Query 011605
Match_columns 481
No_of_seqs 148 out of 1746
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 8.8E-56 1.9E-60 391.3 31.0 371 34-473 67-437 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 5.5E-55 1.2E-59 412.1 33.5 374 35-477 98-480 (519)
3 PTZ00110 helicase; Provisional 100.0 1.7E-54 3.7E-59 431.8 38.2 386 10-471 118-510 (545)
4 PRK04837 ATP-dependent RNA hel 100.0 3.3E-53 7.1E-58 414.6 36.2 374 20-466 6-385 (423)
5 PLN00206 DEAD-box ATP-dependen 100.0 3E-53 6.6E-58 421.9 36.4 379 16-471 115-501 (518)
6 PRK04537 ATP-dependent RNA hel 100.0 5.2E-53 1.1E-57 422.4 37.8 382 22-475 9-396 (572)
7 KOG0328 Predicted ATP-dependen 100.0 2.7E-53 5.8E-58 359.9 25.6 377 18-471 23-399 (400)
8 PRK11776 ATP-dependent RNA hel 100.0 3.1E-52 6.6E-57 412.2 36.5 359 22-456 4-363 (460)
9 PRK10590 ATP-dependent RNA hel 100.0 3.6E-52 7.8E-57 409.6 35.9 359 23-455 2-365 (456)
10 PRK01297 ATP-dependent RNA hel 100.0 2.1E-51 4.5E-56 407.2 40.4 371 34-470 93-469 (475)
11 PRK11192 ATP-dependent RNA hel 100.0 7.4E-52 1.6E-56 407.2 36.7 359 23-455 2-365 (434)
12 COG0513 SrmB Superfamily II DN 100.0 2.9E-51 6.3E-56 404.6 35.6 363 22-457 29-396 (513)
13 PRK11634 ATP-dependent RNA hel 100.0 5.1E-51 1.1E-55 410.0 37.4 367 23-465 7-374 (629)
14 KOG0350 DEAD-box ATP-dependent 100.0 1.8E-51 3.8E-56 374.8 29.3 439 14-477 114-576 (620)
15 KOG0338 ATP-dependent RNA heli 100.0 3E-51 6.6E-56 373.9 28.5 383 22-476 181-569 (691)
16 PTZ00424 helicase 45; Provisio 100.0 2.7E-50 5.9E-55 393.6 35.6 354 34-456 34-388 (401)
17 KOG0333 U5 snRNP-like RNA heli 100.0 1.8E-50 3.8E-55 370.3 28.1 389 15-455 238-637 (673)
18 KOG0345 ATP-dependent RNA heli 100.0 7.4E-50 1.6E-54 361.9 31.3 357 35-455 13-376 (567)
19 KOG0326 ATP-dependent RNA heli 100.0 2.1E-50 4.5E-55 348.0 18.6 362 34-468 91-452 (459)
20 KOG0340 ATP-dependent RNA heli 100.0 1.2E-48 2.6E-53 342.0 27.8 365 34-466 13-384 (442)
21 KOG0342 ATP-dependent RNA heli 100.0 1.6E-48 3.4E-53 355.7 28.1 368 29-467 84-458 (543)
22 KOG0336 ATP-dependent RNA heli 100.0 5.5E-49 1.2E-53 350.0 22.3 380 16-471 213-598 (629)
23 KOG0343 RNA Helicase [RNA proc 100.0 1.7E-47 3.6E-52 352.6 29.5 347 35-446 76-426 (758)
24 KOG0335 ATP-dependent RNA heli 100.0 1.5E-47 3.3E-52 355.3 26.8 382 16-470 68-469 (482)
25 KOG0346 RNA helicase [RNA proc 100.0 4.6E-47 9.9E-52 340.8 25.9 380 22-473 19-448 (569)
26 KOG0339 ATP-dependent RNA heli 100.0 2.2E-46 4.8E-51 341.8 27.5 382 14-471 215-601 (731)
27 TIGR03817 DECH_helic helicase/ 100.0 7.5E-46 1.6E-50 379.9 33.6 356 35-454 21-400 (742)
28 KOG0348 ATP-dependent RNA heli 100.0 8.6E-46 1.9E-50 340.2 29.8 370 24-445 133-557 (708)
29 KOG0347 RNA helicase [RNA proc 100.0 7.6E-47 1.6E-51 348.2 20.2 383 18-469 177-598 (731)
30 TIGR00614 recQ_fam ATP-depende 100.0 4.2E-45 9.1E-50 360.5 30.1 334 45-454 6-345 (470)
31 PLN03137 ATP-dependent DNA hel 100.0 1.1E-44 2.4E-49 368.6 33.6 345 35-453 444-798 (1195)
32 KOG0332 ATP-dependent RNA heli 100.0 8.8E-46 1.9E-50 326.0 21.6 360 21-454 89-456 (477)
33 PRK11057 ATP-dependent DNA hel 100.0 2.4E-43 5.2E-48 356.8 34.6 340 35-452 9-353 (607)
34 KOG0334 RNA helicase [RNA proc 100.0 1.6E-44 3.5E-49 358.4 25.2 381 16-471 359-746 (997)
35 KOG0341 DEAD-box protein abstr 100.0 1.1E-44 2.3E-49 320.6 18.6 357 14-445 162-531 (610)
36 KOG0344 ATP-dependent RNA heli 100.0 2.1E-43 4.5E-48 329.8 24.9 395 7-469 116-519 (593)
37 TIGR01389 recQ ATP-dependent D 100.0 1.1E-42 2.3E-47 353.5 31.6 335 41-453 3-342 (591)
38 PRK02362 ski2-like helicase; P 100.0 2.1E-42 4.5E-47 358.9 31.9 336 35-442 8-397 (737)
39 KOG0327 Translation initiation 100.0 4.5E-43 9.7E-48 311.6 22.2 373 19-470 23-395 (397)
40 KOG4284 DEAD box protein [Tran 100.0 8.8E-43 1.9E-47 326.7 21.8 374 20-468 23-410 (980)
41 PRK13767 ATP-dependent helicas 100.0 2.8E-41 6.1E-46 353.2 35.1 369 34-465 17-422 (876)
42 COG0514 RecQ Superfamily II DN 100.0 4.8E-41 1E-45 323.8 28.6 338 39-455 5-350 (590)
43 COG1201 Lhr Lhr-like helicases 100.0 1E-40 2.3E-45 333.1 30.1 369 34-467 7-388 (814)
44 PRK00254 ski2-like helicase; P 100.0 3.4E-40 7.4E-45 341.5 32.2 334 35-443 8-389 (720)
45 KOG0337 ATP-dependent RNA heli 100.0 1.4E-40 3.1E-45 297.6 19.3 355 34-456 27-382 (529)
46 PRK01172 ski2-like helicase; P 100.0 3.3E-39 7.2E-44 332.9 30.1 343 35-451 8-388 (674)
47 PRK10917 ATP-dependent DNA hel 100.0 2.7E-38 5.7E-43 323.3 34.4 326 37-441 249-588 (681)
48 TIGR00580 mfd transcription-re 100.0 2.8E-38 6.1E-43 326.9 34.3 327 37-442 438-770 (926)
49 TIGR00643 recG ATP-dependent D 100.0 3.7E-38 8E-43 320.4 34.6 328 37-440 223-564 (630)
50 PRK09751 putative ATP-dependen 100.0 2.4E-37 5.1E-42 328.3 30.9 307 74-438 1-381 (1490)
51 COG1111 MPH1 ERCC4-like helica 100.0 9.4E-37 2E-41 281.0 30.3 324 48-442 13-481 (542)
52 PRK10689 transcription-repair 100.0 1.1E-36 2.3E-41 321.9 32.4 326 37-441 588-918 (1147)
53 COG1204 Superfamily II helicas 100.0 2.3E-37 5E-42 313.7 24.9 338 35-439 16-405 (766)
54 COG1202 Superfamily II helicas 100.0 3.3E-37 7.2E-42 286.2 21.7 358 13-442 180-553 (830)
55 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.3E-36 7.1E-41 302.7 28.3 327 40-439 5-388 (844)
56 KOG0952 DNA/RNA helicase MER3/ 100.0 2.6E-36 5.6E-41 297.8 22.4 374 44-481 104-527 (1230)
57 PHA02558 uvsW UvsW helicase; P 100.0 4.1E-35 8.8E-40 290.9 25.7 312 49-444 113-455 (501)
58 COG1205 Distinct helicase fami 100.0 8E-35 1.7E-39 299.5 28.0 346 35-442 55-422 (851)
59 KOG0329 ATP-dependent RNA heli 100.0 6.1E-35 1.3E-39 244.8 16.5 327 35-467 49-378 (387)
60 TIGR00603 rad25 DNA repair hel 100.0 5.9E-34 1.3E-38 283.7 25.3 313 49-446 254-611 (732)
61 TIGR01587 cas3_core CRISPR-ass 100.0 2.2E-33 4.7E-38 269.9 28.3 315 71-442 1-336 (358)
62 KOG0351 ATP-dependent DNA heli 100.0 7.7E-34 1.7E-38 289.9 23.8 340 38-454 251-604 (941)
63 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.5E-33 3.3E-38 288.9 26.1 301 66-446 14-340 (819)
64 KOG0352 ATP-dependent DNA heli 100.0 1.9E-33 4.2E-38 252.3 21.1 340 39-451 7-371 (641)
65 PHA02653 RNA helicase NPH-II; 100.0 2.6E-33 5.7E-38 280.5 24.3 321 49-447 159-519 (675)
66 PRK11664 ATP-dependent RNA hel 100.0 2.1E-33 4.6E-38 288.6 23.9 304 62-445 13-342 (812)
67 PRK14701 reverse gyrase; Provi 100.0 1.3E-32 2.8E-37 297.5 25.6 361 38-453 67-467 (1638)
68 KOG0354 DEAD-box like helicase 100.0 3.2E-32 6.8E-37 265.9 24.9 327 47-444 59-531 (746)
69 PRK13766 Hef nuclease; Provisi 100.0 1.5E-31 3.2E-36 281.5 31.6 324 48-444 13-481 (773)
70 PRK09401 reverse gyrase; Revie 100.0 8.9E-32 1.9E-36 285.3 29.3 326 46-428 77-430 (1176)
71 PRK12898 secA preprotein trans 100.0 6.9E-32 1.5E-36 265.9 24.8 353 46-444 100-588 (656)
72 KOG0951 RNA helicase BRR2, DEA 100.0 4.1E-32 8.8E-37 271.7 23.2 375 31-475 292-728 (1674)
73 COG1200 RecG RecG-like helicas 100.0 3.1E-31 6.6E-36 255.3 27.5 353 38-470 251-618 (677)
74 TIGR03714 secA2 accessory Sec 100.0 4.4E-31 9.6E-36 263.2 28.6 365 51-454 69-556 (762)
75 PRK09200 preprotein translocas 100.0 1.5E-30 3.3E-35 261.9 29.7 368 46-455 75-561 (790)
76 COG1061 SSL2 DNA or RNA helica 100.0 4E-31 8.6E-36 257.1 24.4 297 49-429 35-376 (442)
77 TIGR01054 rgy reverse gyrase. 100.0 2.7E-30 5.9E-35 274.5 31.7 317 38-413 66-408 (1171)
78 TIGR03158 cas3_cyano CRISPR-as 100.0 1.7E-30 3.7E-35 246.7 26.8 315 54-427 1-357 (357)
79 TIGR00963 secA preprotein tran 100.0 1.2E-29 2.5E-34 251.5 31.6 367 46-455 53-537 (745)
80 PRK04914 ATP-dependent helicas 100.0 3.8E-30 8.2E-35 265.5 28.2 135 317-454 478-615 (956)
81 KOG0353 ATP-dependent DNA heli 100.0 1.7E-30 3.7E-35 230.3 18.4 341 35-451 78-476 (695)
82 PRK09694 helicase Cas3; Provis 100.0 9E-29 2E-33 253.8 33.0 383 49-479 285-731 (878)
83 PRK05580 primosome assembly pr 100.0 6.4E-28 1.4E-32 246.0 29.7 322 50-443 144-550 (679)
84 KOG0349 Putative DEAD-box RNA 100.0 9.9E-29 2.1E-33 222.5 19.5 301 100-455 285-628 (725)
85 COG4098 comFA Superfamily II D 100.0 2.2E-28 4.7E-33 214.4 21.0 329 42-457 91-433 (441)
86 COG1197 Mfd Transcription-repa 100.0 1.9E-27 4.2E-32 241.8 30.1 329 36-442 580-913 (1139)
87 PRK11448 hsdR type I restricti 100.0 3.1E-28 6.7E-33 257.0 24.5 332 49-447 412-821 (1123)
88 PRK11131 ATP-dependent RNA hel 100.0 1.1E-27 2.5E-32 250.6 24.0 302 62-446 82-415 (1294)
89 TIGR00595 priA primosomal prot 100.0 4.1E-27 8.8E-32 231.7 24.4 298 73-441 1-380 (505)
90 PRK13104 secA preprotein trans 100.0 3.9E-26 8.4E-31 229.6 29.1 368 46-455 79-607 (896)
91 PLN03142 Probable chromatin-re 100.0 2.6E-26 5.6E-31 238.0 27.4 358 50-439 169-594 (1033)
92 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.1E-26 2.3E-31 244.3 24.7 321 46-446 60-408 (1283)
93 KOG0950 DNA polymerase theta/e 99.9 1.5E-26 3.2E-31 228.2 20.1 363 24-454 196-623 (1008)
94 KOG0947 Cytoplasmic exosomal R 99.9 3.1E-26 6.8E-31 224.5 20.3 317 45-442 293-723 (1248)
95 cd00268 DEADc DEAD-box helicas 99.9 8.2E-26 1.8E-30 199.5 20.7 195 35-293 6-201 (203)
96 PRK12906 secA preprotein trans 99.9 1.1E-25 2.3E-30 225.4 22.9 368 46-455 77-573 (796)
97 PRK12904 preprotein translocas 99.9 6.2E-25 1.4E-29 220.8 27.0 368 46-455 78-593 (830)
98 COG4581 Superfamily II RNA hel 99.9 2.1E-25 4.5E-30 226.9 23.4 324 41-441 111-536 (1041)
99 PRK13107 preprotein translocas 99.9 4.4E-24 9.6E-29 214.2 25.8 369 46-456 79-612 (908)
100 KOG0948 Nuclear exosomal RNA h 99.9 3.7E-25 8.1E-30 211.9 14.6 314 45-442 125-539 (1041)
101 PRK12899 secA preprotein trans 99.9 7.4E-23 1.6E-27 205.8 29.7 146 34-211 68-229 (970)
102 KOG0385 Chromatin remodeling c 99.9 5.1E-23 1.1E-27 198.1 25.9 360 49-440 166-595 (971)
103 COG4096 HsdR Type I site-speci 99.9 2.7E-23 5.8E-28 203.3 24.0 338 48-429 163-525 (875)
104 TIGR01407 dinG_rel DnaQ family 99.9 2.3E-22 4.9E-27 211.9 31.4 173 33-211 229-454 (850)
105 COG0556 UvrB Helicase subunit 99.9 2.2E-22 4.8E-27 186.9 24.5 198 266-475 386-600 (663)
106 COG1203 CRISPR-associated heli 99.9 3.2E-23 7E-28 213.7 20.1 346 49-444 194-552 (733)
107 TIGR00348 hsdR type I site-spe 99.9 5.4E-22 1.2E-26 202.6 26.9 333 50-454 238-661 (667)
108 COG1198 PriA Primosomal protei 99.9 3.1E-22 6.7E-27 199.8 21.5 334 49-450 197-611 (730)
109 COG1110 Reverse gyrase [DNA re 99.9 6E-22 1.3E-26 197.0 22.6 320 46-413 79-416 (1187)
110 COG1643 HrpA HrpA-like helicas 99.9 2.7E-22 5.8E-27 203.2 19.9 310 62-445 58-390 (845)
111 PF00270 DEAD: DEAD/DEAH box h 99.9 3.5E-22 7.7E-27 171.0 17.1 148 52-226 1-148 (169)
112 KOG0384 Chromodomain-helicase 99.9 1.5E-22 3.2E-27 204.1 15.5 374 49-445 369-814 (1373)
113 PRK07246 bifunctional ATP-depe 99.9 2.3E-20 5.1E-25 193.8 30.7 403 46-465 242-807 (820)
114 KOG0922 DEAH-box RNA helicase 99.9 8.1E-22 1.8E-26 188.6 18.0 308 62-445 59-393 (674)
115 KOG0387 Transcription-coupled 99.9 2E-21 4.3E-26 188.1 18.9 369 49-438 204-652 (923)
116 COG4889 Predicted helicase [Ge 99.9 1.7E-21 3.6E-26 189.9 16.6 370 48-459 159-618 (1518)
117 KOG0949 Predicted helicase, DE 99.9 2E-21 4.3E-26 191.5 17.0 149 47-225 509-660 (1330)
118 TIGR00631 uvrb excinuclease AB 99.9 2.4E-19 5.3E-24 181.0 31.9 124 317-444 425-555 (655)
119 PRK12900 secA preprotein trans 99.9 3.1E-20 6.8E-25 187.5 22.6 135 315-454 579-730 (1025)
120 KOG1123 RNA polymerase II tran 99.9 1.5E-20 3.3E-25 173.0 17.9 316 49-449 301-660 (776)
121 PRK12326 preprotein translocas 99.9 3E-19 6.5E-24 175.5 26.8 357 46-444 75-549 (764)
122 KOG0390 DNA repair protein, SN 99.8 3.3E-19 7.2E-24 177.1 25.3 368 49-439 237-702 (776)
123 PRK05298 excinuclease ABC subu 99.8 3.3E-18 7.2E-23 174.2 33.3 152 318-476 430-597 (652)
124 TIGR03117 cas_csf4 CRISPR-asso 99.8 2.9E-18 6.2E-23 170.3 28.4 85 55-141 2-89 (636)
125 PRK08074 bifunctional ATP-depe 99.8 3.1E-18 6.8E-23 181.3 30.4 159 47-211 255-469 (928)
126 KOG1000 Chromatin remodeling p 99.8 5.7E-19 1.2E-23 162.5 20.7 313 49-440 197-599 (689)
127 KOG0920 ATP-dependent RNA heli 99.8 2.9E-19 6.2E-24 180.6 20.6 308 68-445 187-547 (924)
128 PRK13103 secA preprotein trans 99.8 3.5E-19 7.6E-24 179.4 20.9 367 46-454 79-610 (913)
129 KOG0923 mRNA splicing factor A 99.8 9.1E-19 2E-23 166.5 18.9 302 66-443 277-607 (902)
130 KOG0389 SNF2 family DNA-depend 99.8 2.6E-18 5.5E-23 166.6 20.3 370 50-445 399-891 (941)
131 KOG0926 DEAH-box RNA helicase 99.8 1.1E-18 2.3E-23 169.1 17.2 318 61-442 263-704 (1172)
132 PRK11747 dinG ATP-dependent DN 99.8 4.4E-17 9.6E-22 167.3 29.6 90 47-140 23-120 (697)
133 PRK12903 secA preprotein trans 99.8 3.8E-18 8.2E-23 170.2 19.5 363 46-455 75-560 (925)
134 KOG0924 mRNA splicing factor A 99.8 3.7E-18 8.1E-23 162.8 18.6 295 68-442 370-697 (1042)
135 COG1199 DinG Rad3-related DNA 99.8 2.5E-17 5.4E-22 170.7 25.2 78 44-124 9-86 (654)
136 KOG0392 SNF2 family DNA-depend 99.8 1.1E-17 2.5E-22 168.8 21.3 368 49-444 974-1456(1549)
137 CHL00122 secA preprotein trans 99.8 2.1E-16 4.5E-21 158.9 26.0 130 46-209 73-208 (870)
138 KOG0951 RNA helicase BRR2, DEA 99.7 2.3E-17 5.1E-22 166.9 15.9 328 51-454 1144-1506(1674)
139 cd00079 HELICc Helicase superf 99.7 1.5E-17 3.3E-22 135.7 12.0 118 318-438 12-131 (131)
140 KOG0925 mRNA splicing factor A 99.7 3.7E-16 8.1E-21 143.9 21.3 331 21-442 24-387 (699)
141 KOG4150 Predicted ATP-dependen 99.7 1.4E-17 3E-22 155.9 12.1 342 46-445 282-643 (1034)
142 PRK12902 secA preprotein trans 99.7 1.3E-15 2.8E-20 152.9 24.1 130 46-209 82-217 (939)
143 smart00487 DEXDc DEAD-like hel 99.7 3E-16 6.5E-21 138.1 17.7 184 46-296 4-190 (201)
144 KOG0386 Chromatin remodeling c 99.7 1.3E-16 2.8E-21 158.7 15.9 372 49-453 393-847 (1157)
145 TIGR00604 rad3 DNA repair heli 99.7 1.5E-15 3.3E-20 157.4 24.3 79 46-125 6-84 (705)
146 KOG0391 SNF2 family DNA-depend 99.7 2.6E-15 5.7E-20 150.8 22.3 134 318-454 1260-1397(1958)
147 KOG0953 Mitochondrial RNA heli 99.7 7.6E-16 1.7E-20 144.2 16.3 278 72-452 194-486 (700)
148 PF00271 Helicase_C: Helicase 99.7 8.3E-17 1.8E-21 117.9 8.0 77 351-430 2-78 (78)
149 KOG0388 SNF2 family DNA-depend 99.6 1.9E-14 4.1E-19 138.3 20.8 136 316-454 1026-1164(1185)
150 PRK12901 secA preprotein trans 99.6 1.1E-14 2.4E-19 147.9 19.9 136 316-456 610-762 (1112)
151 PF04851 ResIII: Type III rest 99.6 1.8E-15 3.9E-20 131.4 9.9 147 50-213 3-162 (184)
152 KOG1002 Nucleotide excision re 99.6 7.2E-14 1.6E-18 129.3 18.8 109 333-444 639-751 (791)
153 KOG4439 RNA polymerase II tran 99.6 7E-14 1.5E-18 134.5 19.3 105 331-438 745-852 (901)
154 cd00046 DEXDc DEAD-like helica 99.6 7.2E-14 1.6E-18 115.6 16.2 121 70-215 1-121 (144)
155 smart00490 HELICc helicase sup 99.5 2.3E-14 5E-19 106.3 8.3 81 347-430 2-82 (82)
156 TIGR02562 cas3_yersinia CRISPR 99.5 1.2E-12 2.7E-17 133.8 23.0 355 50-447 408-899 (1110)
157 PRK14873 primosome assembly pr 99.5 4.4E-13 9.6E-18 135.5 19.6 105 72-208 163-268 (665)
158 PF06862 DUF1253: Protein of u 99.5 2.6E-11 5.7E-16 115.1 26.0 338 95-451 31-424 (442)
159 COG0553 HepA Superfamily II DN 99.4 7.1E-12 1.5E-16 135.6 18.2 123 318-443 692-821 (866)
160 smart00489 DEXDc3 DEAD-like he 99.4 1.8E-12 3.8E-17 119.3 11.2 78 46-124 5-84 (289)
161 smart00488 DEXDc2 DEAD-like he 99.4 1.8E-12 3.8E-17 119.3 11.2 78 46-124 5-84 (289)
162 KOG1015 Transcription regulato 99.4 1.7E-11 3.6E-16 121.9 18.0 122 319-440 1127-1273(1567)
163 PF02399 Herpes_ori_bp: Origin 99.4 1.7E-10 3.7E-15 115.5 22.8 102 331-442 281-388 (824)
164 COG0653 SecA Preprotein transl 99.3 1.9E-11 4E-16 123.0 14.1 366 46-454 77-564 (822)
165 COG0610 Type I site-specific r 99.3 2.1E-10 4.5E-15 121.5 21.6 114 69-209 273-388 (962)
166 PF07652 Flavi_DEAD: Flaviviru 99.3 5.6E-11 1.2E-15 93.9 11.9 104 69-209 4-107 (148)
167 PF00176 SNF2_N: SNF2 family N 99.2 2.7E-11 5.9E-16 113.8 8.4 130 54-209 1-146 (299)
168 KOG0921 Dosage compensation co 99.2 1.9E-10 4.2E-15 114.0 13.6 388 6-445 315-777 (1282)
169 KOG2340 Uncharacterized conser 99.2 2.7E-09 5.9E-14 100.3 20.4 380 49-451 215-677 (698)
170 PF07517 SecA_DEAD: SecA DEAD- 98.9 2.2E-08 4.8E-13 89.7 13.4 132 45-210 73-210 (266)
171 KOG1133 Helicase of the DEAD s 98.9 1.1E-06 2.4E-11 86.0 24.9 106 331-439 628-777 (821)
172 KOG0952 DNA/RNA helicase MER3/ 98.8 1.3E-09 2.9E-14 110.2 0.8 275 50-387 927-1207(1230)
173 PF13307 Helicase_C_2: Helicas 98.7 5.7E-08 1.2E-12 82.0 8.7 107 331-441 8-149 (167)
174 KOG1016 Predicted DNA helicase 98.7 2.5E-07 5.4E-12 91.0 13.2 120 332-451 719-856 (1387)
175 PRK15483 type III restriction- 98.6 3.4E-07 7.3E-12 95.0 11.5 45 385-429 501-545 (986)
176 PF13086 AAA_11: AAA domain; P 98.6 1.4E-07 3.1E-12 85.1 7.1 68 51-123 2-75 (236)
177 KOG1132 Helicase of the DEAD s 98.4 1.4E-06 3E-11 87.6 8.9 163 45-211 17-261 (945)
178 PF13872 AAA_34: P-loop contai 98.3 8.1E-06 1.8E-10 73.5 10.8 133 50-211 37-186 (303)
179 KOG1001 Helicase-like transcri 98.3 1.4E-06 3.1E-11 88.2 6.6 102 333-437 540-643 (674)
180 COG3587 Restriction endonuclea 98.3 0.0001 2.2E-09 74.4 19.0 45 384-428 482-526 (985)
181 PF02562 PhoH: PhoH-like prote 98.2 2.3E-06 5.1E-11 73.6 6.1 58 50-113 4-61 (205)
182 KOG1803 DNA helicase [Replicat 98.1 1.5E-05 3.3E-10 77.3 8.9 66 49-121 184-249 (649)
183 PF12340 DUF3638: Protein of u 98.1 5.9E-05 1.3E-09 65.5 11.5 124 45-187 19-145 (229)
184 KOG1131 RNA polymerase II tran 98.1 3.8E-05 8.3E-10 72.9 11.0 80 46-125 12-91 (755)
185 KOG1802 RNA helicase nonsense 98.1 1.1E-05 2.4E-10 78.7 7.6 86 42-138 402-487 (935)
186 TIGR00596 rad1 DNA repair prot 98.0 0.00011 2.5E-09 76.5 14.3 53 171-224 6-58 (814)
187 PF13245 AAA_19: Part of AAA d 98.0 4.5E-05 9.8E-10 54.5 7.5 52 70-121 11-62 (76)
188 PF13604 AAA_30: AAA domain; P 97.9 3E-05 6.4E-10 67.4 7.6 64 50-120 1-65 (196)
189 TIGR00376 DNA helicase, putati 97.9 8E-05 1.7E-09 76.4 10.8 69 49-124 156-224 (637)
190 smart00492 HELICc3 helicase su 97.9 9.4E-05 2E-09 60.1 8.5 72 369-440 31-136 (141)
191 PF09848 DUF2075: Uncharacteri 97.8 6.2E-05 1.3E-09 72.1 8.7 52 71-124 3-54 (352)
192 smart00491 HELICc2 helicase su 97.8 0.00011 2.4E-09 59.8 7.8 68 373-440 32-137 (142)
193 KOG0383 Predicted helicase [Ge 97.8 3E-06 6.6E-11 85.0 -1.9 83 312-398 609-696 (696)
194 PRK10536 hypothetical protein; 97.7 0.00011 2.4E-09 65.2 7.2 61 46-112 55-115 (262)
195 KOG1805 DNA replication helica 97.6 0.00085 1.8E-08 68.9 12.1 151 35-210 658-809 (1100)
196 PF00580 UvrD-helicase: UvrD/R 97.4 0.00033 7.1E-09 66.2 7.1 71 51-127 1-71 (315)
197 PRK10875 recD exonuclease V su 97.4 0.00091 2E-08 68.1 10.0 69 52-125 154-223 (615)
198 TIGR01447 recD exodeoxyribonuc 97.3 0.0013 2.8E-08 66.8 10.4 67 53-124 148-216 (586)
199 PRK10919 ATP-dependent DNA hel 97.2 0.001 2.2E-08 69.3 8.1 70 50-125 2-71 (672)
200 TIGR01448 recD_rel helicase, p 97.2 0.0023 5E-08 67.0 10.7 65 45-116 319-383 (720)
201 PRK06526 transposase; Provisio 97.2 0.0018 3.9E-08 58.5 8.4 53 22-91 68-120 (254)
202 PRK12723 flagellar biosynthesi 97.2 0.0034 7.4E-08 60.1 10.6 60 70-132 175-236 (388)
203 TIGR01075 uvrD DNA helicase II 97.2 0.0014 3.1E-08 69.0 8.9 71 49-125 3-73 (715)
204 PRK11773 uvrD DNA-dependent he 97.1 0.0017 3.7E-08 68.5 8.3 70 50-125 9-78 (721)
205 COG3421 Uncharacterized protei 97.1 0.041 8.9E-07 54.1 16.4 118 74-211 2-126 (812)
206 PRK08181 transposase; Validate 97.0 0.0033 7.2E-08 57.2 8.7 73 22-116 75-148 (269)
207 PF01695 IstB_IS21: IstB-like 97.0 0.00097 2.1E-08 56.8 5.0 44 68-116 46-89 (178)
208 PRK11054 helD DNA helicase IV; 97.0 0.0039 8.4E-08 64.6 9.6 75 46-126 192-266 (684)
209 KOG0989 Replication factor C, 96.9 0.0024 5.2E-08 57.4 6.1 36 54-89 40-77 (346)
210 PF13401 AAA_22: AAA domain; P 96.8 0.014 3.1E-07 46.9 9.8 20 69-88 4-23 (131)
211 TIGR01074 rep ATP-dependent DN 96.8 0.0064 1.4E-07 63.8 9.4 70 51-126 2-71 (664)
212 TIGR02768 TraA_Ti Ti-type conj 96.7 0.017 3.7E-07 60.8 12.2 61 50-117 352-412 (744)
213 PRK04296 thymidine kinase; Pro 96.7 0.0036 7.9E-08 54.1 6.2 36 71-110 4-39 (190)
214 PRK13889 conjugal transfer rel 96.7 0.015 3.2E-07 62.4 11.8 61 46-115 343-404 (988)
215 COG1484 DnaC DNA replication p 96.7 0.0076 1.7E-07 54.5 8.4 50 68-122 104-153 (254)
216 PF05970 PIF1: PIF1-like helic 96.6 0.0052 1.1E-07 59.1 6.7 60 51-114 2-63 (364)
217 PF13871 Helicase_C_4: Helicas 96.6 0.0098 2.1E-07 53.7 7.8 65 376-440 52-125 (278)
218 COG1875 NYN ribonuclease and A 96.5 0.0091 2E-07 55.1 6.9 67 45-115 223-290 (436)
219 PF00448 SRP54: SRP54-type pro 96.4 0.02 4.4E-07 49.6 8.8 57 72-134 4-61 (196)
220 PRK06921 hypothetical protein; 96.4 0.065 1.4E-06 48.9 12.5 38 69-109 117-154 (266)
221 KOG0298 DEAD box-containing he 96.4 0.0097 2.1E-07 63.2 7.7 99 66-187 371-483 (1394)
222 cd00009 AAA The AAA+ (ATPases 96.4 0.022 4.7E-07 46.6 8.5 19 69-87 19-37 (151)
223 TIGR01073 pcrA ATP-dependent D 96.3 0.016 3.4E-07 61.4 8.9 72 49-126 3-74 (726)
224 PRK12377 putative replication 96.3 0.045 9.7E-07 49.2 10.4 43 70-117 102-144 (248)
225 COG1419 FlhF Flagellar GTP-bin 96.3 0.023 5E-07 53.8 8.8 63 69-134 203-265 (407)
226 PRK14722 flhF flagellar biosyn 96.1 0.022 4.7E-07 54.2 7.8 24 69-92 137-160 (374)
227 cd01124 KaiC KaiC is a circadi 96.0 0.047 1E-06 47.0 9.2 48 72-124 2-49 (187)
228 PF00308 Bac_DnaA: Bacterial d 96.0 0.082 1.8E-06 46.8 10.6 38 71-110 36-73 (219)
229 PRK13826 Dtr system oriT relax 96.0 0.076 1.7E-06 57.6 12.2 74 35-116 367-440 (1102)
230 TIGR03499 FlhF flagellar biosy 96.0 0.027 5.8E-07 52.0 7.7 22 70-91 195-216 (282)
231 PRK14974 cell division protein 95.9 0.084 1.8E-06 49.7 10.7 34 72-109 143-176 (336)
232 TIGR02785 addA_Gpos recombinat 95.9 0.07 1.5E-06 59.8 11.8 69 51-126 2-70 (1232)
233 PF03354 Terminase_1: Phage Te 95.9 0.02 4.4E-07 57.3 6.8 75 53-127 1-80 (477)
234 PRK08116 hypothetical protein; 95.8 0.086 1.9E-06 48.2 10.3 41 70-115 115-155 (268)
235 PRK07952 DNA replication prote 95.7 0.052 1.1E-06 48.7 7.9 34 70-107 100-133 (244)
236 PRK05707 DNA polymerase III su 95.5 0.023 5E-07 53.5 5.4 39 50-88 3-41 (328)
237 PRK14086 dnaA chromosomal repl 95.5 0.38 8.3E-06 48.8 14.1 44 71-117 316-359 (617)
238 PRK10917 ATP-dependent DNA hel 95.5 0.085 1.8E-06 55.3 10.0 81 331-411 309-391 (681)
239 cd01120 RecA-like_NTPases RecA 95.5 0.24 5.1E-06 41.3 11.2 38 72-113 2-39 (165)
240 PF05621 TniB: Bacterial TniB 95.5 0.068 1.5E-06 48.8 7.9 17 69-85 61-77 (302)
241 COG1435 Tdk Thymidine kinase [ 95.3 0.042 9.1E-07 46.4 5.6 37 72-112 7-43 (201)
242 smart00382 AAA ATPases associa 95.3 0.039 8.5E-07 44.7 5.6 42 69-114 2-43 (148)
243 PF14617 CMS1: U3-containing 9 95.2 0.061 1.3E-06 48.0 6.7 87 100-208 125-212 (252)
244 PRK14964 DNA polymerase III su 95.2 0.068 1.5E-06 52.9 7.7 19 70-88 36-54 (491)
245 PRK14087 dnaA chromosomal repl 95.2 0.19 4.2E-06 49.7 10.9 49 70-121 142-190 (450)
246 PRK05703 flhF flagellar biosyn 95.2 0.089 1.9E-06 51.5 8.3 23 69-91 221-243 (424)
247 PRK11889 flhF flagellar biosyn 95.1 0.21 4.6E-06 47.7 10.3 35 70-108 242-276 (436)
248 PRK14873 primosome assembly pr 95.1 0.2 4.3E-06 51.9 11.1 94 316-411 170-265 (665)
249 PRK13709 conjugal transfer nic 95.1 0.2 4.3E-06 57.2 11.8 65 50-117 967-1032(1747)
250 PHA03333 putative ATPase subun 95.1 0.3 6.5E-06 49.7 11.8 72 52-127 171-242 (752)
251 PF06733 DEAD_2: DEAD_2; Inte 95.0 0.013 2.8E-07 49.9 2.0 50 162-211 109-159 (174)
252 PRK14960 DNA polymerase III su 95.0 0.059 1.3E-06 54.8 6.7 19 70-88 38-56 (702)
253 PRK11823 DNA repair protein Ra 95.0 0.13 2.8E-06 50.8 9.1 62 58-124 68-130 (446)
