Query 011602
Match_columns 481
No_of_seqs 333 out of 2545
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:33:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ilv_A Glutamine-dependent NAD 100.0 2.4E-81 8.3E-86 683.1 41.1 420 1-469 3-427 (634)
2 4f4h_A Glutamine dependent NAD 100.0 5.2E-76 1.8E-80 632.4 42.1 357 3-464 6-380 (565)
3 3sdb_A Glutamine-dependent NAD 100.0 1.1E-70 3.8E-75 602.0 41.7 416 1-461 10-443 (680)
4 3n05_A NH(3)-dependent NAD(+) 100.0 2.7E-68 9.2E-73 577.4 39.6 383 1-458 1-400 (590)
5 3p8k_A Hydrolase, carbon-nitro 100.0 1.1E-47 3.9E-52 379.6 27.4 247 1-284 18-269 (281)
6 3ivz_A Nitrilase; alpha-beta s 100.0 9.4E-48 3.2E-52 376.4 24.5 237 4-283 2-246 (262)
7 3hkx_A Amidase; alpha-beta-BET 100.0 6.6E-48 2.3E-52 381.7 19.8 245 2-284 19-268 (283)
8 2e11_A Hydrolase; dimethylarse 100.0 8.1E-47 2.8E-51 370.4 21.7 245 1-284 1-253 (266)
9 2w1v_A Nitrilase-2, nitrilase 100.0 3.1E-46 1.1E-50 368.2 25.2 249 1-284 1-258 (276)
10 1uf5_A N-carbamyl-D-amino acid 100.0 4E-45 1.4E-49 364.8 22.9 249 2-283 2-284 (303)
11 1f89_A 32.5 kDa protein YLR351 100.0 4.1E-45 1.4E-49 362.9 22.1 248 3-284 10-274 (291)
12 2vhh_A CG3027-PA; hydrolase; 2 100.0 1.4E-43 4.6E-48 367.1 23.4 251 2-284 71-355 (405)
13 2uxy_A Aliphatic amidase; nitr 100.0 6.7E-44 2.3E-48 361.8 19.5 241 2-282 11-268 (341)
14 2dyu_A Formamidase; AMIF, CEK, 100.0 9.6E-43 3.3E-47 352.5 21.0 243 3-284 13-270 (334)
15 1ems_A Nitfhit, NIT-fragIle hi 100.0 1.4E-42 4.6E-47 364.2 21.7 249 1-284 12-274 (440)
16 1wxi_A NH(3)-dependent NAD(+) 99.6 1.6E-15 5.3E-20 148.6 12.3 106 325-460 17-124 (275)
17 3q4g_A NH(3)-dependent NAD(+) 99.6 1.7E-15 5.9E-20 148.0 12.1 107 325-461 18-129 (279)
18 1kqp_A NAD+ synthase, NH(3)-de 99.6 6.1E-15 2.1E-19 144.2 12.0 108 326-465 17-125 (271)
19 3dpi_A NAD+ synthetase; ssgcid 99.6 6.5E-15 2.2E-19 144.0 11.3 105 324-460 23-128 (285)
20 3p52_A NH(3)-dependent NAD(+) 99.6 5.1E-15 1.7E-19 142.9 10.1 93 327-456 5-97 (249)
21 3fiu_A NH(3)-dependent NAD(+) 99.5 2.6E-14 8.8E-19 138.0 10.8 99 327-463 8-106 (249)
22 1xng_A NH(3)-dependent NAD(+) 99.5 1.6E-13 5.6E-18 133.9 11.6 94 328-458 5-98 (268)
23 2e18_A NH(3)-dependent NAD(+) 99.3 6.8E-12 2.3E-16 121.6 11.1 90 328-459 6-95 (257)
24 2vxo_A GMP synthase [glutamine 98.8 5.5E-09 1.9E-13 114.2 8.1 87 328-453 223-309 (697)
25 1gpm_A GMP synthetase, XMP ami 98.6 5.1E-08 1.8E-12 103.7 8.3 83 329-451 211-294 (525)
26 2dpl_A GMP synthetase, GMP syn 98.5 1.1E-07 3.9E-12 94.2 8.2 82 329-450 4-86 (308)
27 3uow_A GMP synthetase; structu 98.5 3.8E-07 1.3E-11 97.6 10.1 75 340-451 246-323 (556)
28 2hma_A Probable tRNA (5-methyl 98.5 3E-07 1E-11 93.7 8.6 72 342-451 3-82 (376)
29 2ywb_A GMP synthase [glutamine 98.4 3.8E-07 1.3E-11 96.6 8.7 82 329-451 193-274 (503)
30 2pg3_A Queuosine biosynthesis 98.4 5E-07 1.7E-11 85.7 8.5 65 347-449 1-66 (232)
31 3tqi_A GMP synthase [glutamine 98.3 9E-07 3.1E-11 94.1 8.0 83 329-451 214-297 (527)
32 3bl5_A Queuosine biosynthesis 98.3 8.9E-07 3.1E-11 82.8 7.0 63 349-449 4-66 (219)
33 2der_A TRNA-specific 2-thiouri 98.2 2.5E-06 8.7E-11 86.9 9.5 65 349-451 18-90 (380)
34 1vl2_A Argininosuccinate synth 98.2 1.5E-06 5E-11 89.0 7.1 63 349-451 15-78 (421)
35 3k32_A Uncharacterized protein 98.1 3.6E-06 1.2E-10 78.2 6.0 64 347-450 5-68 (203)
36 2c5s_A THII, probable thiamine 98.0 1.1E-05 3.9E-10 83.1 8.1 67 349-453 188-260 (413)
37 1sur_A PAPS reductase; assimil 98.0 1.7E-05 5.9E-10 74.1 8.6 72 339-449 36-107 (215)
38 1jgt_A Beta-lactam synthetase; 98.0 1.2E-05 4.2E-10 85.1 8.2 83 327-449 218-302 (513)
39 1kor_A Argininosuccinate synth 98.0 1.1E-05 3.6E-10 82.8 7.4 64 349-451 1-65 (400)
40 1k92_A Argininosuccinate synth 97.9 8.8E-06 3E-10 84.2 5.8 66 349-452 11-77 (455)
41 1ct9_A Asparagine synthetase B 97.8 2.6E-05 8.7E-10 83.4 8.1 93 329-449 209-301 (553)
42 1q15_A CARA; CMPR, (2S,5S)-5-c 97.8 1.5E-05 5.1E-10 84.3 5.8 82 328-449 216-299 (503)
43 2nz2_A Argininosuccinate synth 97.8 2.9E-05 9.9E-10 79.8 6.8 63 349-451 6-69 (413)
44 3rjz_A N-type ATP pyrophosphat 97.7 2.6E-05 8.9E-10 73.9 5.7 66 347-450 3-74 (237)
45 1wy5_A TILS, hypothetical UPF0 97.7 3.8E-05 1.3E-09 76.3 6.2 67 349-448 25-93 (317)
46 2o8v_A Phosphoadenosine phosph 97.6 0.0001 3.4E-09 70.7 8.0 62 349-448 46-107 (252)
47 1ni5_A Putative cell cycle pro 97.6 0.00011 3.8E-09 76.1 8.6 78 337-449 4-83 (433)
48 3a2k_A TRNA(Ile)-lysidine synt 97.6 0.00012 4.2E-09 76.5 8.8 75 340-448 6-87 (464)
49 1vbk_A Hypothetical protein PH 97.4 0.00034 1.2E-08 69.0 7.9 61 349-451 180-248 (307)
50 1zun_A Sulfate adenylyltransfe 97.2 0.00083 2.8E-08 66.8 8.5 76 338-449 38-113 (325)
51 2wsi_A FAD synthetase; transfe 97.1 0.0015 5.1E-08 64.4 8.9 88 341-448 44-137 (306)
52 2oq2_A Phosphoadenosine phosph 97.0 0.0014 4.8E-08 63.0 8.4 73 339-448 34-110 (261)
53 2goy_A Adenosine phosphosulfat 96.4 0.0099 3.4E-07 57.5 9.0 70 339-448 46-115 (275)
54 3fwk_A FMN adenylyltransferase 94.7 0.062 2.1E-06 52.5 7.6 92 338-446 46-140 (308)
55 3ngf_A AP endonuclease, family 71.4 18 0.00061 33.5 9.5 62 17-84 87-148 (269)
56 1k77_A EC1530, hypothetical pr 70.3 22 0.00075 32.5 9.8 62 18-84 80-141 (260)
57 3obe_A Sugar phosphate isomera 67.5 16 0.00055 34.9 8.4 74 4-85 90-168 (305)
58 3tva_A Xylose isomerase domain 67.3 14 0.00046 34.7 7.7 62 17-85 96-157 (290)
59 3dx5_A Uncharacterized protein 67.1 15 0.00051 34.3 8.0 76 4-84 62-140 (286)
60 3qc0_A Sugar isomerase; TIM ba 58.1 11 0.00036 35.0 5.0 62 19-84 79-140 (275)
61 1i60_A IOLI protein; beta barr 57.9 20 0.00068 33.0 6.9 61 19-84 80-140 (278)
62 3cqj_A L-ribulose-5-phosphate 57.1 16 0.00054 34.4 6.1 60 19-84 104-164 (295)
63 3kws_A Putative sugar isomeras 53.5 26 0.00088 32.7 6.9 62 19-84 100-163 (287)
64 3l23_A Sugar phosphate isomera 48.2 53 0.0018 31.1 8.3 57 18-82 103-159 (303)
65 2hk0_A D-psicose 3-epimerase; 47.0 48 0.0016 31.2 7.8 66 19-84 103-168 (309)
66 3ayv_A Putative uncharacterize 46.2 25 0.00084 32.2 5.4 62 19-84 72-134 (254)
67 3bdk_A D-mannonate dehydratase 45.0 70 0.0024 31.9 8.8 42 4-45 78-126 (386)
68 3p8k_A Hydrolase, carbon-nitro 44.0 39 0.0013 31.8 6.5 68 188-257 50-128 (281)
69 2q02_A Putative cytoplasmic pr 41.8 68 0.0023 29.2 7.8 70 4-84 65-137 (272)
70 3u0h_A Xylose isomerase domain 41.5 34 0.0012 31.4 5.7 61 18-84 79-139 (281)
71 3vni_A Xylose isomerase domain 37.1 66 0.0023 29.8 7.0 64 19-84 84-149 (294)
72 3cny_A Inositol catabolism pro 35.4 72 0.0024 29.6 6.9 66 19-84 86-158 (301)
73 3hkx_A Amidase; alpha-beta-BET 35.2 88 0.003 29.3 7.5 70 186-257 48-129 (283)
74 1tz9_A Mannonate dehydratase; 34.0 1.3E+02 0.0043 29.3 8.7 39 4-42 69-114 (367)
75 2zvr_A Uncharacterized protein 32.9 1.3E+02 0.0046 27.6 8.4 56 18-78 108-163 (290)
76 1uf3_A Hypothetical protein TT 31.2 38 0.0013 29.9 4.0 70 1-87 1-72 (228)
77 2zds_A Putative DNA-binding pr 30.2 67 0.0023 30.4 5.8 62 19-84 107-177 (340)
78 1xla_A D-xylose isomerase; iso 28.5 80 0.0027 31.2 6.2 62 19-84 112-178 (394)
79 2vhh_A CG3027-PA; hydrolase; 2 28.4 1.4E+02 0.0048 29.7 8.0 71 186-257 107-195 (405)
80 3ivz_A Nitrilase; alpha-beta s 25.2 1.5E+02 0.005 27.2 7.0 68 186-257 29-111 (262)
81 4hs4_A Chromate reductase; tri 24.9 98 0.0034 27.4 5.5 37 1-40 4-40 (199)
82 3aam_A Endonuclease IV, endoiv 24.5 1.3E+02 0.0044 27.4 6.5 54 18-84 83-137 (270)
83 2w1v_A Nitrilase-2, nitrilase 24.0 1.3E+02 0.0043 27.8 6.4 70 186-257 30-110 (276)
84 3qxb_A Putative xylose isomera 23.3 45 0.0015 31.6 3.0 63 19-82 110-173 (316)
85 3qfm_A SAPH, putative uncharac 23.2 49 0.0017 30.9 3.2 36 1-42 9-44 (270)
86 4fva_A 5'-tyrosyl-DNA phosphod 23.1 56 0.0019 29.0 3.5 40 4-46 12-54 (256)
87 1ne7_A Glucosamine-6-phosphate 23.0 60 0.002 30.8 3.8 36 326-363 7-45 (289)
88 3p94_A GDSL-like lipase; serin 23.0 3.1E+02 0.011 23.0 8.4 63 18-83 96-158 (204)
89 2dyu_A Formamidase; AMIF, CEK, 22.9 1.7E+02 0.0058 28.1 7.2 67 190-257 51-131 (334)
90 1fs5_A Glucosamine-6-phosphate 22.4 53 0.0018 30.6 3.3 36 326-363 7-45 (266)
91 1t1v_A SH3BGRL3, SH3 domain-bi 21.9 2.5E+02 0.0084 20.9 6.7 34 429-463 22-55 (93)
92 2qw5_A Xylose isomerase-like T 21.8 1.8E+02 0.006 27.5 7.1 66 19-84 105-181 (335)
93 1ems_A Nitfhit, NIT-fragIle hi 20.8 2E+02 0.0069 28.6 7.5 72 186-258 41-126 (440)
94 3aal_A Probable endonuclease 4 20.6 1.4E+02 0.0048 27.8 6.0 58 18-83 89-146 (303)
95 3ktc_A Xylose isomerase; putat 20.3 1.8E+02 0.0062 27.5 6.8 59 19-78 103-161 (333)
96 2qul_A D-tagatose 3-epimerase; 20.0 75 0.0026 29.2 3.8 65 19-84 84-150 (290)
97 1qtw_A Endonuclease IV; DNA re 20.0 2.9E+02 0.0098 25.0 8.0 59 19-84 85-143 (285)
98 1y89_A DEVB protein; structura 20.0 43 0.0015 30.8 2.0 38 326-368 8-45 (238)
No 1
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=2.4e-81 Score=683.06 Aligned_cols=420 Identities=28% Similarity=0.426 Sum_probs=359.9
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCC
Q 011602 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (481)
Q Consensus 1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (481)
|++||||++|+++.++|+++|++++.+++++|+++|||||||||+++|||++.|++..+++.+.+.++|++|++++ .+
T Consensus 3 M~~~rVA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~~~~~~~~~~~~l~~la~~~--~~ 80 (634)
T 3ilv_A 3 LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDWVAETAIEYCFEIAASC--TD 80 (634)
T ss_dssp -CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGSHHHHHHHHHHHHHHHTTC--TT
T ss_pred CCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCChHHHhhChhhhHHHHHHHHHHHHhC--CC
Confidence 6789999999999999999999999999999999999999999999999999999888888888888899999873 38
Q ss_pred eEEEEcceeeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccce
Q 011602 81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGYG 160 (481)
Q Consensus 81 i~iivG~~~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~~ 160 (481)
+++++|+|++.++++||+++++.+|++++.|+|+|||+|++|+|++||+||+.... +.+ ..++..+|||+.
T Consensus 81 i~ivvG~p~~~~~~lyNsa~vi~~G~il~~y~K~hL~~~~~f~E~r~f~pG~~~~~-~~~--------~~~g~~~p~g~~ 151 (634)
T 3ilv_A 81 ITVSLGLPMRIAGITYNCVCLVENGIVKGFSAKQFLANEGVHYETRWFTAWPRNHT-TTF--------LYNDVKYPFGDV 151 (634)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEETTEEEEEEECSSCCCSTTCCGGGTCCCCCTTCE-EEE--------EETTEEEEEESC
T ss_pred CEEEEeeeEeeCCCccEEEEEEECCeEEEEEcCEeCCCCCCcChhhhcCCCCcccc-cee--------cccCcccccCCe
Confidence 99999999999999999999999999999999999999999999999999986411 111 135678899988
Q ss_pred eEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCCcee
Q 011602 161 FIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGGRLY 240 (481)
Q Consensus 161 vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 240 (481)
+|+++++|||++||||+|||+.+++.++.+|||+|++||+||+..|+..+|..++++||++|+++||+||++|.++++.+
T Consensus 152 vf~~~g~~iG~~IC~D~~fPe~~~r~la~~GAdii~~psas~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~ 231 (634)
T 3ilv_A 152 LYNVKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRMI 231 (634)
T ss_dssp CEEETTEEEEECCTTC----------CGGGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEECEEESSSSCE
T ss_pred EEEECCEEEEEEEeccccCChHHHHHHHHCCCcEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEcCccCCCCceE
Confidence 99999999999999999999768889999999999999999999998889999999999999999999999998877899
Q ss_pred eeccEEEEeCCcEEEeecCCCCCceeEEEEEeecchhhhhhcccCchhhhccccCCCceeeeeccccCCCccccCCCCCc
Q 011602 241 FDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPYNLCQPFNLKMSLSSPL 320 (481)
Q Consensus 241 f~G~S~I~p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (481)
|+|+|+|+|+|+++++++.|+++++++++++||++.++..|.+. +
T Consensus 232 f~G~S~I~p~G~vla~~~~f~~~~~~vi~a~iDl~~~~~~R~~~----------------------~------------- 276 (634)
T 3ilv_A 232 YDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATDSAETPETVL----------------------T------------- 276 (634)
T ss_dssp EECCEEEEETTEEEEECCSSCSSSEEEEEEEEEC----------------------------------------------
T ss_pred EcceEEEEcCCeEEEECCCCCCCCceEEEEEEEhHHhHHHHhcC----------------------C-------------
Confidence 99999999999999999999854578999999999887655421 0
Q ss_pred cCCCCCChHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHH-----Hhcc
Q 011602 321 KINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAI-----RIGH 395 (481)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~-----~~~~ 395 (481)
..++++.||++.++++||||||+|+|+++++||||||+|||++|+|++.||+++++++| +++|.+++. +++.
T Consensus 277 -~~~~~~~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG--~~~v~~~~~~~~~~~~~~ 353 (634)
T 3ilv_A 277 -QDDLEKEFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELG--LTAFLQKSNMETLFDLPA 353 (634)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHTCGGGCCSSC
T ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhC--chhhhhhhhccccccccc
Confidence 11456789999999999999999999999999999999999999999999999999996 888887765 3433
Q ss_pred CCCCCCCCChHhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHhhCCCCcee
Q 011602 396 YANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGKRPCYK 469 (481)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 469 (481)
......|.+++++|+.+++|||||+.+|++.+.++|+++|+.||++|+++||+++++++.+.+...+|++|.|.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~~~~~~~~~~~~~~g~~p~~~ 427 (634)
T 3ilv_A 354 LQHLPFEEQAKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDEEIEQYKATIENVIERPLTWE 427 (634)
T ss_dssp SSCTTSHHHHHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHHHHHHHHHTTSCCCTT
T ss_pred ccccccccchhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHHHHHHHHHHHHHhhCCCcccc
Confidence 33333455789999999999999999999999999999999999999999999999999999999999887665
No 2
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=100.00 E-value=5.2e-76 Score=632.37 Aligned_cols=357 Identities=23% Similarity=0.290 Sum_probs=322.4
Q ss_pred ceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccC-CCe
Q 011602 3 LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWT-DGI 81 (481)
Q Consensus 3 ~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~-~~i 81 (481)
+||||++|+|+++||+++|+++|++++++|+++|||||||||+++|||+++|++.++.+.+.+.+++.+|++.+++ .++
T Consensus 6 kmKIAlaQln~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~ltGY~~~Dl~~~~~~~~~~~~~l~~la~~~~~~~~i 85 (565)
T 4f4h_A 6 KTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPEDLLLRPAFYAASDAALAELAAQLKPFAGL 85 (565)
T ss_dssp CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGCHHHHHHHHHHHHHHHHHHTTSTTC
T ss_pred ceEEEEEECCCCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCcccCCChHHhhhCHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 4999999999999999999999999999999999999999999999999999999999999999999999887543 589
Q ss_pred EEEEcceeeeC----------------CeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchh
Q 011602 82 LCSFGMPVIKG----------------SERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNE 145 (481)
Q Consensus 82 ~iivG~~~~~~----------------~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~ 145 (481)
++++|+|++.+ +++||+++++.+|++++.|+|+|||+|+.|+|++||++|+..
T Consensus 86 ~ivvG~p~~~~~~~~~~~~~~~~~~~~~~lyNsa~vi~~G~i~~~y~K~hLp~~~~f~E~r~f~~G~~~----------- 154 (565)
T 4f4h_A 86 AVLVGHPLRAPSADGNANRAIERGVPPVDTYNAASLIVGGEVAGTYRKQDLPNTEVFDEKRYFATDAAP----------- 154 (565)
T ss_dssp EEEEEEEEECC-----CCCCCCTTSCCCSEEEEEEEEETTEEEEEEECCSCCCSTTCCGGGTCCCCCCC-----------
T ss_pred EEEEeeeeeecccccccccceecccCCCceEEEEEEEECCEEEEEEeeeecCCCcccceeccccCCCcc-----------
Confidence 99999988643 359999999999999999999999999999999999999865
Q ss_pred hHhhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcE
Q 011602 146 ISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225 (481)
Q Consensus 146 ~~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~ 225 (481)
.+|+++++|||+.||||+|||+ +.|.++++|||+|++|++||+..||..+|..++++||.+++++
T Consensus 155 --------------~v~~~~g~~iGv~IC~Dlwfpe-~~r~la~~GA~ii~~psAs~~~~gk~~~r~~ll~arA~e~~~~ 219 (565)
T 4f4h_A 155 --------------YVFELNGVKFGVVICEDVWHAS-AAQLAKAAGAQVLIVPNGSPYHMNKDAVRIDILRARIRETGLP 219 (565)
T ss_dssp --------------CEEEETTEEEEECCGGGGGSSH-HHHHHHHTTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHHCCC
T ss_pred --------------eeEEecCcEEEEEEeehhcccc-hhHHHHhCCCeeeecccccccccCcHHHHHHHHHHHHHHhCCc
Confidence 5899999999999999999995 7889999999999999999999999999999999999999999
Q ss_pred EEEEcCccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcccCchhhhccccCCCceeeeec
Q 011602 226 YMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVPY 304 (481)
Q Consensus 226 vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~ 304 (481)
|+|+|++|.+ ++.+|+|+|+|+ |+|+++++++.|+| +++++++|..... . .
T Consensus 220 vvy~N~vG~~-~~~~f~G~S~iidp~G~vla~~~~f~e---~~~~~d~d~~~~~-----~-------------------~ 271 (565)
T 4f4h_A 220 MVYVNLVGGQ-DELVFDGGSFVLDGAGELVAKMPQFEE---GNAIVEFDGARAL-----P-------------------A 271 (565)
T ss_dssp EEEEECEEEE-TTEEEEBCCEEECTTSCEEEECCBSCC---EEEEEEEETTEEC-----C-------------------C
T ss_pred EEEeeeecCC-CCeEEECCcceecCCCcEEEEcccccc---ceEEEEecccccc-----c-------------------c
Confidence 9999999998 789999999999 99999999999975 5778877742110 0 0
Q ss_pred cccCCCccccCCCCCccCCCCCChHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCch
Q 011602 305 NLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDE 384 (481)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~ 384 (481)
.. ....++.+|+++++++|||||++|+|++|++||||||+|||++|+|+ +++++ .+
T Consensus 272 ~~---------------~~~~~~~~~~~~a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la-------~~alg--~~ 327 (565)
T 4f4h_A 272 AI---------------APALSVEAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVA-------VDALG--AE 327 (565)
T ss_dssp CB---------------CCCCCHHHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHH-------HHHHC--GG
T ss_pred cc---------------ccCcchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHH-------HHHhC--Cc
Confidence 00 01235568999999999999999999999999999999999999998 79996 66
Q ss_pred hHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHhhCC
Q 011602 385 QVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTGK 464 (481)
Q Consensus 385 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~ 464 (481)
+ +++++||+.+||+.|.++|++||+.||++|++++|+++++++...+...++.
