Query 011603
Match_columns 481
No_of_seqs 209 out of 484
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 11:34:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqr_A KIAA0907 protein; struc 100.0 8.3E-31 2.8E-35 230.4 9.4 103 203-305 6-109 (119)
2 2bl5_A MGC83862 protein, quaki 99.9 7.4E-28 2.5E-32 217.1 0.3 103 209-311 2-117 (140)
3 1k1g_A SF1-BO isoform; splicin 99.9 2.1E-25 7.2E-30 198.5 6.0 103 207-309 5-116 (131)
4 3krm_A Insulin-like growth fac 99.3 8.3E-12 2.8E-16 111.2 12.5 147 117-300 14-161 (163)
5 2jvz_A KH type-splicing, FAR u 99.3 2.5E-11 8.4E-16 107.6 14.6 157 105-297 3-162 (164)
6 2jzx_A Poly(RC)-binding protei 99.2 9.6E-11 3.3E-15 104.0 9.5 153 104-294 5-158 (160)
7 1j4w_A FUSE binding protein; s 99.1 4.2E-10 1.4E-14 101.5 12.2 147 117-293 14-174 (174)
8 2anr_A Neuro-oncological ventr 99.1 2.5E-10 8.5E-15 103.2 9.1 159 104-294 6-174 (178)
9 2opv_A KHSRP protein; KH domai 98.9 4.3E-09 1.5E-13 85.9 7.9 72 208-294 13-84 (85)
10 1zzk_A Heterogeneous nuclear r 98.7 2.1E-08 7.2E-13 81.3 6.3 74 208-298 6-79 (82)
11 1x4m_A FAR upstream element bi 98.7 1.7E-08 5.9E-13 84.0 5.7 73 207-294 13-85 (94)
12 1x4n_A FAR upstream element bi 98.6 2.8E-08 9.5E-13 82.5 5.3 72 208-296 14-85 (92)
13 1dtj_A RNA-binding neurooncolo 98.6 4.2E-08 1.4E-12 77.8 6.0 71 210-294 4-74 (76)
14 2hh3_A KH-type splicing regula 98.6 4.9E-08 1.7E-12 83.7 6.3 70 210-296 12-81 (106)
15 2e3u_A PH-DIM2P, hypothetical 98.6 2.4E-08 8.1E-13 95.6 4.5 148 106-295 36-191 (219)
16 1j5k_A Heterogeneous nuclear r 98.6 2.9E-08 9.9E-13 81.8 4.2 75 208-299 13-87 (89)
17 2hh2_A KH-type splicing regula 98.6 6.1E-08 2.1E-12 82.7 6.0 72 210-295 8-79 (107)
18 2ctm_A Vigilin; K homology typ 98.6 7.1E-08 2.4E-12 81.0 5.9 77 208-302 16-92 (95)
19 2cte_A Vigilin; K homology typ 98.6 5E-08 1.7E-12 81.3 4.9 71 209-298 17-87 (94)
20 1ec6_A RNA-binding protein NOV 98.5 8.5E-08 2.9E-12 78.4 5.5 76 210-299 4-79 (87)
21 2ctl_A Vigilin; K homology typ 98.5 1.5E-07 5.3E-12 79.1 7.0 76 209-300 17-92 (97)
22 1we8_A Tudor and KH domain con 98.5 1.3E-07 4.3E-12 80.1 6.1 72 209-295 15-86 (104)
23 1wvn_A Poly(RC)-binding protei 98.5 8.9E-08 3.1E-12 77.5 4.3 70 209-295 6-75 (82)
24 2p2r_A Poly(RC)-binding protei 98.5 8.6E-08 2.9E-12 76.4 4.0 69 209-294 5-73 (76)
25 2dgr_A Ring finger and KH doma 98.5 1.1E-07 3.7E-12 78.4 4.5 65 209-293 10-74 (83)
26 2ctk_A Vigilin; K homology typ 98.4 1.6E-07 5.3E-12 80.1 4.6 75 209-302 17-91 (104)
27 1vig_A Vigilin; RNA-binding pr 98.4 2.3E-07 7.9E-12 73.7 4.7 65 210-293 6-70 (71)
28 2axy_A Poly(RC)-binding protei 98.3 2.9E-07 9.9E-12 73.3 3.8 67 209-294 5-71 (73)
29 1tua_A Hypothetical protein AP 98.3 4E-07 1.4E-11 85.7 4.0 145 107-295 7-160 (191)
30 2qnd_A FMR1 protein; KH domain 98.2 3E-06 1E-10 75.6 8.2 137 104-296 4-143 (144)
31 2ctj_A Vigilin; K homology typ 98.0 3.1E-06 1E-10 71.3 4.3 69 209-296 17-86 (95)
32 2jvz_A KH type-splicing, FAR u 98.0 8E-06 2.7E-10 72.1 6.8 70 211-295 4-73 (164)
33 1j4w_A FUSE binding protein; s 98.0 4.9E-06 1.7E-10 74.9 4.7 70 211-297 5-74 (174)
34 2cpq_A FragIle X mental retard 97.8 5.4E-06 1.8E-10 70.1 2.4 63 210-293 16-79 (91)
35 2jzx_A Poly(RC)-binding protei 97.7 2.3E-05 8E-10 69.3 4.0 68 209-295 5-72 (160)
36 3krm_A Insulin-like growth fac 97.7 3.6E-05 1.2E-09 68.3 4.9 69 211-295 5-73 (163)
37 2yqr_A KIAA0907 protein; struc 97.7 0.00011 3.8E-09 64.6 7.9 80 103-190 11-99 (119)
38 2anr_A Neuro-oncological ventr 97.6 2.9E-05 9.9E-10 70.0 4.1 72 209-294 6-77 (178)
39 1k1g_A SF1-BO isoform; splicin 97.5 0.00014 4.9E-09 64.6 6.3 80 104-191 7-100 (131)
40 3u1k_A Polyribonucleotide nucl 97.4 7.7E-05 2.6E-09 81.0 4.2 62 210-293 568-629 (630)
41 2ctf_A Vigilin; K homology typ 97.1 0.001 3.4E-08 56.5 7.0 71 209-301 27-98 (102)
42 4aid_A Polyribonucleotide nucl 96.8 0.00071 2.4E-08 74.7 4.8 91 225-347 580-670 (726)
43 3n89_A Defective in GERM LINE 96.6 0.0039 1.3E-07 64.2 7.8 72 209-293 186-259 (376)
44 2bl5_A MGC83862 protein, quaki 96.6 0.0037 1.3E-07 56.5 6.6 83 105-190 3-101 (140)
45 2e3u_A PH-DIM2P, hypothetical 96.4 0.0025 8.5E-08 61.0 4.6 63 210-293 35-101 (219)
46 3n89_A Defective in GERM LINE 96.2 0.0025 8.6E-08 65.6 3.6 74 207-292 28-103 (376)
47 2qnd_A FMR1 protein; KH domain 96.1 0.0031 1.1E-07 56.1 3.3 61 209-289 4-64 (144)
48 1zzk_A Heterogeneous nuclear r 95.6 0.05 1.7E-06 43.7 8.1 70 104-191 7-77 (82)
49 1dtj_A RNA-binding neurooncolo 95.2 0.04 1.4E-06 43.2 6.3 71 105-190 4-75 (76)
50 2opv_A KHSRP protein; KH domai 95.1 0.074 2.5E-06 43.0 7.7 70 104-190 14-85 (85)
51 1wvn_A Poly(RC)-binding protei 94.9 0.038 1.3E-06 44.3 5.4 70 104-191 6-76 (82)
52 2p2r_A Poly(RC)-binding protei 94.8 0.037 1.3E-06 43.7 5.2 70 104-191 5-75 (76)
53 1x4n_A FAR upstream element bi 94.7 0.042 1.4E-06 45.2 5.3 72 104-193 15-87 (92)
54 2hh2_A KH-type splicing regula 94.5 0.045 1.5E-06 46.3 5.3 73 106-193 9-82 (107)
55 1j5k_A Heterogeneous nuclear r 94.5 0.05 1.7E-06 44.4 5.3 71 103-191 13-84 (89)
56 1x4m_A FAR upstream element bi 94.4 0.058 2E-06 44.5 5.5 74 102-191 13-87 (94)
57 1we8_A Tudor and KH domain con 94.3 0.15 5.1E-06 42.8 8.0 77 100-192 11-88 (104)
58 2hh3_A KH-type splicing regula 94.2 0.08 2.7E-06 45.1 6.0 71 105-193 12-83 (106)
59 3v69_A Protein filia; RNA-bind 94.1 0.055 1.9E-06 49.1 5.1 69 222-302 63-131 (140)
60 1vig_A Vigilin; RNA-binding pr 94.0 0.08 2.7E-06 41.6 5.4 65 104-188 5-70 (71)
61 1e3p_A Guanosine pentaphosphat 94.0 0.026 8.8E-07 62.7 3.4 93 225-347 608-700 (757)
62 2dgr_A Ring finger and KH doma 93.8 0.1 3.4E-06 42.7 5.8 67 104-191 10-77 (83)
63 2cte_A Vigilin; K homology typ 93.8 0.12 4E-06 42.7 6.2 68 104-191 17-85 (94)
64 2axy_A Poly(RC)-binding protei 93.7 0.087 3E-06 41.5 5.1 68 104-191 5-73 (73)
65 3cdi_A Polynucleotide phosphor 93.4 0.031 1.1E-06 61.7 2.6 54 225-294 570-623 (723)
66 2ctk_A Vigilin; K homology typ 92.6 0.14 4.9E-06 43.2 5.1 67 104-190 17-84 (104)
67 4fxw_B Splicing factor 1; UHM, 92.4 0.093 3.2E-06 46.7 3.8 69 127-200 50-121 (124)
68 1ec6_A RNA-binding protein NOV 92.2 0.33 1.1E-05 39.2 6.5 70 107-191 6-76 (87)
69 2ctm_A Vigilin; K homology typ 92.1 0.25 8.7E-06 41.1 6.0 69 104-191 17-86 (95)
70 2ctl_A Vigilin; K homology typ 91.6 0.37 1.3E-05 40.2 6.4 70 104-190 17-87 (97)
71 1tua_A Hypothetical protein AP 90.4 0.31 1.1E-05 45.8 5.3 69 210-299 5-77 (191)
72 2ctj_A Vigilin; K homology typ 88.7 0.37 1.3E-05 40.2 4.0 68 104-191 17-86 (95)
73 2ctf_A Vigilin; K homology typ 81.5 3.2 0.00011 34.9 6.4 65 104-191 27-93 (102)
74 2cpq_A FragIle X mental retard 69.6 2.7 9.4E-05 35.2 2.8 63 104-188 15-79 (91)
75 2z0s_A Probable exosome comple 46.6 24 0.00081 33.5 5.2 47 225-287 158-204 (235)
76 3u1k_A Polyribonucleotide nucl 44.9 14 0.00046 40.4 3.6 61 106-189 569-630 (630)
77 1wjw_A Phosphoacetylglucosamin 35.8 1.3E+02 0.0045 25.2 7.7 50 235-299 45-96 (112)
78 4hhu_A OR280; engineered prote 35.0 72 0.0024 28.7 6.1 36 238-285 63-100 (170)
79 2cxc_A NUSA; transcription ter 33.5 9.8 0.00033 34.2 0.3 27 226-252 47-73 (144)
80 2ba0_A Archeal exosome RNA bin 31.4 31 0.0011 32.7 3.4 39 225-279 146-184 (229)
81 2qn6_B Translation initiation 27.4 70 0.0024 26.7 4.5 34 154-191 50-84 (93)
82 3ldc_A Calcium-gated potassium 27.0 26 0.0009 27.7 1.7 15 399-414 43-57 (82)
83 3iev_A GTP-binding protein ERA 22.4 20 0.00069 34.4 0.3 39 208-251 239-285 (308)
84 3i38_A Putative chaperone DNAJ 21.9 76 0.0026 26.6 3.8 47 243-295 49-96 (109)
85 4h33_A LMO2059 protein; bilaye 21.3 47 0.0016 28.7 2.4 15 399-414 58-72 (137)
86 3eff_K Voltage-gated potassium 20.7 49 0.0017 28.2 2.3 15 399-414 55-69 (139)
87 3gpk_A PPIC-type peptidyl-prol 20.6 93 0.0032 26.2 4.0 29 270-299 11-39 (112)
88 3k5i_A Phosphoribosyl-aminoimi 20.4 1.4E+02 0.0049 29.6 6.0 52 225-283 332-388 (403)
89 2kpo_A Rossmann 2X2 fold prote 20.1 88 0.003 26.4 3.6 22 270-291 3-24 (110)
No 1
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.97 E-value=8.3e-31 Score=230.42 Aligned_cols=103 Identities=37% Similarity=0.671 Sum_probs=99.2
Q ss_pred CCCcccceeEEEecCC-CCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q 011603 203 GNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 281 (481)
Q Consensus 203 ~~G~k~~eeKI~Iple-~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~ 281 (481)
..|++|+++|||||++ ++|+|||+|+||||+|+|+|+|++||||||.||||||+++|+.+++|++|||||+|+++++++
T Consensus 6 ~~~~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~ 85 (119)
T 2yqr_A 6 SGGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEG 85 (119)
T ss_dssp CSCCSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHH
T ss_pred CCCeeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHH
Confidence 4677999999999999 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc
Q 011603 282 LEEAKRLAENLLDTISAECGASRV 305 (481)
Q Consensus 282 v~~Ak~LiE~LL~tV~eE~~~~r~ 305 (481)
+++|++||++||.+++++|+.|+-
T Consensus 86 i~~A~~~Ie~Ll~~v~~~~~~~~~ 109 (119)
T 2yqr_A 86 LAAAKKLCENLLQTVHAEYSRFVN 109 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHH
Confidence 999999999999999999999953
No 2
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=99.93 E-value=7.4e-28 Score=217.14 Aligned_cols=103 Identities=19% Similarity=0.369 Sum_probs=89.5
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCC----CCCC----CCCCCCcEEEEEeCCHH
Q 011603 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSE----GLQG----EEVHQPLHLFLSSNNPK 280 (481)
Q Consensus 209 ~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E----~~~g----~Es~EPLHV~Isa~~~e 280 (481)
+++|||||++.||+|||+|+||||+|+|+|+||+||||||+||||||++.+ ...+ ++.+|||||+|++++++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 579999999999999999999999999999999999999999999999742 1122 36899999999999986
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 011603 281 -----SLEEAKRLAENLLDTISAECGASRVSSCKVY 311 (481)
Q Consensus 281 -----~v~~Ak~LiE~LL~tV~eE~~~~r~~~~~~y 311 (481)
.|++|+++|++||.++.+.++.++......+
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eL 117 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMEL 117 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGG
T ss_pred hhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHH
Confidence 8999999999999999887777765444444
No 3
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.91 E-value=2.1e-25 Score=198.51 Aligned_cols=103 Identities=20% Similarity=0.339 Sum_probs=87.8
Q ss_pred ccceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCC------CCCCCCCCCcEEEEEeCCHH
Q 011603 207 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEG------LQGEEVHQPLHLFLSSNNPK 280 (481)
Q Consensus 207 k~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~------~~g~Es~EPLHV~Isa~~~e 280 (481)
..+++|||||++.||+|||+|+||||+|+|+|+|++||||||.||||||++.+. ...++++|||||+|++++.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457899999999999999999999999999999999999999999999998532 22356889999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHHhhhcccccccc
Q 011603 281 SLEEAKRLAENLLDT---ISAECGASRVSSCK 309 (481)
Q Consensus 281 ~v~~Ak~LiE~LL~t---V~eE~~~~r~~~~~ 309 (481)
.+++|+++|++||.. +-+.++.++.....
T Consensus 85 ~~~~A~~~I~~ll~~~~~~p~~~d~~k~~Ql~ 116 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQGIETPEDQNDLRKMQLR 116 (131)
T ss_dssp HHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGH
T ss_pred HHHHHHHHHHHHHhccCCCCccHHHHHHHHHH
Confidence 999999999999976 44455555544333
No 4
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.34 E-value=8.3e-12 Score=111.20 Aligned_cols=147 Identities=15% Similarity=0.118 Sum_probs=108.7
Q ss_pred cceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 011603 117 VRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGF 195 (481)
Q Consensus 117 ~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~AvaeIkEILKe~p~~~ 195 (481)
++..+.+ |+++++|++.|||.|..--.-+ ++..--.+.|.|.. +.+.+|..+|.+++.+...+.
