~aN~~G~---------------~~----~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~ 282 (481)
++|+|.||++|. +. +...|.|+|+|+ |+|++++++...+ +++++++||++.+++.|.
T Consensus 229 ~~~Vv~aN~vg~~~~~~~~~~~~~~G~~~~~~~~~~~~~G~S~IvdP~G~vla~~~~~~---e~il~adiDl~~i~~~R~ 305 (346)
T PLN02504 229 GCFVLSANQFCRRKDYPPPPEYLFSGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYEG---EGLITADLDLGEIARAKF 305 (346)
T ss_pred CcEEEEecccccccccCcccccccccccccccccccccCcceEEECCCCCEecCCCCCC---CcEEEEEEcHHHHHHHHh
Confidence 999999999962 10 236789999999 9999998875332 479999999999988887
Q ss_pred cc
Q 011602 283 SI 284 (481)
Q Consensus 283 ~~ 284 (481)
..
T Consensus 306 ~~ 307 (346)
T PLN02504 306 DF 307 (346)
T ss_pred hC
Confidence 54
No 21
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=9.1e-43 Score=348.57 Aligned_cols=249 Identities=19% Similarity=0.155 Sum_probs=203.8
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc-----hhhh---hHH----HHHHHH
Q 011602 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE-----LDTV---THA----WECLKD 71 (481)
Q Consensus 4 ~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~-----~~~~---~~~----~~~l~~ 71 (481)
||||++|+++..+|++.|++++.+++++|+++|+|||||||+++|||+..+++.. +.+. +.+ ...+++
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELER 80 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHH
Confidence 6899999999899999999999999999999999999999999999987554321 1111 110 123455
Q ss_pred HHhcccCCCeEEEEcceeeeCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhc
Q 011602 72 LLLGDWTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVAL 150 (481)
Q Consensus 72 la~~~~~~~i~iivG~~~~~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~ 150 (481)
|++.++++++++++|++++.++++||++++|+ +|+++++|+|+|++ +.|+.||.+|+...
T Consensus 81 l~~~a~~~~i~iv~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~----~~E~~~~~~g~~~~--------------- 141 (297)
T cd07564 81 LAEAARENGIYVVLGVSERDGGTLYNTQLLIDPDGELLGKHRKLKPT----HAERLVWGQGDGSG--------------- 141 (297)
T ss_pred HHHHHHHcCcEEEEeeEeccCCceEEEEEEEcCCCCEeeeeeccCCC----chhhhhcccCCCCC---------------
Confidence 55555568999999998877889999999999 89999999999975 36889999987431
Q ss_pred cCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcc--cCCchHHHHHHHHHHHHHcCcEEEE
Q 011602 151 KQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHH--QLRKLDYRIRAFISATHSRGGVYMY 228 (481)
Q Consensus 151 ~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~--~~gk~~~~~~l~~~rA~e~~~~vv~ 228 (481)
..+|+++++|||++||||+|||+ ..|.++.+|||++++++++.+ ..+ ..+|..+.++||.+|++|+|+
T Consensus 142 --------~~v~~~~~~kig~~ICyD~~fPe-~~r~~a~~ga~ii~~~~~~~~~~~~~-~~~~~~~~~arAien~~~vv~ 211 (297)
T cd07564 142 --------LRVVDTPIGRLGALICWENYMPL-ARYALYAQGEQIHVAPWPDFSPYYLS-REAWLAASRHYALEGRCFVLS 211 (297)
T ss_pred --------ceEEecCCceEEEEEEhhcCCHH-HHHHHHHCCCeEEEECCCCccccccc-HHHHHHHHHHHHHhcCCEEEE
Confidence 05799999999999999999995 788999999999999876433 223 346677889999999999999
Q ss_pred EcCccCCC--------------CceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 229 SNHQGCDG--------------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 229 aN~~G~~~--------------~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
||++|.+. +...|.|+|+|+ |+|+++++++.++ ++++++++|++.+++.|...
T Consensus 212 ~N~vG~~~~~~~~~~~~~~~~~~~~~~~G~S~iv~P~G~il~~~~~~~---e~~l~a~id~~~~~~~r~~~ 279 (297)
T cd07564 212 ACQVVTEEDIPADCEDDEEADPLEVLGGGGSAIVGPDGEVLAGPLPDE---EGILYADIDLDDIVEAKLDF 279 (297)
T ss_pred cccccChhHcccccccccccccccccCCCceEEECCCCCeecCCCCCC---ceEEEEEecHHHHHHHHhcC
Confidence 99998531 235689999999 9999999987654 47999999999999888754
No 22
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=1.2e-42 Score=346.30 Aligned_cols=244 Identities=17% Similarity=0.118 Sum_probs=196.5
Q ss_pred eEEEEEeccC----CCCCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCcCCCCCCccccchhhhhH-HHHHHHHHHhcc
Q 011602 4 LKVATCNLNN----WALDFDCNLKNIKESIGRAKE--AGAVIRLGPELEITGYGCEDHFLELDTVTH-AWECLKDLLLGD 76 (481)
Q Consensus 4 ~rIAl~Q~~~----~~~d~~~N~~~i~~~i~~A~~--~gadLvvfPEl~ltGy~~~d~~~~~~~~~~-~~~~l~~la~~~ 76 (481)
++||++|+++ ..+|+++|++++.+++++|++ +|+|||||||+++|||...... ..++... ..+.++.|++.+
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~~-~~~~a~~~~~~~~~~l~~lA 79 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKWT-MDETACTVPGPETDIFAEAC 79 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcch-hhhhccCCCChhHHHHHHHH
Confidence 4799999998 678999999999999999986 5999999999999999753211 0111110 012334444444
Q ss_pred cCCCeEEEEcceeeeC---CeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccC
Q 011602 77 WTDGILCSFGMPVIKG---SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQ 152 (481)
Q Consensus 77 ~~~~i~iivG~~~~~~---~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~ 152 (481)
+++++++++|++++.+ +++||++++|+ +|+++++|||+|++. +..+|.+|+...
T Consensus 80 ~~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~-----~~e~~~~G~~~~----------------- 137 (291)
T cd07565 80 KEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV-----PIEPWYPGDLGT----------------- 137 (291)
T ss_pred HHCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC-----CcccccCCCCCc-----------------
Confidence 4689999999887653 68999999999 799999999999852 234578887521
Q ss_pred ceecccceeEeeC-CceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcC
Q 011602 153 KSVPFGYGFIQFL-DTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH 231 (481)
Q Consensus 153 ~~vpfg~~vf~~~-g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~ 231 (481)
.+|++. |+|||++||||+|||| ..|.++++|||+|++|++|+... ..+|..+.++||.||++++++||+
T Consensus 138 -------~v~~~~~g~riG~~ICyD~~fPe-~~r~la~~GAdill~ps~~~~~~--~~~w~~~~~aRA~En~~~vv~aN~ 207 (291)
T cd07565 138 -------PVCEGPKGSKIALIICHDGMYPE-IARECAYKGAELIIRIQGYMYPA--KDQWIITNKANAWCNLMYTASVNL 207 (291)
T ss_pred -------eeeECCCCCEEEEEEEcCCCCcH-HHHHHHHCCCeEEEECCcCCCCc--chHHHHHHHHHHHhcCcEEEEecc
Confidence 467764 6799999999999996 78899999999999999998643 346777889999999999999999
Q ss_pred ccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 232 QGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 232 ~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
+|.+ +...|.|+|+|+ |+|+++++++.++ +++++++||++.++..|...
T Consensus 208 ~G~~-~~~~~~G~S~ivdP~G~ila~~~~~~---e~i~~adid~~~~~~~R~~~ 257 (291)
T cd07565 208 AGFD-GVFSYFGESMIVNFDGRTLGEGGREP---DEIVTAELSPSLVRDARKNW 257 (291)
T ss_pred cccC-CCceeeeeeEEECCCCCEEEeCCCCC---CcEEEEEEcHHHHHHHHhcC
Confidence 9987 567899999999 9999999988764 37999999999999888753
No 23
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2e-42 Score=339.09 Aligned_cols=241 Identities=24% Similarity=0.236 Sum_probs=204.5
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc-----hhhhhHHHHHHHHHHhcccCC
Q 011602 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE-----LDTVTHAWECLKDLLLGDWTD 79 (481)
Q Consensus 5 rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~-----~~~~~~~~~~l~~la~~~~~~ 79 (481)
|||++|+++..+|++.|++++++++++|+++|+|||||||+++|||.+.+.... ........+.+.++++ ++
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~ 77 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPIDGPTVRLFSELAK---EL 77 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCCCCcHHHHHHHHHH---Hc
Confidence 699999999999999999999999999999999999999999999987543211 1112234455666665 47
Q ss_pred CeEEEEcceeeeC--CeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceec
Q 011602 80 GILCSFGMPVIKG--SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVP 156 (481)
Q Consensus 80 ~i~iivG~~~~~~--~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vp 156 (481)
++++++|+++..+ +++||++++|+ +|++++.|+|.||+. .|.+||++|+..
T Consensus 78 ~i~i~~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~----~e~~~~~~G~~~---------------------- 131 (258)
T cd07584 78 GVYIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG----LEKQYFREGEQY---------------------- 131 (258)
T ss_pred CeEEEEeehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc----hhhhhccCCCCC----------------------
Confidence 9999999987643 68999999999 899999999999974 488899999754
Q ss_pred ccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCC
Q 011602 157 FGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDG 236 (481)
Q Consensus 157 fg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~ 236 (481)
.+|+++++|+|++||||+|||+ ..|.++.+|||+|++|++|+.. ....|....+.||.||+++++++|++|.+
T Consensus 132 ---~~~~~~~~~~g~~IC~D~~fpe-~~r~~~~~gadll~~ps~~~~~--~~~~~~~~~~~rA~En~~~vv~~n~~g~~- 204 (258)
T cd07584 132 ---PVFDTPFGKIGVMICYDMGFPE-VARILTLKGAEVIFCPSAWREQ--DADIWDINLPARALENTVFVAAVNRVGNE- 204 (258)
T ss_pred ---eeEEcCCceEEEEEEcCccChH-HHHHHHHCCCcEEEECCccCCC--CchHHHHHHHHHHHhCCcEEEEECccccC-
Confidence 5789999999999999999995 6889999999999999998753 23455567889999999999999999987
Q ss_pred CceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 237 GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 237 ~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
++..|.|+|+|+ |+|+++++++.+++ +++++++|++.++..|.+.
T Consensus 205 ~~~~~~G~S~ii~p~G~il~~~~~~~~---~~~~~~id~~~~~~~r~~~ 250 (258)
T cd07584 205 GDLVLFGKSKILNPRGQVLAEASEEAE---EILYAEIDLDAIADYRMTL 250 (258)
T ss_pred CCceecceeEEECCCCceeeecCCCCC---cEEEEEeCHHHHHHHHhhC
Confidence 667899999999 99999999987753 7999999999999888754
No 24
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.3e-42 Score=339.18 Aligned_cols=242 Identities=23% Similarity=0.259 Sum_probs=205.0
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchh--hhhHHHHHHHHHHhcccCCCeE
Q 011602 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD--TVTHAWECLKDLLLGDWTDGIL 82 (481)
Q Consensus 5 rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~--~~~~~~~~l~~la~~~~~~~i~ 82 (481)
|||++|+++..+|++.|++++++++++|+++|+|||||||+++|||.+.+....+. ......+.+.++++ +++++
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~~~ 77 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALSREAEVPDGPSTQALSDLAR---RYGLT 77 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcccchhcccCCChHHHHHHHHHH---HcCcE
Confidence 69999999989999999999999999999999999999999999999876443311 11223445555555 58999
Q ss_pred EEEcceeeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccceeE
Q 011602 83 CSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI 162 (481)
Q Consensus 83 iivG~~~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~vf 162 (481)
+++|++++.++++||++++|++++.++.|+|.||++ .|..||++|+.. .+|
T Consensus 78 i~~G~~~~~~~~~yNs~~vi~~~g~i~~y~K~~l~~----~E~~~~~~G~~~-------------------------~v~ 128 (261)
T cd07585 78 ILAGLIEKAGDRPYNTYLVCLPDGLVHRYRKLHLFR----REHPYIAAGDEY-------------------------PVF 128 (261)
T ss_pred EEEeccccCCCceeEEEEEECCCCcEeEEeeecCCc----cccceEcCCCCC-------------------------ceE
Confidence 999999887889999999999544579999999985 488899999754 578
Q ss_pred eeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCC--chHHHHHHHHHHHHHcCcEEEEEcCccCCCCcee
Q 011602 163 QFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLR--KLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (481)
Q Consensus 163 ~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~g--k~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (481)
+++++|+|++||+|+|||+ ..|.++++|||+|++|++++...+ ....|...++.||.|++++++++|++|.+ ++..
T Consensus 129 ~~~~~rig~~IC~D~~~pe-~~r~l~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~-~~~~ 206 (261)
T cd07585 129 ATPGVRFGILICYDNHFPE-NVRATALLGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNGVGRD-GGEV 206 (261)
T ss_pred EcCCceEEEEEEcCCcCcH-HHHHHHHCCCCEEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEecccccC-CCce
Confidence 9999999999999999996 678999999999999999876432 23345567789999999999999999987 5788
Q ss_pred eeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcc
Q 011602 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (481)
Q Consensus 241 f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~ 283 (481)
|.|.|+|+ |+|+++++++.+++ ++++++||++.++..|.+
T Consensus 207 ~~G~S~i~~p~G~v~~~~~~~~e---~~l~~~id~~~~~~~r~~ 247 (261)
T cd07585 207 FPGGAMILDPYGRVLAETTSGGD---GMVVADLDLDLINTVRGR 247 (261)
T ss_pred ecceEEEECCCCCEEeccCCCCC---cEEEEEecHHHHHHhhcc
Confidence 99999999 99999999988753 789999999999988864
No 25
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.9e-42 Score=337.29 Aligned_cols=242 Identities=21% Similarity=0.143 Sum_probs=204.2
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccc---chhhhhHHHHHHHHHHhcccCCCeE
Q 011602 6 VATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL---ELDTVTHAWECLKDLLLGDWTDGIL 82 (481)
Q Consensus 6 IAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~---~~~~~~~~~~~l~~la~~~~~~~i~ 82 (481)
||++|+++. +|+++|++++.+++++|+++|+|||||||++++||...+... ...+.+...+.+.++++ +++++
T Consensus 1 ia~~Q~~~~-~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~i~ 76 (255)
T cd07581 1 VALAQFASS-GDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLAR---ELGIT 76 (255)
T ss_pred CEEEEeeCC-CCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHH---HcCeE
Confidence 699999986 999999999999999999999999999999999998765311 11122233444555554 58999
Q ss_pred EEEcceeeeC-CeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccce
Q 011602 83 CSFGMPVIKG-SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (481)
Q Consensus 83 iivG~~~~~~-~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~ 160 (481)
+++|++++.+ +++||++++|+ +|++++.|+|.||+++..|.|..||++|+... ..
T Consensus 77 iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~-----------------------~~ 133 (255)
T cd07581 77 VVAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELP-----------------------PV 133 (255)
T ss_pred EEEEeeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCC-----------------------ce
Confidence 9999998765 48999999996 89999999999998766678999999998620 04
Q ss_pred eEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCCcee
Q 011602 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (481)
Q Consensus 161 vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (481)
+|+++++|+|++||||.|||+ ..+.++.+|||+|++|++|+...+...+|..+.+.||.|++++++.||++|. .
T Consensus 134 ~~~~~~~kig~~IC~D~~~pe-~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~-----~ 207 (255)
T cd07581 134 VFVVGGVKVGLATCYDLRFPE-LARALALAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQAGP-----R 207 (255)
T ss_pred EEecCCceEEEEEEecccCHH-HHHHHHHCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcCcCC-----C
Confidence 678888999999999999995 6789999999999999998765555567778899999999999999999985 5
Q ss_pred eeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 241 f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
|.|.|+|+ |+|+++++.+.. ++++++++|++.++..|.+.
T Consensus 208 ~~G~S~i~~p~G~i~~~~~~~----~~~l~~~id~~~~~~~r~~~ 248 (255)
T cd07581 208 GIGRSMVVDPLGVVLADLGER----EGLLVADIDPERVEEAREAL 248 (255)
T ss_pred cccceEEECCCcceeeecCCC----CcEEEEEeCHHHHHHHHHhC
Confidence 88999999 999999998753 37999999999999988765
No 26
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.9e-42 Score=342.96 Aligned_cols=233 Identities=18% Similarity=0.139 Sum_probs=190.9
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 5 rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
|||++|+++.. |+++|++++.+++++|+++|+|||||||+++|||...+... ........+.|+++++ +++++++
T Consensus 1 ria~~Q~~~~~-d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~~~~-~~~~~~~~~~l~~lA~---~~~i~iv 75 (279)
T cd07579 1 RIAVAQFAPTP-DIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPASEA-ESDTGPAVSALRRLAR---RLRLYLV 75 (279)
T ss_pred CEEEEeccCcc-CHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChHHhc-ccCCCHHHHHHHHHHH---HcCeEEE
Confidence 69999999875 99999999999999999999999999999999997643211 1122234455566665 4899999
Q ss_pred EcceeeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccceeEee
Q 011602 85 FGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQF 164 (481)
Q Consensus 85 vG~~~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~vf~~ 164 (481)
+|++++.++++||++++|+++++++.|+|+||++ .|+.||++|+.. .+|++
T Consensus 76 ~G~~~~~~~~~yNs~~vi~~~G~i~~Y~K~hL~~----~E~~~f~~G~~~-------------------------~v~~~ 126 (279)
T cd07579 76 AGFAEADGDGLYNSAVLVGPEGLVGTYRKTHLIE----PERSWATPGDTW-------------------------PVYDL 126 (279)
T ss_pred EeceEccCCcEEEEEEEEeCCeeEEEEecccCCC----cchhhccCCCCC-------------------------eeEEc
Confidence 9999888889999999999555889999999985 488999999754 57899
Q ss_pred CCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcc-----------------cCCchHHHHHHHHHHHHHcCcEEE
Q 011602 165 LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHH-----------------QLRKLDYRIRAFISATHSRGGVYM 227 (481)
Q Consensus 165 ~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~-----------------~~gk~~~~~~l~~~rA~e~~~~vv 227 (481)
+++|||++||||+|||+ .+|.++++|||+|++|++|+. ..++..++|.++++||.||+++++
T Consensus 127 ~~~kiG~~ICyD~~fPe-~~r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~aRA~EN~~~vv 205 (279)
T cd07579 127 PLGRVGLLIGHDALFPE-AGRVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWHLARVRAGENNVYFA 205 (279)
T ss_pred CceeEEEEEeccccCcH-HHHHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHHHhHhHHhhCCeEEE
Confidence 99999999999999996 688999999999999999753 112212455688999999999999
Q ss_pred EEcCccCCCCceeeeccEEEE-eCCcEEEe----ecCCCCCceeEEEEEeecchhhh
Q 011602 228 YSNHQGCDGGRLYFDGCSCVV-VNGDMIAQ----GSQFSLKDVEIVVAQVDLDAVAG 279 (481)
Q Consensus 228 ~aN~~G~~~~~~~f~G~S~I~-p~G~ila~----~~~~~e~~~~v~~a~vDl~~~~~ 279 (481)
.||++|.. ..|.|+|+|+ |+|.++.. +.. ++++++++||++.+++
T Consensus 206 ~aN~~g~~---~~~~G~S~ii~P~G~v~~~~~~~~~~----~e~~l~a~id~~~~~~ 255 (279)
T cd07579 206 FANVPDPA---RGYTGWSGVFGPDTFAFPRQEAAIGD----EEGIAWALIDTSNLDS 255 (279)
T ss_pred EeeccCCc---cccccccEEECCCeEEcchhhcccCC----CCcEEEEEecchhhcc
Confidence 99999865 3478999999 99999843 322 3579999999998875
No 27
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.1e-42 Score=341.08 Aligned_cols=238 Identities=21% Similarity=0.215 Sum_probs=195.7
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhh----HHHHHHHHHHhcccCC
Q 011602 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVT----HAWECLKDLLLGDWTD 79 (481)
Q Consensus 4 ~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~----~~~~~l~~la~~~~~~ 79 (481)
+|||++|+++.++|++.|++++.+++++|+++|+|||||||+++|||++.+......+.+ ...+.+.++++ ++
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~ 77 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEPIPGPTTARFAELAR---EH 77 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhcccCCCHHHHHHHHHHH---Hc
Confidence 589999999999999999999999999999999999999999999998765422222221 22334455544 58
Q ss_pred CeEEEEcceeee--CCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecc
Q 011602 80 GILCSFGMPVIK--GSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPF 157 (481)
Q Consensus 80 ~i~iivG~~~~~--~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpf 157 (481)
++++++|++++. ++++||++++|+++++++.|+|.|++ +.|.+||.+|+..
T Consensus 78 ~i~ii~G~~~~~~~~~~~yNs~~vi~~~g~~~~y~K~h~~----~~e~~~~~~g~~~----------------------- 130 (258)
T cd07578 78 DCYIVVGLPEVDSRSGIYYNSAVLIGPSGVIGRHRKTHPY----ISEPKWAADGDLG----------------------- 130 (258)
T ss_pred CcEEEEecceecCCCCCeeEEEEEECCCCcEEeEeeecCC----cccccccCCCCCC-----------------------
Confidence 999999998864 46899999999965599999999975 3588999998732
Q ss_pred cceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCC
Q 011602 158 GYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGG 237 (481)
Q Consensus 158 g~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~ 237 (481)
..+|+++++|+|++||||+|||+ ..|.++++|||+|++|++|+........ ...||.||+++++++|++|.+ +
T Consensus 131 -~~v~~~~~~rig~~IC~D~~fpe-~~r~~~~~ga~ll~~ps~~~~~~~~~~~----~~~rA~en~~~vv~an~~G~~-~ 203 (258)
T cd07578 131 -HQVFDTEIGRIALLICMDIHFFE-TARLLALGGADVICHISNWLAERTPAPY----WINRAFENGCYLIESNRWGLE-R 203 (258)
T ss_pred -ceEEECCCccEEEEEeeCCCchH-HHHHHHHcCCCEEEEcCCCCCCCCcchH----HHHhhhcCCeEEEEecceecc-C
Confidence 15789999999999999999995 6788999999999999998753332222 257999999999999999987 5
Q ss_pred ceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhc
Q 011602 238 RLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (481)
Q Consensus 238 ~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~ 282 (481)
+..|.|+|+|+ |+|+++++.+.. +++++++||++.++..|.
T Consensus 204 ~~~~~G~S~ii~p~G~il~~~~~~----e~~~~a~id~~~~~~~r~ 245 (258)
T cd07578 204 GVQFSGGSCIIEPDGTIQASIDSG----DGVALGEIDLDRARHRQF 245 (258)
T ss_pred CcceeeEEEEECCCCcEeeccCCC----CceEEEEecchHhhhhhc
Confidence 67899999999 999999987642 378999999999987775
No 28
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=6.2e-42 Score=334.68 Aligned_cols=239 Identities=18% Similarity=0.207 Sum_probs=198.7
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEE
Q 011602 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILC 83 (481)
Q Consensus 4 ~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~i 83 (481)
||||++|+++.++|++.|++++.+++++|++ |+|||||||+++|||.+.+......+.....+.+.++++ ++++.+
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~la~---~~~i~i 76 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNAEALAEPMNGPTLQWMKAQAK---KKGAAI 76 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccHHHhhcccCChHHHHHHHHHH---HCCeEE
Confidence 7999999999999999999999999999997 999999999999999875543333333344455666665 478888
Q ss_pred EEcceeeeCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccceeE
Q 011602 84 SFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI 162 (481)
Q Consensus 84 ivG~~~~~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~vf 162 (481)
+.|++++.++++||++++++ +|++ ..|+|.||++. ..|..||++|+.. .+|
T Consensus 77 ~~~~~~~~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~--~~e~~~~~~G~~~-------------------------~~~ 128 (252)
T cd07575 77 TGSLIIKEGGKYYNRLYFVTPDGEV-YHYDKRHLFRM--AGEHKVYTAGNER-------------------------VIV 128 (252)
T ss_pred EEEEEEccCCceEEEEEEECCCCCE-EEEeeeecCCC--CCccceecCCCCc-------------------------eEE
Confidence 88888877889999999999 6664 59999999864 3688899999754 578
Q ss_pred eeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCCceeee
Q 011602 163 QFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFD 242 (481)
Q Consensus 163 ~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~ 242 (481)
+++++|||++||+|+|||+ ..|.++ +||+|++|++||... ...|..+.++||.+|++++++||++|.++.+..|.
T Consensus 129 ~~~~~~ig~~IC~D~~~pe-~~r~~~--~a~lil~~s~~~~~~--~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~~ 203 (252)
T cd07575 129 EYKGWKILLQVCYDLRFPV-WSRNTN--DYDLLLYVANWPAPR--RAAWDTLLKARAIENQAYVIGVNRVGTDGNGLEYS 203 (252)
T ss_pred EECCEEEEEEEEeccCChH-HHHhhc--CCCEEEEeCCCCCCc--hHHHHHHhHHHHhhccceEEEecccccCCCCceEc
Confidence 9999999999999999996 455554 499999999987643 24555677889999999999999999885468899
Q ss_pred ccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcc
Q 011602 243 GCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (481)
Q Consensus 243 G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~ 283 (481)
|+|+|+ |+|+++++++.+ ++++++++|++.++..|..
T Consensus 204 G~S~i~~p~G~~l~~~~~~----e~~i~~~id~~~~~~~r~~ 241 (252)
T cd07575 204 GDSAVIDPLGEPLAEAEED----EGVLTATLDKEALQEFREK 241 (252)
T ss_pred ceeEEECCCCceeeEcCCC----ceEEEEEECHHHHHHHHhh
Confidence 999999 999999998775 3699999999999887764
No 29
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=4.5e-42 Score=341.76 Aligned_cols=238 Identities=16% Similarity=0.031 Sum_probs=192.9
Q ss_pred eEEEEEeccCCCCCH-------HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchh----------------
Q 011602 4 LKVATCNLNNWALDF-------DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELD---------------- 60 (481)
Q Consensus 4 ~rIAl~Q~~~~~~d~-------~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~---------------- 60 (481)
.|+|++|+.+.+.|. ++|++++.++|++|++.|||||||||+++|||...+......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (299)
T cd07567 1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLD 80 (299)
T ss_pred CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhccccccccccccccc
Confidence 379999999998888 999999999999999999999999999999998765432110
Q ss_pred -hhhHHHHHHHHHHhcccCCCeEEEEcceeee-----------C-CeeEEEEEEEe-CCeEEEEeeccccCCCCCccccc
Q 011602 61 -TVTHAWECLKDLLLGDWTDGILCSFGMPVIK-----------G-SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELR 126 (481)
Q Consensus 61 -~~~~~~~~l~~la~~~~~~~i~iivG~~~~~-----------~-~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~ 126 (481)
........++.|++.++++++++++|++++. + +++||++++|+ +|+++++|||+||+ .|..
T Consensus 81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-----~E~~ 155 (299)
T cd07567 81 PDRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-----GEPG 155 (299)
T ss_pred ccccCchHHHHHHHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc-----cccc
Confidence 0101123455555555568999999988763 2 26999999999 89999999999996 5888
Q ss_pred ceecCCCCCcccccccchhhHhhccCceecccceeEeeCCc-eEEEEeeccCCCCChHHHHHHHC-CCcEEEccCCCccc
Q 011602 127 WFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDT-AVAAEICEELFTPIPPHADLALN-GVEVFMNASGSHHQ 204 (481)
Q Consensus 127 ~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~vf~~~g~-riGv~IC~D~~~pe~~~r~la~~-Gadlil~psa~~~~ 204 (481)
||.+|+... .+|+++++ |||++||||+|||| ..|.++++ |||+|++|++|+..
T Consensus 156 ~~~~G~~~~------------------------~vf~t~~g~kiGvlICyD~~FPE-~~r~la~~~GAdlil~paaw~~~ 210 (299)
T cd07567 156 FDVPPEPEI------------------------VTFDTDFGVTFGIFTCFDILFKE-PALELVKKLGVDDIVFPTAWFSE 210 (299)
T ss_pred ccCCCCCCc------------------------eEEECCCCCEEEEEEEeeccchH-HHHHHHHhCCCCEEEECCccCCC
Confidence 999986320 57899865 99999999999996 67889998 99999999999754
Q ss_pred CCchHHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-eC-CcEEEeecCCCCCceeEEEEEeecchhh
Q 011602 205 LRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VN-GDMIAQGSQFSLKDVEIVVAQVDLDAVA 278 (481)
Q Consensus 205 ~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~-G~ila~~~~~~e~~~~v~~a~vDl~~~~ 278 (481)
.+. .+|..++++||.+|++|++.||++|.. .|.|+|+|+ |+ |+++++++...+ +++++++||++..+
T Consensus 211 ~~~-~~w~~l~~arA~eN~~~vi~~N~~g~~----~~~G~S~iv~P~~G~v~a~~~~~~~--e~~l~~~id~~~~~ 279 (299)
T cd07567 211 LPF-LTAVQIQQAWAYANGVNLLAANYNNPS----AGMTGSGIYAGRSGALVYHYDNEPG--GKLLVAEVPKLPSR 279 (299)
T ss_pred CCc-hhHHHHHHHHHHHcCceEEEecCCCCc----CccccceEEcCCCCcEEEEecCCCC--ceEEEEEccCCccc
Confidence 333 467778899999999999999999853 367999999 99 999999865432 47999999998664
No 30
>PLN02798 nitrilase
Probab=100.00 E-value=1.5e-41 Score=338.08 Aligned_cols=250 Identities=17% Similarity=0.133 Sum_probs=204.3
Q ss_pred CceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCC-cCCCCCCccccch-hhhhHHHHHHHHHHhcccCC
Q 011602 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELE-ITGYGCEDHFLEL-DTVTHAWECLKDLLLGDWTD 79 (481)
Q Consensus 2 ~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~-ltGy~~~d~~~~~-~~~~~~~~~l~~la~~~~~~ 79 (481)
+.||||++|+++ .+|++.|++++++++++|+++|+|||||||++ ++||.+.+.+... .+.+...+.|++++++ +
T Consensus 9 ~~~ria~~Q~~~-~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~---~ 84 (286)
T PLN02798 9 SSVRVAVAQMTS-TNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARE---S 84 (286)
T ss_pred CccEEEEEEccC-CCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHH---c
Confidence 359999999986 59999999999999999999999999999984 6898765433211 2223345566666664 7
Q ss_pred CeEEEEcc-eee--eCCeeEEEEEEEe-CCeEEEEeeccccC-----CCCCcccccceecCCCCCcccccccchhhHhhc
Q 011602 80 GILCSFGM-PVI--KGSERYNCQVLCL-NRKIIMIRPKLWLA-----NDGNYRELRWFTAWKQKDQLEDFQLPNEISVAL 150 (481)
Q Consensus 80 ~i~iivG~-~~~--~~~~~yNsa~vi~-~G~il~~y~K~~Lp-----~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~ 150 (481)
++++++|. +++ .++++||++++|+ +|++++.|+|+||+ ..+.+.|..||++|+..
T Consensus 85 ~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~~---------------- 148 (286)
T PLN02798 85 GLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKTI---------------- 148 (286)
T ss_pred CeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCee----------------
Confidence 99999984 444 4578999999998 89999999999994 23335688899999754
Q ss_pred cCceecccceeEeeCCceEEEEeeccCCCCChHHHHHH-HCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEE
Q 011602 151 KQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLA-LNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYS 229 (481)
Q Consensus 151 ~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la-~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~a 229 (481)
.+|+++++|||++||||+|||+ ..|.++ ++|||+|++|++++...+. .+|..+.++||.||+++++.+
T Consensus 149 ---------~v~~~~~~k~g~~IC~D~~fpe-~~r~~a~~~Gadlil~ps~~~~~~~~-~~~~~~~~~rAien~~~vv~a 217 (286)
T PLN02798 149 ---------VAVDSPVGRLGLTVCYDLRFPE-LYQQLRFEHGAQVLLVPSAFTKPTGE-AHWEVLLRARAIETQCYVIAA 217 (286)
T ss_pred ---------eEEecCCceEEEEEEEcccChH-HHHHHHHhCCCcEEEECCcCCCCCcH-HHHHHHHHHHHHHhCCEEEEe
Confidence 5789999999999999999995 677888 9999999999998865543 456677899999999999999
Q ss_pred cCccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 230 NHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 230 N~~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
|++|..+.+..|.|+|+|+ |+|+++++++...+ +++++++||++.++..|.+.