254 TIGR00643 recG ATP-dependent D 95.0 0.14 3E-06 53.3 9.7 81 331-411 283-365 (630)
255 PRK14956 DNA polymerase III su 95.0 0.083 1.8E-06 51.9 7.4 18 71-88 42-59 (484)
256 COG1444 Predicted P-loop ATPas 95.0 0.35 7.5E-06 50.0 12.0 84 44-131 208-291 (758)
257 TIGR00595 priA primosomal prot 94.9 0.19 4.2E-06 50.5 10.1 78 331-411 24-101 (505)
258 PF10593 Z1: Z1 domain; Inter 94.9 0.069 1.5E-06 47.7 6.3 87 360-452 111-203 (239)
259 PRK05580 primosome assembly pr 94.9 0.2 4.4E-06 52.4 10.6 78 332-412 190-267 (679)
260 PRK06893 DNA replication initi 94.9 0.18 4E-06 45.0 9.0 18 70-87 40-57 (229)
261 PRK07003 DNA polymerase III su 94.9 0.11 2.4E-06 53.6 8.4 18 71-88 40-57 (830)
262 PRK08769 DNA polymerase III su 94.9 0.092 2E-06 49.1 7.2 41 48-88 2-45 (319)
263 PRK09183 transposase/IS protei 94.8 0.82 1.8E-05 41.6 13.2 73 22-116 72-144 (259)
264 PRK05973 replicative DNA helic 94.8 0.092 2E-06 46.7 6.7 85 35-124 25-114 (237)
265 PRK06645 DNA polymerase III su 94.8 0.064 1.4E-06 53.5 6.3 20 70-89 44-63 (507)
266 TIGR02881 spore_V_K stage V sp 94.8 0.091 2E-06 48.0 6.9 20 69-88 42-61 (261)
267 PF05127 Helicase_RecD: Helica 94.7 0.0071 1.5E-07 50.9 -0.4 55 73-130 1-55 (177)
268 PRK14712 conjugal transfer nic 94.7 0.18 3.9E-06 56.8 10.0 65 50-117 835-900 (1623)
269 COG1110 Reverse gyrase [DNA re 94.7 0.13 2.9E-06 54.0 8.4 74 321-395 114-191 (1187)
270 cd01122 GP4d_helicase GP4d_hel 94.6 0.2 4.4E-06 46.0 9.0 57 62-122 23-79 (271)
271 CHL00181 cbbX CbbX; Provisiona 94.6 0.18 3.9E-06 46.6 8.4 20 69-88 59-78 (287)
272 COG1474 CDC6 Cdc6-related prot 94.5 0.23 4.9E-06 47.6 9.1 27 70-97 43-69 (366)
273 PF02456 Adeno_IVa2: Adenoviru 94.5 0.047 1E-06 49.3 4.0 39 72-115 90-131 (369)
274 COG2805 PilT Tfp pilus assembl 94.4 0.089 1.9E-06 47.6 5.6 25 72-97 128-152 (353)
275 PRK08939 primosomal protein Dn 94.4 0.17 3.6E-06 47.3 7.7 36 69-108 156-191 (306)
276 PRK00149 dnaA chromosomal repl 94.3 0.2 4.4E-06 49.8 8.7 44 70-116 149-192 (450)
277 PHA02533 17 large terminase pr 94.3 0.19 4.1E-06 50.7 8.4 71 50-126 59-129 (534)
278 PRK00771 signal recognition pa 94.2 0.34 7.4E-06 47.5 9.8 34 71-108 97-130 (437)
279 TIGR02928 orc1/cdc6 family rep 94.1 0.12 2.6E-06 49.9 6.6 26 69-95 40-65 (365)
280 PRK14958 DNA polymerase III su 94.1 0.11 2.4E-06 52.2 6.2 18 71-88 40-57 (509)
281 TIGR02760 TraI_TIGR conjugativ 94.0 0.34 7.5E-06 56.7 10.8 65 50-120 429-493 (1960)
282 PHA03368 DNA packaging termina 94.0 0.7 1.5E-05 47.0 11.4 56 69-126 254-309 (738)
283 TIGR00580 mfd transcription-re 94.0 0.23 4.9E-06 53.6 8.6 81 331-411 499-581 (926)
284 TIGR00362 DnaA chromosomal rep 93.9 0.28 6.1E-06 48.1 8.6 37 70-108 137-173 (405)
285 COG3973 Superfamily I DNA and 93.9 0.34 7.3E-06 48.2 8.7 57 69-125 226-284 (747)
286 cd01121 Sms Sms (bacterial rad 93.9 0.3 6.4E-06 46.9 8.4 62 58-124 70-132 (372)
287 PRK14723 flhF flagellar biosyn 93.7 0.22 4.8E-06 51.8 7.8 59 71-133 187-246 (767)
288 PRK06835 DNA replication prote 93.7 0.17 3.6E-06 47.7 6.4 43 69-116 183-225 (329)
289 COG4626 Phage terminase-like p 93.7 0.62 1.4E-05 46.1 10.3 78 50-127 61-144 (546)
290 PTZ00112 origin recognition co 93.7 0.63 1.4E-05 49.0 10.7 42 52-94 760-805 (1164)
291 PF06745 KaiC: KaiC; InterPro 93.7 0.12 2.6E-06 46.1 5.2 60 60-124 9-70 (226)
292 PRK13894 conjugal transfer ATP 93.6 0.21 4.5E-06 46.9 6.7 64 43-113 127-190 (319)
293 PRK09111 DNA polymerase III su 93.6 0.2 4.3E-06 51.3 7.1 21 70-90 47-67 (598)
294 cd00983 recA RecA is a bacter 93.6 0.18 3.8E-06 47.2 6.2 54 58-115 42-97 (325)
295 PRK14961 DNA polymerase III su 93.6 0.12 2.6E-06 49.7 5.3 17 72-88 41-57 (363)
296 TIGR02012 tigrfam_recA protein 93.5 0.22 4.8E-06 46.5 6.7 54 58-115 42-97 (321)
297 TIGR03877 thermo_KaiC_1 KaiC d 93.5 0.15 3.3E-06 45.8 5.6 61 59-124 10-71 (237)
298 TIGR01547 phage_term_2 phage t 93.5 0.34 7.3E-06 47.4 8.4 58 72-130 4-62 (396)
299 COG1200 RecG RecG-like helicas 93.5 0.53 1.1E-05 47.7 9.6 91 321-411 299-392 (677)
300 COG1198 PriA Primosomal protei 93.5 0.42 9.1E-06 49.7 9.2 92 315-409 226-319 (730)
301 PRK06871 DNA polymerase III su 93.4 0.11 2.4E-06 48.7 4.7 39 51-89 3-44 (325)
302 PRK14959 DNA polymerase III su 93.4 0.17 3.6E-06 51.5 6.2 20 70-89 39-58 (624)
303 PRK12727 flagellar biosynthesi 93.4 0.4 8.8E-06 47.7 8.6 23 68-90 349-371 (559)
304 PRK14962 DNA polymerase III su 93.4 0.31 6.7E-06 48.5 7.9 18 71-88 38-55 (472)
305 TIGR00767 rho transcription te 93.3 0.21 4.5E-06 47.8 6.3 22 65-86 164-185 (415)
306 PRK00411 cdc6 cell division co 93.3 0.26 5.6E-06 48.2 7.3 19 69-87 55-73 (394)
307 PRK07994 DNA polymerase III su 93.3 0.2 4.3E-06 51.5 6.5 18 72-89 41-58 (647)
308 PRK06067 flagellar accessory p 93.2 0.36 7.9E-06 43.3 7.6 61 59-124 14-75 (234)
309 PRK08691 DNA polymerase III su 93.2 0.16 3.5E-06 52.1 5.8 19 70-88 39-57 (709)
310 PRK05563 DNA polymerase III su 93.2 0.13 2.9E-06 52.3 5.2 20 70-89 39-58 (559)
311 PRK12323 DNA polymerase III su 93.1 0.31 6.6E-06 49.7 7.4 18 71-88 40-57 (700)
312 PF05876 Terminase_GpA: Phage 93.1 0.17 3.8E-06 51.4 5.9 73 49-126 15-88 (557)
313 PRK08699 DNA polymerase III su 93.1 1.2 2.5E-05 42.1 10.9 39 51-89 2-41 (325)
314 PLN03025 replication factor C 93.1 0.58 1.3E-05 44.2 9.0 19 70-88 35-53 (319)
315 PRK13833 conjugal transfer pro 93.0 0.21 4.5E-06 46.8 5.8 58 51-113 129-186 (323)
316 TIGR02784 addA_alphas double-s 93.0 0.39 8.5E-06 53.8 9.0 57 69-126 10-66 (1141)
317 COG4962 CpaF Flp pilus assembl 93.0 0.18 3.9E-06 46.7 5.2 72 36-115 143-214 (355)
318 PRK05896 DNA polymerase III su 93.0 0.23 4.9E-06 50.4 6.3 19 70-88 39-57 (605)
319 PRK07993 DNA polymerase III su 93.0 0.11 2.4E-06 49.1 4.0 39 50-88 2-43 (334)
320 PRK10689 transcription-repair 93.0 0.38 8.3E-06 53.2 8.5 79 331-409 648-728 (1147)
321 TIGR02655 circ_KaiC circadian 92.9 0.24 5.2E-06 49.7 6.5 63 57-124 250-313 (484)
322 PRK09354 recA recombinase A; P 92.9 0.33 7.2E-06 45.8 6.9 54 58-115 47-102 (349)
323 PRK12726 flagellar biosynthesi 92.9 0.31 6.6E-06 46.4 6.6 23 69-91 206-228 (407)
324 KOG0701 dsRNA-specific nucleas 92.9 0.076 1.6E-06 59.1 3.0 95 333-429 293-398 (1606)
325 PRK07764 DNA polymerase III su 92.8 0.3 6.5E-06 51.9 7.3 19 71-89 39-57 (824)
326 TIGR02760 TraI_TIGR conjugativ 92.8 0.45 9.8E-06 55.7 9.3 63 50-117 1019-1084(1960)
327 PRK06090 DNA polymerase III su 92.8 0.33 7.2E-06 45.4 6.8 39 50-88 3-44 (319)
328 TIGR02782 TrbB_P P-type conjug 92.8 0.42 9.1E-06 44.5 7.5 58 51-113 117-174 (299)
329 PRK12422 chromosomal replicati 92.8 0.56 1.2E-05 46.3 8.7 36 70-109 142-177 (445)
330 COG1222 RPT1 ATP-dependent 26S 92.8 0.44 9.5E-06 44.4 7.3 68 34-116 155-224 (406)
331 KOG0991 Replication factor C, 92.8 0.46 1E-05 41.4 6.9 18 70-87 49-66 (333)
332 COG2804 PulE Type II secretory 92.8 0.24 5.3E-06 48.4 6.0 41 52-96 243-284 (500)
333 PRK04195 replication factor C 92.8 0.43 9.2E-06 48.0 8.0 19 69-87 39-57 (482)
334 COG0593 DnaA ATPase involved i 92.8 0.76 1.7E-05 44.3 9.2 39 69-109 113-151 (408)
335 PRK14957 DNA polymerase III su 92.6 0.27 5.8E-06 49.6 6.3 18 71-88 40-57 (546)
336 COG1219 ClpX ATP-dependent pro 92.5 0.096 2.1E-06 47.7 2.7 19 69-87 97-115 (408)
337 PRK14088 dnaA chromosomal repl 92.3 1 2.2E-05 44.6 9.8 38 70-109 131-168 (440)
338 TIGR03878 thermo_KaiC_2 KaiC d 92.3 0.44 9.6E-06 43.4 6.8 38 67-108 34-71 (259)
339 PRK14955 DNA polymerase III su 92.1 0.34 7.4E-06 47.3 6.2 18 71-88 40-57 (397)
340 PRK14965 DNA polymerase III su 92.1 0.56 1.2E-05 48.1 8.0 18 71-88 40-57 (576)
341 PRK14963 DNA polymerase III su 92.1 0.56 1.2E-05 47.1 7.8 17 72-88 39-55 (504)
342 PRK14949 DNA polymerase III su 92.0 0.29 6.2E-06 51.7 5.8 17 72-88 41-57 (944)
343 PRK14952 DNA polymerase III su 91.9 0.37 8.1E-06 49.1 6.4 18 72-89 38-55 (584)
344 PRK00080 ruvB Holliday junctio 91.8 0.83 1.8E-05 43.3 8.4 18 70-87 52-69 (328)
345 PRK04328 hypothetical protein; 91.6 0.38 8.3E-06 43.6 5.6 61 59-124 12-73 (249)
346 PRK14950 DNA polymerase III su 91.6 0.37 8E-06 49.6 6.1 19 70-88 39-57 (585)
347 COG0210 UvrD Superfamily I DNA 91.5 0.46 9.9E-06 50.0 6.8 71 50-126 2-72 (655)
348 PRK14969 DNA polymerase III su 91.5 0.43 9.4E-06 48.3 6.3 18 71-88 40-57 (527)
349 KOG0739 AAA+-type ATPase [Post 91.5 1.8 3.9E-05 39.3 9.3 46 71-124 168-213 (439)
350 KOG1513 Nuclear helicase MOP-3 91.5 0.11 2.3E-06 52.9 2.0 60 379-438 851-919 (1300)
351 PRK06995 flhF flagellar biosyn 91.4 1.6 3.6E-05 43.3 10.0 22 69-90 256-277 (484)
352 PRK06964 DNA polymerase III su 91.3 0.66 1.4E-05 43.9 6.9 38 51-88 2-40 (342)
353 PRK14951 DNA polymerase III su 91.2 0.48 1E-05 48.6 6.3 17 72-88 41-57 (618)
354 PHA02544 44 clamp loader, smal 91.2 2.1 4.6E-05 40.3 10.5 17 70-86 43-60 (316)
355 TIGR02524 dot_icm_DotB Dot/Icm 91.2 0.55 1.2E-05 44.9 6.4 27 69-96 134-160 (358)
356 PRK08533 flagellar accessory p 91.0 0.53 1.2E-05 42.0 5.8 52 68-124 23-74 (230)
357 PF03969 AFG1_ATPase: AFG1-lik 91.0 2.2 4.8E-05 40.8 10.2 18 68-85 61-78 (362)
358 cd01128 rho_factor Transcripti 90.9 0.53 1.2E-05 42.4 5.7 21 65-85 12-32 (249)
359 TIGR00635 ruvB Holliday juncti 90.9 0.91 2E-05 42.6 7.6 17 70-86 31-47 (305)
360 PRK09376 rho transcription ter 90.9 0.72 1.6E-05 44.1 6.7 31 65-96 165-195 (416)
361 TIGR02397 dnaX_nterm DNA polym 90.8 1.4 3E-05 42.4 9.0 18 70-87 37-54 (355)
362 TIGR00064 ftsY signal recognit 90.8 1.4 3E-05 40.5 8.3 34 71-108 74-107 (272)
363 PRK10867 signal recognition pa 90.7 0.95 2.1E-05 44.3 7.6 57 72-134 103-161 (433)
364 PRK06731 flhF flagellar biosyn 90.7 3.5 7.6E-05 37.7 10.8 20 70-89 76-95 (270)
365 COG1074 RecB ATP-dependent exo 90.6 0.49 1.1E-05 52.7 6.2 60 68-127 15-75 (1139)
366 KOG0733 Nuclear AAA ATPase (VC 90.6 2.3 4.9E-05 42.7 9.9 107 70-280 546-659 (802)
367 PF06309 Torsin: Torsin; Inte 90.5 2.1 4.6E-05 33.7 7.9 50 74-124 58-112 (127)
368 KOG1513 Nuclear helicase MOP-3 90.4 0.35 7.7E-06 49.4 4.4 60 72-135 292-351 (1300)
369 TIGR00678 holB DNA polymerase 90.4 1.1 2.4E-05 38.5 7.2 19 70-88 15-33 (188)
370 PRK10263 DNA translocase FtsK; 90.4 2.4 5.2E-05 46.8 10.8 42 69-110 1010-1051(1355)
371 cd00544 CobU Adenosylcobinamid 90.4 2.1 4.6E-05 36.0 8.6 45 72-123 2-46 (169)
372 PF13177 DNA_pol3_delta2: DNA 90.4 1.4 3E-05 36.9 7.4 22 70-91 20-41 (162)
373 cd00984 DnaB_C DnaB helicase C 90.3 0.55 1.2E-05 42.3 5.4 46 61-109 5-50 (242)
374 cd01130 VirB11-like_ATPase Typ 90.3 0.87 1.9E-05 39.1 6.4 33 51-86 10-42 (186)
375 PRK13342 recombination factor 90.3 1.1 2.4E-05 44.1 7.8 18 70-87 37-54 (413)
376 KOG0298 DEAD box-containing he 90.3 0.57 1.2E-05 50.6 5.9 101 331-438 1220-1320(1394)
377 PF12846 AAA_10: AAA-like doma 90.3 0.4 8.7E-06 44.7 4.6 42 69-114 1-42 (304)
378 PRK10416 signal recognition pa 90.2 2.8 6.1E-05 39.4 10.1 34 71-108 116-149 (318)
379 PF03796 DnaB_C: DnaB-like hel 90.0 1.8 3.9E-05 39.4 8.6 50 58-110 8-57 (259)
380 PRK14953 DNA polymerase III su 90.0 1.1 2.4E-05 44.9 7.6 36 421-456 405-440 (486)
381 COG2255 RuvB Holliday junction 90.0 0.94 2E-05 40.9 6.2 17 70-86 53-69 (332)
382 PRK14948 DNA polymerase III su 90.0 0.84 1.8E-05 47.1 6.9 20 69-88 38-57 (620)
383 KOG0738 AAA+-type ATPase [Post 90.0 0.83 1.8E-05 43.0 6.1 40 70-117 246-285 (491)
384 KOG1807 Helicases [Replication 89.9 0.52 1.1E-05 48.1 5.1 71 49-123 377-449 (1025)
385 PRK09112 DNA polymerase III su 89.9 0.68 1.5E-05 44.1 5.8 18 71-88 47-64 (351)
386 COG0467 RAD55 RecA-superfamily 89.8 0.72 1.6E-05 42.1 5.8 55 66-125 20-74 (260)
387 TIGR02640 gas_vesic_GvpN gas v 89.8 0.27 5.8E-06 45.0 2.9 35 53-87 5-39 (262)
388 PRK12608 transcription termina 89.8 3 6.5E-05 39.8 9.8 42 53-96 118-159 (380)
389 PRK12724 flagellar biosynthesi 89.8 1.4 3E-05 42.8 7.7 20 72-91 226-245 (432)
390 PRK14721 flhF flagellar biosyn 89.8 1.5 3.3E-05 42.7 8.1 66 69-137 191-256 (420)
391 PRK14954 DNA polymerase III su 89.7 0.91 2E-05 46.7 6.8 19 70-88 39-57 (620)
392 TIGR01425 SRP54_euk signal rec 89.5 2.5 5.4E-05 41.3 9.3 58 72-136 103-162 (429)
393 PRK14701 reverse gyrase; Provi 89.4 1.5 3.2E-05 50.4 8.8 64 331-394 121-187 (1638)
394 PLN03187 meiotic recombination 89.3 0.74 1.6E-05 43.6 5.4 39 72-110 129-169 (344)
395 TIGR00416 sms DNA repair prote 89.3 1.4 3.1E-05 43.6 7.7 62 58-124 82-144 (454)
396 COG1197 Mfd Transcription-repa 89.1 2.3 5.1E-05 46.1 9.4 79 331-409 642-722 (1139)
397 TIGR02655 circ_KaiC circadian 89.0 0.95 2.1E-05 45.5 6.4 63 59-125 10-73 (484)
398 PRK10436 hypothetical protein; 89.0 0.94 2E-05 44.9 6.1 46 43-94 197-242 (462)
399 TIGR00959 ffh signal recogniti 89.0 2.3 4.9E-05 41.7 8.7 21 72-92 102-122 (428)
400 PRK13900 type IV secretion sys 88.9 0.5 1.1E-05 44.7 4.1 18 68-85 159-176 (332)
401 PRK06647 DNA polymerase III su 88.9 0.94 2E-05 46.2 6.2 18 71-88 40-57 (563)
402 COG2909 MalT ATP-dependent tra 88.8 2.2 4.7E-05 44.6 8.6 30 197-226 129-158 (894)
403 TIGR03881 KaiC_arch_4 KaiC dom 88.6 1.2 2.6E-05 39.7 6.2 61 59-124 9-70 (229)
404 PRK13851 type IV secretion sys 88.3 0.62 1.3E-05 44.2 4.3 41 68-113 161-201 (344)
405 KOG0331 ATP-dependent RNA heli 88.2 3.5 7.7E-05 41.0 9.4 75 100-202 340-414 (519)
406 cd03115 SRP The signal recogni 88.2 3.5 7.6E-05 34.8 8.5 19 72-90 3-21 (173)
407 PHA00012 I assembly protein 88.2 0.97 2.1E-05 41.8 5.2 26 72-97 4-29 (361)
408 COG0513 SrmB Superfamily II DN 88.1 2 4.4E-05 43.5 8.0 71 335-409 102-180 (513)
409 PF01443 Viral_helicase1: Vira 87.8 0.4 8.7E-06 42.9 2.6 15 72-86 1-15 (234)
410 COG3267 ExeA Type II secretory 87.6 0.92 2E-05 40.3 4.5 36 57-93 38-74 (269)
411 PRK08451 DNA polymerase III su 87.6 2.1 4.5E-05 43.2 7.6 18 71-88 38-55 (535)
412 PRK07940 DNA polymerase III su 87.6 1.1 2.3E-05 43.6 5.4 20 69-88 36-55 (394)
413 cd01125 repA Hexameric Replica 87.5 3.7 8.1E-05 36.9 8.7 55 71-126 3-65 (239)
414 TIGR02639 ClpA ATP-dependent C 87.5 3 6.5E-05 44.4 9.2 38 51-88 183-222 (731)
415 KOG1132 Helicase of the DEAD s 87.5 4.8 0.0001 42.2 10.0 109 332-441 561-722 (945)
416 cd01126 TraG_VirD4 The TraG/Tr 87.4 0.68 1.5E-05 45.0 4.1 48 71-124 1-48 (384)
417 COG3972 Superfamily I DNA and 87.4 2.4 5.2E-05 41.4 7.4 69 50-125 162-230 (660)
418 PRK06904 replicative DNA helic 87.4 6.2 0.00013 39.5 10.8 61 58-122 210-270 (472)
419 PRK06305 DNA polymerase III su 87.2 3.2 7E-05 41.2 8.7 19 70-88 40-58 (451)
420 PF03237 Terminase_6: Terminas 87.2 3.5 7.6E-05 39.7 9.1 42 73-116 1-42 (384)
421 COG0552 FtsY Signal recognitio 87.2 7.1 0.00015 36.4 10.1 57 72-134 142-199 (340)
422 cd01129 PulE-GspE PulE/GspE Th 87.1 1.5 3.2E-05 40.1 5.9 46 43-94 59-104 (264)
423 PRK08727 hypothetical protein; 87.1 5.3 0.00011 35.7 9.3 49 70-123 42-90 (233)
424 COG0470 HolB ATPase involved i 87.0 4.3 9.3E-05 38.3 9.3 20 69-88 23-43 (325)
425 PHA00350 putative assembly pro 86.9 1.4 3E-05 42.5 5.7 17 72-88 4-20 (399)
426 TIGR03600 phage_DnaB phage rep 86.8 4.8 0.0001 39.7 9.7 48 58-108 183-230 (421)
427 TIGR01054 rgy reverse gyrase. 86.6 1.7 3.7E-05 48.5 7.0 78 332-409 121-205 (1171)
428 TIGR03880 KaiC_arch_3 KaiC dom 86.6 1.8 3.8E-05 38.5 6.0 60 60-124 6-66 (224)
429 PRK07471 DNA polymerase III su 86.4 2 4.3E-05 41.3 6.5 20 70-89 42-61 (365)
430 PRK07133 DNA polymerase III su 86.4 1.9 4.1E-05 45.0 6.7 17 72-88 43-59 (725)
431 KOG0745 Putative ATP-dependent 86.4 0.55 1.2E-05 44.8 2.7 20 68-87 225-244 (564)
432 PF02534 T4SS-DNA_transf: Type 86.3 0.96 2.1E-05 45.4 4.6 49 70-124 45-93 (469)
433 PF01580 FtsK_SpoIIIE: FtsK/Sp 86.3 0.96 2.1E-05 39.6 4.1 42 69-110 38-79 (205)
434 PRK13341 recombination factor 86.2 2.5 5.5E-05 44.5 7.7 18 70-87 53-70 (725)
435 CHL00095 clpC Clp protease ATP 86.1 2.5 5.4E-05 45.6 7.8 20 69-88 200-219 (821)
436 TIGR02525 plasmid_TraJ plasmid 86.0 2 4.3E-05 41.3 6.3 26 69-95 149-174 (372)
437 TIGR00763 lon ATP-dependent pr 86.0 2.6 5.7E-05 45.1 7.9 18 69-86 347-364 (775)
438 PF01935 DUF87: Domain of unkn 86.0 1.4 3.1E-05 39.2 5.1 41 69-112 23-63 (229)
439 KOG0330 ATP-dependent RNA heli 85.9 4.4 9.5E-05 38.3 8.1 86 320-409 117-210 (476)
440 TIGR02237 recomb_radB DNA repa 85.8 1.2 2.5E-05 39.1 4.4 38 69-110 12-49 (209)
441 PF00437 T2SE: Type II/IV secr 85.8 0.68 1.5E-05 42.6 3.0 42 68-113 126-167 (270)
442 KOG2170 ATPase of the AAA+ sup 85.6 2.7 5.8E-05 38.4 6.4 23 74-97 115-137 (344)
443 cd01394 radB RadB. The archaea 85.6 1.7 3.6E-05 38.4 5.4 46 59-108 8-54 (218)
444 COG2874 FlaH Predicted ATPases 85.6 7 0.00015 33.9 8.6 34 71-108 30-63 (235)
445 PF03668 ATP_bind_2: P-loop AT 85.3 30 0.00065 31.7 13.4 28 340-370 255-282 (284)
446 PRK11034 clpA ATP-dependent Cl 85.3 2.1 4.6E-05 45.3 6.6 17 71-87 490-506 (758)
447 COG2256 MGS1 ATPase related to 85.2 3.7 8E-05 39.2 7.4 67 70-144 49-118 (436)
448 PRK08760 replicative DNA helic 85.2 6.6 0.00014 39.3 9.8 63 58-124 218-280 (476)
449 COG1111 MPH1 ERCC4-like helica 85.2 8.5 0.00019 37.8 9.9 127 327-459 54-191 (542)
450 PRK04841 transcriptional regul 85.2 4.9 0.00011 44.2 9.8 29 197-225 121-149 (903)
451 TIGR02538 type_IV_pilB type IV 85.2 1.1 2.5E-05 45.8 4.5 46 43-94 295-340 (564)
452 cd00268 DEADc DEAD-box helicas 85.2 7.6 0.00016 33.6 9.3 77 331-411 68-151 (203)
453 PF01078 Mg_chelatase: Magnesi 85.0 0.42 9.1E-06 41.3 1.1 19 68-86 21-39 (206)
454 TIGR02533 type_II_gspE general 85.0 2.2 4.7E-05 42.8 6.3 45 43-94 221-266 (486)
455 TIGR03754 conj_TOL_TraD conjug 85.0 1.7 3.7E-05 44.6 5.6 54 69-126 180-235 (643)
456 PRK14970 DNA polymerase III su 85.0 6.6 0.00014 37.9 9.6 18 70-87 40-57 (367)
457 CHL00095 clpC Clp protease ATP 85.0 2 4.2E-05 46.4 6.3 35 53-87 512-557 (821)
458 PRK09361 radB DNA repair and r 84.9 2 4.3E-05 38.2 5.5 48 59-110 12-60 (225)
459 PRK08903 DnaA regulatory inact 84.9 2.6 5.6E-05 37.5 6.2 19 69-87 42-60 (227)
460 KOG0344 ATP-dependent RNA heli 84.7 7.4 0.00016 38.8 9.4 103 77-208 365-467 (593)
461 TIGR02639 ClpA ATP-dependent C 84.6 3 6.5E-05 44.4 7.5 17 71-87 486-502 (731)
462 PRK11634 ATP-dependent RNA hel 84.6 9.8 0.00021 39.7 11.0 77 331-411 73-157 (629)
463 PRK13897 type IV secretion sys 84.5 1.1 2.5E-05 45.8 4.1 49 70-124 159-207 (606)
464 TIGR03743 SXT_TraD conjugative 84.5 2.4 5.2E-05 44.0 6.5 53 69-125 176-230 (634)
465 PF13481 AAA_25: AAA domain; P 84.4 2.3 5E-05 36.6 5.6 63 62-125 24-93 (193)
466 COG2812 DnaX DNA polymerase II 84.4 1.6 3.4E-05 43.6 4.8 22 195-216 117-138 (515)
467 PRK05642 DNA replication initi 84.3 7.9 0.00017 34.6 9.0 41 70-115 46-86 (234)
468 TIGR00609 recB exodeoxyribonuc 84.2 2.1 4.5E-05 47.7 6.3 56 69-124 9-65 (1087)
469 PRK14971 DNA polymerase III su 84.1 3.5 7.6E-05 42.7 7.5 18 71-88 41-58 (614)
470 TIGR03819 heli_sec_ATPase heli 83.9 3.1 6.7E-05 39.6 6.5 63 41-113 155-217 (340)
471 COG4098 comFA Superfamily II D 83.8 12 0.00026 34.9 9.7 95 90-212 294-388 (441)
472 PRK09302 circadian clock prote 83.7 3.2 6.9E-05 42.2 7.0 63 58-124 19-82 (509)
473 PHA02244 ATPase-like protein 83.4 1.5 3.3E-05 41.7 4.1 20 67-86 117-136 (383)
474 PRK13531 regulatory ATPase Rav 83.3 0.82 1.8E-05 45.1 2.4 34 53-86 23-56 (498)
475 PRK11776 ATP-dependent RNA hel 83.0 9.9 0.00021 38.0 10.1 75 333-411 73-155 (460)
476 PLN03186 DNA repair protein RA 83.0 3.4 7.4E-05 39.2 6.4 40 71-110 125-166 (342)
477 PF13555 AAA_29: P-loop contai 82.9 1.1 2.4E-05 30.3 2.3 17 69-85 23-39 (62)
478 TIGR02880 cbbX_cfxQ probable R 82.9 2 4.3E-05 39.8 4.7 19 69-87 58-76 (284)
479 KOG0058 Peptide exporter, ABC 82.9 0.56 1.2E-05 47.9 1.1 69 47-119 472-541 (716)
480 KOG0744 AAA+-type ATPase [Post 82.8 12 0.00027 34.7 9.4 65 70-135 178-255 (423)
481 PF00158 Sigma54_activat: Sigm 82.6 2.5 5.4E-05 35.6 4.8 18 69-86 22-39 (168)
482 PRK08840 replicative DNA helic 82.5 14 0.0003 36.9 10.7 47 59-108 207-253 (464)
483 PF07728 AAA_5: AAA domain (dy 82.5 0.93 2E-05 36.7 2.2 17 71-87 1-17 (139)
484 PF13207 AAA_17: AAA domain; P 82.4 1 2.3E-05 35.3 2.4 16 72-87 2-17 (121)
485 TIGR02688 conserved hypothetic 82.3 2.4 5.2E-05 41.1 5.0 21 67-87 207-227 (449)
486 COG1674 FtsK DNA segregation A 82.3 20 0.00043 39.1 12.6 42 68-109 529-570 (858)
487 PRK12898 secA preprotein trans 82.3 10 0.00022 39.3 9.8 69 330-405 142-211 (656)
488 TIGR00665 DnaB replicative DNA 82.2 8.6 0.00019 38.1 9.3 49 58-109 184-232 (434)
489 KOG0737 AAA+-type ATPase [Post 82.0 7.4 0.00016 36.7 7.9 18 69-86 127-144 (386)
490 KOG2228 Origin recognition com 82.0 9.6 0.00021 35.6 8.4 21 68-88 48-68 (408)
491 PF00004 AAA: ATPase family as 81.9 1.3 2.8E-05 35.2 2.8 15 72-86 1-15 (132)
492 cd01131 PilT Pilus retraction 81.7 1.2 2.6E-05 38.7 2.7 23 72-95 4-26 (198)
493 PF13191 AAA_16: AAA ATPase do 81.7 1.3 2.8E-05 37.8 2.9 44 53-97 6-51 (185)
494 cd01127 TrwB Bacterial conjuga 81.7 1.9 4E-05 42.4 4.3 44 69-116 42-85 (410)
495 TIGR03420 DnaA_homol_Hda DnaA 81.7 2.3 5E-05 37.7 4.6 20 69-88 38-57 (226)
496 PRK06321 replicative DNA helic 81.6 21 0.00045 35.8 11.5 48 58-108 215-262 (472)
497 PRK07399 DNA polymerase III su 81.5 7 0.00015 36.7 7.8 19 70-88 27-45 (314)
498 PHA03372 DNA packaging termina 81.3 16 0.00034 37.2 10.3 54 69-124 202-255 (668)
499 PRK08506 replicative DNA helic 81.3 9.2 0.0002 38.3 9.0 59 58-121 181-239 (472)
500 PRK09302 circadian clock prote 81.3 3.9 8.4E-05 41.5 6.5 62 58-124 261-323 (509)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-56 Score=391.28 Aligned_cols=371 Identities=35% Similarity=0.543 Sum_probs=335.2
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
++.|++.+++++.|+..|+++|.++++.++. |+++|..|.||||||.+|++|+++.+...+ ..+.++|++||++|
T Consensus 67 gv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p-~~~~~lVLtPtREL 141 (476)
T KOG0330|consen 67 GVHPELLEACQELGWKKPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEP-KLFFALVLTPTREL 141 (476)
T ss_pred CcCHHHHHHHHHhCcCCCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCC-CCceEEEecCcHHH
Confidence 5999999999999999999999999888776 999999999999999999999999999874 45799999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCc
Q 011605 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
+.|+.+.++.++...|+.+..+.|+........++. ..++|+|+||+.|++++++.+.+
T Consensus 142 A~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~---------------------kkPhilVaTPGrL~dhl~~Tkgf 200 (476)
T KOG0330|consen 142 AQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLS---------------------KKPHILVATPGRLWDHLENTKGF 200 (476)
T ss_pred HHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhh---------------------cCCCEEEeCcHHHHHHHHhccCc
Confidence 999999999999999999999999998776655544 45699999999999999988889
Q ss_pred ccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeec
Q 011605 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 273 (481)
++..++++|+|||+.+++..|...+..|+..++.. -+.+++|
T Consensus 201 ~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~e--------------------------------------rqt~Lfs 242 (476)
T KOG0330|consen 201 SLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRE--------------------------------------RQTFLFS 242 (476)
T ss_pred cHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCcc--------------------------------------ceEEEEE
Confidence 99999999999999999999999999999998643 3789999
Q ss_pred eeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHh
Q 011605 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~ 353 (481)
||.+.....+....+.+|..+..+. .+.+.......+...+...|..+|..++....+..+||||++...+..++-.|.