T Consensus 14 ~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~------~~~~~r~v~I~G~~---------e~v~~A~~~I~~~~~e~~~~~ 78 (163)
T 3krm_A 14 VGAIIGKKGQHIKQLSRFASASIKIAPPET------PDSKVRMVIITGPP---------EAQFKAQGRIYGKLKEENFFG 78 (163)
T ss_dssp HHHHHCGGGHHHHHHHHHHTCEEEECCCSS------TTCSEEEEEEEECH---------HHHHHHHHHHHHHHHHTTSSC
T ss_pred cceeECCCcHHHHHHHHHHCCeEEEcCCCC------CCCCceEEEEEcCH---------HHHHHHHHHHHHHHhcccccc
Confidence 6778886 9999999999999988743211 22333456888954 478899999999988763322
Q ss_pred CCccccCCCCcccceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEE
Q 011603 196 PTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLS 275 (481)
Q Consensus 196 pp~~~p~~~G~k~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Is 275 (481)
+.. ......+|.||- +++|+|||++|.++|+|+++|||+|.|-..+.. ...+.-.|.|+
T Consensus 79 ~~~-------~~~~~~~i~vp~------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~--------~~~~~~~v~I~ 137 (163)
T 3krm_A 79 PKE-------EVKLETHIRVPA------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTP--------DENDQVIVKII 137 (163)
T ss_dssp SSC-------CCCEEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCC--------CTTSEEEEEEE
T ss_pred ccc-------CCceEEEEEcCh------hheeeEEcCCChHHHHHHHHhCCeEEECCCCCC--------CCCCceEEEEE
Confidence 111 112345777873 479999999999999999999999999764321 12344578999
Q ss_pred eCCHHHHHHHHHHHHHHHHHHHHhh
Q 011603 276 SNNPKSLEEAKRLAENLLDTISAEC 300 (481)
Q Consensus 276 a~~~e~v~~Ak~LiE~LL~tV~eE~ 300 (481)
| +++++++|+++|++||..+++..
T Consensus 138 G-~~~~v~~A~~~I~~~i~~~~~~~ 161 (163)
T 3krm_A 138 G-HFYASQMAQRKIRDILAQVKQQH 161 (163)
T ss_dssp E-CHHHHHHHHHHHHHHHHHHTC--
T ss_pred e-CHHHHHHHHHHHHHHHHHHHHhh
Confidence 9 89999999999999999887765
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.32 E-value=2.5e-11 Score=107.59 Aligned_cols=157 Identities=19% Similarity=0.282 Sum_probs=110.6
Q ss_pred EEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHH
Q 011603 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (481)
Q Consensus 105 ~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Avae 183 (481)
..+|.|..-- ++..+.+ |+++++|+++|||.|.+.- ....++..--.+.|.|.. +.|++|..+
T Consensus 3 ~~~~~Vp~~~--~g~iIGk~G~~Ik~i~~~tg~~I~i~~-----~~~~~~~~~r~v~I~G~~---------~~v~~A~~~ 66 (164)
T 2jvz_A 3 VQEIMIPAGK--AGLVIGKGGETIKQLQERAGVKMILIQ-----DGSQNTNVDKPLRIIGDP---------YKVQQACEM 66 (164)
T ss_dssp EEEEEECTTC--HHHHTCTTTHHHHHHHHTSCSEEEECC-----CTTSSSSSCEEEEEEECH---------HHHHHHHHH
T ss_pred EEEEEechhh--eeEEECCChHHHHHHHHHhCCeEEEec-----CCCCCCCCceEEEEEcCH---------HHHHHHHHH
Confidence 4566776544 7888887 9999999999999987621 111112222356788853 479999999
Q ss_pred HHHHHHcCCCC-CCCccccCCCCcc-cceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCC
Q 011603 184 VEEMLKQGHAG-FPTLQTVMGNGVQ-AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGL 261 (481)
Q Consensus 184 IkEILKe~p~~-~pp~~~p~~~G~k-~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~ 261 (481)
|.+++.+.... ..+ ...++.. ....+|.||- +++|+|||++|.++|+|+++|||+|.|-....
T Consensus 67 I~~ii~e~~~~~~~~---~~~~~~~~~~~~~i~vp~------~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~------ 131 (164)
T 2jvz_A 67 VMDILRERDQGGFGD---RNEYGSRIGGGIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG------ 131 (164)
T ss_dssp HHHHTTCSSSCCCSS---CSSCTTSCSSSBCCEEET------TTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT------
T ss_pred HHHHHHhccCCCCCC---ccccCCCCCceEEEEECh------hhccccCCCCcHhHHHHHHHHCCeEEEeCCCC------
Confidence 99999876421 111 1123321 1345666663 36999999999999999999999999975321
Q ss_pred CCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 011603 262 QGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTIS 297 (481)
Q Consensus 262 ~g~Es~EPLHV~Isa~~~e~v~~Ak~LiE~LL~tV~ 297 (481)
....-.|.|+|. ++++++|++++++||+.+.
T Consensus 132 ----~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 132 ----TGPEKIAHIMGP-PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp ----TSSEEEEEEESC-HHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCcEEEEEEcC-HHHHHHHHHHHHHHHhhhh
Confidence 122357888886 9999999999999998754
No 6
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.16 E-value=9.6e-11 Score=104.02 Aligned_cols=153 Identities=15% Similarity=0.156 Sum_probs=108.4
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Ava 182 (481)
+...+.|..- .++..+.+ |.++++|+++|||.|.+... +..--.+.|.|.. +.|++|..
T Consensus 5 ~~~~~~vp~~--~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~---------~~~~r~v~I~G~~---------~~v~~A~~ 64 (160)
T 2jzx_A 5 LTIRLLMHGK--EVGSIIGKKGESVKKMREESGARINISEG---------NCPERIITLAGPT---------NAIFKAFA 64 (160)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCSEEEEECC---------TTTEEEEEEEEEH---------HHHHHHHH
T ss_pred EEEEEEEchh--heeeeECCCcHHHHHHHHHHCCEEEEcCC---------CCCceEEEEEeCH---------HHHHHHHH
Confidence 4556666543 26777876 89999999999999888531 1223456788864 47899999
Q ss_pred HHHHHHHcCCCCCCCccccCCCCcccceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCC
Q 011603 183 MVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQ 262 (481)
Q Consensus 183 eIkEILKe~p~~~pp~~~p~~~G~k~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~ 262 (481)
+|.++|.+......+... .........++.||- +++|+|||++|.++|.|+++|||+|.|.+.. .
T Consensus 65 ~I~~~i~e~~~~~~~~~~--~~~~~~~~~~i~vp~------~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~------~- 129 (160)
T 2jzx_A 65 MIIDKLEEDISSSMTNST--AASRPPVTLRLVVPA------SQCGSLIGKGGCKIKEIRESTGAQVQVAGDM------L- 129 (160)
T ss_dssp HHHHHHHHHHTSCCCSSS--CCCCCSEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHSSEECCCCCC------S-
T ss_pred HHHHHHHhhccccCCCCc--cCCCCCEEEEEEECh------hheeeEECCCCHHHHHHHHHhCCeEEECCCC------C-
Confidence 999888775221111000 001123466778873 5799999999999999999999999997521 1
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 011603 263 GEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 294 (481)
Q Consensus 263 g~Es~EPLHV~Isa~~~e~v~~Ak~LiE~LL~ 294 (481)
.....=.|.|+| +++++++|+++|+++|.
T Consensus 130 --~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 130 --PNSTERAITIAG-IPQSIIECVKQICVVML 158 (160)
T ss_dssp --TTCCEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred --CCCCceEEEEEc-CHHHHHHHHHHHHHHHh
Confidence 112345788999 89999999999999874
No 7
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.12 E-value=4.2e-10 Score=101.51 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=99.2
Q ss_pred cceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHHHHHHcCCCC-
Q 011603 117 VRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAG- 194 (481)
Q Consensus 117 ~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~AvaeIkEILKe~p~~- 194 (481)
++..+.| |+++++|+++|||.|.+... .....+ -.+.|.|.. +.|++|+.+|.+++.+....
T Consensus 14 vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~~~~--r~v~I~G~~---------~~v~~A~~~I~~~~~~~~~~~ 77 (174)
T 1j4w_A 14 VGIVIGRNGEMIKKIQNDAGVRIQFKPD-----DGTTPE--RIAQITGPP---------DRAQHAAEIITDLLRSVQAGN 77 (174)
T ss_dssp HHHHHCGGGHHHHHHHHHHCCEEEEECC-----TTSCSE--EEEEEEECH---------HHHHHHHHHHHHHHHHHC---
T ss_pred eeeeecCCchHHHHHHHHhCCEEEEecC-----CCCCCc--cEEEEEeCH---------HHHHHHHHHHHHHHHhcccCC
Confidence 5677776 89999999999999988531 111223 345788864 47999999999999765311
Q ss_pred CCCcc-----cc---CCC--Cc--ccceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCC
Q 011603 195 FPTLQ-----TV---MGN--GV--QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQ 262 (481)
Q Consensus 195 ~pp~~-----~p---~~~--G~--k~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~ 262 (481)
...+. +. ..+ +. .....+|.||- +++|+|||++|.++|+|+++|||+|.|-.....
T Consensus 78 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~------~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~------ 145 (174)
T 1j4w_A 78 PGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQRNPPP------ 145 (174)
T ss_dssp --------------------------CEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTT------
T ss_pred CCCCCCCCCCCCCCCCccccCCCCCcEEEEEEECh------HHcCeeECCCchHHHHHHHHHCCEEEECCCCCC------
Confidence 10000 00 000 00 12356677763 469999999999999999999999999864211
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 011603 263 GEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 293 (481)
Q Consensus 263 g~Es~EPLHV~Isa~~~e~v~~Ak~LiE~LL 293 (481)
..+ ...=.|.|+| +++++++|++||+++|
T Consensus 146 ~~~-~~~~~v~I~G-~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 146 NAD-PNMKLFTIRG-TPQQIDYARQLIEEKI 174 (174)
T ss_dssp TSC-TTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred CCC-CCceEEEEEC-CHHHHHHHHHHHHHhC
Confidence 111 1224578888 8999999999999985
No 8
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.09 E-value=2.5e-10 Score=103.17 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=106.9
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeee--cceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITR--GKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHA 180 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTR--GrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~A 180 (481)
+..+|.|..- .++..+.| |+++++|+++|||.|.+. +.++|. ..++ .+.|.|.. +.|++|
T Consensus 6 ~~~~i~vp~~--~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~----~~er--~v~I~G~~---------~~v~~A 68 (178)
T 2anr_A 6 YFLKVLIPSY--AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG----TTER--VCLIQGTI---------EALNAV 68 (178)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTT----SSEE--EEEEEECH---------HHHHHH
T ss_pred EEEEEEEChh--HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCC----CCCc--eEEEEeCH---------HHHHHH
Confidence 4556666543 37788887 899999999999998873 222211 2233 46788853 479999
Q ss_pred HHHHHHHHHcCCCCCCCcc---c--c--CCCCcccceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeec
Q 011603 181 AAMVEEMLKQGHAGFPTLQ---T--V--MGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGR 253 (481)
Q Consensus 181 vaeIkEILKe~p~~~pp~~---~--p--~~~G~k~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGR 253 (481)
+.+|.+++.+.+......+ . + ..+.......+|.||- +++|+|||++|.++|.|+++|||+|.|-..
T Consensus 69 ~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~------~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~ 142 (178)
T 2anr_A 69 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPN------STAGLIIGKGGATVKAIMEQSGAWVQLSQK 142 (178)
T ss_dssp HHHHHHHHTCCCCC-----------------CGGGGEEEEEEEH------HHHHHHHCGGGHHHHHHHHHSSCEEEECCC
T ss_pred HHHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEeCC
Confidence 9999999987643211000 0 0 0001123456777873 478999999999999999999999999753
Q ss_pred CCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 011603 254 GSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 294 (481)
Q Consensus 254 GSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~LiE~LL~ 294 (481)
... .. ...=.|.|+|. ++++++|++|++++|.
T Consensus 143 ~~~-------~~-~~~~~v~I~G~-~~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 143 PDG-------IN-LQNRVVTVSGE-PEQNRKAVELIIQKIQ 174 (178)
T ss_dssp C------------CCEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred CCC-------CC-CCceEEEEEcC-HHHHHHHHHHHHHHHH
Confidence 211 01 12246777776 5899999999999875
No 9
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.88 E-value=4.3e-09 Score=85.94 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=59.1
Q ss_pred cceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011603 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (481)
Q Consensus 208 ~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~ 287 (481)
....+|.||-+ ++|+|||++|.++|.|+++|||+|.|...|+. ....+-+|.|++ +++.+++|++
T Consensus 13 ~~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--------~~~~er~v~I~G-~~~~v~~A~~ 77 (85)
T 2opv_A 13 GTVQEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--------NTNVDKPLRIIG-DPYKVQQACE 77 (85)
T ss_dssp SEEEEEEECTT------THHHHHTTTTHHHHHHHHHHTCEEEECSSSCS--------STTSCEEEEEEE-CHHHHHHHHH
T ss_pred CEEEEEEeChh------heeeeECCCCHHHHHHHHHHCCEEEEcCCCCC--------CCCCceEEEEEe-CHHHHHHHHH
Confidence 34577888743 69999999999999999999999999875542 112346799999 9999999999
Q ss_pred HHHHHHH
Q 011603 288 LAENLLD 294 (481)
Q Consensus 288 LiE~LL~ 294 (481)
+|++|+.
T Consensus 78 ~I~~i~~ 84 (85)
T 2opv_A 78 MVMDILR 84 (85)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999974
No 10
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.69 E-value=2.1e-08 Score=81.32 Aligned_cols=74 Identities=24% Similarity=0.344 Sum_probs=59.1
Q ss_pred cceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011603 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (481)
Q Consensus 208 ~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~ 287 (481)
....+|.||-+ ++|.|||++|.++|+|+++|||+|.|... . .....-.|.|++ +++++++|++
T Consensus 6 ~~~~~i~Vp~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~---~~~~~~~v~I~G-~~~~v~~A~~ 68 (82)
T 1zzk_A 6 IITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEP-------L---EGSEDRIITITG-TQDQIQNAQY 68 (82)
T ss_dssp CEEEEEEEETT------TGGGGTCGGGHHHHHHHHHHCCEEEECCT-------T---SCSSEEEEEEEE-CHHHHHHHHH
T ss_pred eEEEEEEEChH------hcCeeECCCchHHHHHHHHHCCEEEEcCC-------C---CCCCceEEEEEe-CHHHHHHHHH
Confidence 35667888854 68999999999999999999999999642 0 112235789999 6999999999
Q ss_pred HHHHHHHHHHH
Q 011603 288 LAENLLDTISA 298 (481)
Q Consensus 288 LiE~LL~tV~e 298 (481)
||++++.....
T Consensus 69 ~I~~~i~~~~g 79 (82)
T 1zzk_A 69 LLQNSVKQYSG 79 (82)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHhccC
Confidence 99999876543
No 11
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.69 E-value=1.7e-08 Score=84.05 Aligned_cols=73 Identities=15% Similarity=0.286 Sum_probs=59.5
Q ss_pred ccceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 011603 207 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAK 286 (481)
Q Consensus 207 k~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak 286 (481)
.....+|.||-+ ++|+|||++|.++|+|+++|||+|.|...+... ....-.|.|++ +++++++|+
T Consensus 13 ~~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------~~~~r~v~I~G-~~~~v~~A~ 77 (94)
T 1x4m_A 13 GNAVQEIMIPAS------KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN--------TGADKPLRITG-DPYKVQQAK 77 (94)
T ss_dssp CCEEEEEEECHH------HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS--------SCSCEEEEEEE-CTTTHHHHH
T ss_pred CcEEEEEEEChh------hcceEECCCCHHHHHHHHHHCCeEEecCCCCCC--------CCCceEEEEEe-CHHHHHHHH
Confidence 345677888744 799999999999999999999999998644321 12346789999 999999999
Q ss_pred HHHHHHHH
Q 011603 287 RLAENLLD 294 (481)
Q Consensus 287 ~LiE~LL~ 294 (481)
+||++||.
T Consensus 78 ~~I~~~i~ 85 (94)
T 1x4m_A 78 EMVLELIR 85 (94)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99999985
No 12
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.63 E-value=2.8e-08 Score=82.49 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=58.7
Q ss_pred cceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011603 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (481)
Q Consensus 208 ~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~ 287 (481)
....+|.||.+ ++|+|||++|.++|+|+++|||+|.|..... ....-.|.|++. ++++++|++
T Consensus 14 ~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~----------g~~~r~v~I~G~-~e~v~~A~~ 76 (92)
T 1x4n_A 14 VMTEEYKVPDG------MVGFIIGRGGEQISRIQQESGCKIQIAPDSG----------GLPERSCMLTGT-PESVQSAKR 76 (92)
T ss_dssp CEEEEEEEEHH------HHHHHHCSSSHHHHHHHHHSCCEEEECSCCT----------TCSEEEEEEEEC-HHHHHHHHH
T ss_pred CEEEEEEEChH------HcceeECCCchHHHHHHHHhCCEEEEcCCCC----------CCCccEEEEEeC-HHHHHHHHH
Confidence 35677888854 7999999999999999999999999986321 123357888886 999999999
Q ss_pred HHHHHHHHH
Q 011603 288 LAENLLDTI 296 (481)
Q Consensus 288 LiE~LL~tV 296 (481)
||+++|...