T Consensus 218 n~~G~~~~~~~~~G~S~ii~p~G~il~~~~~~~~--e~~~~a~id~~~~~~~r~~~ 271 (286)
T PLN02798 218 AQAGKHNEKRESYGHALIIDPWGTVVARLPDRLS--TGIAVADIDLSLLDSVRTKM 271 (286)
T ss_pred cccCcCCCCceeeeeeEEECCCccchhhcCCCCC--CCEEEEEecHHHHHHHHHhC
Confidence 9999875567889999999 99999999875222 37999999999998888653
No 31
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.4e-41 Score=333.30 Aligned_cols=237 Identities=22% Similarity=0.213 Sum_probs=192.7
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHH--HHHHHHHHhcccCCCeE
Q 011602 5 KVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHA--WECLKDLLLGDWTDGIL 82 (481)
Q Consensus 5 rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~--~~~l~~la~~~~~~~i~ 82 (481)
|||++|+++..+|++.|++++.+++++|+ ||||||||++++||...+......+.+.. .+.++.|++.+++++++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 77 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSKEEVASLAESIPDGPTTRFLQELARETGAY 77 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCCHHHHHHhhcccCCChHHHHHHHHHHHhCcE
Confidence 69999999999999999999999998873 99999999999999864321111111110 12344445544558999
Q ss_pred EEEcceeeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccceeE
Q 011602 83 CSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFI 162 (481)
Q Consensus 83 iivG~~~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~vf 162 (481)
+++|+++..++++||++++|++++++++|+|+||++ .|++||++|+... .+|
T Consensus 78 ii~G~~~~~~~~~yNs~~vi~~~Gi~~~y~K~~l~~----~e~~~~~~G~~~~------------------------~~~ 129 (259)
T cd07577 78 IVAGLPERDGDKFYNSAVVVGPEGYIGIYRKTHLFY----EEKLFFEPGDTGF------------------------RVF 129 (259)
T ss_pred EEecceeccCCceEEEEEEECCCccEeeEeeccCCh----hhhccccCCCCCC------------------------ceE
Confidence 999999888889999999999544999999999974 5889999997321 578
Q ss_pred eeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCC---Cce
Q 011602 163 QFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDG---GRL 239 (481)
Q Consensus 163 ~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~---~~~ 239 (481)
+++++|+|++||||+|||+ ..|.++.+|||+|++|++|+.. .|..+.+.||.||++|+++||++|.+. ++.
T Consensus 130 ~~~~~~ig~~IC~D~~fpe-~~r~~~~~Gadli~~ps~~~~~-----~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~ 203 (259)
T cd07577 130 DIGDIRIGVMICFDWYFPE-AARTLALKGADIIAHPANLVLP-----YCPKAMPIRALENRVFTITANRIGTEERGGETL 203 (259)
T ss_pred EeCCcEEEEEEEcCcccch-HHHHHHHcCCCEEEECCccCCc-----hhhhhhhHhhhhcCceEEEEecCcccCCCCCCc
Confidence 9999999999999999996 6789999999999999998632 344567899999999999999999762 457
Q ss_pred eeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhh
Q 011602 240 YFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFR 281 (481)
Q Consensus 240 ~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R 281 (481)
.|.|.|+|+ |+|+++++++.+++ +++++++|++.++..|
T Consensus 204 ~~~G~S~i~~p~G~i~~~~~~~~e---~~~~~~id~~~~~~~~ 243 (259)
T cd07577 204 RFIGKSQITSPKGEVLARAPEDGE---EVLVAEIDPRLARDKR 243 (259)
T ss_pred eEeeeeEEECCCCCEEeecCCCCC---cEEEEEEchHHhhccc
Confidence 799999999 99999999887643 6899999998877544
No 32
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1e-40 Score=333.33 Aligned_cols=253 Identities=18% Similarity=0.112 Sum_probs=193.3
Q ss_pred EEEEEeccCCC----CCHHHHHHHHHHHHHHHHH-----CCCeEEEcCCCCcCCCCCCccccchhhhhHHH----HHHHH
Q 011602 5 KVATCNLNNWA----LDFDCNLKNIKESIGRAKE-----AGAVIRLGPELEITGYGCEDHFLELDTVTHAW----ECLKD 71 (481)
Q Consensus 5 rIAl~Q~~~~~----~d~~~N~~~i~~~i~~A~~-----~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~----~~l~~ 71 (481)
.++++|..+.. +|+++|++++.++|++|++ +|+|||||||+++|||.+.+......+.+.+. ..++.
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~ 81 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEA 81 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHH
Confidence 57888988765 8999999999999999987 47999999999999998765422111111111 13344
Q ss_pred HHhcccCCCeEEEEcceeeeC---CeeEEEEEEEe-CCeEEEEeeccccCCCCC-------cccc-cceecCCCCCcccc
Q 011602 72 LLLGDWTDGILCSFGMPVIKG---SERYNCQVLCL-NRKIIMIRPKLWLANDGN-------YREL-RWFTAWKQKDQLED 139 (481)
Q Consensus 72 la~~~~~~~i~iivG~~~~~~---~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~-------~~E~-~~f~~G~~~~~~~~ 139 (481)
|++.++++++++++|+.++.+ +++||++++|+ +|+++++|+|+||+.... +.|. .++.+|..
T Consensus 82 l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~~~g~g~~------ 155 (294)
T cd07582 82 LGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIEVYGYGLD------ 155 (294)
T ss_pred HHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcccCCCccc------
Confidence 444444589999999887643 68999999999 899999999999975211 0110 11222100
Q ss_pred cccchhhHhhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHH
Q 011602 140 FQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISAT 219 (481)
Q Consensus 140 ~~~p~~~~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA 219 (481)
..| .+|+++++|||++||||+|||+ ..|.++++|||+|++|+++++..+ ...|..+.++||
T Consensus 156 ---------------~~~--~v~~~~~~~iG~~ICyD~~fpe-~~r~la~~Gadlil~psa~~~~~~-~~~~~~~~~arA 216 (294)
T cd07582 156 ---------------ALF--PVADTEIGNLGCLACEEGLYPE-VARGLAMNGAEVLLRSSSEVPSVE-LDPWEIANRARA 216 (294)
T ss_pred ---------------ccc--eeecCCCceEEEEEeecccChH-HHHHHHHCCCcEEEEcCCCCCCcc-hhhHHHHHHHHH
Confidence 001 5788899999999999999996 688999999999999999986543 345556789999
Q ss_pred HHcCcEEEEEcCccCCCC---ceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 220 HSRGGVYMYSNHQGCDGG---RLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 220 ~e~~~~vv~aN~~G~~~~---~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
.+|+++++++|++|..+. ...|.|+|+|+ |+|+++++++.+.+ +++++++||++.+++.|.+.
T Consensus 217 ~en~~~vv~aN~~G~~~~~~~~~~~~G~S~ivdp~G~vla~~~~~~~--e~il~~~id~~~~~~~R~~~ 283 (294)
T cd07582 217 LENLAYVVSANSGGIYGSPYPADSFGGGSMIVDYKGRVLAEAGYGPG--SMVAGAEIDIEALRRARARP 283 (294)
T ss_pred HhcCCEEEEecccccCcccccCceecceeEEECCCCCEEEeCCCCCC--CeEEEEEEcHHHHHHHHHhc
Confidence 999999999999987643 36899999999 99999999987722 37999999999999888753
No 33
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=2.5e-40 Score=322.36 Aligned_cols=239 Identities=26% Similarity=0.306 Sum_probs=207.4
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc----hhhhhHHHHHHHHHHhcccCCCe
Q 011602 6 VATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE----LDTVTHAWECLKDLLLGDWTDGI 81 (481)
Q Consensus 6 IAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~----~~~~~~~~~~l~~la~~~~~~~i 81 (481)
||++|+++..+|+++|++++.+++++|+++|+|||||||++++||...+.... ....+...+.+.++++ ++++
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~---~~~i 77 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEELDGPTLEALAELAK---ELGI 77 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhhhhcccCCchHHHHHHHHHH---HhCe
Confidence 69999999989999999999999999999999999999999999988654432 1222344455666665 4899
Q ss_pred EEEEcceeeeCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccce
Q 011602 82 LCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (481)
Q Consensus 82 ~iivG~~~~~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~ 160 (481)
++++|++++.++++||+++++. +|++++.|+|.||++ |.|..||++|+.. .
T Consensus 78 ~ii~G~~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~---~~E~~~~~~g~~~-------------------------~ 129 (253)
T cd07197 78 YIVAGIAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD---FGERRYFSPGDEF-------------------------P 129 (253)
T ss_pred EEEeeeEEccCCceEEEEEEECCCCeEEEEEEEeecCC---CcccceecCCCCC-------------------------c
Confidence 9999999887889999999999 689999999999986 5788999999754 5
Q ss_pred eEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCCcee
Q 011602 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (481)
Q Consensus 161 vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (481)
+|+++++|+|++||+|+|+|+ ..+.+..+|+|+|++|+++++.. ..++..+.+.||.++++++++||++|.. ++..
T Consensus 130 ~f~~~~~~ig~~IC~d~~~~~-~~~~~~~~g~dli~~ps~~~~~~--~~~~~~~~~~~A~e~~~~vv~~n~~G~~-~~~~ 205 (253)
T cd07197 130 VFDTPGGKIGLLICYDLRFPE-LARELALKGADIILVPAAWPTAR--REHWELLLRARAIENGVYVVAANRVGEE-GGLE 205 (253)
T ss_pred eEEcCCceEEEEEEecCCCcH-HHHHHHHCCCcEEEECCcCCCcc--hHHHHHHHHHHHHHhCCeEEEecCCCCC-CCcc
Confidence 799999999999999999996 57899999999999999998743 4577788999999999999999999987 6788
Q ss_pred eeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcc
Q 011602 241 FDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (481)
Q Consensus 241 f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~ 283 (481)
|.|.|.|+ |+|+++++.+.+ + +++++++|++.++..|..
T Consensus 206 ~~G~S~i~~p~G~~~~~~~~~-~---~~~~~~id~~~~~~~r~~ 245 (253)
T cd07197 206 FAGGSMIVDPDGEVLAEASEE-E---GILVAELDLDELREARKR 245 (253)
T ss_pred ccceeEEECCCCceeeecCCC-C---cEEEEEeCHHHHHHHHhh
Confidence 99999999 999999999887 3 689999999999887763
No 34
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.6e-40 Score=329.61 Aligned_cols=244 Identities=17% Similarity=0.065 Sum_probs=195.2
Q ss_pred eEEEEEeccCCC-CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCC---CCCccc--c-----chhhhhHHHHHHHHH
Q 011602 4 LKVATCNLNNWA-LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGY---GCEDHF--L-----ELDTVTHAWECLKDL 72 (481)
Q Consensus 4 ~rIAl~Q~~~~~-~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy---~~~d~~--~-----~~~~~~~~~~~l~~l 72 (481)
||||++|+++.. +|+++|++++++++++|+++|||||||||++++|| ...+.. . ...+.....+.+.++
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAALTPDYVALFSEL 80 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999874 89999999999999999999999999999999985 322221 0 011122233444555
Q ss_pred HhcccCCCeEEEEcc-eeeeCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhc
Q 011602 73 LLGDWTDGILCSFGM-PVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVAL 150 (481)
Q Consensus 73 a~~~~~~~i~iivG~-~~~~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~ 150 (481)
++ ++++++++|. +++.++++||++++++ +|.+ +.|+|.||++++ .|..+|.+|+..
T Consensus 81 a~---~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e--~~~~~~~~G~~~---------------- 138 (280)
T cd07574 81 AR---KYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE--REEWGISGGDKL---------------- 138 (280)
T ss_pred HH---HhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh--hhcccccCCCCc----------------
Confidence 54 5899999995 5667889999999999 5665 999999998642 234457888754
Q ss_pred cCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEc
Q 011602 151 KQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSN 230 (481)
Q Consensus 151 ~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN 230 (481)
.+|+++++|||++||||+|||+ ..|.++.+|||+|++|++++...+. .++....++||.||++|++++|
T Consensus 139 ---------~v~~~~~~~ig~~IC~D~~fpe-~~r~l~~~ga~ii~~ps~~~~~~~~-~~~~~~~~arA~en~~~vv~an 207 (280)
T cd07574 139 ---------KVFDTDLGKIGILICYDSEFPE-LARALAEAGADLLLVPSCTDTRAGY-WRVRIGAQARALENQCYVVQSG 207 (280)
T ss_pred ---------eEEecCCccEEEEEecccccHH-HHHHHHHcCCCEEEECCcCCccccH-HHHHHHHHHHHHhhCceEEEeC
Confidence 5799999999999999999995 6889999999999999998765443 2344457899999999999999
Q ss_pred CccCCC---CceeeeccEEEE-eC------CcEEEeecCCCCCceeEEEEEeecchhhhhhcc
Q 011602 231 HQGCDG---GRLYFDGCSCVV-VN------GDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (481)
Q Consensus 231 ~~G~~~---~~~~f~G~S~I~-p~------G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~ 283 (481)
++|.++ ....|.|+|+|+ |+ |.++++++.++| +++++++|++.++..|..
T Consensus 208 ~~G~~~~~~~~~~~~G~S~i~~P~~~~~~~g~~l~~~~~~~e---~~~~a~iD~~~~~~~R~~ 267 (280)
T cd07574 208 TVGNAPWSPAVDVNYGQAAVYTPCDFGFPEDGILAEGEPNTE---GWLIADLDLEALRRLREE 267 (280)
T ss_pred CCCCCCCccccccccccceeecCCCCCCCCCCeEeecCCCCC---ceEEEecCHHHHHHHhhc
Confidence 999874 146788999999 85 889999877643 689999999999988875
No 35
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=2.1e-39 Score=327.97 Aligned_cols=246 Identities=20% Similarity=0.172 Sum_probs=196.1
Q ss_pred CceEEEEEeccC----CCCCHHHHHHHHHHHHHHHHHC--CCeEEEcCCCCcCCCCCCccccchhhhhHH-HHHHHHHHh
Q 011602 2 RLLKVATCNLNN----WALDFDCNLKNIKESIGRAKEA--GAVIRLGPELEITGYGCEDHFLELDTVTHA-WECLKDLLL 74 (481)
Q Consensus 2 ~~~rIAl~Q~~~----~~~d~~~N~~~i~~~i~~A~~~--gadLvvfPEl~ltGy~~~d~~~~~~~~~~~-~~~l~~la~ 74 (481)
..||||++|++. ..+|++.|++++.+++++|++. |+|||||||++++||...... ..++.... .+.++.|++
T Consensus 12 ~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~-~~~~a~~~~g~~~~~l~~ 90 (333)
T PRK13287 12 EGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWT-TEEFLCTVDGPEVDAFAQ 90 (333)
T ss_pred CceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccc-hhhhcccCCCHHHHHHHH
Confidence 469999999996 4689999999999999999864 899999999999999864321 11111111 124555666
Q ss_pred cccCCCeEEEEcceeee-CC-eeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhcc
Q 011602 75 GDWTDGILCSFGMPVIK-GS-ERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALK 151 (481)
Q Consensus 75 ~~~~~~i~iivG~~~~~-~~-~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~ 151 (481)
.++++++++++|+.++. ++ ++||++++|+ +|+++++|+|+|++ .+..+|+||+...
T Consensus 91 ~a~~~~i~~~~g~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~-----~p~~~~~pG~~~~---------------- 149 (333)
T PRK13287 91 ACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPW-----VPVEPWEPGDLGI---------------- 149 (333)
T ss_pred HHHHcCeEEEEeeEEEcCCCCceEEEEEEECCCCcEEEEEeecccC-----CccccccCCCCCC----------------
Confidence 66668999998887654 33 3999999998 69999999999973 1234577776320
Q ss_pred CceecccceeEeeC-CceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEc
Q 011602 152 QKSVPFGYGFIQFL-DTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSN 230 (481)
Q Consensus 152 ~~~vpfg~~vf~~~-g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN 230 (481)
++|++. |.|||++||||.|||+ ..|.++.+|||+|++|+++++... ..|....++||.+|+++++++|
T Consensus 150 --------~v~~~~~g~kiG~~ICyD~~fPe-~~R~~a~~GAeill~~s~~~~~~~--~~w~~~~~arA~en~~~vv~an 218 (333)
T PRK13287 150 --------PVCDGPGGSKLAVCICHDGMFPE-MAREAAYKGANVMIRISGYSTQVR--EQWILTNRSNAWQNLMYTASVN 218 (333)
T ss_pred --------ceEECCCCceEEEEEEecccchH-HHHHHHHCCCeEEEECCccCCcch--hHHHHHHHHHHHhCCcEEEEEe
Confidence 467764 6799999999999995 778999999999999999987533 3455667889999999999999
Q ss_pred CccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 231 HQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 231 ~~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
++|.+ +...|.|+|+|+ |+|+++++++.++ +++++++||++.+++.|...
T Consensus 219 ~~G~~-~~~~~~G~S~Iidp~G~vl~~~~~~~---~~ii~aeid~~~~~~~R~~~ 269 (333)
T PRK13287 219 LAGYD-GVFYYFGEGQVCNFDGTTLVQGHRNP---WEIVTAEVRPDLADEARLGW 269 (333)
T ss_pred ccccC-CCeeeeeeeEEECCCCcEEEeCCCCC---CeEEEEEEeHHHHHHHHHhc
Confidence 99988 567889999999 9999999998764 37999999999999988753
No 36
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=1.8e-39 Score=328.94 Aligned_cols=242 Identities=15% Similarity=0.148 Sum_probs=191.4
Q ss_pred ceEEEEEeccC----CCCCHHHHHHHHHHHHHHHH--HCCCeEEEcCCCCcCCCCCCc--cccchhhh-hHHHHHHHHHH
Q 011602 3 LLKVATCNLNN----WALDFDCNLKNIKESIGRAK--EAGAVIRLGPELEITGYGCED--HFLELDTV-THAWECLKDLL 73 (481)
Q Consensus 3 ~~rIAl~Q~~~----~~~d~~~N~~~i~~~i~~A~--~~gadLvvfPEl~ltGy~~~d--~~~~~~~~-~~~~~~l~~la 73 (481)
.++||++|++. ...|++.|++++.+.+++|+ ..|+|||||||++++||.... .......+ ....+.+.+++
T Consensus 12 ~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~~~~~~~a~~i~g~~~~~l~~~A 91 (345)
T PRK13286 12 TVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDRQEMYETASTIPGEETAIFAEAC 91 (345)
T ss_pred ceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcChHHHHHhcccCCCHHHHHHHHHH
Confidence 48999999983 34689999999999999887 358999999999999965322 21111111 22233445555
Q ss_pred hcccCCCeEEEEcce-ee----eCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhH
Q 011602 74 LGDWTDGILCSFGMP-VI----KGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEIS 147 (481)
Q Consensus 74 ~~~~~~~i~iivG~~-~~----~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~ 147 (481)
+ ++++++++|+. ++ .++++||++++|+ +|+++++|||+|++ .+..+|.||+..
T Consensus 92 ~---~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~-----~~~e~~~pG~~~------------- 150 (345)
T PRK13286 92 R---KAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPW-----CPIEGWYPGDCT------------- 150 (345)
T ss_pred H---HcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCC-----chhhceecCCCC-------------
Confidence 4 57888887765 33 1356999999999 79999999999975 234567888754
Q ss_pred hhccCceecccceeEeeC-CceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEE
Q 011602 148 VALKQKSVPFGYGFIQFL-DTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVY 226 (481)
Q Consensus 148 ~~~~~~~vpfg~~vf~~~-g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~v 226 (481)
.+|++. |.|||++||||.|||| ..|.++++|||+|++|++|+.. ...+|..+.++||.+|++++
T Consensus 151 ------------~v~~~~~G~kiG~lIC~D~~fPE-~~R~la~~GAelii~psa~~~~--~~~~~~~~~rarA~eN~~yV 215 (345)
T PRK13286 151 ------------YVSEGPKGLKISLIICDDGNYPE-IWRDCAMKGAELIVRCQGYMYP--AKEQQVLVAKAMAWANNCYV 215 (345)
T ss_pred ------------EEEeCCCCcEEEEEEEecccChH-HHHHHHHcCCeEEEEccccCCC--chHHHHHHHHHHHHHCCCEE
Confidence 467764 5699999999999995 7889999999999999997653 33567778899999999999
Q ss_pred EEEcCccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 227 MYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 227 v~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
++||++|.+ +...|.|+|+|+ |+|+++++++.++ +++++++||++.+++.|...
T Consensus 216 v~aN~~G~~-~~~~~~G~S~Ivdp~G~vla~~~~~~---e~ii~adld~~~i~~~R~~~ 270 (345)
T PRK13286 216 AVANAAGFD-GVYSYFGHSAIIGFDGRTLGECGEEE---MGIQYAQLSVSQIRDARRND 270 (345)
T ss_pred EEEeccccc-CCceeeeeEEEECCCCcEEEecCCCC---CeEEEEEEeHHHHHHHHHhC
Confidence 999999987 567899999999 9999999987664 37999999999999998753
No 37
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=5.6e-38 Score=309.76 Aligned_cols=223 Identities=18% Similarity=0.128 Sum_probs=184.9
Q ss_pred eEEEEEeccCCCC------CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhccc
Q 011602 4 LKVATCNLNNWAL------DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDW 77 (481)
Q Consensus 4 ~rIAl~Q~~~~~~------d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~ 77 (481)
+|||++|+++..+ |.+.|++++.+++++|+++|+|||||||++++||... .. ..+++|.+.++
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~~--------~~---~~~~~l~~~ak 69 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQR--------DP---DALARLARAAR 69 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCccccc--------CH---HHHHHHHHHHH
Confidence 5899999998876 8899999999999999999999999999999999621 11 23444554445
Q ss_pred CCCeEEEEcceeeeC--CeeEEEEEEEe-CCeEEEEeeccccCCCCCc---------------ccccceecCCCCCcccc
Q 011602 78 TDGILCSFGMPVIKG--SERYNCQVLCL-NRKIIMIRPKLWLANDGNY---------------RELRWFTAWKQKDQLED 139 (481)
Q Consensus 78 ~~~i~iivG~~~~~~--~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~---------------~E~~~f~~G~~~~~~~~ 139 (481)
++++++++|++++.+ +++||++++|+ +|+++++|+|.||++++++ .|.++|.+|+..
T Consensus 70 ~~~i~ii~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~~----- 144 (270)
T cd07571 70 AVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTGP----- 144 (270)
T ss_pred hcCCeEEEeeeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCCC-----
Confidence 689999999987655 48999999999 6889999999999987654 467788888754
Q ss_pred cccchhhHhhccCceecccceeEeeCC-ceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCC--chHHHHHHHH
Q 011602 140 FQLPNEISVALKQKSVPFGYGFIQFLD-TAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLR--KLDYRIRAFI 216 (481)
Q Consensus 140 ~~~p~~~~~~~~~~~vpfg~~vf~~~g-~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~g--k~~~~~~l~~ 216 (481)
.+|++++ +|+|++||||.+||+ ..|.++.+|||+|++|+++.|... ...+++.+.+
T Consensus 145 --------------------~vf~~~~~~r~g~~IC~D~~fpe-~~r~~~~~ga~iil~ps~~~~~~~~~~~~~~~~~~~ 203 (270)
T cd07571 145 --------------------QPLLLGGGVRVGPLICYESIFPE-LVRDAVRQGADLLVNITNDAWFGDSAGPYQHLAMAR 203 (270)
T ss_pred --------------------CccccCCCceEEEEEEeeeeChH-HHHhhcccCCCEEEEcCcccccCCCcchHHHHHHHH
Confidence 4788999 999999999999995 778999999999999998544211 2345667789
Q ss_pred HHHHHcCcEEEEEcCccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecch
Q 011602 217 SATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDA 276 (481)
Q Consensus 217 ~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~ 276 (481)
+||.||++++|+||+. |.|+|+ |+|+++++++.++ +++++++||++.
T Consensus 204 arA~en~~~vv~~n~~----------G~S~ivdp~G~ii~~~~~~~---e~~~~~~i~~~~ 251 (270)
T cd07571 204 LRAIETGRPLVRAANT----------GISAVIDPDGRIVARLPLFE---AGVLVAEVPLRT 251 (270)
T ss_pred HHHHHhCCCEEEEcCC----------eeeEEECCCCcEEeecCCCc---ceEEEEEeccCC
Confidence 9999999999999975 458899 9999999998764 378999999864
No 38
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=100.00 E-value=1.7e-36 Score=302.00 Aligned_cols=230 Identities=17% Similarity=0.179 Sum_probs=161.8
Q ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHHHHH----CCCeEEEcCCCCcCCCCCCccccchhhhhHH--HHHHHHHHhcccC
Q 011602 5 KVATCNLNNWALDFDCNLKNIKESIGRAKE----AGAVIRLGPELEITGYGCEDHFLELDTVTHA--WECLKDLLLGDWT 78 (481)
Q Consensus 5 rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~----~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~--~~~l~~la~~~~~ 78 (481)
|||++|+++..+|+++|++++.++|++|++ +|+|||||||+++|||...+......+.+.. ...++.+++.+++
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~ 80 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKK 80 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 699999999889999999999999999988 8999999999999999875432211121111 1123334444445
Q ss_pred CCeEEEEcceeeeC---CeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCce
Q 011602 79 DGILCSFGMPVIKG---SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKS 154 (481)
Q Consensus 79 ~~i~iivG~~~~~~---~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~ 154 (481)
+++++++|++++.+ +++|||+++|+ +|+++++|+|+||++. |..|+.++.... +..+.. ..++..
T Consensus 81 ~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~----~~~~~~~e~~~~-~~~~~~------~~~G~~ 149 (295)
T cd07566 81 FNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYT----DEEWGCEENPGG-FQTFPL------PFAKDD 149 (295)
T ss_pred cCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCC----CcccccCCCCCc-cccccc------cccccc
Confidence 89999999988754 48999999999 8999999999999864 233443333110 000000 000000
Q ss_pred ecccceeEeeCCceEEEEeeccCC---C--C---ChHHHHHHHCCCcEEEccCCCcccCCchH-------HH---HHHHH
Q 011602 155 VPFGYGFIQFLDTAVAAEICEELF---T--P---IPPHADLALNGVEVFMNASGSHHQLRKLD-------YR---IRAFI 216 (481)
Q Consensus 155 vpfg~~vf~~~g~riGv~IC~D~~---~--p---e~~~r~la~~Gadlil~psa~~~~~gk~~-------~~---~~l~~ 216 (481)
.+. .++...++|||+.||||+| | | .+..|.++++|||||++|++|+...+... +| ....+
T Consensus 150 ~~~--~~~~~~~~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (295)
T cd07566 150 DFD--GGSVDVTLKTSIGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYWL 227 (295)
T ss_pred ccc--ccccCCcceeEEEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHHHH
Confidence 000 1233347899999999996 7 5 14688999999999999999986543100 11 23344
Q ss_pred HHH------HHcCcEEEEEcCccCCCCceeeeccEEEE
Q 011602 217 SAT------HSRGGVYMYSNHQGCDGGRLYFDGCSCVV 248 (481)
Q Consensus 217 ~rA------~e~~~~vv~aN~~G~~~~~~~f~G~S~I~ 248 (481)
+|+ .||+++++.||++|.+ ++..|.|+|+|+
T Consensus 228 ~ra~~~~a~~eN~~~vv~~Nr~G~~-~~~~f~G~S~i~ 264 (295)
T cd07566 228 QRFEPLRAEPLEGTQVVFCNRIGTE-NDTLYAGSSAVI 264 (295)
T ss_pred HhhcccccCCCCceEEEEEeccCcc-CCceecCcccee
Confidence 555 4999999999999988 678899999987
No 39
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-36 Score=275.67 Aligned_cols=251 Identities=17% Similarity=0.110 Sum_probs=197.6
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCc-CCCCCCc-cccchhhhhHHHHHHHHHHhcccCCCe
Q 011602 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEI-TGYGCED-HFLELDTVTHAWECLKDLLLGDWTDGI 81 (481)
Q Consensus 4 ~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~l-tGy~~~d-~~~~~~~~~~~~~~l~~la~~~~~~~i 81 (481)
-+||++|+.. .+|...|++...++|++|+++||+++.|||.+- -|-.... ....... .-+.+++..+.+++++|
T Consensus 16 ~~vAv~Qm~S-~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~l---~~k~m~~y~elar~~nI 91 (295)
T KOG0807|consen 16 KRVAVAQMTS-SNDLTKNLATCKELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEPL---DGKFMEQYRELARSHNI 91 (295)
T ss_pred ceeEEEeecc-chHHHHHHHHHHHHHHHHHHcCCCEEEcchhhhhhcCCcccceeccccc---ChHHHHHHHHHHHhcCe
Confidence 5899999976 589999999999999999999999999999872 2222211 1111111 12334444444446899
Q ss_pred EEEEcce-eeeC---CeeEEEEEEEe-CCeEEEEeeccccCC-----CCCcccccceecCCCCCcccccccchhhHhhcc
Q 011602 82 LCSFGMP-VIKG---SERYNCQVLCL-NRKIIMIRPKLWLAN-----DGNYRELRWFTAWKQKDQLEDFQLPNEISVALK 151 (481)
Q Consensus 82 ~iivG~~-~~~~---~~~yNsa~vi~-~G~il~~y~K~~Lp~-----~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~ 151 (481)
++-+|.. ++.+ .++||+-++|+ .|+|+..|+|.||++ -..+.|+..-.||....
T Consensus 92 wlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~---------------- 155 (295)
T KOG0807|consen 92 WLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIE---------------- 155 (295)
T ss_pred eEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccC----------------
Confidence 9999853 3332 68999999999 999999999999954 33456666666666431
Q ss_pred CceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcC
Q 011602 152 QKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNH 231 (481)
Q Consensus 152 ~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~ 231 (481)
..++++-+|+|+.||||++||| .+..+..+||+++..|||.....|+ .+|+-++++||.|++||||.+.+
T Consensus 156 --------~pv~tP~GklGlaICYDiRFpE-~sl~LR~~gA~iLtyPSAFT~~TG~-AHWEiLlRARAietQCYVvaaaQ 225 (295)
T KOG0807|consen 156 --------SPVDTPLGKLGLAICYDIRFPE-LSLKLRKMGAQILTYPSAFTIKTGE-AHWEILLRARAIETQCYVVAAAQ 225 (295)
T ss_pred --------CccCCcccccceeeeeeccCch-HHHHHHHcCCcEEeccchhhhcccH-HHHHHHHHHHHhhcceEEEehhh
Confidence 3456777899999999999996 6778999999999999998877775 47888999999999999999999
Q ss_pred ccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcccCc
Q 011602 232 QGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISS 286 (481)
Q Consensus 232 ~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~~~ 286 (481)
+|.........|+|+|+ |+|+++++++.-+ ..++++|+||++-+...|+.+.-
T Consensus 226 ~G~HneKR~SyGhSMiVDPWGtVva~~se~~--~~~l~~AdiDlslld~lr~~mP~ 279 (295)
T KOG0807|consen 226 VGKHNEKRESYGHSMIVDPWGTVVARCSERT--GPGLILADIDLSLLDSLRTKMPL 279 (295)
T ss_pred cccccchhhccCcceEEcchhhhheecCCCC--CCceEEEEccHHHHHHHHHhCch
Confidence 99874455577999999 9999999998754 25899999999999988876543
No 40
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.98 E-value=3.8e-32 Score=262.25 Aligned_cols=251 Identities=18% Similarity=0.130 Sum_probs=204.6
Q ss_pred CceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccc-chhh------hhHHHHHHHHHHh
Q 011602 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL-ELDT------VTHAWECLKDLLL 74 (481)
Q Consensus 2 ~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~-~~~~------~~~~~~~l~~la~ 74 (481)
..+++|++|+.....+...|++....++++|+++|++||||||.+++||...+.+. -.+. .+.....++.+++
T Consensus 12 ~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~E~i~~~~~~~ps~~~ls~va~ 91 (298)
T KOG0806|consen 12 PNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTESFYPYLEDIPDPGCRDPSRQGLSEVAE 91 (298)
T ss_pred cccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccccccchhhhCCCcccCChhHHHhHHHHh
Confidence 46899999999998999999999999999999999999999999999999843222 1111 1234456777776
Q ss_pred cccCCCeEEEEcceeee--CCeeEEEEEEEe-CCeEEEEeeccccCCCC-----CcccccceecCCCCCcccccccchhh
Q 011602 75 GDWTDGILCSFGMPVIK--GSERYNCQVLCL-NRKIIMIRPKLWLANDG-----NYRELRWFTAWKQKDQLEDFQLPNEI 146 (481)
Q Consensus 75 ~~~~~~i~iivG~~~~~--~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~-----~~~E~~~f~~G~~~~~~~~~~~p~~~ 146 (481)
+ ++++++.|.++.. .++.||++.+++ +|+.++.|||.||++-. -|.|...|.+|+..
T Consensus 92 ~---~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~f------------ 156 (298)
T KOG0806|consen 92 R---LSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQF------------ 156 (298)
T ss_pred h---ceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcCC------------
Confidence 5 8999999976654 479999999999 99999999999998642 26788889988865
Q ss_pred HhhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCc---ccCCchHHHHHHHHHHHHHcC
Q 011602 147 SVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSH---HQLRKLDYRIRAFISATHSRG 223 (481)
Q Consensus 147 ~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~---~~~gk~~~~~~l~~~rA~e~~ 223 (481)
.+++...+|||+.||||+|||+ +++.+++.|||+|+.|++|. -..+ ..+|..+.++|+..|.
T Consensus 157 -------------~~~~~~~gkfGi~IC~Di~F~d-~A~~~~~~g~~~ivyPtaw~~~~l~~~-~~hw~~~~~~~a~~n~ 221 (298)
T KOG0806|consen 157 -------------TVVDTSYGKFGIFICFDIRFYD-PAMILVKDGADLIVYPTAWNNELLSAV-PLHWALLMRARANDNA 221 (298)
T ss_pred -------------CcccCCCCceEEEEEecccccc-hHHHHHHcCCcEEEecchHhhhccccc-chHHHHHHhCCcccce
Confidence 2455666999999999999996 78899999999999999997 2233 2466667888999999
Q ss_pred cEEEEEcCccCCCCceeeec-cEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcccCc
Q 011602 224 GVYMYSNHQGCDGGRLYFDG-CSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISS 286 (481)
Q Consensus 224 ~~vv~aN~~G~~~~~~~f~G-~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~~~ 286 (481)
.+++.+|..+...+.+...| +|.+. |.|++|+..... ++++++++|++.+...|+....