T Consensus 243 ATMt~kv~kL~rasl~~p~~v~~s~-ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~ 321 (476)
T KOG0330|consen 243 ATMTKKVRKLQRASLDNPVKVAVSS-KYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLR 321 (476)
T ss_pred eecchhhHHHHhhccCCCeEEeccc-hhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHH
Confidence 9999999999988888887765543 334445556667778888999999999999989999999999999999999999
Q ss_pred hccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCc
Q 011605 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g 433 (481)
.+| +.+..+||.|+...|.-.++.|++|.++|||||++.++|+|+|.+++||+||.|.+..+|+||+||.+|.|+.|
T Consensus 322 ~lg---~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG 398 (476)
T KOG0330|consen 322 NLG---FQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSG 398 (476)
T ss_pred hcC---cceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCc
Confidence 888 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhhhhh
Q 011605 434 RCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLR 473 (481)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (481)
.++.+++-.|.+.+.+|+..+.+ .++..+++.+.+-.+.
T Consensus 399 ~~ItlVtqyDve~~qrIE~~~gk-kl~~~~~~~~~~~~l~ 437 (476)
T KOG0330|consen 399 KAITLVTQYDVELVQRIEHALGK-KLPEYKVDKNEVMSLN 437 (476)
T ss_pred ceEEEEehhhhHHHHHHHHHHhc-CCCccCcchHHHHHHH
Confidence 99999999999999999998855 5666677776665554
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-55 Score=412.12 Aligned_cols=374 Identities=32% Similarity=0.501 Sum_probs=334.5
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHh-----ccCCccEEEEcc
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLP 109 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~-----~~~~~~~lil~P 109 (481)
|+.+....++..||..|+++|.+.|+.++. |+|++..+.||||||++|++|++..+... ...+|++||++|
T Consensus 98 ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~P 173 (519)
T KOG0331|consen 98 LSEELMKALKEQGFEKPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAP 173 (519)
T ss_pred ccHHHHHHHHhcCCCCCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcC
Confidence 889999999999999999999999888876 99999999999999999999999998862 345789999999
Q ss_pred cHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhc
Q 011605 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (481)
Q Consensus 110 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~ 189 (481)
|++|+.|+...+..++..+++++.+++|+.++..+... +.++.+|+|+||+++.++++.
T Consensus 174 TRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~---------------------l~~gvdiviaTPGRl~d~le~ 232 (519)
T KOG0331|consen 174 TRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRD---------------------LERGVDVVIATPGRLIDLLEE 232 (519)
T ss_pred cHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHH---------------------HhcCCcEEEeCChHHHHHHHc
Confidence 99999999999999999989999999999998777543 457789999999999999998
Q ss_pred CCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceee
Q 011605 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (481)
Q Consensus 190 ~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (481)
....++++.++|+|||+.|++.+|...++.|+..+.... -|+
T Consensus 233 -g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~-------------------------------------rQt 274 (519)
T KOG0331|consen 233 -GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPD-------------------------------------RQT 274 (519)
T ss_pred -CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCc-------------------------------------ccE
Confidence 447899999999999999999999999999998884322 278
Q ss_pred eeeceeeccCchhhhcccccCCceeecCCc-cccCcccccccccccCCCchHHHHHHHHHhc---CCCeEEEEecchhhH
Q 011605 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSL---GEEKCIVFTSSVEST 345 (481)
Q Consensus 270 v~~sat~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~lVf~~s~~~~ 345 (481)
+++|||.+.....++..++.++..+..... .......+..+...+....|...+..++... ..+|+||||++...|
T Consensus 275 lm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~ 354 (519)
T KOG0331|consen 275 LMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTC 354 (519)
T ss_pred EEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhH
Confidence 999999999999999999998887766644 4445566666777777778888888888766 467999999999999
Q ss_pred HHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhh
Q 011605 346 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 425 (481)
Q Consensus 346 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR 425 (481)
++++..++..+ +++..+||+.+..+|+.+++.|++|++.|||||+++++|+|+|++++||+|++|.+..+|+||+||
T Consensus 355 ~~l~~~l~~~~---~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGR 431 (519)
T KOG0331|consen 355 DELARNLRRKG---WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGR 431 (519)
T ss_pred HHHHHHHHhcC---cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCc
Confidence 99999999866 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhhhhhcccc
Q 011605 426 TARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 477 (481)
Q Consensus 426 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (481)
.||.|+.|.+++|+...+......+.+.+...+ +.+|+++.++-.....
T Consensus 432 TGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~---q~v~~~l~~~~~~~~~ 480 (519)
T KOG0331|consen 432 TGRAGKKGTAITFFTSDNAKLARELIKVLREAG---QTVPPDLLEYARVSGS 480 (519)
T ss_pred cccCCCCceEEEEEeHHHHHHHHHHHHHHHHcc---CCCChHHHHHHhhccc
Confidence 999999999999999999999999999998888 8889888887655443
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.7e-54 Score=431.80 Aligned_cols=386 Identities=27% Similarity=0.443 Sum_probs=320.3
Q ss_pred CCcccccCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHH
Q 011605 10 PVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~ 89 (481)
.++.....|.+..+|+++. +++.+.+.+..+||..|+++|.++|+.++. ++++++++|||+|||++|++|
T Consensus 118 ~~~~g~~~p~p~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP 187 (545)
T PTZ00110 118 TIIAGENVPKPVVSFEYTS------FPDYILKSLKNAGFTEPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLP 187 (545)
T ss_pred EEecCCCCCcccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHH
Confidence 3334456678888899885 999999999999999999999999999886 899999999999999999999
Q ss_pred HHHHHHHhc----cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhH
Q 011605 90 IVQTLSNRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165 (481)
Q Consensus 90 ~~~~l~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (481)
++..+.... ..++.+|||+||++|+.|+.+.+..++...++.+..++|+.........
T Consensus 188 ~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~------------------ 249 (545)
T PTZ00110 188 AIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYA------------------ 249 (545)
T ss_pred HHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHH------------------
Confidence 988776532 2467899999999999999999999988888888888888876544332
Q ss_pred HHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhccccccccccccccccccccc
Q 011605 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 245 (481)
Q Consensus 166 ~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (481)
+..+++|+|+||++|.+++... ...++++++||+||||++++.+|...+..++..+.
T Consensus 250 ---l~~~~~IlVaTPgrL~d~l~~~-~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~------------------- 306 (545)
T PTZ00110 250 ---LRRGVEILIACPGRLIDFLESN-VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------------------- 306 (545)
T ss_pred ---HHcCCCEEEECHHHHHHHHHcC-CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC-------------------
Confidence 3356799999999999998763 35688999999999999999999988888887653
Q ss_pred chhhhhccccccccCCCCCcceeeeeeceeeccCchhhhccccc-CCceeecCCccccCcccccccccccCCCchHHHHH
Q 011605 246 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 324 (481)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 324 (481)
+..+.+++|||++.....+....+. .+..+............+...........|...+.
T Consensus 307 -------------------~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~ 367 (545)
T PTZ00110 307 -------------------PDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLK 367 (545)
T ss_pred -------------------CCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHH
Confidence 2347899999998776666655553 34433322222122222333333444556777777
Q ss_pred HHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCC
Q 011605 325 ALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 402 (481)
Q Consensus 325 ~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~ 402 (481)
.++... ...++||||++.+.|+.+++.|...+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 368 ~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g---~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~ 444 (545)
T PTZ00110 368 MLLQRIMRDGDKILIFVETKKGADFLTKELRLDG---WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVK 444 (545)
T ss_pred HHHHHhcccCCeEEEEecChHHHHHHHHHHHHcC---CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcc
Confidence 777665 46799999999999999999998766 7889999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhhh
Q 011605 403 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 471 (481)
Q Consensus 403 ~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (481)
++++||+++.|.+...|+||+||+||.|+.|.+++|++..+...+..+++.+.... +.+|+.+.++
T Consensus 445 ~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~---q~vp~~l~~~ 510 (545)
T PTZ00110 445 DVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAK---QPVPPELEKL 510 (545)
T ss_pred cCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHcc---CCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887 7888887766
No 4
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.3e-53 Score=414.64 Aligned_cols=374 Identities=27% Similarity=0.425 Sum_probs=306.1
Q ss_pred CCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc-
Q 011605 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA- 98 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~- 98 (481)
...+|++++ |++.+.+++..+||..|+++|.++++.++. |+|+++.||||+|||++|+++++..+....
T Consensus 6 ~~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~ 75 (423)
T PRK04837 6 TEQKFSDFA------LHPQVVEALEKKGFHNCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPA 75 (423)
T ss_pred CCCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhccc
Confidence 334566664 999999999999999999999999999886 899999999999999999999998886532
Q ss_pred -----cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCC
Q 011605 99 -----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (481)
Q Consensus 99 -----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (481)
..++++||++||++|+.|+.+.+..++...++.+..+.|+......... +..++
T Consensus 76 ~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---------------------l~~~~ 134 (423)
T PRK04837 76 PEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV---------------------LESGV 134 (423)
T ss_pred ccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---------------------hcCCC
Confidence 2346899999999999999999999998889999999988765544322 33567
Q ss_pred cEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhcc
Q 011605 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253 (481)
Q Consensus 174 ~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (481)
+|+|+||+.+.+++.. ..+.+++++++|+||||++.+.+|...+..++.......
T Consensus 135 ~IlV~TP~~l~~~l~~-~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~------------------------ 189 (423)
T PRK04837 135 DILIGTTGRLIDYAKQ-NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPAN------------------------ 189 (423)
T ss_pred CEEEECHHHHHHHHHc-CCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCcc------------------------
Confidence 9999999999998876 346789999999999999999999888888876653211
Q ss_pred ccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCC
Q 011605 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE 333 (481)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 333 (481)
..+.+++|||+...........+.++..+....... ....+...........|...+..++......
T Consensus 190 ------------~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~ 256 (423)
T PRK04837 190 ------------QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK-TGHRIKEELFYPSNEEKMRLLQTLIEEEWPD 256 (423)
T ss_pred ------------ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc-CCCceeEEEEeCCHHHHHHHHHHHHHhcCCC
Confidence 124688999998777776666666665543332221 1122222223333455677777777776778
Q ss_pred eEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCC
Q 011605 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (481)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~ 413 (481)
++||||++...|+.+++.|...+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|
T Consensus 257 ~~lVF~~t~~~~~~l~~~L~~~g---~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P 333 (423)
T PRK04837 257 RAIIFANTKHRCEEIWGHLAADG---HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLP 333 (423)
T ss_pred eEEEEECCHHHHHHHHHHHHhCC---CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCC
Confidence 99999999999999999998776 889999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCc
Q 011605 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 466 (481)
Q Consensus 414 ~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (481)
.+...|+||+||+||.|+.|.+++|+...+...+..+.+.+. ...+..+++.
T Consensus 334 ~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~ 385 (423)
T PRK04837 334 DDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIG-HSIPVSKYDS 385 (423)
T ss_pred CchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhC-CCCCCccCCh
Confidence 999999999999999999999999999999888888877764 3344444433
No 5
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3e-53 Score=421.92 Aligned_cols=379 Identities=26% Similarity=0.458 Sum_probs=314.1
Q ss_pred cCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 011605 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~ 95 (481)
..|.+..+|+++. |++.+.+.+..+||..|+++|.++++.++. |+++++.+|||+|||++|++|++..+.
T Consensus 115 ~~p~pi~~f~~~~------l~~~l~~~L~~~g~~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~ 184 (518)
T PLN00206 115 AVPPPILSFSSCG------LPPKLLLNLETAGYEFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCC 184 (518)
T ss_pred CCCchhcCHHhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHH
Confidence 4567778888885 999999999999999999999999999886 899999999999999999999988775
Q ss_pred Hh------ccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhh
Q 011605 96 NR------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169 (481)
Q Consensus 96 ~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (481)
.. ...++++||++||++|+.|+.+.++.+....++.+..+.|+........ .+
T Consensus 185 ~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~---------------------~l 243 (518)
T PLN00206 185 TIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLY---------------------RI 243 (518)
T ss_pred hhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHH---------------------Hh
Confidence 31 1256789999999999999999999998877888888888776554432 23
Q ss_pred cCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhh
Q 011605 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (481)
Q Consensus 170 ~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (481)
..+++|+|+||+.+.+++.+. ...++++++||+||||++++++|...+..++..+
T Consensus 244 ~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l------------------------ 298 (518)
T PLN00206 244 QQGVELIVGTPGRLIDLLSKH-DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL------------------------ 298 (518)
T ss_pred cCCCCEEEECHHHHHHHHHcC-CccchheeEEEeecHHHHhhcchHHHHHHHHHhC------------------------
Confidence 456799999999999998874 4678999999999999999999988887777654
Q ss_pred hhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHh
Q 011605 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329 (481)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 329 (481)
+..+++++|||+......+......++..+........ ...+...........+...+.+++..
T Consensus 299 ---------------~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~-~~~v~q~~~~~~~~~k~~~l~~~l~~ 362 (518)
T PLN00206 299 ---------------SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRP-NKAVKQLAIWVETKQKKQKLFDILKS 362 (518)
T ss_pred ---------------CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCC-CcceeEEEEeccchhHHHHHHHHHHh
Confidence 22378999999988877777766666665544332211 12223333334445566667777655
Q ss_pred cC--CCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEE
Q 011605 330 LG--EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407 (481)
Q Consensus 330 ~~--~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~V 407 (481)
.. ..++||||++...++.+++.|.... +..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 363 ~~~~~~~~iVFv~s~~~a~~l~~~L~~~~--g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~V 440 (518)
T PLN00206 363 KQHFKPPAVVFVSSRLGADLLANAITVVT--GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQV 440 (518)
T ss_pred hcccCCCEEEEcCCchhHHHHHHHHhhcc--CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEE
Confidence 42 3689999999999999999997531 2778899999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhhh
Q 011605 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 471 (481)
Q Consensus 408 i~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (481)
|+|++|.+..+|+||+||+||.|..|.+++|+...+...+..+.+.++..+ +.+|+++.++
T Consensus 441 I~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~---~~vp~~l~~~ 501 (518)
T PLN00206 441 IIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSG---AAIPRELANS 501 (518)
T ss_pred EEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcC---CCCCHHHHhC
Confidence 999999999999999999999999999999999999999999999998877 7788888765
No 6
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.2e-53 Score=422.38 Aligned_cols=382 Identities=26% Similarity=0.412 Sum_probs=314.5
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc---
Q 011605 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--- 98 (481)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~--- 98 (481)
.+|+++. |++.+.+.|.++||..|+++|.++++.++. ++|+++.+|||+|||++|+++++..+....
T Consensus 9 ~~f~~l~------l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~ 78 (572)
T PRK04537 9 LTFSSFD------LHPALLAGLESAGFTRCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA 78 (572)
T ss_pred CChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc
Confidence 4577764 999999999999999999999999999886 999999999999999999999998886531
Q ss_pred ---cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcE
Q 011605 99 ---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175 (481)
Q Consensus 99 ---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 175 (481)
...+++||++||++|+.|+.+.+.+++...++.+..++|+......... +..+++|
T Consensus 79 ~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~---------------------l~~~~dI 137 (572)
T PRK04537 79 DRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL---------------------LQQGVDV 137 (572)
T ss_pred ccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---------------------HhCCCCE
Confidence 1246899999999999999999999998889999999998876554322 2346799
Q ss_pred EEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccc
Q 011605 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (481)
Q Consensus 176 li~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (481)
+|+||++|++++.....+.+..+++|||||||++++.+|...+..++..+...
T Consensus 138 iV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~--------------------------- 190 (572)
T PRK04537 138 IIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER--------------------------- 190 (572)
T ss_pred EEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc---------------------------
Confidence 99999999999877555678889999999999999999988888887765421
Q ss_pred ccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeE
Q 011605 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335 (481)
Q Consensus 256 ~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 335 (481)
...+++++|||+...........+..+..+....... ....+...........|...+..++......++
T Consensus 191 ---------~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~-~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~ 260 (572)
T PRK04537 191 ---------GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETI-TAARVRQRIYFPADEEKQTLLLGLLSRSEGART 260 (572)
T ss_pred ---------cCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccc-cccceeEEEEecCHHHHHHHHHHHHhcccCCcE
Confidence 1237899999998877777666666654433222221 122233334444556677777888877778899
Q ss_pred EEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCC
Q 011605 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415 (481)
Q Consensus 336 lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s 415 (481)
||||++...++.+++.|.+.+ +.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+|+.|.+
T Consensus 261 LVF~nt~~~ae~l~~~L~~~g---~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s 337 (572)
T PRK04537 261 MVFVNTKAFVERVARTLERHG---YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFD 337 (572)
T ss_pred EEEeCCHHHHHHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCC
Confidence 999999999999999998876 78999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhhhhhcc
Q 011605 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPV 475 (481)
Q Consensus 416 ~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (481)
...|+||+||+||.|+.|.+++|+...+...+..+.+.+. ...+...+..+++..+.+.
T Consensus 338 ~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~-~~~~~~~~~~~~~~~~~~~ 396 (572)
T PRK04537 338 AEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIE-QKIPVEPVTAELLTPLPRP 396 (572)
T ss_pred HHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHc-CCCCccccChhhccccccc
Confidence 9999999999999999999999999998888888887764 4445555555555544443
No 7
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-53 Score=359.89 Aligned_cols=377 Identities=23% Similarity=0.416 Sum_probs=331.4
Q ss_pred CCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHh
Q 011605 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (481)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~ 97 (481)
-....+|++.. |+.++++.+.++||..|+.+|+.|+..++. |+++++.+..|+|||.++...++..+.-+
T Consensus 23 ~~v~~~F~~Mg------l~edlLrgiY~yGfekPS~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~ 92 (400)
T KOG0328|consen 23 VKVIPTFDDMG------LKEDLLRGIYAYGFEKPSAIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDIS 92 (400)
T ss_pred cccccchhhcC------chHHHHHHHHHhccCCchHHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecccc
Confidence 34456778875 999999999999999999999999998886 99999999999999999888788776654
Q ss_pred ccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEE
Q 011605 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (481)
Q Consensus 98 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili 177 (481)
.+..+++|++||++|+.|..+.+..++...++.+..+.|+.+..+....+ .-+.+++.
T Consensus 93 -~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkl---------------------d~G~hvVs 150 (400)
T KOG0328|consen 93 -VRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKL---------------------DYGQHVVS 150 (400)
T ss_pred -cceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhh---------------------cccceEee
Confidence 34568999999999999999999999999999999999998876664332 35679999
Q ss_pred eCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccccc
Q 011605 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (481)
Q Consensus 178 ~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (481)
+||+++++++++ +.+.-+.+.++|+||++.|++.+|..++-.+++.++
T Consensus 151 GtPGrv~dmikr-~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp------------------------------- 198 (400)
T KOG0328|consen 151 GTPGRVLDMIKR-RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLP------------------------------- 198 (400)
T ss_pred CCCchHHHHHHh-ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCC-------------------------------
Confidence 999999999887 446678899999999999999999999988888774
Q ss_pred ccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEE
Q 011605 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337 (481)
Q Consensus 258 ~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lV 337 (481)
|..|++++|||++....+....++.+|+.+........+...-..|......++|+..|-.+.....-.+++|
T Consensus 199 -------~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavI 271 (400)
T KOG0328|consen 199 -------PGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVI 271 (400)
T ss_pred -------CCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEE
Confidence 4669999999999999999999999999887777666654444444455556679999999998888889999
Q ss_pred EecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChh
Q 011605 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (481)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~ 417 (481)
||++......+.+.+.+.. +.+..+||.|+.+||+++++.|++|+.+||++|+..++|+|+|.+++||+|++|.+..
T Consensus 272 FcnTk~kVdwLtekm~~~n---ftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre 348 (400)
T KOG0328|consen 272 FCNTKRKVDWLTEKMREAN---FTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRE 348 (400)
T ss_pred EecccchhhHHHHHHHhhC---ceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHH
Confidence 9999999999999999876 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhhh
Q 011605 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 471 (481)
Q Consensus 418 ~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (481)
.|+||+||.||.|++|.++-|+...|...++.+++.+.-.- .++|..+++.
T Consensus 349 ~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i---~emp~nvad~ 399 (400)
T KOG0328|consen 349 LYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQI---DEMPMNVADL 399 (400)
T ss_pred HHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhc---ccccchhhhc
Confidence 99999999999999999999999999999999999986543 6777766543
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.1e-52 Score=412.23 Aligned_cols=359 Identities=27% Similarity=0.423 Sum_probs=306.7
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCC
Q 011605 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (481)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~ 101 (481)
++|.++. |++.+.+++..+||..|+++|.++++.++. ++++++++|||+|||++|+++++..+... ...
T Consensus 4 ~~f~~l~------l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~-~~~ 72 (460)
T PRK11776 4 TAFSTLP------LPPALLANLNELGYTEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVK-RFR 72 (460)
T ss_pred CChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhc-cCC
Confidence 4577775 999999999999999999999999999886 89999999999999999999999988654 235
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCc
Q 011605 102 LRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~ 180 (481)
.+++|++||++|+.|+.++++.++... ++.+..++|+.+...+... +..+++|+|+||
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~---------------------l~~~~~IvV~Tp 131 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS---------------------LEHGAHIIVGTP 131 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHH---------------------hcCCCCEEEECh
Confidence 589999999999999999999987654 6888889998876555332 235679999999
Q ss_pred hHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccC
Q 011605 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
+.+.+++.+ ....+++++++|+||||++++.+|...+..++..+..
T Consensus 132 ~rl~~~l~~-~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~--------------------------------- 177 (460)
T PRK11776 132 GRILDHLRK-GTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA--------------------------------- 177 (460)
T ss_pred HHHHHHHHc-CCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc---------------------------------
Confidence 999999876 3467889999999999999999998888888877642
Q ss_pred CCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEec
Q 011605 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (481)
Q Consensus 261 ~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~ 340 (481)
..+.+++|||++.....+....+.++..+....... ...+..+........|...+..++......++||||+
T Consensus 178 -----~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~ 250 (460)
T PRK11776 178 -----RRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHD--LPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCN 250 (460)
T ss_pred -----ccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCC--CCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEEC
Confidence 337899999998888887777777776554433221 1223444444555568888888888877889999999
Q ss_pred chhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHH
Q 011605 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (481)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~ 420 (481)
+...++.+++.|.+.+ ..+..+||+++..+|+.+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+
T Consensus 251 t~~~~~~l~~~L~~~~---~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yi 327 (460)
T PRK11776 251 TKKECQEVADALNAQG---FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHV 327 (460)
T ss_pred CHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhh
Confidence 9999999999999877 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcC
Q 011605 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (481)
Q Consensus 421 Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (481)
||+||+||.|+.|.+++++.+.+...+..+.+.+..
T Consensus 328 qR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 328 HRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred hhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999999999999999999999888888877643
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.6e-52 Score=409.63 Aligned_cols=359 Identities=31% Similarity=0.482 Sum_probs=299.2
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhcc---
Q 011605 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--- 99 (481)
Q Consensus 23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~--- 99 (481)
+|+++. |++.+.+.+.++||..|+++|.++++.++. ++|+++.+|||+|||++|++|++..+.....
T Consensus 2 ~f~~l~------l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~ 71 (456)
T PRK10590 2 SFDSLG------LSPDILRAVAEQGYREPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAK 71 (456)
T ss_pred CHHHcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccc
Confidence 466664 999999999999999999999999999886 8999999999999999999999998865421
Q ss_pred --CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEE
Q 011605 100 --RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (481)
Q Consensus 100 --~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili 177 (481)
...++||++||++|+.|+.+.++.++...++.+..+.|+.+....... +..+++|+|
T Consensus 72 ~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---------------------l~~~~~IiV 130 (456)
T PRK10590 72 GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---------------------LRGGVDVLV 130 (456)
T ss_pred cCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---------------------HcCCCcEEE
Confidence 234799999999999999999999988888898889988876554322 235679999
Q ss_pred eCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccccc
Q 011605 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (481)
Q Consensus 178 ~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (481)
+||+.+.+++.. ....++++++|||||||+++++++...+..++..+..
T Consensus 131 ~TP~rL~~~~~~-~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~------------------------------ 179 (456)
T PRK10590 131 ATPGRLLDLEHQ-NAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPA------------------------------ 179 (456)
T ss_pred EChHHHHHHHHc-CCcccccceEEEeecHHHHhccccHHHHHHHHHhCCc------------------------------
Confidence 999999998776 3357889999999999999998888777777665532
Q ss_pred ccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEE
Q 011605 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337 (481)
Q Consensus 258 ~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lV 337 (481)
..+.+++|||+......+....+.++..+........ ...+..+........+...+..++......++||
T Consensus 180 --------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~-~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lV 250 (456)
T PRK10590 180 --------KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTA-SEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLV 250 (456)
T ss_pred --------cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccccc-ccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEE
Confidence 2378999999988777777666666654433222211 2223333334444556666677776666779999
Q ss_pred EecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChh
Q 011605 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (481)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~ 417 (481)
||++...++.+++.|...+ +.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|+.|.+..
T Consensus 251 F~~t~~~~~~l~~~L~~~g---~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~ 327 (456)
T PRK10590 251 FTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPE 327 (456)
T ss_pred EcCcHHHHHHHHHHHHHCC---CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHH
Confidence 9999999999999998776 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhc
Q 011605 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 418 ~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
+|+||+||+||.|..|.+++++...+...+..+++.+.
T Consensus 328 ~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~ 365 (456)
T PRK10590 328 DYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLK 365 (456)
T ss_pred HhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999888764
No 10
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-51 Score=407.17 Aligned_cols=371 Identities=29% Similarity=0.424 Sum_probs=303.8
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhcc------CCccEEEE
Q 011605 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV------RCLRALVV 107 (481)
Q Consensus 34 ~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~------~~~~~lil 107 (481)
+|++.+.+++.++||..|+++|.++++.++. |+|+++.+|||+|||++|+++++..+..... ..+++||+
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil 168 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALII 168 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEE
Confidence 4999999999999999999999999999876 8999999999999999999999998876531 14689999
Q ss_pred cccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHH
Q 011605 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (481)
Q Consensus 108 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l 187 (481)
+||++|+.|+.+.++.++...++.+..++|+.+.......+. ...++|+|+||++|..++
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~--------------------~~~~~Iiv~TP~~Ll~~~ 228 (475)
T PRK01297 169 APTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE--------------------ARFCDILVATPGRLLDFN 228 (475)
T ss_pred eCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHh--------------------CCCCCEEEECHHHHHHHH
Confidence 999999999999999998888899999999877655543322 245799999999999887
Q ss_pred hcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcce
Q 011605 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (481)
Q Consensus 188 ~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (481)
..+. ..++++++|||||+|.+.+.++...+..++...... ...
T Consensus 229 ~~~~-~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~------------------------------------~~~ 271 (475)
T PRK01297 229 QRGE-VHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK------------------------------------EER 271 (475)
T ss_pred HcCC-cccccCceEEechHHHHHhcccHHHHHHHHHhCCCC------------------------------------CCc
Confidence 7643 568899999999999999888877777777655321 123
Q ss_pred eeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHH
Q 011605 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (481)
Q Consensus 268 ~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (481)
+.+++|||...........++.++..+......... ..............+...+..++......++||||+++..++.
T Consensus 272 q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~ 350 (475)
T PRK01297 272 QTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVAS-DTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRR 350 (475)
T ss_pred eEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCC-CcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHH
Confidence 789999999887777777776666655433322211 2222233334455677777788877767899999999999999
Q ss_pred HHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcc
Q 011605 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (481)
Q Consensus 348 l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~ 427 (481)
+++.|...+ ..+..+||+++..+|.++++.|++|+.++||||+++++|+|+|++++||+++.|.+..+|+||+||+|
T Consensus 351 l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaG 427 (475)
T PRK01297 351 IEERLVKDG---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTG 427 (475)
T ss_pred HHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccC
Confidence 999998776 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhh
Q 011605 428 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 470 (481)
Q Consensus 428 R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (481)
|.|++|.+++|+..+|...+.++++.+... ......|+++..
T Consensus 428 R~g~~g~~i~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~ 469 (475)
T PRK01297 428 RAGASGVSISFAGEDDAFQLPEIEELLGRK-ISCEMPPAELLK 469 (475)
T ss_pred CCCCCceEEEEecHHHHHHHHHHHHHhCCC-CcccCCcHHHhh
Confidence 999999999999999888888887777543 222334444443
No 11
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=7.4e-52 Score=407.15 Aligned_cols=359 Identities=30% Similarity=0.462 Sum_probs=298.0
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc---c
Q 011605 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---V 99 (481)
Q Consensus 23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~---~ 99 (481)
+|+++. |++.+.+.++++||..|+++|.++++.++. ++++++++|||+|||++|+++++..+.... .
T Consensus 2 ~f~~l~------l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~ 71 (434)
T PRK11192 2 TFSELE------LDESLLEALQDKGYTRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKS 71 (434)
T ss_pred CHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCC
Confidence 466664 999999999999999999999999999886 889999999999999999999998886532 2
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
...++||++||++|+.|+.+.+..++...++.+..++|+......... +..+++|+|+|
T Consensus 72 ~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---------------------l~~~~~IlV~T 130 (434)
T PRK11192 72 GPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEV---------------------FSENQDIVVAT 130 (434)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHH---------------------hcCCCCEEEEC
Confidence 346899999999999999999999998889999999998876554332 23567999999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccccccc
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
|+++++++.. ..+.+.++++||+||||++++.+|...+..+......
