BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011603
(481 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LIA4|RIK_ARATH Protein RIK OS=Arabidopsis thaliana GN=RIK PE=1 SV=2
Length = 578
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 268/485 (55%), Positives = 336/485 (69%), Gaps = 42/485 (8%)
Query: 1 MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGV-PVAPV 59
MTED+ + +T+ +S+TRQR+KRKWD+PAE L+ + G++ P + P+
Sbjct: 1 MTEDNDEARVPLSDSSTTNDASRTRQRRKRKWDKPAEQLV-----AAGVAFPQLLPLGNT 55
Query: 60 VPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRY 119
+ P+ + P+ +VP V PK NQPK+QDE+IIAREIVIND+E+S+R+
Sbjct: 56 MNVPSMS------PLLQTLSVPLAV------PKVNQPKIQDEVIIAREIVINDAEASLRH 103
Query: 120 KLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHL--KETAERILAV 177
+LTKR TQE+IQ+ TGAVVITRGKYR PNAPPDGEKPLYLHISA A L KET ERILAV
Sbjct: 104 RLTKRSTQEDIQRSTGAVVITRGKYRPPNAPPDGEKPLYLHISAAAQLQLKETTERILAV 163
Query: 178 DHAAAMVEEMLKQ---GHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPND 234
D AAAM+EEM+KQ G LQTV + +ST V+LGF+AD S N+AARIRGPND
Sbjct: 164 DRAAAMIEEMMKQKSISQIGSVGLQTV-----KMLSTCVYLGFEADPSSNVAARIRGPND 218
Query: 235 QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 294
QYINHIMNETGATV+LRGRGSG+ E G+E PLHL LS +NPKS+++AKRLAENL+D
Sbjct: 219 QYINHIMNETGATVVLRGRGSGSLENQHGDEAQLPLHLLLSGSNPKSIDDAKRLAENLMD 278
Query: 295 TISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAP 354
TIS E GASRVSS KVY AVPPPQQL++G G E + N S L +++ +++ P A
Sbjct: 279 TISVEFGASRVSSSKVYGAVPPPQQLISGAPGSDQENQ-NLISTYGLMTSIPITAPPYAV 337
Query: 355 S---VPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPL 411
S V T++Y Q ++QS GI N G QPV+ GGTSYSGY GIYPQATPL
Sbjct: 338 SSFPVTPATSLYPQFPVMQSLGISNG--------GPSQPVA-GGTSYSGYAGIYPQATPL 388
Query: 412 QQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGP 471
QQVA L+QS SP+ S V PT +++T+ + + A +E E+RPP+KRKFQELP K P
Sbjct: 389 QQVAQVLKQSISPVISTVPPTM-LTATSLSIPSDNASNEMERRPPRKRKFQELPADCKVP 447
Query: 472 AKHNQ 476
K Q
Sbjct: 448 EKDKQ 452
>sp|Q32SG5|RIK_MAIZE Protein RIK OS=Zea mays PE=1 SV=1
Length = 616
Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust.