T Consensus 77 ~I~~~i~~~ 85 (92)
T 1x4n_A 77 LLDQIVEKG 85 (92)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998754
No 13
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.62 E-value=4.2e-08 Score=77.83 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=55.5
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 011603 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (481)
Q Consensus 210 eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~Li 289 (481)
..++.||-+ ++|+|||++|.++|.|+++|||+|.|...+... .....-.|.|+|. ++++++|++||
T Consensus 4 ~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~-------~~~~~~~v~I~G~-~~~v~~A~~~I 69 (76)
T 1dtj_A 4 LVEMAVPEN------LVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------PGTRNRRVTITGS-PAATQAAQYLI 69 (76)
T ss_dssp EEEEEEETT------THHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS-------TTCCEEEEEEEES-HHHHHHHHHHH
T ss_pred EEEEEEChH------HcceEECCCchHHHHHHHHhCCEEEECcCCCCC-------CCCceeEEEEEeC-HHHHHHHHHHH
Confidence 356777743 689999999999999999999999998643211 1123457888886 99999999999
Q ss_pred HHHHH
Q 011603 290 ENLLD 294 (481)
Q Consensus 290 E~LL~ 294 (481)
+++|.
T Consensus 70 ~~~i~ 74 (76)
T 1dtj_A 70 SQRVT 74 (76)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 99874
No 14
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.60 E-value=4.9e-08 Score=83.68 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=56.3
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 011603 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (481)
Q Consensus 210 eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~Li 289 (481)
..+|.||-+ ++++|||++|+++|+|+++|||+|.|.-.. ....+-.|.|++. ++++++|++||
T Consensus 12 ~~~i~Ip~~------~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~----------~~~~er~V~I~G~-~e~v~~A~~~I 74 (106)
T 2hh3_A 12 GIDVPVPRH------SVGVVIGRSGEMIKKIQNDAGVRIQFKQDD----------GTGPEKIAHIMGP-PDRCEHAARII 74 (106)
T ss_dssp CEEEEEETT------THHHHHTTTTHHHHHHHHHHTCEEEECSSC----------SSSSEEEEEEESS-HHHHHHHHHHH
T ss_pred EEEEEECHH------HcCccCCCCcHHHHHHHHHHCcEEEEecCC----------CCCceeEEEEEeC-HHHHHHHHHHH
Confidence 467778744 589999999999999999999999997421 1122357888886 99999999999
Q ss_pred HHHHHHH
Q 011603 290 ENLLDTI 296 (481)
Q Consensus 290 E~LL~tV 296 (481)
++||...
T Consensus 75 ~~ii~~~ 81 (106)
T 2hh3_A 75 NDLLQSL 81 (106)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9998754
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.59 E-value=2.4e-08 Score=95.61 Aligned_cols=148 Identities=21% Similarity=0.222 Sum_probs=97.9
Q ss_pred EEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHH
Q 011603 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 184 (481)
Q Consensus 106 aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~AvaeI 184 (481)
..|.|+.-. .++.+.+ |.++..|+++||+.|..-- .+... .|.+.+.+.| . .++++|+++|
T Consensus 36 ~~i~IP~~k--ig~lIG~gGk~Ik~I~e~tgvkI~I~~----------~~g~V--~I~~~~~t~d-~---~~i~kA~~~I 97 (219)
T 2e3u_A 36 EYVKIPKDR--IAVLIGKKGQTKKEIEKRTKTKITIDS----------ETGEV--WITSTKETED-P---LAVWKARDIV 97 (219)
T ss_dssp EEEECCHHH--HHHHHCGGGHHHHHHHHHHTEEEEECT----------TTCEE--EEEECTTCCS-H---HHHHHHHHHH
T ss_pred EEEEeCHHH--hhhhhcccHHHHHHHHHHHCcEEEEEc----------CCCEE--EEecCCCCCC-H---HHHHHHHHHH
Confidence 467777655 8888887 8999999999999987631 13333 4555432111 1 4899999999
Q ss_pred HHHHHcCCCCCCCcc--ccCCCCcccceeEEEecC---CCCCCC--ceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCC
Q 011603 185 EEMLKQGHAGFPTLQ--TVMGNGVQAMSTSVFLGF---DADASL--NIAARIRGPNDQYINHIMNETGATVLLRGRGSGN 257 (481)
Q Consensus 185 kEILKe~p~~~pp~~--~p~~~G~k~~eeKI~Ipl---e~~P~F--N~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~ 257 (481)
+.++... .++.. .-.+ . ..-+.+.|+- ..-|++ ..+|+|||++|.|+|.||+.|||+|+|-|+
T Consensus 98 ~~i~rg~---~~e~g~~ll~d-d--~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~~---- 167 (219)
T 2e3u_A 98 LAIGRGF---SPERAFRLLNE-G--EYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGK---- 167 (219)
T ss_dssp HHHHTTC---CHHHHGGGGST-T--CEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEETT----
T ss_pred HHHhccC---CccccceeccC-C--ccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECCe----
Confidence 9987421 00000 0000 0 1122333331 112222 258999999999999999999999999641
Q ss_pred CCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 011603 258 SEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 295 (481)
Q Consensus 258 ~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~LiE~LL~t 295 (481)
.|+|.| ++++++.|++++++||+.
T Consensus 168 -------------~v~i~G-~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 168 -------------TVAIIG-NPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp -------------EEEEEE-CHHHHHHHHHHHHHHHTT
T ss_pred -------------EEEEEe-CHHHHHHHHHHHHHHHcC
Confidence 377777 788999999999999964
No 16
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.59 E-value=2.9e-08 Score=81.79 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=58.7
Q ss_pred cceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011603 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (481)
Q Consensus 208 ~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~ 287 (481)
....+|.||.+ ++|+|||++|.++|+|+++|||+|.|... .. + ...-.|.|++. ++++++|++
T Consensus 13 ~~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-------~~--~-~~~~~v~I~G~-~e~v~~A~~ 75 (89)
T 1j5k_A 13 IITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEP-------LE--G-SEDRIITITGT-QDQIQNAQY 75 (89)
T ss_dssp EEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHTCCEEEECSC-------CS--S-SSEEEEEEEEE-HHHHHHHHH
T ss_pred eEEEEEEEChh------hcceeECCCCHhHHHHHHHhCCeEEecCC-------CC--C-CCccEEEEEcC-HHHHHHHHH
Confidence 45677888854 79999999999999999999999999641 00 1 12356888887 999999999
Q ss_pred HHHHHHHHHHHh
Q 011603 288 LAENLLDTISAE 299 (481)
Q Consensus 288 LiE~LL~tV~eE 299 (481)
||+++|......
T Consensus 76 ~I~~~i~e~~g~ 87 (89)
T 1j5k_A 76 LLQNSVKQYSGK 87 (89)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHhhhcC
Confidence 999998765433
No 17
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.57 E-value=6.1e-08 Score=82.71 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=56.5
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 011603 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (481)
Q Consensus 210 eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~Li 289 (481)
..+|.||-+ ++|+|||++|.++|.|+++|||+|.|.....- ......-.|.|++ +.+++++|++||
T Consensus 8 ~~~i~IP~~------~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~-------~~~~~~r~V~I~G-~~e~v~~A~~~I 73 (107)
T 2hh2_A 8 EMTFSIPTH------KCGLVIGRGGENVKAINQQTGAFVEISRQLPP-------NGDPNFKLFIIRG-SPQQIDHAKQLI 73 (107)
T ss_dssp CEEEEEEGG------GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT-------TCCTTEEEEEEES-CHHHHHHHHHHH
T ss_pred eEEEEECHH------HcCccCCCCcHHHHHHHHHhCCEEEEcCccCC-------CCCCCceEEEEEC-CHHHHHHHHHHH
Confidence 467888744 68999999999999999999999999753211 0111235677888 999999999999
Q ss_pred HHHHHH
Q 011603 290 ENLLDT 295 (481)
Q Consensus 290 E~LL~t 295 (481)
+++|..
T Consensus 74 ~~~i~e 79 (107)
T 2hh2_A 74 EEKIEG 79 (107)
T ss_dssp HHHSCS
T ss_pred HHHHhc
Confidence 999854
No 18
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.56 E-value=7.1e-08 Score=80.99 Aligned_cols=77 Identities=27% Similarity=0.357 Sum_probs=62.5
Q ss_pred cceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011603 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (481)
Q Consensus 208 ~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~ 287 (481)
.....+.||-+ ++|+|||++|.++|.|+++|||+|.|-..|+ ..+-.|.|+|. ++++++|++
T Consensus 16 ~vt~~i~Ip~~------~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~-----------~~~~~V~I~G~-~e~v~~A~~ 77 (95)
T 2ctm_A 16 MVSEDVPLDHR------VHARIIGARGKAIRKIMDEFKVDIRFPQSGA-----------PDPNCVTVTGL-PENVEEAID 77 (95)
T ss_dssp CCCEEEECCTT------THHHHHCSSSCHHHHHHHHHTCEEECCCTTC-----------SCTTEEEEESC-HHHHHHHHH
T ss_pred cEEEEEEECHH------HccccCCCCcchHHHHHHHHCCeEEecCCCC-----------CCCcEEEEEcC-HHHHHHHHH
Confidence 34577778744 5899999999999999999999999965432 12457999998 699999999
Q ss_pred HHHHHHHHHHHhhhc
Q 011603 288 LAENLLDTISAECGA 302 (481)
Q Consensus 288 LiE~LL~tV~eE~~~ 302 (481)
+|++|+....+++..
T Consensus 78 ~I~~i~~e~~~~~~~ 92 (95)
T 2ctm_A 78 HILNLEEEYLADSGP 92 (95)
T ss_dssp HHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999887776654
No 19
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.55 E-value=5e-08 Score=81.33 Aligned_cols=71 Identities=10% Similarity=0.118 Sum_probs=58.0
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011603 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (481)
Q Consensus 209 ~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~L 288 (481)
....|.||-+ ++|.|||++|.++|.|+++|||+|.|-..+ ++.-.|.|+|. ++.+++|+++
T Consensus 17 ~t~~i~Ip~~------~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~------------~~~~~V~I~G~-~e~v~~A~~~ 77 (94)
T 2cte_A 17 ASATVAIPKE------HHRFVIGKNGEKLQDLELKTATKIQIPRPD------------DPSNQIKITGT-KEGIEKARHE 77 (94)
T ss_dssp EEEEEECCTT------THHHHHCSSSCHHHHHHHHTTCCCBCCCTT------------SSCCEEEEEEC-HHHHHHHHHH
T ss_pred eEEEEEEChH------HeeeeECCCChhHHHHHHHHCCEEEeCCCC------------CCCCeEEEEEC-HHHHHHHHHH
Confidence 4567778744 589999999999999999999999995321 12248999998 9999999999
Q ss_pred HHHHHHHHHH
Q 011603 289 AENLLDTISA 298 (481)
Q Consensus 289 iE~LL~tV~e 298 (481)
|++|+.....
T Consensus 78 I~~i~~~~~~ 87 (94)
T 2cte_A 78 VLLISAEQDK 87 (94)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHhhcccc
Confidence 9999876543
No 20
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.53 E-value=8.5e-08 Score=78.42 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=58.2
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 011603 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (481)
Q Consensus 210 eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~Li 289 (481)
..+|.||-+ .+|+|||++|.++|.|+++|||+|.|...+... .....-.|.|+|. ++.+++|++||
T Consensus 4 t~~i~IP~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-------~g~~~r~v~I~G~-~~~v~~A~~~I 69 (87)
T 1ec6_A 4 LVEIAVPEN------LVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------PGTRNRRVTITGS-PAATQAAQYLI 69 (87)
T ss_dssp EEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS-------TTSCEEEEEEESS-HHHHHHHHHHH
T ss_pred EEEEEEChH------HcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC-------CCCCceEEEEEcC-HHHHHHHHHHH
Confidence 356777743 689999999999999999999999997532111 0122357888886 99999999999
Q ss_pred HHHHHHHHHh
Q 011603 290 ENLLDTISAE 299 (481)
Q Consensus 290 E~LL~tV~eE 299 (481)
+++|......
T Consensus 70 ~~~i~~~~~~ 79 (87)
T 1ec6_A 70 SQRVTYEQGV 79 (87)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhccccc
Confidence 9999765443
No 21
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.52 E-value=1.5e-07 Score=79.13 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=60.6
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011603 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (481)
Q Consensus 209 ~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~L 288 (481)
+..+|.||-+ ++++|||++|.++|.|+++|||+|.|--.|.. ....-.|.|+|. .+.+++|+++
T Consensus 17 ~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~---------~~~~~~V~I~G~-~e~v~~A~~~ 80 (97)
T 2ctl_A 17 FKLSVTVDPK------YHPKIIGRKGAVITQIRLEHDVNIQFPDKDDG---------NQPQDQITITGY-EKNTEAARDA 80 (97)
T ss_dssp CEEEEECCTT------THHHHSCSSSCHHHHHHHHHTCEEECCCTTTC---------SSCSSEEEEESC-HHHHHHHHHH
T ss_pred eeEEEEECHH------HhhhcCCCCchhHHHHHHHHCCEEEecCCCCC---------CCCccEEEEEeC-HHHHHHHHHH
Confidence 4567777733 58999999999999999999999999654321 123357999997 9999999999
Q ss_pred HHHHHHHHHHhh
Q 011603 289 AENLLDTISAEC 300 (481)
Q Consensus 289 iE~LL~tV~eE~ 300 (481)
|++|+..+.++.
T Consensus 81 I~~iv~e~e~~~ 92 (97)
T 2ctl_A 81 ILRIVGELEQMS 92 (97)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhh
Confidence 999998766543
No 22
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.50 E-value=1.3e-07 Score=80.12 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=57.4
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011603 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (481)
Q Consensus 209 ~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~L 288 (481)
...+|.||.+ ++|+|||++|.++|.|+++|||+|.|-....+. ..+.-.|.|+|.+. .+++|++|
T Consensus 15 ~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------~~~~~~V~I~G~~~-~v~~A~~~ 79 (104)
T 1we8_A 15 VFEQLSVPQR------SVGRIIGRGGETIRSICKASGAKITCDKESEGT--------LLLSRLIKISGTQK-EVAAAKHL 79 (104)
T ss_dssp EEEEEEEETT------THHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS--------SSSEEEEEEEEEHH-HHHHHHHH
T ss_pred EEEEEEEChh------heeeeECCCCHHHHHHHHHHCCEEEEecCCCCC--------CCCcceEEEEcCHH-HHHHHHHH
Confidence 4577888844 699999999999999999999999997643211 12346788998666 79999999
Q ss_pred HHHHHHH
Q 011603 289 AENLLDT 295 (481)
Q Consensus 289 iE~LL~t 295 (481)
|+++|..
T Consensus 80 I~~~i~e 86 (104)
T 1we8_A 80 ILEKVSE 86 (104)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999865
No 23
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.48 E-value=8.9e-08 Score=77.50 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=55.8
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011603 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (481)
Q Consensus 209 ~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~L 288 (481)
...+|.||-+ ++|.|||++|.++|+|+++|||+|.|.... +....-.|.|+|. ++++++|++|
T Consensus 6 ~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~----------~~~~~r~v~I~G~-~~~v~~A~~~ 68 (82)
T 1wvn_A 6 TTHELTIPNN------LIGCIIGRQGANINEIRQMSGAQIKIANPV----------EGSSGRQVTITGS-AASISLAQYL 68 (82)
T ss_dssp EEEEEEEEGG------GHHHHHCGGGHHHHHHHHHHCCEEEECCCC----------TTCSEEEEEEEEC-HHHHHHHHHH
T ss_pred EEEEEEEchH------hccceeCCCchhHHHHHHHhCCEEEEecCC----------CCCCceEEEEEcC-HHHHHHHHHH
Confidence 4567888744 689999999999999999999999997521 1123457888885 5999999999
Q ss_pred HHHHHHH
Q 011603 289 AENLLDT 295 (481)
Q Consensus 289 iE~LL~t 295 (481)
|+++|..
T Consensus 69 I~~~i~~ 75 (82)
T 1wvn_A 69 INARLSS 75 (82)
T ss_dssp HHHHTC-
T ss_pred HHHHHHh
Confidence 9999864
No 24
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.47 E-value=8.6e-08 Score=76.44 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=56.0
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011603 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (481)
Q Consensus 209 ~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~L 288 (481)
...+|.||-+ ++|.|||++|.++|+|+++|||+|.|... . +....-.|.|+|. ++++++|++|
T Consensus 5 ~~~~i~Ip~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~----~------~~~~~~~v~I~G~-~~~v~~A~~~ 67 (76)
T 2p2r_A 5 TSHELTIPND------LIGCIIGRQGAKINEIRQMSGAQIKIANP----V------EGSTDRQVTITGS-AASISLAQYL 67 (76)
T ss_dssp EEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCC----C------TTCSEEEEEEEEC-HHHHHHHHHH
T ss_pred eEEEEEEChH------HcceEECCCChHHHHHHHHHCCEEEEcCC----C------CCCCeEEEEEEeC-HHHHHHHHHH
Confidence 4567777743 69999999999999999999999999752 1 1123467889986 9999999999
Q ss_pred HHHHHH
Q 011603 289 AENLLD 294 (481)
Q Consensus 289 iE~LL~ 294 (481)
|+++|.