T Consensus 222 ~~v~~~s~~~~~s~~y~~~gshs~~~~p~gkvl~a~~~~----~e~~~a~~d~~~~~~~rq~~~~ 282 (298)
T KOG0806|consen 222 ANVHAPSPARTGSGIYAPRGSHSIMVNPTGKVLAAAVEK----EEIIYADVDPSAIASRRQGLPV 282 (298)
T ss_pred eeeeccCcCcCCceeeecCCcceeecCCcceEeeeccCC----CccccccCCHHHHHHHhcccch
Confidence 99999999876656677777 99999 999999987653 3589999999999888875433
No 41
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=99.97 E-value=3.3e-31 Score=246.50 Aligned_cols=176 Identities=28% Similarity=0.318 Sum_probs=138.5
Q ss_pred EEEEEeccC--CCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCC----Cccccch-hhhhHH-HHHHHHHHhcc
Q 011602 5 KVATCNLNN--WALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGC----EDHFLEL-DTVTHA-WECLKDLLLGD 76 (481)
Q Consensus 5 rIAl~Q~~~--~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~----~d~~~~~-~~~~~~-~~~l~~la~~~ 76 (481)
|||++|+++ ..+|.++|++++.+++++|+++|+|||||||++++||+. .+..... .+.... ...++.+.+.+
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 80 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELA 80 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHH
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHH
Confidence 899999997 789999999999999999999999999999999999943 2211111 111110 12344444444
Q ss_pred cCCCeEEEEcceeeeCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcc-cccceecCCCCCcccccccchhhHhhccCce
Q 011602 77 WTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYR-ELRWFTAWKQKDQLEDFQLPNEISVALKQKS 154 (481)
Q Consensus 77 ~~~~i~iivG~~~~~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~-E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~ 154 (481)
+++++++++|+++..++++||++++|+ +|++++.|+|.||+++++|. |++||.+|....
T Consensus 81 ~~~~~~i~~G~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~------------------- 141 (186)
T PF00795_consen 81 KENGITIVAGIPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPF------------------- 141 (186)
T ss_dssp HHHTSEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSES-------------------
T ss_pred HhcCCcccccccccccccccceeEEEEeeecccccccceeeeccccccccceeeeecccee-------------------
Confidence 458999999999999999999999999 79999999999999999999 899999984320
Q ss_pred ecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCC
Q 011602 155 VPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASG 200 (481)
Q Consensus 155 vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa 200 (481)
..|..++++++|+|||++||||.|||+ ..+.++.+|||+|++|||
T Consensus 142 ~~~~~~~~~~~g~~ig~~ICyd~~fp~-~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 142 PVFETPVFDFGGGRIGVLICYDLRFPE-LVRELAKQGADILINPSA 186 (186)
T ss_dssp EEEEETETEETTEEEEEEEGGGGGSHH-HHHHHHHTTESEEEEEE-
T ss_pred eeeecceeeeccceEEEEEEcccCChH-HHHHHHHCCCCEEEeCCC
Confidence 011113467789999999999999995 677899999999999986
No 42
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=99.97 E-value=8.8e-30 Score=272.51 Aligned_cols=224 Identities=20% Similarity=0.129 Sum_probs=174.2
Q ss_pred ceEEEEEeccCCC------CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcc
Q 011602 3 LLKVATCNLNNWA------LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGD 76 (481)
Q Consensus 3 ~~rIAl~Q~~~~~------~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~ 76 (481)
.+|||++|+|+.. ++.+.|++++.+++++ +++|+|||||||+++++|. .+. .+...+.+.++++
T Consensus 219 ~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~-~~~~~dlvV~PE~a~p~~~-~~~------~~~~~~~l~~~a~-- 288 (505)
T PRK00302 219 ALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRP-ALGPADLIIWPETAIPFLL-EDL------PQAFLKALDDLAR-- 288 (505)
T ss_pred CcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhc-ccCCCCEEEeCCccccccc-ccc------cHHHHHHHHHHHH--
Confidence 5899999999876 5678899999999884 4579999999999998773 111 1122234555554
Q ss_pred cCCCeEEEEcceeeeC---C-eeEEEEEEEeCCeEEEEeeccccCCCCCccccc---------------ceecCCCCCcc
Q 011602 77 WTDGILCSFGMPVIKG---S-ERYNCQVLCLNRKIIMIRPKLWLANDGNYRELR---------------WFTAWKQKDQL 137 (481)
Q Consensus 77 ~~~~i~iivG~~~~~~---~-~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~---------------~f~~G~~~~~~ 137 (481)
++++.+++|.++..+ + ++||+++++++|+++++|+|+||.+++||-+.+ +|++|+..
T Consensus 289 -~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~~~--- 364 (505)
T PRK00302 289 -EKGSALITGAPRAENKQGRYDYYNSIYVLGPYGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGPYV--- 364 (505)
T ss_pred -hCCCEEEEecccccCCCCCCceeeEEEEECCCCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCCCC---
Confidence 489999999876542 3 699999999999999999999999888753211 34444411
Q ss_pred cccccchhhHhhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccC-Cc-hHHHHHHH
Q 011602 138 EDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQL-RK-LDYRIRAF 215 (481)
Q Consensus 138 ~~~~~p~~~~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~-gk-~~~~~~l~ 215 (481)
..++++++.|+|++||||.+||+ ..|.++.+|||+|++|+++.|.. .. ..++..+.
T Consensus 365 ---------------------~~v~~~~~~~ig~~ICyE~~fpe-~~r~~~~~ga~~lv~~snd~Wf~~~~~~~qh~~~~ 422 (505)
T PRK00302 365 ---------------------QPPLLAKGLKLAPLICYEIIFPE-EVRANVRQGADLLLNISNDAWFGDSIGPYQHFQMA 422 (505)
T ss_pred ---------------------CCCcccCCceEEEEEeehhcChH-HHHhhccCCCCEEEEccchhhcCCCCchHHHHHHH
Confidence 14688899999999999999995 67788899999999999965421 11 33667788
Q ss_pred HHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecc
Q 011602 216 ISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLD 275 (481)
Q Consensus 216 ~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~ 275 (481)
+.||.||+++++.+|+. |.|.|+ |+|+++++.+.++ ++++++++|+.
T Consensus 423 ~~RAiEng~~vvra~n~----------G~Saiidp~G~i~~~~~~~~---~~~l~~~i~~~ 470 (505)
T PRK00302 423 RMRALELGRPLIRATNT----------GITAVIDPLGRIIAQLPQFT---EGVLDGTVPPT 470 (505)
T ss_pred HHHHHHhCCceEEecCc----------eeeEEECCCCCEeeecCCCc---eeEEEEEeccC
Confidence 99999999999999875 457888 9999999998775 37889998863
No 43
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=99.97 E-value=5.1e-30 Score=266.08 Aligned_cols=204 Identities=20% Similarity=0.134 Sum_probs=162.1
Q ss_pred ceEEEEEeccCCCC------CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcc
Q 011602 3 LLKVATCNLNNWAL------DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGD 76 (481)
Q Consensus 3 ~~rIAl~Q~~~~~~------d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~ 76 (481)
.+|||++|+|+... +.+.|++++.+++++|++ ++|||||||+++++|...+. +...+.++++++
T Consensus 159 ~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~~-------~~~~~~l~~~a~-- 228 (391)
T TIGR00546 159 TLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENSP-------QKLADRLKLLVL-- 228 (391)
T ss_pred cceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhCc-------HHHHHHHHHHHH--
Confidence 58999999998764 468899999999998876 89999999999999854221 112334555554
Q ss_pred cCCCeEEEEcceeeeCC---eeEEEEEEEe-CCeEEEEeeccccCCCCCcccc----------------cceecCCCCCc
Q 011602 77 WTDGILCSFGMPVIKGS---ERYNCQVLCL-NRKIIMIRPKLWLANDGNYREL----------------RWFTAWKQKDQ 136 (481)
Q Consensus 77 ~~~~i~iivG~~~~~~~---~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~----------------~~f~~G~~~~~ 136 (481)
++++.+++|.+...++ ++||++++++ +|+++++|+|+||.+++||-+- .+|++|+..
T Consensus 229 -~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~~~-- 305 (391)
T TIGR00546 229 -SKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGPGP-- 305 (391)
T ss_pred -hCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCCCC--
Confidence 5899999998765433 7999999998 7999999999999988876431 244455432
Q ss_pred ccccccchhhHhhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCc--hHHHHHH
Q 011602 137 LEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRK--LDYRIRA 214 (481)
Q Consensus 137 ~~~~~~p~~~~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk--~~~~~~l 214 (481)
.+|+++++|+|++||||.+||+ ..|.++.+|||+|++|++++|...+ ..++..+
T Consensus 306 -----------------------~~~~~~~~~~g~~ICyE~~fp~-~~r~~~~~Ga~~lv~~snd~wf~~s~~~~qh~~~ 361 (391)
T TIGR00546 306 -----------------------QVLKLPGGKIAPLICYESIFPD-LVRASARQGAELLVNLTNDAWFGDSSGPWQHFAL 361 (391)
T ss_pred -----------------------CCCcCCCceeeeeEEeehhchH-HHHhhccCCCCEEEEecchhhcCCCCChHHHHHH
Confidence 4678888999999999999996 6778899999999999998763322 3466788
Q ss_pred HHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-eCCcE
Q 011602 215 FISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDM 253 (481)
Q Consensus 215 ~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~i 253 (481)
.+.||.||+++++.+|+.| .|.|+ |+|++
T Consensus 362 ~~~RAiEn~~~vvra~n~G----------~S~vidp~G~i 391 (391)
T TIGR00546 362 ARFRAIENGRPLVRATNTG----------ISAVIDPRGRT 391 (391)
T ss_pred HHHHHHHhCCcEEEecCCc----------eeEEECCCCCC
Confidence 8999999999999999875 46888 99975
No 44
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.96 E-value=2.4e-28 Score=225.52 Aligned_cols=247 Identities=16% Similarity=0.141 Sum_probs=201.7
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccc----------chhhhhH---HH-
Q 011602 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL----------ELDTVTH---AW- 66 (481)
Q Consensus 1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~----------~~~~~~~---~~- 66 (481)
|.+.||+++|.....+|..+.++++++++.+|++.||+||||||.++.||+-+..|. +.+|... +.
T Consensus 15 ~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AIe 94 (337)
T KOG0805|consen 15 SSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAIE 94 (337)
T ss_pred ccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhhc
Confidence 456899999999999999999999999999999999999999999999999765432 1233221 11
Q ss_pred ---HHHHHHHhcccCCCeEEEEcceeeeCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCccccccc
Q 011602 67 ---ECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQL 142 (481)
Q Consensus 67 ---~~l~~la~~~~~~~i~iivG~~~~~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~ 142 (481)
..+++|+..++++++++++|..++++-.+|.++++++ .|..+++|||. +|+. -|+-.|..|+...
T Consensus 95 v~gpEv~~l~~la~~~~v~lv~G~iEreg~TLYCt~~f~~p~g~~lGKHRKl-mPTa---lERciWGqGDGST------- 163 (337)
T KOG0805|consen 95 VPGPEVERLAELAKKNNVYLVMGAIEREGYTLYCTVLFFSPQGQFLGKHRKL-MPTA---LERCIWGQGDGST------- 163 (337)
T ss_pred CCChHHHHHHHHhhcCCeEEEEEEEeccccEEEEEEEEECCCcccccccccc-ccch---hhheeeccCCCcc-------
Confidence 2466777777789999999999999999999999999 89999999998 6765 4666677777552
Q ss_pred chhhHhhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHc
Q 011602 143 PNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSR 222 (481)
Q Consensus 143 p~~~~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~ 222 (481)
+ +||++.-+|||-.|||+.+.| ..+-.+..+|.++.+.|++.. ...|..-++..|.|-
T Consensus 164 ------------i----PV~dT~iGKIG~AICWEN~MP-l~R~alY~KgieIycAPT~D~-----r~~w~~sM~~IAlEG 221 (337)
T KOG0805|consen 164 ------------I----PVYDTPIGKIGAAICWENRMP-LYRTALYAKGIEIYCAPTADG-----RKEWQSSMLHIALEG 221 (337)
T ss_pred ------------c----ceeecccchhceeeecccccH-HHHHHHHhcCcEEEeccCCCC-----cHHHHHhhhheeecC
Confidence 1 689999999999999999999 455567889999999999863 256777888999999
Q ss_pred CcEEEEEcCccCC-------------------CCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhc
Q 011602 223 GGVYMYSNHQGCD-------------------GGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (481)
Q Consensus 223 ~~~vv~aN~~G~~-------------------~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~ 282 (481)
+|+++.+++.-.. .+..+..|+|.|+ |-|++++. |.|+. ++++++++|+..+.++|-
T Consensus 222 ~cFvlSA~QF~k~~d~p~~peyl~~~~~~~k~pD~vv~~GGSviI~PlG~Vlag-P~~~~--EgL~tadldl~dIA~ak~ 298 (337)
T KOG0805|consen 222 GCFVLSACQFCKRKDFPDHPDYLFTDWYDDKEPDSVVSQGGSVIISPLGQVLAG-PNFES--EGLITADLDLGDIARAKL 298 (337)
T ss_pred ceEEEEhhhhcccccCCCCchhhcccchhccCCCcceecCCcEEEccccceecC-CCcCc--cceEEEeccchhhhhhcc
Confidence 9999999985211 1345678999999 99999987 55653 589999999999987665
Q ss_pred c
Q 011602 283 S 283 (481)
Q Consensus 283 ~ 283 (481)
.
T Consensus 299 d 299 (337)
T KOG0805|consen 299 D 299 (337)
T ss_pred c
Confidence 3
No 45
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.93 E-value=5.5e-25 Score=228.92 Aligned_cols=188 Identities=12% Similarity=0.017 Sum_probs=145.8
Q ss_pred eEEEEEeccCCCCC------HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhccc
Q 011602 4 LKVATCNLNNWALD------FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDW 77 (481)
Q Consensus 4 ~rIAl~Q~~~~~~d------~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~ 77 (481)
.+|+++|.|..+.. .+.|+++..+++++|++.++|||||||+++++|...+ ...++++++.+
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~~-----------~~~~~~l~~~~- 262 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNNS-----------PILLDKLKELS- 262 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhhC-----------HHHHHHHHHhc-
Confidence 48999999975432 3678999999999998889999999999987653211 12344455443
Q ss_pred CCCeEEEEcceeeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcc----------------cccceecCCCCCcccccc
Q 011602 78 TDGILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYR----------------ELRWFTAWKQKDQLEDFQ 141 (481)
Q Consensus 78 ~~~i~iivG~~~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~----------------E~~~f~~G~~~~~~~~~~ 141 (481)
.++.+++|.+..+++++|||++++++|+ ++.|+|+||.++|||- |..+|++|+..
T Consensus 263 -~~~~ii~G~~~~~~~~~yNS~~vi~~G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~~------- 333 (418)
T PRK12291 263 -HKITIITGALRVEDGHIYNSTYIFSKGN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASKF------- 333 (418)
T ss_pred -cCCcEEEeeeeccCCceEEEEEEECCCC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCCC-------
Confidence 4788999988776678999999999887 7899999999888743 33345555432
Q ss_pred cchhhHhhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCch--HHHHHHHHHHH
Q 011602 142 LPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKL--DYRIRAFISAT 219 (481)
Q Consensus 142 ~p~~~~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~--~~~~~l~~~rA 219 (481)
.++++++.|+|++||||.+||+. .| +|||+++++|++.|-.+.. .++..+++.||
T Consensus 334 ------------------~~~~~~g~~ig~lICYE~~Fpel-~r----~ga~~Lv~iSNdaWfg~s~~p~~~~~~~r~RA 390 (418)
T PRK12291 334 ------------------SDFTLDGVKFRNAICYEATSEEL-YE----GNPKIVIAISNNAWFVPSIEPTLQKLLLKYYA 390 (418)
T ss_pred ------------------cceeeCCeEEEEEEeeeecchHh-hc----cCCCEEEEecccccCCCChhHHHHHHHHHHHH
Confidence 46788999999999999999963 33 8999999999988733322 35567788899
Q ss_pred HHcCcEEEEEcCccCC
Q 011602 220 HSRGGVYMYSNHQGCD 235 (481)
Q Consensus 220 ~e~~~~vv~aN~~G~~ 235 (481)
.|++.+++.+.+.|.+
T Consensus 391 iE~g~pvvratNtGiS 406 (418)
T PRK12291 391 RKYGKTIYHSANGSPS 406 (418)
T ss_pred HHhCCcEEEEcCCcee
Confidence 9999999999988764
No 46
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.92 E-value=6.5e-24 Score=197.48 Aligned_cols=248 Identities=17% Similarity=0.155 Sum_probs=188.3
Q ss_pred CceEEEEEeccCC---CC----CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCC--Cccccchhhh-----hHHHH
Q 011602 2 RLLKVATCNLNNW---AL----DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGC--EDHFLELDTV-----THAWE 67 (481)
Q Consensus 2 ~~~rIAl~Q~~~~---~~----d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~--~d~~~~~~~~-----~~~~~ 67 (481)
+.+||+++|-.+. .. ...+--+|+...|+.|+..|+.+++|.|.+...|.. .+.+.--+|. ....+
T Consensus 72 r~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~ 151 (387)
T KOG0808|consen 72 RVVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTK 151 (387)
T ss_pred cEEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHH
Confidence 3589999997642 12 234556678888999999999999999998766542 1111111222 23456
Q ss_pred HHHHHHhcccCCCeEEEEcceee---eCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccc
Q 011602 68 CLKDLLLGDWTDGILCSFGMPVI---KGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLP 143 (481)
Q Consensus 68 ~l~~la~~~~~~~i~iivG~~~~---~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p 143 (481)
.+++||+. +++.++-...++ +++.++|++++|. +|.++|++||.|+|..|.|.|+.|+-.|+..
T Consensus 152 flqklakk---hdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lg--------- 219 (387)
T KOG0808|consen 152 FLQKLAKK---HDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLG--------- 219 (387)
T ss_pred HHHHHHhh---CCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCC---------
Confidence 78888874 898877666665 3568999999998 9999999999999999999999999887643
Q ss_pred hhhHhhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcC
Q 011602 144 NEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRG 223 (481)
Q Consensus 144 ~~~~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~ 223 (481)
++||++..+|||+-|||--.+|. -+-++.++||++|+|||+.--.... ..|---.+..|+.|.
T Consensus 220 ---------------hpvfet~fgriavnicygrhhpl-nwlmy~lngaeiifnpsatvgalse-plwpiearnaaianh 282 (387)
T KOG0808|consen 220 ---------------HPVFETVFGRIAVNICYGRHHPL-NWLMYGLNGAEIIFNPSATVGALSE-PLWPIEARNAAIANH 282 (387)
T ss_pred ---------------CceeeeecceEEEEeeccCCCch-hhhhhhccCceEEECCccccccccC-ccCchhhhhhhhhhc
Confidence 47999999999999999999995 4558899999999999986322211 122233566788999
Q ss_pred cEEEEEcCccCC--------CC------c-eeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhh
Q 011602 224 GVYMYSNHQGCD--------GG------R-LYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFR 281 (481)
Q Consensus 224 ~~vv~aN~~G~~--------~~------~-~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R 281 (481)
++.+..|++|.+ |+ + -.|.|+|.+. ||+...-..++.. ++++++++||..++..+
T Consensus 283 ~ft~~inrvgtevfpneftsgdgkpah~dfghfygssy~aapd~srtp~lsr~r---dgllia~ldlnlcrq~k 353 (387)
T KOG0808|consen 283 YFTGSINRVGTEVFPNEFTSGDGKPAHNDFGHFYGSSYFAAPDASRTPSLSRYR---DGLLIADLDLNLCRQYK 353 (387)
T ss_pred eEEEeecccccccCCCcccCCCCCcccccccccccceeeecCCCCCCccccccc---cceEEeecchHHHHHhh
Confidence 999999999965 11 1 3588999999 9998776666664 48999999999887654
No 47
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=6e-20 Score=194.88 Aligned_cols=231 Identities=19% Similarity=0.147 Sum_probs=153.7
Q ss_pred ceEEEEEeccCCC---CCHHHHHHHH-HHHHHHH---H--HCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHH
Q 011602 3 LLKVATCNLNNWA---LDFDCNLKNI-KESIGRA---K--EAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLL 73 (481)
Q Consensus 3 ~~rIAl~Q~~~~~---~d~~~N~~~i-~~~i~~A---~--~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la 73 (481)
.++|+++|.|+.+ .|.++ .++. ...+.+. . .+++|+||+||.+++ +...+. . +.+.++.
T Consensus 227 ~~~V~lvQ~nI~q~lk~~~~~-~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p-~~~~~~------~----~~~~~~~ 294 (518)
T COG0815 227 TLTVALVQGNIPQDLKWDADA-LARLIAGYLEEEFLAAVDKQKPDLVVWPETALP-FDLTRH------P----DALARLA 294 (518)
T ss_pred ceEEEEecCCCcccccCCHHH-HHHHHHhhhhccccccccCCCCCEEEccccccc-cchhhc------c----hHHHHHH
Confidence 4899999999752 23332 3322 2222222 2 378999999999987 222111 1 1122233
Q ss_pred hcccCCCeEEEEcceee--eCCe--eEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHh
Q 011602 74 LGDWTDGILCSFGMPVI--KGSE--RYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISV 148 (481)
Q Consensus 74 ~~~~~~~i~iivG~~~~--~~~~--~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~ 148 (481)
+...+.++.+++|.... .+++ +|||+++++ +|+++.+|+|.||.++|||-+-..+-+.-.. .+.++
T Consensus 295 ~~~~~~~~~~iiG~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~----~~~~~----- 365 (518)
T COG0815 295 EALQRVGAPLLIGTDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYF----FLNLP----- 365 (518)
T ss_pred HHHHhcCCcEEEeccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhh----hhccc-----
Confidence 33334678899994332 2444 899999999 5599999999999999987654332211100 01000
Q ss_pred hccCceecc--c--ceeEee-CCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCc--hHHHHHHHHHHHHH
Q 011602 149 ALKQKSVPF--G--YGFIQF-LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRK--LDYRIRAFISATHS 221 (481)
Q Consensus 149 ~~~~~~vpf--g--~~vf~~-~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk--~~~~~~l~~~rA~e 221 (481)
..+| | ..++.+ ++.|++..||||.-||+ ..|....+|||+|+|+|++.|-... ..++..+.+.||.|
T Consensus 366 -----~~~f~~G~~~~v~~~~~~~~~~~~ICYE~~F~~-~~r~~~~qga~~Lin~SNDAWf~~s~~p~QH~~~a~~RAiE 439 (518)
T COG0815 366 -----MSDFSRGPGPQVLLLAGGPKIAPLICYEAIFPE-LVRASARQGAELLLNLSNDAWFGGSWGPYQHFQQARVRAVE 439 (518)
T ss_pred -----cccccCCCCCcceecCCCceeeceeeehhhchH-HHHHhhcCCCcEEEEcccccccCCCcchHHHHHHHHHHHHh
Confidence 1112 1 134454 45679999999999995 6778899999999999998873221 23566778999999
Q ss_pred cCcEEEEEcCccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEee
Q 011602 222 RGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVD 273 (481)
Q Consensus 222 ~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vD 273 (481)
++.+++.+.+.|.+ .|+ |+|+++++.+.|+. +++.++|-
T Consensus 440 ~grp~iRAtNtGiS----------avIdp~Gri~~~l~~~~~---~~l~~~v~ 479 (518)
T COG0815 440 LGRPLVRATNTGIS----------AVIDPRGRILAQLPYFTR---GVLDATVP 479 (518)
T ss_pred cCCcEEEEcCCcce----------EEECCCCCEEeecCCCCc---ceeeeeec
Confidence 99999999988764 677 99999999999864 45555553
No 48
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.83 E-value=7e-20 Score=188.22 Aligned_cols=171 Identities=12% Similarity=0.017 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEEEcceeeeCCeeEEEEEE
Q 011602 22 LKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVL 101 (481)
Q Consensus 22 ~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iivG~~~~~~~~~yNsa~v 101 (481)
.+++.+.+++|+++|+|+|||||+++++|.... +. .+.+.+ +++++.+++|..+++++++||++++
T Consensus 208 ~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~----~~-------~~~~~l---~~~~i~II~G~~~~~~~~~yNsa~v 273 (388)
T PRK13825 208 RRELIATVRAAAAAGARVVVLPESALGFWTPTT----ER-------LWRESL---RGSDVTVIAGAAVVDPGGYDNVLVA 273 (388)
T ss_pred HHHHHHHHHhhcccCCCEEEccCcccccccccc----cH-------HHHHHH---HhCCCeEEEEeeecCCCCceEEEEE
Confidence 335566777788889999999999999985421 00 012222 3478999999888777889999999
Q ss_pred EeCCeEEEEeeccccCCCCCcc-------cccceecCCCCCcccccccchhhHhhccCceecccceeEeeCCceEEEEee
Q 011602 102 CLNRKIIMIRPKLWLANDGNYR-------ELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEIC 174 (481)
Q Consensus 102 i~~G~il~~y~K~~Lp~~~~~~-------E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~vf~~~g~riGv~IC 174 (481)
+++++....|+|+||.++++|. |..+|.+|.. ++++|++++.|+|++||
T Consensus 274 ~~~~G~~~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~------------------------~~~vf~l~g~rvg~lIC 329 (388)
T PRK13825 274 ISAGGGRILYRERMPVPVSMWQPWRPWTGQGGGARAHFF------------------------ANPVVEIDGRRAAPLIC 329 (388)
T ss_pred EeCCCCeeeEeeeeCcCccccCchHHhhccccCCCCCCC------------------------CCCceeeCCeEEEEEEe
Confidence 9954345599999997776543 3333333311 22578899999999999
Q ss_pred ccCCCCChHHHHHHHCCCcEEEccCCCcccCCch--HHHHHHHHHHHHHcCcEEEEEcC
Q 011602 175 EELFTPIPPHADLALNGVEVFMNASGSHHQLRKL--DYRIRAFISATHSRGGVYMYSNH 231 (481)
Q Consensus 175 ~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~--~~~~~l~~~rA~e~~~~vv~aN~ 231 (481)
||.+|+.... ....+|+|+|++|++..|..+.. .+++.+.+.||+|++.++|.+.+
T Consensus 330 YE~~F~~pel-~~~~~GadlLv~~SNd~Wf~~s~~p~~q~~~~~~rA~e~g~plvrA~N 387 (388)
T PRK13825 330 YEQLLVWPVL-QSMLHSPDVIVAVGNGWWTKGTSIVAIQRASAEAWARLFGVPLVRAFN 387 (388)
T ss_pred eeecCcHHHH-HhhccCCCEEEEecCchhcCCCcHHHHHHHHHHHHHHHhCCCEEEecC
Confidence 9999853222 23379999999999987754433 35567889999999999997654
No 49
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=99.75 E-value=5.2e-18 Score=164.11 Aligned_cols=95 Identities=36% Similarity=0.483 Sum_probs=87.5
Q ss_pred hccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcc
Q 011602 332 AFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKR 411 (481)
Q Consensus 332 ~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (481)
+++++.||++|++++|+++++||||||+|||++|+|+ ++++| +++
T Consensus 2 ~~~l~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La-------~~Alg--~~~-------------------------- 46 (242)
T PF02540_consen 2 IEALVDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALA-------VKALG--PDN-------------------------- 46 (242)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHH-------HHHHG--GGE--------------------------
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHH-------HHHhh--hcc--------------------------
Confidence 5678999999999999999999999999999999999 78886 555
Q ss_pred eEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHhh
Q 011602 412 IFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT 462 (481)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~ 462 (481)
++|++||+.++++.+.++|+++|+.||++|.++||+++++++.+.++...
T Consensus 47 -v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~~~~~~ 96 (242)
T PF02540_consen 47 -VLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDIDPIFDAFLKSLEPAD 96 (242)
T ss_dssp -EEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESHHHHHHHHHHHHHHH
T ss_pred -ccccccccccCChHHHHHHHHHHHHhCCCeeccchHHHHHHHhhhhccch
Confidence 68999999999999999999999999999999999999999998776543
No 50
>PTZ00323 NAD+ synthase; Provisional
Probab=99.65 E-value=1e-15 Score=151.37 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=88.4
Q ss_pred HHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhh
Q 011602 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (481)
Q Consensus 329 ~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~ 408 (481)
+++.+....+|++||+++|.++++||||||+|||++|+|+ .+++| .++ .
T Consensus 27 ~~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa-------~~alg--~~~----------------------~ 75 (294)
T PTZ00323 27 AAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALC-------ARAMR--MPN----------------------S 75 (294)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH-------HHHhc--ccc----------------------C
Confidence 5677778999999999999999999999999999999999 67776 211 1
Q ss_pred hcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHhhC
Q 011602 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG 463 (481)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~ 463 (481)
|...+++++||+ +|++.+.++|+++|+.+|++|+++||+++++++...++..++
T Consensus 76 ~~~~~~~v~~P~-~ss~~~~~~A~~la~~lGi~~~~idi~~l~~~~~~~i~~~~~ 129 (294)
T PTZ00323 76 PIQKNVGLCQPI-HSSAWALNRGRENIQACGATEVTVDQTEIHTQLSSLVEKAVG 129 (294)
T ss_pred CceEEEEEECCC-CCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHhhhhc
Confidence 112368999996 688899999999999999999999999999999988887664
No 51
>PRK00768 nadE NAD synthetase; Reviewed
Probab=99.63 E-value=1.4e-15 Score=147.91 Aligned_cols=102 Identities=25% Similarity=0.234 Sum_probs=80.9
Q ss_pred HHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHh-cCchhHHHHHHHhccCCCCCCCCChHh
Q 011602 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIS-NGDEQVKADAIRIGHYANGEFPTDSRE 407 (481)
Q Consensus 329 ~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~~~~~~~~ 407 (481)
++....++.||+||++++|++|++||||||+|||++|+|+ .++++ .+.++ +
T Consensus 19 ~~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~-------~~A~~~~~~~~---------~------------ 70 (268)
T PRK00768 19 EEEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLA-------QLAVEELRAET---------G------------ 70 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHH-------HHHHHHhcccc---------c------------
Confidence 4555668899999999999999999999999999999988 45554 11111 0
Q ss_pred hhcceEEEEecCCCCCcHHhHHHHHHHHHHhCC-ceEEeehHHHHHHHHHHHHH
Q 011602 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLSLFQT 460 (481)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~-~~~~i~i~~~~~~~~~~~~~ 460 (481)
.....++++.||. +++.+.++|+++|+.||+ +|.++||+++++++.+.++.
T Consensus 71 ~~~~~~~~l~mP~--~~~~~~~da~~la~~lgi~~~~~i~I~~~~~~~~~~l~~ 122 (268)
T PRK00768 71 DDDYQFIAVRLPY--GVQADEDDAQDALAFIQPDRVLTVNIKPAVDASVAALEA 122 (268)
T ss_pred CcceeEEEEECCC--CCcCCHHHHHHHHHhcCCCeeEEEECHHHHHHHHHHHhh
Confidence 0001257899996 445689999999999999 89999999999999988764
No 52
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=99.60 E-value=4.9e-15 Score=143.93 Aligned_cols=103 Identities=31% Similarity=0.393 Sum_probs=87.2
Q ss_pred hHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHh
Q 011602 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (481)
Q Consensus 328 ~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 407 (481)
.++.+++++.||++|++++|++|+|||||||+|||++++|+ ++|++++... .
T Consensus 5 ~~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La-------~~A~~~~~~~--------------------~- 56 (268)
T COG0171 5 LEEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALA-------VRALGKGDSK--------------------E- 56 (268)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHH-------HHHhccccch--------------------h-
Confidence 46888899999999999999999999999999999999999 7888631111 1
Q ss_pred hhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHhh
Q 011602 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT 462 (481)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~ 462 (481)
.+.++.||+.+.++.+.++|+.+++.+|+++.++||.+++++|...+...+
T Consensus 57 ----~~~av~mP~~~~~~~~~~da~~~~~~lg~~~~~i~I~~~v~~~~~~~~~~~ 107 (268)
T COG0171 57 ----NVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINIKPAVDAFLKKLLKLF 107 (268)
T ss_pred ----heeeEECCCCCccccCHHHHHHHHHHhCCceEEEecHHHHHHHHHhhhhhh
Confidence 268999998754788999999999999999999999999999855444433
No 53
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.56 E-value=2.3e-14 Score=139.76 Aligned_cols=97 Identities=45% Similarity=0.630 Sum_probs=86.5
Q ss_pred hHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHh
Q 011602 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (481)
Q Consensus 328 ~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 407 (481)
.++++++++.||++|++++|.++++||||||+||+++|+++ .++++ ..+
T Consensus 3 ~~~~~~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la-------~~~~~--~~~---------------------- 51 (248)
T cd00553 3 LEEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALA-------VRALG--REN---------------------- 51 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHH-------HHHhC--ccc----------------------
Confidence 36889999999999999999999999999999999999999 56653 233
Q ss_pred hhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHH
Q 011602 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQT 460 (481)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~ 460 (481)
+++++||+..+++.+.++|+++|+.+|++|+++++++.++.+...+..