Identities = 253/498 (50%), Positives = 312/498 (62%), Gaps = 36/498 (7%)
Query: 1 MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLI----------NFPLASFGIS 50
MTED H + + +A Q+ +RKKRKWDQPAE L+ P+ +FG +
Sbjct: 1 MTEDRAHKVADEPAA----SGRQSPERKKRKWDQPAEDLVSAAVTAAAVSGMPVMNFG-A 55
Query: 51 LPGVPVAPVVPAPAAAAFFTNPPVASGA--TVPPVVLQGPLPP--KFNQPKVQDELIIAR 106
LPGV V P V A AA + PV + P VLQ K +Q K+ DE +IAR
Sbjct: 56 LPGV-VLPGVTAYGAATLPSVVPVPYSLPPHIAPSVLQNAAAAAQKLSQAKIPDE-VIAR 113
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAH 166
EIVIND++ SVRYKLTKR TQEEIQKCT V+ITRGKY PN PDGEKPLYLHISAG+
Sbjct: 114 EIVINDADPSVRYKLTKRQTQEEIQKCTNTVIITRGKYHPPNLLPDGEKPLYLHISAGSQ 173
Query: 167 LKETAERILAVDHAAAMVEEMLKQGHAGFPT---LQTVMGNGVQAMSTSVFLGFDADASL 223
LK+TAERI AVD AA+M+EE+LKQG + G V+ S SVFLGFDAD SL
Sbjct: 174 LKDTAERIKAVDRAASMIEEILKQGTTSESISVPFSSSTGQAVRPFSASVFLGFDADPSL 233
Query: 224 NIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLE 283
NI ARIRGPNDQYINHIM ETG TV+LRG+ S N E QPLHL+L+S + K+LE
Sbjct: 234 NITARIRGPNDQYINHIMKETGVTVVLRGKDSENLGSCHSEASQQPLHLYLTSMHLKNLE 293
Query: 284 EAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLN--AGSAVIL 341
AK LAENLLDT++AE GASR+SS KVY AVPPPQQLL G+ G + ++ G V+
Sbjct: 294 AAKVLAENLLDTVAAEFGASRISSSKVYGAVPPPQQLLAGVDTSGTKSDVHYIVGPNVLS 353
Query: 342 TSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGY 401
+T + +S + + V + + +QSG S P + + YP P + GG YSGY
Sbjct: 354 GATHSFASTGV------IAPVVAPAVTVQSGAPTYSGVPLPSNMAYPIPPANGGAFYSGY 407
Query: 402 EGIYPQATPLQQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKF 461
IYPQATPLQQ+A L+ +SS T V P S ++ T S +E +KR +RKF
Sbjct: 408 GDIYPQATPLQQLAFTLKHASSSATQAV-PVTSTPTSMATKGNSILDAEMDKR--SRRKF 464
Query: 462 QELPVGSKGPAKHNQDLQ 479
QELPV SKGPA +Q+ Q
Sbjct: 465 QELPV-SKGPATESQNSQ 481
>sp|Q2NLB0|K0907_XENLA UPF0469 protein KIAA0907 homolog OS=Xenopus laevis PE=2 SV=1
Length = 585
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 41/235 (17%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG+Y G
Sbjct: 102 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRMSGAAVSTRGRYMTAEEKAKIGPG 160
Query: 154 EKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG--------------------HA 193
++PLYLH+ +T E VD A ++E++ G H
Sbjct: 161 DRPLYLHVQG-----QTRE---LVDRAVNRIKEIITSGVVKAATGSSPTFNGATVTVYHQ 212
Query: 194 GFPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNET 244
P V +G+ + +F+G + A A+ N+ ++ GP Y+ HI ET
Sbjct: 213 PAPVTPVVSAAPPKPQFQSGMHYVQDKLFVGLEHAVATFNVKEKVEGPGCSYLQHIQMET 272
Query: 245 GATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 299
GA V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ AE
Sbjct: 273 GAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 327
>sp|Q6NZ18|K0907_DANRE UPF0469 protein KIAA0907 homolog OS=Danio rerio PE=2 SV=1
Length = 570
Score = 119 bits (297), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 117/238 (49%), Gaps = 49/238 (20%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYR--------LPN 148
K++D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++ LP+
Sbjct: 74 KLKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRVSGAAVSTRGRFMTVEEKSKALPS 132
Query: 149 APPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMG----- 203
++PLYLH+ + R L VD A ++E++ G T T G
Sbjct: 133 -----DRPLYLHV-------QGQTRDL-VDKAVNRIKEIITNGVVKAATNSTYSGATVTV 179
Query: 204 ---------------------NGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIM 241
G+ + VF+G D A N+ R+ GP+ ++ HI
Sbjct: 180 YQQSGPSVPTIPSAPHKPHYPGGMHYVQDKVFVGLDQALQGFNVKERVEGPSCSFLQHIQ 239
Query: 242 NETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 299