T Consensus 68 I~~~i~ 73 (76)
T 2p2r_A 68 INVRLS 73 (76)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999874
No 25
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=1.1e-07 Score=78.40 Aligned_cols=65 Identities=18% Similarity=0.386 Sum_probs=51.4
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011603 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (481)
Q Consensus 209 ~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~L 288 (481)
...+|.||- +++|.|||++|+++|.|+++|||+|+|-.++ +|+ .+.|++. ++++++|+++
T Consensus 10 ~~~~i~VP~------~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------------~~~-~v~ItG~-~e~v~~A~~~ 69 (83)
T 2dgr_A 10 TTIQVRVPY------RVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------------KEP-VFAVTGM-PENVDRAREE 69 (83)
T ss_dssp EEEEEECCH------HHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------------SCC-EEEEEEC-TTTHHHHHHH
T ss_pred eEEEEEeCh------HHeeeeECCCchHHHHHHHHhCCeEEecCCC------------CCC-eEEEEcC-HHHHHHHHHH
Confidence 456677763 6899999999999999999999999996421 132 3666665 5999999999
Q ss_pred HHHHH
Q 011603 289 AENLL 293 (481)
Q Consensus 289 iE~LL 293 (481)
|++++
T Consensus 70 I~~~i 74 (83)
T 2dgr_A 70 IEAHI 74 (83)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 26
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.42 E-value=1.6e-07 Score=80.11 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=61.4
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011603 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (481)
Q Consensus 209 ~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~L 288 (481)
..+.|.||-+ ++|+|||++|.++|.|+++|||+|.|--.|+ ++-.|.|+|.+ +.+++|+++
T Consensus 17 ~~~~i~Ip~~------~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~------------~~~~V~I~G~~-e~v~~A~~~ 77 (104)
T 2ctk_A 17 VTIEVEVPFD------LHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL------------QSDIIAITGLA-ANLDRAKAG 77 (104)
T ss_dssp EEEEEECCHH------HHHHHHCSSSHHHHHHHHHTCCEEECCCTTT------------TCCEEEEEECH-HHHHHHHHH
T ss_pred EEEEEEEChH------HccceeCCCchHHHHHHHHHCCEEEecCCCC------------CcceEEEEcCH-HHHHHHHHH
Confidence 4566777643 6899999999999999999999999964332 12389999985 999999999
Q ss_pred HHHHHHHHHHhhhc
Q 011603 289 AENLLDTISAECGA 302 (481)
Q Consensus 289 iE~LL~tV~eE~~~ 302 (481)
|++|+.....+...
T Consensus 78 I~~i~~e~e~~~~d 91 (104)
T 2ctk_A 78 LLERVKELQAEQED 91 (104)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhHHH
Confidence 99999988877643
No 27
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.40 E-value=2.3e-07 Score=73.67 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=52.8
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 011603 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (481)
Q Consensus 210 eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~Li 289 (481)
...+.||-+ ++|.|||++|.++++|+++|||+|.|--.|. .+-.|.|+|. .+.+++|++++
T Consensus 6 ~~~i~I~~~------~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~------------~~~~V~I~G~-~~~v~~A~~~I 66 (71)
T 1vig_A 6 YVEINIDHK------FHRHLIGKSGANINRIKDQYKVSVRIPPDSE------------KSNLIRIEGD-PQGVQQAKREL 66 (71)
T ss_dssp EEEEEECSS------HHHHHTCSSCCHHHHHHHHTCCEEECCCCCS------------SSEEEEEEES-SHHHHHHHHHH
T ss_pred EEEEEECHH------HhhhhcCCCCccHHHHHHHHCCEEEECCCCC------------cccEEEEEcC-HHHHHHHHHHH
Confidence 456667633 6899999999999999999999999864321 2247999998 68999999999
Q ss_pred HHHH
Q 011603 290 ENLL 293 (481)
Q Consensus 290 E~LL 293 (481)
++|+
T Consensus 67 ~~i~ 70 (71)
T 1vig_A 67 LELA 70 (71)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 9885
No 28
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.33 E-value=2.9e-07 Score=73.34 Aligned_cols=67 Identities=12% Similarity=0.187 Sum_probs=54.5
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011603 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (481)
Q Consensus 209 ~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~L 288 (481)
...++.||- +.+|.|||++|.++|+|+++|||+|.|-..| ...-.|.|+|. ++.+++|+++
T Consensus 5 ~~~~i~ip~------~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~------------~~er~v~I~G~-~~~v~~A~~~ 65 (73)
T 2axy_A 5 LTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGN------------CPERIITLAGP-TNAIFKAFAM 65 (73)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSC------------CSEEEEEEEEC-HHHHHHHHHH
T ss_pred EEEEEEECh------hHeeeEECCCCHHHHHHHHHHCCEEEEecCC------------CCcEEEEEEeC-HHHHHHHHHH
Confidence 345677763 3699999999999999999999999997531 11235888888 9999999999
Q ss_pred HHHHHH
Q 011603 289 AENLLD 294 (481)
Q Consensus 289 iE~LL~ 294 (481)
|+++|.
T Consensus 66 I~~~l~ 71 (73)
T 2axy_A 66 IIDKLE 71 (73)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999885
No 29
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.27 E-value=4e-07 Score=85.72 Aligned_cols=145 Identities=14% Similarity=0.094 Sum_probs=94.0
Q ss_pred EEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHH
Q 011603 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185 (481)
Q Consensus 107 EIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~AvaeIk 185 (481)
.|.|.+-. +-+++.+ |++...|++.+|+.|.... .++.. -|.....+.|. ..+.+|.+.|+
T Consensus 7 ~i~VP~~r--vg~liGk~g~~~k~i~e~~g~~i~id~----------~~~~V--~i~t~~~t~dp----~~i~KA~dlI~ 68 (191)
T 1tua_A 7 YVKVKPER--LGAVIGPRGEVKAEIMRRTGTVITVDT----------ENSMV--IVEPEAEGIPP----VNLMKAAEVVK 68 (191)
T ss_dssp EEECCGGG--HHHHHCGGGHHHHHHHHHHTEEEEEET----------TTTEE--EEEESSTTSCH----HHHHHHHHHHH
T ss_pred EEECCHHH--hhHHHhcCHhHHHHHHHHHCcEEEEEc----------CCCeE--EEEeCCCCCCH----HHHHHHHHHHH
Confidence 45555544 5566666 8999999999999987743 23333 33322111221 37889999998
Q ss_pred HHHHcCCCCCCCcc-cc-CCCCcccceeEEEecCCCC-CC-----CceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCC
Q 011603 186 EMLKQGHAGFPTLQ-TV-MGNGVQAMSTSVFLGFDAD-AS-----LNIAARIRGPNDQYINHIMNETGATVLLRGRGSGN 257 (481)
Q Consensus 186 EILKe~p~~~pp~~-~p-~~~G~k~~eeKI~Iple~~-P~-----FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~ 257 (481)
.+...-+ +.+ .. .+.. ..-+.+.|+ .+ .. -..+|+|||++|.|+|.||..|||+|.|-|+
T Consensus 69 ai~rgf~----~e~A~~Ll~Dd--~~~e~i~i~--~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~---- 136 (191)
T 1tua_A 69 AISLGFP----PEKAFRLLEED--QILVVVDLK--QVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEY---- 136 (191)
T ss_dssp HHHHTCC----HHHHGGGGSTT--EEEEEEETH--HHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSS----
T ss_pred HHHcCCC----HHHhhhcccCc--ceeEEEEcc--cccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcCC----
Confidence 8775321 100 00 0000 112233232 11 10 1258999999999999999999999999752
Q ss_pred CCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 011603 258 SEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 295 (481)
Q Consensus 258 ~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~LiE~LL~t 295 (481)
.++|.| +++.++.|+..+++||..
T Consensus 137 -------------~v~i~G-~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 137 -------------EVAIIG-DYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp -------------EEEEEE-EHHHHHHHHHHHHHHHTT
T ss_pred -------------EEEEEe-ChHHHHHHHHHHHHHHcC
Confidence 577777 789999999999999964
No 30
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.21 E-value=3e-06 Score=75.57 Aligned_cols=137 Identities=15% Similarity=0.279 Sum_probs=92.1
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Ava 182 (481)
|+.++.|..=+ +...+.+ |+++..|++++|..|. .|- +++-.| .+.+.+ + ..|.++
T Consensus 4 ~~~~~~Vp~~~--vG~~IG~~G~~I~~i~~e~gI~ii---~~~-------~~~~~~-i~~~~~--p------~~v~~~-- 60 (144)
T 2qnd_A 4 FHEQFIVREDL--MGLAIGTHGANIQQARKVPGVTAI---DLD-------EDTCTF-HIYGED--Q------DAVKKA-- 60 (144)
T ss_dssp CEEEEECCGGG--HHHHHCGGGHHHHHHHTSTTEEEE---EEE-------TTTTEE-EEEESS--H------HHHHHH--
T ss_pred eEEEEEECCcc--eeeEECCChhHHHHHHHHHCCeEe---ccC-------CCchhe-eeccCC--H------HHHHHH--
Confidence 56777777666 7888886 9999999999993332 121 123334 455654 2 245443
Q ss_pred HHHHHHHcCCCCCCCccccCCCCcccceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCc-EEEEeecCCCCCCCC
Q 011603 183 MVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGA-TVLLRGRGSGNSEGL 261 (481)
Q Consensus 183 eIkEILKe~p~~~pp~~~p~~~G~k~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGa-KI~IRGRGSg~~E~~ 261 (481)
+++|.- .+..|.||-+ .+|++||.+|.++|.|+++||| +|.|.+.....
T Consensus 61 --~~~l~~------------------~e~~v~Vp~~------~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~---- 110 (144)
T 2qnd_A 61 --RSFLEF------------------AEDVIQVPRN------LVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN---- 110 (144)
T ss_dssp --HHHHCE------------------EEEEEEEEGG------GHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC----
T ss_pred --HHhhhc------------------ceEEEEECHH------HcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC----
Confidence 333321 1256777632 6899999999999999999997 99999753221
Q ss_pred CCCCCCCCc-EEEEEeCCHHHHHHHHHHHHHHHHHH
Q 011603 262 QGEEVHQPL-HLFLSSNNPKSLEEAKRLAENLLDTI 296 (481)
Q Consensus 262 ~g~Es~EPL-HV~Isa~~~e~v~~Ak~LiE~LL~tV 296 (481)
...++.+ -|.|+| +.+++++|++|++++|+.+
T Consensus 111 --~~~~~~~~~vtI~G-~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 111 --VPQEEGMVPFVFVG-TKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp --CCCCTTEEEEEEEE-EHHHHHHHHHHHHHHHHTC
T ss_pred --ccccCCeeEEEEEe-CHHHHHHHHHHHHHHHHhc
Confidence 1112333 255665 8889999999999999753
No 31
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.04 E-value=3.1e-06 Score=71.30 Aligned_cols=69 Identities=19% Similarity=0.274 Sum_probs=56.2
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhh-CcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011603 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNET-GATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (481)
Q Consensus 209 ~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ET-GaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~ 287 (481)
.++.|.||-+ +.+.||||+|.+++.|+++| ||+|.|--.|+ ..-.|.|.|.+. .+++|++
T Consensus 17 vt~~i~Ip~~------~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~------------~~~~V~I~G~~~-~v~~A~~ 77 (95)
T 2ctj_A 17 AEVEVSIPAK------LHNSLIGTKGRLIRSIMEECGGVHIHFPVEGS------------GSDTVVIRGPSS-DVEKAKK 77 (95)
T ss_dssp CCEEEECCHH------HHHHHHCSSSHHHHHHHHHHTSCEEECCCTTT------------TCCEEEEESCHH-HHHHHHH
T ss_pred EEEEEEECHH------HHhhhCCCCchhHHHHHHHcCCCEEEeCCCCC------------CcceEEEEcCHH-HHHHHHH
Confidence 4567777744 57899999999999999999 99998854332 234799999988 9999999
Q ss_pred HHHHHHHHH
Q 011603 288 LAENLLDTI 296 (481)
Q Consensus 288 LiE~LL~tV 296 (481)
+|++|+..+
T Consensus 78 ~I~~iv~e~ 86 (95)
T 2ctj_A 78 QLLHLAEEK 86 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999998654
No 32
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.02 E-value=8e-06 Score=72.13 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=54.0
Q ss_pred eEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 011603 211 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 290 (481)
Q Consensus 211 eKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~LiE 290 (481)
.++.||-+ .+|.|||++|.++|+|+++|||+|.|--.+.. ....+-.|.|+| +++.+++|+.+|.
T Consensus 4 ~~~~Vp~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~--------~~~~~r~v~I~G-~~~~v~~A~~~I~ 68 (164)
T 2jvz_A 4 QEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--------NTNVDKPLRIIG-DPYKVQQACEMVM 68 (164)
T ss_dssp EEEEECTT------CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS--------SSSSCEEEEEEE-CHHHHHHHHHHHH
T ss_pred EEEEechh------heeEEECCChHHHHHHHHHhCCeEEEecCCCC--------CCCCceEEEEEc-CHHHHHHHHHHHH
Confidence 46777643 59999999999999999999999998532210 112234688888 8899999999999
Q ss_pred HHHHH
Q 011603 291 NLLDT 295 (481)
Q Consensus 291 ~LL~t 295 (481)
+++..
T Consensus 69 ~ii~e 73 (164)
T 2jvz_A 69 DILRE 73 (164)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 98753
No 33
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.98 E-value=4.9e-06 Score=74.93 Aligned_cols=70 Identities=16% Similarity=0.260 Sum_probs=55.0
Q ss_pred eEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 011603 211 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 290 (481)
Q Consensus 211 eKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~LiE 290 (481)
.++.||- +.+|+|||++|.++|+|+++|||+|.|... + .....-.|.|++. ++.+++|+++|+
T Consensus 5 ~~~~vp~------~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~-----~~~~~r~v~I~G~-~~~v~~A~~~I~ 67 (174)
T 1j4w_A 5 IDVPIPR------FAVGIVIGRNGEMIKKIQNDAGVRIQFKPD-----D-----GTTPERIAQITGP-PDRAQHAAEIIT 67 (174)
T ss_dssp EEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEEECC-----T-----TSCSEEEEEEEEC-HHHHHHHHHHHH
T ss_pred EEEEECh------hheeeeecCCchHHHHHHHHhCCEEEEecC-----C-----CCCCccEEEEEeC-HHHHHHHHHHHH
Confidence 4566663 369999999999999999999999999642 0 0122346788877 899999999999
Q ss_pred HHHHHHH
Q 011603 291 NLLDTIS 297 (481)
Q Consensus 291 ~LL~tV~ 297 (481)
++|....
T Consensus 68 ~~~~~~~ 74 (174)
T 1j4w_A 68 DLLRSVQ 74 (174)
T ss_dssp HHHHHHC
T ss_pred HHHHhcc
Confidence 9987653
No 34
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.85 E-value=5.4e-06 Score=70.05 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=52.2
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcE-EEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011603 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGAT-VLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (481)
Q Consensus 210 eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaK-I~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~L 288 (481)
.+.+.|+.+ .+|.+|||+|.++|.|+++|||+ |-|- ++.=.|.|.+.+.+.+++|+++
T Consensus 16 i~~i~I~~d------kIg~vIG~gGk~Ik~I~e~tGv~~IdI~---------------eddG~V~I~g~~~ea~~~A~~~ 74 (91)
T 2cpq_A 16 HEEFVVRED------LMGLAIGTHGSNIQQARKVPGVTAIELD---------------EDTGTFRIYGESADAVKKARGF 74 (91)
T ss_dssp EEEEECCHH------HHHHHHTTTTHHHHHHHTSTTEEEEEEE---------------TTTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEChH------HhhhhcCCCcHHHHHHHHHhCCeEEEEE---------------cCCCEEEEEECCHHHHHHHHHH
Confidence 455556533 59999999999999999999998 9993 1235799999999999999999
Q ss_pred HHHHH
Q 011603 289 AENLL 293 (481)
Q Consensus 289 iE~LL 293 (481)
++.+-
T Consensus 75 I~~ie 79 (91)
T 2cpq_A 75 LEFVE 79 (91)
T ss_dssp HSCCC
T ss_pred HHhhh
Confidence 98763
No 35
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.68 E-value=2.3e-05 Score=69.30 Aligned_cols=68 Identities=12% Similarity=0.184 Sum_probs=54.0
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011603 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (481)
Q Consensus 209 ~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~L 288 (481)
...++.||- +.+|.|||++|.++|+|+++|||+|.|-..| ...-.|.|+|. .+.+++|+.+
T Consensus 5 ~~~~~~vp~------~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~------------~~~r~v~I~G~-~~~v~~A~~~ 65 (160)
T 2jzx_A 5 LTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGN------------CPERIITLAGP-TNAIFKAFAM 65 (160)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCSEEEEECCT------------TTEEEEEEEEE-HHHHHHHHHH
T ss_pred EEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEcCCC------------CCceEEEEEeC-HHHHHHHHHH
Confidence 345666763 3699999999999999999999999997532 12246778886 8999999999
Q ss_pred HHHHHHH
Q 011603 289 AENLLDT 295 (481)
Q Consensus 289 iE~LL~t 295 (481)
|.+++..