T Consensus 52 -----v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~~~ 99 (248)
T cd00553 52 -----VLALFMPSRYSSEETREDAKELAEALGIEHVNIDIDPAVEAFLALLGE 99 (248)
T ss_pred -----EEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEeccHHHHHHHHHHHhh
Confidence 689999998888889999999999999999999999999998877654
No 54
>PRK13980 NAD synthetase; Provisional
Probab=99.50 E-value=1e-13 Score=136.37 Aligned_cols=96 Identities=29% Similarity=0.365 Sum_probs=84.8
Q ss_pred hHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHh
Q 011602 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (481)
Q Consensus 328 ~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 407 (481)
.+++.+.+..||++|++++|+++++||||||+||+++|+++ .++++ ..+
T Consensus 10 ~~~~~~~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~-------~~~~~--~~~---------------------- 58 (265)
T PRK13980 10 YEKVREIIVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLA-------VKALG--KEN---------------------- 58 (265)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH-------HHHhC--ccc----------------------
Confidence 46788899999999999999999999999999999999988 56654 233
Q ss_pred hhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHH
Q 011602 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQ 459 (481)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~ 459 (481)
+++++||+.++++.+.++|+.+|+.+|++|++++|+++++.+...+.
T Consensus 59 -----v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~i~~~~~~~~~~~~ 105 (265)
T PRK13980 59 -----VLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIEITPIVDAFFSAIP 105 (265)
T ss_pred -----eEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEECHHHHHHHHHHcc
Confidence 68999998888888999999999999999999999999998876553
No 55
>PRK00876 nadE NAD synthetase; Reviewed
Probab=99.34 E-value=3.9e-12 Score=127.63 Aligned_cols=91 Identities=27% Similarity=0.349 Sum_probs=80.1
Q ss_pred HHHhccccchHHHHHHH-cCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHh
Q 011602 329 EEIAFGPGCWLWDYLRR-SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (481)
Q Consensus 329 ~~~~~~~~~~l~~~l~~-~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 407 (481)
++....+..+|++++++ .++++++++||||+|||++|+++ .++++ .++
T Consensus 13 ~~~~e~i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa-------~~a~g--~~~---------------------- 61 (326)
T PRK00876 13 AAEAERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALC-------VRALG--KER---------------------- 61 (326)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHH-------HHhhC--CCc----------------------
Confidence 45666788899999999 89999999999999999999998 66664 233
Q ss_pred hhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHH
Q 011602 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFL 455 (481)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~ 455 (481)
+++++||+.+++..+..+|+.+|+.+|++|+.++|+++++++.
T Consensus 62 -----v~av~~~~~~s~~~e~~~A~~lA~~LGi~~~~i~i~~~~~~~~ 104 (326)
T PRK00876 62 -----VYGLLMPERDSSPESLRLGREVAEHLGVEYVVEDITPALEALG 104 (326)
T ss_pred -----EEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEECchHHHHhh
Confidence 5899999877788899999999999999999999999999875
No 56
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=99.20 E-value=7.4e-11 Score=115.20 Aligned_cols=90 Identities=27% Similarity=0.390 Sum_probs=72.0
Q ss_pred HhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhc
Q 011602 331 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (481)
Q Consensus 331 ~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 410 (481)
....+..+|++++++.+.++++||||||+||+++|+++ .++++ .+.
T Consensus 5 ~~~~l~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~-------~~~~~--~~~------------------------- 50 (250)
T TIGR00552 5 YVEEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALC-------VEALG--EQN------------------------- 50 (250)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHH-------HHhhC--Cce-------------------------
Confidence 34456679999999999999999999999999998888 55543 221
Q ss_pred ceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHH
Q 011602 411 RIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLS 456 (481)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~ 456 (481)
+...++++..++..+.++|+++|+.+|++|+++++++.+..+..
T Consensus 51 --~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~~~ 94 (250)
T TIGR00552 51 --HALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPIAASFQA 94 (250)
T ss_pred --EEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEcchHHHHHHHH
Confidence 33445555556778899999999999999999999998886543
No 57
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=98.95 E-value=2e-09 Score=102.01 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=65.1
Q ss_pred hHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEe
Q 011602 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (481)
Q Consensus 338 ~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (481)
-|+.|++..+ +++|++|||+|||++|.++ .+++| ++ +.+||
T Consensus 9 ~l~~~ik~~~--kv~vAfSGGvDSslLa~la-------~~~lG---~~---------------------------v~AvT 49 (269)
T COG1606 9 RLKKAIKEKK--KVVVAFSGGVDSSLLAKLA-------KEALG---DN---------------------------VVAVT 49 (269)
T ss_pred HHHHHHhhcC--eEEEEecCCccHHHHHHHH-------HHHhc---cc---------------------------eEEEE
Confidence 4678888774 9999999999999999999 78886 44 47888
Q ss_pred cCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHH
Q 011602 418 MGSENSSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 418 ~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (481)
.-|++.+....+.|+..|+.+|++|..+++..+-
T Consensus 50 v~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~ 83 (269)
T COG1606 50 VDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD 83 (269)
T ss_pred EecCCCChhhhhHHHHHHHHhCCcceeeehhhcc
Confidence 8888899999999999999999999999987554
No 58
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=2.1e-08 Score=100.67 Aligned_cols=68 Identities=28% Similarity=0.338 Sum_probs=57.1
Q ss_pred CCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCC-----
Q 011602 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN----- 422 (481)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 422 (481)
.+++++++|||+|||++|+|+ .++ |.+ +.|++|....
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lL-------k~Q---Gye----------------------------ViGl~m~~~~~~~~~ 44 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLL-------KEQ---GYE----------------------------VIGLFMKNWDEDGGG 44 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHH-------HHc---CCe----------------------------EEEEEEEeeccCCCC
Confidence 478999999999999999998 454 344 6899997543
Q ss_pred --CcHHhHHHHHHHHHHhCCceEEeehHHHHHH
Q 011602 423 --SSQETRMLAKKLADEIGSWHLDVSIDTVVSA 453 (481)
Q Consensus 423 --~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~ 453 (481)
+++.+..+|+++|+.|||+|+.+|+.+-|..
T Consensus 45 ~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~ 77 (356)
T COG0482 45 GCCSEEDLRDAERVADQLGIPLYVVDFEKEFWN 77 (356)
T ss_pred cCCchhHHHHHHHHHHHhCCceEEEchHHHHHH
Confidence 5678889999999999999999999977765
No 59
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=98.77 E-value=3.9e-08 Score=96.20 Aligned_cols=76 Identities=29% Similarity=0.333 Sum_probs=62.1
Q ss_pred hHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEe
Q 011602 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (481)
Q Consensus 338 ~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (481)
.|.++|++. ++++|++|||+||+++++++ .+. | . + +.+++
T Consensus 4 ~l~~~l~~~--~~vlVa~SGGvDSs~ll~la-------~~~-g--~-~---------------------------v~av~ 43 (252)
T TIGR00268 4 NLRNFLKEF--KKVLIAYSGGVDSSLLAAVC-------SDA-G--T-E---------------------------VLAIT 43 (252)
T ss_pred HHHHHHHhc--CCEEEEecCcHHHHHHHHHH-------HHh-C--C-C---------------------------EEEEE
Confidence 577889886 78999999999999988887 333 3 2 2 57888
Q ss_pred cCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHH
Q 011602 418 MGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSA 453 (481)
Q Consensus 418 ~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~ 453 (481)
+.+...++.+.++|+++|+.+|++|++++++++.+.
T Consensus 44 ~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~~~~~ 79 (252)
T TIGR00268 44 VVSPSISPRELEDAIIIAKEIGVNHEFVKIDKMINP 79 (252)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHHHHHH
Confidence 887666777889999999999999999999875543
No 60
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.76 E-value=1.5e-08 Score=102.97 Aligned_cols=67 Identities=28% Similarity=0.362 Sum_probs=48.6
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCC-----
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS----- 423 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 423 (481)
+++++|||||+|||++|+|+ .++ |.+ +++++|-....
T Consensus 1 ~kV~vamSGGVDSsvaA~LL-------k~~---G~~----------------------------V~Gv~m~~~~~~~~~~ 42 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALL-------KEQ---GYD----------------------------VIGVTMRNWDEEDESG 42 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHH-------HHC---T-E----------------------------EEEEEEE-SS-SSSHH
T ss_pred CeEEEEccCCHHHHHHHHHH-------Hhh---ccc----------------------------ceEEEEEEeccccccC
Confidence 57999999999999988888 343 343 68999975433
Q ss_pred ----cHHhHHHHHHHHHHhCCceEEeehHHHHHH
Q 011602 424 ----SQETRMLAKKLADEIGSWHLDVSIDTVVSA 453 (481)
Q Consensus 424 ----~~~~~~~a~~la~~lg~~~~~i~i~~~~~~ 453 (481)
++.+.++|+++|+.||++|+++|+.+.|..
T Consensus 43 ~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~ 76 (356)
T PF03054_consen 43 KSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWE 76 (356)
T ss_dssp -HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHH
T ss_pred CCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 346789999999999999999999977763
No 61
>PLN02347 GMP synthetase
Probab=98.60 E-value=1.4e-07 Score=101.26 Aligned_cols=73 Identities=21% Similarity=0.219 Sum_probs=55.9
Q ss_pred HHHHHHcC-CCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEec
Q 011602 340 WDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (481)
Q Consensus 340 ~~~l~~~~-~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (481)
.+..++.+ .+++++|||||+||+++|+++ .+++| ++ ++|+++
T Consensus 220 ~~i~~~~~~~~~vvvalSGGVDSsvla~l~-------~~alG---~~---------------------------v~av~i 262 (536)
T PLN02347 220 ELIKATVGPDEHVICALSGGVDSTVAATLV-------HKAIG---DR---------------------------LHCVFV 262 (536)
T ss_pred HHHHHHhccCCeEEEEecCChhHHHHHHHH-------HHHhC---Cc---------------------------EEEEEE
Confidence 33334444 367999999999999999999 67775 33 689999
Q ss_pred CCCCCc-HHhHHHHHHHHHHhCCceEEeehHH
Q 011602 419 GSENSS-QETRMLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 419 ~~~~~~-~~~~~~a~~la~~lg~~~~~i~i~~ 449 (481)
++...+ .+..+.++.+|+.+|++|+.+|+++
T Consensus 263 d~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e 294 (536)
T PLN02347 263 DNGLLRYKEQERVMETFKRDLHLPVTCVDASE 294 (536)
T ss_pred eCCCCChhHHHHHHHHHHHHcCCcEEEEeCcH
Confidence 965433 3444555889999999999999986
No 62
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.53 E-value=2.3e-07 Score=93.19 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=57.0
Q ss_pred cchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEE
Q 011602 336 GCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYT 415 (481)
Q Consensus 336 ~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (481)
...|++.+++ ++++|++|||+||+++|+++ .+++| .+ +++
T Consensus 7 ~~~l~~~v~~---~kVvValSGGVDSsvla~ll-------~~~~G---~~---------------------------v~a 46 (311)
T TIGR00884 7 VEEIREQVGD---AKVIIALSGGVDSSVAAVLA-------HRAIG---DR---------------------------LTC 46 (311)
T ss_pred HHHHHHHhCC---CcEEEEecCChHHHHHHHHH-------HHHhC---CC---------------------------EEE
Confidence 3456666643 79999999999999998888 56664 22 689
Q ss_pred EecCCCCCcHHhHHHHHHH-HHHhCCceEEeehHHHH
Q 011602 416 VFMGSENSSQETRMLAKKL-ADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 416 ~~~~~~~~~~~~~~~a~~l-a~~lg~~~~~i~i~~~~ 451 (481)
+++.+....+.+.+++.+. ++.+|++|+.+++++.|
T Consensus 47 v~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~f 83 (311)
T TIGR00884 47 VFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKERF 83 (311)
T ss_pred EEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHHH
Confidence 9998765555566666665 55899999999998643
No 63
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.44 E-value=5.9e-07 Score=91.94 Aligned_cols=66 Identities=29% Similarity=0.314 Sum_probs=52.3
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCC--CcHH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN--SSQE 426 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 426 (481)
++++|++|||+||+++|.|+ .++ | .+ +++++|.... .+..
T Consensus 6 ~kVlValSGGVDSsvaa~LL-------~~~-G--~~----------------------------V~~v~~~~~~~~~~~~ 47 (360)
T PRK14665 6 KRVLLGMSGGTDSSVAAMLL-------LEA-G--YE----------------------------VTGVTFRFYEFNGSTE 47 (360)
T ss_pred CEEEEEEcCCHHHHHHHHHH-------HHc-C--Ce----------------------------EEEEEEecCCCCCChH
Confidence 68999999999999988888 332 2 22 5888887532 2566
Q ss_pred hHHHHHHHHHHhCCceEEeehHHHHH
Q 011602 427 TRMLAKKLADEIGSWHLDVSIDTVVS 452 (481)
Q Consensus 427 ~~~~a~~la~~lg~~~~~i~i~~~~~ 452 (481)
+.++|+++|+.||++|+++|+++.|.
T Consensus 48 d~~~a~~va~~LgIp~~vvd~~~~f~ 73 (360)
T PRK14665 48 YLEDARALAERLGIGHITYDARKVFR 73 (360)
T ss_pred HHHHHHHHHHHhCCCEEEEecHHHHH
Confidence 78899999999999999999976544
No 64
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.38 E-value=7.4e-07 Score=95.62 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=62.0
Q ss_pred HHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhh
Q 011602 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (481)
Q Consensus 330 ~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~ 409 (481)
.+.......|+++++. ++++|++|||+||+++|+++ .+++| .+
T Consensus 200 ~~~~~~~~~l~~~v~~---~~vlva~SGGvDS~vll~ll-------~~~lg---~~------------------------ 242 (511)
T PRK00074 200 NFIEEAIEEIREQVGD---KKVILGLSGGVDSSVAAVLL-------HKAIG---DQ------------------------ 242 (511)
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEeCCCccHHHHHHHH-------HHHhC---Cc------------------------
Confidence 4444456677777764 79999999999999998888 56664 22
Q ss_pred cceEEEEecCCCCCcHHhHHHHHH-HHHHhCCceEEeehHHHH
Q 011602 410 KRIFYTVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~a~~-la~~lg~~~~~i~i~~~~ 451 (481)
++++++.+....+.+.+++.+ +|+.+|++|+.+++++.+
T Consensus 243 ---v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~f 282 (511)
T PRK00074 243 ---LTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDRF 282 (511)
T ss_pred ---eEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHHH
Confidence 689999876544445566665 789999999999998643
No 65
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.37 E-value=9.9e-07 Score=83.11 Aligned_cols=64 Identities=27% Similarity=0.308 Sum_probs=52.4
Q ss_pred CCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHh
Q 011602 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (481)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (481)
.++.++-||||+||+++++.+ .+. + +. +++++.-.-.-...+
T Consensus 2 ~~kavvl~SGG~DStt~l~~a-------~~~---~-~e---------------------------v~alsfdYGQrh~~E 43 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWA-------KKE---G-YE---------------------------VHALTFDYGQRHRKE 43 (222)
T ss_pred CceEEEEccCChhHHHHHHHH-------Hhc---C-CE---------------------------EEEEEeeCCCCcHHH
Confidence 467899999999999988888 333 2 22 688888765556888
Q ss_pred HHHHHHHHHHhCCceEEeehHH
Q 011602 428 RMLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 428 ~~~a~~la~~lg~~~~~i~i~~ 449 (481)
.+.|+++|+.||++|++||++-
T Consensus 44 le~A~~iak~lgv~~~iid~~~ 65 (222)
T COG0603 44 LEAAKELAKKLGVPHHIIDVDL 65 (222)
T ss_pred HHHHHHHHHHcCCCeEEechhH
Confidence 9999999999999999999963
No 66
>PRK00919 GMP synthase subunit B; Validated
Probab=98.36 E-value=9.6e-07 Score=88.28 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=62.3
Q ss_pred HHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhh
Q 011602 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (481)
Q Consensus 330 ~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~ 409 (481)
.+.......|++.++. ++++|++|||+||+++|+++ .+++| .+
T Consensus 6 ~~~~~~~~~l~~~~~~---~kVlVa~SGGVDSsvla~la-------~~~lG---~~------------------------ 48 (307)
T PRK00919 6 KFIEEAIEEIREEIGD---GKAIIALSGGVDSSVAAVLA-------HRAIG---DR------------------------ 48 (307)
T ss_pred HHHHHHHHHHHHHhCC---CCEEEEecCCHHHHHHHHHH-------HHHhC---Ce------------------------
Confidence 3344445566776653 79999999999999999888 56665 22
Q ss_pred cceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHH
Q 011602 410 KRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (481)
+++++..+....+.+.+.++++|+.+ ++|..+++++.+
T Consensus 49 ---v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~vvd~~e~f 86 (307)
T PRK00919 49 ---LTPVFVDTGLMRKGETERIKETFSDM-LNLRIVDAKDRF 86 (307)
T ss_pred ---EEEEEEECCCCCHHHHHHHHHHHhcc-CCcEEEECCHHH
Confidence 68888887665677889999999988 999999988644
No 67
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.30 E-value=1.8e-06 Score=85.96 Aligned_cols=63 Identities=24% Similarity=0.312 Sum_probs=52.1
Q ss_pred cEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHH
Q 011602 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (481)
+++|++|||+||+++|+++ .+++| . + ++++++.+....+.+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll-------~~~lG--~-~---------------------------v~aV~vd~g~~~~~E~~ 43 (295)
T cd01997 1 KVILALSGGVDSTVAAVLL-------HKAIG--D-R---------------------------LTCVFVDNGLLRKNEAE 43 (295)
T ss_pred CEEEEEcCChHHHHHHHHH-------HHHhC--C-c---------------------------EEEEEecCCCCChHHHH
Confidence 5799999999999999988 56665 2 2 58899887655567788
Q ss_pred HHHHHHHHhCC-ceEEeehHH
Q 011602 430 LAKKLADEIGS-WHLDVSIDT 449 (481)
Q Consensus 430 ~a~~la~~lg~-~~~~i~i~~ 449 (481)
+++++|+.+|+ +|+.+++++
T Consensus 44 ~~~~~~~~~g~i~~~vvd~~e 64 (295)
T cd01997 44 RVEELFSKLLGINLIVVDASE 64 (295)
T ss_pred HHHHHHHHhCCCcEEEEcCcH
Confidence 99999999987 999999975
No 68
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.29 E-value=3e-06 Score=86.76 Aligned_cols=65 Identities=26% Similarity=0.326 Sum_probs=50.3
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCC-------C
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS-------E 421 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 421 (481)
++++|++|||+||+++|.++ .++ + .+ +++++|.. .
T Consensus 1 ~kVlValSGGvDSsv~a~lL-------~~~-G--~~----------------------------V~~v~~~~~~~~~~~~ 42 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLL-------KQQ-G--YE----------------------------VVGVFMKNWEEDDKND 42 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHH-------HHc-C--Ce----------------------------EEEEEEEccccccccc
Confidence 37899999999999988887 332 2 22 58888831 1
Q ss_pred C---CcHHhHHHHHHHHHHhCCceEEeehHHHH
Q 011602 422 N---SSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 422 ~---~~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (481)
. .++.+.++|+++|+.||++|+.+++++.|
T Consensus 43 ~~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f 75 (352)
T TIGR00420 43 GHGCTSAEDLRDAQAICEKLGIPLEKVNFQKEY 75 (352)
T ss_pred ccCcCCHHHHHHHHHHHHHcCCCEEEEECHHHH
Confidence 1 34568889999999999999999997655
No 69
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=98.28 E-value=4.3e-06 Score=75.24 Aligned_cols=72 Identities=21% Similarity=0.222 Sum_probs=50.9
Q ss_pred cEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHH
Q 011602 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (481)
.++|++|||+||+++++++ .+..+ .+ +.++++.....++.+.+
T Consensus 3 d~~v~lSGG~DSs~ll~l~-------~~~~~---~~---------------------------v~~v~~~~g~~~~~~~~ 45 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLL-------KEKYG---LN---------------------------PLAVTVDNGFNSEEAVK 45 (154)
T ss_pred CEEEECCCchhHHHHHHHH-------HHHhC---Cc---------------------------eEEEEeCCCCCCHHHHH
Confidence 5899999999999988887 44321 12 46777776556677889
Q ss_pred HHHHHHHH-hCCceEEeehHHHHHHHHHHH
Q 011602 430 LAKKLADE-IGSWHLDVSIDTVVSAFLSLF 458 (481)
Q Consensus 430 ~a~~la~~-lg~~~~~i~i~~~~~~~~~~~ 458 (481)
.++++|+. +++.+..+++++..+.....+
T Consensus 46 ~~~~~a~~g~~~~~~~~~~~~~~~~~~~~l 75 (154)
T cd01996 46 NIKNLIKKGLDLDHLVINPEEMKDLQLARF 75 (154)
T ss_pred HHHHHHHhCCCeEEEecCHHHHHHHHHHHH
Confidence 99999999 555566677766555443333
No 70
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.27 E-value=1.7e-06 Score=83.13 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=51.2
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
++++|.+|||+||+++++++ .+. + . + ++++++-+......+.
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a-------~~~-~--~-~---------------------------v~alt~dygq~~~~El 43 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQA-------LQQ-Y--D-E---------------------------VHCVTFDYGQRHRAEI 43 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHH-------Hhc-C--C-e---------------------------EEEEEEEeCCCCHHHH
Confidence 57999999999999988777 332 1 1 2 5788887655556789
Q ss_pred HHHHHHHHHhCCc-eEEeehHHH
Q 011602 429 MLAKKLADEIGSW-HLDVSIDTV 450 (481)
Q Consensus 429 ~~a~~la~~lg~~-~~~i~i~~~ 450 (481)
+.|+++|+.+|++ |+++|++..
T Consensus 44 ~~a~~ia~~~gi~~h~vid~~~l 66 (231)
T PRK11106 44 DVARELALKLGARAHKVLDVTLL 66 (231)
T ss_pred HHHHHHHHHcCCCeEEEEecccc
Confidence 9999999999996 999999843
No 71
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.27 E-value=2.1e-06 Score=88.36 Aligned_cols=66 Identities=26% Similarity=0.325 Sum_probs=53.9
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
++++|++|||+||++++.++ .+ .| .+ ++++++-+...+..+.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l-------~e-~G--~~----------------------------Viavt~d~gq~~~~El 44 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYL-------QE-RG--YA----------------------------VHTVFADTGGVDAEER 44 (400)
T ss_pred CcEEEEEcCChHHHHHHHHH-------HH-cC--Cc----------------------------EEEEEEEeCCCCHHHH
Confidence 68999999999999988777 33 23 32 5888887665556789
Q ss_pred HHHHHHHHHhCC-ceEEeehHHHHH
Q 011602 429 MLAKKLADEIGS-WHLDVSIDTVVS 452 (481)
Q Consensus 429 ~~a~~la~~lg~-~~~~i~i~~~~~ 452 (481)
++|+++|+.+|+ +|+++|+++.+.
T Consensus 45 ~~a~~~A~~lG~~~~~viD~~eef~ 69 (400)
T PRK04527 45 DFIEKRAAELGAASHVTVDGGPAIW 69 (400)
T ss_pred HHHHHHHHHcCCCeEEEecCHHHHH
Confidence 999999999999 599999997765
No 72
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.24 E-value=2.7e-06 Score=80.29 Aligned_cols=63 Identities=27% Similarity=0.331 Sum_probs=50.3
Q ss_pred EEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHHH
Q 011602 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (481)
Q Consensus 351 ~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (481)
++|++|||+||++++.++ .+..+ .+ +.++++.....++.+.+.
T Consensus 1 vvva~SGG~DS~~ll~ll-------~~~~~---~~---------------------------v~~v~vd~g~~~~~~~~~ 43 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAA-------VDALG---DR---------------------------VLAVTATSPLFPRRELEE 43 (202)
T ss_pred CEEEccCCHHHHHHHHHH-------HHHhC---Cc---------------------------EEEEEeCCCCCCHHHHHH
Confidence 589999999999988887 34322 12 578888766556778999
Q ss_pred HHHHHHHhCCceEEeehHHH
Q 011602 431 AKKLADEIGSWHLDVSIDTV 450 (481)
Q Consensus 431 a~~la~~lg~~~~~i~i~~~ 450 (481)
|+++|+.+|++|+.+++++.
T Consensus 44 ~~~~a~~lgi~~~~~~~~~~ 63 (202)
T cd01990 44 AKRLAKEIGIRHEVIETDEL 63 (202)
T ss_pred HHHHHHHcCCcEEEEeCCcc
Confidence 99999999999999998743
No 73
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.22 E-value=3.3e-06 Score=86.38 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=49.7
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
++++|++|||+||+++|+++ .+ .| .+ +++++|... ..+.
T Consensus 6 ~kVlVa~SGGvDSsv~a~lL-------~~-~G--~e----------------------------V~av~~~~~---~~e~ 44 (362)
T PRK14664 6 KRVLVGMSGGIDSTATCLML-------QE-QG--YE----------------------------IVGVTMRVW---GDEP 44 (362)
T ss_pred CEEEEEEeCCHHHHHHHHHH-------HH-cC--Cc----------------------------EEEEEecCc---chhH
Confidence 68999999999999988776 22 22 22 589999753 2345
Q ss_pred HHHHHHHHHhCCceEEeehHHHHH
Q 011602 429 MLAKKLADEIGSWHLDVSIDTVVS 452 (481)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~~~~~ 452 (481)
++|+++|+.+|++|+.+|+++.+.
T Consensus 45 ~~a~~va~~LGI~~~vvd~~~~f~ 68 (362)
T PRK14664 45 QDARELAARMGIEHYVADERVPFK 68 (362)
T ss_pred HHHHHHHHHhCCCEEEEeChHHHH
Confidence 689999999999999999986554
No 74
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=5.6e-06 Score=80.56 Aligned_cols=74 Identities=24% Similarity=0.359 Sum_probs=55.8
Q ss_pred CCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCC-------
Q 011602 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS------- 420 (481)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 420 (481)
..++++++|||+|||+.|.|. ..+ |.. +.+++|..
T Consensus 5 ~~~VvvamSgGVDSsVaa~Ll-------~~~---g~~----------------------------v~gv~M~nWd~~de~ 46 (377)
T KOG2805|consen 5 PDRVVVAMSGGVDSSVAARLL-------AAR---GYN----------------------------VTGVFMKNWDSLDEF 46 (377)
T ss_pred cceEEEEecCCchHHHHHHHH-------Hhc---CCC----------------------------eeEEeeecccccccc
Confidence 478999999999999988777 232 232 58999853
Q ss_pred --CCCcHHhHHHHHHHHHHhCCceEEeehH-----HHHHHHHHHHH
Q 011602 421 --ENSSQETRMLAKKLADEIGSWHLDVSID-----TVVSAFLSLFQ 459 (481)
Q Consensus 421 --~~~~~~~~~~a~~la~~lg~~~~~i~i~-----~~~~~~~~~~~ 459 (481)
.-..+.+.++|+++|+.|+|+++.+|.. .+|..|++..+
T Consensus 47 ~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~Vfs~~L~~Y~ 92 (377)
T KOG2805|consen 47 GSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDVFSPFLEEYE 92 (377)
T ss_pred ccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHHHHHHHHHHh
Confidence 2245788999999999999999999986 34445555444
No 75
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.22 E-value=9.2e-06 Score=83.03 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=54.5
Q ss_pred HHHHHHHcCC--CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEE
Q 011602 339 LWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (481)
Q Consensus 339 l~~~l~~~~~--~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (481)
|.+.+|+.+- -.++||+|||+||+++|.++ .+.+| .+ ..++
T Consensus 48 l~~~~k~~~~~~yD~iV~lSGGkDSs~la~ll-------~~~~g---l~---------------------------~l~v 90 (343)
T TIGR03573 48 LVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVL-------KKKLG---LN---------------------------PLLV 90 (343)
T ss_pred HHHHHHhcCCCCCCEEEECCCCHHHHHHHHHH-------HHHhC---Cc---------------------------eEEE
Confidence 3455555542 34999999999999988777 44554 12 3667
Q ss_pred ecCCCCCcHHhHHHHHHHHHHhCCceEEeehH
Q 011602 417 FMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 417 ~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~ 448 (481)
++.....++...++++++++.+|++|+.+.++
T Consensus 91 t~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d 122 (343)
T TIGR03573 91 TVDPGWNTELGVKNLNNLIKKLGFDLHTITIN 122 (343)
T ss_pred EECCCCCCHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 77655567788889999999999999998775
No 76
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.19 E-value=3.1e-06 Score=79.89 Aligned_cols=61 Identities=23% Similarity=0.301 Sum_probs=48.5
Q ss_pred EEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHHH
Q 011602 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (481)
Q Consensus 351 ~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (481)
++|++|||+||+++++++ .+. + . + +.++++........+.+.
T Consensus 1 ~vv~lSGG~DSs~~~~~~-------~~~-g--~-~---------------------------v~~~~~~~~~~~~~e~~~ 42 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIA-------KDE-G--Y-E---------------------------VHAITFDYGQRHSRELES 42 (201)
T ss_pred CEEEeccHHHHHHHHHHH-------HHc-C--C-c---------------------------EEEEEEECCCCCHHHHHH
Confidence 479999999999987777 232 2 2 2 578888765556678889
Q ss_pred HHHHHHHhCCceEEeehHH
Q 011602 431 AKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 431 a~~la~~lg~~~~~i~i~~ 449 (481)
|+++|+.+|++|++++++.
T Consensus 43 a~~~a~~lgi~~~~~~~~~ 61 (201)
T TIGR00364 43 ARKIAEALGIEHHVIDLSL 61 (201)
T ss_pred HHHHHHHhCCCeEEEechh
Confidence 9999999999999999985
No 77
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.17 E-value=7e-06 Score=84.07 Aligned_cols=64 Identities=31% Similarity=0.405 Sum_probs=49.1
Q ss_pred cEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCC-------
Q 011602 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN------- 422 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 422 (481)
++++++|||+||+++|+++ .+ .+ .+ +++++|....
T Consensus 1 kVlValSGGvDSsvla~lL-------~~-~g--~~----------------------------v~~v~i~~~~~~~~~~~ 42 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALL-------KE-QG--YE----------------------------VIGVFMKNWDEDDGKGG 42 (349)
T ss_pred CEEEEecCCHHHHHHHHHH-------HH-cC--Cc----------------------------EEEEEEecccccccccC
Confidence 4899999999999988777 23 22 22 5788875431
Q ss_pred -CcHHhHHHHHHHHHHhCCceEEeehHHHH
Q 011602 423 -SSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 423 -~~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (481)
.+..+.++|+++|+.+|++|+.+++++.+
T Consensus 43 ~~s~~d~~~a~~va~~lgI~~~vvd~~~~f 72 (349)
T cd01998 43 CCSEEDLKDARRVADQLGIPHYVVNFEKEY 72 (349)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEECcHHH
Confidence 35678899999999999999999997544
No 78
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.17 E-value=5.4e-06 Score=84.79 Aligned_cols=65 Identities=29% Similarity=0.373 Sum_probs=49.9
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCC------
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN------ 422 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 422 (481)
+++++++|||+||+++|.++ .+ .+ .+ +.+++|....
T Consensus 1 ~kVlValSGGvDSsvla~lL-------~~-~G--~~----------------------------V~~v~~~~~~~~~~~~ 42 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALL-------KE-QG--YE----------------------------VIGVFMKLWDDDDETG 42 (346)
T ss_pred CeEEEEecCCHHHHHHHHHH-------HH-cC--Cc----------------------------EEEEEEeCCCcccccc
Confidence 37999999999999988777 33 22 22 4677775421
Q ss_pred ----CcHHhHHHHHHHHHHhCCceEEeehHHHH
Q 011602 423 ----SSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 423 ----~~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (481)
.+..+.++|+++|+.+|++|+.+++++.+
T Consensus 43 ~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f 75 (346)
T PRK00143 43 KGGCCAEEDIADARRVADKLGIPHYVVDFEKEF 75 (346)
T ss_pred cCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHH
Confidence 24678889999999999999999997654
No 79
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.12 E-value=7.4e-06 Score=85.26 Aligned_cols=69 Identities=23% Similarity=0.202 Sum_probs=53.6
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCC-CCCcHHh
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGS-ENSSQET 427 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 427 (481)
.+++++||||+||+++|.++ .+. | .+ +.++++.+ .++++.+
T Consensus 177 gkvvvllSGGiDS~vaa~l~-------~k~-G--~~----------------------------v~av~~~~~~~~~~~~ 218 (394)
T PRK01565 177 GKALLLLSGGIDSPVAGYLA-------MKR-G--VE----------------------------IEAVHFHSPPYTSERA 218 (394)
T ss_pred CCEEEEECCChhHHHHHHHH-------HHC-C--CE----------------------------EEEEEEeCCCCCcHHH
Confidence 57999999999999988887 232 2 22 56777754 3667788
Q ss_pred HHHHHHHHHHhC-----CceEEeehHHHHHHHH
Q 011602 428 RMLAKKLADEIG-----SWHLDVSIDTVVSAFL 455 (481)
Q Consensus 428 ~~~a~~la~~lg-----~~~~~i~i~~~~~~~~ 455 (481)
.+.++++|+.++ ++|+++|+++..+.+.