ETGA V LRG+GSG E G E +P+++++S P+ L AK L ENLL T+ AE
Sbjct: 240 AETGAKVFLRGKGSGCLEPASGREAFEPMYIYISHPKPEGLASAKTLCENLLQTVHAE 297
>sp|A0JM64|K0907_XENTR UPF0469 protein KIAA0907 homolog OS=Xenopus tropicalis PE=2 SV=1
Length = 612
Score = 118 bits (296), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 38/232 (16%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG+Y G
Sbjct: 102 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRMSGAAVSTRGRYMTAEEKAKIGPG 160
Query: 154 EKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG-----HAGFPTLQTV------- 201
++PLYLH+ +T E VD A ++E++ G PT
Sbjct: 161 DRPLYLHVQG-----QTRE---LVDRAVNRIKEIITNGVVKAATGSSPTFNGATVTVYHQ 212
Query: 202 -------------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETGAT 247
+G+ + +F+G + A A+ N+ ++ GP Y+ HI ETGA
Sbjct: 213 PAPVAPVAPPKPQFQSGMHYVQDKLFVGLEHAVATFNVKEKVEGPGCSYLQHIQLETGAK 272
Query: 248 VLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 299
V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ +E
Sbjct: 273 VFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHSE 324
>sp|Q5ZL54|K0907_CHICK UPF0469 protein KIAA0907 homolog OS=Gallus gallus GN=RCJMB04_7l9
PE=2 SV=1
Length = 619
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 116/235 (49%), Gaps = 41/235 (17%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++ G
Sbjct: 107 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRLSGAAVSTRGRFMTAEEKAKVGPG 165
Query: 154 EKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG--------------------HA 193
++PLYLH+ +T E VD A ++E++ G H
Sbjct: 166 DRPLYLHVQG-----QTRE---LVDRAVNRIKEIITNGVVKAATGSSPTFNGATVTVYHQ 217
Query: 194 GFPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNET 244
P Q +G+ + +F+G + A + N+ ++ GP Y+ HI ET
Sbjct: 218 PAPITQMSPAVGQKPPFQSGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIET 277
Query: 245 GATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 299
GA V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ AE
Sbjct: 278 GAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 332
>sp|Q3TCX3|K0907_MOUSE UPF0469 protein KIAA0907 OS=Mus musculus GN=Kiaa0907 PE=2 SV=1
Length = 612
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 116/235 (49%), Gaps = 41/235 (17%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++ G
Sbjct: 99 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRLSGAAVSTRGRFMTTEEKAKVGPG 157
Query: 154 EKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG--------------------HA 193
++PLYLH+ +T E VD A ++E++ G H
Sbjct: 158 DRPLYLHVQG-----QTRE---LVDRAVNRIKEIITNGVVKAATGTSPTFNGATVTVYHQ 209
Query: 194 GFPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNET 244
P Q +G+ + +F+G + A + N+ ++ GP Y+ HI ET
Sbjct: 210 PAPIAQLSPAINQKPSFQSGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIET 269
Query: 245 GATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 299
GA V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ AE
Sbjct: 270 GAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 324
>sp|Q7Z7F0|K0907_HUMAN UPF0469 protein KIAA0907 OS=Homo sapiens GN=KIAA0907 PE=1 SV=1
Length = 614
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 116/235 (49%), Gaps = 41/235 (17%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++ G
Sbjct: 97 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRLSGAAVSTRGRFMTTEEKAKVGPG 155
Query: 154 EKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG--------------------HA 193
++PLYLH+ +T E VD A ++E++ G H
Sbjct: 156 DRPLYLHVQG-----QTRE---LVDRAVNRIKEIITNGVVKAATGTSPTFNGATVTVYHQ 207
Query: 194 GFPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNET 244