T Consensus 66 I~~~i~e 72 (160)
T 2jzx_A 66 IIDKLEE 72 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888764
No 36
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.66 E-value=3.6e-05 Score=68.32 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=53.2
Q ss_pred eEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 011603 211 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 290 (481)
Q Consensus 211 eKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~LiE 290 (481)
.++.||-+ .+|.|||++|.++|+|+++|||+|.|--.+.. ....--|.|+| +++.+.+|+.+|.
T Consensus 5 ~~~~ip~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~---------~~~~r~v~I~G-~~e~v~~A~~~I~ 68 (163)
T 3krm_A 5 VQVFIPAQ------AVGAIIGKKGQHIKQLSRFASASIKIAPPETP---------DSKVRMVIITG-PPEAQFKAQGRIY 68 (163)
T ss_dssp EEEEEEGG------GHHHHHCGGGHHHHHHHHHHTCEEEECCCSST---------TCSEEEEEEEE-CHHHHHHHHHHHH
T ss_pred EEEEechh------hcceeECCCcHHHHHHHHHHCCeEEEcCCCCC---------CCCceEEEEEc-CHHHHHHHHHHHH
Confidence 45666633 68999999999999999999999999753210 12224577777 8999999999998
Q ss_pred HHHHH
Q 011603 291 NLLDT 295 (481)
Q Consensus 291 ~LL~t 295 (481)
+++..
T Consensus 69 ~~~~e 73 (163)
T 3krm_A 69 GKLKE 73 (163)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
No 37
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.66 E-value=0.00011 Score=64.56 Aligned_cols=80 Identities=21% Similarity=0.258 Sum_probs=59.4
Q ss_pred eEEEEEEcC--C-CCc--ccceeee-chhhHHHHHhhhCCeEeeecc---eeCCCCCCCCCCCeEEEEeeccchhhHHHH
Q 011603 103 IIAREIVIN--D-SES--SVRYKLT-KRHTQEEIQKCTGAVVITRGK---YRLPNAPPDGEKPLYLHISAGAHLKETAER 173 (481)
Q Consensus 103 ~~~aEIeIN--D-lpq--~~R~~LT-k~~Tq~eI~e~TGA~VtTRGr---Y~PP~~~~~gepPLYL~Ieg~tq~kdt~ER 173 (481)
++.+.|.|. + +|. ..+-+|. +|.|++.|+++|||.|..||+ |+-+......+.+||++|++.+.
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~------- 83 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP------- 83 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSH-------
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCH-------
Confidence 356667664 2 453 4556666 599999999999999999986 33222233456689999999884
Q ss_pred HHHHHHHHHHHHHHHHc
Q 011603 174 ILAVDHAAAMVEEMLKQ 190 (481)
Q Consensus 174 i~aVd~AvaeIkEILKe 190 (481)
+.+++|+++|++|+..
T Consensus 84 -e~i~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 84 -EGLAAAKKLCENLLQT 99 (119)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhc
Confidence 5899999999999864
No 38
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.65 E-value=2.9e-05 Score=69.97 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=53.1
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011603 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (481)
Q Consensus 209 ~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~L 288 (481)
...++.||-+ .+|.|||++|.++|+|+++|||+|.|.-.+-.. ....| -.|.|+|. .+.+++|+++
T Consensus 6 ~~~~i~vp~~------~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~------~~~~e-r~v~I~G~-~~~v~~A~~~ 71 (178)
T 2anr_A 6 YFLKVLIPSY------AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY------PGTTE-RVCLIQGT-IEALNAVHGF 71 (178)
T ss_dssp EEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC------TTSSE-EEEEEEEC-HHHHHHHHHH
T ss_pred EEEEEEEChh------HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC------CCCCC-ceEEEEeC-HHHHHHHHHH
Confidence 3456777743 799999999999999999999999996432111 01111 24667775 8999999999
Q ss_pred HHHHHH
Q 011603 289 AENLLD 294 (481)
Q Consensus 289 iE~LL~ 294 (481)
+.+++.
T Consensus 72 I~~~~~ 77 (178)
T 2anr_A 72 IAEKIR 77 (178)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998874
No 39
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.50 E-value=0.00014 Score=64.58 Aligned_cols=80 Identities=21% Similarity=0.296 Sum_probs=57.6
Q ss_pred EEEEEEcC--CCCccc---ceeeechhhHHHHHhhhCCeEeeecceeCC-CC--CC------CCCCCeEEEEeeccchhh
Q 011603 104 IAREIVIN--DSESSV---RYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NA--PP------DGEKPLYLHISAGAHLKE 169 (481)
Q Consensus 104 ~~aEIeIN--Dlpq~~---R~~LTk~~Tq~eI~e~TGA~VtTRGrY~PP-~~--~~------~gepPLYL~Ieg~tq~kd 169 (481)
+...|.|+ ++|.-+ |.+=.+|.|+++|+++|||.|.+||+.--. ++ .. ..+.+||++|++.+.
T Consensus 7 ~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~--- 83 (131)
T 1k1g_A 7 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM--- 83 (131)
T ss_dssp EEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH---
T ss_pred EEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH---
Confidence 45555554 455222 455568999999999999999998864211 11 11 235699999999873
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC
Q 011603 170 TAERILAVDHAAAMVEEMLKQG 191 (481)
Q Consensus 170 t~ERi~aVd~AvaeIkEILKe~ 191 (481)
+.+++|+++|+++++..
T Consensus 84 -----e~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 84 -----ENVKKAVEQIRNILKQG 100 (131)
T ss_dssp -----HHHHHHHHHHHHHHTTT
T ss_pred -----HHHHHHHHHHHHHHhcc
Confidence 57999999999999764
No 40
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.41 E-value=7.7e-05 Score=81.04 Aligned_cols=62 Identities=18% Similarity=0.298 Sum_probs=50.9
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 011603 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (481)
Q Consensus 210 eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~Li 289 (481)
-+.+-||.+ .+|.||||+|.++|.|+++|||+|.|- +.=.|.|.+.|.+.+++|+++|
T Consensus 568 ~~~~~I~~~------kI~~vIG~gG~~Ik~I~e~tg~~I~I~----------------d~G~V~I~~~~~~~~~~A~~~I 625 (630)
T 3u1k_A 568 VETVQVPLS------KRAKFVGPGGYNLKKLQAETGVTISQV----------------DEETFSVFAPTPSAMHEARDFI 625 (630)
T ss_dssp EEEEECCHH------HHHHHHCGGGHHHHHHHHHHCCEEEEC----------------SSSEEEEEESSHHHHHHHHHHT
T ss_pred EEEEEeChh------HhheeECCCChhHHHHHHHHCCEEEEc----------------CCcEEEEEeCCHHHHHHHHHHH
Confidence 345556643 488999999999999999999999874 2247999999999999999999
Q ss_pred HHHH
Q 011603 290 ENLL 293 (481)
Q Consensus 290 E~LL 293 (481)
++|+
T Consensus 626 ~~i~ 629 (630)
T 3u1k_A 626 TEIC 629 (630)
T ss_dssp TC--
T ss_pred HHHh
Confidence 9886
No 41
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.10 E-value=0.001 Score=56.54 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=56.6
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHh-hCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011603 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNE-TGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (481)
Q Consensus 209 ~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~E-TGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~ 287 (481)
...+|.||-+ |.+.|||++|+++|+|+.+ ++++|.+=. +.--|.|.|+ .+.|++|+.
T Consensus 27 ~t~~i~vp~~------~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~---------------~~~~ItI~G~-~~~V~~a~~ 84 (102)
T 2ctf_A 27 TVSSVAAPSW------LHRFIIGKKGQNLAKITQQMPKVHIEFTE---------------GEDKITLEGP-TEDVSVAQE 84 (102)
T ss_dssp EEEEEECCST------THHHHHTTTTCHHHHHHHHCSSSEEEECS---------------SSCEEEEEEC-HHHHHHHHH
T ss_pred EEEEEEeCHH------HHhhhcCCCCccHHHHHHHcCCcEEEeCC---------------CCCEEEEECC-HHHHHHHHH
Confidence 4566777633 4678999999999999996 688886642 1126999999 999999999
Q ss_pred HHHHHHHHHHHhhh
Q 011603 288 LAENLLDTISAECG 301 (481)
Q Consensus 288 LiE~LL~tV~eE~~ 301 (481)
.++.|++....+..
T Consensus 85 ~I~~~v~el~~~~~ 98 (102)
T 2ctf_A 85 QIEGMVKDLINRSG 98 (102)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhcc
Confidence 99999998887653
No 42
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.84 E-value=0.00071 Score=74.68 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=13.8
Q ss_pred eeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011603 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASR 304 (481)
Q Consensus 225 ~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~LiE~LL~tV~eE~~~~r 304 (481)
.++.||||+|.++|.|++|||++|-|. |.-.|.|.+.+.+.+++|+++++.|+.....
T Consensus 580 ki~~vig~gg~~i~~i~~~tg~~idi~----------------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~v------ 637 (726)
T 4aid_A 580 KIREVIGSGGKVIREIVATTGAKVDIN----------------DDGVVKVSASDGAKIKAAIDWIKSITDEAEV------ 637 (726)
T ss_dssp --------------------------------------------------CCSCHHHHHHHHHC----------------
T ss_pred HHHhhcCCCchhHHHHHHHHCCceeEE----------------CCceEEEEeCCHHHHHHHHHHHHHHhhhhcC------
Confidence 488999999999999999999999753 3356889999999999999999999863321
Q ss_pred cccccccccCCCchhhccCcccccccccCCcccchhhcccccc
Q 011603 305 VSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNL 347 (481)
Q Consensus 305 ~~~~~~y~~~pppq~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 347 (481)
...|. --+.++..+|..-.+.. ..-||.|--++
T Consensus 638 ---G~v~~------G~V~~I~~fGaFVel~~-g~eGLvHiSel 670 (726)
T 4aid_A 638 ---GKIYD------GKVVKVVDFGAFVNFFG-AKDGLVHVSQI 670 (726)
T ss_dssp -------------------------------------------
T ss_pred ---CcEEE------EEEEEEeccEEEEEECC-CcEEEEEHHHc
Confidence 22332 24566666774444332 25566664433
No 43
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.59 E-value=0.0039 Score=64.16 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=49.2
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCc--hhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 011603 209 MSTSVFLGFDADASLNIAARIRGPND--QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAK 286 (481)
Q Consensus 209 ~eeKI~Iple~~P~FN~vgrIIGP~G--s~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak 286 (481)
+...|.|+-+ +...|||.+| ..|++|+++|||+|.+-..++... .....-.|.|+| ..++|.+|+
T Consensus 186 ~s~~v~V~~~------~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d------~~~~~~~ItItG-s~e~V~~Ar 252 (376)
T 3n89_A 186 FTLHFTLSTY------YVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNE------TRGNIYEIKVVG-NIDNVLKAR 252 (376)
T ss_dssp EEEEEEEEGG------GHHHHTCCTTSCCHHHHHHHHHTCEEECC---------------CCEEEEEEES-CHHHHHHHH
T ss_pred eEEEEEeCHH------HHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCccc------ccCCceEEEEEe-CHHHHHHHH
Confidence 3445555533 3667999999 556999999999999866543210 111235688888 899999999
Q ss_pred HHHHHHH
Q 011603 287 RLAENLL 293 (481)
Q Consensus 287 ~LiE~LL 293 (481)
+.+++||
T Consensus 253 k~I~~lL 259 (376)
T 3n89_A 253 RYIMDLL 259 (376)
T ss_dssp HHHHHTS
T ss_pred HHHHhhC
Confidence 9999987
No 44
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=96.58 E-value=0.0037 Score=56.47 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=54.7
Q ss_pred EEEEEc--CCCCcc--cceeee-chhhHHHHHhhhCCeEeeecceeCCC-C---C-------CCCCCCeEEEEeeccchh
Q 011603 105 AREIVI--NDSESS--VRYKLT-KRHTQEEIQKCTGAVVITRGKYRLPN-A---P-------PDGEKPLYLHISAGAHLK 168 (481)
Q Consensus 105 ~aEIeI--NDlpq~--~R~~LT-k~~Tq~eI~e~TGA~VtTRGrY~PP~-~---~-------~~gepPLYL~Ieg~tq~k 168 (481)
...|.| .++|.- ++-+|. +|.|++.|+++|||.|..||+=---. + . ...+-|||++|++.+. .
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~-~ 81 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDA-Q 81 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSC-C
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCc-h
Confidence 444444 456521 233343 79999999999999999998521100 0 0 1346789999999764 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHc
Q 011603 169 ETAERILAVDHAAAMVEEMLKQ 190 (481)
Q Consensus 169 dt~ERi~aVd~AvaeIkEILKe 190 (481)
+.++ ..+++|+++|+.+|..
T Consensus 82 ~~~~--~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAE--LKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHH--HHHHHHHHHHHHHSSC
T ss_pred hhHH--HHHHHHHHHHHHHCCC
Confidence 1222 4799999999999863
No 45
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=96.39 E-value=0.0025 Score=60.98 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=52.2
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCC----HHHHHHH
Q 011603 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNN----PKSLEEA 285 (481)
Q Consensus 210 eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~----~e~v~~A 285 (481)
..+|.||-+ -+|.|||++|.+++.|+++|||+|.|-- +.=.|.|.+.+ ++.+++|
T Consensus 35 i~~i~IP~~------kig~lIG~gGk~Ik~I~e~tgvkI~I~~---------------~~g~V~I~~~~~t~d~~~i~kA 93 (219)
T 2e3u_A 35 EEYVKIPKD------RIAVLIGKKGQTKKEIEKRTKTKITIDS---------------ETGEVWITSTKETEDPLAVWKA 93 (219)
T ss_dssp EEEEECCHH------HHHHHHCGGGHHHHHHHHHHTEEEEECT---------------TTCEEEEEECTTCCSHHHHHHH
T ss_pred EEEEEeCHH------HhhhhhcccHHHHHHHHHHHCcEEEEEc---------------CCCEEEEecCCCCCCHHHHHHH
Confidence 357777744 5899999999999999999999999842 11247788776 9999999
Q ss_pred HHHHHHHH
Q 011603 286 KRLAENLL 293 (481)
Q Consensus 286 k~LiE~LL 293 (481)
+++|+.|.
T Consensus 94 ~~~I~~i~ 101 (219)
T 2e3u_A 94 RDIVLAIG 101 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999987
No 46
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.17 E-value=0.0025 Score=65.58 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=52.1
Q ss_pred ccceeEEEecCCCCCCCceeeEEeCCCc--hhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHH
Q 011603 207 QAMSTSVFLGFDADASLNIAARIRGPND--QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEE 284 (481)
Q Consensus 207 k~~eeKI~Iple~~P~FN~vgrIIGP~G--s~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~ 284 (481)
...+.++.||-+ |...|||.+| +++++|++||||+|.+=-++.... .. ...---|.|+| ..++|++
T Consensus 28 ~~VTl~v~Ip~~------~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~---~~--~~ks~~VtItG-~~enVE~ 95 (376)
T 3n89_A 28 TRVTLNMEFESQ------YYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGT---TP--DPFAQQVTITG-YFGDVDR 95 (376)
T ss_dssp TEEEEEEECCGG------GHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSS---SC--CTTTTEEEEEE-EHHHHHH
T ss_pred CEEEEEEEEchh------hhhhhccCCChHHHHHHHHHHhCCeEECCCCccccc---CC--cCCCCeEEEEc-CHHHHHH
Confidence 455677777633 5778999999 999999999999999954331110 00 01112366666 5779999
Q ss_pred HHHHHHHH
Q 011603 285 AKRLAENL 292 (481)
Q Consensus 285 Ak~LiE~L 292 (481)
||+.+.+|
T Consensus 96 AR~~I~~l 103 (376)
T 3n89_A 96 ARMLMRRN 103 (376)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 99999886
No 47
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=96.09 E-value=0.0031 Score=56.09 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=47.0
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 011603 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (481)
Q Consensus 209 ~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~L 288 (481)
+++++.||-+ ++|.+||++|++++.|++|+| |.+-- .+++|--+.+.+.+++.+.+|+.|
T Consensus 4 ~~~~~~Vp~~------~vG~~IG~~G~~I~~i~~e~g--I~ii~------------~~~~~~~~i~~~~~p~~v~~~~~~ 63 (144)
T 2qnd_A 4 FHEQFIVRED------LMGLAIGTHGANIQQARKVPG--VTAID------------LDEDTCTFHIYGEDQDAVKKARSF 63 (144)
T ss_dssp CEEEEECCGG------GHHHHHCGGGHHHHHHHTSTT--EEEEE------------EETTTTEEEEEESSHHHHHHHHHH
T ss_pred eEEEEEECCc------ceeeEECCChhHHHHHHHHHC--CeEec------------cCCCchheeeccCCHHHHHHHHHh
Confidence 4567777644 699999999999999999999 44321 123455678889999999999875
Q ss_pred H
Q 011603 289 A 289 (481)
Q Consensus 289 i 289 (481)
+
T Consensus 64 l 64 (144)
T 2qnd_A 64 L 64 (144)
T ss_dssp H
T ss_pred h
Confidence 4
No 48
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=95.58 E-value=0.05 Score=43.67 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=53.4
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Ava 182 (481)
+..+|.|..-- ++..+.| |.++++|+++|||.|.+... .++...-.+.|.|.. +.+++|+.