T Consensus 328 ~---------------------------v~~v~mp~~~ts~~t~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~~ 380 (565)
T 4f4h_A 328 R---------------------------VRAVMMPSRYTAGISTTDAADMARRVGVRYDEIAIAPMFDAFRASLAAEFAG 380 (565)
T ss_dssp G---------------------------EEEEECCCTTCCHHHHHHHHHHHHHHTCEEEECCCHHHHHHHHHHHTTTTTT
T ss_pred c---------------------------EEEEeccccccccchHHHHHHHHHHhCCceeeeecchHHHHHHHHhhhcccC
Confidence 5 6999999999999999999999999999999999999999999988776654
No 3
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=100.00 E-value=1.1e-70 Score=602.05 Aligned_cols=416 Identities=21% Similarity=0.265 Sum_probs=336.8
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCC
Q 011602 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (481)
Q Consensus 1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (481)
|++||||++|+++.++|+++|++++.+++++|+++|||||||||+++|||++.|++.++++.+.+.+.++.|++.+++++
T Consensus 10 ~g~~rVAl~Q~~~~~~D~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~~~~~~~~~~~~l~~l~~~a~~~~ 89 (680)
T 3sdb_A 10 HGFVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAVEDALLDLVTESADLL 89 (680)
T ss_dssp GTEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCGGGGGGGGCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHHHhhCHHHHHhhHHHHHHHHHHhhcCC
Confidence 35699999999999999999999999999999999999999999999999999998888888878888999999888899
Q ss_pred eEEEEcceeeeCCeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccc-
Q 011602 81 ILCSFGMPVIKGSERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY- 159 (481)
Q Consensus 81 i~iivG~~~~~~~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~- 159 (481)
+++++|+|++.++++||++++|++|++++.|+|+|||+|++|+|++||+||+... ..+ . .++..+|||+
T Consensus 90 i~ivvG~p~~~~~~lyNsa~vi~~G~il~~y~K~hL~~~~~f~E~r~F~~G~~~~--~~i-------~-~~g~~vpfg~~ 159 (680)
T 3sdb_A 90 PVLVVGAPLRHRHRIYNTAVVIHRGAVLGVVPKSYLPTYREFYERRQMAPGDGER--GTI-------R-IGGADVAFGTD 159 (680)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEETTEEEEEEECSCCCEETTEEGGGTEECCTTCC--SEE-------E-ETTEEEEBSSC
T ss_pred cEEEEeceEEeCCCceEEEEEEeCCCEEEEEeeecCCCCCccChhhhcCCCCCCC--cee-------e-ecCcccccCCc
Confidence 9999999999999999999999999999999999999999999999999998641 001 1 1345789984
Q ss_pred eeE---eeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCc-cCC
Q 011602 160 GFI---QFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQ-GCD 235 (481)
Q Consensus 160 ~vf---~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~-G~~ 235 (481)
.+| +++++|||+.||||+|||+.+++.++++|||+|++||+||+..|+..+|..+++.++++++++||++|+. |.+
T Consensus 160 ~vf~~~~~~g~riGv~IC~Dl~fPe~~~r~la~~GAdiil~pSasp~~~gk~~~r~~l~~~~aar~~~~yV~a~~~~G~~ 239 (680)
T 3sdb_A 160 LLFAASDLPGFVLHVEIAEDMFVPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGES 239 (680)
T ss_dssp EEEEETTCTTCEEEEEEGGGGGSSSCHHHHHHHHTCCEEEEECCCCCCTTHHHHHHHHHHHHHHHTTSEEEEECCCTTSC
T ss_pred eeEeeeccCCeEEEEEEeccccccccHHHHHHhcCCeEEEEecCCccccCcHHHHHHHHHHHHHHhCCcEEEEECCcccC
Confidence 567 6899999999999999998767899999999999999999999988888888999999998889888884 555
Q ss_pred CCceeeeccEEEEeCCcEEEeecCCCCCceeEEEEEeecchhhhhhcccCchhhhcc----ccCCCceeeeeccccCCCc
Q 011602 236 GGRLYFDGCSCVVVNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQAS----CKTKIPSVAVPYNLCQPFN 311 (481)
Q Consensus 236 ~~~~~f~G~S~I~p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 311 (481)
+++++|+|+|+|+|+|+++++++.|+. ++++++++||++.++..|.+...++.... ....+..+.+. +..+..
T Consensus 240 ~~~l~f~G~S~I~p~G~vla~~~~f~~-~e~ll~adiDl~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 316 (680)
T 3sdb_A 240 TTDLAWDGQTMIWENGALLAESERFPK-GVRRSVADVDTELLRSERLRMGTFDDNRRHHRELTESFRRIDFA--LDPPAG 316 (680)
T ss_dssp CSSCCCCCCEEEEETTEEEEECCSSCS-SCEEEEEEEEHHHHHHHHHHCHHHHHHHHHTHHHHHTCEEEEEC--CCCCCS
T ss_pred CCCeEEeccEEEEcCCEEEEECCCCCC-CCcEEEEEEcHHHHHHHHHhCCchhhhhhhhccccccceeeeee--ccCccc
Confidence 578899999999999999999999843 25899999999999988877644432110 00123333332 221111
Q ss_pred cccCCCCCccCCCCCCh---------HHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcC
Q 011602 312 LKMSLSSPLKINYHSPE---------EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNG 382 (481)
Q Consensus 312 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g 382 (481)
+. .+.++++..||.|. ++++++++.||+||++++|.++++||||||+|||++|++++ ++.+++|.+
T Consensus 317 ~~-~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~----~a~~~lg~~ 391 (680)
T 3sdb_A 317 DI-GLLREVERFPFVPADPQRLQQDCYEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVAT----HAMDREGRP 391 (680)
T ss_dssp CC-CCCSCCCSCTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHH----HHHHHTTCC
T ss_pred cc-cccccccCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHH----HHHHHhCCC
Confidence 11 34566777787773 58899999999999999999999999999999998666552 235566522
Q ss_pred chhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHh
Q 011602 383 DEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTL 461 (481)
Q Consensus 383 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~ 461 (481)
.++ +++++||+.++++.+.++|+++|+.||++|++|||+++++++...+...
T Consensus 392 ~~~---------------------------v~~v~m~~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~l~~~ 443 (680)
T 3sdb_A 392 RSD---------------------------ILAFALPGFATGEHTKNNAIKLARALGVTFSEIDIGDTARLMLHTIGHP 443 (680)
T ss_dssp GGG---------------------------EEEEECCC--------CHHHHHHHHHTCEEEECCCHHHHHHHHHHC---
T ss_pred Cce---------------------------EEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHHhchh
Confidence 233 6899999988999999999999999999999999999999998776543
No 4
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=100.00 E-value=2.7e-68 Score=577.40 Aligned_cols=383 Identities=24% Similarity=0.277 Sum_probs=319.8
Q ss_pred CC-ceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcc--c
Q 011602 1 MR-LLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGD--W 77 (481)
Q Consensus 1 M~-~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~--~ 77 (481)
|. +||||++|+++.++|+++|++++.+++++|+++|||||||||+++|||++.|++..+++.+.+.++|++|++++ .
T Consensus 1 M~~~~rvA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~dl~~~~~~~~~~~~~l~~la~~~~~~ 80 (590)
T 3n05_A 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLAEE 80 (590)
T ss_dssp -CEEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHTTTCSEEECCTTTTTCSCCGGGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCcccccCCChHHHhhCHHHHHHHHHHHHHHHHhhhhc
Confidence 53 69999999999999999999999999999999999999999999999999999888888888889999999885 3
Q ss_pred C-CCeEEEEcceeeeC----------CeeEEEEEEEeCCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhh
Q 011602 78 T-DGILCSFGMPVIKG----------SERYNCQVLCLNRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEI 146 (481)
Q Consensus 78 ~-~~i~iivG~~~~~~----------~~~yNsa~vi~~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~ 146 (481)
+ .++++++|++++.+ +++||++++|++|++++.|+|+|||+|++|+|++||+||+..
T Consensus 81 ~~~~i~ivvG~~~~~~~~~~~~~~~~~~lyNsa~vi~~G~i~~~y~K~~L~~~~~f~E~r~f~~G~~~------------ 148 (590)
T 3n05_A 81 GFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPGDTM------------ 148 (590)
T ss_dssp TCTTSCEEEEEEEECSSCBTTTTBCTTCEEEEEEEEETTEEEEEEECCCCCSSSSCCHHHHCCCCCEE------------
T ss_pred cCCceEEEEeeEEEEcCcccccccccCCeeEEEEEEeCCEEEEEEeCccCCCCCccCccccccCCCcc------------
Confidence 2 35899999998753 379999999999999999999999999999999999999854
Q ss_pred HhhccCceecccceeEeeCCceEEEEeeccCCC-CChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcE
Q 011602 147 SVALKQKSVPFGYGFIQFLDTAVAAEICEELFT-PIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225 (481)
Q Consensus 147 ~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~-pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~ 225 (481)
.+|+++++|||++||||+|| | ++.+.++.+|||+|++|++||+..++..+|..++++||.+|+++
T Consensus 149 -------------~v~~~~g~~iG~~IC~D~~f~p-e~~~~la~~Ga~ii~~psa~p~~~gk~~~~~~l~~~rA~e~~~~ 214 (590)
T 3n05_A 149 -------------PIVRLHGVDIALAICEDLWQDG-GRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCT 214 (590)
T ss_dssp -------------EEEEETTEEEEEEEGGGGGSTT-SHHHHHHHTTCSEEEEEECCBCCCCSSCHHHHHHHHHHHHHTSE
T ss_pred -------------eEEEECCEEEEEEeehhhccCC-hHHHHHHHcCCCEEEEecCCccccCcHHHHHHHHHHHHHHhCCE
Confidence 57999999999999999999 6 57889999999999999999999888888999999999999999
Q ss_pred EEEEcCccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcccCchhhhccccCCCceeeee-
Q 011602 226 YMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSISSFQEQASCKTKIPSVAVP- 303 (481)
Q Consensus 226 vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~~~~~~~~~~~~~~~~~~~~- 303 (481)
+|+||++|.+ ++++|+|+|+|+ |+|+++++++.|+| ++++++||++.++..+.. ...+.... ...+.++
T Consensus 215 vv~an~~G~~-~~~~f~G~S~iidp~G~vla~~~~~~e---~~~~~didl~~~~~~~~~-~~~~~~~~----~~~~~~~~ 285 (590)
T 3n05_A 215 TAYLAMIGGQ-DELVFDGDSIVVDRDGEVVARAPQFSE---GCVVLDLDLPAAEAEPPT-GVVDDGLR----IDRLVISE 285 (590)
T ss_dssp EEEEECEEEE-TTEEEEBCCEEECTTSCEEEECCBTSC---EEEEEEEEECCCCSSCCC-SBCTTSCE----EEEEESCS
T ss_pred EEEEecccCC-CCeEEeCcEEEECCCCcEEEEcCCCCC---cEEEEEEccccccccccc-cccccccc----ccccccCC
Confidence 9999999988 789999999999 99999999998854 799999999876432110 00000000 0000000
Q ss_pred ccccCCCccccCCCCCccCCCCCChHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCc
Q 011602 304 YNLCQPFNLKMSLSSPLKINYHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGD 383 (481)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~ 383 (481)
..++... .........+..+.++++++++.||+||++++|.++++||||||+|||++|+|+ ++++| .
T Consensus 286 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la-------~~alG--~ 352 (590)
T 3n05_A 286 EPLPAYE----AELAGGYADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIA-------CDALG--A 352 (590)
T ss_dssp SCCCCCC----CCCCCCBCCCCCHHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHH-------HHHHC--G
T ss_pred CCCCccc----ccccccccccCCcHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHH-------HHHhC--c
Confidence 0000000 000000011345678999999999999999999999999999999999999998 78875 4
Q ss_pred hhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHH
Q 011602 384 EQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLF 458 (481)
Q Consensus 384 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~ 458 (481)
++ +++++||+.++++.+.++|+++|+.||++|+++||++.++.+...+
T Consensus 353 ~~---------------------------v~~v~m~~~~~~~~~~~~A~~la~~lgi~~~~i~i~~~~~~~~~~l 400 (590)
T 3n05_A 353 QN---------------------------VYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASL 400 (590)
T ss_dssp GG---------------------------EEEEECCCSSCCHHHHHHHHHHHHHHTCEEEECCSHHHHHHHHHHH
T ss_pred cc---------------------------EEEEEECCCCCCHHHHHHHHHHHHHcCCcEEEEEChHHHHHHHHHh
Confidence 44 6899999999999999999999999999999999999988876554
No 5
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.1e-47 Score=379.63 Aligned_cols=247 Identities=21% Similarity=0.176 Sum_probs=213.6
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhh-hHHHHHHHHHHhcccCC
Q 011602 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV-THAWECLKDLLLGDWTD 79 (481)
Q Consensus 1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~-~~~~~~l~~la~~~~~~ 79 (481)
+++||||++|+++..+|++.|++++.+++++|+++|||||||||+++|||.+.++....... ....+.|++++++ +
T Consensus 18 ~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~---~ 94 (281)
T 3p8k_A 18 GSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEK---Y 94 (281)
T ss_dssp TSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHH---H
T ss_pred CCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhh---C
Confidence 45799999999999999999999999999999999999999999999999987654333332 3455566666664 7
Q ss_pred CeEEEEcce-eeeCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecc
Q 011602 80 GILCSFGMP-VIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPF 157 (481)
Q Consensus 80 ~i~iivG~~-~~~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpf 157 (481)
++++++|.+ +..++++||++++|+ +|++++.|+|+||+++ |.|.+||++|+...
T Consensus 95 ~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~--f~E~~~f~~G~~~~---------------------- 150 (281)
T 3p8k_A 95 KVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPM--LREHEFLTAGEYVA---------------------- 150 (281)
T ss_dssp TCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEECSCCCTT--TTGGGTCCCCSSCC----------------------
T ss_pred CeEEEEeeeEEccCCcEEEEEEEEcCCCeEEEEEeeEECCCC--cCccccCcCCCCCc----------------------
Confidence 999999974 567899999999998 9999999999999863 68999999998541
Q ss_pred cceeEee-CCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCC
Q 011602 158 GYGFIQF-LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDG 236 (481)
Q Consensus 158 g~~vf~~-~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~ 236 (481)
.+|++ +++|||++||||+|||+ ..|.++.+|||+|++|++|+... ..+|..++++||.||++++++||++|.+
T Consensus 151 --~v~~~~~~~~ig~~IC~D~~fpe-~~r~~~~~Gadli~~psa~~~~~--~~~~~~~~~arA~en~~~vv~~n~~G~~- 224 (281)
T 3p8k_A 151 --EPFQLSDGTYVTQLICYDLRFPE-LLRYPARSGAKIAFYVAQWPMSR--LQHWHSLLKARAIENNMFVIGTNSTGFD- 224 (281)
T ss_dssp --CCEECTTCCEEEEEEGGGGGCTH-HHHHHHHTTCCEEEEEECCBGGG--HHHHHHHHHHHHHHHTSEEEEEECEEEC-
T ss_pred --eeEEeCCCcEEEEEEecCCCCcH-HHHHHHHCCCCEEEECCCCCCcc--HHHHHHHHHHHHHHcCCEEEEEccCcCC-
Confidence 47899 99999999999999995 67899999999999999998643 4567778999999999999999999988
Q ss_pred CceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 237 GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 237 ~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
++..|.|+|+|+ |+|+++++ +.++ +++++++||++.+++.|.+.
T Consensus 225 ~~~~~~G~S~ii~p~G~vl~~-~~~~---e~~l~~~id~~~~~~~R~~~ 269 (281)
T 3p8k_A 225 GNTEYAGHSIVINPNGDLVGE-LNES---ADILTVDLNLNEVEQQRENI 269 (281)
T ss_dssp SSCEEECCCEEECTTSCEEEE-CCSS---CEEEEEEEETHHHHHHHHHS
T ss_pred CCcEEeeeEEEECCCCCEEEe-cCCC---CeEEEEEEcHHHHHHHHHhC
Confidence 678999999999 99999999 6553 47999999999999988754
No 6
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=100.00 E-value=9.4e-48 Score=376.36 Aligned_cols=237 Identities=25% Similarity=0.265 Sum_probs=205.8
Q ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhh-----hHHHHHHHHHHhcccC
Q 011602 4 LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTV-----THAWECLKDLLLGDWT 78 (481)
Q Consensus 4 ~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~-----~~~~~~l~~la~~~~~ 78 (481)
||||++|+++.++|++.|++++.+++++|+++|||||||||+++|||.+.+......+. ....+.+.++++ +
T Consensus 2 ~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~---~ 78 (262)
T 3ivz_A 2 VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVAR---D 78 (262)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHH---H
T ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHH---H
Confidence 99999999999999999999999999999999999999999999999876421111111 134445555555 4
Q ss_pred CCeEEEEcceeeeCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCC-CCCcccccccchhhHhhccCceec
Q 011602 79 DGILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWK-QKDQLEDFQLPNEISVALKQKSVP 156 (481)
Q Consensus 79 ~~i~iivG~~~~~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~-~~~~~~~~~~p~~~~~~~~~~~vp 156 (481)
+++++++|++++.++++||++++|+ +| +++.|+|+||+ |.|.+||++|+ ..
T Consensus 79 ~~~~iv~G~~~~~~~~~yNs~~~i~~~G-~~~~y~K~hL~----~~E~~~f~~G~~~~---------------------- 131 (262)
T 3ivz_A 79 TGVYIVAGTAEKDGDVLYNSAVVVGPRG-FIGKYRKIHLF----YREKFFFEPGDLGF---------------------- 131 (262)
T ss_dssp HCCEEEEEEEEEETTEEEEEEEEEETTE-EEEEEECSSCC----GGGGGTCBCCCSCS----------------------
T ss_pred cCcEEEEeEEEeeCCcEEEEEEEEcCCe-eEEEEeecccC----CchhceEeCCCCCc----------------------
Confidence 7999999999999999999999998 67 99999999996 58999999998 33
Q ss_pred ccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCC
Q 011602 157 FGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDG 236 (481)
Q Consensus 157 fg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~ 236 (481)
.+|+++++|||++||||+|||+ ..|.++.+|||+|++|++|+.. +|..++++||.||++++++||++|.+
T Consensus 132 ---~v~~~~~~~ig~~IC~D~~fpe-~~r~~~~~ga~li~~ps~~~~~-----~~~~~~~~rA~en~~~vv~~n~~G~~- 201 (262)
T 3ivz_A 132 ---RVFDLGFMKVGVMICFDWFFPE-SARTLALKGADVIAHPANLVMP-----YAPRAMPIRALENKVYTVTADRVGEE- 201 (262)
T ss_dssp ---CEEECSSCEEEECCGGGGGSHH-HHHHHHHTTCSEEEEEECCCSS-----CHHHHHHHHHHHHTCEEEEEECCSEE-
T ss_pred ---eEEEECCEEEEEEEecCCCchH-HHHHHHHCCCCEEEEcCCCCch-----HHHHHHHHHHHhcCcEEEEECCCCcC-
Confidence 5899999999999999999995 6789999999999999998763 46678899999999999999999988
Q ss_pred CceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcc
Q 011602 237 GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (481)
Q Consensus 237 ~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~ 283 (481)
++..|.|+|+|+ |+|+++++++.++ +++++++||++.+++.|.+
T Consensus 202 ~~~~~~G~S~ii~p~G~il~~~~~~~---~~~~~~~id~~~~~~~R~~ 246 (262)
T 3ivz_A 202 RGLKFIGKSLIASPKAEVLSMASETE---EEVGVAEIDLSLVRNKRIN 246 (262)
T ss_dssp TTEECCCCCEEECTTSCEEEECCSSC---CEEEEEECCHHHHHCCEEE
T ss_pred CCceEeeeEEEECCCCCEeecCCCCC---ceEEEEEEcHHHHHHHhhc
Confidence 678899999999 9999999998764 3699999999999988864
No 7
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=100.00 E-value=6.6e-48 Score=381.73 Aligned_cols=245 Identities=21% Similarity=0.221 Sum_probs=202.1
Q ss_pred CceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccc-c-chhhhhHHHHHHHHHHhcccCC
Q 011602 2 RLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHF-L-ELDTVTHAWECLKDLLLGDWTD 79 (481)
Q Consensus 2 ~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~-~-~~~~~~~~~~~l~~la~~~~~~ 79 (481)
.+||||++|+++..+|++.|++++.+++++|+++|||||||||+++|||.+.++. . .........+.+.++++ ++
T Consensus 19 ~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~d~~~~~a~~~~~~~~~~l~~~a~---~~ 95 (283)
T 3hkx_A 19 SHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIAR---DR 95 (283)
T ss_dssp EEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHHHHHHHH---HT
T ss_pred CccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHHHHHHhccccCCHHHHHHHHHHH---Hh
Confidence 4699999999999999999999999999999999999999999999999876521 0 01112233444555554 58
Q ss_pred CeEEEEcceeeeC-CeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecc
Q 011602 80 GILCSFGMPVIKG-SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPF 157 (481)
Q Consensus 80 ~i~iivG~~~~~~-~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpf 157 (481)
++++++|++++.+ +++||++++|+ +|++++.|+|+||+++ +|.+||++|+...
T Consensus 96 ~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~---~E~~~f~~G~~~~---------------------- 150 (283)
T 3hkx_A 96 GIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGP---EEKAAFVPGEQPP---------------------- 150 (283)
T ss_dssp TSEEEECCBCSSCTTTCCBEEEEECTTSCEEEEEECSSCCHH---HHHHHSCCCCSCC----------------------
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEEcCCCcEEEEEccccCCCc---CchhhccCCCCCc----------------------
Confidence 9999999998765 89999999999 8999999999999742 5899999998631
Q ss_pred cceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCccCCCC
Q 011602 158 GYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQGCDGG 237 (481)
Q Consensus 158 g~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~ 237 (481)
.+|+++++|||++||||+|||+ ..|.++.+|||+|++|++|+...+ .+|..++++||.||++++++||++|.+ +
T Consensus 151 --~v~~~~~~~ig~~IC~D~~fpe-~~r~l~~~Ga~li~~ps~~~~~~~--~~~~~~~~~rA~en~~~vv~~n~~G~~-~ 224 (283)
T 3hkx_A 151 --PVLSWGGRQLSLLVCYDVEFPE-MVRAAAARGAQLVLVPTALAGDET--SVPGILLPARAVENGITLAYANHCGPE-G 224 (283)
T ss_dssp --CEEEETTEEEEECCGGGGGSHH-HHHHHHHTTCSEEEEECCCBSCCT--HHHHTHHHHHHHHHTCEEEEECBEEEE-T
T ss_pred --eEEEECCEEEEEEEecCcCCHH-HHHHHHHCCCCEEEECCCCCCccc--HHHHHHHHHHHHHhCCEEEEEccccCC-C
Confidence 4799999999999999999995 788999999999999999987654 567788999999999999999999988 6
Q ss_pred ceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 238 RLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 238 ~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
+..|.|+|+|+ |+|+++++++ ++ +++++++||++.+++.|.+.