P Q +G+ + +F+G + A + N+ ++ GP Y+ HI ET
Sbjct: 208 PAPIAQLSPAVSQKPPFQSGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIET 267
Query: 245 GATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 299
GA V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ AE
Sbjct: 268 GAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 322
>sp|Q09911|YAJE_SCHPO Uncharacterized protein C30D11.14c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC30D11.14c PE=4 SV=1
Length = 534
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 132/301 (43%), Gaps = 42/301 (13%)
Query: 98 VQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAP--PDGEK 155
++ + + +++ IN+ + RY L + T EI+ +G + ++G+Y PN D +
Sbjct: 160 IEGDGVFMQDVEINNVRN--RYILVRASTLSEIENKSGVQLFSKGRY-YPNKALATDKDP 216
Query: 156 PLYLHISAGAH------LKETAERILA-----VDHAAAMVEEMLKQGHAGFPTLQTVMGN 204
PLYLHI + L+E I +D E ++ ++ P + GN
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIESWINKDMGPLIDERRFRRREDNERNNSNSPRNFSTHGN 276
Query: 205 G--------VQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSG 256
G + + V++ ++ I GP Y+ HI ET V ++G+GS
Sbjct: 277 GNGENGQPRRKWLEEKVYINLTPSRGFHLRQAIVGPQGAYVKHIQQETRTRVQIKGQGSA 336
Query: 257 NSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRV--------SSC 308
E E +P+HL + S++P +++ AK L E+L+ ++ + A +
Sbjct: 337 FIEPSTNRESDEPIHLCIMSHDPNAIQRAKVLCEDLIASVHQQYKAWKSQPKDRDQNQGN 396
Query: 309 KVYNAVPPPQQLLTGIQGFGNE--QKLNAGSAVILTSTVNLSSVPLAPSV------PGVT 360
+ YN PP + + E Q NA A ++T ++ + S+P P + PGVT
Sbjct: 397 RAYN--PPNRNQAFSARDSRQEKTQPTNASPAPLVTPSLPVPSIPAVPGMEAMAMPPGVT 454
Query: 361 T 361
+
Sbjct: 455 S 455
>sp|Q75GR5|SPIN1_ORYSJ KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica
GN=SPIN1 PE=1 SV=1
Length = 281
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 218 DADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS----GNSEGLQG----EEVHQP 269
D+ + N RI GP + + TG V +RG+GS G + L+G E + P
Sbjct: 143 DSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGYEHLSDP 202
Query: 270 LHLFLSSNNPKSLEEAK-RLAENLLDTI 296
LH+ + + P S+ +A+ R A+ +++ +
Sbjct: 203 LHILIEAEFPASIIDARLRHAQEVIEEL 230
>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp.
japonica GN=Os08g0159900 PE=2 SV=1
Length = 1049
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 53 GVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELI---IAREIV 109
G V P++P A+ N A LQ + N ++Q + E+
Sbjct: 903 GTSVGPLLPLAIASNTQNNEATAR-------ALQAAFNIQQNLARIQAHAVPEHYEAELE 955
Query: 110 INDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDG--EKPLYLHI 161
IND + R+K+T + T IQ+ TGA + TRG + P G E+ LYL I
Sbjct: 956 INDFPQNARWKITHKETLGPIQEWTGAAITTRGTF-FPQGKIVGANERKLYLFI 1008
>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46
PE=1 SV=2
Length = 1031
Score = 40.4 bits (93), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 935 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 994
Query: 166 HLKETAERILAVDHAAAMVEEMLKQ 190
LAV A A + ++K+
Sbjct: 995 E--------LAVQKAKAEITRLIKE 1011
>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46
PE=1 SV=2
Length = 1032
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 936 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 995
Query: 166 HLKETAERILAVDHAAAMVEEMLKQ 190
LAV A A + ++K+
Sbjct: 996 E--------LAVQKAKAEITRLIKE 1012
>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus
GN=Ddx46 PE=1 SV=1
Length = 1032
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 936 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 995
Query: 166 HLKETAERILAVDHAAAMVEEMLKQ 190
LAV A A + ++K+
Sbjct: 996 E--------LAVQKAKAEITRLIKE 1012