T Consensus 7 ~~~~i~Vp~~~--vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~~~~~~v~I~G~~---------~~v~~A~~ 68 (82)
T 1zzk_A 7 ITTQVTIPKDL--AGSIIGKGGQRIKQIRHESGASIKIDEP-------LEGSEDRIITITGTQ---------DQIQNAQY 68 (82)
T ss_dssp EEEEEEEETTT--GGGGTCGGGHHHHHHHHHHCCEEEECCT-------TSCSSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChHh--cCeeECCCchHHHHHHHHHCCEEEEcCC-------CCCCCceEEEEEeCH---------HHHHHHHH
Confidence 67778887654 8999997 89999999999999988531 112222456789953 58999999
Q ss_pred HHHHHHHcC
Q 011603 183 MVEEMLKQG 191 (481)
Q Consensus 183 eIkEILKe~ 191 (481)
+|++++++.
T Consensus 69 ~I~~~i~~~ 77 (82)
T 1zzk_A 69 LLQNSVKQY 77 (82)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999764
No 49
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=95.22 E-value=0.04 Score=43.17 Aligned_cols=71 Identities=21% Similarity=0.189 Sum_probs=50.6
Q ss_pred EEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHH
Q 011603 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (481)
Q Consensus 105 ~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Avae 183 (481)
..+|.|..-- ++..+.+ |.++++|++.|||.|.+... +...++..--.+.|.|.. +.+++|+.+
T Consensus 4 ~~~i~Ip~~~--vg~IIGkgG~~Ik~I~~~tga~I~i~~~----~~~~~~~~~~~v~I~G~~---------~~v~~A~~~ 68 (76)
T 1dtj_A 4 LVEMAVPENL--VGAILGKGGKTLVEYQELTGARIQISKK----GEFLPGTRNRRVTITGSP---------AATQAAQYL 68 (76)
T ss_dssp EEEEEEETTT--HHHHHCSTTHHHHHHHHHHCCEEEECCT----TCCSTTCCEEEEEEEESH---------HHHHHHHHH
T ss_pred EEEEEEChHH--cceEECCCchHHHHHHHHhCCEEEECcC----CCCCCCCceeEEEEEeCH---------HHHHHHHHH
Confidence 4466665544 7888887 89999999999999987531 111233334556888864 489999999
Q ss_pred HHHHHHc
Q 011603 184 VEEMLKQ 190 (481)
Q Consensus 184 IkEILKe 190 (481)
|.+++.+
T Consensus 69 I~~~i~e 75 (76)
T 1dtj_A 69 ISQRVTY 75 (76)
T ss_dssp HHHHCC-
T ss_pred HHHHHhc
Confidence 9998765
No 50
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=95.10 E-value=0.074 Score=42.96 Aligned_cols=70 Identities=24% Similarity=0.368 Sum_probs=52.0
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCC-CCCCCCCeEEEEeeccchhhHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNA-PPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~-~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Av 181 (481)
...+|.|..- .++..+.| |+|+++|+++|||.|.+... +. ....++. +.|.| + + +.+++|+
T Consensus 14 ~~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~~tga~I~i~~~----~~~~~~~er~--v~I~G-~--~------~~v~~A~ 76 (85)
T 2opv_A 14 TVQEIMIPAG--KAGLVIGKGGETIKQLQERAGVKMILIQD----GSQNTNVDKP--LRIIG-D--P------YKVQQAC 76 (85)
T ss_dssp EEEEEEECTT--THHHHHTTTTHHHHHHHHHHTCEEEECSS----SCSSTTSCEE--EEEEE-C--H------HHHHHHH
T ss_pred EEEEEEeChh--heeeeECCCCHHHHHHHHHHCCEEEEcCC----CCCCCCCceE--EEEEe-C--H------HHHHHHH
Confidence 4568888754 48889987 99999999999999888541 11 1234554 46788 4 2 5899999
Q ss_pred HHHHHHHHc
Q 011603 182 AMVEEMLKQ 190 (481)
Q Consensus 182 aeIkEILKe 190 (481)
.+|++++++
T Consensus 77 ~~I~~i~~e 85 (85)
T 2opv_A 77 EMVMDILRE 85 (85)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhcC
Confidence 999999864
No 51
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=94.87 E-value=0.038 Score=44.30 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=51.6
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Ava 182 (481)
+..+|.|..-- ++..+.+ |.++++|+++|||.|.+... .++..--.+.|.|.. +.+++|+.
T Consensus 6 ~~~~i~Ip~~~--vg~IIGkgG~~Ik~I~~~sga~I~i~~~-------~~~~~~r~v~I~G~~---------~~v~~A~~ 67 (82)
T 1wvn_A 6 TTHELTIPNNL--IGCIIGRQGANINEIRQMSGAQIKIANP-------VEGSSGRQVTITGSA---------ASISLAQY 67 (82)
T ss_dssp EEEEEEEEGGG--HHHHHCGGGHHHHHHHHHHCCEEEECCC-------CTTCSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEchHh--ccceeCCCchhHHHHHHHhCCEEEEecC-------CCCCCceEEEEEcCH---------HHHHHHHH
Confidence 56677776554 7888887 89999999999999988642 122223346788865 48999999
Q ss_pred HHHHHHHcC
Q 011603 183 MVEEMLKQG 191 (481)
Q Consensus 183 eIkEILKe~ 191 (481)
+|.+++.++
T Consensus 68 ~I~~~i~~~ 76 (82)
T 1wvn_A 68 LINARLSSE 76 (82)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHHhh
Confidence 999998776
No 52
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=94.85 E-value=0.037 Score=43.68 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=51.9
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Ava 182 (481)
+..+|.|..-- ++..+.+ |.++++|+++|||.|.+... .++..--.+.|.|.. +.+++|+.
T Consensus 5 ~~~~i~Ip~~~--vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~~~~~~v~I~G~~---------~~v~~A~~ 66 (76)
T 2p2r_A 5 TSHELTIPNDL--IGCIIGRQGAKINEIRQMSGAQIKIANP-------VEGSTDRQVTITGSA---------ASISLAQY 66 (76)
T ss_dssp EEEEEEEEHHH--HHHHHCGGGHHHHHHHHHHCCEEEECCC-------CTTCSEEEEEEEECH---------HHHHHHHH
T ss_pred eEEEEEEChHH--cceEECCCChHHHHHHHHHCCEEEEcCC-------CCCCCeEEEEEEeCH---------HHHHHHHH
Confidence 55666665543 7888887 89999999999999988651 122222356788863 58999999
Q ss_pred HHHHHHHcC
Q 011603 183 MVEEMLKQG 191 (481)
Q Consensus 183 eIkEILKe~ 191 (481)
+|.+++.++
T Consensus 67 ~I~~~i~~E 75 (76)
T 2p2r_A 67 LINVRLSSE 75 (76)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHcc
Confidence 999999765
No 53
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=94.70 E-value=0.042 Score=45.19 Aligned_cols=72 Identities=14% Similarity=0.256 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Ava 182 (481)
+..+|.|..-- ++..|-+ |.++++|+++|||.|.+...- ++..--.+.|.|.. +.|++|+.
T Consensus 15 ~~~~i~Ip~~~--vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-------~g~~~r~v~I~G~~---------e~v~~A~~ 76 (92)
T 1x4n_A 15 MTEEYKVPDGM--VGFIIGRGGEQISRIQQESGCKIQIAPDS-------GGLPERSCMLTGTP---------ESVQSAKR 76 (92)
T ss_dssp EEEEEEEEHHH--HHHHHCSSSHHHHHHHHHSCCEEEECSCC-------TTCSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChHH--cceeECCCchHHHHHHHHhCCEEEEcCCC-------CCCCccEEEEEeCH---------HHHHHHHH
Confidence 66777776543 7888887 899999999999999885421 22233456788864 58999999
Q ss_pred HHHHHHHcCCC
Q 011603 183 MVEEMLKQGHA 193 (481)
Q Consensus 183 eIkEILKe~p~ 193 (481)
+|++++.+...
T Consensus 77 ~I~~~i~~~~~ 87 (92)
T 1x4n_A 77 LLDQIVEKGRS 87 (92)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhccc
Confidence 99999987643
No 54
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=94.55 E-value=0.045 Score=46.33 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=52.6
Q ss_pred EEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHH
Q 011603 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 184 (481)
Q Consensus 106 aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~AvaeI 184 (481)
.+|.|..- .++..|-| |+++++|+++|||.|.+...-.+ ..+..--.+.|.|.. +.|++|+.+|
T Consensus 9 ~~i~IP~~--~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~----~~~~~~r~V~I~G~~---------e~v~~A~~~I 73 (107)
T 2hh2_A 9 MTFSIPTH--KCGLVIGRGGENVKAINQQTGAFVEISRQLPP----NGDPNFKLFIIRGSP---------QQIDHAKQLI 73 (107)
T ss_dssp EEEEEEGG--GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT----TCCTTEEEEEEESCH---------HHHHHHHHHH
T ss_pred EEEEECHH--HcCccCCCCcHHHHHHHHHhCCEEEEcCccCC----CCCCCceEEEEECCH---------HHHHHHHHHH
Confidence 45666543 37888987 89999999999999988542211 112222456788843 5899999999
Q ss_pred HHHHHcCCC
Q 011603 185 EEMLKQGHA 193 (481)
Q Consensus 185 kEILKe~p~ 193 (481)
++++.+...
T Consensus 74 ~~~i~e~~~ 82 (107)
T 2hh2_A 74 EEKIEGPLC 82 (107)
T ss_dssp HHHSCSCCC
T ss_pred HHHHhcccc
Confidence 999987754
No 55
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=94.49 E-value=0.05 Score=44.38 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=52.8
Q ss_pred eEEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHH
Q 011603 103 IIAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (481)
Q Consensus 103 ~~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Av 181 (481)
.+..+|.|..- .++..+-| |.++++|+++|||.|.+... .....+ -.+.|.|.. +.+++|+
T Consensus 13 ~~~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-----~~~~~~--~~v~I~G~~---------e~v~~A~ 74 (89)
T 1j5k_A 13 IITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP-----LEGSED--RIITITGTQ---------DQIQNAQ 74 (89)
T ss_dssp EEEEEEEEEHH--HHHHHHCGGGHHHHHHHHHTCCEEEECSC-----CSSSSE--EEEEEEEEH---------HHHHHHH
T ss_pred eEEEEEEEChh--hcceeECCCCHhHHHHHHHhCCeEEecCC-----CCCCCc--cEEEEEcCH---------HHHHHHH
Confidence 46777877654 37888887 89999999999999988531 111223 356788864 4899999
Q ss_pred HHHHHHHHcC
Q 011603 182 AMVEEMLKQG 191 (481)
Q Consensus 182 aeIkEILKe~ 191 (481)
.+|++++++.
T Consensus 75 ~~I~~~i~e~ 84 (89)
T 1j5k_A 75 YLLQNSVKQY 84 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 56
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=94.36 E-value=0.058 Score=44.50 Aligned_cols=74 Identities=23% Similarity=0.299 Sum_probs=53.6
Q ss_pred eeEEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHH
Q 011603 102 LIIAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHA 180 (481)
Q Consensus 102 ~~~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~A 180 (481)
..+..+|.|..- .++..+-| |+++++|+++|||.|.+...-.+ ....++. +.|.|.. +.|++|
T Consensus 13 ~~~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~r~--v~I~G~~---------~~v~~A 76 (94)
T 1x4m_A 13 GNAVQEIMIPAS--KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ---NTGADKP--LRITGDP---------YKVQQA 76 (94)
T ss_dssp CCEEEEEEECHH--HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC---SSCSCEE--EEEEECT---------TTHHHH
T ss_pred CcEEEEEEEChh--hcceEECCCCHHHHHHHHHHCCeEEecCCCCC---CCCCceE--EEEEeCH---------HHHHHH
Confidence 346778888654 48889987 99999999999999887432110 1123444 5688843 479999
Q ss_pred HHHHHHHHHcC
Q 011603 181 AAMVEEMLKQG 191 (481)
Q Consensus 181 vaeIkEILKe~ 191 (481)
+.+|++++++.
T Consensus 77 ~~~I~~~i~~~ 87 (94)
T 1x4m_A 77 KEMVLELIRDQ 87 (94)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHHhcc
Confidence 99999999765
No 57
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=94.34 E-value=0.15 Score=42.80 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=55.1
Q ss_pred CceeEEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHH
Q 011603 100 DELIIAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVD 178 (481)
Q Consensus 100 de~~~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd 178 (481)
+......+|.|..-- ++..|.+ |.++++|+++|||.|.+...-- + ....++ .+.|.|.. +.++
T Consensus 11 ~~ap~~~~i~Ip~~~--ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~--~-~~~~~~--~V~I~G~~---------~~v~ 74 (104)
T 1we8_A 11 ENTPVFEQLSVPQRS--VGRIIGRGGETIRSICKASGAKITCDKESE--G-TLLLSR--LIKISGTQ---------KEVA 74 (104)
T ss_dssp SSCEEEEEEEEETTT--HHHHHTTTSHHHHHHHHHHCCEEEECCSSC--C-SSSSEE--EEEEEEEH---------HHHH
T ss_pred CCCCEEEEEEEChhh--eeeeECCCCHHHHHHHHHHCCEEEEecCCC--C-CCCCcc--eEEEEcCH---------HHHH
Confidence 334466788886554 8899997 9999999999999998853210 0 011233 46788865 3689
Q ss_pred HHHHHHHHHHHcCC
Q 011603 179 HAAAMVEEMLKQGH 192 (481)
Q Consensus 179 ~AvaeIkEILKe~p 192 (481)
+|+.+|.+++.+++
T Consensus 75 ~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 75 AAKHLILEKVSEDE 88 (104)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCh
Confidence 99999999997753
No 58
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=94.16 E-value=0.08 Score=45.08 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=51.6
Q ss_pred EEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHH
Q 011603 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (481)
Q Consensus 105 ~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Avae 183 (481)
..+|.|..-- ++..|-| |+++++|+++|||.|.+.- .. ++..--.+.|.|.. +.+++|+.+
T Consensus 12 ~~~i~Ip~~~--iG~IIGkgG~~Ik~I~~~TGakI~I~~-----~~--~~~~er~V~I~G~~---------e~v~~A~~~ 73 (106)
T 2hh3_A 12 GIDVPVPRHS--VGVVIGRSGEMIKKIQNDAGVRIQFKQ-----DD--GTGPEKIAHIMGPP---------DRCEHAARI 73 (106)
T ss_dssp CEEEEEETTT--HHHHHTTTTHHHHHHHHHHTCEEEECS-----SC--SSSSEEEEEEESSH---------HHHHHHHHH
T ss_pred EEEEEECHHH--cCccCCCCcHHHHHHHHHHCcEEEEec-----CC--CCCceeEEEEEeCH---------HHHHHHHHH
Confidence 3467775544 7888887 9999999999999998853 11 11222346788853 589999999
Q ss_pred HHHHHHcCCC
Q 011603 184 VEEMLKQGHA 193 (481)
Q Consensus 184 IkEILKe~p~ 193 (481)
|++++.+...
T Consensus 74 I~~ii~~~~~ 83 (106)
T 2hh3_A 74 INDLLQSLRS 83 (106)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHhcccc
Confidence 9999987643
No 59
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=94.10 E-value=0.055 Score=49.09 Aligned_cols=69 Identities=9% Similarity=0.102 Sum_probs=51.9
Q ss_pred CCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHhhh
Q 011603 222 SLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECG 301 (481)
Q Consensus 222 ~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~LiE~LL~tV~eE~~ 301 (481)
+-.+++.|+||+|+.|++||..|++.|+|.=- ++..---|.|-|.... =.+||.|+.+|.+--++...
T Consensus 63 E~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~-----------~s~g~tEVtIfG~~~~-Q~rak~MI~sLA~~hr~~~~ 130 (140)
T 3v69_A 63 EPRLLEIMFGKDGEHIPHLESMLHTLIHVNVW-----------GPERRAEIWIFGPPPF-RRDVDRMLTDLAHYCRMKLM 130 (140)
T ss_dssp CGGGHHHHHCGGGTTHHHHHHHHTSEEEEECC-----------CTTSCEEEEEESCHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhhhcccCCCcCccchHHhhcceeEEEecc-----------CCCCcEEEEEECCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999999999999831 1122255777765444 45689999999888877764
Q ss_pred c
Q 011603 302 A 302 (481)
Q Consensus 302 ~ 302 (481)
+
T Consensus 131 ~ 131 (140)
T 3v69_A 131 E 131 (140)
T ss_dssp H
T ss_pred H
Confidence 3
No 60
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=94.05 E-value=0.08 Score=41.61 Aligned_cols=65 Identities=23% Similarity=0.177 Sum_probs=49.8
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Ava 182 (481)
...+|.|+.-- .|..+.+ |.++.+|+++|||.|..- + +++..-.+.|.|.. +.+++|+.