T Consensus 225 ~~~~~G~S~ii~p~G~vl~~~~-~~---e~~l~a~id~~~~~~~R~~~ 268 (283)
T 3hkx_A 225 GLVFDGGSVVVGPAGQPLGELG-VE---PGLLVVDLPDQSQDAGSDSA 268 (283)
T ss_dssp TEEEECCCEEECTTSCEEEECC-SS---CEEEEEEEEC----------
T ss_pred CeEEeeEEEEECCCCCEEEecC-CC---CeEEEEEECHHHHHHHHHhC
Confidence 78999999999 9999999987 53 47999999999999888653
No 8
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=100.00 E-value=8.1e-47 Score=370.39 Aligned_cols=245 Identities=13% Similarity=0.061 Sum_probs=209.8
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCC
Q 011602 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (481)
Q Consensus 1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (481)
|+.||||++|+++..+|++.|++++.+++++| +.|+|||||||++++||...+......+.....+.+++++++ ++
T Consensus 1 M~~~kva~~Q~~~~~~d~~~n~~~~~~~i~~a-~~gadlvv~PE~~~~gy~~~~~~~a~~~~~~~~~~l~~~a~~---~~ 76 (266)
T 2e11_A 1 MHDLRISLVQGSTRWHDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAAR---LG 76 (266)
T ss_dssp CCCEEEEEEECCCCTTCHHHHHHHHHHHHGGG-TTTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHHH---HT
T ss_pred CCccEEEEEeCCCCcCCHHHHHHHHHHHHHHh-cCCCCEEECCCCccccCChhHHHhhccCCCHHHHHHHHHHHH---hC
Confidence 88899999999999999999999999999999 889999999999999997544333333344455667777764 79
Q ss_pred eEEEEcceeeeCCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhhccCceecccc
Q 011602 81 ILCSFGMPVIKGSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQKSVPFGY 159 (481)
Q Consensus 81 i~iivG~~~~~~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~~~vpfg~ 159 (481)
+++++|++++.++++||++++++ +|+++ .|+|+||+++ ++|.+||++|+..
T Consensus 77 ~~iv~G~~~~~~~~~yNs~~~i~~~G~i~-~y~K~hL~~~--~~E~~~f~~G~~~------------------------- 128 (266)
T 2e11_A 77 AAITGSVQLRTEHGVFNRLLWATPDGALQ-YYDKRHLFRF--GNEHLRYAAGRER------------------------- 128 (266)
T ss_dssp SEEEEEEEEEETTEEEEEEEEECTTSCEE-EEECSSCCGG--GTTTTTSBCCCSC-------------------------
T ss_pred CEEEEeeeEccCCcEEEEEEEECCCCCEE-EEeeeccCCC--cChhhhccCCCCc-------------------------
Confidence 99999999988899999999997 89999 9999999875 4699999999754
Q ss_pred eeEeeCCceEEEEeeccCCCCChHHHHHH---HC---CCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCcc
Q 011602 160 GFIQFLDTAVAAEICEELFTPIPPHADLA---LN---GVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQG 233 (481)
Q Consensus 160 ~vf~~~g~riGv~IC~D~~~pe~~~r~la---~~---Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~G 233 (481)
.+|+++++|||++||||+|||+. .|.++ .+ |||+|++|++|+... ..+|..++++||.||++++++||++|
T Consensus 129 ~v~~~~~~~ig~~ICyD~~fpe~-~r~~~~~~~~~~~ga~~i~~~s~w~~~~--~~~~~~~~~~rA~en~~~vv~an~~G 205 (266)
T 2e11_A 129 LCVEWKGWRINPQVCYDLRFPVF-CRNRFDVERPGQLDFDLQLFVANWPSAR--AYAWKTLLRARAIENLCFVAAVNRVG 205 (266)
T ss_dssp CCEEETTEEEEEEEGGGGGCTTT-TCCCBSSSSTTSBSCSEEEEEECCCGGG--HHHHHHHHHHHHHHTTSEEEEEECEE
T ss_pred eEEEECCEEEEEEEEeccCCHHH-HHHHHhhhhccCCCCcEEEEeCCCCCCc--hHHHHHHHHHHHHhcCcEEEEEcCCc
Confidence 57899999999999999999974 44543 44 999999999998643 34677889999999999999999999
Q ss_pred CCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 234 CDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 234 ~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
.++++..|.|+|+|+ |+|+++++++ ++ +++++++||++.++..|...
T Consensus 206 ~~~~~~~~~G~S~ii~p~G~v~~~~~-~~---e~~l~~~id~~~~~~~R~~~ 253 (266)
T 2e11_A 206 VDGNQLHYAGDSAVIDFLGQPQVEIR-EQ---EQVVTTTISAAALAEHRARF 253 (266)
T ss_dssp ECTTSCEEEEEEEEECTTSCEEEEEE-SS---CEEEEEEECHHHHHHHHHHS
T ss_pred CCCCCceEeeeEEEECCCCceeeecC-CC---CeEEEEEEcHHHHHHHHHhC
Confidence 885568899999999 9999999988 53 47999999999999888754
No 9
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=100.00 E-value=3.1e-46 Score=368.24 Aligned_cols=249 Identities=16% Similarity=0.085 Sum_probs=212.1
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc-hhhhhHHHHHHHHHHhcccCC
Q 011602 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE-LDTVTHAWECLKDLLLGDWTD 79 (481)
Q Consensus 1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~-~~~~~~~~~~l~~la~~~~~~ 79 (481)
|+.||||++|+++. +|++.|++++.+++++|++.|+|||||||++++||.+.+.... ..+.....+.|.+++++ +
T Consensus 1 M~~~~va~vQ~~~~-~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~---~ 76 (276)
T 2w1v_A 1 MSTFRLALIQLQVS-SIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKE---S 76 (276)
T ss_dssp CCEEEEEEEECCCC-SCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHH---H
T ss_pred CCccEEEEEecccc-CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHH---c
Confidence 88999999999965 9999999999999999999999999999999999987654321 11223445556666664 7
Q ss_pred CeEEEEc-ceeeeCCeeEEEEEEEe-CCeEEEEeecccc-----CCCCCcccccceecCCCCCcccccccchhhHhhccC
Q 011602 80 GILCSFG-MPVIKGSERYNCQVLCL-NRKIIMIRPKLWL-----ANDGNYRELRWFTAWKQKDQLEDFQLPNEISVALKQ 152 (481)
Q Consensus 80 ~i~iivG-~~~~~~~~~yNsa~vi~-~G~il~~y~K~~L-----p~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~~~~ 152 (481)
++++++| .+++.++++||++++|+ +|++++.|+|+|| |.+..|.|.+||++|+..
T Consensus 77 ~~~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~vP~~e~~~E~~~f~~G~~~------------------ 138 (276)
T 2w1v_A 77 SIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSF------------------ 138 (276)
T ss_dssp TSEEECCCEEEEETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEGGGTCCCCCCC------------------
T ss_pred CeEEEecceeecCCCcEEEEEEEECCCCcEEEEEecccccCcccCccccccccccccCCCCc------------------
Confidence 9999999 46666889999999998 8999999999999 554446799999999754
Q ss_pred ceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEEEcCc
Q 011602 153 KSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMYSNHQ 232 (481)
Q Consensus 153 ~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~~ 232 (481)
.+|+++++|||++||||+|||+ ..|.++.+|||+|++|++|+...++ .+|..++++||.||++++++||++
T Consensus 139 -------~v~~~~~~~ig~~ICyD~~fpe-~~r~~~~~ga~ll~~ps~~~~~~~~-~~~~~~~~~rA~en~~~vv~~n~~ 209 (276)
T 2w1v_A 139 -------STFDTPYCKVGLGICYDMRFAE-LAQIYAQRGCQLLVYPGAFNLTTGP-AHWELLQRARAVDNQVYVATASPA 209 (276)
T ss_dssp -------CEEECSSCEEEECCGGGGGCHH-HHHHHHHTTEEEEEEECCCCTTHHH-HHHHHHHHHHHHHHTCEEEEECCC
T ss_pred -------eeEEeCCceEEEEEEeccccHH-HHHHHHHcCCCEEEECCcCCCcCCH-HHHHHHHHHHHHHcCcEEEEeccc
Confidence 5789999999999999999995 6789999999999999998875443 467778999999999999999999
Q ss_pred cCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 233 GCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 233 G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
|.++++..|.|+|+|+ |+|+++++++. + +++++++||++.++..|.+.
T Consensus 210 G~~~~~~~~~G~S~ii~p~G~v~~~~~~-~---e~~l~~~id~~~~~~~R~~~ 258 (276)
T 2w1v_A 210 RDDKASYVAWGHSTVVDPWGQVLTKAGT-E---ETILYSDIDLKKLAEIRQQI 258 (276)
T ss_dssp CCTTSSSCCCCCCEEECTTSCEEEECCS-S---SEEEEEEEEHHHHHHHHHHS
T ss_pred ccCCCCceeeeEeEEECCCCCEeEEcCC-C---CeEEEEEEcHHHHHHHHHhC
Confidence 9875578899999999 99999999875 3 47999999999999888754
No 10
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=100.00 E-value=4e-45 Score=364.83 Aligned_cols=249 Identities=18% Similarity=0.210 Sum_probs=203.3
Q ss_pred CceEEEEEeccCCC--CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccc----hhhh-----hHHHHHHH
Q 011602 2 RLLKVATCNLNNWA--LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLE----LDTV-----THAWECLK 70 (481)
Q Consensus 2 ~~~rIAl~Q~~~~~--~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~----~~~~-----~~~~~~l~ 70 (481)
+.||||++|+++.. +|++.|++++.+++++|+++|||||||||++++||.+.+++.. ..+. ....+.+.
T Consensus 2 ~~~~va~~Q~~~~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (303)
T 1uf5_A 2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLF 81 (303)
T ss_dssp CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHH
T ss_pred ccEEEEEEEecCcccccCHHHHHHHHHHHHHHHHhcCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCHHHHHHH
Confidence 35999999999887 9999999999999999999999999999999999986543222 1111 12233445
Q ss_pred HHHhcccCCCeEEEEcceeee-CC---eeEEEEEEEe-CCeEEEEeeccccCCCCC------c--ccccceecCC-CCCc
Q 011602 71 DLLLGDWTDGILCSFGMPVIK-GS---ERYNCQVLCL-NRKIIMIRPKLWLANDGN------Y--RELRWFTAWK-QKDQ 136 (481)
Q Consensus 71 ~la~~~~~~~i~iivG~~~~~-~~---~~yNsa~vi~-~G~il~~y~K~~Lp~~~~------~--~E~~~f~~G~-~~~~ 136 (481)
++++ ++++++++|++++. ++ ++||++++|+ +|+++++|+|+|||++++ | .|.+||++|+ ..
T Consensus 82 ~~a~---~~~~~iv~G~~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~e~~p~~~~~~~E~~~f~~G~~~~-- 156 (303)
T 1uf5_A 82 EKAA---ELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGF-- 156 (303)
T ss_dssp HHHH---HHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHHHHCCCCSSCS--
T ss_pred HHHH---HhCeEEEEeeeEecCCCCCcceeeEEEEECCCCCEeeeEeeeecCCcccccccccccccchhhccCCCCCC--
Confidence 5554 58999999998874 45 8999999999 699999999999984443 3 6899999997 43
Q ss_pred ccccccchhhHhhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcc---cCC-----ch
Q 011602 137 LEDFQLPNEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHH---QLR-----KL 208 (481)
Q Consensus 137 ~~~~~~p~~~~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~---~~g-----k~ 208 (481)
.+|+++++|||++||||+|||+ ..|.++.+|||+|++|+++++ ..+ ..
T Consensus 157 -----------------------~v~~~~~~~ig~~ICyD~~fpe-~~r~l~~~ga~ll~~~~~~~~~~~~~~~~~~~~~ 212 (303)
T 1uf5_A 157 -----------------------PVYDVDAAKMGMFIANDRRWPE-AWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTS 212 (303)
T ss_dssp -----------------------CEEEETTEEEEECCGGGGGCHH-HHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHH
T ss_pred -----------------------ceEecCCceEEEEEecCccCHH-HHHHHHHCCCCEEEEecCCccccccccCCccccH
Confidence 5799999999999999999995 678999999999966655443 222 23
Q ss_pred HHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhcc
Q 011602 209 DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGS 283 (481)
Q Consensus 209 ~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~ 283 (481)
.+|..+.++||.||++++++||++|.+ ++..|.|+|+|+ |+|+++++++.++ +++++++||++.++..|..
T Consensus 213 ~~~~~~~~~rA~en~~~vv~~n~~G~~-~~~~~~G~S~ii~p~G~vl~~~~~~~---~~~l~~~id~~~~~~~R~~ 284 (303)
T 1uf5_A 213 FHHLLSMQAGSYQNGAWSAAAGKAGME-ENCMLLGHSCIVAPTGEIVALTTTLE---DEVITAAVDLDRCRELREH 284 (303)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEBCEEE-TTEEECCCCEEECTTSCEEEECCSSS---SEEEEEEEEGGGGHHHHTT
T ss_pred HHHHHHHHhhhhcCCcEEEEECccccc-CCccccceeEEECCCCCEeccCCCCC---CcEEEEEEcHHHHHHHHhh
Confidence 345557899999999999999999987 567899999999 9999999988654 3799999999999988875
No 11
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=100.00 E-value=4.1e-45 Score=362.89 Aligned_cols=248 Identities=19% Similarity=0.159 Sum_probs=206.1
Q ss_pred ceEEEEEeccCCCCCHHHHHHHHHHHHHHH--HHCCCeEEEcCCCCcCCCCCCccccchhhh-----hHHHHHHHHHHhc
Q 011602 3 LLKVATCNLNNWALDFDCNLKNIKESIGRA--KEAGAVIRLGPELEITGYGCEDHFLELDTV-----THAWECLKDLLLG 75 (481)
Q Consensus 3 ~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A--~~~gadLvvfPEl~ltGy~~~d~~~~~~~~-----~~~~~~l~~la~~ 75 (481)
.||||++|+++..+|++.|++++.+++++| ++.|+|||||||++++||...+.....+.. ....+.|.+++++
T Consensus 10 ~~~va~vQ~~~~~~d~~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 89 (291)
T 1f89_A 10 KIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQFLSNLANK 89 (291)
T ss_dssp CEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCHHHHHHHTTBCCSSSCCHHHHHHHHHHHH
T ss_pred cceEEEEeccCCcCCHHHHHHHHHHHHHHHhhccCCCeEEEcCCCcccCCChHHHHHHhhhhccCCCChHHHHHHHHHHH
Confidence 499999999966799999999999999999 889999999999999999765432222222 3345566666664
Q ss_pred ccCCCeEEEEcc-eeeeC--CeeEEEEEEEe-CCeEEEEeeccccC-----CCCCcccccceecCCCCCcccccccchhh
Q 011602 76 DWTDGILCSFGM-PVIKG--SERYNCQVLCL-NRKIIMIRPKLWLA-----NDGNYRELRWFTAWKQKDQLEDFQLPNEI 146 (481)
Q Consensus 76 ~~~~~i~iivG~-~~~~~--~~~yNsa~vi~-~G~il~~y~K~~Lp-----~~~~~~E~~~f~~G~~~~~~~~~~~p~~~ 146 (481)
+++++++|. +++.+ +++||++++|+ +|++++.|+|+||+ .+..|.|.+||++|+..
T Consensus 90 ---~~~~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hLf~e~~P~~~~~~E~~~f~~G~~~------------ 154 (291)
T 1f89_A 90 ---FKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKS------------ 154 (291)
T ss_dssp ---SSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCCC------------
T ss_pred ---cCcEEEeceeecccCCCCceEEEEEEECCCCcEEeEEeeeccCCCccCccccccccccccCCCCC------------
Confidence 799999995 66655 78999999998 89999999999993 33346799999999754
Q ss_pred HhhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEE
Q 011602 147 SVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVY 226 (481)
Q Consensus 147 ~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~v 226 (481)
.+|+++++|||++||||+|||+ ..|.++.+|||+|++|++|+...++ .+|..+.++||.||++++
T Consensus 155 -------------~v~~~~~~~ig~~ICyD~~fpe-~~r~l~~~Ga~ll~~ps~~~~~~~~-~~~~~~~~~rA~en~~~v 219 (291)
T 1f89_A 155 -------------TTIDTKYGKFGVGICYDMRFPE-LAMLSARKGAFAMIYPSAFNTVTGP-LHWHLLARSRAVDNQVYV 219 (291)
T ss_dssp -------------EEEEETTEEEEECCGGGGGCHH-HHHHHHHTTEEEEEEECCCBTTHHH-HHHHHHHHHHHHHHTSEE
T ss_pred -------------ceEecCCeeEEEEEecccCchH-HHHHHHhhCCCEEEECCcCCCCCcH-HHHHHHHHHHHHHcCCEE
Confidence 5789999999999999999995 6788999999999999998865443 466778999999999999
Q ss_pred EEEcCccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 227 MYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 227 v~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
++||++|...++..|.|+|+|+ |+|+++++++. + +++++++||++.++..|.+.
T Consensus 220 v~~n~~G~~~~~~~~~G~S~ii~p~G~vl~~~~~-~---e~~l~~~id~~~~~~~R~~~ 274 (291)
T 1f89_A 220 MLCSPARNLQSSYHAYGHSIVVDPRGKIVAEAGE-G---EEIIYAELDPEVIESFRQAV 274 (291)
T ss_dssp EEECCCCCTTSSSCBCCCCEEECTTSCEEEECCS-S---SEEEEEEECHHHHHHHHHHS
T ss_pred EEecCccCCCCCCeeeeEEEEECCCCCEEEecCC-C---CeEEEEEECHHHHHHHHHhC
Confidence 9999999654678899999999 99999999874 2 47999999999999888653
No 12
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=100.00 E-value=1.4e-43 Score=367.10 Aligned_cols=251 Identities=17% Similarity=0.145 Sum_probs=196.1
Q ss_pred CceEEEEEeccCCC-------CCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCc--c-----ccchhhhhHHHH
Q 011602 2 RLLKVATCNLNNWA-------LDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED--H-----FLELDTVTHAWE 67 (481)
Q Consensus 2 ~~~rIAl~Q~~~~~-------~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d--~-----~~~~~~~~~~~~ 67 (481)
+.||||++|+++.. +|++.|++++.+++++|++.|||||||||++++||.... . +..+.......+
T Consensus 71 ~~~rVAlvQ~~i~~~~~~~~~~d~~~nl~~~~~li~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~~~~~~~~ 150 (405)
T 2vhh_A 71 RIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTK 150 (405)
T ss_dssp CEEEEEEEECCCCSCSSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSHHHH
T ss_pred CCCEEEEEeccccccccccccccHHHHHHHHHHHHHHHHHCCCCEEEcCCcccccccccccchhhHHHHHhhccCCHHHH
Confidence 35999999998642 578999999999999999999999999999999996421 1 111100123345
Q ss_pred HHHHHHhcccCCCeEEEEcceeee---CCeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccc
Q 011602 68 CLKDLLLGDWTDGILCSFGMPVIK---GSERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLP 143 (481)
Q Consensus 68 ~l~~la~~~~~~~i~iivG~~~~~---~~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p 143 (481)
.|+++|+ ++++++++|++++. ++++||++++|+ +|++++.|+|+|||+++.|.|.+||.+|+...
T Consensus 151 ~l~~lA~---~~~i~Iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hL~~~g~f~E~~~f~~G~~~~-------- 219 (405)
T 2vhh_A 151 MLAELAK---AYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGH-------- 219 (405)
T ss_dssp HHHHHHH---HTTCEEEEEEEEEETTTTTEEEEEEEEECTTSCEEEEEECSCCCC----------CCCCSCC--------
T ss_pred HHHHHHH---HCCEEEEEeceecccCCCCcEEEEEEEECCCCeEEEEEecccCCCCCCcCcccceeCCCCCC--------
Confidence 5666665 48999999999876 578999999999 89999999999999998899999999997421
Q ss_pred hhhHhhccCceecccceeEeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcC
Q 011602 144 NEISVALKQKSVPFGYGFIQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRG 223 (481)
Q Consensus 144 ~~~~~~~~~~~vpfg~~vf~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~ 223 (481)
.+|+++++|||++||||+|||+ ..|.++.+|||+|++|++|+...+ ..+|..++++||.+|+
T Consensus 220 ----------------~vf~~~~~riG~~ICyD~~fPe-~~r~la~~GAdill~psa~~~~~~-~~~w~~l~raRAiEn~ 281 (405)
T 2vhh_A 220 ----------------PVFETEFGKLAVNICYGRHHPQ-NWMMFGLNGAEIVFNPSATIGRLS-EPLWSIEARNAAIANS 281 (405)
T ss_dssp ----------------CEEEETTEEEEECCGGGGGCHH-HHHHHHHTTCSEEEEEECCBCTTT-HHHHHHHHHHHHHHHT
T ss_pred ----------------eeEEECCEEEEEEEeccccChH-HHHHHHHcCCCEEEEcccCCCCCC-HHHHHHHHHHHHHHcC
Confidence 5799999999999999999995 567899999999999999875443 3467778899999999
Q ss_pred cEEEEEcCccCCC---------------CceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 224 GVYMYSNHQGCDG---------------GRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 224 ~~vv~aN~~G~~~---------------~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
+++++||++|.+. +...|.|+|+|+ |+|+++++++.++ +++++++||++.++..|.+.
T Consensus 282 ~~Vv~aN~vG~~~~~~~~~~~~g~~~~~~~~~f~G~S~IidP~G~vla~~~~~~---e~il~aeiDl~~~~~~R~~~ 355 (405)
T 2vhh_A 282 YFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDK---DGLLVVELDLNLCRQVKDFW 355 (405)
T ss_dssp SEEEEEECEECCCCC-----------------EECCCCCBCTTSCBCCCCCSSS---CEEEEEEEETTHHHHHHHHH
T ss_pred ceEEEeccccccccccccccccCccccccCceeccccceECCCCCEeeccCCCC---CeEEEEEECHHHHHHHHHhC
Confidence 9999999998752 125689999999 9999999987664 47999999999999888653
No 13
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=100.00 E-value=6.7e-44 Score=361.84 Aligned_cols=241 Identities=18% Similarity=0.164 Sum_probs=198.1
Q ss_pred CceEEEEEeccC----CCCCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCcCCCCCC--ccccc-hhhhhHHHHHHHHH
Q 011602 2 RLLKVATCNLNN----WALDFDCNLKNIKESIGRAKE--AGAVIRLGPELEITGYGCE--DHFLE-LDTVTHAWECLKDL 72 (481)
Q Consensus 2 ~~~rIAl~Q~~~----~~~d~~~N~~~i~~~i~~A~~--~gadLvvfPEl~ltGy~~~--d~~~~-~~~~~~~~~~l~~l 72 (481)
..||||++|+++ ..+|++.|++++.+++++|++ .|+|||||||++++||... ++... ........+.|.++
T Consensus 11 ~~~kValvQ~~i~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~~~~~~~l~~~ 90 (341)
T 2uxy_A 11 DTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYDPAEMMETAVAIPGEETEIFSRA 90 (341)
T ss_dssp TEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTBCCCSHHHHHHHCBCSSSHHHHHHHHH
T ss_pred CccEEEEEECCcccCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcccccCCCHHHHHHHhccCCCHHHHHHHHH
Confidence 359999999994 457999999999999999987 7999999999999998643 11100 00112233344444
Q ss_pred HhcccCCCeEEEEcce-eeeC----CeeEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhh
Q 011602 73 LLGDWTDGILCSFGMP-VIKG----SERYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEI 146 (481)
Q Consensus 73 a~~~~~~~i~iivG~~-~~~~----~~~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~ 146 (481)
+ +++++++++|++ ++.+ +++||++++|+ +|++++.|+|+||+ .|.++|+||+..