T Consensus 219 ~~~~~~~a~~l~~~~~~i~~~vv~~~~~~~~i~ 251 (394)
T PRK01565 219 KEKVIDLARILAKYGGRIKLHVVPFTEIQEEIK 251 (394)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHh
Confidence 899999999995 9999999998765444
No 80
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.10 E-value=6.1e-06 Score=78.34 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=47.6
Q ss_pred cEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHH
Q 011602 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (481)
++++.+|||+||+++++++ .+. + . + +++++.-.-...+.+.+
T Consensus 1 Kavvl~SGG~DSt~~l~~~-------~~~-~--~-~---------------------------v~al~~~YGq~~~~El~ 42 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWA-------KKE-G--Y-E---------------------------VYALTFDYGQRHRRELE 42 (209)
T ss_dssp EEEEE--SSHHHHHHHHHH-------HHH----S-E---------------------------EEEEEEESSSTTCHHHH
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHc-C--C-e---------------------------EEEEEEECCCCCHHHHH
Confidence 5789999999999988877 333 1 1 1 57888776556778899
Q ss_pred HHHHHHHHhCC-ceEEeehHHHHH
Q 011602 430 LAKKLADEIGS-WHLDVSIDTVVS 452 (481)
Q Consensus 430 ~a~~la~~lg~-~~~~i~i~~~~~ 452 (481)
.|+++++.+|+ +|++|+++.+-+
T Consensus 43 ~a~~i~~~l~v~~~~~i~l~~~~~ 66 (209)
T PF06508_consen 43 AAKKIAKKLGVKEHEVIDLSFLKE 66 (209)
T ss_dssp HHHHHHHHCT-SEEEEEE-CHHHH
T ss_pred HHHHHHHHhCCCCCEEeeHHHHHh
Confidence 99999999999 999999985443
No 81
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.09 E-value=8.4e-06 Score=84.12 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=52.6
Q ss_pred CCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHh
Q 011602 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (481)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (481)
.++++|++|||+||++++.++ .++++ .++ ++++++... ....+
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL-------~e~~g--~~~---------------------------Viav~vd~g-~~~~e 44 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLL-------KEKYG--YDE---------------------------VITVTVDVG-QPEEE 44 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHH-------HHhcC--CCE---------------------------EEEEEEECC-CChHH
Confidence 378999999999999988877 45443 212 578888753 33457
Q ss_pred HHHHHHHHHHhCCceEEeehHHHHH
Q 011602 428 RMLAKKLADEIGSWHLDVSIDTVVS 452 (481)
Q Consensus 428 ~~~a~~la~~lg~~~~~i~i~~~~~ 452 (481)
.+.++++|+.+|++|+++|+.+.|.
T Consensus 45 ~~~a~~~a~~lGi~~~vvd~~eef~ 69 (394)
T PRK13820 45 IKEAEEKAKKLGDKHYTIDAKEEFA 69 (394)
T ss_pred HHHHHHHHHHcCCCEEEEeCHHHHH
Confidence 8899999999999999999995443
No 82
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.05 E-value=1.2e-05 Score=82.97 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=51.2
Q ss_pred CCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHh
Q 011602 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (481)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (481)
.++++|++|||+||++++.++ .+.+| .+ ++++++-.... .+
T Consensus 2 ~~kVvva~SGGlDSsvla~~l-------~e~lG--~e----------------------------Viavt~d~Gq~--~d 42 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWL-------KETYG--CE----------------------------VIAFTADVGQG--EE 42 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHH-------HHhhC--Ce----------------------------EEEEEEecCCH--HH
Confidence 468999999999999988877 45444 22 57888865432 68
Q ss_pred HHHHHHHHHHhCC-ceEEeehHHHHH
Q 011602 428 RMLAKKLADEIGS-WHLDVSIDTVVS 452 (481)
Q Consensus 428 ~~~a~~la~~lg~-~~~~i~i~~~~~ 452 (481)
.++|+++|+.+|+ .|+++|+.+.|.
T Consensus 43 le~a~~~A~~lGi~~~~viD~~~ef~ 68 (399)
T PRK00509 43 LEPIREKALKSGASEIYVEDLREEFV 68 (399)
T ss_pred HHHHHHHHHHcCCCeEEEEcCHHHHH
Confidence 8999999999998 578789985553
No 83
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.03 E-value=1.9e-05 Score=73.07 Aligned_cols=70 Identities=23% Similarity=0.198 Sum_probs=50.2
Q ss_pred cEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCC--CcHHh
Q 011602 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN--SSQET 427 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 427 (481)
+++|++|||.||++++.++ .+..+ . ++.+ + .++++++.... .++.+
T Consensus 1 ~v~v~~SGG~DS~~ll~~l-------~~~~~---~--------~~~~----~----------~~~~~~~d~~~~~~~~~~ 48 (185)
T cd01993 1 RILVALSGGKDSLVLLHVL-------KKLQR---R--------YPYG----F----------ELEALTVDEGIPGYRDES 48 (185)
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHHHh---h--------cCCC----e----------EEEEEEEECCCCCCcHHH
Confidence 4899999999999988887 33321 0 0000 0 15777776433 35678
Q ss_pred HHHHHHHHHHhCCceEEeehHHHH
Q 011602 428 RMLAKKLADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 428 ~~~a~~la~~lg~~~~~i~i~~~~ 451 (481)
.+.++++|+.+|+++..+++++.+
T Consensus 49 ~~~~~~~~~~~~i~~~~~~~~~~~ 72 (185)
T cd01993 49 LEVVERLAEELGIELEIVSFKEEY 72 (185)
T ss_pred HHHHHHHHHHcCCceEEEehhhhc
Confidence 899999999999999999998654
No 84
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=97.98 E-value=1e-05 Score=78.42 Aligned_cols=79 Identities=27% Similarity=0.296 Sum_probs=51.1
Q ss_pred hccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcc
Q 011602 332 AFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKR 411 (481)
Q Consensus 332 ~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (481)
.+.+...+.++++ ..+.+.+.||||+||+++++++ .+.. ...
T Consensus 3 r~~l~~av~~rl~--~~~~i~~~LSGGlDSs~i~~~~-------~~~~---~~~-------------------------- 44 (255)
T PF00733_consen 3 RELLEEAVARRLR--SDKPIGILLSGGLDSSAIAALA-------ARQG---GPP-------------------------- 44 (255)
T ss_dssp HHHHHHHHHHHCG--CTSEEEEE--SSHHHHHHHHHH-------HHTC---CSE--------------------------
T ss_pred HHHHHHHHHHHHh--cCCCEEEECCCChhHHHHHHHH-------HHhh---CCc--------------------------
Confidence 3344445556666 3478999999999999999998 3311 111
Q ss_pred eEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHH
Q 011602 412 IFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (481)
+.+++.-.......+...|+++|+.+|.+|+.+++++
T Consensus 45 -~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~~~ 81 (255)
T PF00733_consen 45 -IKTFTIGFEDDDYDEREYARKVARHLGLEHHEIELDP 81 (255)
T ss_dssp -EEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEEE-H
T ss_pred -eeEEEEEcCCCcchhHHHHHHHhcccccccceeeech
Confidence 4555554434444478899999999999999988865
No 85
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=97.95 E-value=1.8e-05 Score=74.24 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=42.1
Q ss_pred cEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCC------
Q 011602 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS------ 423 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 423 (481)
++++++|||.||++++.++ .+ .| .+ +.++++-+...
T Consensus 1 kv~v~~SGGkDS~~al~~a-------~~-~G--~~----------------------------v~~l~~~~~~~~~~~~~ 42 (194)
T cd01994 1 KVVALISGGKDSCYALYRA-------LE-EG--HE----------------------------VVALLNLTPEEGSSMMY 42 (194)
T ss_pred CEEEEecCCHHHHHHHHHH-------HH-cC--CE----------------------------EEEEEEEecCCCCcccc
Confidence 4789999999999977777 33 22 32 23443322111
Q ss_pred cHHhHHHHHHHHHHhCCceEEeehH
Q 011602 424 SQETRMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 424 ~~~~~~~a~~la~~lg~~~~~i~i~ 448 (481)
.....+.++++|+.+|++|+.++++
T Consensus 43 h~~~~e~~~~~A~~lgipl~~i~~~ 67 (194)
T cd01994 43 HTVNHELLELQAEAMGIPLIRIEIS 67 (194)
T ss_pred cccCHHHHHHHHHHcCCcEEEEeCC
Confidence 1236789999999999999999864
No 86
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=97.92 E-value=3.3e-05 Score=72.00 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=48.0
Q ss_pred cEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCC--CcHHh
Q 011602 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN--SSQET 427 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 427 (481)
+++|++|||.||++++.++ .+..+....+ +.++++.... .++.+
T Consensus 1 ~v~va~SGG~DS~~ll~ll-------~~~~~~~~~~---------------------------v~~v~vd~g~~~~~~~~ 46 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLL-------LKLQPKLKIR---------------------------LIAAHVDHGLRPESDEE 46 (189)
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHHHHHcCCC---------------------------EEEEEeCCCCChhHHHH
Confidence 4899999999999988887 3332100001 5778776433 34667
Q ss_pred HHHHHHHHHHhCCceEEeehHH
Q 011602 428 RMLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 428 ~~~a~~la~~lg~~~~~i~i~~ 449 (481)
.+.++++|+.+|++++.++++.
T Consensus 47 ~~~~~~~~~~~gi~~~~~~~~~ 68 (189)
T TIGR02432 47 AEFVQQFCKKLNIPLEIKKVDV 68 (189)
T ss_pred HHHHHHHHHHcCCCEEEEEecc
Confidence 8899999999999999998853
No 87
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=97.90 E-value=1.7e-05 Score=77.99 Aligned_cols=64 Identities=30% Similarity=0.445 Sum_probs=45.4
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
..+.+.||||+||+++|+++ .+..+ ..+ + ..++..+. ....+.
T Consensus 16 ~~v~~~LSGGlDSs~va~~~-------~~~~~---~~~---------------~----------~~~~~~~~--~~~~e~ 58 (269)
T cd01991 16 VPVGVLLSGGLDSSLVAALA-------ARLLP---EPV---------------K----------TFSIGFGF--EGSDER 58 (269)
T ss_pred CceEEeecccHHHHHHHHHH-------HHhhC---CCC---------------c----------eEEEeeCC--CCCChH
Confidence 68999999999999998888 33321 111 0 23444432 233457
Q ss_pred HHHHHHHHHhCCceEEeehHH
Q 011602 429 MLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~~ 449 (481)
..|+++|+.+|++|+.+++++
T Consensus 59 ~~a~~~a~~l~~~~~~~~~~~ 79 (269)
T cd01991 59 EYARRVAEHLGTEHHEVEFTP 79 (269)
T ss_pred HHHHHHHHHhCCcceEEEcCH
Confidence 899999999999999998763
No 88
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=97.85 E-value=5.3e-05 Score=72.98 Aligned_cols=76 Identities=26% Similarity=0.400 Sum_probs=52.1
Q ss_pred cCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCc-
Q 011602 346 SGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSS- 424 (481)
Q Consensus 346 ~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 424 (481)
-|.+++++|||||+||+++|.|+ .+|+| ++ ++|++...-.--
T Consensus 19 vg~~kvi~alSGGVDSsv~a~L~-------~~AiG---d~---------------------------l~cvfVD~GLlR~ 61 (315)
T COG0519 19 VGDGKVILALSGGVDSSVAAVLA-------HRAIG---DQ---------------------------LTCVFVDHGLLRK 61 (315)
T ss_pred hCCceEEEEecCCCcHHHHHHHH-------HHHhh---cc---------------------------eEEEEecCCcccC
Confidence 46689999999999999999999 78887 32 678877643222
Q ss_pred HHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHh
Q 011602 425 QETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTL 461 (481)
Q Consensus 425 ~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~ 461 (481)
.+...--+.+.+.+|++...+|-. +.|++.++.+
T Consensus 62 ~E~e~V~~~f~~~~~~nl~~VdA~---~~Fl~~L~Gv 95 (315)
T COG0519 62 GEAEQVVEMFREHLGLNLIVVDAK---DRFLSALKGV 95 (315)
T ss_pred CcHHHHHHHHHhhcCCceEEEchH---HHHHHHhcCC
Confidence 222333344566689999888876 4555544433
No 89
>PRK14561 hypothetical protein; Provisional
Probab=97.84 E-value=3.6e-05 Score=72.24 Aligned_cols=60 Identities=27% Similarity=0.259 Sum_probs=42.4
Q ss_pred cEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHH
Q 011602 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (481)
++++++|||+||+++++++ .+.. ++ .+.++..+. ..+.+
T Consensus 2 kV~ValSGG~DSslll~~l-------~~~~-----~v-------------------------~a~t~~~g~----~~e~~ 40 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILL-------ERFY-----DV-------------------------ELVTVNFGV----LDSWK 40 (194)
T ss_pred EEEEEEechHHHHHHHHHH-------HhcC-----Ce-------------------------EEEEEecCc----hhHHH
Confidence 5899999999999987765 1211 00 023333332 24578
Q ss_pred HHHHHHHHhCCceEEeehHHH
Q 011602 430 LAKKLADEIGSWHLDVSIDTV 450 (481)
Q Consensus 430 ~a~~la~~lg~~~~~i~i~~~ 450 (481)
.|+++|+.+|++|+.+++++.
T Consensus 41 ~a~~~a~~lGi~~~~v~~~~~ 61 (194)
T PRK14561 41 HAREAAKALGFPHRVLELDRE 61 (194)
T ss_pred HHHHHHHHhCCCEEEEECCHH
Confidence 999999999999999998763
No 90
>PLN00200 argininosuccinate synthase; Provisional
Probab=97.81 E-value=5.7e-05 Score=78.20 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=49.3
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
++++|++|||+||++++.++ .+.+| .+ ++++++-... ...+.
T Consensus 6 ~kVvva~SGGlDSsvla~~L-------~e~~G--~e----------------------------Viav~id~Gq-~~~el 47 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWL-------RENYG--CE----------------------------VVCFTADVGQ-GIEEL 47 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHH-------HHhhC--Ce----------------------------EEEEEEECCC-ChHHH
Confidence 58999999999999987777 44433 22 5788776543 34678
Q ss_pred HHHHHHHHHhCCce-EEeehHHHH
Q 011602 429 MLAKKLADEIGSWH-LDVSIDTVV 451 (481)
Q Consensus 429 ~~a~~la~~lg~~~-~~i~i~~~~ 451 (481)
++|+++|+.+|+++ +++|..+.|
T Consensus 48 ~~a~~~A~~lGi~~~~v~dl~~ef 71 (404)
T PLN00200 48 EGLEAKAKASGAKQLVVKDLREEF 71 (404)
T ss_pred HHHHHHHHHcCCCEEEEEeCHHHH
Confidence 99999999999974 777877544
No 91
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=97.80 E-value=6e-05 Score=68.24 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=52.9
Q ss_pred cEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHH
Q 011602 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (481)
.++|++|||.||++++.|+ .++..+. .+ +..+++.+....+++.+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~-------~~~~~~~-~~---------------------------~~~v~~dtg~~~~~~~~ 45 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLA-------LKALPEL-KP---------------------------VPVIFLDTGYEFPETYE 45 (173)
T ss_pred CeEEEecCChHHHHHHHHH-------HHhcccc-cC---------------------------ceEEEeCCCCCCHHHHH
Confidence 4789999999999988888 4442100 01 46788877666788999
Q ss_pred HHHHHHHHhCCceEEeehHHHHH
Q 011602 430 LAKKLADEIGSWHLDVSIDTVVS 452 (481)
Q Consensus 430 ~a~~la~~lg~~~~~i~i~~~~~ 452 (481)
.++++++.+|+++..+..+....
T Consensus 46 ~~~~~~~~~g~~~~~~~~~~~~~ 68 (173)
T cd01713 46 FVDRVAERYGLPLVVVRPPDSPA 68 (173)
T ss_pred HHHHHHHHhCCCeEEECCCccHH
Confidence 99999999999999998876544
No 92
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=97.77 E-value=6.8e-05 Score=77.63 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=48.2
Q ss_pred cEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHH
Q 011602 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (481)
+++|++|||+||++++.++ .+. | .+ ++++++-.. ....+.+
T Consensus 1 kVvla~SGGlDSsvll~~l-------~e~-g--~~----------------------------V~av~id~G-q~~~e~~ 41 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWL-------REK-G--YE----------------------------VIAYTADVG-QPEEDID 41 (394)
T ss_pred CEEEEEcCCHHHHHHHHHH-------HHc-C--CE----------------------------EEEEEEecC-CChHHHH
Confidence 5899999999999987777 333 2 22 577777543 2367888
Q ss_pred HHHHHHHHhCC-ceEEeehHHHH
Q 011602 430 LAKKLADEIGS-WHLDVSIDTVV 451 (481)
Q Consensus 430 ~a~~la~~lg~-~~~~i~i~~~~ 451 (481)
.++++|+.+|+ +|+++|+++.|
T Consensus 42 ~a~~~a~~lGi~~~~viD~~~ef 64 (394)
T TIGR00032 42 AIPEKALEYGAENHYTIDAREEF 64 (394)
T ss_pred HHHHHHHHhCCCeEEEEeCHHHH
Confidence 99999999998 79999997433
No 93
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=97.76 E-value=8.2e-05 Score=80.99 Aligned_cols=88 Identities=23% Similarity=0.225 Sum_probs=55.3
Q ss_pred HHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhh
Q 011602 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (481)
Q Consensus 329 ~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~ 408 (481)
+++...+....+.+|.. -..+.+.||||+||+++|+++ .+.+++..... .+
T Consensus 208 ~~lr~~L~~aV~~rl~s--dvpvgv~LSGGLDSSlIaala-------~~~~~~~~~~~-----~~--------------- 258 (578)
T PLN02549 208 LVLREAFEKAVIKRLMT--DVPFGVLLSGGLDSSLVASIA-------ARHLAETKAAR-----QW--------------- 258 (578)
T ss_pred HHHHHHHHHHHHHHhcc--CCceeEeecCCccHHHHHHHH-------HHhhhhccccc-----cc---------------
Confidence 44555555555555543 256899999999999999998 34332100000 00
Q ss_pred hcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehH
Q 011602 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~ 448 (481)
...+++++.+...+ .+...|+++|+.+|..|+++.+.
T Consensus 259 -~~~l~tfsig~~~~--~D~~~Ar~vA~~lg~~h~ev~~~ 295 (578)
T PLN02549 259 -GQQLHSFCVGLEGS--PDLKAAREVADYLGTVHHEFHFT 295 (578)
T ss_pred -CCCceEEecCCCCC--CHHHHHHHHHHHhCCCCeEEEEC
Confidence 00146666554433 36779999999999999997664
No 94
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=97.70 E-value=0.0001 Score=78.61 Aligned_cols=82 Identities=26% Similarity=0.221 Sum_probs=50.7
Q ss_pred HhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhc
Q 011602 331 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (481)
Q Consensus 331 ~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 410 (481)
+...+...++.+++ ....+.+.||||+||+++|+++ .+..+ ...+
T Consensus 238 l~~~l~~aV~~r~~--~~~~vg~~LSGGlDSs~iaa~a-------~~~~~--~~~~------------------------ 282 (467)
T TIGR01536 238 LRSLLEDAVKRRLV--ADVPVGVLLSGGLDSSLVAAIA-------RREAP--RGPV------------------------ 282 (467)
T ss_pred HHHHHHHHHHHHhc--cCCceEEEecCChhHHHHHHHH-------HHhcC--CCCc------------------------
Confidence 33444334444443 2356889999999999999888 33321 0110
Q ss_pred ceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHH
Q 011602 411 RIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (481)
..+++.++. ...-.+...|+++|+.+|++|+++++++
T Consensus 283 -~~~t~~~~~-~~~~~E~~~A~~vA~~lg~~~~~i~~~~ 319 (467)
T TIGR01536 283 -HTFSIGFEG-SPDFDESPYARKVADHLGTEHHEVLFSV 319 (467)
T ss_pred -eEEEEecCC-CCCCChHHHHHHHHHHhCCcCeEEECCH
Confidence 024444552 1122335599999999999999999853
No 95
>PRK08576 hypothetical protein; Provisional
Probab=97.67 E-value=0.00017 Score=75.52 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=56.3
Q ss_pred hccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcc
Q 011602 332 AFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKR 411 (481)
Q Consensus 332 ~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (481)
...+..-..+++++.+-+++++++|||.||++++.++ .++.+ +
T Consensus 218 le~~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La-------~k~~~---~--------------------------- 260 (438)
T PRK08576 218 LEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLA-------KKAFG---D--------------------------- 260 (438)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHH-------HHhCC---C---------------------------
Confidence 3333334455677766568999999999999987777 44432 1
Q ss_pred eEEEEecCCCCCcHHhHHHHHHHHHHhCCceEE
Q 011602 412 IFYTVFMGSENSSQETRMLAKKLADEIGSWHLD 444 (481)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~ 444 (481)
+.++++.+....+.+.+.++++++.+|++++.
T Consensus 261 -V~aV~iDTG~e~pet~e~~~~lae~LGI~lii 292 (438)
T PRK08576 261 -VTAVYVDTGYEMPLTDEYVEKVAEKLGVDLIR 292 (438)
T ss_pred -CEEEEeCCCCCChHHHHHHHHHHHHcCCCEEE
Confidence 36777776666678899999999999999988
No 96
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=97.67 E-value=0.00016 Score=74.81 Aligned_cols=69 Identities=25% Similarity=0.307 Sum_probs=51.6
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCC-CCcHHh
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE-NSSQET 427 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (481)
.++++++|||+||++++.++ .+. | .+ ++++++.+. .+++.+
T Consensus 173 ~kvlvllSGGiDS~vaa~ll-------~kr-G--~~----------------------------V~av~~~~~~~~~~~~ 214 (371)
T TIGR00342 173 GKVLALLSGGIDSPVAAFMM-------MKR-G--CR----------------------------VVAVHFFNEPAASEKA 214 (371)
T ss_pred CeEEEEecCCchHHHHHHHH-------HHc-C--Ce----------------------------EEEEEEeCCCCccHHH
Confidence 57999999999999987777 222 2 22 577888754 345678
Q ss_pred HHHHHHHHHHh---C--CceEEeehHHHHHHHH
Q 011602 428 RMLAKKLADEI---G--SWHLDVSIDTVVSAFL 455 (481)
Q Consensus 428 ~~~a~~la~~l---g--~~~~~i~i~~~~~~~~ 455 (481)
.+.++++|+.+ | ++++.+|+.+.++.+.
T Consensus 215 ~~~v~~l~~~l~~~~~~~~l~~v~~~~~~~~i~ 247 (371)
T TIGR00342 215 REKVERLANSLNETGGSVKLYVFDFTDVQEEII 247 (371)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEeCHHHHHHHH
Confidence 88999999988 3 5888999887765443
No 97
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=97.66 E-value=0.00016 Score=78.49 Aligned_cols=91 Identities=23% Similarity=0.283 Sum_probs=52.9
Q ss_pred HHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhh
Q 011602 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (481)
Q Consensus 330 ~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~ 409 (481)
++...+...++.+|+. -..+.+-||||+||+++|+++. +..+ +... ..+....+.+
T Consensus 211 ~lr~~L~~aV~~rl~s--dvpvGv~LSGGLDSSlIaala~-------~~~~---~~~~-----~~~~~~~~~~------- 266 (554)
T PRK09431 211 ELRDALEAAVKKRLMS--DVPYGVLLSGGLDSSLISAIAK-------KYAA---RRIE-----DDERSEAWWP------- 266 (554)
T ss_pred HHHHHHHHHHHHHhcC--CCceEEEcCCCccHHHHHHHHH-------Hhhc---cccc-----ccccccccCC-------
Confidence 3444444444444442 2578899999999999999983 3321 1000 0000000000
Q ss_pred cceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehH
Q 011602 410 KRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~ 448 (481)
.+++++.....+ .+...|+++|+.||..|+++.+.
T Consensus 267 --~l~tfsig~~~~--~D~~~A~~vA~~lg~~h~~v~~t 301 (554)
T PRK09431 267 --QLHSFAVGLEGS--PDLKAAREVADHLGTVHHEIHFT 301 (554)
T ss_pred --CceEEEEeCCCC--ChHHHHHHHHHHhCCccEEEEeC
Confidence 035555443332 36789999999999999999873
No 98
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=97.66 E-value=0.00016 Score=66.86 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=45.8
Q ss_pred cEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCC--cHHh
Q 011602 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS--SQET 427 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 427 (481)
++++++|||+||++++.++ .+... + . +. .+.++++..... ++.+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~-------~~~~~---~--------~-~~---------------~v~~v~id~~~~~~~~~~ 46 (185)
T cd01992 1 KILVAVSGGPDSMALLHLL-------SELKP---R--------L-GL---------------RLVAVHVDHGLRPESDEE 46 (185)
T ss_pred CEEEEeCCCHHHHHHHHHH-------HHHHH---H--------c-CC---------------cEEEEEecCCCCchHHHH
Confidence 5899999999999988887 33321 1 0 00 067888875433 3578
Q ss_pred HHHHHHHHHHhCCceEEe
Q 011602 428 RMLAKKLADEIGSWHLDV 445 (481)
Q Consensus 428 ~~~a~~la~~lg~~~~~i 445 (481)
.+.++++|+.+|++++.+
T Consensus 47 ~~~~~~~~~~~~i~~~~~ 64 (185)
T cd01992 47 AAFVADLCAKLGIPLYIL 64 (185)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 999999999999999887
No 99
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=97.64 E-value=0.00018 Score=78.62 Aligned_cols=99 Identities=31% Similarity=0.317 Sum_probs=59.6
Q ss_pred HHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhh
Q 011602 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (481)
Q Consensus 329 ~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~ 408 (481)
+++...+...++.+|+. -..+.+.||||+|||++|+++. +..+++... .. ....
T Consensus 220 ~~lr~~L~~AV~~rl~s--dvpvGv~LSGGLDSSlIaala~-------~~~~~~~~~------~~--------~~~~--- 273 (586)
T PTZ00077 220 EEIREALEAAVRKRLMG--DVPFGLFLSGGLDSSIVAAIVA-------KLIKNGEID------LS--------KRGM--- 273 (586)
T ss_pred HHHHHHHHHHHHHHhcC--CCceEEEecCCchHHHHHHHHH-------Hhhcccccc------cc--------cccC---
Confidence 34555555555555553 2578999999999999999983 332200000 00 0000
Q ss_pred hcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeeh--HHHHHHHHHH
Q 011602 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSI--DTVVSAFLSL 457 (481)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i--~~~~~~~~~~ 457 (481)
..+++.+.....+ .+...|+++|+.||..|+++.+ ++..+.+.+.
T Consensus 274 --~~l~tfsig~~~~--~D~~~Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~ 320 (586)
T PTZ00077 274 --PKLHSFCIGLEGS--PDLKAARKVAEYLGTEHHEFTFTVEEGIDALPDV 320 (586)
T ss_pred --CCceEEEcCCCCC--chHHHHHHHHHHhCCcCcEEEECHHHHHHHHHHH
Confidence 0146666654333 4678999999999999988865 4444444433
No 100
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=97.64 E-value=0.00011 Score=75.81 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=47.2
Q ss_pred EEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHHH
Q 011602 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (481)
Q Consensus 351 ~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (481)
++|++|||+||++++.++ .+..+ .+ ++++++-..... ...+.
T Consensus 1 Vvva~SGGlDSsvll~~l-------~e~~~---~e---------------------------V~av~~d~Gq~~-~~~e~ 42 (385)
T cd01999 1 VVLAYSGGLDTSVILKWL-------KEKGG---YE---------------------------VIAVTADVGQPE-EEIEA 42 (385)
T ss_pred CEEEecCCHHHHHHHHHH-------HHhCC---Ce---------------------------EEEEEEECCCcc-hhHHH
Confidence 589999999999988777 44421 12 577777654322 33489
Q ss_pred HHHHHHHhCCc-eEEeehHHHHH
Q 011602 431 AKKLADEIGSW-HLDVSIDTVVS 452 (481)
Q Consensus 431 a~~la~~lg~~-~~~i~i~~~~~ 452 (481)
|+++|+.+|+. |+++|+.+.+.
T Consensus 43 a~~~a~~lG~~~~~viD~~~ef~ 65 (385)
T cd01999 43 IEEKALKLGAKKHVVVDLREEFV 65 (385)
T ss_pred HHHHHHHcCCCEEEEeccHHHHH
Confidence 99999999996 99999987554
No 101
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00028 Score=71.73 Aligned_cols=77 Identities=35% Similarity=0.437 Sum_probs=50.5
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
..+-+-||||+||+++|+++ .+++++ -+ ..+ +. .+++....-.+|+ +.
T Consensus 226 ~p~GvLLSGGLDSSLvAsia-------~R~lk~--~~----~~~--~~---------------~lhsFaIGle~SP--DL 273 (543)
T KOG0571|consen 226 VPFGVLLSGGLDSSLVASIA-------ARELKK--AQ----AAR--GS---------------KLHSFAIGLEDSP--DL 273 (543)
T ss_pred CceeEEeeCCchHHHHHHHH-------HHHHHH--hh----hhc--CC---------------CceEEEecCCCCh--hH
Confidence 56778899999999999999 455541 11 011 10 0344433333444 68
Q ss_pred HHHHHHHHHhCCceEEe--ehHHHHHHHHHH
Q 011602 429 MLAKKLADEIGSWHLDV--SIDTVVSAFLSL 457 (481)
Q Consensus 429 ~~a~~la~~lg~~~~~i--~i~~~~~~~~~~ 457 (481)
.+|+++|+.||..|+++ ++++-.+++.+.
T Consensus 274 ~aarkVAd~igt~Hhe~~ft~qegidal~eV 304 (543)
T KOG0571|consen 274 LAARKVADFIGTIHHEHTFTIQEGIDALDEV 304 (543)
T ss_pred HHHHHHHHHhCCcceEEEEcHHHHHHHHHHH
Confidence 89999999999999875 666666665543
No 102
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=97.54 E-value=0.00021 Score=79.03 Aligned_cols=81 Identities=21% Similarity=0.192 Sum_probs=50.3
Q ss_pred HhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhc
Q 011602 331 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAK 410 (481)
Q Consensus 331 ~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 410 (481)
+...+...+..+++. -..+.+.||||+||+++|+++ .+. . ...
T Consensus 243 l~~~l~~aV~~rl~~--d~~vg~~LSGGlDSs~Iaa~~-------~~~-~--~~~------------------------- 285 (628)
T TIGR03108 243 LIERLREAVRSRMVA--DVPLGAFLSGGVDSSAVVALM-------AGL-S--DTP------------------------- 285 (628)
T ss_pred HHHHHHHHHHHHHhc--CCcceEeecCCccHHHHHHHH-------HHh-c--CCC-------------------------
Confidence 333333334444432 246778899999999998887 232 1 111
Q ss_pred ceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHH
Q 011602 411 RIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTV 450 (481)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~ 450 (481)
+.++++....+...+...|+++|+.+|.+|+++.+++.
T Consensus 286 --i~t~s~~~~~~~~dE~~~A~~vA~~~g~~h~~~~~~~~ 323 (628)
T TIGR03108 286 --VNTCSIAFDDPAFDESAYARQVAERYGTNHRVETVDPD 323 (628)
T ss_pred --CcEEEEecCCCCCChHHHHHHHHHHhCCCCeEEecCHH
Confidence 23333322222234667899999999999999988743
No 103
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.49 E-value=0.00014 Score=67.41 Aligned_cols=66 Identities=20% Similarity=0.301 Sum_probs=41.2
Q ss_pred cEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecC--CCCCcHHh
Q 011602 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG--SENSSQET 427 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 427 (481)
+++||+|||.||.+++.++. +-......+ +.+++.- -...+...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~-------~~~~~~~~~---------------------------~~~~~vdh~~~~~s~~~ 46 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLK-------ELRRRNGIK---------------------------LIAVHVDHGLREESDEE 46 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHH-------HHHTTTTTE---------------------------EEEEEEE-STSCCHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHH-------HHHHhcCCC---------------------------eEEEEEecCCCcccchh
Confidence 58999999999998777772 221100001 4555543 23456677
Q ss_pred HHHHHHHHHHhCCceEEeehHH
Q 011602 428 RMLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 428 ~~~a~~la~~lg~~~~~i~i~~ 449 (481)
.+..+++|+.+|++++..+++.
T Consensus 47 ~~~v~~~~~~~~i~~~~~~~~~ 68 (182)
T PF01171_consen 47 AEFVEEICEQLGIPLYIVRIDE 68 (182)
T ss_dssp HHHHHHHHHHTT-EEEEEE--C
T ss_pred HHHHHHHHHhcCCceEEEEeee
Confidence 8889999999999999998874
No 104
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=97.47 E-value=0.0006 Score=62.29 Aligned_cols=62 Identities=24% Similarity=0.240 Sum_probs=42.4
Q ss_pred cEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHH
Q 011602 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (481)
++++++|||+||++++.++ .+. + .+ +.++++.....+..+.+
T Consensus 1 kvlv~~SGG~DS~~~~~~~-------~~~-~--~~----------------------------v~~~~~~~~~~~~~~~~ 42 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWA-------KKE-G--YE----------------------------VHALSFDYGQRHAKEEE 42 (169)
T ss_pred CEEEEecCcHHHHHHHHHH-------HHc-C--Cc----------------------------EEEEEEECCCCChhHHH
Confidence 5789999999999977776 232 2 21 46666654333445668
Q ss_pred HHHHHHHHhCCceEEeehHHH
Q 011602 430 LAKKLADEIGSWHLDVSIDTV 450 (481)
Q Consensus 430 ~a~~la~~lg~~~~~i~i~~~ 450 (481)
.++++++.+| ++..++....
T Consensus 43 ~~~~~~~~~g-~~~~~~~~~~ 62 (169)
T cd01995 43 AAKLIAEKLG-PSTYVPARNL 62 (169)
T ss_pred HHHHHHHHHC-CCEEEeCcCH
Confidence 9999999999 5555655543
No 105
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.45 E-value=0.0003 Score=77.10 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=51.9
Q ss_pred HHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhh
Q 011602 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (481)
Q Consensus 330 ~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~ 409 (481)
++...+...++.+++. -..+.+-||||+||+++|+++ .+. + ...