T Consensus 5 ~~~~i~I~~~~--ig~iIG~gG~~I~~I~e~tg~~I~i~-----~----~g~~~~~V~I~G~~---------~~v~~A~~ 64 (71)
T 1vig_A 5 DYVEINIDHKF--HRHLIGKSGANINRIKDQYKVSVRIP-----P----DSEKSNLIRIEGDP---------QGVQQAKR 64 (71)
T ss_dssp EEEEEEECSSH--HHHHTCSSCCHHHHHHHHTCCEEECC-----C----CCSSSEEEEEEESS---------HHHHHHHH
T ss_pred EEEEEEECHHH--hhhhcCCCCccHHHHHHHHCCEEEEC-----C----CCCcccEEEEEcCH---------HHHHHHHH
Confidence 55678887665 8999987 999999999999998762 2 12233467889975 47999999
Q ss_pred HHHHHH
Q 011603 183 MVEEML 188 (481)
Q Consensus 183 eIkEIL 188 (481)
+|.+++
T Consensus 65 ~I~~i~ 70 (71)
T 1vig_A 65 ELLELA 70 (71)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 998874
No 61
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.01 E-value=0.026 Score=62.70 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=32.4
Q ss_pred eeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011603 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASR 304 (481)
Q Consensus 225 ~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~LiE~LL~tV~eE~~~~r 304 (481)
-+|.+|||+|.++|.|.++||++|-|-.. =.|+|++.+.+.+++|+++++.|.++ .++
T Consensus 608 ki~~vIG~gGk~Ik~I~~~~G~~IdI~~d----------------G~v~Is~~~~~~~~~a~~~i~~i~~p--~~~---- 665 (757)
T 1e3p_A 608 KIGEVIGPKRQMINQIQEDTGAEITIEDD----------------GTIYIGAADGPAAEAARATINGIANP--TSP---- 665 (757)
T ss_dssp -------------CTTCCCCCSCC------------------------CCCBSSHHHHCC--------------------
T ss_pred HeehcccccceeeehhhHhhCCEEEecCC----------------ceEEEecCCHHHHHHHHHHHHHhcch--hhc----
Confidence 37899999999999999999999977542 24677788888899999898887633 111
Q ss_pred cccccccccCCCchhhccCcccccccccCCcccchhhcccccc
Q 011603 305 VSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNL 347 (481)
Q Consensus 305 ~~~~~~y~~~pppq~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 347 (481)
...+.|. --+.++..+|..-.+.. ..-||.|--++
T Consensus 666 -~vG~i~~------G~V~~i~~fGaFV~l~~-g~eGLvHiSel 700 (757)
T 1e3p_A 666 -EVGERIL------GSVVKTTTFGAFVSLLP-GKDGLLHISQI 700 (757)
T ss_dssp --------------CBEEECC-CSCEECCC----CCCCC----
T ss_pred -ccccEEE------EEEEEccccEEEEEEcC-CcEEEEEhHHh
Confidence 1122332 24666677774444432 25577765544
No 62
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.81 E-value=0.1 Score=42.69 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=52.2
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Ava 182 (481)
+..+|.|.+ ..+++.+-| |+|+++|+++|||.|.+-. . ++++ .+.|+|.. +.+++|+.
T Consensus 10 ~~~~i~VP~--~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~-----~---~~~~--~v~ItG~~---------e~v~~A~~ 68 (83)
T 2dgr_A 10 TTIQVRVPY--RVVGLVVGPKGATIKRIQQRTHTYIVTPG-----R---DKEP--VFAVTGMP---------ENVDRARE 68 (83)
T ss_dssp EEEEEECCH--HHHHHHHTTTTSSHHHHHHHTTCEEECCC-----S---SSCC--EEEEEECT---------TTHHHHHH
T ss_pred eEEEEEeCh--HHeeeeECCCchHHHHHHHHhCCeEEecC-----C---CCCC--eEEEEcCH---------HHHHHHHH
Confidence 677888887 458999997 9999999999999988732 1 2233 36788876 37999999
Q ss_pred HHHHHHHcC
Q 011603 183 MVEEMLKQG 191 (481)
Q Consensus 183 eIkEILKe~ 191 (481)
+|.+++...
T Consensus 69 ~I~~~i~~r 77 (83)
T 2dgr_A 69 EIEAHITLR 77 (83)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhcc
Confidence 999987643
No 63
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.78 E-value=0.12 Score=42.72 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=52.8
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Ava 182 (481)
+...|.|+.-- .|+.+.+ |.++++|+++|||.|..-. .. +.+. .+.|.|.. +.+++|+.
T Consensus 17 ~t~~i~Ip~~~--ig~IIG~gG~~Ik~I~~etg~~I~i~~-----~~--~~~~--~V~I~G~~---------e~v~~A~~ 76 (94)
T 2cte_A 17 ASATVAIPKEH--HRFVIGKNGEKLQDLELKTATKIQIPR-----PD--DPSN--QIKITGTK---------EGIEKARH 76 (94)
T ss_dssp EEEEEECCTTT--HHHHHCSSSCHHHHHHHHTTCCCBCCC-----TT--SSCC--EEEEEECH---------HHHHHHHH
T ss_pred eEEEEEEChHH--eeeeECCCChhHHHHHHHHCCEEEeCC-----CC--CCCC--eEEEEECH---------HHHHHHHH
Confidence 67888888665 8999998 7999999999999987732 11 1122 56788863 58999999
Q ss_pred HHHHHHHcC
Q 011603 183 MVEEMLKQG 191 (481)
Q Consensus 183 eIkEILKe~ 191 (481)
+|.+++++.
T Consensus 77 ~I~~i~~~~ 85 (94)
T 2cte_A 77 EVLLISAEQ 85 (94)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcc
Confidence 999998765
No 64
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=93.72 E-value=0.087 Score=41.54 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=49.4
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Ava 182 (481)
+...+.|..- .++..+.+ |.++++|+++|||.|.+... + ..++ .+.|.|.. +.+++|+.
T Consensus 5 ~~~~i~ip~~--~ig~iIGkgG~~Ik~I~~~tga~I~i~~~----~---~~er--~v~I~G~~---------~~v~~A~~ 64 (73)
T 2axy_A 5 LTIRLLMHGK--EVGSIIGKKGESVKKMREESGARINISEG----N---CPER--IITLAGPT---------NAIFKAFA 64 (73)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECSS----C---CSEE--EEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChh--HeeeEECCCCHHHHHHHHHHCCEEEEecC----C---CCcE--EEEEEeCH---------HHHHHHHH
Confidence 4455566543 37778887 89999999999999887432 1 1233 45788864 58999999
Q ss_pred HHHHHHHcC
Q 011603 183 MVEEMLKQG 191 (481)
Q Consensus 183 eIkEILKe~ 191 (481)
+|.++|.++
T Consensus 65 ~I~~~l~ed 73 (73)
T 2axy_A 65 MIIDKLEED 73 (73)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999999864
No 65
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.35 E-value=0.031 Score=61.75 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred eeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 011603 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 294 (481)
Q Consensus 225 ~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~LiE~LL~ 294 (481)
-++.+|||+|.+++.|..+||++|-|... -.++|++.+.+.+++|+++++.|+.
T Consensus 570 ki~~~ig~gGk~I~~I~~~~G~~IdI~~d----------------g~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 570 KIKDVIGKGGSVIRALTEETGTTIEIEDD----------------GTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HhcccccccceeeeeeehhhCceEEecCC----------------ccEEEecCCHHHHHHHHHHHHHHhh
Confidence 36789999999999999999999977642 3577888889999999999988863
No 66
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=92.62 E-value=0.14 Score=43.23 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=50.7
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Ava 182 (481)
+...|.|+.-- .|..+.+ |.++.+|+++|||.|..- +. ++.+-.+.|.|.. +.+++|+.
T Consensus 17 ~~~~i~Ip~~~--ig~IIG~gG~~Ir~I~eetg~~I~I~-----~~----g~~~~~V~I~G~~---------e~v~~A~~ 76 (104)
T 2ctk_A 17 VTIEVEVPFDL--HRYVIGQKGSGIRKMMDEFEVNIHVP-----AP----ELQSDIIAITGLA---------ANLDRAKA 76 (104)
T ss_dssp EEEEEECCHHH--HHHHHCSSSHHHHHHHHHTCCEEECC-----CT----TTTCCEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChHH--ccceeCCCchHHHHHHHHHCCEEEec-----CC----CCCcceEEEEcCH---------HHHHHHHH
Confidence 56778887544 8999997 999999999999998762 21 1122367888864 47999999
Q ss_pred HHHHHHHc
Q 011603 183 MVEEMLKQ 190 (481)
Q Consensus 183 eIkEILKe 190 (481)
+|.+++++
T Consensus 77 ~I~~i~~e 84 (104)
T 2ctk_A 77 GLLERVKE 84 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998765
No 67
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=92.41 E-value=0.093 Score=46.69 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=54.3
Q ss_pred HHHHHhhhCCeEeeecce-eC--CCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCccc
Q 011603 127 QEEIQKCTGAVVITRGKY-RL--PNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQT 200 (481)
Q Consensus 127 q~eI~e~TGA~VtTRGrY-~P--P~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~AvaeIkEILKe~p~~~pp~~~ 200 (481)
++||....... .+ ++ +..++++.+|-|......++++|.+.|.++.++...+|.+||+..++|.+|.+|
T Consensus 50 ieeIt~kL~~g-----~l~i~~~~~~RSPSPpP~Yd~~G~R~NTRE~R~r~~LE~ER~~lIe~~~k~~P~fkpP~DY 121 (124)
T 4fxw_B 50 IEDLTRKLRTG-----DLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADY 121 (124)
T ss_dssp HHHHHHHHHHC-----CCCCCSSTTSSCCCCCCCBCTTSCBSSCHHHHHHHHHHHHHHHHHHHGGGTCSSCCCCCC-
T ss_pred HHHHHHHHhcC-----CcCCCCCcccCCCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 66666655432 22 33 234789999999988888888888889999999999999999999999988775
No 68
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=92.15 E-value=0.33 Score=39.18 Aligned_cols=70 Identities=23% Similarity=0.213 Sum_probs=49.0
Q ss_pred EEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHH
Q 011603 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185 (481)
Q Consensus 107 EIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~AvaeIk 185 (481)
+|.|..- .++..+.+ |.++.+|+++|||.|.+... +...++..--.+.|.|.. +.+++|+.+|.
T Consensus 6 ~i~IP~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~----~~~~~g~~~r~v~I~G~~---------~~v~~A~~~I~ 70 (87)
T 1ec6_A 6 EIAVPEN--LVGAILGKGGKTLVEYQELTGARIQISKK----GEFLPGTRNRRVTITGSP---------AATQAAQYLIS 70 (87)
T ss_dssp EEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCT----TCBSTTSCEEEEEEESSH---------HHHHHHHHHHH
T ss_pred EEEEChH--HcCeeECCCcHhHHHHHHHhCCEEEEccC----CCCCCCCCceEEEEEcCH---------HHHHHHHHHHH
Confidence 4444433 36777886 89999999999999887531 111123333456888864 48999999999
Q ss_pred HHHHcC
Q 011603 186 EMLKQG 191 (481)
Q Consensus 186 EILKe~ 191 (481)
+++.+.
T Consensus 71 ~~i~~~ 76 (87)
T 1ec6_A 71 QRVTYE 76 (87)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 998764
No 69
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=92.14 E-value=0.25 Score=41.07 Aligned_cols=69 Identities=6% Similarity=0.044 Sum_probs=52.3
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Ava 182 (481)
+..+|.|+.-- .|..+.+ |.++.+|+++|||.|.. |+. .+...-.+.|.|.. +.+++|+.
T Consensus 17 vt~~i~Ip~~~--ig~IIG~gG~~Ir~I~e~tg~~I~i-----~~~---g~~~~~~V~I~G~~---------e~v~~A~~ 77 (95)
T 2ctm_A 17 VSEDVPLDHRV--HARIIGARGKAIRKIMDEFKVDIRF-----PQS---GAPDPNCVTVTGLP---------ENVEEAID 77 (95)
T ss_dssp CCEEEECCTTT--HHHHHCSSSCHHHHHHHHHTCEEEC-----CCT---TCSCTTEEEEESCH---------HHHHHHHH
T ss_pred EEEEEEECHHH--ccccCCCCcchHHHHHHHHCCeEEe-----cCC---CCCCCcEEEEEcCH---------HHHHHHHH
Confidence 67788888765 8999987 99999999999999887 221 11123356788864 47999999
Q ss_pred HHHHHHHcC
Q 011603 183 MVEEMLKQG 191 (481)
Q Consensus 183 eIkEILKe~ 191 (481)
+|..++++-
T Consensus 78 ~I~~i~~e~ 86 (95)
T 2ctm_A 78 HILNLEEEY 86 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988763
No 70
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=91.64 E-value=0.37 Score=40.17 Aligned_cols=70 Identities=4% Similarity=0.004 Sum_probs=51.7
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Ava 182 (481)
|...|.|+.-- .+..+.+ |.++++|+++|||.|.+- +... +++..-.+.|.|.. +.+++|+.
T Consensus 17 ~~~~i~Ip~~~--ig~IIGkgG~~Ik~I~~etg~~I~i~-----~~g~-~~~~~~~V~I~G~~---------e~v~~A~~ 79 (97)
T 2ctl_A 17 FKLSVTVDPKY--HPKIIGRKGAVITQIRLEHDVNIQFP-----DKDD-GNQPQDQITITGYE---------KNTEAARD 79 (97)
T ss_dssp CEEEEECCTTT--HHHHSCSSSCHHHHHHHHHTCEEECC-----CTTT-CSSCSSEEEEESCH---------HHHHHHHH
T ss_pred eeEEEEECHHH--hhhcCCCCchhHHHHHHHHCCEEEec-----CCCC-CCCCccEEEEEeCH---------HHHHHHHH
Confidence 67788887655 8999998 999999999999998762 2211 11223345788863 47899999
Q ss_pred HHHHHHHc
Q 011603 183 MVEEMLKQ 190 (481)
Q Consensus 183 eIkEILKe 190 (481)
+|..++++
T Consensus 80 ~I~~iv~e 87 (97)
T 2ctl_A 80 AILRIVGE 87 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998865
No 71
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=90.40 E-value=0.31 Score=45.77 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=52.3
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEE----eCCHHHHHHH
Q 011603 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLS----SNNPKSLEEA 285 (481)
Q Consensus 210 eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Is----a~~~e~v~~A 285 (481)
+.+|.||-+ -+|.|+|.+|.+++.|++++||+|.|-.+ + =-+.|. ..|+..+.+|
T Consensus 5 ~~~i~VP~~------rvg~liGk~g~~~k~i~e~~g~~i~id~~--------------~-~~V~i~t~~~t~dp~~i~KA 63 (191)
T 1tua_A 5 RIYVKVKPE------RLGAVIGPRGEVKAEIMRRTGTVITVDTE--------------N-SMVIVEPEAEGIPPVNLMKA 63 (191)
T ss_dssp CEEEECCGG------GHHHHHCGGGHHHHHHHHHHTEEEEEETT--------------T-TEEEEEESSTTSCHHHHHHH
T ss_pred ceEEECCHH------HhhHHHhcCHhHHHHHHHHHCcEEEEEcC--------------C-CeEEEEeCCCCCCHHHHHHH
Confidence 356777733 48999999999999999999999999642 1 123344 3688999999
Q ss_pred HHHHHHHHHHHHHh
Q 011603 286 KRLAENLLDTISAE 299 (481)
Q Consensus 286 k~LiE~LL~tV~eE 299 (481)
+++|..+...+..+
T Consensus 64 ~dlI~ai~rgf~~e 77 (191)
T 1tua_A 64 AEVVKAISLGFPPE 77 (191)
T ss_dssp HHHHHHHHHTCCHH
T ss_pred HHHHHHHHcCCCHH
Confidence 99998877654433
No 72
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=88.74 E-value=0.37 Score=40.24 Aligned_cols=68 Identities=12% Similarity=0.056 Sum_probs=50.9
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhh-CCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCT-GAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~T-GA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Av 181 (481)
.+..|.|+.- ..|+.+.+ |.++.+|+++| |+.|.. |+ ++...-...|.|.. +.|++|+
T Consensus 17 vt~~i~Ip~~--~i~~iIG~gGk~Ir~I~eetggv~I~i-----~~----~g~~~~~V~I~G~~---------~~v~~A~ 76 (95)
T 2ctj_A 17 AEVEVSIPAK--LHNSLIGTKGRLIRSIMEECGGVHIHF-----PV----EGSGSDTVVIRGPS---------SDVEKAK 76 (95)
T ss_dssp CCEEEECCHH--HHHHHHCSSSHHHHHHHHHHTSCEEEC-----CC----TTTTCCEEEEESCH---------HHHHHHH
T ss_pred EEEEEEECHH--HHhhhCCCCchhHHHHHHHcCCCEEEe-----CC----CCCCcceEEEEcCH---------HHHHHHH
Confidence 4566777644 37899987 79999999999 998854 32 22233456889975 4899999
Q ss_pred HHHHHHHHcC
Q 011603 182 AMVEEMLKQG 191 (481)
Q Consensus 182 aeIkEILKe~ 191 (481)
++|++++.+-
T Consensus 77 ~~I~~iv~e~ 86 (95)
T 2ctj_A 77 KQLLHLAEEK 86 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9999998753
No 73
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=81.51 E-value=3.2 Score=34.92 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=49.6
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhh-hCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKC-TGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~-TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Av 181 (481)
++.+|+|.--= .|+++.+ |+++.+|.++ +++.| .+|.+ +. -+.|+|+. +.|++|.