T Consensus 91 a---~~~~i~iv~G~~ge~~~~~~~~~~yNsa~vi~p~G~i~~~Y~K~hlf-----~e~~~f~pG~~~------------ 150 (341)
T 2uxy_A 91 C---RKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPW-----CPIEGWYPGGQT------------ 150 (341)
T ss_dssp H---HHHTCEEEEEEEEECCTTTTSSCCEEEEEEECTTSCEEEEEECSSCC-----TTTCCCBCCCCC------------
T ss_pred H---HHhCcEEEEEeeeeEcCCCCCCceEEEEEEECCCCcEEEEEEeeccC-----CCccceeCCCCc------------
Confidence 4 458999999998 7643 34999999999 89999999999974 466789999754
Q ss_pred HhhccCceecccceeEee-CCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcE
Q 011602 147 SVALKQKSVPFGYGFIQF-LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGV 225 (481)
Q Consensus 147 ~~~~~~~~vpfg~~vf~~-~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~ 225 (481)
.+|++ .|.|||++||||+|||+ ..|.++.+|||+|++|++|++ .+..+|..++++||.||+++
T Consensus 151 -------------~v~~~~~G~riG~~ICyD~~fpe-~~r~l~~~Gadlll~psa~~~--~~~~~~~~l~~arA~En~~~ 214 (341)
T 2uxy_A 151 -------------YVSEGPKGMKISLIIXDDGNYPE-IWRDCAMKGAELIVRCQGYMY--PAKDQQVMMAKAMAWANNCY 214 (341)
T ss_dssp -------------CCEECGGGCEEEEEEGGGGGSHH-HHHHHHHTTCSEEEEEECCBT--TCHHHHHHHHHHHHHHHTCE
T ss_pred -------------eEEECCCCCEEEEEEccCCcCcH-HHHHHHHcCCCEEEEcCCCCC--CcHHHHHHHHHHHHHhCCcE
Confidence 46888 57799999999999995 778999999999999999876 34567888999999999999
Q ss_pred EEEEcCccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhc
Q 011602 226 YMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRG 282 (481)
Q Consensus 226 vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~ 282 (481)
+++||++|.+ ++..|.|+|+|+ |+|+++++++.+++ ++++++||++.++..|.
T Consensus 215 vv~an~~G~~-~~~~~~G~S~Iidp~G~vla~~~~~~e---~il~a~id~~~~~~~R~ 268 (341)
T 2uxy_A 215 VAVANAAGFD-GVYSYFGHSAIIGFDGRTLGECGEEEM---GIQYAQLSLSQIRDARA 268 (341)
T ss_dssp EEEEECEEEC-SSCEEECCCEEECTTSCEEEECCSCTT---CEEEEEEEHHHHHHHHH
T ss_pred EEEECCCCCC-CCceeeeEEEEECCCCCEEEECCCCCC---EEEEEEEcHHHHHHHHh
Confidence 9999999988 678999999999 99999999987643 79999999998887664
No 14
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=100.00 E-value=9.6e-43 Score=352.47 Aligned_cols=243 Identities=20% Similarity=0.186 Sum_probs=199.8
Q ss_pred ceEEEEEeccC----CCCCHHHHHHHHHHHHHHHHH--CCCeEEEcCCCCcCCCCCCccccch---hhhhHHHHHHHHHH
Q 011602 3 LLKVATCNLNN----WALDFDCNLKNIKESIGRAKE--AGAVIRLGPELEITGYGCEDHFLEL---DTVTHAWECLKDLL 73 (481)
Q Consensus 3 ~~rIAl~Q~~~----~~~d~~~N~~~i~~~i~~A~~--~gadLvvfPEl~ltGy~~~d~~~~~---~~~~~~~~~l~~la 73 (481)
.||||++|+++ ..+|++.|++++.+++++|++ .|+|||||||++++||...+..... .......+.|.+++
T Consensus 13 ~~~Va~vQ~~i~~~~~~~d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~~~~~~~l~~~a 92 (334)
T 2dyu_A 13 GFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKETELYAKAC 92 (334)
T ss_dssp CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTCCCTTTTTSGGGCBCSSSHHHHHHHHHH
T ss_pred ccEEEEEecCCccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCccccCCCChhHHHHhhccCCCHHHHHHHHHH
Confidence 59999999984 457999999999999999987 7999999999999998654311110 11123334455555
Q ss_pred hcccCCCeEEEEcceeeeC-Ce--eEEEEEEEe-CCeEEEEeeccccCCCCCcccccceecCCCCCcccccccchhhHhh
Q 011602 74 LGDWTDGILCSFGMPVIKG-SE--RYNCQVLCL-NRKIIMIRPKLWLANDGNYRELRWFTAWKQKDQLEDFQLPNEISVA 149 (481)
Q Consensus 74 ~~~~~~~i~iivG~~~~~~-~~--~yNsa~vi~-~G~il~~y~K~~Lp~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~~ 149 (481)
+ ++++++++|++++.+ ++ +||++++|+ +|++++.|+|+|++ .|.++|++|+...
T Consensus 93 ~---~~~i~iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hlf-----~e~~~f~~G~~~~-------------- 150 (334)
T 2dyu_A 93 K---EAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRKLFPW-----NPIEPWYPGDLGM-------------- 150 (334)
T ss_dssp H---HHTCEEEEEEEECCSSTTSCCEEEEEEECTTSCEEEEEECSSCC-----TTTCCCCCCCSCC--------------
T ss_pred H---HhCeEEEEeeEEECCCCCceeEEEEEEECCCCCEEEEEeeccCC-----CCcccCcCCCCCc--------------
Confidence 4 579999999998753 44 999999999 89999999999974 4667899987531
Q ss_pred ccCceecccceeEee-CCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEEE
Q 011602 150 LKQKSVPFGYGFIQF-LDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYMY 228 (481)
Q Consensus 150 ~~~~~vpfg~~vf~~-~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv~ 228 (481)
++|++ .|.|||++||||+|||| ..|.++.+|||+|++|++|+... ..+|..+.++||.||++++++
T Consensus 151 ----------~v~~~~~g~~iG~~ICyD~~fpe-~~r~~~~~Gadlil~psaw~~~~--~~~~~~~~~arA~En~~~vv~ 217 (334)
T 2dyu_A 151 ----------PVCEGPGGSKLAVCICHDGMIPE-LAREAAYKGCNVYIRISGYSTQV--NDQWILTNRSNAWHNLMYTVS 217 (334)
T ss_dssp ----------CCEECGGGCEEEEEEGGGGGCHH-HHHHHHHTTCSEEEEEESSCTTS--HHHHHHHHHHHHHHHTCEEEE
T ss_pred ----------eeEECCCCCEEEEEEECCCCchH-HHHHHHHcCCCEEEEeCCCCCCc--HHHHHHHHHHHHHhCCCEEEE
Confidence 36887 56799999999999995 67899999999999999987543 357788899999999999999
Q ss_pred EcCccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 229 SNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 229 aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
||++|.+ ++..|.|+|+|+ |+|+++++++.++ +++++++||++.++..|.+.
T Consensus 218 an~~G~~-~~~~~~G~S~Iidp~G~vla~~~~~~---e~il~a~idl~~~~~~R~~~ 270 (334)
T 2dyu_A 218 VNLAGYD-NVFYYFGEGQICNFDGTTLVQGHRNP---WEIVTGEIYPKMADNARLSW 270 (334)
T ss_dssp EECSBSS-SSCCCCCEEEEECTTSCEEEECCCCT---TCEEEEEECHHHHHHHHHHC
T ss_pred ECCCcCC-CCeeeeeEEEEECCCCCEeeecCCCC---CeEEEEEEcHHHHHHHHhhC
Confidence 9999988 678899999999 9999999988764 37999999999999888754
No 15
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=100.00 E-value=1.4e-42 Score=364.22 Aligned_cols=249 Identities=17% Similarity=0.090 Sum_probs=205.8
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcccc--chhhhhHHHHHHHHHHhcccC
Q 011602 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFL--ELDTVTHAWECLKDLLLGDWT 78 (481)
Q Consensus 1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~--~~~~~~~~~~~l~~la~~~~~ 78 (481)
|+.||||++|+++. +|++.|++++.+++++|+++|||||||||++++||...+... ...+.....+.|.++|+ +
T Consensus 12 ~~~~kVa~vQ~~~~-~d~~~nl~~~~~li~~A~~~gadlvv~PE~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~---~ 87 (440)
T 1ems_A 12 TGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRELAR---K 87 (440)
T ss_dssp CSEEEEEEECBCCC-SCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred cCCceEEEEecCCC-CCHHHHHHHHHHHHHHHHHCCCCEEECCCcccccCcchhHHHHhhccCCCHHHHHHHHHHH---H
Confidence 45699999999985 899999999999999999999999999999999987532111 11112223344555554 5
Q ss_pred CCeEEEEccee---e-eCCeeEEEEEEEe-CCeEEEEeecccc-----CCCCCcccccceecCCCCCcccccccchhhHh
Q 011602 79 DGILCSFGMPV---I-KGSERYNCQVLCL-NRKIIMIRPKLWL-----ANDGNYRELRWFTAWKQKDQLEDFQLPNEISV 148 (481)
Q Consensus 79 ~~i~iivG~~~---~-~~~~~yNsa~vi~-~G~il~~y~K~~L-----p~~~~~~E~~~f~~G~~~~~~~~~~~p~~~~~ 148 (481)
+++++++|++. + .++++||++++|+ +|++++.|+|+|| |.+..|.|.+||++|+..
T Consensus 88 ~~i~iv~G~~~~~e~~~~~~~yNs~~~i~~~G~i~~~yrK~hL~~~~~P~~~~~~E~~~f~~G~~~-------------- 153 (440)
T 1ems_A 88 HNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEM-------------- 153 (440)
T ss_dssp TTCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEEGGGTCCCCCSC--------------
T ss_pred cCeEEEeccccccccCCCCcEEEEEEEECCCCcEEEEEeeeeecCccCCCCCcccccccccCCCCC--------------
Confidence 89999999654 3 3578999999998 8999999999999 444456799999999854
Q ss_pred hccCceeccccee-EeeCCceEEEEeeccCCCCChHHHHHHHCCCcEEEccCCCcccCCchHHHHHHHHHHHHHcCcEEE
Q 011602 149 ALKQKSVPFGYGF-IQFLDTAVAAEICEELFTPIPPHADLALNGVEVFMNASGSHHQLRKLDYRIRAFISATHSRGGVYM 227 (481)
Q Consensus 149 ~~~~~~vpfg~~v-f~~~g~riGv~IC~D~~~pe~~~r~la~~Gadlil~psa~~~~~gk~~~~~~l~~~rA~e~~~~vv 227 (481)
.+ |+++++|||++||||+|||+ ..|.++.+|||+|++|++|+...++ .+|..++++||.||+++++
T Consensus 154 -----------~~~~~~~~~~iG~~ICyD~~fpe-~~r~l~~~Ga~il~~psa~~~~~~~-~~~~~~~~arA~En~~~vv 220 (440)
T 1ems_A 154 -----------IPPVDTPIGRLGLSICYDVRFPE-LSLWNRKRGAQLLSFPSAFTLNTGL-AHWETLLRARAIENQCYVV 220 (440)
T ss_dssp -----------CCCEEETTEEECCCCGGGGGCHH-HHHHHHHTTCSEEECCBCCCHHHHH-HHHHHHHHHHHHHHTCEEE
T ss_pred -----------ceeEECCCeeEEEEEeccccChH-HHHHHHHcCCcEEEECCcCCCCCcH-HHHHHHHHHHHHhcCcEEE
Confidence 34 89999999999999999995 6789999999999999999875443 3677789999999999999
Q ss_pred EEcCccCCCCceeeeccEEEE-eCCcEEEeecCCCCCceeEEEEEeecchhhhhhccc
Q 011602 228 YSNHQGCDGGRLYFDGCSCVV-VNGDMIAQGSQFSLKDVEIVVAQVDLDAVAGFRGSI 284 (481)
Q Consensus 228 ~aN~~G~~~~~~~f~G~S~I~-p~G~ila~~~~~~e~~~~v~~a~vDl~~~~~~R~~~ 284 (481)
+||++|.+++...|.|+|+|+ |+|+++++++. ++++++++||++.++..|...
T Consensus 221 ~an~~G~~~~~~~~~G~S~ii~P~G~vla~~~~----~e~il~a~idl~~~~~~R~~~ 274 (440)
T 1ems_A 221 AAAQTGAHNPKRQSYGHSMVVDPWGAVVAQCSE----RVDMCFAEIDLSYVDTLREMQ 274 (440)
T ss_dssp ECBBEEEEETTEEEECCCEEECTTSCEEEECCS----SSCEEEEEEEHHHHHHHHHHS
T ss_pred EecccccCCCCceeeeeeEEECCCCCeeccCCC----CCcEEEEEeCHHHHHHHHHhC
Confidence 999999775568899999999 99999999863 247999999999999888765
No 16
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.62 E-value=1.6e-15 Score=148.58 Aligned_cols=106 Identities=23% Similarity=0.217 Sum_probs=82.6
Q ss_pred CCChHHHhccccchHHHHHHHcC-CCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCC
Q 011602 325 HSPEEEIAFGPGCWLWDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPT 403 (481)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~l~~~~-~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~ 403 (481)
+++.+++.. ++.||+||++++| +++++||||||+|||++|+|+. ++.+++| .+. ++.
T Consensus 17 ~~~~~~i~~-~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L~~----~a~~~lg--~~~---------~~~------ 74 (275)
T 1wxi_A 17 INAEEEIRR-SVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQ----MAINELR--LET---------GNE------ 74 (275)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHH----HHHHHHH--HHH---------CCT------
T ss_pred CCHHHHHHH-HHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHHHH----HHHHHhc--ccc---------ccc------
Confidence 455666666 7999999999999 9999999999999999887772 2244444 210 000
Q ss_pred ChHhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCC-ceEEeehHHHHHHHHHHHHH
Q 011602 404 DSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLSLFQT 460 (481)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~-~~~~i~i~~~~~~~~~~~~~ 460 (481)
+..+++++||. +++.+.++|+++|+.||+ +|+++||+++++.+.+.+..
T Consensus 75 ------~~~v~av~~~~--~~~~~~~dA~~va~~lgi~~~~~i~i~~~~~~~~~~l~~ 124 (275)
T 1wxi_A 75 ------SLQFIAVRLPY--GVQADEQDCQDAIAFIQPDRVLTVNIKGAVLASEQALRE 124 (275)
T ss_dssp ------TCEEEEEECCS--SSCTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHH
T ss_pred ------cceEEEEEeCC--CCccCHHHHHHHHHHcCCCeEEEEecHHHHHHHHHHHHh
Confidence 00168999993 455689999999999999 99999999999999888776
No 17
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=99.62 E-value=1.7e-15 Score=147.98 Aligned_cols=107 Identities=21% Similarity=0.272 Sum_probs=83.0
Q ss_pred CCChHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCC
Q 011602 325 HSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404 (481)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~ 404 (481)
+++.+++.. ++.||+||++++|+++++||||||+|||++|+++ +++++++| .+. + |.
T Consensus 18 ~~~~~~i~~-~v~~L~d~l~~~g~~~vvvglSGGvDSal~a~l~----~~A~~~Lg--~~~---------~------~~- 74 (279)
T 3q4g_A 18 IDPQFEIER-RVAFIKRKLTEARYKSLVLGISGGVDSTTCGRLA----QLAVEELN--QQH---------N------TT- 74 (279)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHH----HHHHHHHH--HHT---------T------CS-
T ss_pred CCHHHHHHH-HHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHH----HHHHHHhC--ccc---------c------cC-
Confidence 355555555 7899999999999999999999999999988776 33356675 220 0 00
Q ss_pred hHhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCC-ceEEeehHHHHHHHHH----HHHHh
Q 011602 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLS----LFQTL 461 (481)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~-~~~~i~i~~~~~~~~~----~~~~~ 461 (481)
...+++++|| ++++.+.++|+++|+.||+ +|++|||+++++++.. .+.+.
T Consensus 75 -----~~~v~av~~p--~~~~~~~~~A~~~a~~lgi~~~~~i~i~~~~~~~~~~~~~~l~~~ 129 (279)
T 3q4g_A 75 -----EYQFIAVRLP--YGEQKDEDEAQLALSFIRPTHSVSVNIKAGVDGLHAASHHALANT 129 (279)
T ss_dssp -----CCEEEEEECC--SSSCSCHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred -----CceEEEEEec--CCChHHHHHHHHHHHHhCCCeEEEEECHHHHHHHHHHHHHHhhhh
Confidence 0116899999 4566778999999999999 8999999999999887 56554
No 18
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.58 E-value=6.1e-15 Score=144.21 Aligned_cols=108 Identities=30% Similarity=0.408 Sum_probs=84.8
Q ss_pred CChHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCCh
Q 011602 326 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDS 405 (481)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~ 405 (481)
++.+++.. ++.||+||++++|.++++||||||+|||++|+|+. ++.+++| .++ +.
T Consensus 17 ~~~~~i~~-~~~~L~d~v~~~g~~~vvvgLSGGvDSsv~a~La~----~a~~~lg--~~~---------~~--------- 71 (271)
T 1kqp_A 17 DPKQEIED-RVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQ----LAVESIR--EEG---------GD--------- 71 (271)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHH----HHHHHHH--HTT---------CC---------
T ss_pred CHHHHHHH-HHHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHHH----HHHHHhc--ccC---------CC---------
Confidence 45556665 79999999999999999999999999999888772 2244554 211 00
Q ss_pred HhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCC-ceEEeehHHHHHHHHHHHHHhhCCC
Q 011602 406 REFAKRIFYTVFMGSENSSQETRMLAKKLADEIGS-WHLDVSIDTVVSAFLSLFQTLTGKR 465 (481)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~-~~~~i~i~~~~~~~~~~~~~~~~~~ 465 (481)
..+++++||. +++.+.++|+++|+.||+ +|++++|+++++.+.+.+...+|.+
T Consensus 72 -----~~v~av~~~~--~~~~d~~~A~~va~~lgi~~~~~i~i~~~~~~~~~~l~~~~~~~ 125 (271)
T 1kqp_A 72 -----AQFIAVRLPH--GTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQ 125 (271)
T ss_dssp -----CEEEEEECCS--SSCTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHHHHSCC
T ss_pred -----ceEEEEEeCC--CCCCCHHHHHHHHHhcCCCeEEEeccHHHHHHHHHHHhhhcCCC
Confidence 0168999983 345679999999999999 9999999999999998888776654
No 19
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=99.57 E-value=6.5e-15 Score=144.03 Aligned_cols=105 Identities=21% Similarity=0.291 Sum_probs=81.1
Q ss_pred CCCChHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCC
Q 011602 324 YHSPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPT 403 (481)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~ 403 (481)
.+++.+++. .++.||+||++++|+++++||||||+||+++++|+. ++++++| .+++ +
T Consensus 23 ~~~~~~~i~-~~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~----~A~daLG--~~~~---------------~- 79 (285)
T 3dpi_A 23 TFDARDEAE-RRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQ----LAVERLR--ASGY---------------D- 79 (285)
T ss_dssp SCCHHHHHH-HHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHH----HHHHHHH--HTTC---------------C-
T ss_pred CCCHHHHHH-HHHHHHHHHHHHcCCCcEEEEccCChhHHHHHHHHH----HHHHHhc--ccCc---------------c-
Confidence 345545555 468999999999999999999999999999877763 3367776 3321 0
Q ss_pred ChHhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhC-CceEEeehHHHHHHHHHHHHH
Q 011602 404 DSREFAKRIFYTVFMGSENSSQETRMLAKKLADEIG-SWHLDVSIDTVVSAFLSLFQT 460 (481)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg-~~~~~i~i~~~~~~~~~~~~~ 460 (481)
..+++++||. +++.+.++|+++|+.+| ++|++|||+++++++.+.+..
T Consensus 80 -------~~viav~~p~--~~~~~~~dA~~~a~~lg~i~~~~i~i~~~~~~~~~~l~~ 128 (285)
T 3dpi_A 80 -------ARFVAMRLPY--GAQHDEADARRALAFVRADETLTVDVKPAADAMLAALAA 128 (285)
T ss_dssp -------CEEEEEECCS--CC---CHHHHHHHHHHCCSEEEECCCHHHHHHHHHHHHH
T ss_pred -------cEEEEEEcCC--CCHHHHHHHHHHHHHcCCCcEEEEEChHHHHHHHHHHHh
Confidence 0158899984 56778899999999999 699999999999999888875
No 20
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.57 E-value=5.1e-15 Score=142.85 Aligned_cols=93 Identities=22% Similarity=0.324 Sum_probs=83.5
Q ss_pred ChHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChH
Q 011602 327 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSR 406 (481)
Q Consensus 327 ~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 406 (481)
..++++++++.||+||++++|.++++||||||+||+++|+++ .+++| .+
T Consensus 5 ~~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~-------~~~~g---~~--------------------- 53 (249)
T 3p52_A 5 DWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLC-------KRALK---EN--------------------- 53 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHH-------HHHHT---TS---------------------
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHH-------HHHcC---Cc---------------------
Confidence 357899999999999999999999999999999999999988 56664 22
Q ss_pred hhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHH
Q 011602 407 EFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLS 456 (481)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~ 456 (481)
+++++||+..+++.+.++|+++|+.+|++|++++|+++++++.+
T Consensus 54 ------v~av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~i~~~~~~~~~ 97 (249)
T 3p52_A 54 ------VFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIK 97 (249)
T ss_dssp ------EEEEECCSCCSSCHHHHHHHHHHHHHTCEEEECCCHHHHHHHHT
T ss_pred ------EEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEECcHHHHHHHH
Confidence 68999999888889999999999999999999999998887754
No 21
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.53 E-value=2.6e-14 Score=137.97 Aligned_cols=99 Identities=28% Similarity=0.331 Sum_probs=85.7
Q ss_pred ChHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChH
Q 011602 327 PEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSR 406 (481)
Q Consensus 327 ~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 406 (481)
..++.++.+..||+||++++|.++++||||||+||+++|+++ .++. .+
T Consensus 8 ~~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~-------~~~~---~~---------------------- 55 (249)
T 3fiu_A 8 SPKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLA-------VKTG---LP---------------------- 55 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHH-------HHTT---SC----------------------
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHH-------HHhC---CC----------------------
Confidence 347888999999999999999999999999999999999988 4543 22
Q ss_pred hhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHHHhhC
Q 011602 407 EFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG 463 (481)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~ 463 (481)
..+++|++.++++.+.++|+++|+.+|++|++++|++.++++.+.+...++
T Consensus 56 ------~~av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~~~~~~~~~~~~~~~~~~ 106 (249)
T 3fiu_A 56 ------TTALILPSDNNQHQDMQDALELIEMLNIEHYTISIQPAYEAFLASTQSFTN 106 (249)
T ss_dssp ------EEEEECCCTTSCHHHHHHHHHHHHHHTCEEEECCCHHHHHHHHHHTGGGC-
T ss_pred ------CEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHHHhhcc
Confidence 249999987788899999999999999999999999999999887765544
No 22
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=99.47 E-value=1.6e-13 Score=133.92 Aligned_cols=94 Identities=23% Similarity=0.217 Sum_probs=82.4
Q ss_pred hHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHh
Q 011602 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (481)
Q Consensus 328 ~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 407 (481)
.++++..+..+|++|+++++.++++|+||||+||+++++++ .++++ .+
T Consensus 5 ~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~~~l~-------~~~~~---~~---------------------- 52 (268)
T 1xng_A 5 YQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLC-------QKVFK---EN---------------------- 52 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHH-------HHHHG---GG----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEccCcHHHHHHHHHH-------HHhCC---CC----------------------
Confidence 47888999999999999999999999999999999999888 55542 22
Q ss_pred hhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHH
Q 011602 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLF 458 (481)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~ 458 (481)
+++++||+.++++.+.++|+++|+.+|++|++++|++.++.+.+.+
T Consensus 53 -----v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~~ 98 (268)
T 1xng_A 53 -----AHALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSHF 98 (268)
T ss_dssp -----EEEEECCCSSSCHHHHHHHHHHHHHHTCCEEECCCHHHHHHHHHHC
T ss_pred -----EEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHh
Confidence 6899999888888999999999999999999999999887766543
No 23
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.31 E-value=6.8e-12 Score=121.65 Aligned_cols=90 Identities=21% Similarity=0.317 Sum_probs=75.5
Q ss_pred hHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHh
Q 011602 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (481)
Q Consensus 328 ~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 407 (481)
.+++++.+..+|++| |.++++|+||||+||+++++++ .++++ +.+
T Consensus 6 ~~~~~~~l~~~i~~~----~~~~vvv~lSGGiDSs~~~~l~-------~~~~g--~~~---------------------- 50 (257)
T 2e18_A 6 YDKVIERILEFIREK----GNNGVVIGISGGVDSATVAYLA-------TKALG--KEK---------------------- 50 (257)
T ss_dssp HHHHHHHHHHHHHHH----CTTCEEEECCSSHHHHHHHHHH-------HHHHC--GGG----------------------
T ss_pred HHHHHHHHHHHHHHh----CCCcEEEEecCCHHHHHHHHHH-------HHhcC--CCc----------------------
Confidence 367888889999998 7899999999999999999888 56653 233
Q ss_pred hhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHHHHHHHH
Q 011602 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSAFLSLFQ 459 (481)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~ 459 (481)
+++++|++.. + .+.++|+++|+.+|++|++++|++.++.+.+.+.