T Consensus 131 p~rl~~~~~~-~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~-------------------------------- 177 (434)
T PRK11192 131 PGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRW-------------------------------- 177 (434)
T ss_pred hHHHHHHHHc-CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCcc--------------------------------
Confidence 9999998876 3466888999999999999998888888877655431
Q ss_pred CCCCCcceeeeeeceeeccC-chhhhcccccCCceeecCCccccCccccccccccc-CCCchHHHHHHHHHhcCCCeEEE
Q 011605 260 KDKPYPRLVKMVLSATLTQD-PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIV 337 (481)
Q Consensus 260 ~~~~~~~~~~v~~sat~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~lV 337 (481)
..+.+++|||+... ...+....+.++..+........ ...+..+.... ....+...+..++......++||
T Consensus 178 ------~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lV 250 (434)
T PRK11192 178 ------RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRE-RKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIV 250 (434)
T ss_pred ------ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCccc-ccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 23789999999743 44455555555554443322221 12222232222 33557777777777666789999
Q ss_pred EecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChh
Q 011605 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (481)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~ 417 (481)
||+++.+++.+++.|...+ ..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..
T Consensus 251 F~~s~~~~~~l~~~L~~~~---~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~ 327 (434)
T PRK11192 251 FVRTRERVHELAGWLRKAG---INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSAD 327 (434)
T ss_pred EeCChHHHHHHHHHHHhCC---CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHH
Confidence 9999999999999999766 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhc
Q 011605 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 418 ~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
.|+||+||+||.|..|.++++++..|...+.++.+.+.
T Consensus 328 ~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 328 TYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred HHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999887664
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-51 Score=404.56 Aligned_cols=363 Identities=31% Similarity=0.528 Sum_probs=319.7
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHh-ccC
Q 011605 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVR 100 (481)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~-~~~ 100 (481)
..|.++. |++++.+++.++||..|+++|..+++.++. |+|+++.++||+|||.+|++|+++.+... ...
T Consensus 29 ~~F~~l~------l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~ 98 (513)
T COG0513 29 PEFASLG------LSPELLQALKDLGFEEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERK 98 (513)
T ss_pred CCHhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccC
Confidence 4566664 999999999999999999999999999887 89999999999999999999999997742 112
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 101 CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
...+||++||++|+.|+.+.+..++... ++.+..++|+.+...+...+ ..+++|+|+|
T Consensus 99 ~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l---------------------~~~~~ivVaT 157 (513)
T COG0513 99 YVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL---------------------KRGVDIVVAT 157 (513)
T ss_pred CCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH---------------------hcCCCEEEEC
Confidence 1129999999999999999999999988 79999999999888776443 2457999999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccccccc
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
|+++++++... .+.++.+.++|+|||+.|++.+|.+.+..++..+..
T Consensus 158 PGRllD~i~~~-~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~-------------------------------- 204 (513)
T COG0513 158 PGRLLDLIKRG-KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPP-------------------------------- 204 (513)
T ss_pred ccHHHHHHHcC-CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCc--------------------------------
Confidence 99999999885 578999999999999999999999999999998854
Q ss_pred CCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccc-cCcccccccccccCCCc-hHHHHHHHHHhcCCCeEEE
Q 011605 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY-KLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIV 337 (481)
Q Consensus 260 ~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lV 337 (481)
..|++++|||.+.....+...++.+|..+....... .....+..+........ |...|..++......++||
T Consensus 205 ------~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IV 278 (513)
T COG0513 205 ------DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIV 278 (513)
T ss_pred ------ccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 238999999999988889999999887665552222 24455666666666554 9999999999887889999
Q ss_pred EecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChh
Q 011605 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (481)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~ 417 (481)
||++...++.++..|...| +.+..+||+++..+|...++.|++|+.+|||||+++++|+|+|++++||+|+.|.++.
T Consensus 279 F~~tk~~~~~l~~~l~~~g---~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e 355 (513)
T COG0513 279 FVRTKRLVEELAESLRKRG---FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPE 355 (513)
T ss_pred EeCcHHHHHHHHHHHHHCC---CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHH
Confidence 9999999999999999887 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCccEEEEeecc-hHHHHHHHHHHhcCC
Q 011605 418 TYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLLQKADND 457 (481)
Q Consensus 418 ~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 457 (481)
.|+||+||+||.|+.|.++.|+.+. +...+..+++.+...
T Consensus 356 ~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 356 DYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred HheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999976 888999998887554
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5.1e-51 Score=409.98 Aligned_cols=367 Identities=26% Similarity=0.440 Sum_probs=306.0
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCc
Q 011605 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102 (481)
Q Consensus 23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~ 102 (481)
+|.++. |++.+.+++.++||.+|+++|.++++.++. ++++++.||||+|||.+|.+|++..+... ...+
T Consensus 7 ~f~~l~------L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~-~~~~ 75 (629)
T PRK11634 7 TFADLG------LKAPILEALNDLGYEKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPE-LKAP 75 (629)
T ss_pred CHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhc-cCCC
Confidence 456653 999999999999999999999999999876 89999999999999999999999887654 3456
Q ss_pred cEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCch
Q 011605 103 RALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (481)
Q Consensus 103 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~ 181 (481)
++||++||++|+.|+++.+..+.... ++.+..++|+......... +..+++|+|+||+
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~---------------------l~~~~~IVVgTPg 134 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA---------------------LRQGPQIVVGTPG 134 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHH---------------------hcCCCCEEEECHH
Confidence 89999999999999999999887655 7888888888776554332 3356799999999
Q ss_pred HHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCC
Q 011605 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (481)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (481)
.+++++.. ..+.++++++||+||||.+++.+|...+..++..+..
T Consensus 135 rl~d~l~r-~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~---------------------------------- 179 (629)
T PRK11634 135 RLLDHLKR-GTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE---------------------------------- 179 (629)
T ss_pred HHHHHHHc-CCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCC----------------------------------
Confidence 99998876 3467889999999999999999999888888776532
Q ss_pred CCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecc
Q 011605 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341 (481)
Q Consensus 262 ~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s 341 (481)
..+.+++|||++.........++.++..+......... ..+...........|...+..++......++||||++
T Consensus 180 ----~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~-~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~t 254 (629)
T PRK11634 180 ----GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTR-PDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRT 254 (629)
T ss_pred ----CCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccC-CceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEecc
Confidence 33789999999988888777777777655443322222 2223333344455677778888877777899999999
Q ss_pred hhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHH
Q 011605 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421 (481)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q 421 (481)
...+..+++.|...+ +.+..+||.|+..+|+.+++.|++|+.+|||||+++++|+|+|++++||+|+.|.+..+|+|
T Consensus 255 k~~a~~l~~~L~~~g---~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvq 331 (629)
T PRK11634 255 KNATLEVAEALERNG---YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVH 331 (629)
T ss_pred HHHHHHHHHHHHhCC---CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHH
Confidence 999999999999876 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCC
Q 011605 422 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 465 (481)
Q Consensus 422 ~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (481)
|+||+||.|+.|.+++++...+...+..+++.+ +..++...+|
T Consensus 332 RiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~-~~~i~~~~~p 374 (629)
T PRK11634 332 RIGRTGRAGRAGRALLFVENRERRLLRNIERTM-KLTIPEVELP 374 (629)
T ss_pred HhccccCCCCcceEEEEechHHHHHHHHHHHHh-CCCcceecCC
Confidence 999999999999999999998888888887765 3333443333
No 14
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-51 Score=374.82 Aligned_cols=439 Identities=44% Similarity=0.674 Sum_probs=365.3
Q ss_pred cccCCCCCCcccCCCCCCCC---------CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCC-----CCCCCEEEECCCC
Q 011605 14 WMRSPVDVSLFEDCPLDHLP---------CLDPRLKVALQNMGISSLFPVQVAVWQETIGPG-----LFERDLCINSPTG 79 (481)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~---------~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~-----~~~~~~l~~~~tG 79 (481)
|.+.|...+.-+--.+..+. .|...+...+..|+++++.|.|...++.++... ...++++|.||||
T Consensus 114 wva~p~t~~~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTG 193 (620)
T KOG0350|consen 114 WVAIPETAQNNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTG 193 (620)
T ss_pred cccCceecCCCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCC
Confidence 88887766654433333332 122334455888999999999999998886433 2467899999999
Q ss_pred chhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCcc
Q 011605 80 SGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159 (481)
Q Consensus 80 ~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 159 (481)
||||++|.+|+++.+...+.+..+++|++||+.|+.|.++.+.+++...|+.++.+.|..+..++..++...++.
T Consensus 194 SGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~----- 268 (620)
T KOG0350|consen 194 SGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPE----- 268 (620)
T ss_pred CCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCc-----
Confidence 999999999999999998888899999999999999999999999999999999999999999999888766543
Q ss_pred CChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccc-----cccccc
Q 011605 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD-----NENRFS 234 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~-----~~~~~~ 234 (481)
...+|+|+||++|++.+...+.+.++++.++|||||++|++.+|.+|+..+..++... ..+.+.
T Consensus 269 -----------~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~ 337 (620)
T KOG0350|consen 269 -----------CRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIR 337 (620)
T ss_pred -----------cccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhh
Confidence 2349999999999999998888999999999999999999999999999999888654 222222
Q ss_pred cccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecC---CccccCcccccccc
Q 011605 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYK 311 (481)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 311 (481)
......+..+..... .+ ..+++....+++|||+......+..+.+..|-..... ...+.++..+.++.
T Consensus 338 ~~~~~~pt~~~e~~t--------~~-~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~ 408 (620)
T KOG0350|consen 338 QRQAPQPTVLSELLT--------KL-GKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRL 408 (620)
T ss_pred hcccCCchhhHHHHh--------hc-CCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhce
Confidence 222222222221111 11 3334566688999999999999999888888544333 46677888888999
Q ss_pred cccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHh-hccccceeEEEcccccChHHHHHHHHHHhcCCceEEE
Q 011605 312 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390 (481)
Q Consensus 312 ~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv 390 (481)
..+....+...+..++......++|+|+++...+..++..|+ .++..+..+-.+.|.++.+.|...++.|..|++++||
T Consensus 409 vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLI 488 (620)
T KOG0350|consen 409 VVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLI 488 (620)
T ss_pred eecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEE
Confidence 999999999999999999889999999999999999999998 6666677888899999999999999999999999999
Q ss_pred EccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcC-CCCCCCCCCchhh
Q 011605 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIPSSLI 469 (481)
Q Consensus 391 ~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 469 (481)
|++++++|+|+.++++||+|++|.+...|+||+||.+|.|++|.|+.+.++.+...+.++++.... ..++++.++...+
T Consensus 489 cSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~~d~~~i~~~e~~~~ 568 (620)
T KOG0350|consen 489 CSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNLWDGVEIQPIEYIFI 568 (620)
T ss_pred ehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcccCCcceeecCchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999877 7778888887777
Q ss_pred hhhhcccc
Q 011605 470 ESLRPVYK 477 (481)
Q Consensus 470 ~~~~~~~~ 477 (481)
+.-.+.|+
T Consensus 569 ~~~~~~Yt 576 (620)
T KOG0350|consen 569 KDEDDRYT 576 (620)
T ss_pred HHHHHHHH
Confidence 66555554
No 15
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-51 Score=373.91 Aligned_cols=383 Identities=34% Similarity=0.569 Sum_probs=332.7
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc--c
Q 011605 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--V 99 (481)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~--~ 99 (481)
.+|.+++ |+.-+++++..+||..|+|+|...++-.+- |++++.+|.||||||.+|++|++..+...+ .
T Consensus 181 ~sF~~mN------LSRPlLka~~~lGy~~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~ 250 (691)
T KOG0338|consen 181 ESFQSMN------LSRPLLKACSTLGYKKPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKV 250 (691)
T ss_pred hhHHhcc------cchHHHHHHHhcCCCCCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccC
Confidence 3566665 999999999999999999999888876654 999999999999999999999999987654 3
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
..-++||++||++|+.|.....++++.+.++.++++.|+.+...+... +++.|+|+|+|
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~---------------------LRs~PDIVIAT 309 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAV---------------------LRSRPDIVIAT 309 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHH---------------------HhhCCCEEEec
Confidence 445899999999999999999999999999999999999987766543 45778999999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccccccc
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
|++|.+++.+...+.++++.++|+|||++|++.+|.+.+..|+..+...+
T Consensus 310 PGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~R------------------------------ 359 (691)
T KOG0338|consen 310 PGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNR------------------------------ 359 (691)
T ss_pred chhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccc------------------------------
Confidence 99999999999999999999999999999999999999999999997655
Q ss_pred CCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccC--CCchHHHHHHHHHhcCCCeEEE
Q 011605 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE--SKLKPLYLVALLQSLGEEKCIV 337 (481)
Q Consensus 260 ~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~~~l~~~l~~~~~~~~lV 337 (481)
|.+++|||.+.....++...+..|+.+.........+...+.|..+.+ ...+...+..++...-..+++|
T Consensus 360 --------QTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~iv 431 (691)
T KOG0338|consen 360 --------QTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIV 431 (691)
T ss_pred --------cceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEE
Confidence 789999999999999999999999877665554444444444443332 2335566677777666789999
Q ss_pred EecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChh
Q 011605 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (481)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~ 417 (481)
|+.+.+.|..+.-.|--+| ..++-+||.++..+|.+.++.|+++++++||||+..++|+||+++..||+|..|.+..
T Consensus 432 Fv~tKk~AHRl~IllGLlg---l~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e 508 (691)
T KOG0338|consen 432 FVRTKKQAHRLRILLGLLG---LKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIE 508 (691)
T ss_pred EEehHHHHHHHHHHHHHhh---chhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHH
Confidence 9999999999988776555 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHh--cCCCCCCCCCCchhhhhhhccc
Q 011605 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA--DNDSCPIHSIPSSLIESLRPVY 476 (481)
Q Consensus 418 ~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 476 (481)
.|+||+||..|.|+.|.++.++-.++-+.++.+++.. -...+-...+|.+.++.|++..
T Consensus 509 ~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~Iek~~~~i 569 (691)
T KOG0338|consen 509 HYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVIEKFRKKI 569 (691)
T ss_pred HHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999885 3444455678888888877654
No 16
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.7e-50 Score=393.65 Aligned_cols=354 Identities=24% Similarity=0.421 Sum_probs=288.0
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
++++.+.+++..+||..|+++|.++++.++. ++++++.+|||+|||++|+++++..+... ..+.++||++|+++|
T Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~-~~~~~~lil~Pt~~L 108 (401)
T PTZ00424 34 KLNEDLLRGIYSYGFEKPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYD-LNACQALILAPTREL 108 (401)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCC-CCCceEEEECCCHHH
Confidence 3999999999999999999999999999886 88999999999999999999998877543 345689999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCc
Q 011605 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
+.|+.+.+..++...++.+..+.|+........ .+..+++|+|+||+.+.+.+.+. ..
T Consensus 109 ~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~Tp~~l~~~l~~~-~~ 166 (401)
T PTZ00424 109 AQQIQKVVLALGDYLKVRCHACVGGTVVRDDIN---------------------KLKAGVHMVVGTPGRVYDMIDKR-HL 166 (401)
T ss_pred HHHHHHHHHHHhhhcCceEEEEECCcCHHHHHH---------------------HHcCCCCEEEECcHHHHHHHHhC-Cc
Confidence 999999999998777788888888776544432 23355799999999999888763 35
Q ss_pred ccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeec
Q 011605 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 273 (481)
.+++++++|+||+|++.+.++...+..++.... +..+.+++|
T Consensus 167 ~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~~S 208 (401)
T PTZ00424 167 RVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP--------------------------------------PDVQVALFS 208 (401)
T ss_pred ccccccEEEEecHHHHHhcchHHHHHHHHhhCC--------------------------------------CCcEEEEEE
Confidence 688999999999999988888776666654432 345899999
Q ss_pred eeeccCchhhhcccccCCceeecCCccccCccccccccc-ccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHH
Q 011605 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL-ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (481)
||++.........++..+............ .....+.. ......+...+..++......++||||+++.+++.+++.|
T Consensus 209 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l 287 (401)
T PTZ00424 209 ATMPNEILELTTKFMRDPKRILVKKDELTL-EGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKM 287 (401)
T ss_pred ecCCHHHHHHHHHHcCCCEEEEeCCCCccc-CCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHH
Confidence 999876655555555555443222222111 12222222 2222335555666666666789999999999999999999
Q ss_pred hhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCC
Q 011605 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~ 432 (481)
.+.+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.
T Consensus 288 ~~~~---~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 364 (401)
T PTZ00424 288 HERD---FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK 364 (401)
T ss_pred HHCC---CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC
Confidence 8765 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeecchHHHHHHHHHHhcC
Q 011605 433 GRCFTLLHKDEVKRFKKLLQKADN 456 (481)
Q Consensus 433 g~~~~~~~~~~~~~~~~~~~~~~~ 456 (481)
|.|++++.+++.+.+..+.+.+..
T Consensus 365 G~~i~l~~~~~~~~~~~~e~~~~~ 388 (401)
T PTZ00424 365 GVAINFVTPDDIEQLKEIERHYNT 388 (401)
T ss_pred ceEEEEEcHHHHHHHHHHHHHHCC
Confidence 999999999999999998887754
No 17
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.8e-50 Score=370.26 Aligned_cols=389 Identities=26% Similarity=0.411 Sum_probs=330.2
Q ss_pred ccCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHH
Q 011605 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l 94 (481)
...|.++-+|++.+ +|.++++++...||..|+|+|..+++-.+ +.+|+|..+.||||||.+|++|++.++
T Consensus 238 ~~lpnplrnwEE~~------~P~e~l~~I~~~~y~eptpIqR~aipl~l----Q~rD~igvaETgsGktaaf~ipLl~~I 307 (673)
T KOG0333|consen 238 GRLPNPLRNWEESG------FPLELLSVIKKPGYKEPTPIQRQAIPLGL----QNRDPIGVAETGSGKTAAFLIPLLIWI 307 (673)
T ss_pred CCCCccccChhhcC------CCHHHHHHHHhcCCCCCchHHHhhccchh----ccCCeeeEEeccCCccccchhhHHHHH
Confidence 46788888999996 99999999999999999999988877544 489999999999999999999999888
Q ss_pred HHhc--------cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHH
Q 011605 95 SNRA--------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166 (481)
Q Consensus 95 ~~~~--------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (481)
..-+ ..+++++|++||++|++|+..+-.+++..+++.+..+.|+.+.+++..+
T Consensus 308 sslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fq------------------- 368 (673)
T KOG0333|consen 308 SSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQ------------------- 368 (673)
T ss_pred HcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhh-------------------
Confidence 6532 4678999999999999999999999999999999999999988776443
Q ss_pred HhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccc---ccccccccc
Q 011605 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS---DASTFLPSA 243 (481)
Q Consensus 167 ~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~ 243 (481)
+..+|+|+|+||+.|.+.+++.. +.++...++|+|||+.|++.+|.+.+..++...+..+...-. .....+...
T Consensus 369 --ls~gceiviatPgrLid~Lenr~-lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~ 445 (673)
T KOG0333|consen 369 --LSMGCEIVIATPGRLIDSLENRY-LVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKN 445 (673)
T ss_pred --hhccceeeecCchHHHHHHHHHH-HHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhh
Confidence 34789999999999999998743 668899999999999999999999999999988765433211 111111111
Q ss_pred ccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHH
Q 011605 244 FGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323 (481)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 323 (481)
+.... .-.+.+.+|||.++....++..++.+|..+......-..+.. .........+.|...|
T Consensus 446 ~~~~k----------------~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rv-eQ~v~m~~ed~k~kkL 508 (673)
T KOG0333|consen 446 FSSSK----------------KYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRV-EQKVEMVSEDEKRKKL 508 (673)
T ss_pred ccccc----------------ceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccch-heEEEEecchHHHHHH
Confidence 11111 113788999999999999999999999988777766555443 3344445556678899
Q ss_pred HHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCC
Q 011605 324 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403 (481)
Q Consensus 324 ~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~ 403 (481)
.+++.+....++|||+|+.+.|+.+|+.|.+.+ +++..+||+-+.++|+..++.|++|..+|||||+++++|+|+|+
T Consensus 509 ~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g---~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpn 585 (673)
T KOG0333|consen 509 IEILESNFDPPIIIFVNTKKGADALAKILEKAG---YKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPN 585 (673)
T ss_pred HHHHHhCCCCCEEEEEechhhHHHHHHHHhhcc---ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCc
Confidence 999998888899999999999999999999988 99999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhc
Q 011605 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 404 ~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
+++||+|+.+.|...|.||+||.||.|+.|.++.|+.+.|...+..+...+.
T Consensus 586 VSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 586 VSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred cceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876555555443
No 18
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-50 Score=361.86 Aligned_cols=357 Identities=32% Similarity=0.519 Sum_probs=313.9
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccC----CccEEEEccc
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR----CLRALVVLPT 110 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~----~~~~lil~Pt 110 (481)
|++++..++.++||..++|.|..+++.++. ++|+.+.++||||||++|++|+++.+...... ...++||+||
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPT 88 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPT 88 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCc
Confidence 789999999999999999999999988876 99999999999999999999999999554321 2368999999
Q ss_pred HHHHHHHHHHHHHhccc-cCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhc
Q 011605 111 RDLALQVKDVFAAIAPA-VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (481)
Q Consensus 111 ~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~ 189 (481)
++|+.|+.+.+..+... .++++..+.|+....++...+. ..+++|+|+||++|.+.+.+
T Consensus 89 RELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fk--------------------ee~~nIlVgTPGRL~di~~~ 148 (567)
T KOG0345|consen 89 RELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFK--------------------EEGPNILVGTPGRLLDILQR 148 (567)
T ss_pred HHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHH--------------------HhCCcEEEeCchhHHHHHhc
Confidence 99999999999988776 4889999999988887766554 46789999999999999987
Q ss_pred C-CCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCccee
Q 011605 190 T-RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (481)
Q Consensus 190 ~-~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (481)
. ..+++.+++++|+|||+.+++.+|...+..|+..+++.+ +
T Consensus 149 ~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQR--------------------------------------R 190 (567)
T KOG0345|consen 149 EAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQR--------------------------------------R 190 (567)
T ss_pred hhhhccccccceEEecchHhHhcccHHHHHHHHHHhccccc--------------------------------------c
Confidence 3 345677999999999999999999999999999987654 4
Q ss_pred eeeeceeeccCchhhhcccccCCceeecCCcc-ccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHH
Q 011605 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (481)
Q Consensus 269 ~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (481)
+=++|||.......+...++.+|..+...... ...|.....++..+....|...+.+++.+...+++|||+++-...+.
T Consensus 191 TGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeY 270 (567)
T KOG0345|consen 191 TGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEY 270 (567)
T ss_pred cccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHH
Confidence 56899999999999999999999877655443 23577788889999999999999999999999999999999999999
Q ss_pred HHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcc
Q 011605 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (481)
Q Consensus 348 l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~ 427 (481)
....+... .....+..+||.|....|..+++.|++..-.+|+||+++++|+|+|+++.||++++|.++..|.||+||++
T Consensus 271 f~~~~~~~-l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTa 349 (567)
T KOG0345|consen 271 FGKLFSRL-LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTA 349 (567)
T ss_pred HHHHHHHH-hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhh
Confidence 99888776 23367889999999999999999999988889999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeecchHHHHHHHHHHhc
Q 011605 428 RAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 428 R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
|.|+.|.+++|+.+ ..+.+.++++--+
T Consensus 350 R~gr~G~Aivfl~p-~E~aYveFl~i~~ 376 (567)
T KOG0345|consen 350 RAGREGNAIVFLNP-REEAYVEFLRIKG 376 (567)
T ss_pred hccCccceEEEecc-cHHHHHHHHHhcC
Confidence 99999999999988 6666666665543
No 19
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-50 Score=348.02 Aligned_cols=362 Identities=27% Similarity=0.470 Sum_probs=327.1
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
+|.++++..+.+.||..|+|+|.++++.++. |++++..+..|+|||-+|..|+++.+... .....++|++||++|
T Consensus 91 ~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLt----GrdiLaRaKNGTGKT~a~~IP~Lekid~~-~~~IQ~~ilVPtrel 165 (459)
T KOG0326|consen 91 CLKRELLMGIFEKGFEKPSPIQEESIPIALT----GRDILARAKNGTGKTAAYCIPVLEKIDPK-KNVIQAIILVPTREL 165 (459)
T ss_pred hhhHHHHHHHHHhccCCCCCccccccceeec----chhhhhhccCCCCCccceechhhhhcCcc-ccceeEEEEeecchh
Confidence 5999999999999999999999998887776 99999999999999999999999988775 356689999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCc
Q 011605 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
+-|....+.++.+..++.+...+|+++..++...+ ....+++|+||++++++..+ +..
T Consensus 166 ALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl---------------------~~~VH~~vgTPGRIlDL~~K-gVa 223 (459)
T KOG0326|consen 166 ALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRL---------------------NQTVHLVVGTPGRILDLAKK-GVA 223 (459)
T ss_pred hHHHHHHHHHHhcccCeEEEEecCCcccccceeee---------------------cCceEEEEcCChhHHHHHhc-ccc
Confidence 99999999999999999999999999987775433 24568999999999999987 445
Q ss_pred ccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeec
Q 011605 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 273 (481)
.+++..++|+|||+.+++..|...++.++..++..+ |++++|
T Consensus 224 ~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~r--------------------------------------QillyS 265 (459)
T KOG0326|consen 224 DLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKER--------------------------------------QILLYS 265 (459)
T ss_pred cchhceEEEechhhhhhchhhhhHHHHHHHhCCccc--------------------------------------eeeEEe
Confidence 789999999999999999999999999999886543 789999
Q ss_pred eeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHh
Q 011605 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~ 353 (481)
||.+-....+....+..|+.+....+- ....+..|+.......|...|..++.+..-++.+|||+|...++.+|+.+.
T Consensus 266 ATFP~tVk~Fm~~~l~kPy~INLM~eL--tl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKIT 343 (459)
T KOG0326|consen 266 ATFPLTVKGFMDRHLKKPYEINLMEEL--TLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKIT 343 (459)
T ss_pred cccchhHHHHHHHhccCcceeehhhhh--hhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHH
Confidence 999999999999999999988765543 235567788888888999999999999989999999999999999999999
Q ss_pred hccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCc
Q 011605 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g 433 (481)
++| +.++++|+.|-.+.|..++..|++|.++.||||+.+.+|+|++++++||+|+.|+++..|++|+||.||.|..|
T Consensus 344 elG---yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 344 ELG---YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred hcc---chhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc
Confidence 888 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchh
Q 011605 434 RCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 468 (481)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (481)
.++.++.-.|-..+..+++.+..+= .++|..+
T Consensus 421 lAInLityedrf~L~~IE~eLGtEI---~pip~~i 452 (459)
T KOG0326|consen 421 LAINLITYEDRFNLYRIEQELGTEI---KPIPSNI 452 (459)
T ss_pred eEEEEEehhhhhhHHHHHHHhcccc---ccCCCcC
Confidence 9999999999999999999997654 5566543
No 20
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-48 Score=342.00 Aligned_cols=365 Identities=29% Similarity=0.444 Sum_probs=319.4
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
||++++.+-++++|+..|+|.|..+++.+++ |+|++-+|.||||||.++.+|++..+..++ .+.-++|++||++|
T Consensus 13 Gl~~Wlve~l~~l~i~~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP-~giFalvlTPTrEL 87 (442)
T KOG0340|consen 13 GLSPWLVEQLKALGIKKPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDP-YGIFALVLTPTREL 87 (442)
T ss_pred CccHHHHHHHHHhcCCCCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCC-CcceEEEecchHHH
Confidence 6999999999999999999999999999987 999999999999999999999999999875 45579999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCC-
Q 011605 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG- 192 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~- 192 (481)
+-|..+++..+++..++++.+++|+.+.-.....+ ...++++|+||+++..++.....
T Consensus 88 A~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L---------------------~~rPHvVvatPGRlad~l~sn~~~ 146 (442)
T KOG0340|consen 88 ALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAIL---------------------SDRPHVVVATPGRLADHLSSNLGV 146 (442)
T ss_pred HHHHHHHHHHhcccccceEEEEEccHHHhhhhhhc---------------------ccCCCeEecCccccccccccCCcc
Confidence 99999999999999999999999999876665443 35679999999999999887633
Q ss_pred --cccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeee
Q 011605 193 --FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (481)
Q Consensus 193 --~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 270 (481)
..+.++.++|+|||+.+++..|.+.++.++..++..+ +..
T Consensus 147 ~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~R--------------------------------------QtL 188 (442)
T KOG0340|consen 147 CSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPR--------------------------------------QTL 188 (442)
T ss_pred chhhhhceeeEEecchhhhhccchhhHHhhhhccCCCcc--------------------------------------ceE
Confidence 3578899999999999999999999998888775432 789
Q ss_pred eeceeeccCchhhhcccccCC-ceeecCCccccCcccccccccccCCCchHHHHHHHHHhcC---CCeEEEEecchhhHH
Q 011605 271 VLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG---EEKCIVFTSSVESTH 346 (481)
Q Consensus 271 ~~sat~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~~lVf~~s~~~~~ 346 (481)
++|||..+....+.......+ ...-.........+....-+...+...+..++..+++... ++.++||+++..+|+
T Consensus 189 lfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ 268 (442)
T KOG0340|consen 189 LFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQ 268 (442)
T ss_pred EEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHH
Confidence 999999988877776655542 2223334455666777777788888889999999887663 568999999999999
Q ss_pred HHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhc
Q 011605 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (481)
Q Consensus 347 ~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~ 426 (481)
.++..|+.++ +.+..+|+.|+..+|...+.+|+++..+|||||+..++|+|+|.++.||+++.|..+..|+||+||.
T Consensus 269 ~l~~~l~~le---~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRt 345 (442)
T KOG0340|consen 269 LLSMTLKNLE---VRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRT 345 (442)
T ss_pred HHHHHHhhhc---eeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcch
Confidence 9999999877 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCc
Q 011605 427 ARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPS 466 (481)
Q Consensus 427 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (481)
.|.|+.|.++.++...|++.+..+++.+++ .+.+++...
T Consensus 346 ARAGR~G~aiSivt~rDv~l~~aiE~~igk-Kl~e~~~~~ 384 (442)
T KOG0340|consen 346 ARAGRKGMAISIVTQRDVELLQAIEEEIGK-KLTEYNKVQ 384 (442)
T ss_pred hcccCCcceEEEechhhHHHHHHHHHHHhc-ccccccccc
Confidence 999999999999999999999999999965 444444433
No 21
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.6e-48 Score=355.69 Aligned_cols=368 Identities=30% Similarity=0.456 Sum_probs=310.9
Q ss_pred CCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc---cCCccEE
Q 011605 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRAL 105 (481)
Q Consensus 29 ~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~---~~~~~~l 105 (481)
+++.+ |++..++++++|||.++++.|...++.++ .|+++++.|-||+|||+++++|+++.+.+.+ ..+..++
T Consensus 84 f~~~~-LS~~t~kAi~~~GF~~MT~VQ~~ti~pll----~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vl 158 (543)
T KOG0342|consen 84 FEEGS-LSPLTLKAIKEMGFETMTPVQQKTIPPLL----EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVL 158 (543)
T ss_pred hhccc-cCHHHHHHHHhcCccchhHHHHhhcCccC----CCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEE
Confidence 44444 99999999999999999999977766555 4999999999999999999999999998753 3566899
Q ss_pred EEcccHHHHHHHHHHHHHhcccc-CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHH
Q 011605 106 VVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184 (481)
Q Consensus 106 il~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~ 184 (481)
|++||++|+.|.+.+.+++.... ++.+..+.|+......... +..+++|+|+||++|.
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~k---------------------l~k~~niliATPGRLl 217 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADK---------------------LVKGCNILIATPGRLL 217 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHH---------------------hhccccEEEeCCchHH
Confidence 99999999999999999999888 8888899998876655433 3357899999999999
Q ss_pred HHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCC
Q 011605 185 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264 (481)
Q Consensus 185 ~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (481)
+++++...+.+...+++|+|||+++++.+|.+.++.+...+...+
T Consensus 218 DHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~r----------------------------------- 262 (543)
T KOG0342|consen 218 DHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQR----------------------------------- 262 (543)
T ss_pred hHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccc-----------------------------------
Confidence 999998877778889999999999999999999999999987433
Q ss_pred cceeeeeeceeeccCchhhhcccccC-CceeecCCcc-ccCcccccccccccCCCchHHHHHHHHHhcCC-CeEEEEecc
Q 011605 265 PRLVKMVLSATLTQDPNKLAQLDLHH-PLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSS 341 (481)
Q Consensus 265 ~~~~~v~~sat~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~-~~~lVf~~s 341 (481)
|.+++|||.+.....++...+.. +..+...... ....+..+.-..+++...++..+..++.++.. .+++|||+|
T Consensus 263 ---qt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT 339 (543)
T KOG0342|consen 263 ---QTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFST 339 (543)
T ss_pred ---eeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEech
Confidence 78999999999998888877665 5555443332 23344455556677777778888898888765 899999999
Q ss_pred hhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHH
Q 011605 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421 (481)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q 421 (481)
.......++.|.... .++..+||+.+...|..+...|++.+.-|||||++.++|+|+|+++.||++++|.++.+|+|
T Consensus 340 ~~~vk~~~~lL~~~d---lpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIH 416 (543)
T KOG0342|consen 340 CMSVKFHAELLNYID---LPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIH 416 (543)
T ss_pred hhHHHHHHHHHhhcC---CchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHH
Confidence 999999999998655 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCch
Q 011605 422 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSS 467 (481)
Q Consensus 422 ~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (481)
|+||.+|.|..|.+++++.+.+..-+. .+++.-+...++|..