>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46
PE=2 SV=1
Length = 1032
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 936 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 995
Query: 166 HLKETAERILAVDHAAAMVEEMLKQ 190
LAV A A + ++K+
Sbjct: 996 E--------LAVQKAKAEITRLIKE 1012
>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana
GN=RH42 PE=1 SV=2
Length = 1166
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 16/81 (19%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKY----RLPNAPPDGEKPLYLHIS 162
E+ IND + R+K+T + T I + TGA + TRG++ R+P GE+ LYL I
Sbjct: 1070 ELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFYPTGRIPGP---GERKLYLFIE 1126
Query: 163 ---------AGAHLKETAERI 174
A A LK E I
Sbjct: 1127 GPSEKSVKHAKAELKRVLEDI 1147
>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46
PE=2 SV=1
Length = 1018
Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 922 ELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 981
Query: 166 HLKETAERILAVDHAAAMVEEMLKQ 190
LAV A A + ++K+
Sbjct: 982 E--------LAVQKAKAEITRLIKE 998
>sp|Q4WXV6|BBP_ASPFU Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3
SV=1
Length = 566
Score = 39.3 bits (90), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 13/159 (8%)
Query: 150 PPDGEK-----PLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGN 204
P DG++ P Y + + +E R D +VE+ +K P
Sbjct: 120 PADGDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAMKTIPNYHPPSDYRRPT 179
Query: 205 GVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS-----GNSE 259
Q V++ + +N + GP + + E+GA + +RG+GS G S+
Sbjct: 180 KTQ---EKVYVPVNDYPEINFIGLLIGPRGNTLKKMEAESGAKIAIRGKGSVKEGKGRSD 236
Query: 260 GLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISA 298
+ LH + ++ + + +AK+L N+++T ++
Sbjct: 237 AAHASNQEEDLHCLIMADTEEKVNKAKKLVHNVIETAAS 275
>sp|Q64213|SF01_MOUSE Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=6
Length = 653
Score = 38.9 bits (89), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS------GNSEG-- 260
+S V + D +N + GP + +I E A +++RG+GS G +G
Sbjct: 136 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQM 195
Query: 261 LQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 293
L GE+ +PLH +++N +++++A N+L
Sbjct: 196 LPGED--EPLHALVTANTMENVKKAVEQIRNIL 226
>sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4
Length = 639
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS------GNSEG-- 260
+S V + D +N + GP + +I E A +++RG+GS G +G
Sbjct: 136 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQM 195
Query: 261 LQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 293
L GE+ +PLH +++N +++++A N+L
Sbjct: 196 LPGED--EPLHALVTANTMENVKKAVEQIRNIL 226
>sp|Q8GWR3|QKIL5_ARATH KH domain-containing protein At1g09660 OS=Arabidopsis thaliana
GN=At1g09660 PE=2 SV=1
Length = 298
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 13/89 (14%)
Query: 218 DADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNS----EGLQG----EEVHQP 269
D S N RI GP + + T V +RGRGS E L+G E + +P
Sbjct: 156 DKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLCEP 215
Query: 270 LHLFLSSNNPKS-----LEEAKRLAENLL 293
LH+ + + P+ LE A E+LL
Sbjct: 216 LHVLIEAELPEDIINSRLEHAVHFLESLL 244
>sp|Q9FKT4|QKIL2_ARATH KH domain-containing protein At5g56140 OS=Arabidopsis thaliana
GN=At5g56140 PE=2 SV=1
Length = 315
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 218 DADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNS----EGLQG----EEVHQP 269
D + N R+ GP + + T VL+RGRGS E ++G E +++P
Sbjct: 175 DNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNEP 234
Query: 270 LHLFLSSNNPKSLEEAKRL-AENLLDTI 296