T Consensus 51 -----v~av~~~~~~-~-~~~~~a~~~a~~lgi~~~~i~i~~~~~~~~~~l~ 95 (257)
T 2e18_A 51 -----VLGLIMPYFE-N-KDVEDAKLVAEKLGIGYKVINIKPIVDSFVENLE 95 (257)
T ss_dssp -----EEEEECCSSC-S-THHHHHHHHHHHHTCEEEECCCHHHHHHHHHHHC
T ss_pred -----EEEEEeCCCC-c-hHHHHHHHHHHHhCCCEEEEEChHHHHHHHHHhc
Confidence 6899999864 4 7899999999999999999999998877765543
No 24
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=98.80 E-value=5.5e-09 Score=114.24 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=73.4
Q ss_pred hHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHh
Q 011602 328 EEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSRE 407 (481)
Q Consensus 328 ~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~ 407 (481)
.+++++.+..+|++|+. .++++++||||+||+++|+|+ .+++| +.+
T Consensus 223 ~~~~~~~~i~~Ir~~v~---~~~vvv~lSGGvDSsVla~Ll-------~~alG--~~~---------------------- 268 (697)
T 2vxo_A 223 VQNRELECIREIKERVG---TSKVLVLLSGGVDSTVCTALL-------NRALN--QEQ---------------------- 268 (697)
T ss_dssp HHHHHHHHHHHHHHHHT---TCEEEEECCSSHHHHHHHHHH-------HHHSC--GGG----------------------
T ss_pred hhHHHHHHHHHHHHHhc---ccceEEEccCchHHHHHHHHH-------HHhcC--Cce----------------------
Confidence 46777788889999985 379999999999999999998 67764 344
Q ss_pred hhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHHHH
Q 011602 408 FAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVVSA 453 (481)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~~~ 453 (481)
+++++|+....++.+.++|+++|+.+|++|+.+|+++.+..
T Consensus 269 -----V~aV~vd~g~~~~~e~e~a~~~a~~lGI~~~vvdi~~~f~~ 309 (697)
T 2vxo_A 269 -----VIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAAHSFYN 309 (697)
T ss_dssp -----EEEEEEECSCCCSSTTHHHHHHHHHTTCCEEEEECHHHHHT
T ss_pred -----EEEEEeccccCCcchHHHHHHHHHHhCCcEEEecchHHHHh
Confidence 68999998777667789999999999999999999987644
No 25
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.61 E-value=5.1e-08 Score=103.71 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=66.6
Q ss_pred HHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhh
Q 011602 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (481)
Q Consensus 329 ~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~ 408 (481)
+++...+..+|++++++ ++++++||||+||+++|+++ .+++| .+
T Consensus 211 ~~~~~~~~~~ir~~v~~---~~vvvalSGGvDSsv~a~ll-------~~a~G---~~----------------------- 254 (525)
T 1gpm_A 211 AKIIDDAVARIREQVGD---DKVILGLSGGVDSSVTAMLL-------HRAIG---KN----------------------- 254 (525)
T ss_dssp HHHHHHHHHHHHHHHTT---CEEEEECCSSHHHHHHHHHH-------HHHHG---GG-----------------------
T ss_pred HHHHHhhhhhhhhhhcc---cceEEEecCCCCHHHHHHHH-------HHHhC---CC-----------------------
Confidence 56666777788888754 79999999999999998888 56665 23
Q ss_pred hcceEEEEecCCCCCcHHhHHHHHH-HHHHhCCceEEeehHHHH
Q 011602 409 AKRIFYTVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~a~~-la~~lg~~~~~i~i~~~~ 451 (481)
++++++++...++.+.++|.+ +|+.+|++|+.+++++.+
T Consensus 255 ----v~av~v~~g~~~~~e~~~~~~~la~~lgi~~~~v~~~~~f 294 (525)
T 1gpm_A 255 ----LTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRF 294 (525)
T ss_dssp ----EEEEEEECSCSCTTHHHHHHHHHTTTTCCCEEEEECHHHH
T ss_pred ----EEEEEEeCCCCCchHHHHHHHHHHHHhCCcEEEEeccHHH
Confidence 689999876655566677755 899999999999998754
No 26
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=98.55 E-value=1.1e-07 Score=94.24 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=63.0
Q ss_pred HHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhh
Q 011602 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (481)
Q Consensus 329 ~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~ 408 (481)
+.+......+|++++. .++++++||||+||+++|.++ .+++| .+
T Consensus 4 ~~~~~~~~~~ir~~v~---~~kvlvalSGGvDSsvla~ll-------~~~~g---~~----------------------- 47 (308)
T 2dpl_A 4 GRFVEEKVREIRETVG---DSKAIIALSGGVDSSTAAVLA-------HKAIG---DR----------------------- 47 (308)
T ss_dssp HHHHHHHHHHHHHHHT---TSCEEEECCSSHHHHHHHHHH-------HHHHG---GG-----------------------
T ss_pred HHHHHHHHHHHHHHhC---CCCEEEEEeChHHHHHHHHHH-------HHhhC---CC-----------------------
Confidence 4566677888899885 378999999999999998888 55554 22
Q ss_pred hcceEEEEecCCCCCcHHhHHHHHH-HHHHhCCceEEeehHHH
Q 011602 409 AKRIFYTVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTV 450 (481)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~a~~-la~~lg~~~~~i~i~~~ 450 (481)
++++++.+......+.+.+++ +++.+|++|+.+++++.
T Consensus 48 ----v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~ 86 (308)
T 2dpl_A 48 ----LHAVFVNTGFLRKGEPEFVVKTFRDEFGMNLHYVDAQDR 86 (308)
T ss_dssp ----EEEEEEECSCCCTTHHHHHHHHHTTTTCCEEEEEECHHH
T ss_pred ----EEEEEEcCCCCChHHHHHHHHHHHHHcCCcEEEEECCHH
Confidence 578888765444445566777 66789999999999864
No 27
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=98.46 E-value=3.8e-07 Score=97.55 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=59.3
Q ss_pred HHHHHHcC-CCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEec
Q 011602 340 WDYLRRSG-ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (481)
Q Consensus 340 ~~~l~~~~-~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (481)
.+++|+.| .++++++||||+||+++|+|+ .+++| ++ +++++|
T Consensus 246 i~~ir~~g~~~~vvvalSGGvDSsv~a~ll-------~~~~G---~~---------------------------v~~v~v 288 (556)
T 3uow_A 246 LKNIEKYKHDHYVIAAMSGGIDSTVAAAYT-------HKIFK---ER---------------------------FFGIFI 288 (556)
T ss_dssp HHHHGGGTTTCEEEEECCSSHHHHHHHHHH-------HHHHG---GG---------------------------EEEEEE
T ss_pred eeeeeecCCCceEEEEcccCCCHHHHHHHH-------HHHhC---Ce---------------------------EEEEEE
Confidence 45566656 689999999999999999998 67776 33 689999
Q ss_pred CCCCCcHHhHHHH-HHHHHHh-CCceEEeehHHHH
Q 011602 419 GSENSSQETRMLA-KKLADEI-GSWHLDVSIDTVV 451 (481)
Q Consensus 419 ~~~~~~~~~~~~a-~~la~~l-g~~~~~i~i~~~~ 451 (481)
.+....+.+.+++ +.+|+.+ |++|+.+|+++.+
T Consensus 289 d~g~~~~~e~~~~~~~~~~~l~gi~~~~vd~~~~f 323 (556)
T 3uow_A 289 DNGLLRKNEAENVYTFLKSTFPDMNITKIDASENF 323 (556)
T ss_dssp ECSCSCTTHHHHHHHHHHHHCTTSEEEEEECHHHH
T ss_pred ecCCCChHHHHHHHHHHHHhcCCCCeEEeccHHHH
Confidence 8765444445555 6799999 9999999998765
No 28
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=98.46 E-value=3e-07 Score=93.70 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=55.6
Q ss_pred HHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCC
Q 011602 342 YLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE 421 (481)
Q Consensus 342 ~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (481)
+|++.+.++++|++|||+||+++|.++ .++ | .+ +.+++|...
T Consensus 3 ~~~~~~~~kVlVa~SGGvDSsv~a~lL-------~~~-G--~~----------------------------V~~v~~~~~ 44 (376)
T 2hma_A 3 AMSDNSKTRVVVGMSGGVDSSVTALLL-------KEQ-G--YD----------------------------VIGIFMKNW 44 (376)
T ss_dssp --CCGGGSEEEEECCSSHHHHHHHHHH-------HHT-T--CE----------------------------EEEEEEECC
T ss_pred hhhhCCCCeEEEEEeCHHHHHHHHHHH-------HHc-C--Cc----------------------------EEEEEEECC
Confidence 455566679999999999999988887 332 2 22 578888653
Q ss_pred C--------CcHHhHHHHHHHHHHhCCceEEeehHHHH
Q 011602 422 N--------SSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 422 ~--------~~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (481)
. ++..+.++|+++|+.||++|+++++++.+
T Consensus 45 ~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~~~~~ 82 (376)
T 2hma_A 45 DDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKEY 82 (376)
T ss_dssp CCCC----CHHHHHHHHHHHHHHHHTCCEEEEECHHHH
T ss_pred CcccccccCCCHHHHHHHHHHHHHhCCcEEEEeChHHH
Confidence 2 25678899999999999999999998755
No 29
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=98.42 E-value=3.8e-07 Score=96.55 Aligned_cols=82 Identities=21% Similarity=0.175 Sum_probs=66.0
Q ss_pred HHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhh
Q 011602 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (481)
Q Consensus 329 ~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~ 408 (481)
+.+......+|++++.. +++++++|||+||+++|.++ .++ | .+
T Consensus 193 ~~~~~~~i~~ir~~~~~---~kvvvalSGGvDSsvla~ll-------~~~-g---~~----------------------- 235 (503)
T 2ywb_A 193 EHVLEELLREVRERAGK---DRVLLAVSGGVDSSTLALLL-------AKA-G---VD----------------------- 235 (503)
T ss_dssp HHHHHHHHHHHHHHHTT---SEEEEEECSSHHHHHHHHHH-------HHH-T---CE-----------------------
T ss_pred hhhhHHHHHhhhhhccC---ccEEEEecCCcchHHHHHHH-------HHc-C---Ce-----------------------
Confidence 45666667788888743 78999999999999998888 454 3 22
Q ss_pred hcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHHHH
Q 011602 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (481)
++++++++....+.+.+.++++|+.+|++|+.+++++.+
T Consensus 236 ----v~av~vd~g~~~~~e~~~v~~~~~~lgi~~~vv~~~~~f 274 (503)
T 2ywb_A 236 ----HLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERF 274 (503)
T ss_dssp ----EEEEEEECSCSCTTHHHHHHHHHHHTTCCEEEEECHHHH
T ss_pred ----EEEEEEeCCCCChHHHHHHHHHHHHhCCCEEEEECcHHH
Confidence 689999876656678899999999999999999998754
No 30
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=98.41 E-value=5e-07 Score=85.70 Aligned_cols=65 Identities=15% Similarity=0.290 Sum_probs=51.3
Q ss_pred CCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHH
Q 011602 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE 426 (481)
Q Consensus 347 ~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (481)
|++++++++|||+||++++.++ .++ + .+ ++++++.....+..
T Consensus 1 ~~~kvvv~lSGG~DS~~~l~ll-------~~~-~---~~---------------------------v~av~~~~g~~~~~ 42 (232)
T 2pg3_A 1 GMKRAVVVFSGGQDSTTCLIQA-------LQD-Y---DD---------------------------VHCITFDYGQRHRA 42 (232)
T ss_dssp -CCEEEEECCSSHHHHHHHHHH-------HHH-C---SE---------------------------EEEEEEESSSSCHH
T ss_pred CCCCEEEEecCcHHHHHHHHHH-------HHc-C---CC---------------------------EEEEEEECCCCCHH
Confidence 4678999999999999988887 343 1 12 57888775544557
Q ss_pred hHHHHHHHHHHhCCc-eEEeehHH
Q 011602 427 TRMLAKKLADEIGSW-HLDVSIDT 449 (481)
Q Consensus 427 ~~~~a~~la~~lg~~-~~~i~i~~ 449 (481)
+.+.|+++|+.+|++ |++++++.
T Consensus 43 e~~~a~~~a~~lgi~~~~vi~~~~ 66 (232)
T 2pg3_A 43 EIEVAQELSQKLGAAAHKVLDVGL 66 (232)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTH
T ss_pred HHHHHHHHHHHhCCCceEEEeChh
Confidence 788999999999999 99999874
No 31
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.30 E-value=9e-07 Score=94.14 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=61.5
Q ss_pred HHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhh
Q 011602 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (481)
Q Consensus 329 ~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~ 408 (481)
+.+.......|++++. .++++++||||+||+++|.++ .+++| .+
T Consensus 214 ~~~~~~~i~~i~~~v~---~~kvlvalSGGvDSsvla~ll-------~~~~G---~~----------------------- 257 (527)
T 3tqi_A 214 KHIIEDSIRDIQEKVG---KEQVIVGLSGGVDSAVTATLV-------HKAIG---DQ----------------------- 257 (527)
T ss_dssp HHHHHHHHHHHHHHHT---TSCEEEECTTTHHHHHHHHHH-------HHHHG---GG-----------------------
T ss_pred HHHHHHHHHHHHHhcC---CCeEEEEEecCcCHHHHHHHH-------HHHhC---Ce-----------------------
Confidence 3444445556666664 379999999999999998888 56665 22
Q ss_pred hcceEEEEecCCCCCcHHhHHHHHH-HHHHhCCceEEeehHHHH
Q 011602 409 AKRIFYTVFMGSENSSQETRMLAKK-LADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~a~~-la~~lg~~~~~i~i~~~~ 451 (481)
++++++.+...++.+.+.+.+ +|+.+|++|+.+++++.+
T Consensus 258 ----v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~~ 297 (527)
T 3tqi_A 258 ----LVCVLVDTGLLRLNEVDEVLNVFQKHLGAKVICVDAKDRF 297 (527)
T ss_dssp ----EEEEEECCSCSCTTHHHHHHHHHTTSSCCEEEEECCHHHH
T ss_pred ----EEEEEeccCCCChhHHHHHHHHHHHHcCCcEEEEeChHHH
Confidence 688998765444445555555 999999999999998764
No 32
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=98.29 E-value=8.9e-07 Score=82.83 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=49.9
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
+++++++|||+||++++.++ .+. + .+ ++++++.....+..+.
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll-------~~~-~---~~---------------------------v~~~~~~~~~~~~~e~ 45 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWA-------LKE-F---EE---------------------------VETVTFHYNQRHSQEV 45 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHH-------HHH-C---SE---------------------------EEEEEEESSCTTCHHH
T ss_pred CCEEEEccCcHHHHHHHHHH-------HHc-C---Cc---------------------------eEEEEEeCCCCCHHHH
Confidence 58999999999999988887 333 2 11 5778876544444678
Q ss_pred HHHHHHHHHhCCceEEeehHH
Q 011602 429 MLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~~ 449 (481)
+.|+++|+.+|++|+++++++
T Consensus 46 ~~a~~~a~~lgi~~~~~~~~~ 66 (219)
T 3bl5_A 46 EVAKSIAEKLGVKNHLLDMSL 66 (219)
T ss_dssp HHHHHHHHTTCCCEEEEECGG
T ss_pred HHHHHHHHHhCCCeEEEeChH
Confidence 899999999999999999886
No 33
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=98.24 E-value=2.5e-06 Score=86.85 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=51.8
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCC------
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN------ 422 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 422 (481)
++++|++|||+||+++|+++ .++ | .+ +.+++|....
T Consensus 18 ~kVvVa~SGGvDSsv~a~lL-------~~~-G--~~----------------------------V~~v~~~~~~~~~~~~ 59 (380)
T 2der_A 18 KKVIVGMSGGVDSSVSAWLL-------QQQ-G--YQ----------------------------VEGLFMKNWEEDDGEE 59 (380)
T ss_dssp CEEEEECCSCSTTHHHHHHH-------HTT-C--CE----------------------------EEEEEEECCCCCSHHH
T ss_pred CEEEEEEEChHHHHHHHHHH-------HHc-C--Ce----------------------------EEEEEEEcCccccccC
Confidence 68999999999999988887 332 2 22 6889986422
Q ss_pred --CcHHhHHHHHHHHHHhCCceEEeehHHHH
Q 011602 423 --SSQETRMLAKKLADEIGSWHLDVSIDTVV 451 (481)
Q Consensus 423 --~~~~~~~~a~~la~~lg~~~~~i~i~~~~ 451 (481)
++..+.++|+++|+.||++|+++++++.+
T Consensus 60 ~~~s~~d~~~a~~va~~LGIp~~vvd~~~~f 90 (380)
T 2der_A 60 YCTAAADLADAQAVCDKLGIELHTVNFAAEY 90 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeCcHHH
Confidence 24678899999999999999999998655
No 34
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=98.22 E-value=1.5e-06 Score=89.01 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=50.6
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
++++|++|||+|||++|+++ .++ | .+ ++|+++-... ..+.
T Consensus 15 ~KVVVA~SGGlDSSv~a~~L-------ke~-G--~e----------------------------Viavt~d~Gq--~~El 54 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWL-------CEK-G--FD----------------------------VIAYVANVGQ--KDDF 54 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHH-------HHT-T--CE----------------------------EEEEEEESSC--CCCH
T ss_pred CCEEEEeCCcHHHHHHHHHH-------HHC-C--Ce----------------------------EEEEEEEcCC--HHHH
Confidence 67999999999999988887 444 3 33 5788886532 2578
Q ss_pred HHHHHHHHHhCC-ceEEeehHHHH
Q 011602 429 MLAKKLADEIGS-WHLDVSIDTVV 451 (481)
Q Consensus 429 ~~a~~la~~lg~-~~~~i~i~~~~ 451 (481)
++|+++|+.+|+ +|+++|+.+.|
T Consensus 55 e~A~~vA~~lGi~~~~VvDl~eef 78 (421)
T 1vl2_A 55 VAIKEKALKTGASKVYVEDLRREF 78 (421)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHH
T ss_pred HHHHHHHHHcCCceEEEEecHHHH
Confidence 999999999999 89999998544
No 35
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=98.07 E-value=3.6e-06 Score=78.23 Aligned_cols=64 Identities=23% Similarity=0.199 Sum_probs=48.0
Q ss_pred CCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHH
Q 011602 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQE 426 (481)
Q Consensus 347 ~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (481)
+++++++++|||+||++++.++ .+ .+ .+ +.++++......
T Consensus 5 ~~~kv~v~~SGG~DS~~ll~ll-------~~-~g--~~----------------------------v~~~~v~~~~~~-- 44 (203)
T 3k32_A 5 KLMDVHVLFSGGKDSSLSAVIL-------KK-LG--YN----------------------------PHLITINFGVIP-- 44 (203)
T ss_dssp -CEEEEEECCCSHHHHHHHHHH-------HH-TT--EE----------------------------EEEEEEECSSSC--
T ss_pred cCCeEEEEEECcHHHHHHHHHH-------HH-cC--CC----------------------------eEEEEEeCCCch--
Confidence 3468999999999999987776 22 22 21 466776543333
Q ss_pred hHHHHHHHHHHhCCceEEeehHHH
Q 011602 427 TRMLAKKLADEIGSWHLDVSIDTV 450 (481)
Q Consensus 427 ~~~~a~~la~~lg~~~~~i~i~~~ 450 (481)
+...|+++|+.+|++|+++++++.
T Consensus 45 ~~~~~~~~a~~lgi~~~~~~~~~~ 68 (203)
T 3k32_A 45 SYKLAEETAKILGFKHKVITLDRK 68 (203)
T ss_dssp TTHHHHHHHHHHTCEEEEEECCTH
T ss_pred HHHHHHHHHHHhCCCEEEEECCHH
Confidence 678999999999999999998764
No 36
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=97.97 E-value=1.1e-05 Score=83.06 Aligned_cols=67 Identities=24% Similarity=0.211 Sum_probs=53.0
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCC-CCcHHh
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSE-NSSQET 427 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (481)
+++++++|||+||++++.++ .+ .| .+ +.++++... ++++.+
T Consensus 188 ~kvlvalSGGvDS~vll~ll-------~~-~G--~~----------------------------v~av~v~~~~~~~~~~ 229 (413)
T 2c5s_A 188 GKVMVLLSGGIDSPVAAYLT-------MK-RG--VS----------------------------VEAVHFHSPPFTSERA 229 (413)
T ss_dssp EEEEEECCSSSHHHHHHHHH-------HH-BT--EE----------------------------EEEEEEECTTTSCHHH
T ss_pred CeEEEEeCCCChHHHHHHHH-------HH-cC--Cc----------------------------EEEEEEeCCCCCCHHH
Confidence 57999999999999988777 22 22 22 578777653 566788
Q ss_pred HHHHHHHHHHh-----CCceEEeehHHHHHH
Q 011602 428 RMLAKKLADEI-----GSWHLDVSIDTVVSA 453 (481)
Q Consensus 428 ~~~a~~la~~l-----g~~~~~i~i~~~~~~ 453 (481)
.+.++++|+.+ |++++.+++++.+..