T Consensus 417 RvGRTaR~gk~G~alL~l~p~El~Flr----~LK~lpl~~~e~~~~ 458 (543)
T KOG0342|consen 417 RVGRTAREGKEGKALLLLAPWELGFLR----YLKKLPLEEFEFPPL 458 (543)
T ss_pred HhccccccCCCceEEEEeChhHHHHHH----HHhhCCCcccCCCCC
Confidence 999999999999999999876665444 444444444444443
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-49 Score=350.02 Aligned_cols=380 Identities=28% Similarity=0.450 Sum_probs=327.2
Q ss_pred cCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 011605 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~ 95 (481)
+.|+++-+|+++. +-.+++...+...||..|+|+|.+||+-++. |.+++.++.||+|||++++++.+..+.
T Consensus 213 pIPnP~ctFddAF-----q~~pevmenIkK~GFqKPtPIqSQaWPI~LQ----G~DliGVAQTgtgKtL~~L~pg~ihi~ 283 (629)
T KOG0336|consen 213 PIPNPVCTFDDAF-----QCYPEVMENIKKTGFQKPTPIQSQAWPILLQ----GIDLIGVAQTGTGKTLAFLLPGFIHID 283 (629)
T ss_pred cCCCCcCcHHHHH-----hhhHHHHHHHHhccCCCCCcchhcccceeec----CcceEEEEecCCCcCHHHhccceeeee
Confidence 5778888888885 5678999999999999999999999988775 999999999999999999998665553
Q ss_pred H-----hccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhc
Q 011605 96 N-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (481)
Q Consensus 96 ~-----~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (481)
. +...++.+|+++||++|+.|..-+...+.-. |+...+++|+......... +.
T Consensus 284 aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyn-g~ksvc~ygggnR~eqie~---------------------lk 341 (629)
T KOG0336|consen 284 AQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYN-GLKSVCVYGGGNRNEQIED---------------------LK 341 (629)
T ss_pred ccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhc-CcceEEEecCCCchhHHHH---------------------Hh
Confidence 3 2346789999999999999998888777433 7777788888776655544 44
Q ss_pred CCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhh
Q 011605 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250 (481)
Q Consensus 171 ~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
.+.+|+|+||.+|.++... ..+.+..+.++|+|||+.|++.+|...+..++--++
T Consensus 342 rgveiiiatPgrlndL~~~-n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR------------------------ 396 (629)
T KOG0336|consen 342 RGVEIIIATPGRLNDLQMD-NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIR------------------------ 396 (629)
T ss_pred cCceEEeeCCchHhhhhhc-CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC------------------------
Confidence 6789999999999998776 447899999999999999999999999988876654
Q ss_pred hccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhc
Q 011605 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330 (481)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 330 (481)
|.-+.++.|||.+.....+...+++.|.++.........-..+.....+.....|.+.+..++..+
T Consensus 397 --------------PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~m 462 (629)
T KOG0336|consen 397 --------------PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANM 462 (629)
T ss_pred --------------CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhc
Confidence 444889999999999999999999999888777666655556666667777778888888877776
Q ss_pred -CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEE
Q 011605 331 -GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409 (481)
Q Consensus 331 -~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~ 409 (481)
...++||||.+...|..+...|.-.| +..-.+||.-+..+|+..++.|++|+.+|||+|+..++|+|++++.||++
T Consensus 463 s~ndKvIiFv~~K~~AD~LSSd~~l~g---i~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N 539 (629)
T KOG0336|consen 463 SSNDKVIIFVSRKVMADHLSSDFCLKG---ISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN 539 (629)
T ss_pred CCCceEEEEEechhhhhhccchhhhcc---cchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec
Confidence 56799999999888887776665434 77888999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhhh
Q 011605 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 471 (481)
Q Consensus 410 ~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (481)
|+.|.+...|.||+||.||.|+.|.++.++..+|....+.+++-++++. +++|+++..+
T Consensus 540 yDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~ae---QevPdeL~~m 598 (629)
T KOG0336|consen 540 YDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAE---QEVPDELVRM 598 (629)
T ss_pred cCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhh---hhCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999988 9999998765
No 23
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-47 Score=352.58 Aligned_cols=347 Identities=29% Similarity=0.439 Sum_probs=316.3
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHh---ccCCccEEEEcccH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTR 111 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~---~~~~~~~lil~Pt~ 111 (481)
|++..++.|++.+|..++.+|..+++..+. |++++-.+-||||||++++.|+++.+... +..|..+|||.||+
T Consensus 76 ls~~t~kgLke~~fv~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTR 151 (758)
T KOG0343|consen 76 LSQKTLKGLKEAKFVKMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTR 151 (758)
T ss_pred CchHHHHhHhhcCCccHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchH
Confidence 999999999999999999999988777665 99999999999999999999999999874 35677899999999
Q ss_pred HHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCC
Q 011605 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 191 (481)
Q Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~ 191 (481)
+|+.|.++.+.++++..+.+++++-|+.....+.... ++.+|+||||++|+..+....
T Consensus 152 ELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi----------------------~~mNILVCTPGRLLQHmde~~ 209 (758)
T KOG0343|consen 152 ELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI----------------------SQMNILVCTPGRLLQHMDENP 209 (758)
T ss_pred HHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh----------------------hcCCeEEechHHHHHHhhhcC
Confidence 9999999999999999999999999998866554332 456999999999999999888
Q ss_pred CcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeee
Q 011605 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (481)
Q Consensus 192 ~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (481)
.+..+++.++|+|||+.+++.+|...+..|+..++..+ |.++
T Consensus 210 ~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~R--------------------------------------QTLL 251 (758)
T KOG0343|consen 210 NFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKR--------------------------------------QTLL 251 (758)
T ss_pred CCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhh--------------------------------------eeee
Confidence 88899999999999999999999999999998886543 7899
Q ss_pred eceeeccCchhhhcccccCCceeecC-CccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHH
Q 011605 272 LSATLTQDPNKLAQLDLHHPLFLTTG-ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350 (481)
Q Consensus 272 ~sat~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~ 350 (481)
+|||.......++++.+.+|..+..- ......|.....+++..+...|+..|..++..+...+.|||++|-+++..+++
T Consensus 252 FSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e 331 (758)
T KOG0343|consen 252 FSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYE 331 (758)
T ss_pred eecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHH
Confidence 99999999999999999999887665 33467788889999999999999999999999999999999999999999999
Q ss_pred HHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCC
Q 011605 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (481)
Q Consensus 351 ~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~ 430 (481)
.+..+. .+..+..+||+|+...|.++...|...+..||+||+++++|+|+|.+++||+++.|.+...|+||+||..|.+
T Consensus 332 ~F~rlr-pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~ 410 (758)
T KOG0343|consen 332 AFCRLR-PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYK 410 (758)
T ss_pred HHHhcC-CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhccc
Confidence 998874 4578889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeecchHHH
Q 011605 431 QLGRCFTLLHKDEVKR 446 (481)
Q Consensus 431 ~~g~~~~~~~~~~~~~ 446 (481)
..|.+++++.+.+.+.
T Consensus 411 ~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 411 ERGESLLMLTPSEEEA 426 (758)
T ss_pred CCCceEEEEcchhHHH
Confidence 9999999999988543
No 24
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-47 Score=355.26 Aligned_cols=382 Identities=29% Similarity=0.438 Sum_probs=316.9
Q ss_pred cCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 011605 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~ 95 (481)
.-|++...|.... ++..+...++..++..|+|+|+.+++.+.. |+++.++|+||+|||.++++|++..+.
T Consensus 68 ~~p~~i~~f~~~~------l~~~l~~ni~~~~~~~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~ 137 (482)
T KOG0335|consen 68 DVPPHIPTFDEAI------LGEALAGNIKRSGYTKPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLL 137 (482)
T ss_pred ccCCCcccccccc------hhHHHhhccccccccCCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHH
Confidence 4445555555443 889999999999999999999998877665 899999999999999999999999998
Q ss_pred Hhcc---------CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHH
Q 011605 96 NRAV---------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166 (481)
Q Consensus 96 ~~~~---------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (481)
.... ..+.++|++||++|+.|.+.+.+++.-..++.++..+|+.+......
T Consensus 138 ~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~-------------------- 197 (482)
T KOG0335|consen 138 DEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLR-------------------- 197 (482)
T ss_pred hcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhh--------------------
Confidence 7532 25899999999999999999999998888999999999977665543
Q ss_pred HhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhH-HHHhhhHHHHHHhccccccccccccccccccccc
Q 011605 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 245 (481)
Q Consensus 167 ~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (481)
.+.++|+|+++||++|.++++. ..+.+..+.++|+|||+.|++ .+|...+..+........
T Consensus 198 -~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~---------------- 259 (482)
T KOG0335|consen 198 -FIKRGCDILVATPGRLKDLIER-GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPP---------------- 259 (482)
T ss_pred -hhccCccEEEecCchhhhhhhc-ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCC----------------
Confidence 4457899999999999999887 447899999999999999999 899999999988765432
Q ss_pred chhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccC-CceeecCCccccCcccccccccccCCCchHHHHH
Q 011605 246 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH-PLFLTTGETRYKLPERLESYKLICESKLKPLYLV 324 (481)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 324 (481)
...-+.+++|||.+......+..++.+ ...+.............+.+ .......|...|.
T Consensus 260 ------------------~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i-~~V~~~~kr~~Ll 320 (482)
T KOG0335|consen 260 ------------------KNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKI-LFVNEMEKRSKLL 320 (482)
T ss_pred ------------------ccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEe-eeecchhhHHHHH
Confidence 134478999999999998877777776 33333333332222222223 3334455666666
Q ss_pred HHHHhcC----CC-----eEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcccc
Q 011605 325 ALLQSLG----EE-----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (481)
Q Consensus 325 ~~l~~~~----~~-----~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l 395 (481)
+++.... .+ +++|||.+.+.+..++..|...+ +.+.-+||.-...+|.+.++.|+.|++.+||||+++
T Consensus 321 dll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~---~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~Va 397 (482)
T KOG0335|consen 321 DLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG---YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVA 397 (482)
T ss_pred HHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC---CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhh
Confidence 6665432 23 89999999999999999999877 889999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhh
Q 011605 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 470 (481)
Q Consensus 396 ~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (481)
++|+|+|++++||+|+.|....+|+||+||.||.|+.|.++.|++..+....+.+.+.+..+. +.+|+=+.+
T Consensus 398 aRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~---q~vP~wl~~ 469 (482)
T KOG0335|consen 398 ARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEAN---QEVPQWLSE 469 (482)
T ss_pred hcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhc---ccCcHHHHh
Confidence 999999999999999999999999999999999999999999999888888888888887777 777777766
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-47 Score=340.80 Aligned_cols=380 Identities=29% Similarity=0.424 Sum_probs=322.0
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc---
Q 011605 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--- 98 (481)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~--- 98 (481)
..|++.. |++.|++++.+.||..|+-+|..+++-+++ |+|++..|.||||||.+|++|+++.+...+
T Consensus 19 ktFe~~g------LD~RllkAi~~lG~ekpTlIQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~ 88 (569)
T KOG0346|consen 19 KTFEEFG------LDSRLLKAITKLGWEKPTLIQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN 88 (569)
T ss_pred ccHHHhC------CCHHHHHHHHHhCcCCcchhhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcc
Confidence 4566664 999999999999999999999999888776 999999999999999999999999997753
Q ss_pred --cCCccEEEEcccHHHHHHHHHHHHHhccccC--ceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCc
Q 011605 99 --VRCLRALVVLPTRDLALQVKDVFAAIAPAVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174 (481)
Q Consensus 99 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (481)
..++.++|++||++|+.|.+..+.++....+ +++.-+.++.+...... .+...++
T Consensus 89 ~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~---------------------~L~d~pd 147 (569)
T KOG0346|consen 89 DGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSV---------------------ALMDLPD 147 (569)
T ss_pred cccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHH---------------------HHccCCC
Confidence 3567899999999999999998888765553 44444443433333322 3345679
Q ss_pred EEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccc
Q 011605 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254 (481)
Q Consensus 175 Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (481)
|+|+||..+..++..+....+..++++|+|||+.+++-||.+.+..+...++
T Consensus 148 IvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LP---------------------------- 199 (569)
T KOG0346|consen 148 IVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLP---------------------------- 199 (569)
T ss_pred eEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCC----------------------------
Confidence 9999999999999886556788899999999999999999999999988875
Q ss_pred cccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHh-cCCC
Q 011605 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEE 333 (481)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~ 333 (481)
+..|.++||||+.+++..+-.+.+.+|+++.........+.....|.+.+....|+..+..++.- .-.+
T Consensus 200 ----------r~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~g 269 (569)
T KOG0346|consen 200 ----------RIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRG 269 (569)
T ss_pred ----------chhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcC
Confidence 35589999999999999999999999999988888877888889999999999999988888754 3678
Q ss_pred eEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc--------------------
Q 011605 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-------------------- 393 (481)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~-------------------- 393 (481)
+.|||+|+++.|..+.-.|.++| +...+++|.++..-|..+++.|.+|-.+++|||+
T Consensus 270 KsliFVNtIdr~YrLkLfLeqFG---iksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~ 346 (569)
T KOG0346|consen 270 KSLIFVNTIDRCYRLKLFLEQFG---IKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKN 346 (569)
T ss_pred ceEEEEechhhhHHHHHHHHHhC---cHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccC
Confidence 99999999999999999999999 8999999999999999999999999999999998
Q ss_pred ---------------ccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcC--
Q 011605 394 ---------------AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN-- 456 (481)
Q Consensus 394 ---------------~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~-- 456 (481)
..++|+|+..+..|++|+.|.+..+|+||+||.+|.++.|.++.|+.+.+..-..++...+..
T Consensus 347 ~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~~ 426 (569)
T KOG0346|consen 347 PKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDEN 426 (569)
T ss_pred CCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhHH
Confidence 245799999999999999999999999999999999999999999999877633333333222
Q ss_pred -----CCCCCCCCCchhhhhhh
Q 011605 457 -----DSCPIHSIPSSLIESLR 473 (481)
Q Consensus 457 -----~~~~~~~~~~~~~~~~~ 473 (481)
.-+.+.++..+-++.|+
T Consensus 427 ~~~~~qilqPY~f~~eevesfr 448 (569)
T KOG0346|consen 427 RQEGRQILQPYQFRMEEVESFR 448 (569)
T ss_pred hhcCccccccccchHHHHHHHH
Confidence 24566677766666664
No 26
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-46 Score=341.79 Aligned_cols=382 Identities=27% Similarity=0.425 Sum_probs=336.4
Q ss_pred cccCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHH
Q 011605 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (481)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~ 93 (481)
-.+.|.++.+|+.+ +++..|..++....|.+|++.|.++++..+. +++++-.|.||||||.+++.+++..
T Consensus 215 g~s~~rpvtsfeh~------gfDkqLm~airk~Ey~kptpiq~qalptals----grdvigIAktgSgktaAfi~pm~~h 284 (731)
T KOG0339|consen 215 GSSPPRPVTSFEHF------GFDKQLMTAIRKSEYEKPTPIQCQALPTALS----GRDVIGIAKTGSGKTAAFIWPMIVH 284 (731)
T ss_pred cCCCCCCcchhhhc------CchHHHHHHHhhhhcccCCcccccccccccc----cccchheeeccCcchhHHHHHHHHH
Confidence 34677888888888 4999999999999999999999888776664 9999999999999999999999888
Q ss_pred HHHhc----cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhh
Q 011605 94 LSNRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169 (481)
Q Consensus 94 l~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (481)
+...+ ..+|..+|++||++|+.|++.+++++++..|++++.++|+.+..++... +
T Consensus 285 imdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~---------------------L 343 (731)
T KOG0339|consen 285 IMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKE---------------------L 343 (731)
T ss_pred hcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHh---------------------h
Confidence 86642 4678999999999999999999999999999999999999998777654 3
Q ss_pred cCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhh
Q 011605 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (481)
Q Consensus 170 ~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (481)
..+++|+|+||++|.+.+.. +...+.+.+++|+||++.|.+.+|...+..|...++
T Consensus 344 k~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir----------------------- 399 (731)
T KOG0339|consen 344 KEGAEIVVATPGRLIDMVKM-KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR----------------------- 399 (731)
T ss_pred hcCCeEEEechHHHHHHHHh-hcccceeeeEEEEechhhhhccccHHHHHHHHhhcC-----------------------
Confidence 47889999999999999876 457789999999999999999999999999999886
Q ss_pred hhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHH-H
Q 011605 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL-Q 328 (481)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l-~ 328 (481)
|.-|++++|||....+..+++..+.+|+.+.............+.+.+......|+.-+..-| .
T Consensus 400 ---------------pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~ 464 (731)
T KOG0339|consen 400 ---------------PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVE 464 (731)
T ss_pred ---------------CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhh
Confidence 444899999999999999999999999887666544444444455555666666766555444 4
Q ss_pred hcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEE
Q 011605 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (481)
Q Consensus 329 ~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi 408 (481)
....+++|+|+.....+++++..|+-.+ +++..+||.|+..+|.+++..|+++...|||+|+...+|+|++.++.||
T Consensus 465 f~S~gkvlifVTKk~~~e~i~a~Lklk~---~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVv 541 (731)
T KOG0339|consen 465 FSSEGKVLIFVTKKADAEEIAANLKLKG---FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVV 541 (731)
T ss_pred hccCCcEEEEEeccCCHHHHHHHhcccc---ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceee
Confidence 4467899999999999999999998766 8999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhhh
Q 011605 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 471 (481)
Q Consensus 409 ~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (481)
+|+...++..+.||+||.||.|..|.+|.++...|.+...++++.|+.++ +.+|..+-++
T Consensus 542 nyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~ag---QnVP~~l~dl 601 (731)
T KOG0339|consen 542 NYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAG---QNVPDELMDL 601 (731)
T ss_pred cccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhcc---ccCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999 8889887654
No 27
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=7.5e-46 Score=379.95 Aligned_cols=356 Identities=19% Similarity=0.242 Sum_probs=265.7
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
|++.+.++++++||..|+++|.++++.++. |+|+++.+|||||||++|++|++..+..+ .+.++||++||++|+
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~~--~~~~aL~l~PtraLa 94 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALADD--PRATALYLAPTKALA 94 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhhC--CCcEEEEEcChHHHH
Confidence 899999999999999999999999999876 99999999999999999999999998764 456899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCC--
Q 011605 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-- 192 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~-- 192 (481)
.|+.+.++++. ..++++..+.|+.+..... .+..+++|+|+||+++...+.....
T Consensus 95 ~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~----------------------~i~~~~~IivtTPd~L~~~~L~~~~~~ 151 (742)
T TIGR03817 95 ADQLRAVRELT-LRGVRPATYDGDTPTEERR----------------------WAREHARYVLTNPDMLHRGILPSHARW 151 (742)
T ss_pred HHHHHHHHHhc-cCCeEEEEEeCCCCHHHHH----------------------HHhcCCCEEEEChHHHHHhhccchhHH
Confidence 99999999987 3478888888887754331 2335579999999999754322111
Q ss_pred -cccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeee
Q 011605 193 -FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (481)
Q Consensus 193 -~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (481)
..++++++||+||+|.+.. .|+.++..++.++...... .....|.++
T Consensus 152 ~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~-------------------------------~g~~~q~i~ 199 (742)
T TIGR03817 152 ARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCAR-------------------------------YGASPVFVL 199 (742)
T ss_pred HHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHh-------------------------------cCCCCEEEE
Confidence 1378899999999999854 5777777777665432210 002348999
Q ss_pred eceeeccCchhhhcccccCCceeecCCccccCcccccccccc----c----------CCCchHHHHHHHHHhcCCCeEEE
Q 011605 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI----C----------ESKLKPLYLVALLQSLGEEKCIV 337 (481)
Q Consensus 272 ~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------~~~~k~~~l~~~l~~~~~~~~lV 337 (481)
+|||..+.... ....+..+..................+... . ....+...+..++.. +.++||
T Consensus 200 ~SATi~n~~~~-~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IV 276 (742)
T TIGR03817 200 ASATTADPAAA-ASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLT 276 (742)
T ss_pred EecCCCCHHHH-HHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEE
Confidence 99999876543 333334443322211111100000000000 0 001233344444443 679999
Q ss_pred EecchhhHHHHHHHHhhcc-----ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCC
Q 011605 338 FTSSVESTHRLCTLLNHFG-----ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412 (481)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~ 412 (481)
||+|++.++.+++.|++.. ..+..+..+||++..++|.+++++|++|+.++||||+++++|+|+|++++||+++.
T Consensus 277 F~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~ 356 (742)
T TIGR03817 277 FVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGF 356 (742)
T ss_pred EcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCC
Confidence 9999999999999987631 12357889999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHhhhcccCCCCccEEEEeecc--hHHHHHHHHHHh
Q 011605 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKD--EVKRFKKLLQKA 454 (481)
Q Consensus 413 ~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~--~~~~~~~~~~~~ 454 (481)
|.+..+|+||+||+||.|+.|.++++...+ |...+.+..+.+
T Consensus 357 P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 357 PGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALF 400 (742)
T ss_pred CCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHh
Confidence 999999999999999999999999988643 444445444444
No 28
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-46 Score=340.18 Aligned_cols=370 Identities=34% Similarity=0.518 Sum_probs=297.9
Q ss_pred ccCCCCCCCCCCCHHHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc----
Q 011605 24 FEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---- 98 (481)
Q Consensus 24 ~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~---- 98 (481)
|....|.++ ||++-+.+.|++ |+++.|+..|.++++.++. |+|++|.++||+|||++|++|+++.+..-.
T Consensus 133 fts~~f~~L-GL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~ 207 (708)
T KOG0348|consen 133 FTSAAFASL-GLHPHLVSHLNTKMKISAPTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ 207 (708)
T ss_pred cccccchhc-CCCHHHHHHHHHHhccCccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc
Confidence 455555555 699999999996 9999999999999999887 999999999999999999999999987632
Q ss_pred -cCCccEEEEcccHHHHHHHHHHHHHhccccC-ceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEE
Q 011605 99 -VRCLRALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (481)
Q Consensus 99 -~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 176 (481)
..|+-+||++||++|+.|.++.++++...+. +-.+.+.|+.....+ ..+++.+++|+
T Consensus 208 Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSE---------------------KARLRKGiNIL 266 (708)
T KOG0348|consen 208 RSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSE---------------------KARLRKGINIL 266 (708)
T ss_pred ccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccH---------------------HHHHhcCceEE
Confidence 3577899999999999999999999987764 333445555443222 23567899999
Q ss_pred EeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccc
Q 011605 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (481)
Q Consensus 177 i~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (481)
|+||++|.+.+.+-..+.++.+.++|+||++.+++.+|...+..|+..+......
T Consensus 267 IgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~------------------------- 321 (708)
T KOG0348|consen 267 IGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNA------------------------- 321 (708)
T ss_pred EcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccch-------------------------
Confidence 9999999999998888889999999999999999999999999999887432100
Q ss_pred cccCC-CCCcceeeeeeceeeccCchhhhcccccCCceeecCCcc------------------------ccCcccccccc
Q 011605 257 RGFKD-KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR------------------------YKLPERLESYK 311 (481)
Q Consensus 257 ~~~~~-~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~ 311 (481)
.+++ ..-+..+.+++|||+.+....+....+++|+.+...... ..+|+......
T Consensus 322 -e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry 400 (708)
T KOG0348|consen 322 -ECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRY 400 (708)
T ss_pred -hcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhce
Confidence 0111 111245788999999999999999999999887722111 12233333334
Q ss_pred cccCCCchHHHHHHHHHhc----CCCeEEEEecchhhHHHHHHHHhhccc-------------------cceeEEEcccc
Q 011605 312 LICESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGE-------------------LRIKIKEYSGL 368 (481)
Q Consensus 312 ~~~~~~~k~~~l~~~l~~~----~~~~~lVf~~s~~~~~~l~~~L~~~~~-------------------~~~~~~~~~~~ 368 (481)
.+.+...++..|..++.+. ...++|||+++.+.++--+..+...-. .+..++.+||+
T Consensus 401 ~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGs 480 (708)
T KOG0348|consen 401 TVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGS 480 (708)
T ss_pred EecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCc
Confidence 4555566666666666443 566999999998888877777654210 33468889999
Q ss_pred cChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHH
Q 011605 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445 (481)
Q Consensus 369 ~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 445 (481)
|...+|..+++.|...+..||+||++.++|+|+|.++.||.|++|.++++|++|+||..|.|..|.++.|+.+.+.+
T Consensus 481 m~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eae 557 (708)
T KOG0348|consen 481 MEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAE 557 (708)
T ss_pred hhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHH
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999998887
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-47 Score=348.17 Aligned_cols=383 Identities=31% Similarity=0.454 Sum_probs=302.6
Q ss_pred CCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCC-CCEEEECCCCchhHHHhHHHHHHHHHH
Q 011605 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSN 96 (481)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~-~~~l~~~~tG~GKT~~~~~~~~~~l~~ 96 (481)
+.+++.|.++ .||.+++++|+++||+.|+++|.-.++.++. | .+++-.|.||||||++|-+|++..+..
T Consensus 177 ~~DvsAW~~l------~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~----gk~DIlGaAeTGSGKTLAFGIPiv~~l~~ 246 (731)
T KOG0347|consen 177 KVDVSAWKNL------FLPMEILRALSNLGFSRPTEIQSLVLPAAIR----GKVDILGAAETGSGKTLAFGIPIVERLLE 246 (731)
T ss_pred ccChHHHhcC------CCCHHHHHHHHhcCCCCCccchhhcccHhhc----cchhcccccccCCCceeeecchhhhhhhh
Confidence 3444445444 4999999999999999999999888887775 6 789999999999999999999985533
Q ss_pred h----------ccCCcc--EEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhh
Q 011605 97 R----------AVRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 164 (481)
Q Consensus 97 ~----------~~~~~~--~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (481)
. ...+++ .||++||++|+.|+...+..+++..++.+..++|+....+++..+
T Consensus 247 ~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL---------------- 310 (731)
T KOG0347|consen 247 SSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLL---------------- 310 (731)
T ss_pred ccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHH----------------
Confidence 1 123445 999999999999999999999999999999999999888776443
Q ss_pred HHHhhcCCCcEEEeCchHHHHHHhcCCCc--ccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccc
Q 011605 165 VLQELQSAVDILVATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242 (481)
Q Consensus 165 ~~~~~~~~~~Ili~T~~~l~~~l~~~~~~--~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (481)
...++|+|+||++||.++...... .+++++++|+||+++|+..++-+.+..++..+.....
T Consensus 311 -----~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~------------ 373 (731)
T KOG0347|consen 311 -----NQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQK------------ 373 (731)
T ss_pred -----hcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhc------------
Confidence 346799999999999999875442 5888999999999999999999999999988752211
Q ss_pred cccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhc----------------------ccc-cCCceeecCCc
Q 011605 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ----------------------LDL-HHPLFLTTGET 299 (481)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~----------------------~~~-~~~~~~~~~~~ 299 (481)
.+..|.+++|||++-....-.. .++ ..|.++.....
T Consensus 374 ---------------------~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q 432 (731)
T KOG0347|consen 374 ---------------------NRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQ 432 (731)
T ss_pred ---------------------ccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcc
Confidence 1344899999999743222111 011 12233322222
Q ss_pred cccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHH
Q 011605 300 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 379 (481)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~ 379 (481)
. .....+..-.+.++..+|..++.-++..+ .+++|||||++..+..+.-.|..++ +....+|+.|..+.|..-++
T Consensus 433 ~-~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~---i~p~~LHA~M~QKqRLknLE 507 (731)
T KOG0347|consen 433 S-ATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLD---IPPLPLHASMIQKQRLKNLE 507 (731)
T ss_pred h-hHHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhcC---CCCchhhHHHHHHHHHHhHH
Confidence 2 11222222334445555555555544444 6899999999999999999999776 88899999999999999999
Q ss_pred HHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCC-C
Q 011605 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADND-S 458 (481)
Q Consensus 380 ~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 458 (481)
.|++...-|||||+++++|+|||+++|||||..|.+...|+||.||..|.+..|..+.++.+.+...+.++++-+++. .
T Consensus 508 kF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 508 KFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred HHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887653 4
Q ss_pred CCCCCCCchhh
Q 011605 459 CPIHSIPSSLI 469 (481)
Q Consensus 459 ~~~~~~~~~~~ 469 (481)
+|.+++.+.+.
T Consensus 588 lpifPv~~~~m 598 (731)
T KOG0347|consen 588 LPIFPVETDIM 598 (731)
T ss_pred CCceeccHHHH
Confidence 46655544443
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.2e-45 Score=360.54 Aligned_cols=334 Identities=22% Similarity=0.346 Sum_probs=252.7
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 45 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.+||..|+++|.++++.++. ++++++.+|||+|||++|++|++. .+..+||++|+++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~-------~~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC-------SDGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH-------cCCcEEEEecHHHHHHHHHHHHHHc
Confidence 48999999999999999886 889999999999999999998774 2347999999999999998888765
Q ss_pred ccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCc-ccCCccEEEE
Q 011605 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVV 203 (481)
Q Consensus 125 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~-~~~~~~~iVv 203 (481)
++.+..+.++....+....+. ......++|+++||+.+.........+ ...+++++||
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i~~-----------------~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iVi 133 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNVLT-----------------DLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAV 133 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHH-----------------HHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEE
Confidence 788888888776544322211 112234799999999875422111112 4567999999
Q ss_pred echhHhhHHH--HhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCch
Q 011605 204 DETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281 (481)
Q Consensus 204 DE~H~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~ 281 (481)
||||++.+++ |+..+..+...... ++..+++++|||+.....
T Consensus 134 DEaH~i~~~g~~fr~~~~~l~~l~~~------------------------------------~~~~~~l~lTAT~~~~~~ 177 (470)
T TIGR00614 134 DEAHCISQWGHDFRPDYKALGSLKQK------------------------------------FPNVPIMALTATASPSVR 177 (470)
T ss_pred eCCcccCccccccHHHHHHHHHHHHH------------------------------------cCCCceEEEecCCCHHHH
Confidence 9999988765 44444443322211 134578999999987654
Q ss_pred hhh--cccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHH-hcCCCeEEEEecchhhHHHHHHHHhhcccc
Q 011605 282 KLA--QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGEL 358 (481)
Q Consensus 282 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~ 358 (481)
... ...+..+...........+ .+............+..++. ...+.++||||+++++++.+++.|...+
T Consensus 178 ~di~~~l~l~~~~~~~~s~~r~nl-----~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g-- 250 (470)
T TIGR00614 178 EDILRQLNLKNPQIFCTSFDRPNL-----YYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG-- 250 (470)
T ss_pred HHHHHHcCCCCCcEEeCCCCCCCc-----EEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC--
Confidence 322 2233445444333222221 11222222234445556565 3455667999999999999999999876
Q ss_pred ceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEE
Q 011605 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (481)
Q Consensus 359 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 438 (481)
..+..+|++|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.|...|+||+||+||.|..|.|+++
T Consensus 251 -~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 251 -IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred -CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecchHHHHHHHHHHh
Q 011605 439 LHKDEVKRFKKLLQKA 454 (481)
Q Consensus 439 ~~~~~~~~~~~~~~~~ 454 (481)
+...|...++.++...
T Consensus 330 ~~~~d~~~~~~~~~~~ 345 (470)
T TIGR00614 330 YAPADINRLRRLLMEE 345 (470)
T ss_pred echhHHHHHHHHHhcC
Confidence 9999998888887654
No 31
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.1e-44 Score=368.62 Aligned_cols=345 Identities=20% Similarity=0.272 Sum_probs=258.9
Q ss_pred CCHHHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 35 l~~~l~~~~~~-~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
+...+...++. ||+..+|+.|.++++.++. |+++++.+|||+|||++|++|++.. ...+|||+|+++|
T Consensus 444 w~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~~-------~GiTLVISPLiSL 512 (1195)
T PLN03137 444 WTKKLEVNNKKVFGNHSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALIC-------PGITLVISPLVSL 512 (1195)
T ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHHc-------CCcEEEEeCHHHH
Confidence 55667777775 8999999999999999886 9999999999999999999998742 3479999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHH---HHhcC
Q 011605 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD---HINAT 190 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~---~l~~~ 190 (481)
+.++...+... ++.+..+.++.........+... ......++|+++||+++.. ++...
T Consensus 513 mqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l---------------~s~~g~~~ILyvTPERL~~~d~ll~~L 573 (1195)
T PLN03137 513 IQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQEL---------------SSEYSKYKLLYVTPEKVAKSDSLLRHL 573 (1195)
T ss_pred HHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHH---------------HhcCCCCCEEEEChHHhhcchHHHHHH
Confidence 98777666654 88888888888765553322110 0011457999999999852 12211
Q ss_pred CCc-ccCCccEEEEechhHhhHHH--HhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcce
Q 011605 191 RGF-TLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (481)
Q Consensus 191 ~~~-~~~~~~~iVvDE~H~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (481)
..+ ....+++|||||||++..|+ |+..+..+-.+... ++..