LH+ + + P + +A+ + A +LD +
Sbjct: 235 LHILVEAELPIEIVDARLMQAREILDDL 262
>sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana
GN=RH45 PE=2 SV=1
Length = 989
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGK-YRLPNAPPDGEKPLYLHI---- 161
E+ IND + R+K+T + T I + +GA + TRGK Y P E+ LYL +
Sbjct: 893 ELEINDFPQNARWKVTHKETLGPISEWSGASITTRGKFYEAGRIPGPEERKLYLFVEGPT 952
Query: 162 -----SAGAHLKETAERI 174
+A A LK E I
Sbjct: 953 EISVKTAKAELKRVLEDI 970
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bpb-1 PE=3 SV=1
Length = 607
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 223 LNIAARIRGPNDQYINHIMNETGATVLLRGRGS-----GNSEGLQGEEVHQPLHLFLSSN 277
+N + GP + + E+GA + +RG+GS G S+ + LH + ++
Sbjct: 210 INFIGLLIGPRGNTLKKMETESGAKIAIRGKGSVKEGKGRSDAAHSSNQEEDLHCLIMAD 269
Query: 278 NPKSLEEAKRLAENLLDTISA 298
+ + +AK+L N+++T ++
Sbjct: 270 TEEKVNKAKKLIHNIIETAAS 290
>sp|Q0WLR1|QKIL1_ARATH KH domain-containing protein At4g26480 OS=Arabidopsis thaliana
GN=At4g26480 PE=2 SV=1
Length = 308
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 218 DADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNS----EGLQG----EEVHQP 269
D + N R+ GP + + T VL+RGRGS + ++G E +++P
Sbjct: 169 DKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGYEHLNEP 228
Query: 270 LHLFLSSNNPKSLEEAKRL-AENLLDTI 296
LH+ + + P + +A+ + A +LD +
Sbjct: 229 LHILVEAELPIEIVDARLMQAREILDDL 256
>sp|Q0J7Y8|RH45_ORYSJ DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp.
japonica GN=Os08g0154200 PE=3 SV=2
Length = 947
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 85 LQGPLPPKFNQPKVQDELI---IAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITR 141
LQ L + N ++Q ++ E+ IND + R+K+T + T IQ T A + TR
Sbjct: 770 LQAALNIQQNLARIQAHVVPEHYEVELDINDFPQNARWKITHKETLGPIQDWTEAAITTR 829
Query: 142 GKYRLPNAPPDG--EKPLYLHISAGAHL 167
G + +P G E+ LYL I L
Sbjct: 830 GTF-IPQGKIVGANERKLYLFIEGPTEL 856
>sp|Q5AED9|BBP_CANAL Branchpoint-bridging protein OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=BBP PE=3 SV=1
Length = 455
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 222 SLNIAARIRGPNDQYINHIMNETGATVLLRGRGS----GNSEGL----QGEEVHQPLHLF 273
+N + GP + + ++GA + +RG+GS +S+G G ++ LH+
Sbjct: 161 DINFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKEGKSSDGFGSSQTGTDIQDDLHVL 220
Query: 274 LSSNNPKSLEEAKRLAENLLDTI 296
+++++P + +A +L ++D +
Sbjct: 221 ITADSPLKISKAVKLVNEIIDKL 243
>sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610 OS=Arabidopsis thaliana
GN=At2g38610 PE=1 SV=1
Length = 286
Score = 35.8 bits (81), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 218 DADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS----GNSEGLQG----EEVHQP 269
D + N R+ GP + + TG V +RG+GS + L+G E +++
Sbjct: 145 DNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHLNEQ 204
Query: 270 LHLFLSSNNPKS-----LEEAKRLAENLLDTI 296
LH+ + ++ P S L +A+ + E LL +
Sbjct: 205 LHILIEADLPASIVEIRLRQAQEIIEELLKPV 236
>sp|A4RN46|PRP5_MAGO7 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=PRP5 PE=3 SV=1
Length = 1012
Score = 35.4 bits (80), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 110 INDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNA-PPDGEKP-LYLHISAGAHL 167
IND R+ +T R +I + TG + T+G Y P PP G P LY+ I
Sbjct: 917 INDFPQKARWAVTNRTNVAKILEATGTSITTKGNYYPPGKDPPAGADPKLYILIEGDTE- 975
Query: 168 KETAERILAVDHAAAMVEEMLKQG 191
L V +A + + +LK+G
Sbjct: 976 -------LVVGNALSELTRLLKEG 992
>sp|Q8GYR4|QKIL4_ARATH KH domain-containing protein At3g08620 OS=Arabidopsis thaliana
GN=At3g08620 PE=2 SV=1
Length = 283