T Consensus 230 ~~~v~~~a~~l~~~~ggi~~~vv~~~~~~~~ 260 (413)
T 2c5s_A 230 KQKVIDLAQELTKYCKRVTLHLVPFTEVQKT 260 (413)
T ss_dssp HHHHHHHHHHHGGGSSCEEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECcHHHHH
Confidence 88999999999 999999999887654
No 37
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=97.97 E-value=1.7e-05 Score=74.12 Aligned_cols=72 Identities=13% Similarity=0.022 Sum_probs=53.3
Q ss_pred HHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEec
Q 011602 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (481)
Q Consensus 339 l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (481)
|...+++.| ++++|++|||.||++++.|+ .+. + . + +.++++
T Consensus 36 l~~~~~~~~-~~v~Va~SGGkDS~vLL~ll-------~~~-~--~-~---------------------------v~~v~v 76 (215)
T 1sur_A 36 VAWALDNLP-GEYVLSSSFGIQAAVSLHLV-------NQI-R--P-D---------------------------IPVILT 76 (215)
T ss_dssp HHHHHHHCC-SEEEEECCCCTTHHHHHHHH-------HHH-S--T-T---------------------------CEEEEE
T ss_pred HHHHHHHcC-CCEEEEecCCHHHHHHHHHH-------HHh-C--C-C---------------------------CeEEEe
Confidence 334455544 58999999999999988877 333 1 1 1 456776
Q ss_pred CCCCCcHHhHHHHHHHHHHhCCceEEeehHH
Q 011602 419 GSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 419 ~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (481)
-+....+++.+.++++|+.+|++++++..+.
T Consensus 77 d~g~~~~e~~~~v~~~~~~~gi~~~v~~~~~ 107 (215)
T 1sur_A 77 DTGYLFPETYRFIDELTDKLKLNLKVYRATE 107 (215)
T ss_dssp ECSCBCHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred eCCCCCHHHHHHHHHHHHHhCCcEEEEeCCC
Confidence 6555567889999999999999999987653
No 38
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=97.96 E-value=1.2e-05 Score=85.06 Aligned_cols=83 Identities=24% Similarity=0.232 Sum_probs=59.3
Q ss_pred ChHHHhccccchHHHHHHHcC--CCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCC
Q 011602 327 PEEEIAFGPGCWLWDYLRRSG--ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTD 404 (481)
Q Consensus 327 ~~~~~~~~~~~~l~~~l~~~~--~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~ 404 (481)
..++....+...|.+-+++.- -..+.+.||||+||+++|+++ .++.. .+
T Consensus 218 ~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala-------~~~~~----~v------------------ 268 (513)
T 1jgt_A 218 PEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACA-------HRAAG----EL------------------ 268 (513)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHH-------HHHHS----SC------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHH-------HHhCC----Cc------------------
Confidence 345666666777777777642 258999999999999999988 34421 10
Q ss_pred hHhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHH
Q 011602 405 SREFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (481)
..+++.++. ..+...|+++|+.+|++|+++++++
T Consensus 269 -------~tfti~~~~----~~E~~~A~~vA~~lg~~h~~i~i~~ 302 (513)
T 1jgt_A 269 -------DTVSMGTDT----SNEFREARAVVDHLRTRHREITIPT 302 (513)
T ss_dssp -------EEEEEECSS----CCCHHHHHHHHHHHTCEEEEEECCH
T ss_pred -------eEEEcCCCC----CCHHHHHHHHHHHhCCCcEEEECCH
Confidence 023444442 2467899999999999999999875
No 39
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=97.95 E-value=1.1e-05 Score=82.76 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=50.8
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
++++|++|||+||++++.++ .++++ .+ ++++++.... ..+.
T Consensus 1 ~kVvva~SGG~DSsvll~ll-------~~~~g--~~----------------------------V~av~vd~g~--~~e~ 41 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWL-------KETYR--AE----------------------------VIAFTADIGQ--GEEV 41 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHH-------HHHHT--CE----------------------------EEEEEEESSC--SSCH
T ss_pred CcEEEEEeChHHHHHHHHHH-------HHhhC--Cc----------------------------EEEEEEeCCC--HHHH
Confidence 47999999999999988877 45543 22 5788887543 4678
Q ss_pred HHHHHHHHHhCC-ceEEeehHHHH
Q 011602 429 MLAKKLADEIGS-WHLDVSIDTVV 451 (481)
Q Consensus 429 ~~a~~la~~lg~-~~~~i~i~~~~ 451 (481)
+.++++|+.+|+ +++++++++.+
T Consensus 42 e~a~~~A~~lGi~~~~vvd~~~ef 65 (400)
T 1kor_A 42 EEAREKALRTGASKAIALDLKEEF 65 (400)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeCcHHH
Confidence 999999999999 79999998544
No 40
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=97.91 E-value=8.8e-06 Score=84.16 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=50.4
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
++++|++|||+||++++.++ .++ | .+ ++++++-.....+.+.
T Consensus 11 ~KVvVA~SGGlDSSvll~~L-------~e~-G--~e----------------------------Viavtvd~Gq~~~~el 52 (455)
T 1k92_A 11 QRIGIAFSGGLDTSAALLWM-------RQK-G--AV----------------------------PYAYTANLGQPDEEDY 52 (455)
T ss_dssp SEEEEECCSSHHHHHHHHHH-------HHT-T--CE----------------------------EEEEEEECCCTTCSCT
T ss_pred CeEEEEEcChHHHHHHHHHH-------HHc-C--CE----------------------------EEEEEEEcCCCCHHHH
Confidence 68999999999999887777 333 3 32 5777775433334578
Q ss_pred HHHHHHHHHhCC-ceEEeehHHHHH
Q 011602 429 MLAKKLADEIGS-WHLDVSIDTVVS 452 (481)
Q Consensus 429 ~~a~~la~~lg~-~~~~i~i~~~~~ 452 (481)
+.|+++|+.+|+ +|+++|+.+.+.
T Consensus 53 e~a~~~A~~lGi~~~~vvD~~eef~ 77 (455)
T 1k92_A 53 DAIPRRAMEYGAENARLIDCRKQLV 77 (455)
T ss_dssp THHHHHHHHHTCSEEEEEECHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeChHHHH
Confidence 899999999999 899999975443
No 41
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=97.84 E-value=2.6e-05 Score=83.39 Aligned_cols=93 Identities=22% Similarity=0.221 Sum_probs=53.5
Q ss_pred HHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhh
Q 011602 329 EEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREF 408 (481)
Q Consensus 329 ~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~ 408 (481)
+++...+...++.+|+ .-..+.+.||||+||+++|+++ .+... +..... .. +.. + .|
T Consensus 209 ~~lr~~L~~aV~~rl~--sdvpvgv~LSGGlDSS~iaala-------~~~~~---~~~~~~--~~-~~a---~--~~--- 265 (553)
T 1ct9_A 209 NELRQALEDSVKSHLM--SDVPYGVLLSGGLDSSIISAIT-------KKYAA---RRVEDQ--ER-SEA---W--WP--- 265 (553)
T ss_dssp HHHHHHHHHHHHHHTC--CSSCEEEECCSSHHHHHHHHHH-------HHHC-----------------------------
T ss_pred HHHHHHHHHHHHHHhc--CCCceEEeCCCCccHHHHHHHH-------HHhhc---cccccc--cc-ccc---c--cC---
Confidence 4444444444444443 2257999999999999999998 44432 100000 00 000 0 00
Q ss_pred hcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHH
Q 011602 409 AKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (481)
.+++++.....+ .+...|+++|+.||+.|+++++++
T Consensus 266 ---~l~tfsig~~~~--~E~~~A~~vA~~lg~~h~~i~~~~ 301 (553)
T 1ct9_A 266 ---QLHSFAVGLPGS--PDLKAAQEVANHLGTVHHEIHFTV 301 (553)
T ss_dssp ----CEEEEEESTTC--HHHHHHHHHHHHHTCEEEEEECCH
T ss_pred ---ceeEEEecCCCC--cHHHHHHHHHHHhCCCCEEEECCH
Confidence 034555443333 467899999999999999998864
No 42
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=97.81 E-value=1.5e-05 Score=84.27 Aligned_cols=82 Identities=24% Similarity=0.293 Sum_probs=55.2
Q ss_pred hHHHhccccchHHHHHHHc--CCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCCh
Q 011602 328 EEEIAFGPGCWLWDYLRRS--GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDS 405 (481)
Q Consensus 328 ~~~~~~~~~~~l~~~l~~~--~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~ 405 (481)
.++....+...|.+-+++. .-..+.+.||||+||+++|+++ .++. ..
T Consensus 216 ~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala-------~~~~----~~-------------------- 264 (503)
T 1q15_A 216 REPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALA-------SRHF----KK-------------------- 264 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHH-------TTTC----SE--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHH-------HHhC----CC--------------------
Confidence 3455555555555555542 2257999999999999999888 2321 11
Q ss_pred HhhhcceEEEEecCCCCCcHHhHHHHHHHHHHhCCceEEeehHH
Q 011602 406 REFAKRIFYTVFMGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (481)
+.++++.... ..+...|+++|+.+|++|+++++++
T Consensus 265 -------~~~~t~~~~~--~~E~~~A~~vA~~lg~~h~~i~~~~ 299 (503)
T 1q15_A 265 -------LNTYSIGTEL--SNEFEFSQQVADALGTHHQMKILSE 299 (503)
T ss_dssp -------EEEEEEEETT--BCCHHHHHHHHHHHTCEEEEEEECH
T ss_pred -------cEEEEEeCCC--ccHHHHHHHHHHHhCCceEEEECCH
Confidence 3444443222 2467899999999999999999876
No 43
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=97.76 E-value=2.9e-05 Score=79.76 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=48.7
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
++++|++|||+||++++.++ .++ | .+ ++++++..... .+.
T Consensus 6 ~kVvvalSGGlDSsvll~lL-------~e~-G--~e----------------------------V~av~vd~g~~--~e~ 45 (413)
T 2nz2_A 6 GSVVLAYSGGLDTSCILVWL-------KEQ-G--YD----------------------------VIAYLANIGQK--EDF 45 (413)
T ss_dssp EEEEEECCSSHHHHHHHHHH-------HHT-T--EE----------------------------EEEEEEESSCC--CCH
T ss_pred CeEEEEEcChHHHHHHHHHH-------HHc-C--CE----------------------------EEEEEEECCcH--HHH
Confidence 68999999999999987777 333 2 22 57888765332 568
Q ss_pred HHHHHHHHHhCCc-eEEeehHHHH
Q 011602 429 MLAKKLADEIGSW-HLDVSIDTVV 451 (481)
Q Consensus 429 ~~a~~la~~lg~~-~~~i~i~~~~ 451 (481)
+.|+++|+.+|++ ++++++++.+
T Consensus 46 e~a~~~A~~lGi~~~~vvd~~~ef 69 (413)
T 2nz2_A 46 EEARKKALKLGAKKVFIEDVSREF 69 (413)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHH
T ss_pred HHHHHHHHHhCCCEEEEEeChHHH
Confidence 8999999999998 8899997544
No 44
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=97.75 E-value=2.6e-05 Score=73.94 Aligned_cols=66 Identities=17% Similarity=0.088 Sum_probs=42.6
Q ss_pred CCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEec--CCC-CC
Q 011602 347 GASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM--GSE-NS 423 (481)
Q Consensus 347 ~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~ 423 (481)
+..++++++|||.||+++++++ .++ |.+ +.++++ +.. .+
T Consensus 3 ~~MKvvvl~SGGkDSs~al~~l-------~~~---G~e----------------------------V~~L~~~~~~~~~s 44 (237)
T 3rjz_A 3 GLADVAVLYSGGKDSNYALYWA-------IKN---RFS----------------------------VKFLVTMVSENEES 44 (237)
T ss_dssp CCSEEEEECCSSHHHHHHHHHH-------HHT---TCE----------------------------EEEEEEEECC----
T ss_pred CCCEEEEEecCcHHHHHHHHHH-------HHc---CCe----------------------------EEEEEEEcCCCCCc
Confidence 3458999999999999877776 332 343 234422 211 00
Q ss_pred ---cHHhHHHHHHHHHHhCCceEEeehHHH
Q 011602 424 ---SQETRMLAKKLADEIGSWHLDVSIDTV 450 (481)
Q Consensus 424 ---~~~~~~~a~~la~~lg~~~~~i~i~~~ 450 (481)
.....+.|+++|+.+|++++.+++...
T Consensus 45 ~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~ 74 (237)
T 3rjz_A 45 YMYHTINANLTDLQARALGIPLVKGFTQGE 74 (237)
T ss_dssp ----CCSSSHHHHHHHHHTCCEEEEEC---
T ss_pred cccCCccHHHHHHHHHHcCCCEEEEECCCC
Confidence 123356899999999999999999754
No 45
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=97.69 E-value=3.8e-05 Score=76.27 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=47.9
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCC--CcHH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSEN--SSQE 426 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 426 (481)
++++|++|||+||++++.++..+. +.++ .++ +.++++.... .++.
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~----~~~g--~~~---------------------------v~av~vd~g~r~~s~~ 71 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLK----NYFS--LKE---------------------------VALAHFNHMLRESAER 71 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHST----TTTT--CSE---------------------------EEEEEEECCSSTHHHH
T ss_pred CEEEEEecchHHHHHHHHHHHHHH----HHcC--CCE---------------------------EEEEEEECCCCcccHH
Confidence 689999999999999887772110 0011 110 3667765433 2567
Q ss_pred hHHHHHHHHHHhCCceEEeehH
Q 011602 427 TRMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 427 ~~~~a~~la~~lg~~~~~i~i~ 448 (481)
+.+.++++|+.+|+++++++++
T Consensus 72 ~~~~v~~~a~~lgi~~~v~~~~ 93 (317)
T 1wy5_A 72 DEEFCKEFAKERNMKIFVGKED 93 (317)
T ss_dssp HHHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHHcCCcEEEEEEe
Confidence 8889999999999999999875
No 46
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=97.63 E-value=0.0001 Score=70.74 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=49.8
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
++++|++|||.||++++.|+ .+. + . . +.++++-+....++|.
T Consensus 46 ~~v~va~SGG~DS~vLL~ll-------~~~-~--~-~---------------------------v~vv~idtg~~~~et~ 87 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLV-------NQI-R--P-D---------------------------IPVILTDTGYLFPETY 87 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHH-------HHH-S--T-T---------------------------CEEEECCCSCBCHHHH
T ss_pred CCEEEEeCCCHHHHHHHHHH-------HHh-C--C-C---------------------------CeEEEecCCCCCHHHH
Confidence 57999999999999988777 333 1 1 1 4678887766678899
Q ss_pred HHHHHHHHHhCCceEEeehH
Q 011602 429 MLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~ 448 (481)
+.++++++.+|++++++..+
T Consensus 88 ~~~~~~~~~~gi~~~v~~~~ 107 (252)
T 2o8v_A 88 RFIDELTDKLKLNLKVYRAT 107 (252)
T ss_dssp HHHHHHHHHTTCEEEECCCS
T ss_pred HHHHHHHHHhCCceEEEcCC
Confidence 99999999999999988655
No 47
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=97.62 E-value=0.00011 Score=76.10 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=54.6
Q ss_pred chHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEE
Q 011602 337 CWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTV 416 (481)
Q Consensus 337 ~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (481)
.-|.+++.+. ++++||+|||+||++++.++ .+... +. . + ..+.++
T Consensus 4 ~~l~~~l~~~--~~vlVa~SGG~DS~~Ll~ll-------~~~~~---~~-------~-g---------------~~v~av 48 (433)
T 1ni5_A 4 LTLNRQLLTS--RQILVAFSGGLDSTVLLHQL-------VQWRT---EN-------P-G---------------VALRAI 48 (433)
T ss_dssp HHHHHHHTTC--SEEEEECCSBHHHHHHHHHH-------HHHHT---TS-------T-T---------------CEEEEE
T ss_pred hhHHHhcCCC--CEEEEEEcchHHHHHHHHHH-------HHHHH---hc-------C-C---------------CeEEEE
Confidence 3466777654 68999999999999887777 23211 00 0 0 015778
Q ss_pred ecCCCC--CcHHhHHHHHHHHHHhCCceEEeehHH
Q 011602 417 FMGSEN--SSQETRMLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 417 ~~~~~~--~~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (481)
++.... .++.+...++++|+.+|++|++++++.
T Consensus 49 hvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~~~~ 83 (433)
T 1ni5_A 49 HVHHGLSANADAWVTHCENVCQQWQVPLVVERVQL 83 (433)
T ss_dssp EECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred EEECCCCcccHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 876432 356678899999999999999987753
No 48
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=97.60 E-value=0.00012 Score=76.48 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=52.2
Q ss_pred HHHHHHcC----CCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEE
Q 011602 340 WDYLRRSG----ASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYT 415 (481)
Q Consensus 340 ~~~l~~~~----~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (481)
.+++++.+ .++++||+|||.||++++.++..+. +..+ .+ +.+
T Consensus 6 ~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~----~~~~--~~----------------------------v~a 51 (464)
T 3a2k_A 6 RAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLR----DEWK--LQ----------------------------VIA 51 (464)
T ss_dssp HHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHH----HTTT--CB----------------------------CEE
T ss_pred HHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHH----HHcC--Ce----------------------------EEE
Confidence 34555543 3679999999999998887773211 1111 11 577
Q ss_pred EecCCCCC---cHHhHHHHHHHHHHhCCceEEeehH
Q 011602 416 VFMGSENS---SQETRMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 416 ~~~~~~~~---~~~~~~~a~~la~~lg~~~~~i~i~ 448 (481)
+++..... ++.+.+.++++|+.+|++|++++++
T Consensus 52 vhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~~~ 87 (464)
T 3a2k_A 52 AHVDHMFRGRESEEEMEFVKRFCVERRILCETAQID 87 (464)
T ss_dssp EEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred EEEECCCCccccHHHHHHHHHHHHHcCCcEEEEEec
Confidence 77764433 4567889999999999999998875
No 49
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=97.36 E-value=0.00034 Score=69.01 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=49.6
Q ss_pred CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEecCCCCCcHHhH
Q 011602 349 SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFMGSENSSQETR 428 (481)
Q Consensus 349 ~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (481)
++++++||| +||+++|+++ .++ |.+ +++++|- .++.+.
T Consensus 180 ~kvlvllSG-vDS~vaa~ll-------~~~---G~~----------------------------v~~v~~~---~~~~~~ 217 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLM-------MKR---GVE----------------------------VIPVYIG---KDDKNL 217 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHH-------HHB---TCE----------------------------EEEEEES---CSSHHH
T ss_pred CcEEEEEeC-CcHHHHHHHH-------HhC---CCe----------------------------EEEEEEE---ECHHHH
Confidence 479999999 9999988877 222 333 6889887 355678
Q ss_pred HHHHHHHHHh-------CCceEEee-hHHHH
Q 011602 429 MLAKKLADEI-------GSWHLDVS-IDTVV 451 (481)
Q Consensus 429 ~~a~~la~~l-------g~~~~~i~-i~~~~ 451 (481)
+.|+++|+.| |++++.+| ..+.+
T Consensus 218 ~~a~~~a~~l~~~~~~~~i~~~vv~~~~~~~ 248 (307)
T 1vbk_A 218 EKVRSLWNLLKRYSYGSKGFLVVAESFDRVL 248 (307)
T ss_dssp HHHHHHHHHHHTTCTTSCCCCEEESSHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCcEEEeCCCHHHH
Confidence 8999999999 99999999 98777
No 50
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=97.18 E-value=0.00083 Score=66.78 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=54.4
Q ss_pred hHHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEe
Q 011602 338 WLWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVF 417 (481)
Q Consensus 338 ~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (481)
-|+..+.+. ++++|++|||.||++++.|+ .+++..+... +.+++
T Consensus 38 ilr~~~~~~--~~ivVa~SGGkDS~vLL~Ll-------~~~~~~~~~~---------------------------i~vv~ 81 (325)
T 1zun_A 38 IIREVAAEF--DNPVMLYSIGKDSAVMLHLA-------RKAFFPGKLP---------------------------FPVMH 81 (325)
T ss_dssp HHHHHHHHC--SSEEEECCSSHHHHHHHHHH-------HHHHTTSCCS---------------------------SCEEE
T ss_pred HHHHHHHhC--CCEEEEEcChHHHHHHHHHH-------HHhccccCCC---------------------------EEEEE
Confidence 344455553 68999999999999988888 4544210001 35677
Q ss_pred cCCCCCcHHhHHHHHHHHHHhCCceEEeehHH
Q 011602 418 MGSENSSQETRMLAKKLADEIGSWHLDVSIDT 449 (481)
Q Consensus 418 ~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~~ 449 (481)
.-+....+++.+.++++|+.+|++++++..+.
T Consensus 82 vDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~ 113 (325)
T 1zun_A 82 VDTRWKFQEMYRFRDQMVEEMGLDLITHINPD 113 (325)
T ss_dssp ECCSCCCHHHHHHHHHHHHTTTCCEEEECC--
T ss_pred EECCCCCHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 76666678899999999999999999987654
No 51
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.0015 Score=64.39 Aligned_cols=88 Identities=13% Similarity=0.148 Sum_probs=55.6
Q ss_pred HHHHHcCC--CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCC----CCCCChHhhhcceEE
Q 011602 341 DYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANG----EFPTDSREFAKRIFY 414 (481)
Q Consensus 341 ~~l~~~~~--~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 414 (481)
+.+++.+. +.++|++|||.||++++.|+ .++++ +.... .....+.+ .++ ...+.