T Consensus 574 ~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~------------------------------------fp~v 617 (1195)
T PLN03137 574 ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK------------------------------------FPNI 617 (1195)
T ss_pred HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHh------------------------------------CCCC
Confidence 111 23458899999999998886 55555543222111 1345
Q ss_pred eeeeeceeeccCchhhhcc--cccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHh-cCCCeEEEEecchhh
Q 011605 268 VKMVLSATLTQDPNKLAQL--DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVES 344 (481)
Q Consensus 268 ~~v~~sat~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~lVf~~s~~~ 344 (481)
+++++|||.+......+.. .+..+.++........+ .+.+..........+..++.. ..++++||||.+++.
T Consensus 618 PilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL-----~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke 692 (1195)
T PLN03137 618 PVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNL-----WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMD 692 (1195)
T ss_pred CeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccce-----EEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhH
Confidence 7889999998776553332 23334333332222211 122222222223445555543 346689999999999
Q ss_pred HHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhh
Q 011605 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424 (481)
Q Consensus 345 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~G 424 (481)
++.+++.|...+ +.+..+||+|+..+|..+++.|..|+.+|||||.++++|||+|++++||+++.|.+...|+|++|
T Consensus 693 ~E~LAe~L~~~G---ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriG 769 (1195)
T PLN03137 693 CEKVAERLQEFG---HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 769 (1195)
T ss_pred HHHHHHHHHHCC---CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhc
Confidence 999999999877 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCccEEEEeecchHHHHHHHHHH
Q 011605 425 RTARAGQLGRCFTLLHKDEVKRFKKLLQK 453 (481)
Q Consensus 425 R~~R~~~~g~~~~~~~~~~~~~~~~~~~~ 453 (481)
|+||.|..|.|++|+...|...++.+++.
T Consensus 770 RAGRDG~~g~cILlys~~D~~~~~~lI~~ 798 (1195)
T PLN03137 770 RAGRDGQRSSCVLYYSYSDYIRVKHMISQ 798 (1195)
T ss_pred ccCCCCCCceEEEEecHHHHHHHHHHHhc
Confidence 99999999999999999999888888864
No 32
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-46 Score=326.03 Aligned_cols=360 Identities=24% Similarity=0.342 Sum_probs=303.0
Q ss_pred CCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccC
Q 011605 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~ 100 (481)
.++|++++ |.|++++.+..|+|..|+.+|..+++-++..- .+|+|..+..|+|||.+|.+.|+.++... ..
T Consensus 89 ~ksFeeL~------LkPellkgly~M~F~kPskIQe~aLPlll~~P--p~nlIaQsqsGtGKTaaFvL~MLsrvd~~-~~ 159 (477)
T KOG0332|consen 89 AKSFEELR------LKPELLKGLYAMKFQKPSKIQETALPLLLAEP--PQNLIAQSQSGTGKTAAFVLTMLSRVDPD-VV 159 (477)
T ss_pred cccHHhhC------CCHHHHhHHHHhccCCcchHHHhhcchhhcCC--chhhhhhhcCCCchhHHHHHHHHHhcCcc-cc
Confidence 45677775 99999999999999999999999998887632 57899999999999999999999887765 45
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCc
Q 011605 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~ 180 (481)
.|.++.++||++|+.|+.+-+.+.+++.++.+.....+....... .-..+|+|+||
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~------------------------~i~eqIviGTP 215 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGN------------------------KLTEQIVIGTP 215 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCC------------------------cchhheeeCCC
Confidence 678999999999999999999999988877776666555211110 01138999999
Q ss_pred hHHHHHHhcCCCcccCCccEEEEechhHhhH-HHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccccccc
Q 011605 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
+.+.+++.+..-+.+..+..+|+|||+.+++ .+|++..-.+...+.
T Consensus 216 Gtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP--------------------------------- 262 (477)
T KOG0332|consen 216 GTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP--------------------------------- 262 (477)
T ss_pred ccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcC---------------------------------
Confidence 9999999886667788999999999999876 346655555544442
Q ss_pred CCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEe
Q 011605 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (481)
Q Consensus 260 ~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~ 339 (481)
+..+.+++|||.......++.....++..+....+...+....+.|........|...+.++.....-++.+|||
T Consensus 263 -----~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc 337 (477)
T KOG0332|consen 263 -----RNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFC 337 (477)
T ss_pred -----CcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEE
Confidence 355899999999999999999999999888887777777666666666667788999998888777788999999
Q ss_pred cchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCC-----
Q 011605 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA----- 414 (481)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~----- 414 (481)
.+.+.+.++++.+.+.| ..+..+||.+...+|..+++.|++|..+|||+|+.+.+|+|++.+++||+|++|.
T Consensus 338 ~tk~ta~~l~~~m~~~G---h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~ 414 (477)
T KOG0332|consen 338 HTKATAMWLYEEMRAEG---HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGE 414 (477)
T ss_pred eehhhHHHHHHHHHhcC---ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCC
Confidence 99999999999999877 8999999999999999999999999999999999999999999999999999984
Q ss_pred -ChhHHHHHhhhcccCCCCccEEEEeecchH-HHHHHHHHHh
Q 011605 415 -YIKTYIHRAGRTARAGQLGRCFTLLHKDEV-KRFKKLLQKA 454 (481)
Q Consensus 415 -s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-~~~~~~~~~~ 454 (481)
+...|+||+||+||.|+.|.++-+++..+. +.+..|.+..
T Consensus 415 pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F 456 (477)
T KOG0332|consen 415 PDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHF 456 (477)
T ss_pred CCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHH
Confidence 477999999999999999999999887654 4444555555
No 33
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.4e-43 Score=356.75 Aligned_cols=340 Identities=23% Similarity=0.321 Sum_probs=256.2
Q ss_pred CCHHHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 35 l~~~l~~~~~~-~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
++......+++ +||..|+++|.++++.++. ++++++.+|||+|||++|++|++.. ...+||++|+++|
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal~~-------~g~tlVisPl~sL 77 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPALVL-------DGLTLVVSPLISL 77 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHc-------CCCEEEEecHHHH
Confidence 44445566665 8999999999999999886 8999999999999999999988742 2379999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCc
Q 011605 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
+.|+...++.. |+.+..+.+..........+. .......+++++||+.+...... ..+
T Consensus 78 ~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~-----------------~~~~g~~~il~~tPe~l~~~~~~-~~l 135 (607)
T PRK11057 78 MKDQVDQLLAN----GVAAACLNSTQTREQQLEVMA-----------------GCRTGQIKLLYIAPERLMMDNFL-EHL 135 (607)
T ss_pred HHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHH-----------------HHhCCCCcEEEEChHHhcChHHH-HHH
Confidence 99999888876 777777777765544322211 11123468999999998632111 112
Q ss_pred ccCCccEEEEechhHhhHHH--HhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeee
Q 011605 194 TLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (481)
...+++++||||||++.+++ |+..+..+...... ++..++++
T Consensus 136 ~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~------------------------------------~p~~~~v~ 179 (607)
T PRK11057 136 AHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR------------------------------------FPTLPFMA 179 (607)
T ss_pred hhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh------------------------------------CCCCcEEE
Confidence 34578999999999988765 34444333222111 13457899
Q ss_pred eceeeccCchhhh--cccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHH
Q 011605 272 LSATLTQDPNKLA--QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349 (481)
Q Consensus 272 ~sat~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~ 349 (481)
+|||++....... ...+.++...........+ .+. ......+...+...+....+.++||||+++++++.++
T Consensus 180 lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl-----~~~-v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la 253 (607)
T PRK11057 180 LTATADDTTRQDIVRLLGLNDPLIQISSFDRPNI-----RYT-LVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTA 253 (607)
T ss_pred EecCCChhHHHHHHHHhCCCCeEEEECCCCCCcc-----eee-eeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHH
Confidence 9999987654422 2234445444332222111 111 1222334455666677777889999999999999999
Q ss_pred HHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccC
Q 011605 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (481)
Q Consensus 350 ~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~ 429 (481)
+.|+..+ ..+..+|++|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.|..+|+|++||+||.
T Consensus 254 ~~L~~~g---~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~ 330 (607)
T PRK11057 254 ARLQSRG---ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD 330 (607)
T ss_pred HHHHhCC---CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCC
Confidence 9999876 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeecchHHHHHHHHH
Q 011605 430 GQLGRCFTLLHKDEVKRFKKLLQ 452 (481)
Q Consensus 430 ~~~g~~~~~~~~~~~~~~~~~~~ 452 (481)
|.+|.|+++++..|...++.++.
T Consensus 331 G~~~~~ill~~~~d~~~~~~~~~ 353 (607)
T PRK11057 331 GLPAEAMLFYDPADMAWLRRCLE 353 (607)
T ss_pred CCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999998877776664
No 34
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-44 Score=358.36 Aligned_cols=381 Identities=29% Similarity=0.475 Sum_probs=331.5
Q ss_pred cCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 011605 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~ 95 (481)
.-|.++.+|+++. ++..+++.++.+||..|+++|.+||++|+. |+++|..+-||+|||++|++|++..+.
T Consensus 359 ~~pkpv~sW~q~g------l~~~il~tlkkl~y~k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirhi~ 428 (997)
T KOG0334|consen 359 ECPKPVTSWTQCG------LSSKILETLKKLGYEKPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRHIK 428 (997)
T ss_pred CCCcccchHhhCC------chHHHHHHHHHhcCCCCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhhhh
Confidence 6789999999995 999999999999999999999999999987 999999999999999999999987665
Q ss_pred Hh----ccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcC
Q 011605 96 NR----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (481)
Q Consensus 96 ~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (481)
.. ...+|.++|++||++|+.|+.+++..++..+++.+++++|+..+...... +.+
T Consensus 429 dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiae---------------------lkR 487 (997)
T KOG0334|consen 429 DQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAE---------------------LKR 487 (997)
T ss_pred cCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHH---------------------Hhc
Confidence 43 23588999999999999999999999999999999999999988777654 446
Q ss_pred CCcEEEeCchHHHHHHhcCCC--cccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhh
Q 011605 172 AVDILVATPGRLMDHINATRG--FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (481)
Q Consensus 172 ~~~Ili~T~~~l~~~l~~~~~--~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (481)
++.|+||||+..++.+-...+ ..+.+..++|+||++.|.+.+|...+-.|+..++
T Consensus 488 g~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr----------------------- 544 (997)
T KOG0334|consen 488 GAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR----------------------- 544 (997)
T ss_pred CCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc-----------------------
Confidence 789999999999988765332 2566677999999999999999988888877774
Q ss_pred hhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHh
Q 011605 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329 (481)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 329 (481)
|.-|++++|||.+..+..+....++.|+.+...............+.+......|+..|.+++..
T Consensus 545 ---------------pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e 609 (997)
T KOG0334|consen 545 ---------------PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGE 609 (997)
T ss_pred ---------------hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHH
Confidence 34489999999998888888888888877666655555555555566666688899999888855
Q ss_pred c-CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEE
Q 011605 330 L-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (481)
Q Consensus 330 ~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi 408 (481)
. ..+++||||.+...|..+.+.|.+.+ +.+..+||+.+..+|+..+++|+++.+.+||+|+.+++|+|++.+..||
T Consensus 610 ~~e~~~tiiFv~~qe~~d~l~~~L~~ag---~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvv 686 (997)
T KOG0334|consen 610 RYEDGKTIIFVDKQEKADALLRDLQKAG---YNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVV 686 (997)
T ss_pred HhhcCCEEEEEcCchHHHHHHHHHHhcC---cchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEE
Confidence 4 57899999999999999999999877 7877899999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhhh
Q 011605 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIES 471 (481)
Q Consensus 409 ~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (481)
+|+.|.....|.+|.||+||.|+.|.|++|+.+.+.+....|++.++.+. ..+|..+..+
T Consensus 687 nyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~---~~~P~~l~~l 746 (997)
T KOG0334|consen 687 NYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSK---QPVPKLLQAL 746 (997)
T ss_pred EcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhcc---CCCchHHHHH
Confidence 99999999999999999999999999999999999999999999998888 4455444433
No 35
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.1e-44 Score=320.61 Aligned_cols=357 Identities=27% Similarity=0.454 Sum_probs=303.4
Q ss_pred cccCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHH
Q 011605 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (481)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~ 93 (481)
....|+++.+|-+.. +|..+++.+++-|+..|+|+|.+-++-++. |++++-.+-||||||++|.+|++-.
T Consensus 162 Gd~ipPPIksF~eMK------FP~~~L~~lk~KGI~~PTpIQvQGlPvvLs----GRDmIGIAfTGSGKTlvFvLP~imf 231 (610)
T KOG0341|consen 162 GDDIPPPIKSFKEMK------FPKPLLRGLKKKGIVHPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPVIMF 231 (610)
T ss_pred CCCCCCchhhhhhcc------CCHHHHHHHHhcCCCCCCceeecCcceEee----cCceeeEEeecCCceEEEeHHHHHH
Confidence 346788899999997 999999999999999999999888777665 9999999999999999999987654
Q ss_pred HHHh-------ccCCccEEEEcccHHHHHHHHHHHHHhcccc------CceEEEeccCcchHHHHHHHhhccccccCccC
Q 011605 94 LSNR-------AVRCLRALVVLPTRDLALQVKDVFAAIAPAV------GLSVGLAVGQSSIADEISELIKRPKLEAGICY 160 (481)
Q Consensus 94 l~~~-------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 160 (481)
.... ...+|..||+||+++|+.|...-+..++..+ .++..++-|+.+.....
T Consensus 232 ~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql--------------- 296 (610)
T KOG0341|consen 232 ALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQL--------------- 296 (610)
T ss_pred HHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHH---------------
Confidence 4332 2467899999999999999999888877644 35666777777665553
Q ss_pred ChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccc
Q 011605 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240 (481)
Q Consensus 161 ~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 240 (481)
..++.+..|+|+||++|++.+.+ +..++.-..++.+|||++|++.+|.+.+..++..+...+
T Consensus 297 ------~~v~~GvHivVATPGRL~DmL~K-K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QR----------- 358 (610)
T KOG0341|consen 297 ------DVVRRGVHIVVATPGRLMDMLAK-KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQR----------- 358 (610)
T ss_pred ------HHHhcCeeEEEcCcchHHHHHHH-hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhh-----------
Confidence 34557789999999999999987 346677788999999999999999999999998876543
Q ss_pred cccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchH
Q 011605 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320 (481)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 320 (481)
|.+++|||.+.....++..-+..|+.++...........++...+ ...+.|.
T Consensus 359 ---------------------------QTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEy-VkqEaKi 410 (610)
T KOG0341|consen 359 ---------------------------QTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEY-VKQEAKI 410 (610)
T ss_pred ---------------------------heeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHH-HHhhhhh
Confidence 789999999999999999989899888777665444333333322 3456777
Q ss_pred HHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCC
Q 011605 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400 (481)
Q Consensus 321 ~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvd 400 (481)
..+.+-+++. ..++||||....+...+.++|--.| +.+..+||+-+.++|...++.|+.|+-+|||+|+..+.|+|
T Consensus 411 VylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKG---VEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLD 486 (610)
T KOG0341|consen 411 VYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKG---VEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLD 486 (610)
T ss_pred hhHHHHhccC-CCceEEEeccccChHHHHHHHHHcc---ceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCC
Confidence 7888877765 5789999999999999999987666 88999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHH
Q 011605 401 VEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445 (481)
Q Consensus 401 l~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 445 (481)
+|++.+||+|+.|....+|.+|+||.||-|+.|.+..|+.++..+
T Consensus 487 Fp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~e 531 (610)
T KOG0341|consen 487 FPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEE 531 (610)
T ss_pred CccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchH
Confidence 999999999999999999999999999999999999999987543
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-43 Score=329.82 Aligned_cols=395 Identities=28% Similarity=0.392 Sum_probs=328.5
Q ss_pred cCCCCcccccC-CCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHH
Q 011605 7 KSMPVLPWMRS-PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 7 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~ 85 (481)
.+..+-.|... |++..+|.++.-+.. .++.+++.+...+|..|.+.|.++++-++. +.+++.|+|||+|||++
T Consensus 116 k~~k~~v~G~~~~~~l~~f~~lt~~~~--~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtla 189 (593)
T KOG0344|consen 116 KSNKINVDGFHLPPPLLSFSDLTYDYS--MNKRLLENLQELGFDEPTPIQKQAIPVFLE----KRDVLACAPTGSGKTLA 189 (593)
T ss_pred hcceeeccCCCCCCccccccccchhhh--hcHHHHHhHhhCCCCCCCcccchhhhhhhc----ccceEEeccCCCcchhh
Confidence 33455566644 999999999876666 889999999999999999999998887665 89999999999999999
Q ss_pred hHHHHHHHHHHhc----cCCccEEEEcccHHHHHHHHHHHHHhc--cccCceEEEeccCcchHHHHHHHhhccccccCcc
Q 011605 86 YALPIVQTLSNRA----VRCLRALVVLPTRDLALQVKDVFAAIA--PAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159 (481)
Q Consensus 86 ~~~~~~~~l~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 159 (481)
|.+|++..+.... ..+.+++|+.|+++|+.|.++++.++. ...+..+...........+...+.
T Consensus 190 f~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~---------- 259 (593)
T KOG0344|consen 190 FNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLS---------- 259 (593)
T ss_pred hhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhH----------
Confidence 9999999998765 567899999999999999999999998 444444444444433222221111
Q ss_pred CChhhHHHhhcCCCcEEEeCchHHHHHHhcCC-CcccCCccEEEEechhHhhHH-HHhhhHHHHHHhccccccccccccc
Q 011605 160 YDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDAS 237 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~-~~~~~~~~~iVvDE~H~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (481)
...++|+++||-.+..++.... .+.++.+..+|+||++.+.+. .|..++..++..+..
T Consensus 260 ----------~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s---------- 319 (593)
T KOG0344|consen 260 ----------DEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS---------- 319 (593)
T ss_pred ----------HHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC----------
Confidence 1235899999999988887642 357889999999999999988 888888888887754
Q ss_pred ccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCC
Q 011605 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK 317 (481)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (481)
+.+..-++|||.+....+|+...+.+...+..+..........+.........
T Consensus 320 ---------------------------~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~ 372 (593)
T KOG0344|consen 320 ---------------------------PDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEK 372 (593)
T ss_pred ---------------------------cchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecch
Confidence 33456688999999999999999988887777766555444445556666777
Q ss_pred chHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcccccc
Q 011605 318 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397 (481)
Q Consensus 318 ~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~ 397 (481)
.|...+..++...-..++|||+.+.+.|.++...|..+ .++++..+||+.+..+|++.+++|+.|++.+|+||+.+++
T Consensus 373 ~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~--~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~R 450 (593)
T KOG0344|consen 373 GKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIY--DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLAR 450 (593)
T ss_pred hHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhc--cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhc
Confidence 88888999888877889999999999999999998532 3478999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhh
Q 011605 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLI 469 (481)
Q Consensus 398 Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (481)
|+|+.+++.||+||.|.+..+|++|+||.||.|+.|.++.||...|.+.++.+++-+...+ +++|+-+.
T Consensus 451 GiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG---~evpe~~m 519 (593)
T KOG0344|consen 451 GIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSG---CEVPEKIM 519 (593)
T ss_pred cccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcC---CcchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888 55665543
No 37
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.1e-42 Score=353.51 Aligned_cols=335 Identities=20% Similarity=0.301 Sum_probs=255.1
Q ss_pred HHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHH
Q 011605 41 VALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (481)
Q Consensus 41 ~~~~~-~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~ 119 (481)
+.|++ |||.+++++|.++++.++. |+++++++|||+|||++|++|++. .+..++|++|+++|..|+..
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal~-------~~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPALL-------LKGLTVVISPLISLMKDQVD 71 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHHH-------cCCcEEEEcCCHHHHHHHHH
Confidence 34554 8999999999999999886 899999999999999999988773 12368999999999999998
Q ss_pred HHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCcc
Q 011605 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (481)
Q Consensus 120 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~ 199 (481)
.++.+ |+.+..+.++........... .......+|+++||+.+...... ......+++
T Consensus 72 ~l~~~----gi~~~~~~s~~~~~~~~~~~~-----------------~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~ 129 (591)
T TIGR01389 72 QLRAA----GVAAAYLNSTLSAKEQQDIEK-----------------ALVNGELKLLYVAPERLEQDYFL-NMLQRIPIA 129 (591)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHhCCCCCEEEEChhHhcChHHH-HHHhcCCCC
Confidence 88876 788888888776554422211 12234579999999998542221 113356799
Q ss_pred EEEEechhHhhHHH--HhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeec
Q 011605 200 YLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277 (481)
Q Consensus 200 ~iVvDE~H~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~ 277 (481)
++||||||++..++ |+..+..+...... ++..+++++|||.+
T Consensus 130 ~iViDEaH~i~~~g~~frp~y~~l~~l~~~------------------------------------~~~~~vi~lTAT~~ 173 (591)
T TIGR01389 130 LVAVDEAHCVSQWGHDFRPEYQRLGSLAER------------------------------------FPQVPRIALTATAD 173 (591)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHh------------------------------------CCCCCEEEEEeCCC
Confidence 99999999987764 44444444433221 13346899999988
Q ss_pred cCchhhhccc--ccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhc
Q 011605 278 QDPNKLAQLD--LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355 (481)
Q Consensus 278 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~ 355 (481)
......+... +..+..+........ .+........+...+.+.+....+.++||||++++.++.+++.|...
T Consensus 174 ~~~~~~i~~~l~~~~~~~~~~~~~r~n------l~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~ 247 (591)
T TIGR01389 174 AETRQDIRELLRLADANEFITSFDRPN------LRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ 247 (591)
T ss_pred HHHHHHHHHHcCCCCCCeEecCCCCCC------cEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC
Confidence 7655433322 233333322221111 11122223445666777777766789999999999999999999877
Q ss_pred cccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccE
Q 011605 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435 (481)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~ 435 (481)
+ +.+..+|++|+..+|..+++.|.+|+.+|||||+++++|+|+|++++||++++|.|..+|.|++||+||.|..+.|
T Consensus 248 g---~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~ 324 (591)
T TIGR01389 248 G---ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEA 324 (591)
T ss_pred C---CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceE
Confidence 6 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecchHHHHHHHHHH
Q 011605 436 FTLLHKDEVKRFKKLLQK 453 (481)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ 453 (481)
+++++..|...+..+++.
T Consensus 325 il~~~~~d~~~~~~~i~~ 342 (591)
T TIGR01389 325 ILLYSPADIALLKRRIEQ 342 (591)
T ss_pred EEecCHHHHHHHHHHHhc
Confidence 999998887766666543
No 38
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.1e-42 Score=358.88 Aligned_cols=336 Identities=23% Similarity=0.300 Sum_probs=250.9
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
||+.+.+.+.+.||.+|+++|.++++..+. .++|+++++|||+|||+++.++++..+.. +.+++|++|+++|+
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~---~g~nvlv~APTGSGKTlia~lail~~l~~----~~kal~i~P~raLa 80 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEAGLL---DGKNLLAAIPTASGKTLIAELAMLKAIAR----GGKALYIVPLRALA 80 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHHHHh---CCCcEEEECCCcchHHHHHHHHHHHHHhc----CCcEEEEeChHHHH
Confidence 999999999999999999999999987433 48899999999999999999999988764 34899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcc
Q 011605 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~ 194 (481)
.|+.+.++++.. .|+++..++|+...... ....++|+|+||+++..++.+.. .+
T Consensus 81 ~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~------------------------~l~~~~IiV~Tpek~~~llr~~~-~~ 134 (737)
T PRK02362 81 SEKFEEFERFEE-LGVRVGISTGDYDSRDE------------------------WLGDNDIIVATSEKVDSLLRNGA-PW 134 (737)
T ss_pred HHHHHHHHHhhc-CCCEEEEEeCCcCcccc------------------------ccCCCCEEEECHHHHHHHHhcCh-hh
Confidence 999999998654 48899999988654322 11346999999999988887532 45
Q ss_pred cCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeece
Q 011605 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 274 (481)
+.+++++|+||+|.+.+.+++..++.++.++.... +..+++++||
T Consensus 135 l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~-----------------------------------~~~qii~lSA 179 (737)
T PRK02362 135 LDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN-----------------------------------PDLQVVALSA 179 (737)
T ss_pred hhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC-----------------------------------CCCcEEEEcc
Confidence 78899999999999988888888888887765432 3458999999
Q ss_pred eeccC--chhhhccccc----CCceeecCC---ccccCcccccccccccCC-CchHHHHHHHHHhcCCCeEEEEecchhh
Q 011605 275 TLTQD--PNKLAQLDLH----HPLFLTTGE---TRYKLPERLESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVES 344 (481)
Q Consensus 275 t~~~~--~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lVf~~s~~~ 344 (481)
|+.+. ...|...... +|....... ....... ......... ......+.+.+. .++++||||++++.
T Consensus 180 Tl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~ 255 (737)
T PRK02362 180 TIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD--SQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRN 255 (737)
T ss_pred cCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc--ccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHH
Confidence 98642 2223321111 111000000 0000000 000000000 111222222222 46899999999999
Q ss_pred HHHHHHHHhhccc---------------------------------cceeEEEcccccChHHHHHHHHHHhcCCceEEEE
Q 011605 345 THRLCTLLNHFGE---------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391 (481)
Q Consensus 345 ~~~l~~~L~~~~~---------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~ 391 (481)
|+.+++.|..... ...+++++|++++..+|..+++.|++|.++||||
T Consensus 256 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLva 335 (737)
T PRK02362 256 AEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISS 335 (737)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEe
Confidence 9999988865311 0136899999999999999999999999999999
Q ss_pred ccccccCCCCCCCcEEEE----cC-----CCCChhHHHHHhhhcccCCCC--ccEEEEeecc
Q 011605 392 SDAMTRGMDVEGVNNVVN----YD-----KPAYIKTYIHRAGRTARAGQL--GRCFTLLHKD 442 (481)
Q Consensus 392 t~~l~~Gvdl~~~~~Vi~----~~-----~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~ 442 (481)
|+++++|+|+|+.++||. |+ .|.+..+|.||+|||||.|.+ |.+++++...
T Consensus 336 T~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 336 TPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred chhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 999999999999988886 44 577899999999999999977 8889988664
No 39
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-43 Score=311.63 Aligned_cols=373 Identities=26% Similarity=0.445 Sum_probs=323.2
Q ss_pred CCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc
Q 011605 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (481)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~ 98 (481)
.-+++|++.+ |+++|++.+..+||..|+.+|+.|+..++. |.+++..+.+|+|||.++..++++.+.-.
T Consensus 23 evvdsfddm~------L~e~LLrgiy~yGFekPSaIQqraI~p~i~----G~dv~~qaqsgTgKt~af~i~iLq~iD~~- 91 (397)
T KOG0327|consen 23 EVVDSFDDMN------LKESLLRGIYAYGFEKPSAIQQRAILPCIK----GHDVIAQAQSGTGKTAAFLISILQQIDMS- 91 (397)
T ss_pred HHhhhhhhcC------CCHHHHhHHHhhccCCchHHHhcccccccc----CCceeEeeeccccchhhhHHHHHhhcCcc-
Confidence 3456788886 999999999999999999999998776665 99999999999999999999888876443
Q ss_pred cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEe
Q 011605 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (481)
Q Consensus 99 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~ 178 (481)
.....+++++|+++|+.|.......++...+.++..+.|+.....+..... ...+.|+++
T Consensus 92 ~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~--------------------~~~~hivvG 151 (397)
T KOG0327|consen 92 VKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALL--------------------KDKPHIVVG 151 (397)
T ss_pred hHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhh--------------------ccCceeecC
Confidence 344579999999999999999999999888999998888887664433222 245799999
Q ss_pred CchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccc
Q 011605 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (481)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (481)
||+.+...+... .+....+.+.|+||++.++..+|.+.+..++.+...
T Consensus 152 TpgrV~dml~~~-~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~------------------------------- 199 (397)
T KOG0327|consen 152 TPGRVFDMLNRG-SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPS------------------------------- 199 (397)
T ss_pred CchhHHHhhccc-cccccceeEEeecchHhhhccchHHHHHHHHHHcCc-------------------------------
Confidence 999999998875 566778999999999999999999999999998853
Q ss_pred cCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEE
Q 011605 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338 (481)
Q Consensus 259 ~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf 338 (481)
..|.+++|||.+.........++.+|..+........ .+.+.++......+.|...+..+.+ .-...++|
T Consensus 200 -------~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if 269 (397)
T KOG0327|consen 200 -------DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIF 269 (397)
T ss_pred -------chhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHHHHHHH--hhhcceEE
Confidence 4589999999999999999999999988777666644 3445556666666668888888888 46789999
Q ss_pred ecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhH
Q 011605 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (481)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~ 418 (481)
|++...+..+...|..++ ..+..+|+.|...+|+.+++.|+.|..++||+|..+++|+|+..++.||+|+.|....+
T Consensus 270 ~nt~r~v~~l~~~L~~~~---~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~ 346 (397)
T KOG0327|consen 270 CNTRRKVDNLTDKLRAHG---FTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKEN 346 (397)
T ss_pred ecchhhHHHHHHHHhhCC---ceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhh
Confidence 999999999999997777 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhh
Q 011605 419 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 470 (481)
Q Consensus 419 ~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (481)
|++|+||+||.|++|.++.++...+...++++++++. .++.++|....+
T Consensus 347 yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~---~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 347 YIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYN---TPIEELPSNFAD 395 (397)
T ss_pred hhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcC---Ccceecccchhh
Confidence 9999999999999999999999999999999998774 455777776554
No 40
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=8.8e-43 Score=326.73 Aligned_cols=374 Identities=25% Similarity=0.403 Sum_probs=320.3
Q ss_pred CCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhcc
Q 011605 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~ 99 (481)
-...|+++. |-..++..|+..+|..|+++|..|++.++. +-++||.+..|+|||++|...+++.+... .
T Consensus 23 ~~~~fe~l~------l~r~vl~glrrn~f~~ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~-~ 91 (980)
T KOG4284|consen 23 CTPGFEQLA------LWREVLLGLRRNAFALPTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSR-S 91 (980)
T ss_pred CCCCHHHHH------HHHHHHHHHHhhcccCCCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcc-c
Confidence 334466664 888899999999999999999999888765 77999999999999999998888887765 4
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEe
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~ 178 (481)
..+.++|++||++++.|+.+.+..++..+ |.++.+..|++....+...+ ..++|+|+
T Consensus 92 ~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl----------------------k~~rIvIG 149 (980)
T KOG4284|consen 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL----------------------KQTRIVIG 149 (980)
T ss_pred CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh----------------------hhceEEec
Confidence 56789999999999999999999999865 89999999998765553322 34689999
Q ss_pred CchHHHHHHhcCCCcccCCccEEEEechhHhhH-HHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccccc
Q 011605 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (481)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (481)
||+++..+++. ..+..++++++|+|||+.+.+ .+|.+.+.-|+..++..+
T Consensus 150 tPGRi~qL~el-~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~r---------------------------- 200 (980)
T KOG4284|consen 150 TPGRIAQLVEL-GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIR---------------------------- 200 (980)
T ss_pred CchHHHHHHHh-cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhh----------------------------
Confidence 99999999887 447889999999999999988 789999998888876544
Q ss_pred ccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCC-------chHHHHHHHHHhc
Q 011605 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-------LKPLYLVALLQSL 330 (481)
Q Consensus 258 ~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~k~~~l~~~l~~~ 330 (481)
|++++|||.+.++++.+..++.+|..+........+....+.+...+... .|+..|.+++...
T Consensus 201 ----------Qv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~i 270 (980)
T KOG4284|consen 201 ----------QVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSI 270 (980)
T ss_pred ----------eeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhC
Confidence 78999999999999999999999998888777766655544444444432 2677788888888
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEc
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~ 410 (481)
+..+.||||+....|+-++.+|+..| +.+.++.|.|+..+|..+++.++.-..+|||+|+..++|||-+.++.||+.
T Consensus 271 py~QAlVF~~~~sra~~~a~~L~ssG---~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNi 347 (980)
T KOG4284|consen 271 PYVQALVFCDQISRAEPIATHLKSSG---LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNI 347 (980)
T ss_pred chHHHHhhhhhhhhhhHHHHHhhccC---CCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEec
Confidence 89999999999999999999999887 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhhhcccCCCCccEEEEeecchH-----HHHHHHHHHhcCCCCCCCCCCchh
Q 011605 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-----KRFKKLLQKADNDSCPIHSIPSSL 468 (481)
Q Consensus 411 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 468 (481)
+.|.+...|.||+|||||.|..|.++.|+..... .+..++....+..-.|.+++|-++
T Consensus 348 D~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m~~ria~~~~~~~~p~~p~P~~~ 410 (980)
T KOG4284|consen 348 DAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAMAYRIAVTVKRVVEPVHPLPGDL 410 (980)
T ss_pred CCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHHHHHHhhhheeeeccCCCCCccc
Confidence 9999999999999999999999999999887655 333566666666667778888777
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.8e-41 Score=353.20 Aligned_cols=369 Identities=21% Similarity=0.250 Sum_probs=257.2
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc-----cCCccEEEEc
Q 011605 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVL 108 (481)
Q Consensus 34 ~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~-----~~~~~~lil~ 108 (481)
-+++.+.+.+.+ +|..|+++|.++++.++. |+|+++++|||+|||+++.++++..+.... ..+.++||++
T Consensus 17 ~l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIs 91 (876)
T PRK13767 17 LLRPYVREWFKE-KFGTFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVS 91 (876)
T ss_pred hcCHHHHHHHHH-ccCCCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEc
Confidence 388889888887 788999999999999765 899999999999999999999998886532 2356799999
Q ss_pred ccHHHHHHHHHHHHH-------hc----ccc-CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEE
Q 011605 109 PTRDLALQVKDVFAA-------IA----PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (481)
Q Consensus 109 Pt~~L~~q~~~~~~~-------~~----~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 176 (481)
|+++|+.|+.+.+.. ++ ... ++.+...+|+.+....... +...++|+
T Consensus 92 PtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~---------------------l~~~p~Il 150 (876)
T PRK13767 92 PLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKM---------------------LKKPPHIL 150 (876)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHH---------------------HhCCCCEE
Confidence 999999999876553 22 222 6788889999876555332 23467999
Q ss_pred EeCchHHHHHHhcCCC-cccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccc
Q 011605 177 VATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (481)
Q Consensus 177 i~T~~~l~~~l~~~~~-~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (481)
|+||+++..++..... ..++++++||+||+|.+.+..++.++...+.++.....