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 215 LGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS----GNSEGLQG----EEV 266
L D + N R+ GP + + TG V +RG+GS E L+G E +
Sbjct: 141 LPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHL 200
Query: 267 HQPLHLFLSSNNPKSLEEAK-RLAENLLDTI 296
++ LH+ + ++ P + + K R A+ +++ +
Sbjct: 201 NEQLHILIEADLPIDIVDIKLRQAQEIIEEL 231
>sp|Q07666|KHDR1_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1
Length = 443
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 24/117 (20%)
Query: 223 LNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGE----------EVHQPLHL 272
N +I GP I + ETGA + + G+GS + + E ++ LH+
Sbjct: 170 FNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHV 229
Query: 273 FLSSNNP---------KSLEEAKR-LAENLLDTISAECGASRVSSCKVYNAVPPPQQ 319
F+ P ++EE K+ L +++D I E + N VP P +
Sbjct: 230 FIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQE----QFLELSYLNGVPEPSR 282
>sp|Q91V33|KHDR1_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1
Length = 443
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 24/117 (20%)
Query: 223 LNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGE----------EVHQPLHL 272
N +I GP I + ETGA + + G+GS + + E ++ LH+
Sbjct: 170 FNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHV 229
Query: 273 FLSSNNP---------KSLEEAKR-LAENLLDTISAECGASRVSSCKVYNAVPPPQQ 319
F+ P ++EE K+ L +++D I E + N VP P +
Sbjct: 230 FIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQE----QFLELSYLNGVPEPSR 282
>sp|Q60749|KHDR1_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2
Length = 443
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 24/117 (20%)
Query: 223 LNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGE----------EVHQPLHL 272
N +I GP I + ETGA + + G+GS + + E ++ LH+
Sbjct: 170 FNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHV 229
Query: 273 FLSSNNP---------KSLEEAKR-LAENLLDTISAECGASRVSSCKVYNAVPPPQQ 319
F+ P ++EE K+ L +++D I E + N VP P +
Sbjct: 230 FIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQE----QFLELSYLNGVPEPSR 282
>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC
9021) GN=BBP PE=3 SV=1
Length = 625
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 67/157 (42%), Gaps = 9/157 (5%)
Query: 150 PPDGEK-----PLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGN 204
PPD E+ P Y + + +E R D A+V+ LK P
Sbjct: 184 PPDRERSPSPPPTYDNQGRRTNTREVRYRKKLEDERVALVDRQLKLDPNFRPPSDYHAIK 243
Query: 205 GVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS---GNSEGL 261
Q + V+L + + GP + + ++GA + +RG+GS G + +
Sbjct: 244 RNQRPTEKVYLPIKEFPEIKFFGLLVGPRGNTLKTMERQSGAKISIRGKGSVKTGKGK-M 302
Query: 262 QGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISA 298
+E + +H +++++ S+++ +L +++T ++
Sbjct: 303 DADEDEEEMHCVVTADDEASVKKCIKLINQVIETAAS 339
>sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1
PE=3 SV=1
Length = 501
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 207 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS---GNSEGLQG 263
+ + +++ N I GP + E+GA + +RG+GS G LQ
Sbjct: 177 EKKTRKIYIPIKNHPEYNFIGLIIGPRGNTQKRMEKESGAKIAIRGKGSSRDGKPTKLQF 236
Query: 264 EEVHQPLHLFLSSNNPKSLEEAKRLAENLL 293
+E + LH+ L+++ L++A+ L L
Sbjct: 237 QENDE-LHVLLTADTVDQLDKAEVLVREFL 265
>sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helicase prp11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp11 PE=3 SV=1
Length = 1014
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 110 INDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD-GEKPLYLHISAGAHL 167
IND R+ +T + + TG + T+G + LP P+ GE+ LYL I + L
Sbjct: 920 INDYPQQARWAVTNNTNIVHVTELTGTSITTKGNFYLPGKNPEPGEEKLYLWIEGPSEL 978
>sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) GN=PRP5 PE=3 SV=1
Length = 1064
Score = 33.1 bits (74), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 110 INDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKP-LYLHISAGAHL 167
IND R+ +T R +I + T + T+G Y P PP G P LY+ I
Sbjct: 969 INDFPQKARWAVTNRTNVAKILEATSTSITTKGNYYPPGKEPPSGSDPKLYILIEGDTE- 1027
Query: 168 KETAERILAVDHAAAMVEEMLKQG 191
LAV A + + +L++G
Sbjct: 1028 -------LAVGKALSELTRLLREG 1044
>sp|A6UF15|KDSB_SINMW 3-deoxy-manno-octulosonate cytidylyltransferase OS=Sinorhizobium
medicae (strain WSM419) GN=kdsB PE=3 SV=1
Length = 250
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 141 RGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQT 200
R Y P GE PLY HI A+ + E +++ +A E L+Q A L+
Sbjct: 162 RALYFTRATAPYGEGPLYHHIGLYAYRRRALETFVSLKPSALEKRESLEQLRA----LEA 217
Query: 201 VMGNGVQAMSTSVFLGFDADASLNIAARI 229
M V+ + SV LG D A L+ A RI
Sbjct: 218 GMRIDVEIVD-SVPLGVDTPADLDKARRI 245
>sp|O74555|BBP_SCHPO Branchpoint-bridging protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bpb1 PE=1 SV=1
Length = 587
Score = 32.7 bits (73), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 73/189 (38%), Gaps = 22/189 (11%)
Query: 119 YKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD----GEKPLYLHISAGAHLKETAERI 174
Y L R +E QK V+ + R P+ PP G + I L++ RI
Sbjct: 105 YSLNVR-LEEITQKLRTGDVVPHHRERSPSPPPQYDNHGRRLNTREIRYKKKLEDERHRI 163
Query: 175 LAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPND 234
++ A MV P V++ +N + GP
Sbjct: 164 --IERAMKMVPGFRAPSDYRRPA----------KTQEKVYVPVKDYPEINFIGLLIGPRG 211
Query: 235 QYINHIMNETGATVLLRGRGS-----GNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289
+ + ++GA + +RG+GS G S+ + + LH +++++ + A +L
Sbjct: 212 HTLKDMEAKSGAKIAIRGKGSVKEGKGRSDPSVRGNMEEDLHCLVTADSEDKINHAIKLI 271
Query: 290 ENLLDTISA 298
+N++ T ++
Sbjct: 272 DNVIQTAAS 280
>sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=PRP5 PE=3 SV=1
Length = 994
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 108 IVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNA---PPDGEKPLYLHISAG 164
+ IND VR+ + +R + +I + + + TRG++ P + P + + LYL I G
Sbjct: 898 VTINDLPQKVRWGIVQRESLSKIIEASKTSITTRGQFYPPQSKQTPTNDQPKLYLLIE-G 956
Query: 165 AHLKETAERILAVDHAAAMVEEMLKQG 191
K AV+ AA ++ + + QG
Sbjct: 957 LTRK-------AVEEAAVLIRDKMLQG 976
>sp|Q32NN2|QKIA_XENLA Protein quaking-A OS=Xenopus laevis GN=qki-a PE=1 SV=2
Length = 341
Score = 32.3 bits (72), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 19/139 (13%)
Query: 222 SLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 281
N RI GP + ETG +++RG+GS + + + +P
Sbjct: 96 DFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKP------------ 143
Query: 282 LEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLT-GIQGFGNEQKLNAGSAVI 340
+ L E+L I+ E +R + K+ AV ++LL +G + +K+ I
Sbjct: 144 --NWEHLNEDLHVLITVEDAQNR-AELKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAI 200
Query: 341 LTST---VNLSSVPLAPSV 356
L T NL S LA S+
Sbjct: 201 LNGTYRDANLKSPALAFSL 219
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,183,299
Number of Sequences: 539616
Number of extensions: 7806182
Number of successful extensions: 27547
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 200
Number of HSP's that attempted gapping in prelim test: 26730
Number of HSP's gapped (non-prelim): 893
length of query: 481
length of database: 191,569,459
effective HSP length: 121
effective length of query: 360
effective length of database: 126,275,923
effective search space: 45459332280
effective search space used: 45459332280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)