T Consensus 44 ~~~~~~~~~~~~i~vafSGGKDS~VLL~L~-------~~~l~---~~~~~---~~~~~~~~~~~~~~~-------~~~i~ 103 (306)
T 2wsi_A 44 EIFVRWSPLNGEISFSYNGGKDCQVLLLLY-------LSCLW---EYFFI---KAQNSQFDFEFQSFP-------MQRLP 103 (306)
T ss_dssp TTTTTSCSSSSSEEEECCSCHHHHHHHHHH-------HHHHH---HHHHH---HHHHC--------CC-------CCCEE
T ss_pred HHHHHcccccCCEEEEecCCHHHHHHHHHH-------HHHHh---hhccc---ccccccccccccccC-------CCCee
Confidence 34444443 57999999999999988888 34432 10000 00000000 000 00156
Q ss_pred EEecCCCCCcHHhHHHHHHHHHHhCCceEEeehH
Q 011602 415 TVFMGSENSSQETRMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 415 ~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~i~ 448 (481)
+++.-+....++|.+.++++++.+|++++++..+
T Consensus 104 vv~iDtg~~fpet~~fv~~~~~~ygl~l~v~~~~ 137 (306)
T 2wsi_A 104 TVFIDQEETFPTLENFVLETSERYCLSLYESQRQ 137 (306)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHTTEEEEECCC-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 7888877778999999999999999999888654
No 52
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.0014 Score=63.03 Aligned_cols=73 Identities=8% Similarity=-0.080 Sum_probs=53.8
Q ss_pred HHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEec
Q 011602 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (481)
Q Consensus 339 l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (481)
|+..+.+. .+++|++|||.||++++.|+ .+...+ ... +..+++
T Consensus 34 l~~a~~~~--~~v~va~SGGkDS~vLL~ll-------~~~~~~-~~~---------------------------i~vv~i 76 (261)
T 2oq2_A 34 IAWSIVTF--PHLFQTTAFGLTGLVTIDML-------SKLSEK-YYM---------------------------PELLFI 76 (261)
T ss_dssp HHHHHHHC--SSEEEECCCCHHHHHHHHHH-------HHHTTT-SCC---------------------------CEEEEE
T ss_pred HHHHHHHC--CCEEEEecCCHHHHHHHHHH-------HHhCcc-CCC---------------------------eeEEEe
Confidence 44445554 48999999999999988887 344210 001 467777
Q ss_pred CCCCCcHHhHHHHHHHHHHhCC----ceEEeehH
Q 011602 419 GSENSSQETRMLAKKLADEIGS----WHLDVSID 448 (481)
Q Consensus 419 ~~~~~~~~~~~~a~~la~~lg~----~~~~i~i~ 448 (481)
-+....++|.+.++++++.+|+ +++++..+
T Consensus 77 Dtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~ 110 (261)
T 2oq2_A 77 DTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPD 110 (261)
T ss_dssp CCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECST
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecC
Confidence 7766678999999999999999 98888754
No 53
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=96.38 E-value=0.0099 Score=57.48 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=52.3
Q ss_pred HHHHHHHcCCCcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccCCCCCCCCChHhhhcceEEEEec
Q 011602 339 LWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHYANGEFPTDSREFAKRIFYTVFM 418 (481)
Q Consensus 339 l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (481)
|+..+++.| ++++|++| |.||++++.|+ .+. + . . +..+++
T Consensus 46 l~~a~~~~g-~~i~Va~S-GkDS~vLL~Ll-------~~~-~--~-~---------------------------i~vv~i 85 (275)
T 2goy_A 46 LKAAFEHFG-DELWISFS-GAEDVVLVDMA-------WKL-N--R-N---------------------------VKVFSL 85 (275)
T ss_dssp HHHHHHHHS-TTEEEECC-SSTTHHHHHHH-------HHH-C--T-T---------------------------CCEEEE
T ss_pred HHHHHHHcC-CCEEEEee-cHHHHHHHHHH-------HHh-C--C-C---------------------------ceEEEE
Confidence 334444444 78999999 99999988777 232 2 1 1 356777
Q ss_pred CCCCCcHHhHHHHHHHHHHhCCceEEeehH
Q 011602 419 GSENSSQETRMLAKKLADEIGSWHLDVSID 448 (481)
Q Consensus 419 ~~~~~~~~~~~~a~~la~~lg~~~~~i~i~ 448 (481)
-+....++|.+.++++++.+|++++++..+
T Consensus 86 Dtg~~~~et~~~v~~~~~~~gi~l~v~~~~ 115 (275)
T 2goy_A 86 DTGRLHPETYRFIDQVREHYGIAIDVLSPD 115 (275)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTCCCEEECCC
T ss_pred eCCCCCHHHHHHHHHHHHHHCCeEEEEeCC
Confidence 766667889999999999999999888655
No 54
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=94.73 E-value=0.062 Score=52.46 Aligned_cols=92 Identities=10% Similarity=0.112 Sum_probs=54.3
Q ss_pred hHHHHHHHcCC--CcEEEeccCChhHHHHHHHHHHhhHHHHHHHhcCchhHHHHHHHhccC-CCCCCCCChHhhhcceEE
Q 011602 338 WLWDYLRRSGA--SGFLLPLSGGADSSSVAAIVGCMCQLVVKEISNGDEQVKADAIRIGHY-ANGEFPTDSREFAKRIFY 414 (481)
Q Consensus 338 ~l~~~l~~~~~--~~~~l~lSGG~DSa~~a~l~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 414 (481)
-|+.-+.+.+- ..+++++|||.||+|++-|+ .+++. ..+.........+ .....| ... +-
T Consensus 46 iLrea~~~f~~~~~~ialSfSGGKDStVLLhL~-------~kal~---~~~~~~~~~~~~~~~~~~~p--~~~-----ip 108 (308)
T 3fwk_A 46 LINETFPKWSPLNGEISFSYNGGKDCQVLLLLY-------LSCLW---EYYIVKLSQSQFDGKFHRFP--LTK-----LP 108 (308)
T ss_dssp HHHHTTTTSCSSSSSEEEECCSSHHHHHHHHHH-------HHHHH---HHHTCCE------------------------E
T ss_pred HHHHHHHHcccccCCEEEEecCChhHHHHHHHH-------HHHhh---hhcccccccccccccccccC--CCC-----cc
Confidence 34444555543 57999999999999988888 44431 0000000000000 000000 001 46
Q ss_pred EEecCCCCCcHHhHHHHHHHHHHhCCceEEee
Q 011602 415 TVFMGSENSSQETRMLAKKLADEIGSWHLDVS 446 (481)
Q Consensus 415 ~~~~~~~~~~~~~~~~a~~la~~lg~~~~~i~ 446 (481)
.++.-+...-++|.+...++++.+|.+.+++.
T Consensus 109 vifiDTG~~FpET~ef~d~~~~~ygL~L~v~~ 140 (308)
T 3fwk_A 109 TVFIDHDDTFKTLENFIEETSLRYSLSLYESD 140 (308)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHTTEEEEECC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCcEEEeC
Confidence 78888888889999999999999999887763
No 55
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=71.36 E-value=18 Score=33.54 Aligned_cols=62 Identities=11% Similarity=-0.097 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 17 DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 17 d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
..+..++.+.+.++.|++-|++.|++. +|. +.+ ...++..+...+.|.++++.++++|+.+.
T Consensus 87 ~r~~~~~~~~~~i~~A~~lGa~~v~~~----~g~-~~~-~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 148 (269)
T 3ngf_A 87 REQEFRDNVDIALHYALALDCRTLHAM----SGI-TEG-LDRKACEETFIENFRYAADKLAPHGITVL 148 (269)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEECC----BCB-CTT-SCHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEc----cCC-CCC-CCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 356778889999999999999988873 342 111 11223344556677888877777887654
No 56
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=70.26 E-value=22 Score=32.48 Aligned_cols=62 Identities=6% Similarity=-0.243 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
.+..++.+.+.++.|++-|++.|++. +|+..... ..++..+...+.+.++++.++++|+.+.
T Consensus 80 ~~~~~~~~~~~i~~a~~lG~~~v~~~----~g~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 141 (260)
T 1k77_A 80 EHEAHADIDLALEYALALNCEQVHVM----AGVVPAGE-DAERYRAVFIDNIRYAADRFAPHGKRIL 141 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECC----CCBCCTTS-CHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEC----cCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 46778889999999999999999873 35433221 1223344556677777777777787654
No 57
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=67.52 E-value=16 Score=34.89 Aligned_cols=74 Identities=15% Similarity=0.056 Sum_probs=47.9
Q ss_pred eEEEEEeccCC-----CCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccC
Q 011602 4 LKVATCNLNNW-----ALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWT 78 (481)
Q Consensus 4 ~rIAl~Q~~~~-----~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~ 78 (481)
++|..+..... ..+.+...+.+.+.++.|++-|++.|++| |++.. ..++-.+...+.|.++++.+++
T Consensus 90 L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~-----~~~~~---~~~~~~~~~~~~l~~l~~~a~~ 161 (305)
T 3obe_A 90 LRISSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGVSCMVQP-----SLPRI---ENEDDAKVVSEIFNRAGEITKK 161 (305)
T ss_dssp CEEEEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEEEC-----CCCCC---SSHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEeeccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEeC-----CCCCC---CCHHHHHHHHHHHHHHHHHHHH
Confidence 56666654331 22346677888899999999999999987 22221 1122234455677888887778
Q ss_pred CCeEEEE
Q 011602 79 DGILCSF 85 (481)
Q Consensus 79 ~~i~iiv 85 (481)
+|+.+.+
T Consensus 162 ~Gv~l~l 168 (305)
T 3obe_A 162 AGILWGY 168 (305)
T ss_dssp TTCEEEE
T ss_pred cCCEEEE
Confidence 8987653
No 58
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=67.30 E-value=14 Score=34.71 Aligned_cols=62 Identities=16% Similarity=0.048 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEEE
Q 011602 17 DFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCSF 85 (481)
Q Consensus 17 d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~iiv 85 (481)
..+..++.+.+.++.|++-|++.|++. +|+.+.+ ..+..+...+.+.++++.++++|+.+.+
T Consensus 96 ~r~~~~~~~~~~i~~a~~lG~~~v~~~----~G~~~~~---~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 157 (290)
T 3tva_A 96 TRASRVAEMKEISDFASWVGCPAIGLH----IGFVPES---SSPDYSELVRVTQDLLTHAANHGQAVHL 157 (290)
T ss_dssp THHHHHHHHHHHHHHHHHHTCSEEEEC----CCCCCCT---TSHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEc----CCCCccc---chHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 356778889999999999999988863 4655443 2233445566778888877778876643
No 59
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=67.14 E-value=15 Score=34.27 Aligned_cols=76 Identities=8% Similarity=-0.058 Sum_probs=47.6
Q ss_pred eEEEEEeccC---CCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCC
Q 011602 4 LKVATCNLNN---WALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDG 80 (481)
Q Consensus 4 ~rIAl~Q~~~---~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~ 80 (481)
+++..+.... ..++.+..++.+.+.++.|++-|++.|++ .+|+...+.. .++..+...+.+.++++.++++|
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~----~~g~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~G 136 (286)
T 3dx5_A 62 LEITMISDYLDISLSADFEKTIEKCEQLAILANWFKTNKIRT----FAGQKGSADF-SQQERQEYVNRIRMICELFAQHN 136 (286)
T ss_dssp CCEEEEECCCCCSTTSCHHHHHHHHHHHHHHHHHHTCCEEEE----CSCSSCGGGS-CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecCCCCCCchhHHHHHHHHHHHHHHHHHhCCCEEEE----cCCCCCcccC-cHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555554322 34567788889999999999999998864 2344332211 12223445566777777776788
Q ss_pred eEEE
Q 011602 81 ILCS 84 (481)
Q Consensus 81 i~ii 84 (481)
+.+.
T Consensus 137 v~l~ 140 (286)
T 3dx5_A 137 MYVL 140 (286)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7654
No 60
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=58.07 E-value=11 Score=34.98 Aligned_cols=62 Identities=13% Similarity=0.004 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
+..++.+.+.++.|++-|++.|+++ +|+.+.......+..+...+.+.++++.++++|+.+.
T Consensus 79 ~~~~~~~~~~i~~a~~lG~~~v~~~----~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 140 (275)
T 3qc0_A 79 EKAIDDNRRAVDEAAELGADCLVLV----AGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVPLA 140 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCEEEE----CBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEe----eCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4567888899999999999988865 3433221111223334455667777777666776554
No 61
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=57.90 E-value=20 Score=33.03 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
+..++.+.+.++.|++-|++.|++ .+|+...+. ..++..+...+.+.++++.++++|+.+.
T Consensus 80 ~~~~~~~~~~i~~a~~lG~~~v~~----~~g~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 140 (278)
T 1i60_A 80 NEIITEFKGMMETCKTLGVKYVVA----VPLVTEQKI-VKEEIKKSSVDVLTELSDIAEPYGVKIA 140 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEE----ECCBCSSCC-CHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEE----ecCCCCCCC-CHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 456788889999999999998887 234432211 1123344556677777777777787654
No 62
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=57.12 E-value=16 Score=34.36 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCC-CccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGC-EDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~-~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
+..++.+.+.++.|++-|++.|+++ |+.. .+. ..++..+...+.+.++++.++++|+.+.
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~-----~~~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 164 (295)
T 3cqj_A 104 AQGLEIMRKAIQFAQDVGIRVIQLA-----GYDVYYQE-ANNETRRRFRDGLKESVEMASRAQVTLA 164 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEC-----CCSCSSSC-CCHHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC-----CCCCCcCc-CHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 4567788899999999999999986 2221 111 1223334455667777776666777654
No 63
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=53.47 E-value=26 Score=32.70 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCc-cc-cchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED-HF-LELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d-~~-~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
+..++.+.+.++.|+.-|++.|+++ +|+...+ .. ..++..+...+.|.++++.++++|+.+.
T Consensus 100 ~~~~~~~~~~i~~a~~lGa~~v~~~----~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 163 (287)
T 3kws_A 100 KECMDTMKEIIAAAGELGSTGVIIV----PAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTSVI 163 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEC----SCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEe----cCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4567888899999999999988774 3433211 00 1233445556677777777767887654
No 64
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=48.19 E-value=53 Score=31.05 Aligned_cols=57 Identities=11% Similarity=-0.004 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeE
Q 011602 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGIL 82 (481)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ 82 (481)
.+...+.+.+.++.|++-|++.|+.|- ++.. ..++-.+...+.|.++++.++++|+.
T Consensus 103 ~~~~~~~~~~~i~~A~~lG~~~v~~~~-----~~~~---~~~~~~~~~~~~l~~l~~~a~~~Gv~ 159 (303)
T 3l23_A 103 TPKIMEYWKATAADHAKLGCKYLIQPM-----MPTI---TTHDEAKLVCDIFNQASDVIKAEGIA 159 (303)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEECS-----CCCC---CSHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECC-----CCCC---CCHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 366678888999999999999999872 1211 11222344566778888877778876
No 65
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=47.03 E-value=48 Score=31.22 Aligned_cols=66 Identities=6% Similarity=-0.109 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
+..++.+.+.++.|++-|++.|+.|=....|..........+..+...+.+.++++.++++|+.+.
T Consensus 103 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 168 (309)
T 2hk0_A 103 AAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGINLC 168 (309)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 566788899999999999998885421111332111101223344556677777777767787654
No 66
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=46.23 E-value=25 Score=32.16 Aligned_cols=62 Identities=19% Similarity=0.076 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccc-cchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHF-LELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~-~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
+..++.+.+.++.|+.-|++.|++. +|+...+.. ..++..+...+.+.++++.++++|+.+.
T Consensus 72 ~~~~~~~~~~i~~A~~lGa~~v~~~----~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 134 (254)
T 3ayv_A 72 GLTLRRLLFGLDRAAELGADRAVFH----SGIPHGRTPEEALERALPLAEALGLVVRRARTLGVRLL 134 (254)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEE----CCCCTTCCHHHHHHTHHHHHHHTHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEC----CCCCcccccccHHHHHHHHHHHHHHHHHHHhhcCCEEE
Confidence 4567888899999999999988764 344332210 1122334455667777776666777654
No 67
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=45.03 E-value=70 Score=31.86 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=30.5
Q ss_pred eEEEEEeccCC-------CCCHHHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 011602 4 LKVATCNLNNW-------ALDFDCNLKNIKESIGRAKEAGAVIRLGPEL 45 (481)
Q Consensus 4 ~rIAl~Q~~~~-------~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl 45 (481)
++|..++..+. ..+.+..++.+++.|+.|++.|+.+|++..+
T Consensus 78 L~i~~i~s~~~~~~i~~~~~~r~~~ie~~k~~i~~aa~lGi~~v~~nf~ 126 (386)
T 3bdk_A 78 LEITVIESIPVHEDIKQGKPNRDALIENYKTSIRNVGAAGIPVVCYNFM 126 (386)
T ss_dssp CEEEEEECCCCCHHHHTTCTTHHHHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CEEEEEeccccccccccCcHHHHHHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 56766643221 3456778889999999999999999997443
No 68
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=43.96 E-value=39 Score=31.77 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=38.6
Q ss_pred HHCCCcEEEccCCC--cccCCc--------hHHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-eCCcEEEe
Q 011602 188 ALNGVEVFMNASGS--HHQLRK--------LDYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMIAQ 256 (481)
Q Consensus 188 a~~Gadlil~psa~--~~~~gk--------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~ila~ 256 (481)
+.+|||||+.|=.+ .|.... .......++..|.+++++++.-...-.. ++..| -.++++ |+|+++..
T Consensus 50 ~~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~iv~G~~~~~~-~~~~y-Ns~~~i~~~G~i~~~ 127 (281)
T 3p8k_A 50 MNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIR-NNQIF-NTAFSVNKSGQLINE 127 (281)
T ss_dssp CCTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEEEEEEEEEEE-TTEEE-EEEEEECTTSCEEEE
T ss_pred HhCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEEEEeeeEEcc-CCcEE-EEEEEEcCCCeEEEE
Confidence 34799999998543 222211 1234556778888999887643211011 22333 344555 89998864
Q ss_pred e
Q 011602 257 G 257 (481)
Q Consensus 257 ~ 257 (481)
-
T Consensus 128 y 128 (281)
T 3p8k_A 128 Y 128 (281)
T ss_dssp E
T ss_pred E
Confidence 3
No 69
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=41.76 E-value=68 Score=29.21 Aligned_cols=70 Identities=17% Similarity=-0.051 Sum_probs=41.8
Q ss_pred eEEEEEecc--CCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHH-HHHHHHHHhcccCCC
Q 011602 4 LKVATCNLN--NWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHA-WECLKDLLLGDWTDG 80 (481)
Q Consensus 4 ~rIAl~Q~~--~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~-~~~l~~la~~~~~~~ 80 (481)
++|..+... ....+ +...+.+.+.++.|++-|++.|++ .+|+... +..+.. .+.+.++++.++++|
T Consensus 65 l~~~~~~~~~~~~~~~-~~~~~~~~~~i~~a~~lG~~~v~~----~~g~~~~------~~~~~~~~~~l~~l~~~a~~~g 133 (272)
T 2q02_A 65 LEIVTINAVYPFNQLT-EEVVKKTEGLLRDAQGVGARALVL----CPLNDGT------IVPPEVTVEAIKRLSDLFARYD 133 (272)
T ss_dssp CEEEEEEEETTTTSCC-HHHHHHHHHHHHHHHHHTCSEEEE----CCCCSSB------CCCHHHHHHHHHHHHHHHHTTT
T ss_pred CeEEechhhhccCCcH-HHHHHHHHHHHHHHHHhCCCEEEE----ccCCCch------hHHHHHHHHHHHHHHHHHHHcC
Confidence 566555432 11123 445677888999999999998875 2343211 122344 566777777766788
Q ss_pred eEEE
Q 011602 81 ILCS 84 (481)
Q Consensus 81 i~ii 84 (481)
+.+.
T Consensus 134 v~l~ 137 (272)
T 2q02_A 134 IQGL 137 (272)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7654
No 70
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=41.51 E-value=34 Score=31.44 Aligned_cols=61 Identities=10% Similarity=0.017 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
.+..++.+.+.++.|++-|++.|+++ ..++ .+. ...+..+...+.|.++++.++++|+.+.
T Consensus 79 ~~~~~~~~~~~i~~A~~lG~~~v~~~--~~p~---~~~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 139 (281)
T 3u0h_A 79 FLRELSLLPDRARLCARLGARSVTAF--LWPS---MDE-EPVRYISQLARRIRQVAVELLPLGMRVG 139 (281)
T ss_dssp HHHHHHTHHHHHHHHHHTTCCEEEEE--CCSE---ESS-CHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEe--ecCC---CCC-cchhhHHHHHHHHHHHHHHHHHcCCEEE
Confidence 34556678889999999999999853 1111 111 1122334456677888877777887654
No 71
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=37.15 E-value=66 Score=29.78 Aligned_cols=64 Identities=6% Similarity=-0.051 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCC--CCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYG--CEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~--~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
+..++.+.+.++.|++-|++.|+.+ .-+|++ .......++..+...+.+.++++.++++|+.+.
T Consensus 84 ~~~~~~~~~~i~~a~~lG~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 149 (294)
T 3vni_A 84 KNAKAFYTDLLKRLYKLDVHLIGGA--LYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFC 149 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEES--TTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeeecc--ccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4567788889999999999998742 123332 111112233445556677778777767887654
No 72
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=35.40 E-value=72 Score=29.57 Aligned_cols=66 Identities=9% Similarity=-0.059 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCC--CcCCCCCCcc----cc-chhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPEL--EITGYGCEDH----FL-ELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl--~ltGy~~~d~----~~-~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
+..++.+.+.++.|++-|++.|+++.. +..|...... .. .++..+...+.+.++++.++++|+.+.
T Consensus 86 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 158 (301)
T 3cny_A 86 EKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLKVA 158 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 456778888999999999998887642 1113321100 00 222334455677777777777887654
No 73
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=35.20 E-value=88 Score=29.29 Aligned_cols=70 Identities=11% Similarity=0.057 Sum_probs=39.2
Q ss_pred HHHHCCCcEEEccCCCcccCCch-----------HHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-eCCcE
Q 011602 186 DLALNGVEVFMNASGSHHQLRKL-----------DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDM 253 (481)
Q Consensus 186 ~la~~Gadlil~psa~~~~~gk~-----------~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~i 253 (481)
..+.+|||||+.|=.+-..+... ....+.++..|.+++++++.--.. ..+++..| -.++++ |+|++
T Consensus 48 ~A~~~gadlvvfPE~~l~gy~~~d~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~~~~~~y-Ns~~~i~~~G~i 125 (283)
T 3hkx_A 48 RASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALVWSLPG-PEGPEQRG-ITAELADEHGEV 125 (283)
T ss_dssp HHHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHHHHHHHHHTTSEEEECCBC-SSCTTTCC-BEEEEECTTSCE
T ss_pred HHHHCCCCEEEcCCCcccCCChHHHHHHhccccCCHHHHHHHHHHHHhCCEEEEEEEE-EcCCCCEE-EEEEEEcCCCcE
Confidence 34568999999985432211111 123456677888999887643221 11112233 245555 89998
Q ss_pred EEee
Q 011602 254 IAQG 257 (481)
Q Consensus 254 la~~ 257 (481)
+..-
T Consensus 126 ~~~y 129 (283)
T 3hkx_A 126 LASY 129 (283)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8654
No 74
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=33.97 E-value=1.3e+02 Score=29.26 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=28.6
Q ss_pred eEEEEEeccCC-------CCCHHHHHHHHHHHHHHHHHCCCeEEEc
Q 011602 4 LKVATCNLNNW-------ALDFDCNLKNIKESIGRAKEAGAVIRLG 42 (481)
Q Consensus 4 ~rIAl~Q~~~~-------~~d~~~N~~~i~~~i~~A~~~gadLvvf 42 (481)
++|..+...+. ..+.+..++.+.+.++.|++.|+++|++
T Consensus 69 L~i~~~~~~~~~~~~~~~~~~r~~~i~~~~~~i~~a~~lG~~~v~~ 114 (367)
T 1tz9_A 69 LALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCY 114 (367)
T ss_dssp CEEEEECSCCCCHHHHHTCSTHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEecCCCcHHHhcCCcCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 56665553322 2346778888899999999999999998
No 75
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=32.85 E-value=1.3e+02 Score=27.63 Aligned_cols=56 Identities=18% Similarity=0.050 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccC
Q 011602 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWT 78 (481)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~ 78 (481)
.+..++.+++.++.|++-|++.|+.| ..|+... ...++..+...+.+.++++.+++
T Consensus 108 r~~~~~~~~~~i~~A~~lG~~~v~~~---~~g~~~~--~~~~~~~~~~~~~l~~l~~~a~~ 163 (290)
T 2zvr_A 108 RKKAIERVVKHTEVAGMFGALVIIGL---VRGRREG--RSYEETEELFIESMKRLLELTEH 163 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEESG---GGCCCTT--SCHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEec---CCCCCCC--cCHHHHHHHHHHHHHHHHHHhcc
Confidence 35667888999999999999999833 2455221 11233345566778888887654
No 76
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=31.20 E-value=38 Score=29.87 Aligned_cols=70 Identities=13% Similarity=-0.037 Sum_probs=33.7
Q ss_pred CCc--eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccC
Q 011602 1 MRL--LKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWT 78 (481)
Q Consensus 1 M~~--~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~ 78 (481)
|+. |||+.+. -.-++. ..+.++++.+.+.++|+|++- +|+.....-.+...+.++.|.+. .