T Consensus 244 ~l~~~L~~AV~~rl~s--d~pvg~~LSGGlDSs~Iaa~~-------~~~-~--~~~------------------------ 287 (589)
T TIGR03104 244 AILEALRLAVKRRLVA--DVPVGVLLSGGLDSSLIVGLL-------AEA-G--VDG------------------------ 287 (589)
T ss_pred HHHHHHHHHHHHHhhc--CCceeEEecCCccHHHHHHHH-------HHh-c--CCC------------------------
Confidence 3444444445555533 367899999999999998887 222 2 111
Q ss_pred cceEEEEecCCCCCc---HHhHHHHHHHHHHhCCceEEeehH
Q 011602 410 KRIFYTVFMGSENSS---QETRMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 410 ~~~~~~~~~~~~~~~---~~~~~~a~~la~~lg~~~~~i~i~ 448 (481)
+.|++.....+. -.+...|+++|+.+|.+|+++.++
T Consensus 288 ---l~tftigf~~~~~~~~dE~~~A~~vA~~~g~~h~~i~~~ 326 (589)
T TIGR03104 288 ---LRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHKIRIP 326 (589)
T ss_pred ---ceEEEEEecCCCCCCCChHHHHHHHHHHhCCcCeEEEcC
Confidence 345444332221 235678999999999999998875
No 106
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=97.42 E-value=0.00052 Score=70.84 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=44.3
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
+++++++|||+||++.|.++ .+. |.+ +.++++- +++.+.
T Consensus 181 gkvlvllSGGiDSpVAa~ll-------~kr---G~~----------------------------V~~v~f~---~g~~~~ 219 (381)
T PRK08384 181 GKVVALLSGGIDSPVAAFLM-------MKR---GVE----------------------------VIPVHIY---MGEKTL 219 (381)
T ss_pred CcEEEEEeCChHHHHHHHHH-------HHc---CCe----------------------------EEEEEEE---eCHHHH
Confidence 67999999999999987777 222 233 5777773 446788
Q ss_pred HHHHHHHHHhC-------CceEEeehH
Q 011602 429 MLAKKLADEIG-------SWHLDVSID 448 (481)
Q Consensus 429 ~~a~~la~~lg-------~~~~~i~i~ 448 (481)
+.++++|+.|+ ++++.++..
T Consensus 220 e~v~~la~~L~~~~~~~~i~l~~v~~~ 246 (381)
T PRK08384 220 EKVRKIWNQLKKYHYGGKAELIVVKPQ 246 (381)
T ss_pred HHHHHHHHHhcccccCCcceEEEEChH
Confidence 99999999999 446666653
No 107
>PRK08349 hypothetical protein; Validated
Probab=97.40 E-value=0.00064 Score=64.00 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.9
Q ss_pred cEEEeccCChhHHHHHHHH
Q 011602 350 GFLLPLSGGADSSSVAAIV 368 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~ 368 (481)
++++++|||.||+++|.++
T Consensus 2 ~~vvllSGG~DS~v~~~~l 20 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLM 20 (198)
T ss_pred cEEEEccCChhHHHHHHHH
Confidence 6899999999999987776
No 108
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=97.35 E-value=0.00041 Score=63.96 Aligned_cols=19 Identities=42% Similarity=0.448 Sum_probs=17.2
Q ss_pred cEEEeccCChhHHHHHHHH
Q 011602 350 GFLLPLSGGADSSSVAAIV 368 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~ 368 (481)
++++++|||+||+++|.++
T Consensus 1 ~vlv~~SGG~DS~~la~ll 19 (177)
T cd01712 1 KALALLSGGIDSPVAAWLL 19 (177)
T ss_pred CEEEEecCChhHHHHHHHH
Confidence 4799999999999988887
No 109
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.34 E-value=0.00055 Score=64.18 Aligned_cols=72 Identities=22% Similarity=0.258 Sum_probs=48.7
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecC-CCCCcHHh
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG-SENSSQET 427 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 427 (481)
.++++-||||+||.+.+.++ +++|.+ +.++++- .+++++..
T Consensus 4 gk~l~LlSGGiDSpVAa~lm----------~krG~~----------------------------V~~l~f~~~~~~~~~~ 45 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLM----------MKRGCE----------------------------VIALHFDSPPFTGEKA 45 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHH----------HCBT-E----------------------------EEEEEEE-TTTSSCCC
T ss_pred ceEEEEecCCccHHHHHHHH----------HHCCCE----------------------------EEEEEEECCCCCCHHH
Confidence 46888899999999877777 333333 5777774 34556666
Q ss_pred HHHHHHHHHHh-------CCceEEeehHHHHHHHHHHH
Q 011602 428 RMLAKKLADEI-------GSWHLDVSIDTVVSAFLSLF 458 (481)
Q Consensus 428 ~~~a~~la~~l-------g~~~~~i~i~~~~~~~~~~~ 458 (481)
.+.++++++.+ .++++.+|+.+.+..+....
T Consensus 46 ~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~~~~ 83 (197)
T PF02568_consen 46 REKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEILRGV 83 (197)
T ss_dssp HHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHHhcC
Confidence 67777777665 36788899998887766543
No 110
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.34 E-value=0.00056 Score=65.41 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=20.8
Q ss_pred HhHHHHHHHHHHhCCceEEeehH
Q 011602 426 ETRMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 426 ~~~~~a~~la~~lg~~~~~i~i~ 448 (481)
...+.++.+|+.+|++|+.++++
T Consensus 43 ~~~~~~~~~A~~lgip~~~i~~~ 65 (218)
T TIGR03679 43 PNIELTRLQAEALGIPLVKIETS 65 (218)
T ss_pred CCHHHHHHHHHHhCCCEEEEECC
Confidence 46789999999999999999987
No 111
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=97.28 E-value=0.00041 Score=68.08 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=43.1
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
++++||+|||.||++++.++..+ .+..+ -. --+.+++.-....+ .+.
T Consensus 30 ~kilVa~SGG~DS~~LL~ll~~l----~~~~~---~~-------------------------~~l~av~vd~g~~~-~~~ 76 (258)
T PRK10696 30 DRVMVCLSGGKDSYTLLDILLNL----QKRAP---IN-------------------------FELVAVNLDQKQPG-FPE 76 (258)
T ss_pred CEEEEEecCCHHHHHHHHHHHHH----HHhCC---CC-------------------------eEEEEEEecCCCCC-CCH
Confidence 58999999999999887777321 11100 00 01566665432222 233
Q ss_pred HHHHHHHHHhCCceEEeehH
Q 011602 429 MLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~ 448 (481)
+.++++|+.+|++|++++++
T Consensus 77 ~~~~~~~~~lgI~~~v~~~~ 96 (258)
T PRK10696 77 HVLPEYLESLGVPYHIEEQD 96 (258)
T ss_pred HHHHHHHHHhCCCEEEEEec
Confidence 46789999999999988764
No 112
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=97.26 E-value=0.0015 Score=65.42 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=54.2
Q ss_pred HHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEec
Q 011602 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (481)
Q Consensus 339 l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (481)
|+..+.+ ++++++++|||.||++++.|+ .+++.. .. .| +..++.
T Consensus 20 Lrea~~~--f~~~vv~~SGGKDS~VLL~La-------~ka~~~--~~---------------~~----------~~vl~i 63 (301)
T PRK05253 20 LREVAAE--FENPVMLYSIGKDSSVMLHLA-------RKAFYP--GK---------------LP----------FPLLHV 63 (301)
T ss_pred HHHHHHh--CCCEEEEecCCHHHHHHHHHH-------HHhhcc--cC---------------CC----------eeEEEE
Confidence 3444444 378999999999999998888 566531 11 01 345666
Q ss_pred CCCCCcHHhHHHHHHHHHHhCCceEEeehHH
Q 011602 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 419 ~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (481)
-+....+++.+.+.++|+.+|++++++..++
T Consensus 64 DTG~~FpEt~ef~d~~a~~~gl~l~v~~~~~ 94 (301)
T PRK05253 64 DTGWKFPEMIEFRDRRAKELGLELIVHSNPE 94 (301)
T ss_pred eCCCCCHHHHHHHHHHHHHhCCCEEEEeChH
Confidence 6555567889999999999999999886654
No 113
>PRK13795 hypothetical protein; Provisional
Probab=97.19 E-value=0.0014 Score=72.44 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=61.3
Q ss_pred HHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhh
Q 011602 330 EIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFA 409 (481)
Q Consensus 330 ~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~ 409 (481)
++.......|+..+.+. -..+++++|||.||++++.|+ .++++ +
T Consensus 226 ~~~~~ai~~Ir~~~~~~-~~~v~Va~SGGKDS~vll~L~-------~~a~~---~------------------------- 269 (636)
T PRK13795 226 EKEKEAVNFIRGVAEKY-NLPVSVSFSGGKDSLVVLDLA-------REALK---D------------------------- 269 (636)
T ss_pred HHHHHHHHHHHHHHHHc-CCCEEEEecCcHHHHHHHHHH-------HHhCC---C-------------------------
Confidence 33444455666666555 357999999999999988888 45532 1
Q ss_pred cceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHH
Q 011602 410 KRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (481)
+..++.-+....++|.+.++++++.+|++++.++..+.+
T Consensus 270 ---~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~~~f 308 (636)
T PRK13795 270 ---FKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAGDAF 308 (636)
T ss_pred ---cEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcccHhH
Confidence 256666666666889999999999999999999876444
No 114
>PRK13794 hypothetical protein; Provisional
Probab=97.03 E-value=0.0033 Score=67.12 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=56.6
Q ss_pred cchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEE
Q 011602 336 GCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYT 415 (481)
Q Consensus 336 ~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (481)
...|+..+++.+ +.+++++|||.||++++.|+ .++++ .+ +..
T Consensus 236 ~~~i~~~~~~~~-~~v~vs~SGGKDS~v~L~L~-------~~~~~---~~---------------------------~~v 277 (479)
T PRK13794 236 IGFIRNTAEKIN-KPVTVAYSGGKDSLATLLLA-------LKALG---IN---------------------------FPV 277 (479)
T ss_pred HHHHHHHHHhcC-CCEEEEecchHHHHHHHHHH-------HHHhC---CC---------------------------eEE
Confidence 344555554444 67999999999999988888 55543 11 456
Q ss_pred EecCCCCCcHHhHHHHHHHHHHhCCceEEeehH
Q 011602 416 VFMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 416 ~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~ 448 (481)
+++-+....++|.+.++++++.+|++++.+..+
T Consensus 278 vfiDTG~efpet~e~i~~~~~~~gl~i~~~~~~ 310 (479)
T PRK13794 278 LFNDTGLEFPETLENVEDVEKHYGLEIIRTKSE 310 (479)
T ss_pred EEEECCCCChHHHHHHHHHHHhcCCcEEEEchH
Confidence 777666667899999999999999999888765
No 115
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=96.93 E-value=0.0023 Score=67.64 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=49.7
Q ss_pred hHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEe
Q 011602 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (481)
Q Consensus 338 ~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (481)
.|...+++. ++++||+|||.||.+++.++..+ .+. ..|. -+++++
T Consensus 7 ~l~~~l~~~--~~ilvavSGG~DS~~Ll~~l~~~----~~~-~~~~----------------------------~l~a~h 51 (436)
T PRK10660 7 TLNRQLLTS--RQILVAFSGGLDSTVLLHLLVQW----RTE-NPGV----------------------------TLRAIH 51 (436)
T ss_pred HHHHhcCCC--CeEEEEecCCHHHHHHHHHHHHH----HHh-cCCC----------------------------eEEEEE
Confidence 344555543 78999999999999877766321 000 0000 056666
Q ss_pred cCCCC--CcHHhHHHHHHHHHHhCCceEEeehH
Q 011602 418 MGSEN--SSQETRMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 418 ~~~~~--~~~~~~~~a~~la~~lg~~~~~i~i~ 448 (481)
.-... .++...+.++++|+.+|++|+.++++
T Consensus 52 vnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~ 84 (436)
T PRK10660 52 VHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQ 84 (436)
T ss_pred EeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 65322 34555678999999999999988765
No 116
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=0.0024 Score=63.74 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=50.7
Q ss_pred HHHHHcCC--CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEec
Q 011602 341 DYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (481)
Q Consensus 341 ~~l~~~~~--~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (481)
..+++.+. .+++||+|||-||++++.++ .+ ++ .. + .+.+++.
T Consensus 12 ~~i~~~~~~~~~ilVavSGGkDS~~ll~~L-------~~-l~--~~-~-------------------------~~~a~~V 55 (298)
T COG0037 12 RAIREFNLIEYKILVAVSGGKDSLALLHLL-------KE-LG--RR-I-------------------------EVEAVHV 55 (298)
T ss_pred HHHHhccccCCeEEEEeCCChHHHHHHHHH-------HH-hc--cC-c-------------------------eEEEEEe
Confidence 33444444 79999999999999887777 22 22 10 0 0345555
Q ss_pred CCCC--CcHHhHHHHHHHHHHhCCceEEeehHHHH
Q 011602 419 GSEN--SSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 419 ~~~~--~~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (481)
.-.. .+......++++|+.+|+++.+.+++..+
T Consensus 56 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 90 (298)
T COG0037 56 DHGLRGYSDQEAELVEKLCEKLGIPLIVERVTDDL 90 (298)
T ss_pred cCCCCCccchHHHHHHHHHHHhCCceEEEEEEeec
Confidence 4322 23778889999999999988888776544
No 117
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=96.83 E-value=0.0054 Score=55.78 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=46.4
Q ss_pred cEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHH
Q 011602 350 GFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRM 429 (481)
Q Consensus 350 ~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (481)
.++|++|||-||++++.|+ .++.. + +..++.-+....++|.+
T Consensus 1 ~i~vs~SGGKDS~v~l~l~-------~~~~~---~----------------------------~~vv~~dtg~e~p~t~~ 42 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLA-------REAGR---K----------------------------VPVVFIDTGYEFPETYE 42 (174)
T ss_dssp SEEEE--SSHHHHHHHHHH-------HHHHT---T----------------------------CEEEEEE-STB-HHHHH
T ss_pred CeEEEecCCHHHHHHHHHH-------HHhcC---C----------------------------CcEEEEecCccCHHHHH
Confidence 4789999999999988888 55542 1 23455655567889999
Q ss_pred HHHHHHHHhCCceEEeehHHHHH
Q 011602 430 LAKKLADEIGSWHLDVSIDTVVS 452 (481)
Q Consensus 430 ~a~~la~~lg~~~~~i~i~~~~~ 452 (481)
.++++++.+|++...+.....+.
T Consensus 43 ~~~~~~~~~~~~i~~~~~~~~~~ 65 (174)
T PF01507_consen 43 FVDELAKRYGIPIIVYRPPETFE 65 (174)
T ss_dssp HHHHHHHHTTCEEEEEETTSHHH
T ss_pred HHHHHHhhhhhhhhhcccccchh
Confidence 99999999999977776655444
No 118
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=96.83 E-value=0.0028 Score=68.75 Aligned_cols=81 Identities=28% Similarity=0.284 Sum_probs=52.2
Q ss_pred HHhccccchHHHHHHHcC--CCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHh
Q 011602 330 EIAFGPGCWLWDYLRRSG--ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (481)
Q Consensus 330 ~~~~~~~~~l~~~l~~~~--~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 407 (481)
+....+..-|.+-+++.- -..+.+-||||+|||++|+++ .+... .+.
T Consensus 210 ~~~~~l~~~l~~sV~~r~~advpvg~~lSGGlDSS~Iaa~a-------~~~~~---~~~--------------------- 258 (542)
T COG0367 210 ELAEHLRSLLEDAVKRRLVADVPVGVFLSGGLDSSLIAAIA-------AEELG---KEG--------------------- 258 (542)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcEEEEeCCCccHHHHHHHH-------HHhcc---ccc---------------------
Confidence 333334444444444432 467888899999999999999 34321 110
Q ss_pred hhcceE--EEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehH
Q 011602 408 FAKRIF--YTVFMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 408 ~~~~~~--~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~ 448 (481)
. +++-++. +...+...|+++|+.||.+|+.+.+.
T Consensus 259 -----~~~fsvg~~~--~~~~D~~~a~~~A~~lg~~h~~~~~~ 294 (542)
T COG0367 259 -----KTTFTVGFED--SDSPDAKYARAVAKFLGTPHHEIILT 294 (542)
T ss_pred -----eeeeEeecCC--CCCchHHHHHHHHHHhCCCcEEEeec
Confidence 1 3454443 32347789999999999998877664
No 119
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0068 Score=62.21 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=49.8
Q ss_pred ccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEE
Q 011602 335 PGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFY 414 (481)
Q Consensus 335 ~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (481)
...|+++++- ..++++.+|||+||+++++|. .+|++ +++ ++
T Consensus 220 ~I~~i~k~vG---~~~Vl~~vSGgvdStV~a~Ll-------~~alg--~~R---------------------------~~ 260 (552)
T KOG1622|consen 220 CINEIRKWVG---DYKVLVAVSGGVDSTVCAALL-------RRALG--PDR---------------------------VH 260 (552)
T ss_pred HHHHHHHHhc---ccceEEEecCCchHHHHHHHH-------HHhhC--CCc---------------------------eE
Confidence 3356666664 579999999999999999999 78886 555 46
Q ss_pred EEecCCCCCcHHhHHHHH-HHHHHhCCceEEeehHHHH
Q 011602 415 TVFMGSENSSQETRMLAK-KLADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 415 ~~~~~~~~~~~~~~~~a~-~la~~lg~~~~~i~i~~~~ 451 (481)
++....-.--.......+ .|.+ ||++...+|-.+-|
T Consensus 261 ai~vdNG~mrk~Ea~~V~~tl~~-lgi~i~v~~as~~f 297 (552)
T KOG1622|consen 261 AIHVDNGFMRKKEAEQVEKTLVY-LGIPITVVDASETF 297 (552)
T ss_pred EEEecccchhhhHHHHHHHHHHH-cCCceEEeechHHH
Confidence 665542211111112222 2344 89999888877433
No 120
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=96.62 E-value=0.0085 Score=58.23 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=54.9
Q ss_pred HHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEec
Q 011602 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (481)
Q Consensus 339 l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (481)
|+.-+.+.+ +++++++|||-||++++.|+ .+. + .+ +..+++
T Consensus 32 i~~a~~~~~-~~i~vs~SGGKDS~vlL~L~-------~~~-~--~~----------------------------i~vvfi 72 (241)
T PRK02090 32 LAWALENFG-GRLALVSSFGAEDAVLLHLV-------AQV-D--PD----------------------------IPVIFL 72 (241)
T ss_pred HHHHHHHcC-CCEEEEecCCHHHHHHHHHH-------Hhc-C--CC----------------------------CcEEEe
Confidence 444455555 45999999999999988887 232 1 11 357788
Q ss_pred CCCCCcHHhHHHHHHHHHHhCCceEEeehHH
Q 011602 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 419 ~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (481)
-+-...++|.+.++++++.+|++++++..+.
T Consensus 73 DTG~~~pet~e~~~~~~~~~gl~l~v~~~~~ 103 (241)
T PRK02090 73 DTGYLFPETYRFIDELTERLLLNLKVYRPDA 103 (241)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 7766788999999999999999999887653
No 121
>PRK08557 hypothetical protein; Provisional
Probab=96.56 E-value=0.013 Score=61.31 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=57.5
Q ss_pred HHhccccchHHHHHHHcCC--CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHh
Q 011602 330 EIAFGPGCWLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (481)
Q Consensus 330 ~~~~~~~~~l~~~l~~~~~--~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 407 (481)
++.......|+..+++.+- ..+++++|||-||++++.|+ .++. .+
T Consensus 161 ~~e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~-------~~~~---~~----------------------- 207 (417)
T PRK08557 161 KLEENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLA-------KEVI---PD----------------------- 207 (417)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHH-------HHhC---CC-----------------------
Confidence 3444445556666666654 35789999999999987776 3332 11
Q ss_pred hhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehH
Q 011602 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~ 448 (481)
+..++.-+....++|.+.++++++.+|+++..+.-+
T Consensus 208 -----i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~~ 243 (417)
T PRK08557 208 -----LEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDGD 243 (417)
T ss_pred -----CEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEech
Confidence 345666655556889999999999999999988754
No 122
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=96.50 E-value=0.0054 Score=51.19 Aligned_cols=18 Identities=50% Similarity=0.756 Sum_probs=16.0
Q ss_pred EEEeccCChhHHHHHHHH
Q 011602 351 FLLPLSGGADSSSVAAIV 368 (481)
Q Consensus 351 ~~l~lSGG~DSa~~a~l~ 368 (481)
++|++|||+||++++.++
T Consensus 1 v~v~~SGG~DS~~ll~~l 18 (103)
T cd01986 1 VLVAFSGGKDSSVAAALL 18 (103)
T ss_pred CEEEEeCcHHHHHHHHHH
Confidence 589999999999987777
No 123
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=96.43 E-value=0.01 Score=60.26 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=49.1
Q ss_pred CCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHh
Q 011602 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (481)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (481)
.++++|++|||+|+|++.... .+..+ .. ++|++.-- ..++.+
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL-------~e~~~---~e---------------------------Via~tadv-GQ~eed 45 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWL-------KEKGG---AE---------------------------VIAVTADV-GQPEED 45 (403)
T ss_pred CcEEEEEecCCccHHHHHHHH-------HHhcC---ce---------------------------EEEEEEeC-CCChHH
Confidence 478999999999999865544 33321 11 57776643 334689
Q ss_pred HHHHHHHHHHhCCc-eEEeehHHHH
Q 011602 428 RMLAKKLADEIGSW-HLDVSIDTVV 451 (481)
Q Consensus 428 ~~~a~~la~~lg~~-~~~i~i~~~~ 451 (481)
.+.+++=|..+|+. |+++|..+-|
T Consensus 46 ~~~i~eKA~~~Ga~~~~viD~reeF 70 (403)
T COG0137 46 LDAIREKALELGAEEAYVIDAREEF 70 (403)
T ss_pred hHHHHHHHHHhCCceEEEeecHHHH
Confidence 99999999999997 9999997544
No 124
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=96.36 E-value=0.011 Score=63.48 Aligned_cols=68 Identities=21% Similarity=0.340 Sum_probs=44.5
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCC-CCcH-H
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE-NSSQ-E 426 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 426 (481)
.++++.||||+||++++.++ ++.|.+ ++++++-+. .++. .
T Consensus 178 gk~lvllSGGiDS~va~~~~----------~krG~~----------------------------v~~l~f~~g~~~~~~~ 219 (482)
T PRK01269 178 EDVLSLISGGFDSGVASYML----------MRRGSR----------------------------VHYCFFNLGGAAHEIG 219 (482)
T ss_pred CeEEEEEcCCchHHHHHHHH----------HHcCCE----------------------------EEEEEEecCCchhHHH
Confidence 57999999999999977776 121222 466766432 2222 2
Q ss_pred hHHHHHHHHHHhC----CceEEeehHHHHHHH
Q 011602 427 TRMLAKKLADEIG----SWHLDVSIDTVVSAF 454 (481)
Q Consensus 427 ~~~~a~~la~~lg----~~~~~i~i~~~~~~~ 454 (481)
..+.|+++++.++ ++++++|+.+.+.++
T Consensus 220 ~~~~a~~l~~~~~~~~~~~l~~v~~~~~~~~i 251 (482)
T PRK01269 220 VKQVAHYLWNRYGSSHRVRFISVDFEPVVGEI 251 (482)
T ss_pred HHHHHHHHHHHhCccCCceEEEEecHHHHHHH
Confidence 5677888887776 457788877655533
No 125
>PRK05370 argininosuccinate synthase; Validated
Probab=96.32 E-value=0.011 Score=61.59 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=46.4
Q ss_pred CCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHH
Q 011602 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE 426 (481)
Q Consensus 347 ~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (481)
+-++++|++|||+||++++.-. .+. |.+ ++|++.---....+
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL-------~e~---~~e----------------------------Via~~aDvGQ~~~e 51 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWM-------RQK---GAV----------------------------PYAYTANLGQPDED 51 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHH-------Hhc---CCe----------------------------EEEEEEECCCCCcc
Confidence 3478999999999999865544 222 122 46665542111135
Q ss_pred hHHHHHHHHHHhCC-ceEEeehHHHH
Q 011602 427 TRMLAKKLADEIGS-WHLDVSIDTVV 451 (481)
Q Consensus 427 ~~~~a~~la~~lg~-~~~~i~i~~~~ 451 (481)
+.+.+++-|..+|+ +++++|..+.|
T Consensus 52 d~~~i~~kA~~~GA~~~~viDlr~eF 77 (447)
T PRK05370 52 DYDAIPRRAMEYGAENARLIDCRAQL 77 (447)
T ss_pred chHHHHHHHHHhCCCEEEEeccHHHH
Confidence 78899999999999 69999997443
No 126
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=96.27 E-value=0.012 Score=56.17 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=20.4
Q ss_pred HHhHHHHHHHHHHhCCceEEeehHH
Q 011602 425 QETRMLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 425 ~~~~~~a~~la~~lg~~~~~i~i~~ 449 (481)
....+.++..|+.+|++++.+.+..
T Consensus 44 ~~~~~~~~~qA~algiPl~~~~~~~ 68 (222)
T TIGR00289 44 SPNLHLTDLVAEAVGIPLIKLYTSG 68 (222)
T ss_pred cCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 3456789999999999998887754
No 127
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=96.13 E-value=0.011 Score=60.93 Aligned_cols=63 Identities=22% Similarity=0.270 Sum_probs=40.7
Q ss_pred EEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHHHH
Q 011602 352 LLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLA 431 (481)
Q Consensus 352 ~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 431 (481)
||++|||+||+++.... .+. |..+ ++|++.-. ..++++.+.+
T Consensus 1 VLAySGGLDTS~~l~~L-------~e~---~~~~---------------------------Via~~aDl-Gq~~~d~~~i 42 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWL-------KEE---GGYE---------------------------VIAVTADL-GQPDEDLEAI 42 (388)
T ss_dssp EEE--SSHHHHHHHHHH-------HHT---TTEE---------------------------EEEEEEES-SST-S-HHHH
T ss_pred CeeeCCChHHHHHHHHH-------Hhh---cCce---------------------------EEEEEEEC-CCcHHHHHHH
Confidence 68999999999865555 232 1122 57776653 3345788999
Q ss_pred HHHHHHhCC-ceEEeehHHHHH
Q 011602 432 KKLADEIGS-WHLDVSIDTVVS 452 (481)
Q Consensus 432 ~~la~~lg~-~~~~i~i~~~~~ 452 (481)
++-|..+|+ +|+++|..+.|-
T Consensus 43 ~~kA~~~Ga~~~~vvD~r~ef~ 64 (388)
T PF00764_consen 43 EEKALKLGASKHIVVDARDEFA 64 (388)
T ss_dssp HHHHHHHT-SEEEEEE-HHHHH
T ss_pred HHHHHhcCCceeeecchHHHHH
Confidence 999999999 999999985443
No 128
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=95.98 E-value=0.037 Score=55.13 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=50.3
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
++.++++|||-||++++-|+ .+++.++ . .| +..++.-+-..-+++.
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa-------~kaf~~~--~---------------~p----------~~vl~IDTG~~F~Et~ 65 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLA-------RKAFYPG--P---------------LP----------FPLLHVDTGWKFREMI 65 (294)
T ss_pred CCcEEEEecChHHHHHHHHH-------HHHhccc--C---------------CC----------eEEEEEecCCCCHHHH
Confidence 45688999999999988888 5665311 1 11 4567776655567799
Q ss_pred HHHHHHHHHhCCceEEeehHH
Q 011602 429 MLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~~ 449 (481)
+...++|+.+|+++++..-++
T Consensus 66 efrd~~a~~~gl~l~v~~~~~ 86 (294)
T TIGR02039 66 AFRDHMVAKYGLRLIVHSNEE 86 (294)
T ss_pred HHHHHHHHHhCCCEEEEechh
Confidence 999999999999999876654
No 129
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=95.78 E-value=0.011 Score=55.00 Aligned_cols=56 Identities=25% Similarity=0.202 Sum_probs=38.6
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
.++++++|||+|||.++.++ .++ + -.. .| .+..|| +.-+
T Consensus 61 ~kiaVA~SGG~DSsas~iil-------R~~-g--~~v---------------~p-----------~t~~Lp-----~~ir 99 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIIL-------RWA-G--FTV---------------DP-----------GTAILP-----DHIR 99 (255)
T ss_pred ceEEEEecCCcchHHHHHHH-------Hhh-c--eee---------------cc-----------ccccCC-----HHHh
Confidence 57999999999999987777 333 2 110 11 234454 3667
Q ss_pred HHHHHHHHHhCCceEEe
Q 011602 429 MLAKKLADEIGSWHLDV 445 (481)
Q Consensus 429 ~~a~~la~~lg~~~~~i 445 (481)
.++++++..||..+.-+
T Consensus 100 ~n~~~l~~~lg~~p~yv 116 (255)
T COG1365 100 RNKEELETLLGEVPEYV 116 (255)
T ss_pred HHHHHHHHHHccCHHHH
Confidence 79999999999975443
No 130
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=95.56 E-value=0.052 Score=55.78 Aligned_cols=72 Identities=28% Similarity=0.307 Sum_probs=53.4
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecC-CCCCcHHh
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMG-SENSSQET 427 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 427 (481)
.++++-||||+||-+.+.++ ++.|.+ ++.+++. ..++++..
T Consensus 176 Gk~l~LlSGGIDSPVA~~l~----------mkRG~~----------------------------v~~v~f~~~p~~~~~a 217 (383)
T COG0301 176 GKVLLLLSGGIDSPVAAWLM----------MKRGVE----------------------------VIPVHFGNPPYTSEKA 217 (383)
T ss_pred CcEEEEEeCCCChHHHHHHH----------HhcCCE----------------------------EEEEEEcCCCCchHHH
Confidence 46888899999999987777 443443 4667763 34778888
Q ss_pred HHHHHHHH-HHhC-----CceEEeehHHHHHHHHHHH
Q 011602 428 RMLAKKLA-DEIG-----SWHLDVSIDTVVSAFLSLF 458 (481)
Q Consensus 428 ~~~a~~la-~~lg-----~~~~~i~i~~~~~~~~~~~ 458 (481)
...+..|+ ..+. ++++.+|..++.+.+....
T Consensus 218 ~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i~~~~ 254 (383)
T COG0301 218 REKVVALALLRLTSYGGKVRLYVVPFTEVQEEILEKV 254 (383)
T ss_pred HHHHHHHHhhhhcccCCceEEEEEchHHHHHHHHhhc
Confidence 88888888 5553 4678889998888887654
No 131
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=95.56 E-value=0.076 Score=53.28 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=51.2
Q ss_pred CCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHh
Q 011602 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (481)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (481)
+++.+++.|||-||++++-|+ .+++.+ .. .| +-.++.-+-..-++|
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa-------~kaf~~--~~---------------~~----------~pvl~VDTG~~FpEt 82 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLA-------MKAFRP--TR---------------PP----------FPLLHVDTTWKFREM 82 (312)
T ss_pred cCCcEEEecCChHHHHHHHHH-------HHhhcc--cC---------------CC----------eeEEEeCCCCCCHHH
Confidence 467899999999999988888 566531 11 01 456777777778899
Q ss_pred HHHHHHHHHHhCCceEEeehH
Q 011602 428 RMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 428 ~~~a~~la~~lg~~~~~i~i~ 448 (481)
.+...++++.+|+++++..-.
T Consensus 83 ~efrD~~a~~~gl~Liv~~~~ 103 (312)
T PRK12563 83 IDFRDRRAKELGLDLVVHHNP 103 (312)
T ss_pred HHHHHHHHHHhCCcEEEecCh
Confidence 999999999999998876433
No 132
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=95.28 E-value=0.11 Score=49.21 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=47.7
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
.++++++|||-||++++-|+ .+.. ++ +..+++-+...-++|.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~-------~~~~---~~----------------------------~~v~f~DTg~efpeT~ 55 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLV-------SKIS---PD----------------------------IPVIFLDTGYHFPETY 55 (212)
T ss_pred CCEEEEecCCHHHHHHHHHH-------HhcC---CC----------------------------CcEEEecCCCCCHHHH
Confidence 47999999999999987777 3332 11 2456887777788999
Q ss_pred HHHHHHHHHhCCceEEeehH
Q 011602 429 MLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~ 448 (481)
+..+++++.+|.+...+.-+
T Consensus 56 efv~~~~~~~~l~i~~~~~~ 75 (212)
T TIGR00434 56 ELIDELTERYPLNIKVYKPD 75 (212)
T ss_pred HHHHHHHHHhCCceEEECCc
Confidence 99999999999877666443
No 133
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=94.91 E-value=0.054 Score=48.44 Aligned_cols=58 Identities=29% Similarity=0.332 Sum_probs=41.6
Q ss_pred EEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHHH
Q 011602 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (481)
Q Consensus 351 ~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (481)
+-+-+|||-||++.|.+. +-+| ++-- +.+|+..-.. +.+-
T Consensus 3 v~vLfSGGKDSSLaA~iL--------~klg--yev~--------------------------LVTvnFGv~d----~~k~ 42 (198)
T COG2117 3 VYVLFSGGKDSSLAALIL--------DKLG--YEVE--------------------------LVTVNFGVLD----SWKY 42 (198)
T ss_pred eEEEecCCCchhHHHHHH--------HHhC--CCcE--------------------------EEEEEecccc----chhh
Confidence 456799999999855554 5565 3320 5677665432 4578
Q ss_pred HHHHHHHhCCceEEeehH
Q 011602 431 AKKLADEIGSWHLDVSID 448 (481)
Q Consensus 431 a~~la~~lg~~~~~i~i~ 448 (481)
|++-|+.||.+|+++.++
T Consensus 43 A~~tA~~lgF~h~vl~Ld 60 (198)
T COG2117 43 ARETAAILGFPHEVLQLD 60 (198)
T ss_pred HHHHHHHhCCCcceeccC
Confidence 899999999999999875
No 134
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=94.81 E-value=0.2 Score=48.20 Aligned_cols=61 Identities=10% Similarity=0.046 Sum_probs=46.0
Q ss_pred CCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHh
Q 011602 348 ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQET 427 (481)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (481)
-+.++++.|||.||+|++-|+ .++.+ + . +-.++.-+-..-++|
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~-------~~~~~--~-~---------------------------i~vv~vDTg~~fpET 67 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLL-------SSISE--P-M---------------------------IPVIFIDTLYHFPQT 67 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHH-------HHhhC--C-C---------------------------CCEEEEeCCCCCHHH
Confidence 357999999999999988888 34421 1 1 246777777778899
Q ss_pred HHHHHHHHHHhC--CceEEe
Q 011602 428 RMLAKKLADEIG--SWHLDV 445 (481)
Q Consensus 428 ~~~a~~la~~lg--~~~~~i 445 (481)
.+.++++++.+| ++....