T Consensus 27 ~t~~i~vp~~~--h~~IIG~~G~~Ik~i~~~~~~v~I-----~fp~~-----~~--~ItI~G~~---------~~V~~a~ 83 (102)
T 2ctf_A 27 TVSSVAAPSWL--HRFIIGKKGQNLAKITQQMPKVHI-----EFTEG-----ED--KITLEGPT---------EDVSVAQ 83 (102)
T ss_dssp EEEEEECCSTT--HHHHHTTTTCHHHHHHHHCSSSEE-----EECSS-----SC--EEEEEECH---------HHHHHHH
T ss_pred EEEEEEeCHHH--HhhhcCCCCccHHHHHHHcCCcEE-----EeCCC-----CC--EEEEECCH---------HHHHHHH
Confidence 67888887544 8999996 9999999996 57765 25542 22 57899975 4899999
Q ss_pred HHHHHHHHcC
Q 011603 182 AMVEEMLKQG 191 (481)
Q Consensus 182 aeIkEILKe~ 191 (481)
.+|..++++-
T Consensus 84 ~~I~~~v~el 93 (102)
T 2ctf_A 84 EQIEGMVKDL 93 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 74
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=69.60 E-value=2.7 Score=35.25 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=46.8
Q ss_pred EEEEEEcCCCCcccceeeec-hhhHHHHHhhhCCe-EeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHH
Q 011603 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAV-VITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (481)
Q Consensus 104 ~~aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~-VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~Av 181 (481)
|...+.|+-= ..|..+.+ |.++++|.++||+. |...- ++. .+.|.|.+. +++++|+
T Consensus 15 ~i~~i~I~~d--kIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG--~V~I~g~~~--------ea~~~A~ 72 (91)
T 2cpq_A 15 FHEEFVVRED--LMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTG--TFRIYGESA--------DAVKKAR 72 (91)
T ss_dssp EEEEEECCHH--HHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTT--EEEEEESSH--------HHHHHHH
T ss_pred eEEEEEEChH--HhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCC--EEEEEECCH--------HHHHHHH
Confidence 6778888743 47889987 99999999999997 88731 112 346888763 5889998
Q ss_pred HHHHHHH
Q 011603 182 AMVEEML 188 (481)
Q Consensus 182 aeIkEIL 188 (481)
++|+.+.
T Consensus 73 ~~I~~ie 79 (91)
T 2cpq_A 73 GFLEFVE 79 (91)
T ss_dssp HHHSCCC
T ss_pred HHHHhhh
Confidence 8887653
No 75
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=46.64 E-value=24 Score=33.50 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=37.7
Q ss_pred eeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 011603 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (481)
Q Consensus 225 ~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~Ak~ 287 (481)
.+.+++|++|..++.|.+.++|+|.| |+ .-.++|.+.+.+....+..
T Consensus 158 ~~~rl~~~~~~~l~~l~~~~~~~i~v-G~---------------NG~IWi~~~~~~~~~~~~~ 204 (235)
T 2z0s_A 158 KVPRVIGRKMSMLKTLEEKTECKIFV-AR---------------NGRIHLECPNEDLEAIAVM 204 (235)
T ss_dssp GSGGGTCGGGHHHHHHHHHHCCEEEE-ET---------------TTEEEEECSCHHHHHHHHH
T ss_pred HhHHHhcCcchHHHHhcccCCeEEEE-eC---------------CCEEEEecCCHHHHHHHHH
Confidence 57789999999999999999999988 43 1479999999876554433
No 76
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=44.88 E-value=14 Score=40.43 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=42.2
Q ss_pred EEEEcCCCCcccceeeec-hhhHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHH
Q 011603 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 184 (481)
Q Consensus 106 aEIeINDlpq~~R~~LTk-~~Tq~eI~e~TGA~VtTRGrY~PP~~~~~gepPLYL~Ieg~tq~kdt~ERi~aVd~AvaeI 184 (481)
..|.|+ |.+.|-.|.+ |.++++|+++||+.|.+-- +- -..|.+.+. +.+++|+++|
T Consensus 569 ~~~~I~--~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d-----------~G--~V~I~~~~~--------~~~~~A~~~I 625 (630)
T 3u1k_A 569 ETVQVP--LSKRAKFVGPGGYNLKKLQAETGVTISQVD-----------EE--TFSVFAPTP--------SAMHEARDFI 625 (630)
T ss_dssp EEEECC--HHHHHHHHCGGGHHHHHHHHHHCCEEEECS-----------SS--EEEEEESSH--------HHHHHHHHHT
T ss_pred EEEEeC--hhHhheeECCCChhHHHHHHHHCCEEEEcC-----------Cc--EEEEEeCCH--------HHHHHHHHHH
Confidence 445554 3346778886 8999999999999987721 11 235888763 4789999999
Q ss_pred HHHHH
Q 011603 185 EEMLK 189 (481)
Q Consensus 185 kEILK 189 (481)
+.|++
T Consensus 626 ~~i~~ 630 (630)
T 3u1k_A 626 TEICK 630 (630)
T ss_dssp TC---
T ss_pred HHHhC
Confidence 88764
No 77
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=35.76 E-value=1.3e+02 Score=25.22 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=31.9
Q ss_pred hhHHHHHHhh-CcEEEEeecCCCCCCCCCCCCCCCC-cEEEEEeCCHHHHHHHHHHHHHHHHHHHHh
Q 011603 235 QYINHIMNET-GATVLLRGRGSGNSEGLQGEEVHQP-LHLFLSSNNPKSLEEAKRLAENLLDTISAE 299 (481)
Q Consensus 235 s~lK~Iq~ET-GaKI~IRGRGSg~~E~~~g~Es~EP-LHV~Isa~~~e~v~~Ak~LiE~LL~tV~eE 299 (481)
..+.-|+-+. +.+|.||-- | .|| ++|++++.+.+ .|.++++.+.+.|.+.
T Consensus 45 ~~idgl~~~~~~gwvlvRpS--G----------TEP~irvy~Ea~~~~---~~~~~~~~~~~~i~~~ 96 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPS--G----------TEDIVRVYAEANSQE---SADRLAYEVSLLVFQL 96 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECS--S----------SSSSEEEEEEESSHH---HHHHHHHHHHHHHHHH
T ss_pred hhhhcEEEEcCCcEEEEEeC--C----------CccEEEEEEEECCHH---HHHHHHHHHHHHHHHH
Confidence 3445555543 458888863 3 355 99999999875 4555666666655544
No 78
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=35.03 E-value=72 Score=28.67 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=26.9
Q ss_pred HHHHHhhCcEE--EEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHH
Q 011603 238 NHIMNETGATV--LLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEA 285 (481)
Q Consensus 238 K~Iq~ETGaKI--~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~~A 285 (481)
.++.+|.+-.| +|-|.|||. |-+...++|.+.+++|
T Consensus 63 erl~~efni~v~y~imgsgsgv------------m~i~f~gddlea~eka 100 (170)
T 4hhu_A 63 ERLKAEFNINVQYQIMGSGSGV------------MVIVFEGDDLEALEKA 100 (170)
T ss_dssp HHHHHHHTCEEEEEEECTTCCE------------EEEEEECSCHHHHHHH
T ss_pred HHHHHhcceEEEEEEEeCCceE------------EEEEEecCcHHHHHHH
Confidence 35566666555 788888875 6678889999988887
No 79
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=33.50 E-value=9.8 Score=34.24 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=25.3
Q ss_pred eeEEeCCCchhHHHHHHhhCcEEEEee
Q 011603 226 AARIRGPNDQYINHIMNETGATVLLRG 252 (481)
Q Consensus 226 vgrIIGP~Gs~lK~Iq~ETGaKI~IRG 252 (481)
+|..||++|+.++.|++|.|-||-|--
T Consensus 47 vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 47 AGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp HHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred ccccCccCchHHHHHHHHhCCeeEEEE
Confidence 899999999999999999999997765
No 80
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=31.36 E-value=31 Score=32.66 Aligned_cols=39 Identities=13% Similarity=0.329 Sum_probs=32.1
Q ss_pred eeeEEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCH
Q 011603 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNP 279 (481)
Q Consensus 225 ~vgrIIGP~Gs~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~ 279 (481)
.+.+++|+++..++.|.+.++|.|.| |. + -.++|.+.+.
T Consensus 146 ~v~rl~~~~~~~l~~l~~~~~~ei~v-G~--------N-------G~IWi~~~~~ 184 (229)
T 2ba0_A 146 RVPRVIGKKGSMIKLLKSELDVQIVV-GQ--------N-------GLIWVNGDRR 184 (229)
T ss_dssp GHHHHHCGGGHHHHHHHHHHTCEEEE-CT--------T-------SEEEEESCHH
T ss_pred HhHHHhcCCchHHHHhcccCCeEEEE-EC--------C-------cEEEEeCCch
Confidence 57789999999999999999999988 31 1 4789997655
No 81
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=27.37 E-value=70 Score=26.66 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=24.3
Q ss_pred CCCeEEE-EeeccchhhHHHHHHHHHHHHHHHHHHHHcC
Q 011603 154 EKPLYLH-ISAGAHLKETAERILAVDHAAAMVEEMLKQG 191 (481)
Q Consensus 154 epPLYL~-Ieg~tq~kdt~ERi~aVd~AvaeIkEILKe~ 191 (481)
-+|+|-. +++.. ++++| +++++|++.|.+.++..
T Consensus 50 gaP~Y~i~~~~~D--~k~ge--~~L~~ai~~i~~~i~~~ 84 (93)
T 2qn6_B 50 GAPRYRVDVVGTN--PKEAS--EALNQIISNLIKIGKEE 84 (93)
T ss_dssp STTEEEEEEEESC--HHHHH--HHHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEEEecC--HHHHH--HHHHHHHHHHHHHHHHh
Confidence 4677743 34433 67777 79999999999988763
No 82
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=26.99 E-value=26 Score=27.67 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=11.3
Q ss_pred ccCCCCCcCCChHHHH
Q 011603 399 SGYEGIYPQATPLQQV 414 (481)
Q Consensus 399 ~gy~~iypqatplqq~ 414 (481)
-|||+|+|+ |+.-++
T Consensus 43 vGyGdi~P~-t~~~r~ 57 (82)
T 3ldc_A 43 VGYGDYSPH-TPLGMY 57 (82)
T ss_dssp CCCCSSCCC-SHHHHH
T ss_pred cCCCCCCCC-CccHHH
Confidence 599999998 555544
No 83
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=22.43 E-value=20 Score=34.39 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=27.9
Q ss_pred cceeEEEecCCCCCCCceeeEEeCCCchhHHHH--------HHhhCcEEEEe
Q 011603 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHI--------MNETGATVLLR 251 (481)
Q Consensus 208 ~~eeKI~Iple~~P~FN~vgrIIGP~Gs~lK~I--------q~ETGaKI~IR 251 (481)
.....|||.-+. -.+.|||.+|..+|+| |+..|+||.|.
T Consensus 239 ~i~a~i~ve~~~-----~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 239 VIKGEIIVDREN-----LKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEESSGG-----GHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEccCC-----cceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 445556665332 4678999999999987 55678888775
No 84
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=21.94 E-value=76 Score=26.60 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=34.5
Q ss_pred hhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHH-HHHHHHHHHHHH
Q 011603 243 ETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLE-EAKRLAENLLDT 295 (481)
Q Consensus 243 ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~-~Ak~LiE~LL~t 295 (481)
..|.++.|+|+|--. . + ..-+|+|.|.-.-|+.+. +.++++++|++.
T Consensus 49 ~~G~~~rl~G~G~p~-~---~--~~GDL~v~~~V~~P~~Ls~~q~~~l~~l~~~ 96 (109)
T 3i38_A 49 QAGQRLRIKGKGLVS-K---T--HTGDLFAVIKIVMPTKPDEKARELWQQLAAA 96 (109)
T ss_dssp CTTCEEEETTCSCBC-S---S--CBCCEEEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred CcCeEEEECCccCCC-C---C--CCcCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 568999999999754 1 1 356799999988887764 357777777653
No 85
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=21.29 E-value=47 Score=28.66 Aligned_cols=15 Identities=40% Similarity=0.849 Sum_probs=11.6
Q ss_pred ccCCCCCcCCChHHHH
Q 011603 399 SGYEGIYPQATPLQQV 414 (481)
Q Consensus 399 ~gy~~iypqatplqq~ 414 (481)
-|||+|+|. |++-++
T Consensus 58 vGyGDi~P~-t~~gr~ 72 (137)
T 4h33_A 58 VGYGDIVPV-TPIGRI 72 (137)
T ss_dssp CCCSSSCCC-SHHHHH
T ss_pred ccCCCCCCC-CHhHHH
Confidence 599999997 665553
No 86
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=20.66 E-value=49 Score=28.21 Aligned_cols=15 Identities=33% Similarity=0.694 Sum_probs=11.5
Q ss_pred ccCCCCCcCCChHHHH
Q 011603 399 SGYEGIYPQATPLQQV 414 (481)
Q Consensus 399 ~gy~~iypqatplqq~ 414 (481)
-|||+|+|. |+..++
T Consensus 55 vGyGd~~P~-t~~~r~ 69 (139)
T 3eff_K 55 VGYGDLYPV-TLWGRL 69 (139)
T ss_dssp CCCSSSCCC-SSHHHH
T ss_pred ccCCCCcCC-CcCHHH
Confidence 699999997 555554
No 87
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}
Probab=20.65 E-value=93 Score=26.19 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=24.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHHHHHHHHh
Q 011603 270 LHLFLSSNNPKSLEEAKRLAENLLDTISAE 299 (481)
Q Consensus 270 LHV~Isa~~~e~v~~Ak~LiE~LL~tV~eE 299 (481)
-||+|. .+++..++|++.++.|++.+...
T Consensus 11 ~hIli~-~~~~~~~~a~~~A~~i~~~l~~G 39 (112)
T 3gpk_A 11 GEIFLA-ATEENKPQVFANAEKIVEQLKQG 39 (112)
T ss_dssp EEEEEE-CCGGGHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEe-CChhhHHHHHHHHHHHHHHHHCC
Confidence 589998 56678899999999999998753
No 88
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=20.42 E-value=1.4e+02 Score=29.55 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=33.9
Q ss_pred eeeEEeCCCch-----hHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHH
Q 011603 225 IAARIRGPNDQ-----YINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLE 283 (481)
Q Consensus 225 ~vgrIIGP~Gs-----~lK~Iq~ETGaKI~IRGRGSg~~E~~~g~Es~EPLHV~Isa~~~e~v~ 283 (481)
++-.|+|.... .+..+.+.-|++|.+-||...+. ++ .==||.+.++|.+.+.
T Consensus 332 ~m~nilg~~~~~~~~~~~~~~~~~p~~~~~~ygk~~~~~----~r---kmGhv~~~~~~~~~~~ 388 (403)
T 3k5i_A 332 IMLNIIGGAAPDTHLQAAECALSIPNASIHLYSKGAAKP----GR---KMGHITVTAPTMHEAE 388 (403)
T ss_dssp EEEEEECCSSSSHHHHHHHHHTTSTTEEEEECCCCSCCT----TC---EEEEEEEECSSHHHHH
T ss_pred EEEEEecCCccccchhHHHHHhcCCCCEEEECCCCCCCC----CC---eeEEEEEEcCCHHHHH
Confidence 35568887543 34556667899999999854332 11 1159999999866543
No 89
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=20.14 E-value=88 Score=26.37 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHH
Q 011603 270 LHLFLSSNNPKSLEEAKRLAEN 291 (481)
Q Consensus 270 LHV~Isa~~~e~v~~Ak~LiE~ 291 (481)
|||+|.++|.+-++.|++|+|.
T Consensus 3 lyvliisndkklieearkmaek 24 (110)
T 2kpo_A 3 LYVLIISNDKKLIEEARKMAEK 24 (110)
T ss_dssp EEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEEEcCcHHHHHHHHHHHHh
Confidence 7999999999999999999974
Done!