T Consensus 151 VtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~------------------------- 205 (876)
T PRK13767 151 ITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAG------------------------- 205 (876)
T ss_pred EecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcC-------------------------
Confidence 9999999877755321 24788999999999999877677777666665543221
Q ss_pred ccccCCCCCcceeeeeeceeeccC--chhhhcccc----cCCceee-cCCcc-ccCc--ccccccccccCCCch----HH
Q 011605 256 ERGFKDKPYPRLVKMVLSATLTQD--PNKLAQLDL----HHPLFLT-TGETR-YKLP--ERLESYKLICESKLK----PL 321 (481)
Q Consensus 256 ~~~~~~~~~~~~~~v~~sat~~~~--~~~~~~~~~----~~~~~~~-~~~~~-~~~~--~~~~~~~~~~~~~~k----~~ 321 (481)
+..+.+++|||+.+. ...+..... ..+..+. ..... ..+. ....... ....... ..
T Consensus 206 ---------~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~-~~~~~~~~~~l~~ 275 (876)
T PRK13767 206 ---------GEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLI-HTPAEEISEALYE 275 (876)
T ss_pred ---------CCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCcccc-ccccchhHHHHHH
Confidence 244789999998652 222221110 1111111 11000 0000 0000000 0011111 12
Q ss_pred HHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccc---cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccC
Q 011605 322 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398 (481)
Q Consensus 322 ~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~G 398 (481)
.+.+.+. ..+++||||+++..|+.++..|.+... .+.++..+||+++.++|..+++.|++|+.++||||++++.|
T Consensus 276 ~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~G 353 (876)
T PRK13767 276 TLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELG 353 (876)
T ss_pred HHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhc
Confidence 2222222 357899999999999999999987422 23578999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCCCCChhHHHHHhhhcccCC-CCccEEEEee-cchHHHHHHHHHHhcCCCCCCCCCC
Q 011605 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG-QLGRCFTLLH-KDEVKRFKKLLQKADNDSCPIHSIP 465 (481)
Q Consensus 399 vdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (481)
+|+|++++||+++.|.+..+|+||+||+||.+ ..+.++++.. ..+......+.+......+.+...|
T Consensus 354 IDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~ 422 (876)
T PRK13767 354 IDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIP 422 (876)
T ss_pred CCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999999864 3344554443 3343444445555555544443344
No 42
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.8e-41 Score=323.82 Aligned_cols=338 Identities=22% Similarity=0.316 Sum_probs=266.9
Q ss_pred HHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHH
Q 011605 39 LKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 39 l~~~~~~-~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (481)
+...|++ +||..+|+.|.+++..++. ++++++.+|||+|||++|.+|++-. ..-+|||.|..+|..++
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPAll~-------~G~TLVVSPLiSLM~DQ 73 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPALLL-------EGLTLVVSPLISLMKDQ 73 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHHHhc-------CCCEEEECchHHHHHHH
Confidence 3455665 8999999999999999887 8999999999999999999998742 22699999999999999
Q ss_pred HHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcC-CCcEEEeCchHHHHHHhcCCCcccC
Q 011605 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLE 196 (481)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~T~~~l~~~l~~~~~~~~~ 196 (481)
.+.++.. |+.+..+.+..+..+....+ +.+.. ..++++-+|+.+...... ..+.-.
T Consensus 74 V~~l~~~----Gi~A~~lnS~l~~~e~~~v~------------------~~l~~g~~klLyisPErl~~~~f~-~~L~~~ 130 (590)
T COG0514 74 VDQLEAA----GIRAAYLNSTLSREERQQVL------------------NQLKSGQLKLLYISPERLMSPRFL-ELLKRL 130 (590)
T ss_pred HHHHHHc----CceeehhhcccCHHHHHHHH------------------HHHhcCceeEEEECchhhcChHHH-HHHHhC
Confidence 9999887 88888988887766553322 23333 479999999998553221 112244
Q ss_pred CccEEEEechhHhhHHH--HhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeece
Q 011605 197 HLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 197 ~~~~iVvDE~H~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 274 (481)
.+.+++|||||++..|| |+..+..+...... ++.++++.+||
T Consensus 131 ~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~------------------------------------~~~~p~~AlTA 174 (590)
T COG0514 131 PISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG------------------------------------LPNPPVLALTA 174 (590)
T ss_pred CCceEEechHHHHhhcCCccCHhHHHHHHHHhh------------------------------------CCCCCEEEEeC
Confidence 68899999999999996 88888777766533 24568999999
Q ss_pred eeccCchhhhc--ccccCCceeecCCccccCcccccccccccCC--CchHHHHHHHHHhcCCCeEEEEecchhhHHHHHH
Q 011605 275 TLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICES--KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350 (481)
Q Consensus 275 t~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~ 350 (481)
|.++.....+. +.+..+..+..+..++++.- .+.... ..+...+.+ +.....+..||||.|++.++.+++
T Consensus 175 TA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~-----~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~ 248 (590)
T COG0514 175 TATPRVRDDIREQLGLQDANIFRGSFDRPNLAL-----KVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAE 248 (590)
T ss_pred CCChHHHHHHHHHhcCCCcceEEecCCCchhhh-----hhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHH
Confidence 99887766444 44455555555555444322 222221 222222222 114456679999999999999999
Q ss_pred HHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCC
Q 011605 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (481)
Q Consensus 351 ~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~ 430 (481)
.|...| ..+..||++|+..+|..+.++|..++.+|+|||.++++|||-|++++|||+++|.|..+|.|-+|||||+|
T Consensus 249 ~L~~~g---~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG 325 (590)
T COG0514 249 WLRKNG---ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDG 325 (590)
T ss_pred HHHHCC---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCC
Confidence 999876 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeecchHHHHHHHHHHhc
Q 011605 431 QLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 431 ~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
....|++++++.|......+++.-+
T Consensus 326 ~~a~aill~~~~D~~~~~~~i~~~~ 350 (590)
T COG0514 326 LPAEAILLYSPEDIRWQRYLIEQSK 350 (590)
T ss_pred CcceEEEeeccccHHHHHHHHHhhc
Confidence 9999999999999888777776653
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1e-40 Score=333.15 Aligned_cols=369 Identities=20% Similarity=0.287 Sum_probs=281.7
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc----cCCccEEEEcc
Q 011605 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLP 109 (481)
Q Consensus 34 ~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~----~~~~~~lil~P 109 (481)
-|+|.+.+.+.+- |.+|++.|.+|++.+.. |+|+++.||||+|||.++.+|++..+.... ..+..+|||+|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsP 81 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISP 81 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCc
Confidence 4899999999987 99999999999999886 999999999999999999999999998872 34578999999
Q ss_pred cHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhc
Q 011605 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (481)
Q Consensus 110 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~ 189 (481)
.++|..++.+.+..++...|+.+...+|+++...+..+ ..+.|+|+|+||++|.-++..
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~---------------------~~~PPdILiTTPEsL~lll~~ 140 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKM---------------------LKNPPHILITTPESLAILLNS 140 (814)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhc---------------------cCCCCcEEEeChhHHHHHhcC
Confidence 99999999999999999999999999999987776544 345679999999999888766
Q ss_pred CC-CcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCccee
Q 011605 190 TR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (481)
Q Consensus 190 ~~-~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (481)
.. ...++++.++||||.|.+...-.+.++...+.++.... ++++
T Consensus 141 ~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~-----------------------------------~~~q 185 (814)
T COG1201 141 PKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELA-----------------------------------GDFQ 185 (814)
T ss_pred HHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhC-----------------------------------cccE
Confidence 32 12588999999999999988777777777777765433 2458
Q ss_pred eeeeceeeccCchhhhcccccC-C-ceeecCCccccCccccc---ccccc-cCCCchHHHHHHHHHhcCCCeEEEEecch
Q 011605 269 KMVLSATLTQDPNKLAQLDLHH-P-LFLTTGETRYKLPERLE---SYKLI-CESKLKPLYLVALLQSLGEEKCIVFTSSV 342 (481)
Q Consensus 269 ~v~~sat~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~---~~~~~-~~~~~k~~~l~~~l~~~~~~~~lVf~~s~ 342 (481)
.+.+|||..+.......+...+ + .++.........-.... ..... .........+.++++++ ..+|||+|++
T Consensus 186 RIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR 263 (814)
T COG1201 186 RIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLIFTNTR 263 (814)
T ss_pred EEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEEEEeCh
Confidence 9999999985433333333222 2 22222221111000000 00000 00111234455555554 3899999999
Q ss_pred hhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHH
Q 011605 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 422 (481)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~ 422 (481)
..++.++..|++.+. ..+..+||+++.+.|..+.++|++|+.+.+|||++++-|+|+.+++.||+++.|.+...++||
T Consensus 264 ~~aE~l~~~L~~~~~--~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQR 341 (814)
T COG1201 264 SGAERLAFRLKKLGP--DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQR 341 (814)
T ss_pred HHHHHHHHHHHHhcC--CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHh
Confidence 999999999998764 688999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccc-CCCCccEEEEeec-chHHHHHHHHHHhcCCCCCCCCCCch
Q 011605 423 AGRTAR-AGQLGRCFTLLHK-DEVKRFKKLLQKADNDSCPIHSIPSS 467 (481)
Q Consensus 423 ~GR~~R-~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (481)
+||+|+ .+...+.+++... .|.-.-.-+.+.+....+...++|..
T Consensus 342 iGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~ 388 (814)
T COG1201 342 IGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKN 388 (814)
T ss_pred ccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCc
Confidence 999986 4455667766555 33334444455555555554555443
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.4e-40 Score=341.50 Aligned_cols=334 Identities=21% Similarity=0.265 Sum_probs=244.4
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
+++.+.+.+++.||..|+++|.++++..+. .++|+++++|||+|||+++.++++..+... +.++||++|+++|+
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~---~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~aLa 81 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGVL---EGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLKALA 81 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHh---CCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHH
Confidence 999999999999999999999999986332 489999999999999999999998877653 35899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcc
Q 011605 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~ 194 (481)
.|+++.+..+. ..++++..++|+...... ....++|+|+||+++..++.. ...+
T Consensus 82 ~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~------------------------~~~~~~IiV~Tpe~~~~ll~~-~~~~ 135 (720)
T PRK00254 82 EEKYREFKDWE-KLGLRVAMTTGDYDSTDE------------------------WLGKYDIIIATAEKFDSLLRH-GSSW 135 (720)
T ss_pred HHHHHHHHHHh-hcCCEEEEEeCCCCCchh------------------------hhccCCEEEEcHHHHHHHHhC-Cchh
Confidence 99999998764 358899999998754322 113569999999999888765 3346
Q ss_pred cCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeece
Q 011605 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 274 (481)
++++++||+||+|.+.+.+++..++.++..+. ...+++++||
T Consensus 136 l~~l~lvViDE~H~l~~~~rg~~le~il~~l~--------------------------------------~~~qiI~lSA 177 (720)
T PRK00254 136 IKDVKLVVADEIHLIGSYDRGATLEMILTHML--------------------------------------GRAQILGLSA 177 (720)
T ss_pred hhcCCEEEEcCcCccCCccchHHHHHHHHhcC--------------------------------------cCCcEEEEEc
Confidence 78999999999999988888888888877653 2347999999
Q ss_pred eeccCchhhhcccccCCceeecCCccccCccc--ccccccccCC-C-----chHHHHHHHHHhcCCCeEEEEecchhhHH
Q 011605 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPER--LESYKLICES-K-----LKPLYLVALLQSLGEEKCIVFTSSVESTH 346 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~-----~k~~~l~~~l~~~~~~~~lVf~~s~~~~~ 346 (481)
|+.+.. .... ++..... ............ ...+...... . .....+.+.+. .++++||||++++.|+
T Consensus 178 Tl~n~~-~la~-wl~~~~~-~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~ 252 (720)
T PRK00254 178 TVGNAE-ELAE-WLNAELV-VSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAE 252 (720)
T ss_pred cCCCHH-HHHH-HhCCccc-cCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHH
Confidence 986432 2221 1111111 111111111000 0000000000 0 01122333333 3679999999999998
Q ss_pred HHHHHHhhcc------------------------------ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccc
Q 011605 347 RLCTLLNHFG------------------------------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (481)
Q Consensus 347 ~l~~~L~~~~------------------------------~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~ 396 (481)
.++..|.... ....+++++|++++.++|..+++.|++|.++|||||++++
T Consensus 253 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa 332 (720)
T PRK00254 253 KEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLS 332 (720)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHh
Confidence 8876664210 0123689999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEE-------cCCC-CChhHHHHHhhhcccCCC--CccEEEEeecch
Q 011605 397 RGMDVEGVNNVVN-------YDKP-AYIKTYIHRAGRTARAGQ--LGRCFTLLHKDE 443 (481)
Q Consensus 397 ~Gvdl~~~~~Vi~-------~~~~-~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~ 443 (481)
.|+|+|+.++||. ++.+ .+..+|.||+|||||.|. .|.+++++...+
T Consensus 333 ~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 333 AGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred hhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999998884 3322 246789999999999764 499999987654
No 45
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-40 Score=297.61 Aligned_cols=355 Identities=30% Similarity=0.431 Sum_probs=316.0
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
+|+..+.+++.+-||..|+|.|++.++.+++ ++++.-.+-||+|||.++++||++.+......+.+++++.||++|
T Consensus 27 gL~~~v~raI~kkg~~~ptpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreL 102 (529)
T KOG0337|consen 27 GLDYKVLRAIHKKGFNTPTPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTREL 102 (529)
T ss_pred CCCHHHHHHHHHhhcCCCCchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHH
Confidence 5999999999999999999999888777765 999999999999999999999999998877778899999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCc
Q 011605 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
+.|..+-.+.++...++...+++|+.++.++...+ ..++||+++||..+..+.-... +
T Consensus 103 a~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l---------------------~~npDii~ATpgr~~h~~vem~-l 160 (529)
T KOG0337|consen 103 ALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILL---------------------NENPDIIIATPGRLLHLGVEMT-L 160 (529)
T ss_pred HHHHHHHHHHhccccchhhhhhcccchHHHHHHHh---------------------ccCCCEEEecCceeeeeehhee-c
Confidence 99999999999999999999999998887775543 3577999999999988765533 6
Q ss_pred ccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeec
Q 011605 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 273 (481)
.++.+.+|||||++.+...+|.+.+..++.++.... +.+++|
T Consensus 161 ~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~--------------------------------------QTllfS 202 (529)
T KOG0337|consen 161 TLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESR--------------------------------------QTLLFS 202 (529)
T ss_pred cccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcc--------------------------------------eEEEEe
Confidence 789999999999999999999999999998875422 799999
Q ss_pred eeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcC-CCeEEEEecchhhHHHHHHHH
Q 011605 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG-EEKCIVFTSSVESTHRLCTLL 352 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~lVf~~s~~~~~~l~~~L 352 (481)
||++..+......++.+|..+....+ ..+.+..+..+.......|...|..++.... +.+++||+.+..+++.+...|
T Consensus 203 atlp~~lv~fakaGl~~p~lVRldve-tkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll 281 (529)
T KOG0337|consen 203 ATLPRDLVDFAKAGLVPPVLVRLDVE-TKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLL 281 (529)
T ss_pred ccCchhhHHHHHccCCCCceEEeehh-hhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHH
Confidence 99999999999999999988774433 3445666667777788889899988887763 457999999999999999999
Q ss_pred hhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCC
Q 011605 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~ 432 (481)
...+ ..+..+.|.++..-|..-+..|+.++..+||.|+...+|+|+|.++.||+|+.|.+...|.+|+||+.|.|+.
T Consensus 282 ~~~g---~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt 358 (529)
T KOG0337|consen 282 RDFG---GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT 358 (529)
T ss_pred HhcC---CCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcccc
Confidence 9887 7888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeecchHHHHHHHHHHhcC
Q 011605 433 GRCFTLLHKDEVKRFKKLLQKADN 456 (481)
Q Consensus 433 g~~~~~~~~~~~~~~~~~~~~~~~ 456 (481)
|.+|.++..++...+-++-..+.+
T Consensus 359 g~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 359 GRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred ceEEEEEecccchhhhhhhhhcCC
Confidence 999999999999988888777765
No 46
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.3e-39 Score=332.89 Aligned_cols=343 Identities=20% Similarity=0.235 Sum_probs=244.0
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
|++.+.+.+...+|. ++++|.++++.+.. ++++++++|||+|||+++.++++..+..+ .+++|++|+++|+
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~----~~nvlv~apTGSGKTl~a~lail~~l~~~----~k~v~i~P~raLa 78 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQLRK----GENVIVSVPTAAGKTLIAYSAIYETFLAG----LKSIYIVPLRSLA 78 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHHhc----CCcEEEECCCCchHHHHHHHHHHHHHHhC----CcEEEEechHHHH
Confidence 999999999999985 99999999998654 88999999999999999999888877653 4799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcc
Q 011605 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~ 194 (481)
.|+++++.++. ..|..+...+|+....... ...++|+|+||+++..++..+. ..
T Consensus 79 ~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~------------------------~~~~dIiv~Tpek~~~l~~~~~-~~ 132 (674)
T PRK01172 79 MEKYEELSRLR-SLGMRVKISIGDYDDPPDF------------------------IKRYDVVILTSEKADSLIHHDP-YI 132 (674)
T ss_pred HHHHHHHHHHh-hcCCeEEEEeCCCCCChhh------------------------hccCCEEEECHHHHHHHHhCCh-hH
Confidence 99999998764 3578888888876532221 1345999999999988877643 45
Q ss_pred cCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeece
Q 011605 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 274 (481)
+.+++++|+||+|.+.+.+++..++.++.+..... +..+++++||
T Consensus 133 l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~-----------------------------------~~~riI~lSA 177 (674)
T PRK01172 133 INDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN-----------------------------------PDARILALSA 177 (674)
T ss_pred HhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC-----------------------------------cCCcEEEEeC
Confidence 78899999999999987778888888776654322 2457899999
Q ss_pred eeccCchhhhcccccCCceeecCCccccCccccccc--ccccCCCchHHHHHHHHHh--cCCCeEEEEecchhhHHHHHH
Q 011605 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY--KLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCT 350 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~~ 350 (481)
|+.+.. .... ++....+ ................ ............+..++.. ..++++||||++++.++.+++
T Consensus 178 Tl~n~~-~la~-wl~~~~~-~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~ 254 (674)
T PRK01172 178 TVSNAN-ELAQ-WLNASLI-KSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAE 254 (674)
T ss_pred ccCCHH-HHHH-HhCCCcc-CCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHH
Confidence 986432 2211 1111111 1111111110000000 0000011111112222322 246799999999999999999
Q ss_pred HHhhccc----------------------cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEE
Q 011605 351 LLNHFGE----------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (481)
Q Consensus 351 ~L~~~~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi 408 (481)
.|.+... ...+++++|++++..+|..+++.|++|..+|||||+++++|+|+|+.. ||
T Consensus 255 ~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VI 333 (674)
T PRK01172 255 MLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL-VI 333 (674)
T ss_pred HHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE-EE
Confidence 8865311 013588899999999999999999999999999999999999999865 44
Q ss_pred EcC---------CCCChhHHHHHhhhcccCCCC--ccEEEEeecch-HHHHHHHH
Q 011605 409 NYD---------KPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDE-VKRFKKLL 451 (481)
Q Consensus 409 ~~~---------~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~-~~~~~~~~ 451 (481)
+.+ .+.+..+|.||+|||||.|.+ |.+++++...+ .+.+++++
T Consensus 334 I~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l 388 (674)
T PRK01172 334 VRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYL 388 (674)
T ss_pred EcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHH
Confidence 433 245788999999999999865 66777765443 34444443
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.7e-38 Score=323.34 Aligned_cols=326 Identities=17% Similarity=0.211 Sum_probs=234.1
Q ss_pred HHHHHHHHHCCCCccchhhHHhHHhhhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 37 ~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
..+......++| .|++.|.++++.+......+ .+.+++++||||||.+++++++..+.. +.+++|++||++|+
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~----g~q~lilaPT~~LA 323 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA----GYQAALMAPTEILA 323 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEeccHHHH
Confidence 334555567898 79999999999988755433 478999999999999999998887654 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhc-CCCcEEEeCchHHHHHHhcCCCc
Q 011605 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
.|+++.+++++...++++..++|+.+...+...+. .+. ..++|+|+||..+.+ ..
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~------------------~l~~g~~~IvVgT~~ll~~------~v 379 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREILE------------------AIASGEADIVIGTHALIQD------DV 379 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHH------------------HHhCCCCCEEEchHHHhcc------cc
Confidence 99999999999888999999999988655533322 222 358999999976632 24
Q ss_pred ccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeec
Q 011605 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 273 (481)
.+.+++++|+||+|++...... .+.... ...+++++|
T Consensus 380 ~~~~l~lvVIDE~Hrfg~~qr~----~l~~~~---------------------------------------~~~~iL~~S 416 (681)
T PRK10917 380 EFHNLGLVIIDEQHRFGVEQRL----ALREKG---------------------------------------ENPHVLVMT 416 (681)
T ss_pred hhcccceEEEechhhhhHHHHH----HHHhcC---------------------------------------CCCCEEEEe
Confidence 5778999999999986432211 111110 123689999
Q ss_pred eeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHH-Hh-cCCCeEEEEecchh--------
Q 011605 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL-QS-LGEEKCIVFTSSVE-------- 343 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l-~~-~~~~~~lVf~~s~~-------- 343 (481)
||+.+...........+...+...... ...+... ..... +...+.+.+ +. ..+++++|||+.++
T Consensus 417 ATp~prtl~~~~~g~~~~s~i~~~p~~---r~~i~~~--~~~~~-~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~ 490 (681)
T PRK10917 417 ATPIPRTLAMTAYGDLDVSVIDELPPG---RKPITTV--VIPDS-RRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQ 490 (681)
T ss_pred CCCCHHHHHHHHcCCCceEEEecCCCC---CCCcEEE--EeCcc-cHHHHHHHHHHHHHcCCcEEEEEcccccccchhHH
Confidence 998644332222222222121111100 0111111 11122 222222222 22 24679999999654
Q ss_pred hHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCC-ChhHHHHH
Q 011605 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHR 422 (481)
Q Consensus 344 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~-s~~~~~Q~ 422 (481)
.+..+++.|.+... +..+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.+. +...+.|+
T Consensus 491 ~~~~~~~~L~~~~~-~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~ 569 (681)
T PRK10917 491 SAEETYEELQEAFP-ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQL 569 (681)
T ss_pred HHHHHHHHHHHHCC-CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHH
Confidence 45566777766421 26899999999999999999999999999999999999999999999999999986 47889999
Q ss_pred hhhcccCCCCccEEEEeec
Q 011605 423 AGRTARAGQLGRCFTLLHK 441 (481)
Q Consensus 423 ~GR~~R~~~~g~~~~~~~~ 441 (481)
+||+||.|..|.|++++..
T Consensus 570 ~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 570 RGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred hhcccCCCCceEEEEEECC
Confidence 9999999999999999953
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.8e-38 Score=326.90 Aligned_cols=327 Identities=19% Similarity=0.215 Sum_probs=238.8
Q ss_pred HHHHHHH-HHCCCCccchhhHHhHHhhhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 37 PRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 37 ~~l~~~~-~~~~~~~~~~~Q~~~~~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
..+.+.+ ..++| .|++.|.++++.++..+..+ .+.+++++||+|||.+++.+++..+..+ .+++|++||++|
T Consensus 438 ~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g----~qvlvLvPT~~L 512 (926)
T TIGR00580 438 LEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG----KQVAVLVPTTLL 512 (926)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC----CeEEEEeCcHHH
Confidence 3444444 45799 69999999999998765443 5799999999999999999988877654 489999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhc-CCCcEEEeCchHHHHHHhcCCC
Q 011605 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRG 192 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~T~~~l~~~l~~~~~ 192 (481)
+.|.++.+++++...++++..++|.....+....+ ..+. ..++|+|+||..+ . ..
T Consensus 513 A~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~------------------~~l~~g~~dIVIGTp~ll----~--~~ 568 (926)
T TIGR00580 513 AQQHFETFKERFANFPVTIELLSRFRSAKEQNEIL------------------KELASGKIDILIGTHKLL----Q--KD 568 (926)
T ss_pred HHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHH------------------HHHHcCCceEEEchHHHh----h--CC
Confidence 99999999999888889999998877654432221 1222 3579999999533 2 23
Q ss_pred cccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeee
Q 011605 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (481)
Q Consensus 193 ~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (481)
..+.+++++|+||+|++... ....+.... ...+++++
T Consensus 569 v~f~~L~llVIDEahrfgv~-----~~~~L~~~~--------------------------------------~~~~vL~~ 605 (926)
T TIGR00580 569 VKFKDLGLLIIDEEQRFGVK-----QKEKLKELR--------------------------------------TSVDVLTL 605 (926)
T ss_pred CCcccCCEEEeecccccchh-----HHHHHHhcC--------------------------------------CCCCEEEE
Confidence 56889999999999986322 111111111 23478999
Q ss_pred ceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHh-cCCCeEEEEecchhhHHHHHHH
Q 011605 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTL 351 (481)
Q Consensus 273 sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~lVf~~s~~~~~~l~~~ 351 (481)
|||+.+...........++..+....... ..+..+.. .... ......+... ..+++++|||++++.++.+++.
T Consensus 606 SATpiprtl~~~l~g~~d~s~I~~~p~~R---~~V~t~v~--~~~~-~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~ 679 (926)
T TIGR00580 606 SATPIPRTLHMSMSGIRDLSIIATPPEDR---LPVRTFVM--EYDP-ELVREAIRRELLRGGQVFYVHNRIESIEKLATQ 679 (926)
T ss_pred ecCCCHHHHHHHHhcCCCcEEEecCCCCc---cceEEEEE--ecCH-HHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHH
Confidence 99986554444434444444433222110 01111111 1111 1111122222 2478999999999999999999
Q ss_pred HhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCC-ChhHHHHHhhhcccCC
Q 011605 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAG 430 (481)
Q Consensus 352 L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~-s~~~~~Q~~GR~~R~~ 430 (481)
|++.. .+..+..+||.|+..+|.+++++|++|+.+|||||+++++|+|+|++++||+++.+. +..+|.|++||+||.|
T Consensus 680 L~~~~-p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g 758 (926)
T TIGR00580 680 LRELV-PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSK 758 (926)
T ss_pred HHHhC-CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCC
Confidence 98752 136899999999999999999999999999999999999999999999999998864 5778999999999999
Q ss_pred CCccEEEEeecc
Q 011605 431 QLGRCFTLLHKD 442 (481)
Q Consensus 431 ~~g~~~~~~~~~ 442 (481)
+.|.|++++...
T Consensus 759 ~~g~aill~~~~ 770 (926)
T TIGR00580 759 KKAYAYLLYPHQ 770 (926)
T ss_pred CCeEEEEEECCc
Confidence 999999998653
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.7e-38 Score=320.39 Aligned_cols=328 Identities=17% Similarity=0.226 Sum_probs=234.3
Q ss_pred HHHHHHHHHCCCCccchhhHHhHHhhhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 37 ~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
..+...++.++| +|++.|.++++.++..+... .+.+++++||+|||.+++++++..+.. +.+++|++||++|+
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~----g~qvlilaPT~~LA 297 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA----GYQVALMAPTEILA 297 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc----CCcEEEECCHHHHH
Confidence 345567778999 89999999999998755332 368999999999999999988887655 34899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhh-cCCCcEEEeCchHHHHHHhcCCCc
Q 011605 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
.|+++.+++++..+++++..++|+.........+. .+ ...++|+|+||..+.+ ..
T Consensus 298 ~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~------------------~i~~g~~~IiVgT~~ll~~------~~ 353 (630)
T TIGR00643 298 EQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLE------------------TIASGQIHLVVGTHALIQE------KV 353 (630)
T ss_pred HHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHH------------------HHhCCCCCEEEecHHHHhc------cc
Confidence 99999999999888999999999987655433221 22 2357999999987643 24
Q ss_pred ccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeec
Q 011605 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 273 (481)
.+.+++++|+||+|.+..... ..+....... ...+++++|
T Consensus 354 ~~~~l~lvVIDEaH~fg~~qr----~~l~~~~~~~------------------------------------~~~~~l~~S 393 (630)
T TIGR00643 354 EFKRLALVIIDEQHRFGVEQR----KKLREKGQGG------------------------------------FTPHVLVMS 393 (630)
T ss_pred cccccceEEEechhhccHHHH----HHHHHhcccC------------------------------------CCCCEEEEe
Confidence 577899999999998643221 1111111000 123689999
Q ss_pred eeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHH-hc-CCCeEEEEecch--------h
Q 011605 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SL-GEEKCIVFTSSV--------E 343 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~-~~~~~lVf~~s~--------~ 343 (481)
||+.+...........+...+...... ...+.. .......+ ..+...+. .. .+++++|||+.+ .
T Consensus 394 ATp~prtl~l~~~~~l~~~~i~~~p~~---r~~i~~--~~~~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~ 467 (630)
T TIGR00643 394 ATPIPRTLALTVYGDLDTSIIDELPPG---RKPITT--VLIKHDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLK 467 (630)
T ss_pred CCCCcHHHHHHhcCCcceeeeccCCCC---CCceEE--EEeCcchH-HHHHHHHHHHHHhCCcEEEEEccccccccchHH
Confidence 998654322221111111111100000 001111 11112222 23333332 22 467899999876 4
Q ss_pred hHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCC-ChhHHHHH
Q 011605 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHR 422 (481)
Q Consensus 344 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~-s~~~~~Q~ 422 (481)
.++.+++.|.+.. .+..+..+||+|+..+|.+++++|++|+.+|||||+++++|+|+|++++||+++.+. +...+.|+
T Consensus 468 ~a~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~ 546 (630)
T TIGR00643 468 AAEALYERLKKAF-PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQL 546 (630)
T ss_pred HHHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHH
Confidence 4566777776542 347899999999999999999999999999999999999999999999999999886 57889999
Q ss_pred hhhcccCCCCccEEEEee
Q 011605 423 AGRTARAGQLGRCFTLLH 440 (481)
Q Consensus 423 ~GR~~R~~~~g~~~~~~~ 440 (481)
+||+||.|+.|.|++++.
T Consensus 547 ~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 547 RGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred hhhcccCCCCcEEEEEEC
Confidence 999999999999999994
No 50
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.4e-37 Score=328.28 Aligned_cols=307 Identities=21% Similarity=0.282 Sum_probs=217.4
Q ss_pred EECCCCchhHHHhHHHHHHHHHHhc---------cCCccEEEEcccHHHHHHHHHHHHHhcc------------ccCceE
Q 011605 74 INSPTGSGKTLSYALPIVQTLSNRA---------VRCLRALVVLPTRDLALQVKDVFAAIAP------------AVGLSV 132 (481)
Q Consensus 74 ~~~~tG~GKT~~~~~~~~~~l~~~~---------~~~~~~lil~Pt~~L~~q~~~~~~~~~~------------~~~~~~ 132 (481)
|++|||||||+++.++++..+.... ..+.++|||+|+++|+.|+.+.++..+. ..++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999887532 2357899999999999999998875221 237889
Q ss_pred EEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHH
Q 011605 133 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212 (481)
Q Consensus 133 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~ 212 (481)
...+|+.+..++... +...++|+|+||+++..++.+.....++++++|||||+|.+...
T Consensus 81 ~vrtGDt~~~eR~rl---------------------l~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~ 139 (1490)
T PRK09751 81 GIRTGDTPAQERSKL---------------------TRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGS 139 (1490)
T ss_pred EEEECCCCHHHHHHH---------------------hcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhccc
Confidence 999999987665432 23467999999999998876533346899999999999999876
Q ss_pred HHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhc-ccccCC
Q 011605 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LDLHHP 291 (481)
Q Consensus 213 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~-~~~~~~ 291 (481)
.++.++...+.++..... ...|.|++|||..+. ..... +....+
T Consensus 140 kRG~~Lel~LeRL~~l~~----------------------------------~~~QrIgLSATI~n~-eevA~~L~g~~p 184 (1490)
T PRK09751 140 KRGAHLALSLERLDALLH----------------------------------TSAQRIGLSATVRSA-SDVAAFLGGDRP 184 (1490)
T ss_pred ccccHHHHHHHHHHHhCC----------------------------------CCCeEEEEEeeCCCH-HHHHHHhcCCCC
Confidence 667777666666543211 245899999999763 22222 222223
Q ss_pred ceeecCCccccCcccccccccccC-------------------CCc-hHHHHHHHHHhc-CCCeEEEEecchhhHHHHHH
Q 011605 292 LFLTTGETRYKLPERLESYKLICE-------------------SKL-KPLYLVALLQSL-GEEKCIVFTSSVESTHRLCT 350 (481)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~-k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~ 350 (481)
..+.......... ++.+..... ... .......++... ...++||||||+..|+.++.