T Consensus 1 ~~~~~mri~~iS--D~H~~~----~~~~~~~~~~~~~~~D~vi~~---------GDl~~~~~~~~~~~~~~~~l~~~--~ 63 (228)
T 1uf3_A 1 MRRTVRYILATS--NPMGDL----EALEKFVKLAPDTGADAIALI---------GNLMPKAAKSRDYAAFFRILSEA--H 63 (228)
T ss_dssp CCCCCCEEEEEE--CCTTCH----HHHHHHHTHHHHHTCSEEEEE---------SCSSCTTCCHHHHHHHHHHHGGG--C
T ss_pred CccceEEEEEEe--eccCCH----HHHHHHHHHHhhcCCCEEEEC---------CCCCCCCCCHHHHHHHHHHHHhc--C
Confidence 654 5655433 233443 334444555555588988742 23322111112233455666543 2
Q ss_pred CCeEEEEcc
Q 011602 79 DGILCSFGM 87 (481)
Q Consensus 79 ~~i~iivG~ 87 (481)
..++++.|.
T Consensus 64 ~pv~~v~GN 72 (228)
T 1uf3_A 64 LPTAYVPGP 72 (228)
T ss_dssp SCEEEECCT
T ss_pred CcEEEECCC
Confidence 357777785
No 77
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=30.25 E-value=67 Score=30.44 Aligned_cols=62 Identities=15% Similarity=0.018 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCcc---------ccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDH---------FLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~---------~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
+..++.+.+.++.|++-|++.|+++ +|....+. ....+..+...+.+.++++.++++|+.+.
T Consensus 107 ~~~~~~~~~~i~~A~~lGa~~v~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 177 (340)
T 2zds_A 107 QRAAAEIKDTARAAARLGVDTVIGF----TGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVRFA 177 (340)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEC----CCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEe----cCCcCcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4567788889999999999988864 33321110 00112233445567777776666776554
No 78
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=28.51 E-value=80 Score=31.16 Aligned_cols=62 Identities=15% Similarity=-0.025 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCc---cccchhhhhHHHHHHHHHHhcccCCC--eEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCED---HFLELDTVTHAWECLKDLLLGDWTDG--ILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d---~~~~~~~~~~~~~~l~~la~~~~~~~--i~ii 84 (481)
+..++.+++.++.|++-|++.|++. +|+...+ .....+..+...+.|.++++.++++| +.+.
T Consensus 112 ~~~i~~~~~~i~~A~~LGa~~vvv~----~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~l~ 178 (394)
T 1xla_A 112 RFALAKVLHNIDLAAEMGAETFVMW----GGREGSEYDGSKDLAAALDRMREGVDTAAGYIKDKGYNLRIA 178 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEC----CTTCEESSGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEC----CCCCccccccccCHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 5567889999999999999988762 3432100 01112234445566777777666667 6554
No 79
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=28.44 E-value=1.4e+02 Score=29.66 Aligned_cols=71 Identities=10% Similarity=0.113 Sum_probs=39.4
Q ss_pred HHHHCCCcEEEccCCC--cccCCc--------------hHHHHHHHHHHHHHcCcEEEEEcCc-cCCCCceeeeccEEEE
Q 011602 186 DLALNGVEVFMNASGS--HHQLRK--------------LDYRIRAFISATHSRGGVYMYSNHQ-GCDGGRLYFDGCSCVV 248 (481)
Q Consensus 186 ~la~~Gadlil~psa~--~~~~gk--------------~~~~~~l~~~rA~e~~~~vv~aN~~-G~~~~~~~f~G~S~I~ 248 (481)
..+.+|||||+.|=.+ ++.... .......++..|.+++++++..-.. ....++..| -.++++
T Consensus 107 ~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~~~~~~~~~l~~lA~~~~i~Iv~G~~e~~~~~~~~~y-Nsa~vi 185 (405)
T 2vhh_A 107 AAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIW-NTAVVI 185 (405)
T ss_dssp HHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSHHHHHHHHHHHHTTCEEEEEEEEEETTTTTEEE-EEEEEE
T ss_pred HHHHCCCCEEEcCCcccccccccccchhhHHHHHhhccCCHHHHHHHHHHHHCCEEEEEeceecccCCCCcEE-EEEEEE
Confidence 3456899999998543 332110 1123456777888999988742111 110022333 334555
Q ss_pred -eCCcEEEee
Q 011602 249 -VNGDMIAQG 257 (481)
Q Consensus 249 -p~G~ila~~ 257 (481)
|+|+++..-
T Consensus 186 ~p~G~i~~~Y 195 (405)
T 2vhh_A 186 SNSGRYLGKH 195 (405)
T ss_dssp CTTSCEEEEE
T ss_pred CCCCeEEEEE
Confidence 899988653
No 80
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=25.17 E-value=1.5e+02 Score=27.16 Aligned_cols=68 Identities=12% Similarity=0.180 Sum_probs=38.1
Q ss_pred HHHHCCCcEEEccCCC--cccCCch------------HHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-eC
Q 011602 186 DLALNGVEVFMNASGS--HHQLRKL------------DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VN 250 (481)
Q Consensus 186 ~la~~Gadlil~psa~--~~~~gk~------------~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~ 250 (481)
..+.+|||+|+.|=.+ .|..... ......++..|.+++++++.-- .-.. ++..|. .++++ |+
T Consensus 29 ~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~~~iv~G~-~~~~-~~~~yN-s~~~i~~~ 105 (262)
T 3ivz_A 29 EASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGVYIVAGT-AEKD-GDVLYN-SAVVVGPR 105 (262)
T ss_dssp HHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHCCEEEEEE-EEEE-TTEEEE-EEEEEETT
T ss_pred HHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCcEEEEeE-EEee-CCcEEE-EEEEEcCC
Confidence 3457899999998433 2222211 1234567778888998876431 1111 223343 34555 89
Q ss_pred CcEEEee
Q 011602 251 GDMIAQG 257 (481)
Q Consensus 251 G~ila~~ 257 (481)
| ++..-
T Consensus 106 G-~~~~y 111 (262)
T 3ivz_A 106 G-FIGKY 111 (262)
T ss_dssp E-EEEEE
T ss_pred e-eEEEE
Confidence 9 77553
No 81
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=24.85 E-value=98 Score=27.41 Aligned_cols=37 Identities=11% Similarity=-0.023 Sum_probs=23.9
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Q 011602 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIR 40 (481)
Q Consensus 1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLv 40 (481)
|..|||.++.-.++.+ .|..++.+.+.+....|+++-
T Consensus 4 M~~mkIl~I~GS~r~~---s~t~~la~~~~~~~~~g~~v~ 40 (199)
T 4hs4_A 4 TSPLHFVTLLGSLRKA---SFNAAVARALPEIAPEGIAIT 40 (199)
T ss_dssp -CCEEEEEEECCCSTT---CHHHHHHHHHHHHCCTTEEEE
T ss_pred CCCCEEEEEEcCCCCC---ChHHHHHHHHHHHccCCCEEE
Confidence 5568999999877654 455566666655555566655
No 82
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=24.51 E-value=1.3e+02 Score=27.36 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhccc-CCCeEEE
Q 011602 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDW-TDGILCS 84 (481)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~-~~~i~ii 84 (481)
.+..++.+.+.++.|++-|+..+++. +|+. +. +...+.+.++++.++ ++++.+.
T Consensus 83 r~~~~~~~~~~i~~a~~lGa~~vv~h----~g~~-~~--------~~~~~~l~~l~~~a~~~~gv~l~ 137 (270)
T 3aam_A 83 WEKSVASLADDLEKAALLGVEYVVVH----PGSG-RP--------ERVKEGALKALRLAGVRSRPVLL 137 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEC----CCBS-CH--------HHHHHHHHHHHHHHTCCSSSEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEC----CCCC-CH--------HHHHHHHHHHHHhhcccCCCEEE
Confidence 45577788888888888898877753 3443 11 344556666776665 5676554
No 83
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=24.03 E-value=1.3e+02 Score=27.84 Aligned_cols=70 Identities=7% Similarity=0.053 Sum_probs=38.7
Q ss_pred HHHHCCCcEEEccCCC--cccCCch--------HHHHHHHHHHHHHcCcEEEEEcCccCCCCceeeeccEEEE-eCCcEE
Q 011602 186 DLALNGVEVFMNASGS--HHQLRKL--------DYRIRAFISATHSRGGVYMYSNHQGCDGGRLYFDGCSCVV-VNGDMI 254 (481)
Q Consensus 186 ~la~~Gadlil~psa~--~~~~gk~--------~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~~~f~G~S~I~-p~G~il 254 (481)
..+.+|||||+.|=.+ ++..... ......++..|.+++++++.-...-.. ++..| -.++++ |+|+++
T Consensus 30 ~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~~-~~~~y-Ns~~~i~~~G~i~ 107 (276)
T 2w1v_A 30 EAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYLIGGSIPEED-AGKLY-NTCSVFGPDGSLL 107 (276)
T ss_dssp HHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHTSEEECCCEEEEE-TTEEE-EEEEEECTTSCEE
T ss_pred HHHHCCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHHcCeEEEecceeecC-CCcEE-EEEEEECCCCcEE
Confidence 3456899999998543 3322111 123456777888888887632110001 12233 334555 899987
Q ss_pred Eee
Q 011602 255 AQG 257 (481)
Q Consensus 255 a~~ 257 (481)
..-
T Consensus 108 ~~y 110 (276)
T 2w1v_A 108 VKH 110 (276)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
No 84
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=23.35 E-value=45 Score=31.62 Aligned_cols=63 Identities=10% Similarity=-0.024 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcC-CCCCCccccchhhhhHHHHHHHHHHhcccCCCeE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEIT-GYGCEDHFLELDTVTHAWECLKDLLLGDWTDGIL 82 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~lt-Gy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ 82 (481)
+..++.+++.++.|++-|+..|+.|=...+ |... +....++..+...+.+.++++.++++|+.
T Consensus 110 ~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~ 173 (316)
T 3qxb_A 110 SLGYQHLKRAIDMTAAMEVPATGMPFGSYSAADAL-NPARREEIYAIARDMWIELAAYAKRQGLS 173 (316)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECCBBCCHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecCCCcCccccC-CcccHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 456778889999999999999987532210 0000 00011222344556677777776667765
No 85
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=23.15 E-value=49 Score=30.92 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=24.1
Q ss_pred CCceEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCeEEEc
Q 011602 1 MRLLKVATCNLNNWALDFDCNLKNIKESIGRAKEAGAVIRLG 42 (481)
Q Consensus 1 M~~~rIAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvf 42 (481)
|+.+||+++. |+.+|+..+.++++.+.+.++|+|++
T Consensus 9 ~~~~~i~~iS------DiHg~~~~l~~vl~~~~~~~~D~ii~ 44 (270)
T 3qfm_A 9 MDMTKIALLS------DIHGNTTALEAVLADARQLGVDEYWL 44 (270)
T ss_dssp --CEEEEEEC------CCTTCHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccEEEEEe------cCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 5567777663 55556677777777777778997775
No 86
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=23.09 E-value=56 Score=29.02 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=24.9
Q ss_pred eEEEEEeccCCCC---CHHHHHHHHHHHHHHHHHCCCeEEEcCCCC
Q 011602 4 LKVATCNLNNWAL---DFDCNLKNIKESIGRAKEAGAVIRLGPELE 46 (481)
Q Consensus 4 ~rIAl~Q~~~~~~---d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ 46 (481)
+++-++..|+.-. +.....+.+.+.|+ +.++|||+|-|..
T Consensus 12 ~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~---~~~pDIi~LQEv~ 54 (256)
T 4fva_A 12 FEVSVMSWNIDGLDGRSLLTRMKAVAHIVK---NVNPDILFLQEVV 54 (256)
T ss_dssp CEEEEEEEECCTTCCTTHHHHHHHHHHHHH---HHCCSEEEEEEEC
T ss_pred CEEEEEEEecCCCCCcCHHHHHHHHHHHHH---HcCCCEEEEEecC
Confidence 5566666776422 34444455555554 4589999999973
No 87
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=22.96 E-value=60 Score=30.77 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=27.5
Q ss_pred CChHHHhccccchHHHHHHHcC--CCc-EEEeccCChhHHH
Q 011602 326 SPEEEIAFGPGCWLWDYLRRSG--ASG-FLLPLSGGADSSS 363 (481)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~--~~~-~~l~lSGG~DSa~ 363 (481)
...+++..+.+..|.+.+++.. .++ ++|||||| |+.
T Consensus 7 ~~~~~la~~aA~~i~~~i~~~~~~~~~~~~lglsgG--sTp 45 (289)
T 1ne7_A 7 EHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTG--STP 45 (289)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCS--HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEcCC--ccH
Confidence 3457788888888989888742 235 89999999 775
No 88
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=22.96 E-value=3.1e+02 Score=23.03 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEE
Q 011602 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILC 83 (481)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~i 83 (481)
.+.-.+.+.++++.+.+.++.+++.--.-...++...............+.+.+++++ +++.+
T Consensus 96 ~~~~~~~~~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~---~~v~~ 158 (204)
T 3p94_A 96 LENVFGNLVSMAELAKANHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADK---NGLTY 158 (204)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHH---TTCEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH---cCCcE
Confidence 3333444444555555578998887432222221111011122233444566677664 56544
No 89
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=22.87 E-value=1.7e+02 Score=28.08 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=36.5
Q ss_pred CCCcEEEccCCCc--ccCCc----------hHHHHHHHHHHHHHcCcEEEEEcCccCCCCc-eeeeccEEEE-eCCcEEE
Q 011602 190 NGVEVFMNASGSH--HQLRK----------LDYRIRAFISATHSRGGVYMYSNHQGCDGGR-LYFDGCSCVV-VNGDMIA 255 (481)
Q Consensus 190 ~Gadlil~psa~~--~~~gk----------~~~~~~l~~~rA~e~~~~vv~aN~~G~~~~~-~~f~G~S~I~-p~G~ila 255 (481)
+|||||+.|=.+. +.... .......++..|.+++++++.--..-..++. ..| -.++++ |+|+++.
T Consensus 51 ~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~G~~e~~~~~~~~~y-Nsa~vi~p~G~i~~ 129 (334)
T 2dyu_A 51 PGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKETELYAKACKEAKVYGVFSIMERNPDSNKNPY-NTAIIIDPQGEIIL 129 (334)
T ss_dssp TTEEEEECCTTTTTCCCTTTTTSGGGCBCSSSHHHHHHHHHHHHHTCEEEEEEEECCSSTTSCCE-EEEEEECTTSCEEE
T ss_pred CCCcEEEcCCCccccCCCChhHHHHhhccCCCHHHHHHHHHHHHhCeEEEEeeEEECCCCCceeE-EEEEEECCCCCEEE
Confidence 6999999984322 11110 1233456777888889887653211001011 133 234555 8999886
Q ss_pred ee
Q 011602 256 QG 257 (481)
Q Consensus 256 ~~ 257 (481)
.-
T Consensus 130 ~Y 131 (334)
T 2dyu_A 130 KY 131 (334)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 90
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=22.40 E-value=53 Score=30.57 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=27.8
Q ss_pred CChHHHhccccchHHHHHHHc---CCCcEEEeccCChhHHH
Q 011602 326 SPEEEIAFGPGCWLWDYLRRS---GASGFLLPLSGGADSSS 363 (481)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~---~~~~~~l~lSGG~DSa~ 363 (481)
...+++..+.+..|.+.+++. .-++++|||||| |+.
T Consensus 7 ~~~~~l~~~aA~~l~~~l~~~~~~~~~~~~i~lsgG--sTp 45 (266)
T 1fs5_A 7 TTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTG--GTP 45 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCCCSSSCEEEEECCS--STT
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhcccCceEEEEcCC--CCH
Confidence 445788888888899988873 235799999999 554
No 91
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=21.85 E-value=2.5e+02 Score=20.90 Aligned_cols=34 Identities=21% Similarity=0.119 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCceEEeehHHHHHHHHHHHHHhhC
Q 011602 429 MLAKKLADEIGSWHLDVSIDTVVSAFLSLFQTLTG 463 (481)
Q Consensus 429 ~~a~~la~~lg~~~~~i~i~~~~~~~~~~~~~~~~ 463 (481)
..|+++-+..|++|.++||+.- ....+.+...+|
T Consensus 22 ~~ak~~L~~~~i~~~~~di~~~-~~~~~~l~~~~g 55 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLVDISQD-NALRDEMRTLAG 55 (93)
T ss_dssp HHHHHHHHHTTCCCEEEETTSC-HHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCceEEEECCCC-HHHHHHHHHHhC
Confidence 6888888999999999999742 244455555666
No 92
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=21.80 E-value=1.8e+02 Score=27.54 Aligned_cols=66 Identities=17% Similarity=0.057 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccc----c-------chhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHF----L-------ELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~----~-------~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
+..++.+.+.++.|++-|++.|+.|=.+..|....... . ..+..+...+.+.++++.++++|+.+.
T Consensus 105 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~ 181 (335)
T 2qw5_A 105 QEALEYLKSRVDITAALGGEIMMGPIVIPYGVFPTTDFNEPIWSDELQEHLKVRYANAQPILDKLGEYAEIKKVKLA 181 (335)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEECCSSCTTCCCBCTTCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEeccccCccccccCCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 45577888999999999999996553221122111100 0 122233345567777776666776554
No 93
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=20.76 E-value=2e+02 Score=28.63 Aligned_cols=72 Identities=4% Similarity=-0.091 Sum_probs=39.9
Q ss_pred HHHHCCCcEEEccCCCcccCCch-----------HHHHHHHHHHHHHcCcEEEEEcCc--cCCCCceeeeccEEEE-eCC
Q 011602 186 DLALNGVEVFMNASGSHHQLRKL-----------DYRIRAFISATHSRGGVYMYSNHQ--GCDGGRLYFDGCSCVV-VNG 251 (481)
Q Consensus 186 ~la~~Gadlil~psa~~~~~gk~-----------~~~~~l~~~rA~e~~~~vv~aN~~--G~~~~~~~f~G~S~I~-p~G 251 (481)
..+.+|||||+.|=.+.+..... ....+.++..|.+++++++.-... -...++..| -.++++ |+|
T Consensus 41 ~A~~~gadlvv~PE~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~e~~~~~~~y-Ns~~~i~~~G 119 (440)
T 1ems_A 41 RAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPW-NTHLIIDSDG 119 (440)
T ss_dssp HHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEE-EEEEEECTTS
T ss_pred HHHHCCCCEEECCCcccccCcchhHHHHhhccCCCHHHHHHHHHHHHcCeEEEeccccccccCCCCcEE-EEEEEECCCC
Confidence 34568999999996553211110 112345677788999988643111 000012233 334555 899
Q ss_pred cEEEeec
Q 011602 252 DMIAQGS 258 (481)
Q Consensus 252 ~ila~~~ 258 (481)
+++..-.
T Consensus 120 ~i~~~yr 126 (440)
T 1ems_A 120 VTRAEYN 126 (440)
T ss_dssp CEEEEEE
T ss_pred cEEEEEe
Confidence 9886543
No 94
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=20.64 E-value=1.4e+02 Score=27.76 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEE
Q 011602 18 FDCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILC 83 (481)
Q Consensus 18 ~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~i 83 (481)
.+..++.+.+.++.|++-|++.|++- +|+.... ..++..+...+.+.++++.+ .++.+
T Consensus 89 r~~~~~~~~~~i~~A~~lGa~~vv~h----~g~~~~~--~~~~~~~~~~~~l~~l~~~a--~gv~l 146 (303)
T 3aal_A 89 FSLGVDFLRAEIERTEAIGAKQLVLH----PGAHVGA--GVEAGLRQIIRGLNEVLTRE--QNVQI 146 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEC----CEECTTS--CHHHHHHHHHHHHHHHCCSS--CSCEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEC----CCcCCCC--CHHHHHHHHHHHHHHHHHhC--CCCEE
Confidence 35667888889999999999988752 2432221 12233444556677776654 45443
No 95
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=20.27 E-value=1.8e+02 Score=27.52 Aligned_cols=59 Identities=17% Similarity=0.083 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccC
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWT 78 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~ 78 (481)
+..++.+++.++.|++-|++.|++.= ...||............+...+.|.++++.+++
T Consensus 103 ~~~i~~~~~~i~~A~~LGa~~vv~~~-g~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~ 161 (333)
T 3ktc_A 103 AAAFELMHESAGIVRELGANYVKVWP-GQDGWDYPFQVSHKNLWKLAVDGMRDLAGANPD 161 (333)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEECC-TTCEESSTTSSCHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECC-CCCCcCCCCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 45677888889999999998887520 011221100011123344556778888887654
No 96
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=20.04 E-value=75 Score=29.24 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCC--CCCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGY--GCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy--~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
+..++.+.+.++.|++-|++.|+.|=..-.|+ .... ...++..+...+.+.++++.++++|+.+.
T Consensus 84 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 150 (290)
T 2qul_A 84 DAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDM-KDKRPYVDRAIESVRRVIKVAEDYGIIYA 150 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTC-CCCHHHHHHHHHHHHTTHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCCc-ccHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 45678888899999999999988541100143 1111 11222334455666777766666776554
No 97
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=20.03 E-value=2.9e+02 Score=24.96 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCCCCcCCCCCCccccchhhhhHHHHHHHHHHhcccCCCeEEE
Q 011602 19 DCNLKNIKESIGRAKEAGAVIRLGPELEITGYGCEDHFLELDTVTHAWECLKDLLLGDWTDGILCS 84 (481)
Q Consensus 19 ~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~d~~~~~~~~~~~~~~l~~la~~~~~~~i~ii 84 (481)
+..++.+.+.++.|++-|++.|++. +|+...+. ..++..+...+.+.+++.+ ++++.+.
T Consensus 85 ~~~~~~~~~~i~~A~~lGa~~v~~~----~g~~~~~~-~~~~~~~~~~~~l~~l~a~--~~gv~l~ 143 (285)
T 1qtw_A 85 EKSRDAFIDEMQRCEQLGLSLLNFH----PGSHLMQI-SEEDCLARIAESINIALDK--TQGVTAV 143 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEC----CCBCTTTS-CHHHHHHHHHHHHHHHHHH--CSSCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC----cCCCCCCC-CHHHHHHHHHHHHHHHHhc--cCCCEEE
Confidence 4577888899999999999988752 34332221 1223334455566666543 3565543
No 98
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=20.02 E-value=43 Score=30.80 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=27.6
Q ss_pred CChHHHhccccchHHHHHHHcCCCcEEEeccCChhHHHHHHHH
Q 011602 326 SPEEEIAFGPGCWLWDYLRRSGASGFLLPLSGGADSSSVAAIV 368 (481)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lSGG~DSa~~a~l~ 368 (481)
...+++.++.+..|.+.+++ -+.++|+|||| |+. ..+.
T Consensus 8 ~~~~~l~~~aA~~i~~~i~~--~~~~~l~lsgG--stp-~~~~ 45 (238)
T 1y89_A 8 PTADAVVKSLADDMLAYSQQ--GQPVHISLSGG--STP-KMLF 45 (238)
T ss_dssp SSHHHHHHHHHHHHHHHHTT--SSCEEEEECCS--HHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh--CCCEEEEECCC--ccH-HHHH
Confidence 34567888888788888876 35799999999 764 3343
Done!