T Consensus 68 ~e~~d~~~~~~~~~l~v~~~ 87 (226)
T TIGR02057 68 LTLKDELTKKYYQTLNLYKY 87 (226)
T ss_pred HHHHHHHHHHhCCceEEEEe
Confidence 999999999999 444444
No 135
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=93.73 E-value=0.27 Score=39.21 Aligned_cols=54 Identities=28% Similarity=0.326 Sum_probs=35.6
Q ss_pred EEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHHH
Q 011602 351 FLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRML 430 (481)
Q Consensus 351 ~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (481)
+++++|||.||+.++.++. +... ...+ +++++.. .-.+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~-------~~~~-~~~~---------------------------~~~~~~~------~~~~~ 39 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAK-------RLKS-GGPE---------------------------VVALVVV------AFVRI 39 (86)
T ss_pred CEEEeeCCHHHHHHHHHHH-------HHHh-cCCC---------------------------EEEEEeH------HHHHH
Confidence 5899999999998777772 2201 0111 4556554 55667
Q ss_pred HHHHHHHhCCceEEe
Q 011602 431 AKKLADEIGSWHLDV 445 (481)
Q Consensus 431 a~~la~~lg~~~~~i 445 (481)
..+.|++.|+++...
T Consensus 40 ~~~~a~~~~~~~Iv~ 54 (86)
T cd01984 40 LKRLAAEEGADVIIL 54 (86)
T ss_pred HHHHHHHcCCCEEEE
Confidence 788899899886544
No 136
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=93.68 E-value=0.16 Score=50.01 Aligned_cols=68 Identities=25% Similarity=0.341 Sum_probs=45.6
Q ss_pred CCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHH
Q 011602 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE 426 (481)
Q Consensus 347 ~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (481)
+.+.+||+.|||+|+++.++-. .+ +|++ ..+||.... .++
T Consensus 4 ~~~~vVLAySGgLDTscil~WL-------ke---qGye-----------------------------Viay~AnvG-Q~e 43 (412)
T KOG1706|consen 4 SKKSVVLAYSGGLDTSCILAWL-------KE---QGYE-----------------------------VIAYLANVG-QKE 43 (412)
T ss_pred CCceEEEEecCCcCchhhhHHH-------Hh---cCce-----------------------------EEEeecccc-chh
Confidence 4478999999999998543333 22 2454 356787654 488
Q ss_pred hHHHHHHHHHHhCCceEEeehHHHHHHHHH
Q 011602 427 TRMLAKKLADEIGSWHLDVSIDTVVSAFLS 456 (481)
Q Consensus 427 ~~~~a~~la~~lg~~~~~i~i~~~~~~~~~ 456 (481)
+.+.|++=|..+|++-..+ +++-+.|++
T Consensus 44 dfe~ar~kAlk~Gakk~~~--ed~~~eFve 71 (412)
T KOG1706|consen 44 DFEEARKKALKSGAKKVVV--EDVREEFVE 71 (412)
T ss_pred hHHHHHHhhhhcCceEEEe--hhhhHHHHh
Confidence 9999999999999974332 333344443
No 137
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.49 E-value=0.39 Score=47.22 Aligned_cols=68 Identities=24% Similarity=0.298 Sum_probs=52.3
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
..++++.|||.||++++.|+ .+++. . +..++.-+..--++|.
T Consensus 40 ~~~~~~~S~Gkds~V~l~L~-------~k~~~---~----------------------------~~vif~DTg~~f~Et~ 81 (261)
T COG0175 40 NPVVVSFSGGKDSTVLLHLA-------AKAFP---D----------------------------FPVIFLDTGYHFPETY 81 (261)
T ss_pred CCeEEEecCchhHHHHHHHH-------HHhcC---C----------------------------CcEEEEeCCCcCHHHH
Confidence 45799999999999999888 56542 1 2456677767788999
Q ss_pred HHHHHHHHHhCCceEEeehHHHHHHH
Q 011602 429 MLAKKLADEIGSWHLDVSIDTVVSAF 454 (481)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~~~~~~~ 454 (481)
+.+.++++.+|++..+..-++.+..-
T Consensus 82 ~~~d~~~~~~~~~l~~~~~~~~~~~~ 107 (261)
T COG0175 82 EFRDRLAEEYGLDLKVYRPDDEVAEG 107 (261)
T ss_pred HHHHHHHHHcCCeEEEecCccchhhh
Confidence 99999999999888777666444433
No 138
>PRK06850 hypothetical protein; Provisional
Probab=90.01 E-value=1.5 Score=47.09 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=25.3
Q ss_pred HhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHH
Q 011602 331 IAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVG 369 (481)
Q Consensus 331 ~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~ 369 (481)
....+...+++-... .-..++||+|||=||++++.|+.
T Consensus 18 ~~~~~i~~i~~~Y~~-~~~P~vV~fSGGKDStavL~Lv~ 55 (507)
T PRK06850 18 PIEELIEEIQELYCA-DNRPWVIGYSGGKDSTAVLQLVW 55 (507)
T ss_pred HHHHHHHHHHHHHhc-CCCCeEEeCCCCchHHHHHHHHH
Confidence 333344444443222 23568999999999999999983
No 139
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=89.42 E-value=1.1 Score=47.31 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=18.6
Q ss_pred CcEEEeccCChhHHHHHHHH
Q 011602 349 SGFLLPLSGGADSSSVAAIV 368 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~ 368 (481)
..++||+|||=||++++.|+
T Consensus 14 ~p~vV~fSGGKDSta~L~Lv 33 (447)
T TIGR03183 14 IPWVVGYSGGKDSTAVLQLI 33 (447)
T ss_pred CceEEEeCCCHHHHHHHHHH
Confidence 56899999999999999998
No 140
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=89.31 E-value=1.1 Score=42.93 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHhCCceEEeehH
Q 011602 427 TRMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 427 ~~~~a~~la~~lg~~~~~i~i~ 448 (481)
..+..+..|+.+|+++..++.+
T Consensus 46 ~~~~~~~qA~algipl~~~~~~ 67 (223)
T TIGR00290 46 NAHLTDLQAESIGIPLIKLYTE 67 (223)
T ss_pred CHHHHHHHHHHcCCCeEEeecC
Confidence 4577888999999998876654
No 141
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=87.45 E-value=2 Score=40.82 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHh
Q 011602 427 TRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTL 461 (481)
Q Consensus 427 ~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~ 461 (481)
..+.+..+|+.+|+++.....+-.-+.-.+.+..+
T Consensus 47 n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~L~~~ 81 (223)
T COG2102 47 NLELAELQAEAMGIPLVTFDTSGEEEREVEELKEA 81 (223)
T ss_pred chHHHHHHHHhcCCceEEEecCccchhhHHHHHHH
Confidence 45688899999999999988876444344444333
No 142
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=85.60 E-value=0.97 Score=43.18 Aligned_cols=35 Identities=9% Similarity=0.104 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHhh
Q 011602 428 RMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLT 462 (481)
Q Consensus 428 ~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~ 462 (481)
.+..+..|+.+|+++..+.++..-+.+.+.+.+++
T Consensus 47 ~~~~~~qA~algipl~~~~~~g~~~~~~~~l~~~l 81 (218)
T PF01902_consen 47 IELIEAQAEALGIPLIEIPTSGDEEDYVEDLKEAL 81 (218)
T ss_dssp GTCHHHHHHHHT--EEEEEE---CCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEccCccchhhHHHHHHH
Confidence 55778889999999999888743344445554444
No 143
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=83.89 E-value=0.73 Score=47.87 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.2
Q ss_pred CCcEEEeccCChhHHHHHHHH
Q 011602 348 ASGFLLPLSGGADSSSVAAIV 368 (481)
Q Consensus 348 ~~~~~l~lSGG~DSa~~a~l~ 368 (481)
-..+.|-+|||+||+++|.++
T Consensus 250 ~s~VcVlfSGGvDs~vvA~l~ 270 (520)
T KOG0573|consen 250 ESNVCVLFSGGVDSTVVAVLA 270 (520)
T ss_pred cCcEEEEecCCchHHHHHHHH
Confidence 368999999999999999998
No 144
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=77.84 E-value=4.5 Score=40.78 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.5
Q ss_pred cCCCcEEEeccCChhHHHHHHHHHH
Q 011602 346 SGASGFLLPLSGGADSSSVAAIVGC 370 (481)
Q Consensus 346 ~~~~~~~l~lSGG~DSa~~a~l~~~ 370 (481)
+.+..+.|++|||-||+|.+-|+..
T Consensus 25 ~~f~~VcVSFSGGKDS~lmLhL~~~ 49 (407)
T COG3969 25 NTFPRVCVSFSGGKDSGLMLHLVAE 49 (407)
T ss_pred hcCCeEEEEecCCCchhHHHHHHHH
Confidence 4578999999999999998888843
No 145
>PLN02309 5'-adenylylsulfate reductase
Probab=63.34 E-value=30 Score=36.86 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=26.8
Q ss_pred EEecCCCCCcHHhHHHHHHHHHHhCCceEEe
Q 011602 415 TVFMGSENSSQETRMLAKKLADEIGSWHLDV 445 (481)
Q Consensus 415 ~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i 445 (481)
-+++-+-+.-++|.+.+.++++.+|++.+.+
T Consensus 138 V~flDTG~lfpETy~~~d~v~~~ygl~i~~~ 168 (457)
T PLN02309 138 VFSLDTGRLNPETYRLFDAVEKHYGIRIEYM 168 (457)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 5677777788999999999999999988766
No 146
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=61.20 E-value=35 Score=36.48 Aligned_cols=32 Identities=9% Similarity=0.010 Sum_probs=27.2
Q ss_pred EEEecCCCCCcHHhHHHHHHHHHHhCCceEEe
Q 011602 414 YTVFMGSENSSQETRMLAKKLADEIGSWHLDV 445 (481)
Q Consensus 414 ~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i 445 (481)
-.+++-+-+.-++|.+.+.++++.+|++.+.+
T Consensus 142 pV~flDTG~lFpETy~~~d~v~~~ygl~l~~~ 173 (463)
T TIGR00424 142 RVFSLDTGRLNPETYRFFDAVEKQYGIRIEYM 173 (463)
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHhCCceEEE
Confidence 35677777788999999999999999988766
No 147
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=59.66 E-value=21 Score=33.13 Aligned_cols=33 Identities=12% Similarity=0.041 Sum_probs=28.4
Q ss_pred EEEecCCCCCcHHhHHHHHHHHHHhCCceEEee
Q 011602 414 YTVFMGSENSSQETRMLAKKLADEIGSWHLDVS 446 (481)
Q Consensus 414 ~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~ 446 (481)
..+++-+-..-++|.+.++++++.+|++...+.
T Consensus 20 ~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~ 52 (191)
T TIGR02055 20 KVFFLDTGRLFKETYETIDQVRERYDILIDVLS 52 (191)
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 467888877889999999999999999887774
No 148
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=58.27 E-value=30 Score=33.86 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (481)
+..++.+.+.++.|+.-|++.|++|... +..... ..+..+...+.+.++++.++++|+.+.+
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~---~~~~~~--~~~~~~~~~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 90 QQGLEIMEKAIQLARDLGIRTIQLAGYD---VYYEEH--DEETRRRFREGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEecCcc---cccCcC--CHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4567778899999999999999986321 111111 1223444556777888777778876643
No 149
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=57.66 E-value=32 Score=33.62 Aligned_cols=61 Identities=16% Similarity=0.058 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
+..++.+.+.|+.|+.-|++.|++| |+........+...+...+.+.++++.++++|+.+.
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 150 (284)
T PRK13210 90 ERALEIMKKAIRLAQDLGIRTIQLA-----GYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA 150 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEC-----CcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 4567888899999999999999985 221100001122334455667777777777887665
No 150
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=55.12 E-value=32 Score=33.69 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
+..++.+++.++.|+.-|+..|+++ |+........+...+...+.++++++.++++|+.+.
T Consensus 95 ~~~~~~~~~~i~~a~~lG~~~i~~~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~ 155 (283)
T PRK13209 95 AQALEIMRKAIQLAQDLGIRVIQLA-----GYDVYYEQANNETRRRFIDGLKESVELASRASVTLA 155 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC-----CccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 4567788899999999999999875 332111111122223344566777776667887654
No 151
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=52.54 E-value=34 Score=34.50 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=45.3
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
..+.+|-|||-||++.|..+ ++|. ++. .+++. . .|..+.=...+--+...
T Consensus 52 e~v~igasGgkdstvlA~v~--------~~Ln---~r~-----~~g~~---------l-----~Lls~degi~gyrd~sl 101 (347)
T KOG2840|consen 52 ERVAIGASGGKDSTVLAYVL--------DALN---ERH-----DYGLR---------L-----FLLSIDEGIRGYRDDSL 101 (347)
T ss_pred CccccccccchhHHHHHHHH--------HHhh---hhc-----CCCce---------e-----eeeeccccccceeccHH
Confidence 56999999999999866555 6664 220 00000 0 01122111112223345
Q ss_pred HHHHHHHHHhCCceEEeehHHHHH
Q 011602 429 MLAKKLADEIGSWHLDVSIDTVVS 452 (481)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~~~~~ 452 (481)
..-++.....|++..+++..++++
T Consensus 102 ~avkrn~~~~~lPL~ivs~~dl~~ 125 (347)
T KOG2840|consen 102 EAVKRNGVQYGLPLCIVSYKDLYG 125 (347)
T ss_pred HHHHHhhhhcCCceEEecHHHHhc
Confidence 566778888999999999999988
No 152
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=49.01 E-value=56 Score=31.77 Aligned_cols=63 Identities=22% Similarity=0.025 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEEE
Q 011602 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (481)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (481)
.+.+++.+.+.|+.|+.-|++.++++-.. .||... ..+..+...+.++++++.++++|+.+.+
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~-~~~~~~----~~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAH-AGYLTP----PNVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCCCC----HHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 45678899999999999999998875432 233311 1223344556777788777778876643
No 153
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=44.91 E-value=99 Score=29.57 Aligned_cols=71 Identities=15% Similarity=0.092 Sum_probs=39.7
Q ss_pred HHHHHCCCcEEEccCCCc--ccCCch----------HHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-eCC
Q 011602 185 ADLALNGVEVFMNASGSH--HQLRKL----------DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNG 251 (481)
Q Consensus 185 r~la~~Gadlil~psa~~--~~~gk~----------~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G 251 (481)
+..+.+|+|+|+.|=.+. +..... ......++..|.+++++++.--.. ...++..| =.++++ |+|
T Consensus 24 ~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~~~~~~y-Ns~~~i~~~G 101 (255)
T cd07581 24 AEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVAGMFE-PAGDGRVY-NTLVVVGPDG 101 (255)
T ss_pred HHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEEEeee-eCCCCcEE-EeEEEECCCC
Confidence 456779999999884432 211110 123455677888888877643211 11111234 334555 999
Q ss_pred cEEEee
Q 011602 252 DMIAQG 257 (481)
Q Consensus 252 ~ila~~ 257 (481)
+++..-
T Consensus 102 ~i~~~y 107 (255)
T cd07581 102 EIIAVY 107 (255)
T ss_pred cEEEEE
Confidence 988653
No 154
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=42.53 E-value=1e+02 Score=30.06 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEEE
Q 011602 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (481)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (481)
.+..++.+.+.++.|++-|++.+++.- |+... ...+.......+.+.++++.++++++.+.+
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~----g~~~~--~~~~~~~~~~~~~l~~l~~~a~~~gi~l~l 141 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHP----GSYLG--QSKEEGLKRVIEALNELIDKAETKGVVIAL 141 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECC----CCCCC--CCHHHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 566788899999999999999887732 22211 112233445567788888887778877654
No 155
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=42.51 E-value=33 Score=31.34 Aligned_cols=62 Identities=19% Similarity=0.076 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEEE
Q 011602 21 NLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (481)
Q Consensus 21 N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (481)
-++.+.+.++.|+.-|++.++++=. +|.........+..+...+.+.++++.++++|+.+.+
T Consensus 69 ~~~~~~~~i~~a~~lg~~~i~~~~g---~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 69 ALEYLKKAIDLAKRLGAKYIVVHSG---RYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHTBSEEEEECT---TESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHhCCCceeecCc---ccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 3788888999999999999988711 0111111112233445556677777777677876543
No 156
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=42.48 E-value=83 Score=30.80 Aligned_cols=69 Identities=10% Similarity=0.141 Sum_probs=38.1
Q ss_pred HHHHCCCcEEEccCC--CcccCCc-------------hHHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-e
Q 011602 186 DLALNGVEVFMNASG--SHHQLRK-------------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-V 249 (481)
Q Consensus 186 ~la~~Gadlil~psa--~~~~~gk-------------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p 249 (481)
..+.+||||++.|=. .++.... .......++..|.+++++++.- ..-...++..|. .++++ |
T Consensus 38 ~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~g-~~~~~~~~~~yN-s~~~i~~ 115 (287)
T cd07568 38 EAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMVLILP-IYEKEQGGTLYN-TAAVIDA 115 (287)
T ss_pred HHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHCCEEEEEE-eEEEcCCCcEEE-EEEEECC
Confidence 445689999998853 3332110 0012345778889999988752 111111223343 34555 8
Q ss_pred CCcEEEe
Q 011602 250 NGDMIAQ 256 (481)
Q Consensus 250 ~G~ila~ 256 (481)
+|+++..
T Consensus 116 ~G~i~~~ 122 (287)
T cd07568 116 DGTYLGK 122 (287)
T ss_pred CCcEeeE
Confidence 9998754
No 157
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=41.50 E-value=1.4e+02 Score=28.57 Aligned_cols=71 Identities=13% Similarity=0.131 Sum_probs=38.8
Q ss_pred HHHHHCCCcEEEccCCCc--ccCCc----------hHHHHHHHHHHHHHcCcEEEEEcCccCCC-CceeeeccEEEE-eC
Q 011602 185 ADLALNGVEVFMNASGSH--HQLRK----------LDYRIRAFISATHSRGGVYMYSNHQGCDG-GRLYFDGCSCVV-VN 250 (481)
Q Consensus 185 r~la~~Gadlil~psa~~--~~~gk----------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~-~~~~f~G~S~I~-p~ 250 (481)
+..+.+|+|+|+.|=.+. +.... .......++..|.+++++++.-...-..+ ++..| -+++++ |+
T Consensus 25 ~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~~~~~~~y-Ns~~~i~~~ 103 (265)
T cd07572 25 EEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLVGGSIPERDDDDGKVY-NTSLVFDPD 103 (265)
T ss_pred HHHHHCCCCEEECCccccCcCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEEEeeeccccCCCCcEE-EEEEEECCC
Confidence 345678999999885432 21110 01234456778888988876432211111 12233 334555 89
Q ss_pred CcEEEe
Q 011602 251 GDMIAQ 256 (481)
Q Consensus 251 G~ila~ 256 (481)
|+++..
T Consensus 104 G~i~~~ 109 (265)
T cd07572 104 GELVAR 109 (265)
T ss_pred CeEEeE
Confidence 998754
No 158
>PLN02798 nitrilase
Probab=40.94 E-value=1.3e+02 Score=29.47 Aligned_cols=70 Identities=10% Similarity=0.126 Sum_probs=38.9
Q ss_pred HHHHCCCcEEEccCCCccc-CCc----------hHHHHHHHHHHHHHcCcEEEEE--cCccCCCCceeeeccEEEE-eCC
Q 011602 186 DLALNGVEVFMNASGSHHQ-LRK----------LDYRIRAFISATHSRGGVYMYS--NHQGCDGGRLYFDGCSCVV-VNG 251 (481)
Q Consensus 186 ~la~~Gadlil~psa~~~~-~gk----------~~~~~~l~~~rA~e~~~~vv~a--N~~G~~~~~~~f~G~S~I~-p~G 251 (481)
..+.+|||||+.|=.+.+. ... .......++..|.+++++++.- ...... ++..| -.++++ |+|
T Consensus 37 ~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~~~-~~~~y-Ns~~vi~~~G 114 (286)
T PLN02798 37 EAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWLSLGGFQEKGPD-DSHLY-NTHVLIDDSG 114 (286)
T ss_pred HHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEEEEeeeEcccCC-CCceE-EEEEEECCCC
Confidence 4457899999988653211 110 0123455677888998887632 211111 12233 334556 899
Q ss_pred cEEEee
Q 011602 252 DMIAQG 257 (481)
Q Consensus 252 ~ila~~ 257 (481)
++++.-
T Consensus 115 ~i~~~y 120 (286)
T PLN02798 115 EIRSSY 120 (286)
T ss_pred CEEEEE
Confidence 988643
No 159
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=40.47 E-value=96 Score=30.65 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=36.5
Q ss_pred CCCcEEEccCCC--cccCCch--------------HHHHHHHHHHHHHcCcEEEEEcCc-cCCCCceeeeccEEEE-eCC
Q 011602 190 NGVEVFMNASGS--HHQLRKL--------------DYRIRAFISATHSRGGVYMYSNHQ-GCDGGRLYFDGCSCVV-VNG 251 (481)
Q Consensus 190 ~Gadlil~psa~--~~~~gk~--------------~~~~~l~~~rA~e~~~~vv~aN~~-G~~~~~~~f~G~S~I~-p~G 251 (481)
+|||||+.|=.+ .|..+.. ....+.+...|.+++++++.-... .....+..|. .++++ |+|
T Consensus 41 ~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G~~e~~~~~~~~~yN-sa~~i~~~G 119 (294)
T cd07582 41 LPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEALGEKAKELNVYIAANAYERDPDFPGLYFN-TAFIIDPSG 119 (294)
T ss_pred CCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHHHHHHHHHcCEEEEEeeeeecCCCCCcEEE-EEEEECCCC
Confidence 479999987432 2222111 013356778888999887643321 1110123343 34555 899
Q ss_pred cEEEee
Q 011602 252 DMIAQG 257 (481)
Q Consensus 252 ~ila~~ 257 (481)
+++..-
T Consensus 120 ~i~~~y 125 (294)
T cd07582 120 EIILRY 125 (294)
T ss_pred cEEEEE
Confidence 988654
No 160
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=40.19 E-value=1.3e+02 Score=28.90 Aligned_cols=70 Identities=11% Similarity=0.095 Sum_probs=38.0
Q ss_pred HHHHCCCcEEEccCCCc--ccCCc------------hHHHHHHHHHHHHHcCcEEEEEcC-ccCCCCceeeeccEEEE-e
Q 011602 186 DLALNGVEVFMNASGSH--HQLRK------------LDYRIRAFISATHSRGGVYMYSNH-QGCDGGRLYFDGCSCVV-V 249 (481)
Q Consensus 186 ~la~~Gadlil~psa~~--~~~gk------------~~~~~~l~~~rA~e~~~~vv~aN~-~G~~~~~~~f~G~S~I~-p 249 (481)
..+.+|+|+|+.|-.+. +.... .......++..|.+++++++.-.. .... ....| -..+++ |
T Consensus 27 ~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~~-~~~~~-Ns~~~i~~ 104 (258)
T cd07584 27 EAAAEGADLICFPELATTGYRPDLLGPKLWELSEPIDGPTVRLFSELAKELGVYIVCGFVEKGGV-PGKVY-NSAVVIDP 104 (258)
T ss_pred HHHHcCCCEEEcccccccCCCccccchhhHhhccCCCCcHHHHHHHHHHHcCeEEEEeehcccCC-CCceE-EEEEEECC
Confidence 44568999999885432 21110 001234567788888887764432 1111 11233 344555 8
Q ss_pred CCcEEEee
Q 011602 250 NGDMIAQG 257 (481)
Q Consensus 250 ~G~ila~~ 257 (481)
+|+++..-
T Consensus 105 ~G~i~~~y 112 (258)
T cd07584 105 EGESLGVY 112 (258)
T ss_pred CCCEEeEE
Confidence 99987543
No 161
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=39.94 E-value=1.1e+02 Score=29.74 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=39.3
Q ss_pred HHHHHCCCcEEEccCC--CcccCCch-------------HHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-
Q 011602 185 ADLALNGVEVFMNASG--SHHQLRKL-------------DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV- 248 (481)
Q Consensus 185 r~la~~Gadlil~psa--~~~~~gk~-------------~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~- 248 (481)
+..+.+|||||+.|=. ++|..... ....+.+...|.+++++++.--. ...++..| -..+++
T Consensus 26 ~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i~~g~~--~~~~~~~y-Ns~~~i~ 102 (279)
T TIGR03381 26 REAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGVVIPVSFF--EKAGNAYY-NSLAMID 102 (279)
T ss_pred HHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCcEEEEeee--ecCCCceE-EeEEEEC
Confidence 3456789999998843 33321110 12345567788899988764211 11122334 334555
Q ss_pred eCCcEEEee
Q 011602 249 VNGDMIAQG 257 (481)
Q Consensus 249 p~G~ila~~ 257 (481)
|+|+++..-
T Consensus 103 ~~G~i~~~y 111 (279)
T TIGR03381 103 ADGSVLGVY 111 (279)
T ss_pred CCCCEEEEE
Confidence 899988543
No 162
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=38.93 E-value=68 Score=31.90 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=43.6
Q ss_pred ccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHH----------HHHHHHHHHHcCcEEEEEcCccCCCCceeeecc
Q 011602 175 EELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYR----------IRAFISATHSRGGVYMYSNHQGCDGGRLYFDGC 244 (481)
Q Consensus 175 ~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~----------~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~ 244 (481)
.|++.|+.+.+.......|+|+|.++..-.-.-..++ -.-+...+.+.|.++|+.. .+.+|+|.
T Consensus 34 ~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiS------TDyVFDG~ 107 (281)
T COG1091 34 LDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHIS------TDYVFDGE 107 (281)
T ss_pred ccccChHHHHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEee------cceEecCC
Confidence 5889887777777778899999998865311100000 1234556778899998875 56888875
Q ss_pred E
Q 011602 245 S 245 (481)
Q Consensus 245 S 245 (481)
-
T Consensus 108 ~ 108 (281)
T COG1091 108 K 108 (281)
T ss_pred C
Confidence 4
No 163
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.71 E-value=69 Score=26.04 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=31.4
Q ss_pred HHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccC
Q 011602 188 ALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGC 234 (481)
Q Consensus 188 a~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~ 234 (481)
..+.||++++++..-. ......++..|.+++.|+++++..|.
T Consensus 45 ~i~~aD~VIv~t~~vs-----H~~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 45 KIKKADLVIVFTDYVS-----HNAMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred hcCCCCEEEEEeCCcC-----hHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 4578999999987532 12234578889999999999997764
No 164
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=37.32 E-value=1.3e+02 Score=29.01 Aligned_cols=63 Identities=13% Similarity=-0.091 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 17 DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 17 d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
+.+...+.+.+.++.|.+-|+..|+.| +|+.+.+. ...+..+...+.+.++++.+++.|+.+.
T Consensus 79 ~~~~~~~~~~~~i~~a~~lga~~i~~~----~g~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 141 (258)
T PRK09997 79 REEEFRDGVAAAIRYARALGNKKINCL----VGKTPAGF-SSEQIHATLVENLRYAANMLMKEDILLL 141 (258)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCEEEEC----CCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 345567778889999999999977653 34432221 1222334445667777776666776553
No 165
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=36.63 E-value=1.1e+02 Score=29.17 Aligned_cols=68 Identities=13% Similarity=0.011 Sum_probs=38.9
Q ss_pred ceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeE
Q 011602 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGIL 82 (481)
Q Consensus 3 ~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ 82 (481)
.+||+++ .|+.+|..++.++++.+.++++|+||. ++|+.....-.+.....++.+.+. ...++
T Consensus 4 ~~kIl~i------SDiHgn~~~le~l~~~~~~~~~D~vv~---------~GDl~~~g~~~~~~~~~l~~l~~l--~~pv~ 66 (224)
T cd07388 4 VRYVLAT------SNPKGDLEALEKLVGLAPETGADAIVL---------IGNLLPKAAKSEDYAAFFRILGEA--HLPTF 66 (224)
T ss_pred eeEEEEE------EecCCCHHHHHHHHHHHhhcCCCEEEE---------CCCCCCCCCCHHHHHHHHHHHHhc--CCceE
Confidence 3566554 366678888888888777789998873 233322111122333445556543 12466
Q ss_pred EEEcc
Q 011602 83 CSFGM 87 (481)
Q Consensus 83 iivG~ 87 (481)
++.|.
T Consensus 67 ~V~GN 71 (224)
T cd07388 67 YVPGP 71 (224)
T ss_pred EEcCC
Confidence 77774
No 166
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=36.54 E-value=67 Score=30.84 Aligned_cols=77 Identities=21% Similarity=0.120 Sum_probs=51.0
Q ss_pred HHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEE-EcceeeeCCeeEEEEEEEeCCe
Q 011602 28 SIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS-FGMPVIKGSERYNCQVLCLNRK 106 (481)
Q Consensus 28 ~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii-vG~~~~~~~~~yNsa~vi~~G~ 106 (481)
+|.+|-.-.+++++|=|-.. .+.|+...+..+.+..||++ |+..+ |-.-.......-+..+++++|+
T Consensus 146 AIARALaM~P~vmLFDEPTS--------ALDPElv~EVL~vm~~LA~e----GmTMivVTHEM~FAr~VadrviFmd~G~ 213 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTS--------ALDPELVGEVLDVMKDLAEE----GMTMIIVTHEMGFAREVADRVIFMDQGK 213 (240)
T ss_pred HHHHHHcCCCCEEeecCCcc--------cCCHHHHHHHHHHHHHHHHc----CCeEEEEechhHHHHHhhheEEEeeCCE
Confidence 56667777899999988641 23467778888888899985 54443 3322222334566788889999
Q ss_pred EEEEeecccc
Q 011602 107 IIMIRPKLWL 116 (481)
Q Consensus 107 il~~y~K~~L 116 (481)
++.......+
T Consensus 214 iie~g~p~~~ 223 (240)
T COG1126 214 IIEEGPPEEF 223 (240)
T ss_pred EEEecCHHHH
Confidence 8877654433
No 167
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=33.60 E-value=2.3e+02 Score=26.99 Aligned_cols=59 Identities=12% Similarity=-0.087 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEEE
Q 011602 22 LKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (481)
Q Consensus 22 ~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (481)
.+.+.+.|+.|++-|+..|.++ +|..+.+.. .++..+...+.++++++.+++.|+.+.+
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~----~g~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~gi~l~l 141 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCL----AGKRPAGVS-PEEARATLVENLRYAADALDRIGLTLLI 141 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEEC----cCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4667778888888899887643 344332211 1222333445677777766677876543
No 168
>PLN00202 beta-ureidopropionase
Probab=32.06 E-value=1.6e+02 Score=30.91 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=39.6
Q ss_pred HHHHCCCcEEEccCC--CcccCC---c-h--------HHHHHHHHHHHHHcCcEEEEEcCccCC---CCceeeeccEEEE
Q 011602 186 DLALNGVEVFMNASG--SHHQLR---K-L--------DYRIRAFISATHSRGGVYMYSNHQGCD---GGRLYFDGCSCVV 248 (481)
Q Consensus 186 ~la~~Gadlil~psa--~~~~~g---k-~--------~~~~~l~~~rA~e~~~~vv~aN~~G~~---~~~~~f~G~S~I~ 248 (481)
.++.+|||+|+.|=. .|+... + . ....+.++..|++++++++.- .... .++..| -.++++
T Consensus 121 ~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~g~~~~~l~~lA~~~~i~Iv~G--~~e~~~~~~~~~y-NSa~vI 197 (405)
T PLN00202 121 AAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFLQELARKYNMVIVSP--ILERDVNHGETLW-NTAVVI 197 (405)
T ss_pred HHHHCCCCEEEecchhccccccccccchHHHHhhhCCCHHHHHHHHHHHHCCeEEEEE--eeeeecCCCCcEE-EEEEEE
Confidence 346789999999854 333210 0 0 012356778889999988742 1111 012233 445566
Q ss_pred -eCCcEEEee
Q 011602 249 -VNGDMIAQG 257 (481)
Q Consensus 249 -p~G~ila~~ 257 (481)
|+|+++..-
T Consensus 198 ~~~G~iig~Y 207 (405)
T PLN00202 198 GNNGNIIGKH 207 (405)
T ss_pred CCCCcEEEEE
Confidence 899988654
No 169
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=31.49 E-value=58 Score=31.59 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcC
Q 011602 15 ALDFDCNLKNIKESIGRAKEAGAVIRLGPELEIT 48 (481)
Q Consensus 15 ~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~lt 48 (481)
.++...+.+.+.+.++...+.|..+++|||-.-+
T Consensus 118 R~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs 151 (245)
T PRK15018 118 RNNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRS 151 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEECCccCC
Confidence 3455666666777777766778899999998655
No 170
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=31.30 E-value=2.4e+02 Score=32.31 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=51.5
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCC-----
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENS----- 423 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 423 (481)
..+++++||+..|.-+ +-..+++ .+.+. . | ++++|...+..
T Consensus 249 e~ilvcI~~~~~~e~l---iR~a~Rl-A~~~~--a------------------~----------~~av~v~~~~~~~~~~ 294 (890)
T COG2205 249 ERILVCISGSPGSEKL---IRRAARL-ASRLH--A------------------K----------WTAVYVETPELHRLSE 294 (890)
T ss_pred ceEEEEECCCCchHHH---HHHHHHH-HHHhC--C------------------C----------eEEEEEeccccccccH
Confidence 6799999999999654 3332322 22232 0 1 57777655442
Q ss_pred -cHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHH
Q 011602 424 -SQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQ 459 (481)
Q Consensus 424 -~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~ 459 (481)
.+.....+.+||+.||.+...+.-.++.+++.+...
T Consensus 295 ~~~~~l~~~~~Lae~lGae~~~l~~~dv~~~i~~ya~ 331 (890)
T COG2205 295 KEARRLHENLRLAEELGAEIVTLYGGDVAKAIARYAR 331 (890)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHH
Confidence 234556788999999999999987777777766543
No 171
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=31.08 E-value=2e+02 Score=27.28 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=38.9
Q ss_pred HHHHHCCCcEEEccCCCc--ccCCc---------hHHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-eCCc
Q 011602 185 ADLALNGVEVFMNASGSH--HQLRK---------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGD 252 (481)
Q Consensus 185 r~la~~Gadlil~psa~~--~~~gk---------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~ 252 (481)
+.++.+|+|+++.|-.+. +..+. .......++..|.+++++++.--.. .. ++..| -..+++ |+|+
T Consensus 26 ~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~-~~-~~~~y-Ns~~~i~~~G~ 102 (254)
T cd07576 26 ARAAAAGADLLVFPELFLTGYNIGDAVARLAEPADGPALQALRAIARRHGIAIVVGYPE-RA-GGAVY-NAAVLIDEDGT 102 (254)
T ss_pred HHHHHcCCCEEEccCccccCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEEEeccc-cC-CCceE-EEEEEECCCCC
Confidence 356678999999885432 21110 1123455677788888877654221 11 12233 234455 8999
Q ss_pred EEEee
Q 011602 253 MIAQG 257 (481)
Q Consensus 253 ila~~ 257 (481)
++..-
T Consensus 103 i~~~y 107 (254)
T cd07576 103 VLANY 107 (254)
T ss_pred EeeEE
Confidence 77543
No 172
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=30.54 E-value=3.3e+02 Score=26.09 Aligned_cols=94 Identities=11% Similarity=-0.012 Sum_probs=51.1
Q ss_pred eeEeeCCceEEEEeeccCCCC----------------------------ChHHH--HHHHCCCcEEEccCCCcccCCch-
Q 011602 160 GFIQFLDTAVAAEICEELFTP----------------------------IPPHA--DLALNGVEVFMNASGSHHQLRKL- 208 (481)
Q Consensus 160 ~vf~~~g~riGv~IC~D~~~p----------------------------e~~~r--~la~~Gadlil~psa~~~~~gk~- 208 (481)
.+++++|.|||++-+.+.... +...+ ..+.+++|++++..-|..+....
T Consensus 122 ~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D~vIv~~HwG~e~~~~p 201 (250)
T PF09587_consen 122 AIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARKKADVVIVSLHWGIEYENYP 201 (250)
T ss_pred EEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHhcCCCEEEEEeccCCCCCCCC
Confidence 478899999999887654310 00111 12337899999887775433221
Q ss_pred HHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-eCCcEE
Q 011602 209 DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMI 254 (481)
Q Consensus 209 ~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~il 254 (481)
..+.+.+.....+.|.=+|..+..-.-.+-..| .+..|+ .-|+.+
T Consensus 202 ~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E~y-~~~~I~YSLGNfi 247 (250)
T PF09587_consen 202 TPEQRELARALIDAGADIIIGHHPHVIQPVEIY-KGKPIFYSLGNFI 247 (250)
T ss_pred CHHHHHHHHHHHHcCCCEEEeCCCCcccceEEE-CCEEEEEeCcccc
Confidence 233344555556777777776664322111123 333444 666544
No 173
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=30.16 E-value=41 Score=32.40 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=28.3
Q ss_pred CChHHHhccccchHHHHHHHcCCCcEEEeccCChhHH
Q 011602 326 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSS 362 (481)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa 362 (481)
...+|+....+..+.+++.+. +.+.|+||||-.-.
T Consensus 7 ~~~~e~~~~~a~~i~~~i~~~--~~~~l~lsgG~tp~ 41 (239)
T PRK12358 7 KDYEEMSRVAAHHLLGYMSKT--KRVNLAITAGSTPK 41 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHhC--CCeEEEECCCCCHH
Confidence 445788888999999999986 47999999994443
No 174
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=29.92 E-value=1.6e+02 Score=32.68 Aligned_cols=38 Identities=32% Similarity=0.458 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCceEEeehHHHHH--------HHHHHHHHhhCCCC
Q 011602 429 MLAKKLADEIGSWHLDVSIDTVVS--------AFLSLFQTLTGKRP 466 (481)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~~~~~--------~~~~~~~~~~~~~~ 466 (481)
.-|+.+|.++|+++..|+-.+++. .+.+.|.++.+.-|
T Consensus 238 ~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aP 283 (802)
T KOG0733|consen 238 SLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAP 283 (802)
T ss_pred HHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCC
Confidence 378899999999999999888775 45667777766665
No 175
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=29.42 E-value=2.5e+02 Score=27.98 Aligned_cols=67 Identities=6% Similarity=0.030 Sum_probs=36.5
Q ss_pred CCCcEEEccCCC--cccCCchH------------HHHHHHHHHHHHcCcEEEEEcCc-cCCCCceeeeccEEEE-eCCcE
Q 011602 190 NGVEVFMNASGS--HHQLRKLD------------YRIRAFISATHSRGGVYMYSNHQ-GCDGGRLYFDGCSCVV-VNGDM 253 (481)
Q Consensus 190 ~Gadlil~psa~--~~~~gk~~------------~~~~l~~~rA~e~~~~vv~aN~~-G~~~~~~~f~G~S~I~-p~G~i 253 (481)
+|+|||+.|=.+ +|...... ...+.++..|.+++++++.-... ...+....| -.++++ |+|++
T Consensus 35 ~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~G~~e~~~~~~~~~y-Nta~vi~~~G~i 113 (295)
T cd07566 35 KKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGYPEKVDESSPKLY-NSALVVDPEGEV 113 (295)
T ss_pred CCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEEEeeeEecCCCCCceE-EEEEEEcCCCeE
Confidence 799999988543 23221110 11244566788889887653211 111002233 445666 89998
Q ss_pred EEee
Q 011602 254 IAQG 257 (481)
Q Consensus 254 la~~ 257 (481)
++.-
T Consensus 114 i~~Y 117 (295)
T cd07566 114 VFNY 117 (295)
T ss_pred EEEE
Confidence 8654
No 176
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=28.52 E-value=2.3e+02 Score=26.63 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=37.8
Q ss_pred HHHHHCCCcEEEccCCCc--ccCCc-----------hHHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-eC
Q 011602 185 ADLALNGVEVFMNASGSH--HQLRK-----------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VN 250 (481)
Q Consensus 185 r~la~~Gadlil~psa~~--~~~gk-----------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~ 250 (481)
+..+.+|+|+++.|-.+. +.... .....+.++..|.+++++++.--.. .. ++..| -..+++ |+
T Consensus 25 ~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~~~-~~-~~~~~-N~~~~i~~~ 101 (253)
T cd07197 25 KEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEELDGPTLEALAELAKELGIYIVAGIAE-KD-GDKLY-NTAVVIDPD 101 (253)
T ss_pred HHHHHCCCCEEEcCCccccCCccccchhhhhhcccCCchHHHHHHHHHHHhCeEEEeeeEE-cc-CCceE-EEEEEECCC
Confidence 345678999999885432 11110 1234556777888888877633221 11 11223 334455 88
Q ss_pred CcEEEe
Q 011602 251 GDMIAQ 256 (481)
Q Consensus 251 G~ila~ 256 (481)
|+++..
T Consensus 102 G~i~~~ 107 (253)
T cd07197 102 GEIIGK 107 (253)
T ss_pred CeEEEE
Confidence 986643
No 177
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=28.40 E-value=2.4e+02 Score=26.77 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=38.0
Q ss_pred HHHHCCCcEEEccCCCc--ccCCc--------hHHHHHHHHHHHHHcCcEEEEEcC-ccCCCCceeeeccEEEE-eCCcE
Q 011602 186 DLALNGVEVFMNASGSH--HQLRK--------LDYRIRAFISATHSRGGVYMYSNH-QGCDGGRLYFDGCSCVV-VNGDM 253 (481)
Q Consensus 186 ~la~~Gadlil~psa~~--~~~gk--------~~~~~~l~~~rA~e~~~~vv~aN~-~G~~~~~~~f~G~S~I~-p~G~i 253 (481)
..+.+|+|+|+.|-.+. +.... .....+.++..|.+++++++.-.. .- . ++..| -.++++ |+|++
T Consensus 27 ~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~-~-~~~~y-Ns~~~i~~~G~i 103 (253)
T cd07583 27 EAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVAGSVAEK-E-GGKLY-NTAYVIDPDGEL 103 (253)
T ss_pred HHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEeceEEec-C-CCcEE-EEEEEECCCCcE
Confidence 45678999999885432 21111 012345567788888888773221 11 1 12233 334455 89988
Q ss_pred EEee
Q 011602 254 IAQG 257 (481)
Q Consensus 254 la~~ 257 (481)
+..-
T Consensus 104 ~~~y 107 (253)
T cd07583 104 IATY 107 (253)
T ss_pred EEEE
Confidence 7643
No 178
>PLN02747 N-carbamolyputrescine amidase
Probab=28.19 E-value=1.7e+02 Score=28.76 Aligned_cols=69 Identities=9% Similarity=0.021 Sum_probs=38.0
Q ss_pred HHHHHCCCcEEEccCCCc--ccCC----c---------hHHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-
Q 011602 185 ADLALNGVEVFMNASGSH--HQLR----K---------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV- 248 (481)
Q Consensus 185 r~la~~Gadlil~psa~~--~~~g----k---------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~- 248 (481)
+..+.+|||||+.|=.+. +... . .......+...|.+++++++..- .... ++..| -..+++
T Consensus 32 ~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~-~~~~-~~~~y-Ns~~~i~ 108 (296)
T PLN02747 32 REAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLAKELGVVIPVSF-FEEA-NNAHY-NSIAIID 108 (296)
T ss_pred HHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHcCeEEEeee-eecC-CCceE-EEEEEEC
Confidence 345678999999885431 2111 0 01223456778888988776421 1111 22233 234455
Q ss_pred eCCcEEEe
Q 011602 249 VNGDMIAQ 256 (481)
Q Consensus 249 p~G~ila~ 256 (481)
|+|++++.
T Consensus 109 ~~G~i~~~ 116 (296)
T PLN02747 109 ADGTDLGL 116 (296)
T ss_pred CCCCCcce
Confidence 89998754
No 179
>PRK12677 xylose isomerase; Provisional
Probab=28.12 E-value=2.8e+02 Score=28.91 Aligned_cols=77 Identities=17% Similarity=0.031 Sum_probs=43.1
Q ss_pred eEEEEEeccCCCC-----------C---HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccc---cchhhhhHHH
Q 011602 4 LKVATCNLNNWAL-----------D---FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHF---LELDTVTHAW 66 (481)
Q Consensus 4 ~rIAl~Q~~~~~~-----------d---~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~---~~~~~~~~~~ 66 (481)
|+|.++.+|.... | .+..++.+++.|+.|++-|++.|++- +|+...+.. ......+...
T Consensus 81 L~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~----~G~~g~~~~~~~d~~~a~~~~~ 156 (384)
T PRK12677 81 LVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMW----GGREGAEYDAAKDVRAALDRYR 156 (384)
T ss_pred CeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEe----eCCCCccCcccCCHHHHHHHHH
Confidence 6778777653111 1 23457778899999999999855441 343211111 1122334455
Q ss_pred HHHHHHHhcccCC--CeEEE
Q 011602 67 ECLKDLLLGDWTD--GILCS 84 (481)
Q Consensus 67 ~~l~~la~~~~~~--~i~ii 84 (481)
+.|..+++.+++. ++-+.
T Consensus 157 eaL~~l~~~A~~~G~gV~la 176 (384)
T PRK12677 157 EAIDLLAAYVKDQGYDLRFA 176 (384)
T ss_pred HHHHHHHHHHHhcCCCcEEE
Confidence 6777887776553 35443
No 180
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=27.93 E-value=46 Score=32.25 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=24.7
Q ss_pred CCCChHHHhccccchHHHHHHHcCCC--cEEEeccCC
Q 011602 324 YHSPEEEIAFGPGCWLWDYLRRSGAS--GFLLPLSGG 358 (481)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~l~lSGG 358 (481)
.|...+|+..+++..+.+...+.-.+ .|.|+||||
T Consensus 13 v~~~~~el~~~l~~~~~~~s~~~~~~~g~F~i~lSGG 49 (252)
T KOG3147|consen 13 VFSSEEELIEALAGYIAEKSEKALKKRGRFTLALSGG 49 (252)
T ss_pred ecccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 45566788877777776655554334 499999999
No 181
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=27.77 E-value=49 Score=32.02 Aligned_cols=41 Identities=32% Similarity=0.355 Sum_probs=31.0
Q ss_pred CCChHHHhccccchHHHHHHHcCCC--cEEEeccCChhHHHHHHHH
Q 011602 325 HSPEEEIAFGPGCWLWDYLRRSGAS--GFLLPLSGGADSSSVAAIV 368 (481)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~l~~~~~~--~~~l~lSGG~DSa~~a~l~ 368 (481)
+...+++..+.+..+.+++.+...+ .+.|+|||| |+= ..+.
T Consensus 6 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~LsgG--sTP-~~~y 48 (238)
T COG0363 6 FEDAEELAKAAAEIIADKLQAAKAERGRAVLALSGG--STP-LALY 48 (238)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhhhccCcEEEEECCC--CCH-HHHH
Confidence 4556788888899999999887543 699999999 664 3343
No 182
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=25.95 E-value=55 Score=31.44 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=27.6
Q ss_pred CChHHHhccccchHHHHHHHcCCCcEEEeccCChhHHH
Q 011602 326 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSS 363 (481)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~ 363 (481)
...+++..+.+..|.+.+++. ..+.|+|||| |+-
T Consensus 7 ~~~~~~~~~~a~~i~~~i~~~--~~~~l~lsgG--stP 40 (232)
T PRK09762 7 ENYTALSERASEYLLAVIRSK--PDAVICLATG--ATP 40 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHHC--CCeEEEECCC--CCH
Confidence 445788888888899998886 4799999999 664
No 183
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=25.33 E-value=65 Score=30.94 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=22.5
Q ss_pred ChHHHhccccchHHHHHHH--cCCCcEEEeccCChhHHH
Q 011602 327 PEEEIAFGPGCWLWDYLRR--SGASGFLLPLSGGADSSS 363 (481)
Q Consensus 327 ~~~~~~~~~~~~l~~~l~~--~~~~~~~l~lSGG~DSa~ 363 (481)
..+++..+++..+.+.+++ ..-+.+.|+|||| |+-
T Consensus 4 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~lalsGG--stp 40 (233)
T TIGR01198 4 NSAELAEALAERIATKLQTALAERGQFSLALSGG--RSP 40 (233)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCC--ccH
Confidence 3456666666666665554 1124799999999 654
No 184
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=24.95 E-value=2.4e+02 Score=29.02 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=38.2
Q ss_pred HHHHCCCcEEEccCCCc--ccC--C-c--h---------HHHHHHHHHHHHHcCcEEEEEcCccCCC--CceeeeccEEE
Q 011602 186 DLALNGVEVFMNASGSH--HQL--R-K--L---------DYRIRAFISATHSRGGVYMYSNHQGCDG--GRLYFDGCSCV 247 (481)
Q Consensus 186 ~la~~Gadlil~psa~~--~~~--g-k--~---------~~~~~l~~~rA~e~~~~vv~aN~~G~~~--~~~~f~G~S~I 247 (481)
..+.+|||||+.|=.+. +.+ . + . ....+.++..|.+++++++.. ..-... ++..| -.+++
T Consensus 98 ~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~g-i~e~~~~~~~~~y-Nta~v 175 (363)
T cd07587 98 AAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTKFCQELAKKYNMVIVSP-ILERDEEHGDTIW-NTAVV 175 (363)
T ss_pred HHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHHHHHHHHHHcCcEEEEe-eeeeecCCCCcEE-EEEEE
Confidence 45678999999885432 211 0 0 0 012345778889999988631 110110 12344 33455
Q ss_pred E-eCCcEEEe
Q 011602 248 V-VNGDMIAQ 256 (481)
Q Consensus 248 ~-p~G~ila~ 256 (481)
+ |+|+++..
T Consensus 176 i~~~G~ilg~ 185 (363)
T cd07587 176 ISNSGNVLGK 185 (363)
T ss_pred ECCCCCEEee
Confidence 5 89998854
No 185
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=24.21 E-value=2.8e+02 Score=26.07 Aligned_cols=70 Identities=16% Similarity=0.081 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEEEcceeeeCCeeEEEEEEEeCCe
Q 011602 27 ESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRK 106 (481)
Q Consensus 27 ~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iivG~~~~~~~~~yNsa~vi~~G~ 106 (481)
..|.+|..-.+++.+|-|-.. .+.+++..+....+++||++ ....+++-.-.......-|-.+++++|.
T Consensus 161 ~aIARaLameP~vmLFDEPTS--------ALDPElVgEVLkv~~~LAeE---grTMv~VTHEM~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTS--------ALDPELVGEVLKVMQDLAEE---GRTMVVVTHEMGFARDVSSHVIFLHQGK 229 (256)
T ss_pred HHHHHHHhcCCceEeecCCcc--------cCCHHHHHHHHHHHHHHHHh---CCeEEEEeeehhHHHhhhhheEEeecce
Confidence 356666667788888887531 23467778888888999987 4555665533333333445566667887
Q ss_pred E
Q 011602 107 I 107 (481)
Q Consensus 107 i 107 (481)
|
T Consensus 230 i 230 (256)
T COG4598 230 I 230 (256)
T ss_pred e
Confidence 5
No 186
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=23.93 E-value=3e+02 Score=26.64 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=38.6
Q ss_pred HHHHHCCCcEEEccCC--CcccCCc-------------hHHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-
Q 011602 185 ADLALNGVEVFMNASG--SHHQLRK-------------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV- 248 (481)
Q Consensus 185 r~la~~Gadlil~psa--~~~~~gk-------------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~- 248 (481)
+..+.+|+||++.|=. .++..+. .......+...|.+++++++.-. .-...+.. +.-..+++
T Consensus 26 ~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i~iv~g~-~~~~~~~~-~yNs~~v~~ 103 (284)
T cd07573 26 REAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGVVIPVSL-FEKRGNGL-YYNSAVVID 103 (284)
T ss_pred HHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCEEEEecc-eeeCCCCc-EEEEEEEEC
Confidence 3456789999998853 2332111 01223456778888888776522 11111112 22345556
Q ss_pred eCCcEEEee
Q 011602 249 VNGDMIAQG 257 (481)
Q Consensus 249 p~G~ila~~ 257 (481)
|+|+++..-
T Consensus 104 ~~G~i~~~y 112 (284)
T cd07573 104 ADGSLLGVY 112 (284)
T ss_pred CCCCEEeEE
Confidence 899987553
No 187
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=23.89 E-value=1.6e+02 Score=29.38 Aligned_cols=103 Identities=25% Similarity=0.244 Sum_probs=54.5
Q ss_pred hHHHHHHHcCCCcEEEeccCChhHHHHH-----HHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcce
Q 011602 338 WLWDYLRRSGASGFLLPLSGGADSSSVA-----AIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRI 412 (481)
Q Consensus 338 ~l~~~l~~~~~~~~~l~lSGG~DSa~~a-----~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (481)
-|+.++++. .-+.||++|+.|...=+ .++.-|-+.-.+++..|++.+ ++.+.++-.|.- +.|-.-=
T Consensus 198 ~lk~fi~ey--~pvlIgVdGaAD~l~~~GykP~lIvGdp~~i~~~aLR~ga~vv------lpad~dGhApGl-eRiQdLG 268 (395)
T COG4825 198 SLKPFIKEY--QPVLIGVDGAADVLRKAGYKPQLIVGDPDQISTEALRCGAKVV------LPADADGHAPGL-ERIQDLG 268 (395)
T ss_pred HHHHHHHhh--CCEEEEccchHHHHHHcCCCcceeecCcchhhHHHHhccccee------eccCCCCCCchH-HHHHhcC
Confidence 466777777 68999999999975422 122222112223333233222 011111101100 0110111
Q ss_pred EEEEecCCCCCcHHhHHHHHHHHHHhCCceE-----EeehHHHHH
Q 011602 413 FYTVFMGSENSSQETRMLAKKLADEIGSWHL-----DVSIDTVVS 452 (481)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~-----~i~i~~~~~ 452 (481)
+.+.+.|+.+|| .+-|-.||..-|+.|. .++|++.|+
T Consensus 269 vgAmTFP~~gss---tDlAllLAd~hga~~lv~vG~~~~~~~ffe 310 (395)
T COG4825 269 VGAMTFPAAGSS---TDLALLLADHHGAALLVTVGHRANIETFFE 310 (395)
T ss_pred cceeeccCCCch---hhHHHHHhhccCcceeEecCCcccHHHHHh
Confidence 457788977766 3578889999998874 457887777
No 188
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=23.46 E-value=3.6e+02 Score=22.74 Aligned_cols=58 Identities=12% Similarity=0.009 Sum_probs=42.5
Q ss_pred cHHhHHHHHHHHHHhCCceEEeehHHHHHHHH---HHHHHhhCCCCceeecCCceeeeeeC
Q 011602 424 SQETRMLAKKLADEIGSWHLDVSIDTVVSAFL---SLFQTLTGKRPCYKVAPTLMKACVVI 481 (481)
Q Consensus 424 ~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (481)
.+.+.+-+-+|-..|=-.....+..+.-+..- +.+..-.+..--++..|++.|.|+|+
T Consensus 12 GrA~lDL~vRLlARLYP~l~ilp~g~as~~~a~~l~~LA~sINp~I~i~r~G~s~~~clV~ 72 (131)
T PF14459_consen 12 GRASLDLVVRLLARLYPKLCILPSGEASSFQAQNLQSLARSINPRIEIRRSGSSPMHCLVI 72 (131)
T ss_pred chhHHHHHHHHHHHhcceEEEeecchhHHHHHHHHHHHHHhcCCCeEEEecCCCceEEEEe
Confidence 45677778888888888888888876654443 33444455666788899999999986
No 189
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=23.38 E-value=3e+02 Score=27.54 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCcEEEEEcC-ccC---------CCCceeeeccEEEE-eCCcEEEee
Q 011602 212 IRAFISATHSRGGVYMYSNH-QGC---------DGGRLYFDGCSCVV-VNGDMIAQG 257 (481)
Q Consensus 212 ~~l~~~rA~e~~~~vv~aN~-~G~---------~~~~~~f~G~S~I~-p~G~ila~~ 257 (481)
.+.++..|++++++++.--. ... ..+...| =.++++ |+|+++..-
T Consensus 90 ~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~y-Nsa~vi~~~G~iv~~Y 145 (299)
T cd07567 90 LQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQY-NTNVVFDRDGTLIARY 145 (299)
T ss_pred HHHHHHHHHHhCeEEEeccccccccccccccCCCCCCcee-EEEEEEcCCCCccceE
Confidence 45677888899998875211 000 0011233 334555 899988654
No 190
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=23.01 E-value=2.1e+02 Score=23.20 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=30.4
Q ss_pred EEecCCCCCcHHhHHHHHH---HHHHhCCceEEeehHHHHHHHHHHHHHhhC
Q 011602 415 TVFMGSENSSQETRMLAKK---LADEIGSWHLDVSIDTVVSAFLSLFQTLTG 463 (481)
Q Consensus 415 ~~~~~~~~~~~~~~~~a~~---la~~lg~~~~~i~i~~~~~~~~~~~~~~~~ 463 (481)
-||..|..++..++++.++ +-+..|++|.++||+.- ....+.+....|
T Consensus 3 ~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d-~~~r~em~~~~~ 53 (92)
T cd03030 3 KVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN-EENRQWMRENVP 53 (92)
T ss_pred EEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC-HHHHHHHHHhcC
Confidence 4666666667777776655 45667999999999642 333333333333
No 191
>smart00642 Aamy Alpha-amylase domain.
Probab=22.77 E-value=1.7e+02 Score=26.47 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCC--------CcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEEEcceee
Q 011602 21 NLKNIKESIGRAKEAGAVIRLGPEL--------EITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVI 90 (481)
Q Consensus 21 N~~~i~~~i~~A~~~gadLvvfPEl--------~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iivG~~~~ 90 (481)
+++.+.+.+...++.|++-|.++=. .-.||...|.+....-.. ..+.+++|.+++++.+|-|++=+...
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~G-t~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFG-TMEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccC-CHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3444555555556689988866544 234566555543222111 34568888888888999888765544
No 192
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=22.36 E-value=4.8e+02 Score=27.10 Aligned_cols=64 Identities=16% Similarity=0.052 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeEE-EcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCC--CeEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIR-LGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTD--GILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLv-vfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~--~i~ii 84 (481)
+..++.+++.|+.|++-|+..| ++|=..-..|... .......+...+.|.++++.+++. ++.+.
T Consensus 111 ~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~--~d~~~a~~~~~e~L~~lae~A~~~G~GV~la 177 (382)
T TIGR02631 111 RYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGA--KDVRAALDRMREALNLLAAYAEDQGYGLRFA 177 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccc--cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 5667788889999999999754 4443221111111 111223444566777787766554 45443
No 193
>PRK09739 hypothetical protein; Provisional
Probab=22.09 E-value=3.8e+02 Score=24.68 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=24.0
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHH-HHHHHCCCeEEEc
Q 011602 1 MRLLKVATCNLNNWALDFDCNLKNIKESI-GRAKEAGAVIRLG 42 (481)
Q Consensus 1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i-~~A~~~gadLvvf 42 (481)
|.+|||-++...+..+ .|..++.+.+ +.+.+.|.++.++
T Consensus 1 ~~mmkiliI~~sp~~~---s~s~~l~~~~~~~~~~~g~~v~~~ 40 (199)
T PRK09739 1 MQSMRIYLVWAHPRHD---SLTAKVAEAIHQRAQERGHQVEEL 40 (199)
T ss_pred CCCceEEEEEcCCCCC---CcHHHHHHHHHHHHHHCCCEEEEE
Confidence 7789999999887653 4444444444 3444456555443
No 194
>PRK09989 hypothetical protein; Provisional
Probab=21.94 E-value=2.7e+02 Score=26.71 Aligned_cols=61 Identities=8% Similarity=-0.235 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEE-EcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 18 FDCNLKNIKESIGRAKEAGAVIR-LGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadLv-vfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
.+...+.+.+.++.|++-|+..| ++| |+.+.. .......+...+.+.++++.+++.++.+.
T Consensus 80 ~~~~~~~l~~~i~~A~~lg~~~v~v~~-----g~~~~~-~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 141 (258)
T PRK09989 80 EHEARADIDLALEYALALNCEQVHVMA-----GVVPAG-EDAERYRAVFIDNLRYAADRFAPHGKRIL 141 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCcCEEEECc-----cCCCCC-CCHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 34445667788888888899866 444 333211 11122233455667777777667787654
No 195
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=21.72 E-value=2.1e+02 Score=27.79 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=36.7
Q ss_pred HHHCCCcEEEccCCCcccC-CchHHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-eCCcEEEe
Q 011602 187 LALNGVEVFMNASGSHHQL-RKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQ 256 (481)
Q Consensus 187 la~~Gadlil~psa~~~~~-gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~ 256 (481)
.+.+|+|+++.|=.+-..+ .......+.++..|.+++++++.-...-..+++..| -.++++ |+|+++..
T Consensus 35 a~~~ga~lvvfPE~~l~g~~~~~~~~~~~l~~~ak~~~i~ii~G~~~~~~~~~~~~-Ns~~~i~~~G~i~~~ 105 (270)
T cd07571 35 LADEKPDLVVWPETALPFDLQRDPDALARLARAARAVGAPLLTGAPRREPGGGRYY-NSALLLDPGGGILGR 105 (270)
T ss_pred cccCCCCEEEecCCcCCcccccCHHHHHHHHHHHHhcCCeEEEeeeeeccCCCceE-EEEEEECCCCCCcCc
Confidence 3456899999885432111 111233456777788899987643221111011223 234455 89987643
No 196
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=21.42 E-value=4.1e+02 Score=26.18 Aligned_cols=70 Identities=11% Similarity=0.217 Sum_probs=38.9
Q ss_pred HHHHHCCCcEEEccCCCc--ccCC---------ch-------------HHHHHHHHHHHHHcCcEEEEEcCccCCCCcee
Q 011602 185 ADLALNGVEVFMNASGSH--HQLR---------KL-------------DYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (481)
Q Consensus 185 r~la~~Gadlil~psa~~--~~~g---------k~-------------~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (481)
+.++.+|+|+|+.|-.+. +... .. ....+.+...|.+++++++..... .. ++..
T Consensus 27 ~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~-~~~~ 104 (297)
T cd07564 27 EEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELERLAEAARENGIYVVLGVSE-RD-GGTL 104 (297)
T ss_pred HHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHHHHHHHHHcCcEEEEeeEe-cc-CCce
Confidence 345678999999885432 1110 00 011234566788888887754321 11 2223
Q ss_pred eeccEEEE-eCCcEEEee
Q 011602 241 FDGCSCVV-VNGDMIAQG 257 (481)
Q Consensus 241 f~G~S~I~-p~G~ila~~ 257 (481)
| -.++++ |+|+++..-
T Consensus 105 y-Ns~~vi~~~G~i~~~y 121 (297)
T cd07564 105 Y-NTQLLIDPDGELLGKH 121 (297)
T ss_pred E-EEEEEEcCCCCEeeee
Confidence 3 344556 899988654
No 197
>PRK10490 sensor protein KdpD; Provisional
Probab=21.33 E-value=5.4e+02 Score=30.02 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=31.7
Q ss_pred EEEEecCCCC---CcH---HhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHH
Q 011602 413 FYTVFMGSEN---SSQ---ETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQ 459 (481)
Q Consensus 413 ~~~~~~~~~~---~~~---~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~ 459 (481)
++++|.-+.. .++ ....+..+||+.+|++.+.+.-+++.+.+.+...
T Consensus 281 ~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~dva~~i~~~A~ 333 (895)
T PRK10490 281 WHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDPAEEKAVLRYAR 333 (895)
T ss_pred EEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHH
Confidence 5777765432 112 2233556799999999999988778777776544
No 198
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=21.10 E-value=2.1e+02 Score=27.92 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=45.4
Q ss_pred HHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEEEcceeeeCCeeEEEEEEEeCCeEE
Q 011602 33 KEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSFGMPVIKGSERYNCQVLCLNRKII 108 (481)
Q Consensus 33 ~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iivG~~~~~~~~~yNsa~vi~~G~il 108 (481)
....+|++++=|----| .+.|.+.|.+.+.++.+. ..+.++++.-...=.++-|.+++++.|++.
T Consensus 162 ~~~~pdILllDEvlavG--------D~~F~~K~~~rl~e~~~~---~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~ 226 (249)
T COG1134 162 THVEPDILLLDEVLAVG--------DAAFQEKCLERLNELVEK---NKTIVLVSHDLGAIKQYCDRAIWLEHGQIR 226 (249)
T ss_pred hhcCCCEEEEehhhhcC--------CHHHHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhcCeeEEEeCCEEE
Confidence 34467888887765322 356888888888888765 467777775332224578999999999976
No 199
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=20.37 E-value=1.3e+02 Score=24.18 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCCcC
Q 011602 20 CNLKNIKESIGRAKEAGAVIRLGPELEIT 48 (481)
Q Consensus 20 ~N~~~i~~~i~~A~~~gadLvvfPEl~lt 48 (481)
.+.+.+.+.++ +.+.|..+++|||-..+
T Consensus 60 ~~~~~~~~~~~-~l~~~~~~~ifPeG~~~ 87 (118)
T smart00563 60 LARAALREAVR-LLRDGGWLLIFPEGTRS 87 (118)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCCcccC
Confidence 44555555544 55678999999998754
Done!