T Consensus 185 v~Iv~~~~~r~~~--l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~ 262 (1490)
T PRK09751 185 VTVVNPPAMRHPQ--IRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTA 262 (1490)
T ss_pred EEEECCCCCcccc--eEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHH
Confidence 3221111110000 000000000 000 001111223222 35789999999999999999
Q ss_pred HHhhcccc------------------------------ceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCC
Q 011605 351 LLNHFGEL------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400 (481)
Q Consensus 351 ~L~~~~~~------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvd 400 (481)
.|++.... ...+..+||+++.++|..+++.|++|++++||||++++.|||
T Consensus 263 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGID 342 (1490)
T PRK09751 263 RLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGID 342 (1490)
T ss_pred HHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCC
Confidence 99764210 123568999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCCCCChhHHHHHhhhcccCC-CCccEEEE
Q 011605 401 VEGVNNVVNYDKPAYIKTYIHRAGRTARAG-QLGRCFTL 438 (481)
Q Consensus 401 l~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~-~~g~~~~~ 438 (481)
++++++||+++.|.+..+|+||+||+||.. ..+.++++
T Consensus 343 Ig~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 343 MGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred cccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEE
Confidence 999999999999999999999999999963 22445533
No 51
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.4e-37 Score=281.03 Aligned_cols=324 Identities=20% Similarity=0.272 Sum_probs=234.3
Q ss_pred CCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011605 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 127 (481)
..++|.||...+..++ .+|.++++|||.|||+++++.+...+...+ + ++|+++||+.|+.|.++.+.++..-
T Consensus 13 ~ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWFG--G-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhcC--C-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 4588999988888876 459999999999999999998888777753 3 8999999999999999999999765
Q ss_pred cCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechh
Q 011605 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 128 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H 207 (481)
..-.++.++|..+.......+ ...+|+|+||+.+.+-+..+ .+++.+++++||||||
T Consensus 85 p~~~i~~ltGev~p~~R~~~w----------------------~~~kVfvaTPQvveNDl~~G-rid~~dv~~lifDEAH 141 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELW----------------------AKKKVFVATPQVVENDLKAG-RIDLDDVSLLIFDEAH 141 (542)
T ss_pred ChhheeeecCCCChHHHHHHH----------------------hhCCEEEeccHHHHhHHhcC-ccChHHceEEEechhh
Confidence 556788999999887765443 34489999999998888774 4789999999999999
Q ss_pred HhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhc--
Q 011605 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-- 285 (481)
Q Consensus 208 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~-- 285 (481)
+.......-.+....-... ..+.++.+||||..+......
T Consensus 142 RAvGnyAYv~Va~~y~~~~--------------------------------------k~~~ilgLTASPGs~~ekI~eV~ 183 (542)
T COG1111 142 RAVGNYAYVFVAKEYLRSA--------------------------------------KNPLILGLTASPGSDLEKIQEVV 183 (542)
T ss_pred hccCcchHHHHHHHHHHhc--------------------------------------cCceEEEEecCCCCCHHHHHHHH
Confidence 8644332222222222211 223577888888755222111
Q ss_pred --ccccC---------------------------------------------------CceeecCCc--c----------
Q 011605 286 --LDLHH---------------------------------------------------PLFLTTGET--R---------- 300 (481)
Q Consensus 286 --~~~~~---------------------------------------------------~~~~~~~~~--~---------- 300 (481)
+++.. .-+...... .
T Consensus 184 ~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~ 263 (542)
T COG1111 184 ENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIR 263 (542)
T ss_pred HhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHH
Confidence 00000 000000000 0
Q ss_pred c--cCccccccc-----------------------------------------------------------------ccc
Q 011605 301 Y--KLPERLESY-----------------------------------------------------------------KLI 313 (481)
Q Consensus 301 ~--~~~~~~~~~-----------------------------------------------------------------~~~ 313 (481)
. ........+ ...
T Consensus 264 ~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~ 343 (542)
T COG1111 264 LIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADES 343 (542)
T ss_pred HHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccc
Confidence 0 000000000 001
Q ss_pred cCCCchHHHHHHHHHh----cCCCeEEEEecchhhHHHHHHHHhhccccceeEEEc-------ccccChHHHHHHHHHHh
Q 011605 314 CESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY-------SGLQRQSVRSKTLKAFR 382 (481)
Q Consensus 314 ~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~-------~~~~~~~~r~~~~~~f~ 382 (481)
.....|...+.+++.. ..+.++|||++.+..++.+.+.|.+.+.... +.++ ..||+..+..++++.|+
T Consensus 344 ~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr 422 (542)
T COG1111 344 GVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR-VRFIGQASREGDKGMSQKEQKEIIDQFR 422 (542)
T ss_pred cCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce-eEEeeccccccccccCHHHHHHHHHHHh
Confidence 1122344455554433 3567999999999999999999999875432 2332 35899999999999999
Q ss_pred cCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecc
Q 011605 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (481)
Q Consensus 383 ~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 442 (481)
+|+.++||||++.++|+|+|.++.||+|++..|...++||.||.||. +.|.+++++..+
T Consensus 423 ~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 423 KGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred cCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 99999999999999999999999999999999999999999999997 789999999887
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.1e-36 Score=321.92 Aligned_cols=326 Identities=17% Similarity=0.190 Sum_probs=238.3
Q ss_pred HHHHHHHHHCCCCccchhhHHhHHhhhCCCCC--CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 37 ~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~--~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
....+....++| .|++.|.++++.++..+.. ..+.+++++||+|||.+++.++...+.. +.+++|++||++|+
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~----g~qvlvLvPT~eLA 662 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN----HKQVAVLVPTTLLA 662 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHH
Confidence 445566677899 8999999999998875433 2689999999999999988777655443 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhc-CCCcEEEeCchHHHHHHhcCCCc
Q 011605 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
.|++..+++.+...++++..++|..+.......+ ..+. ..++|+|+||+.+. ...
T Consensus 663 ~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il------------------~~l~~g~~dIVVgTp~lL~------~~v 718 (1147)
T PRK10689 663 QQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQIL------------------AEAAEGKIDILIGTHKLLQ------SDV 718 (1147)
T ss_pred HHHHHHHHHhhccCCceEEEEECCCCHHHHHHHH------------------HHHHhCCCCEEEECHHHHh------CCC
Confidence 9999999988776678888888877655443222 1222 35799999997442 224
Q ss_pred ccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeec
Q 011605 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 273 (481)
.+.+++++|+||+|++... +.+.+ ..+. +..+++++|
T Consensus 719 ~~~~L~lLVIDEahrfG~~----~~e~l-k~l~--------------------------------------~~~qvLl~S 755 (1147)
T PRK10689 719 KWKDLGLLIVDEEHRFGVR----HKERI-KAMR--------------------------------------ADVDILTLT 755 (1147)
T ss_pred CHhhCCEEEEechhhcchh----HHHHH-HhcC--------------------------------------CCCcEEEEc
Confidence 5778999999999987321 11111 1111 344799999
Q ss_pred eeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHh-cCCCeEEEEecchhhHHHHHHHH
Q 011605 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-LGEEKCIVFTSSVESTHRLCTLL 352 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~lVf~~s~~~~~~l~~~L 352 (481)
||+.+........++.++..+....... ..+..+..... .......++.. ..+++++|||++++.++.+++.|
T Consensus 756 ATpiprtl~l~~~gl~d~~~I~~~p~~r---~~v~~~~~~~~---~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L 829 (1147)
T PRK10689 756 ATPIPRTLNMAMSGMRDLSIIATPPARR---LAVKTFVREYD---SLVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 (1147)
T ss_pred CCCCHHHHHHHHhhCCCcEEEecCCCCC---CCceEEEEecC---cHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHH
Confidence 9987666555555566665554322211 11111111111 11111222222 24679999999999999999999
Q ss_pred hhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCC-CChhHHHHHhhhcccCCC
Q 011605 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAGQ 431 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~-~s~~~~~Q~~GR~~R~~~ 431 (481)
++... +..+..+||+|+..+|.+++++|++|+.+|||||+++++|+|+|++++||+.+.. .+..+|.|++||+||.|+
T Consensus 830 ~~~~p-~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~ 908 (1147)
T PRK10689 830 AELVP-EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908 (1147)
T ss_pred HHhCC-CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCC
Confidence 87621 2578889999999999999999999999999999999999999999999966543 357789999999999999
Q ss_pred CccEEEEeec
Q 011605 432 LGRCFTLLHK 441 (481)
Q Consensus 432 ~g~~~~~~~~ 441 (481)
.|.|++++..
T Consensus 909 ~g~a~ll~~~ 918 (1147)
T PRK10689 909 QAYAWLLTPH 918 (1147)
T ss_pred ceEEEEEeCC
Confidence 9999999864
No 53
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.3e-37 Score=313.71 Aligned_cols=338 Identities=24% Similarity=0.278 Sum_probs=252.5
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
+++.+...++..++.++++.|++++...+. .++|+++++|||+|||++++++++..+.++ +.+++|++|+++|+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~---~~k~vYivPlkALa 89 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG---GGKVVYIVPLKALA 89 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc---CCcEEEEeChHHHH
Confidence 788889999999999999999999877665 379999999999999999999999988875 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcc
Q 011605 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~ 194 (481)
.+.+++++ .+..+|+++...+|+....+.. ..+++|+|+||+++-.++++... +
T Consensus 90 ~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~------------------------l~~~~ViVtT~EK~Dsl~R~~~~-~ 143 (766)
T COG1204 90 EEKYEEFS-RLEELGIRVGISTGDYDLDDER------------------------LARYDVIVTTPEKLDSLTRKRPS-W 143 (766)
T ss_pred HHHHHHhh-hHHhcCCEEEEecCCcccchhh------------------------hccCCEEEEchHHhhHhhhcCcc-h
Confidence 99999999 4455699999999999865532 14569999999999988887553 7
Q ss_pred cCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeece
Q 011605 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 274 (481)
+..+++||+||+|.+.+...+..++.+..+.+..+ +.++++.+||
T Consensus 144 ~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~-----------------------------------~~~rivgLSA 188 (766)
T COG1204 144 IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN-----------------------------------ELIRIVGLSA 188 (766)
T ss_pred hhcccEEEEeeeeecCCcccCceehhHHHHHHhhC-----------------------------------cceEEEEEee
Confidence 88999999999998877778888998888876544 2358999999
Q ss_pred eeccCchhhhcccccCCc-eeecCCccccCcccccccccccC----CCchHHHHHHHH-Hhc-CCCeEEEEecchhhHHH
Q 011605 275 TLTQDPNKLAQLDLHHPL-FLTTGETRYKLPERLESYKLICE----SKLKPLYLVALL-QSL-GEEKCIVFTSSVESTHR 347 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~k~~~l~~~l-~~~-~~~~~lVf~~s~~~~~~ 347 (481)
|+++......+....... .+.+.......+.....+..... .........+.+ ... .++++||||+|++.+..
T Consensus 189 TlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~ 268 (766)
T COG1204 189 TLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEK 268 (766)
T ss_pred ecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHH
Confidence 998654443333322111 11111111111111111111111 111223333333 222 47799999999999999
Q ss_pred HHHHHhhc----cc------------------------------cceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc
Q 011605 348 LCTLLNHF----GE------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (481)
Q Consensus 348 l~~~L~~~----~~------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~ 393 (481)
.|+.+... .. ...+++++|++++.++|..+.+.|++|+++|||||+
T Consensus 269 ~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~Tp 348 (766)
T COG1204 269 TAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTP 348 (766)
T ss_pred HHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEech
Confidence 99998730 00 123688999999999999999999999999999999
Q ss_pred ccccCCCCCCCcEEEE----cC-----CCCChhHHHHHhhhcccCCCC--ccEEEEe
Q 011605 394 AMTRGMDVEGVNNVVN----YD-----KPAYIKTYIHRAGRTARAGQL--GRCFTLL 439 (481)
Q Consensus 394 ~l~~Gvdl~~~~~Vi~----~~-----~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~ 439 (481)
++..|+|+|.-.+||- |+ .+.+..+++||+|||||.|-+ |.++++.
T Consensus 349 TLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 349 TLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred HHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 9999999997554442 44 334577999999999999876 6666666
No 54
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=286.21 Aligned_cols=358 Identities=24% Similarity=0.263 Sum_probs=276.5
Q ss_pred ccccCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHH
Q 011605 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ 92 (481)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~ 92 (481)
-|--.-...+..+..+++.++ +|+++.+.++..|+..+.|.|.-++.. .+++|.|.++..+|+||||++.-++-+.
T Consensus 180 ryD~v~a~~~~~~r~~vdeLd-ipe~fk~~lk~~G~~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~ 255 (830)
T COG1202 180 RYDEVTAETDEVERVPVDELD-IPEKFKRMLKREGIEELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIP 255 (830)
T ss_pred cceeeeccccccccccccccC-CcHHHHHHHHhcCcceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcH
Confidence 355444555666667788886 999999999999999999999888655 4467999999999999999998887777
Q ss_pred HHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCC
Q 011605 93 TLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172 (481)
Q Consensus 93 ~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (481)
.+..+ +.+.|+++|..+|++|.++++++-...+|+.+..-.|...+........ -.....
T Consensus 256 ~~l~~---g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~-----------------~~t~~d 315 (830)
T COG1202 256 RLLSG---GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVV-----------------VDTSPD 315 (830)
T ss_pred HHHhC---CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccc-----------------cCCCCC
Confidence 66663 4489999999999999999999888888999988888876554422111 112245
Q ss_pred CcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhc
Q 011605 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 252 (481)
Q Consensus 173 ~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (481)
+||+|+||+-+-.++..+ ..+.++..||+||+|.+-+...+..+..+..+++...
T Consensus 316 ADIIVGTYEGiD~lLRtg--~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~----------------------- 370 (830)
T COG1202 316 ADIIVGTYEGIDYLLRTG--KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF----------------------- 370 (830)
T ss_pred CcEEEeechhHHHHHHcC--CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC-----------------------
Confidence 799999999998888875 5588999999999999888788888888888876543
Q ss_pred cccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCccccc-ccccccCCCchHHHHHHHHHhc-
Q 011605 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE-SYKLICESKLKPLYLVALLQSL- 330 (481)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~l~~~l~~~- 330 (481)
|..|.+.+|||..++.. ++.......+..... |..++ +.....+...|...+..+.+.-
T Consensus 371 ------------~~AQ~i~LSATVgNp~e-lA~~l~a~lV~y~~R------PVplErHlvf~~~e~eK~~ii~~L~k~E~ 431 (830)
T COG1202 371 ------------PGAQFIYLSATVGNPEE-LAKKLGAKLVLYDER------PVPLERHLVFARNESEKWDIIARLVKREF 431 (830)
T ss_pred ------------CCCeEEEEEeecCChHH-HHHHhCCeeEeecCC------CCChhHeeeeecCchHHHHHHHHHHHHHH
Confidence 56699999999865433 333222222222211 12222 3333344566666665555321
Q ss_pred -------CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCC
Q 011605 331 -------GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403 (481)
Q Consensus 331 -------~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~ 403 (481)
-.+++|||++|+..|..++..|...| +.+..+|++++-.+|..+..+|.++.+..+|+|.+++.|+|+|.
T Consensus 432 ~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG---~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPA 508 (830)
T COG1202 432 STESSKGYRGQTIVFTYSRRRCHELADALTGKG---LKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPA 508 (830)
T ss_pred hhhhccCcCCceEEEecchhhHHHHHHHhhcCC---cccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCch
Confidence 25789999999999999999999776 89999999999999999999999999999999999999999996
Q ss_pred CcEEEEc-----CCCCChhHHHHHhhhcccCCC--CccEEEEeecc
Q 011605 404 VNNVVNY-----DKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKD 442 (481)
Q Consensus 404 ~~~Vi~~-----~~~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~ 442 (481)
-+ ||+- .-.-|+.+|.||.|||||.+- .|++|+++.++
T Consensus 509 SQ-VIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 509 SQ-VIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HH-HHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 44 4432 233479999999999999774 39999997764
No 55
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.3e-36 Score=302.73 Aligned_cols=327 Identities=20% Similarity=0.227 Sum_probs=224.6
Q ss_pred HHHHHH-CCCCccchhhHHhHHhhhCCCCCCC-CEEEECCCCchhHHHhHHHHHHHHHHhccCCc-cEEEEcccHHHHHH
Q 011605 40 KVALQN-MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCL-RALVVLPTRDLALQ 116 (481)
Q Consensus 40 ~~~~~~-~~~~~~~~~Q~~~~~~~~~~~~~~~-~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~-~~lil~Pt~~L~~q 116 (481)
...+++ .||. |+++|.++++.++. |+ ++++.+|||||||.++..+++.. ..+ ...+ ++++++|+++|+.|
T Consensus 5 ~~ff~~~~G~~-PtpiQ~~~i~~il~----G~~~v~~~apTGSGKTaa~aafll~~-~~~-~~~~~rLv~~vPtReLa~Q 77 (844)
T TIGR02621 5 DEWYQGLHGYS-PFPWQLSLAERFVA----GQPPESCSTPTGLGKTSIIAAWLLAV-EIG-AKVPRRLVYVVNRRTVVDQ 77 (844)
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHc----CCCcceEecCCCCcccHHHHHhhccc-ccc-ccccceEEEeCchHHHHHH
Confidence 344554 6986 99999999999875 76 57788999999998654434422 222 2233 45557799999999
Q ss_pred HHHHHHHhcccc-----------------------CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCC
Q 011605 117 VKDVFAAIAPAV-----------------------GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (481)
Q Consensus 117 ~~~~~~~~~~~~-----------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (481)
..+.+.++++.+ ++++..++|+.+...+. ..+..++
T Consensus 78 i~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~---------------------~~l~~~p 136 (844)
T TIGR02621 78 VTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW---------------------MLDPHRP 136 (844)
T ss_pred HHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH---------------------HhcCCCC
Confidence 999999998754 36777888887765553 3445678
Q ss_pred cEEEeCchHHHHHH-hcCCCc----------ccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccc
Q 011605 174 DILVATPGRLMDHI-NATRGF----------TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242 (481)
Q Consensus 174 ~Ili~T~~~l~~~l-~~~~~~----------~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (481)
+|+|+|++.+.+-. .++++. .++..+++|+|||| ++.+|.+.+..|.........
T Consensus 137 ~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~------------ 202 (844)
T TIGR02621 137 AVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD------------ 202 (844)
T ss_pred cEEEECHHHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc------------
Confidence 99999987664322 111111 25778999999999 578888888888876411100
Q ss_pred cccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHH
Q 011605 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322 (481)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 322 (481)
....++++||||++..........+.++............ ..+..+ .......|...
T Consensus 203 ---------------------~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a-~ki~q~-v~v~~e~Kl~~ 259 (844)
T TIGR02621 203 ---------------------FLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAA-KKIVKL-VPPSDEKFLST 259 (844)
T ss_pred ---------------------cccceEEEEecCCCccHHHHHHHHccCCceeecccccccc-cceEEE-EecChHHHHHH
Confidence 0124799999999876655544444444333222221111 111122 11222223322
Q ss_pred HHHHH---HhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHH-----HHHHHHhc----CC-----
Q 011605 323 LVALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS-----KTLKAFRE----GK----- 385 (481)
Q Consensus 323 l~~~l---~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----g~----- 385 (481)
+...+ ....++++||||++++.++.+++.|++.+ . ..+||.|+..+|. .+++.|++ |+
T Consensus 260 lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g---~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~ 334 (844)
T TIGR02621 260 MVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK---F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQ 334 (844)
T ss_pred HHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC---C--eEeeCCCCHHHHhhHHHHHHHHHHhcccccccccccc
Confidence 22222 12346789999999999999999998765 3 8899999999999 77899987 43
Q ss_pred --ceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccE-EEEe
Q 011605 386 --IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC-FTLL 439 (481)
Q Consensus 386 --~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~-~~~~ 439 (481)
..|||||+++++|+|++. ++||+...| ..+|+||+||+||.|+.+.+ +.++
T Consensus 335 ~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 335 QGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred ccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 689999999999999986 888887665 68999999999999986333 4443
No 56
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.6e-36 Score=297.82 Aligned_cols=374 Identities=20% Similarity=0.240 Sum_probs=271.6
Q ss_pred HHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHh------ccCCccEEEEcccHHHHHHH
Q 011605 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR------AVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 44 ~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~------~~~~~~~lil~Pt~~L~~q~ 117 (481)
.-++|.+++..|.++++.+.+ .+.|+++|||||+|||..++++++..+... ...+.+++||+|.++|+.++
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~---SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em 180 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYK---SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEM 180 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhc---CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHH
Confidence 447888999999999998776 578999999999999999999999998862 13567999999999999999
Q ss_pred HHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCC--Cccc
Q 011605 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR--GFTL 195 (481)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~--~~~~ 195 (481)
.+.+.+-+..+|+.+..++|+........ ..++|+|+||+++--.-+++. ...+
T Consensus 181 ~~~~~kkl~~~gi~v~ELTGD~ql~~tei------------------------~~tqiiVTTPEKwDvvTRk~~~d~~l~ 236 (1230)
T KOG0952|consen 181 VDKFSKKLAPLGISVRELTGDTQLTKTEI------------------------ADTQIIVTTPEKWDVVTRKSVGDSALF 236 (1230)
T ss_pred HHHHhhhcccccceEEEecCcchhhHHHH------------------------HhcCEEEecccceeeeeeeeccchhhh
Confidence 99999888888999999999997665532 345999999999743333322 1246
Q ss_pred CCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeecee
Q 011605 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (481)
Q Consensus 196 ~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat 275 (481)
+.+.+||+||+| ++.+..+..++.|..+....... .-..++++.+|||
T Consensus 237 ~~V~LviIDEVH-lLhd~RGpvlEtiVaRtlr~ves-------------------------------sqs~IRivgLSAT 284 (1230)
T KOG0952|consen 237 SLVRLVIIDEVH-LLHDDRGPVLETIVARTLRLVES-------------------------------SQSMIRIVGLSAT 284 (1230)
T ss_pred hheeeEEeeeeh-hhcCcccchHHHHHHHHHHHHHh-------------------------------hhhheEEEEeecc
Confidence 778999999999 55777889999998887532210 0135689999999
Q ss_pred eccCchhhhcccccCCc---eeecCCccccCcccccccccccCCCchHH-----HHHHHHHhc-CCCeEEEEecchhhHH
Q 011605 276 LTQDPNKLAQLDLHHPL---FLTTGETRYKLPERLESYKLICESKLKPL-----YLVALLQSL-GEEKCIVFTSSVESTH 346 (481)
Q Consensus 276 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~l~~~-~~~~~lVf~~s~~~~~ 346 (481)
+++-.+....+....+. .+........+....-..... ....+.. ...+.++.. .+.+++|||+++..+.
T Consensus 285 lPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~-~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti 363 (1230)
T KOG0952|consen 285 LPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGK-KNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETI 363 (1230)
T ss_pred CCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecc-cchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHH
Confidence 98765554444433222 222222221111111111111 1111111 122222222 4789999999999999
Q ss_pred HHHHHHhhccc--------------------cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcE
Q 011605 347 RLCTLLNHFGE--------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 406 (481)
Q Consensus 347 ~l~~~L~~~~~--------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~ 406 (481)
..|+.|.+... ...+.+++|.+|...+|..+.+.|..|..+||+||..+..|+|+|+ .+
T Consensus 364 ~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA-~a 442 (1230)
T KOG0952|consen 364 RTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPA-YA 442 (1230)
T ss_pred HHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcc-eE
Confidence 99999865211 1146789999999999999999999999999999999999999996 55
Q ss_pred EEEcCCC-----------CChhHHHHHhhhcccCCCC--ccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhhhhh
Q 011605 407 VVNYDKP-----------AYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLR 473 (481)
Q Consensus 407 Vi~~~~~-----------~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (481)
||+.+.+ .+..+.+|.+|||||..-+ |.++++.+.+....+.+++..-+... .++-.-++++|+
T Consensus 443 ViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piE---S~~~~~L~dnLn 519 (1230)
T KOG0952|consen 443 VIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIE---SQLLPCLIDNLN 519 (1230)
T ss_pred EEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhH---HHHHHHHHHhhh
Confidence 5554322 2356889999999996644 99999998888888888876554433 566677788888
Q ss_pred ccccCCCC
Q 011605 474 PVYKSGDV 481 (481)
Q Consensus 474 ~~~~~~~~ 481 (481)
++...|+|
T Consensus 520 AEi~LgTV 527 (1230)
T KOG0952|consen 520 AEISLGTV 527 (1230)
T ss_pred hheeecee
Confidence 88777764
No 57
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.1e-35 Score=290.92 Aligned_cols=312 Identities=18% Similarity=0.164 Sum_probs=211.5
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
..|+++|.+++..++. +.+.++++|||+|||.++...+ ..+... ...++||++||++|+.||.+.+++++...
T Consensus 113 ~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~-~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLS-RYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred CCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHH-HHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 4899999999988875 7789999999999999765422 222222 23389999999999999999999886433
Q ss_pred CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
...+..+.++.... .+.+|+|+|++++.+... ..+.++++||+||||+
T Consensus 186 ~~~~~~i~~g~~~~----------------------------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~ 233 (501)
T PHA02558 186 REAMHKIYSGTAKD----------------------------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHL 233 (501)
T ss_pred ccceeEEecCcccC----------------------------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhc
Confidence 33333333332210 235899999999876432 2367899999999999
Q ss_pred hhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhc-cc
Q 011605 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LD 287 (481)
Q Consensus 209 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~-~~ 287 (481)
+.+..+. .++..+.. ..+.+++|||+......... ..
T Consensus 234 ~~~~~~~----~il~~~~~--------------------------------------~~~~lGLTATp~~~~~~~~~~~~ 271 (501)
T PHA02558 234 FTGKSLT----SIITKLDN--------------------------------------CKFKFGLTGSLRDGKANILQYVG 271 (501)
T ss_pred ccchhHH----HHHHhhhc--------------------------------------cceEEEEeccCCCccccHHHHHH
Confidence 8765433 33333211 11578999998653221110 00
Q ss_pred ccCCceeec---------------------CCccccCc----ccc-cccccccCCCchHHHHHHHHHhc--CCCeEEEEe
Q 011605 288 LHHPLFLTT---------------------GETRYKLP----ERL-ESYKLICESKLKPLYLVALLQSL--GEEKCIVFT 339 (481)
Q Consensus 288 ~~~~~~~~~---------------------~~~~~~~~----~~~-~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~ 339 (481)
+-.+..... ........ ..+ ..+........+...+..+.... .+.+++|||
T Consensus 272 ~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~ 351 (501)
T PHA02558 272 LFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMF 351 (501)
T ss_pred hhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 000110000 00000000 000 00111222223333333333322 467899999
Q ss_pred cchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEc-cccccCCCCCCCcEEEEcCCCCChhH
Q 011605 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIKT 418 (481)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t-~~l~~Gvdl~~~~~Vi~~~~~~s~~~ 418 (481)
.++++++.+++.|.+.+ .++..+||+++.++|..+++.|++|+..+||+| +.+++|+|+|++++||++.++.|...
T Consensus 352 ~~~~h~~~L~~~L~~~g---~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~ 428 (501)
T PHA02558 352 KYVEHGKPLYEMLKKVY---DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKII 428 (501)
T ss_pred EEHHHHHHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhh
Confidence 99999999999999876 789999999999999999999999999999998 89999999999999999999999999
Q ss_pred HHHHhhhcccCCCC-ccEEEEeecchH
Q 011605 419 YIHRAGRTARAGQL-GRCFTLLHKDEV 444 (481)
Q Consensus 419 ~~Q~~GR~~R~~~~-g~~~~~~~~~~~ 444 (481)
|+||+||++|.+.. ..|.++...++.
T Consensus 429 ~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 429 VLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred hhhhhhccccCCCCCceEEEEEeeccc
Confidence 99999999998765 445555443333
No 58
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=8e-35 Score=299.46 Aligned_cols=346 Identities=24% Similarity=0.308 Sum_probs=261.3
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
....+...+...|...|++||.+|++.+.+ |++++|..|||||||.+|++|+++.+..++.. ++|++.||++|+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a--~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRDPSA--RALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhCcCc--cEEEEechhhhH
Confidence 445567888888988999999999999876 89999999999999999999999999997543 899999999999
Q ss_pred HHHHHHHHHhccccC--ceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCC
Q 011605 115 LQVKDVFAAIAPAVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~ 192 (481)
+++.+.++++...++ +.+..++|++....... .+.+.++|++|||+++...+.+...
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~---------------------~~~~pp~IllTNpdMLh~~llr~~~ 187 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRA---------------------IIRNPPDILLTNPDMLHYLLLRNHD 187 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHH---------------------HHhCCCCEEEeCHHHHHHHhccCcc
Confidence 999999999988876 88889999987665532 2346789999999999885544332
Q ss_pred c---ccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceee
Q 011605 193 F---TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (481)
Q Consensus 193 ~---~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (481)
. .++.+++||+||+|. ....++.++..+++++...... .....++
T Consensus 188 ~~~~~~~~Lk~lVvDElHt-YrGv~GS~vA~llRRL~~~~~~-------------------------------~~~~~q~ 235 (851)
T COG1205 188 AWLWLLRNLKYLVVDELHT-YRGVQGSEVALLLRRLLRRLRR-------------------------------YGSPLQI 235 (851)
T ss_pred hHHHHHhcCcEEEEeccee-ccccchhHHHHHHHHHHHHHhc-------------------------------cCCCceE
Confidence 2 367799999999995 4777888888888877543210 0135589
Q ss_pred eeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccC---------CCchHHHHHHHHHhc--CCCeEEEE
Q 011605 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE---------SKLKPLYLVALLQSL--GEEKCIVF 338 (481)
Q Consensus 270 v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k~~~l~~~l~~~--~~~~~lVf 338 (481)
++.|||....................... ..+.....+....+ ...+...+..+.... .+-++|+|
T Consensus 236 i~~SAT~~np~e~~~~l~~~~f~~~v~~~---g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F 312 (851)
T COG1205 236 ICTSATLANPGEFAEELFGRDFEVPVDED---GSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVF 312 (851)
T ss_pred EEEeccccChHHHHHHhcCCcceeeccCC---CCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEE
Confidence 99999998665554444333222211111 11111111211111 112222222222222 46799999
Q ss_pred ecchhhHHHHH----HHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCC
Q 011605 339 TSSVESTHRLC----TLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (481)
Q Consensus 339 ~~s~~~~~~l~----~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~ 413 (481)
+.+.+.++.+. +.+...+ .....+..+++++...+|..+...|++|+..++++|++++.|+|+.+++.||..+.|
T Consensus 313 ~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P 392 (851)
T COG1205 313 FRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYP 392 (851)
T ss_pred EehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCC
Confidence 99999999996 3333333 333568899999999999999999999999999999999999999999999999999
Q ss_pred C-ChhHHHHHhhhcccCCCCccEEEEeecc
Q 011605 414 A-YIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (481)
Q Consensus 414 ~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 442 (481)
. +..+++|+.||+||.++.+..+.+...+
T Consensus 393 ~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 393 GVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred CchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 9 8999999999999999777777776644
No 59
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-35 Score=244.79 Aligned_cols=327 Identities=26% Similarity=0.398 Sum_probs=267.8
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
|.|++++++-..||..|+..|.+++++.+- |-++++.|..|.|||.++.++.++.+..- .....++++|.|++|+
T Consensus 49 lkpellraivdcgfehpsevqhecipqail----gmdvlcqaksgmgktavfvl~tlqqiepv-~g~vsvlvmchtrela 123 (387)
T KOG0329|consen 49 LKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQIEPV-DGQVSVLVMCHTRELA 123 (387)
T ss_pred cCHHHHHHHHhccCCCchHhhhhhhhHHhh----cchhheecccCCCceeeeehhhhhhcCCC-CCeEEEEEEeccHHHH
Confidence 999999999999999999999999999876 88999999999999999999888887664 2355799999999999
Q ss_pred HHHHHHHHHhcccc-CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCc
Q 011605 115 LQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 115 ~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
-|+..++.++.+.. ++++.+..|+..+.+....+. ..|.|+++||+++..+.+. +.+
T Consensus 124 fqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk---------------------~~PhivVgTPGrilALvr~-k~l 181 (387)
T KOG0329|consen 124 FQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLK---------------------NCPHIVVGTPGRILALVRN-RSL 181 (387)
T ss_pred HHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHh---------------------CCCeEEEcCcHHHHHHHHh-ccC
Confidence 99999999998877 789999999998776654433 4569999999999998876 558
Q ss_pred ccCCccEEEEechhHhhHH-HHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeee
Q 011605 194 TLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (481)
+++++...|+|||+.++.+ ..+..++.+++..+. .-|++.+
T Consensus 182 ~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~--------------------------------------~KQvmmf 223 (387)
T KOG0329|consen 182 NLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPH--------------------------------------EKQVMMF 223 (387)
T ss_pred chhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcc--------------------------------------cceeeee
Confidence 8999999999999988664 566777778777653 2378899
Q ss_pred ceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHH
Q 011605 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (481)
Q Consensus 273 sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (481)
|||+++++......++.+|..+-...+....-...+.++......+|...+.+++....-++++||+.|+....
T Consensus 224 satlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~------ 297 (387)
T KOG0329|consen 224 SATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRLS------ 297 (387)
T ss_pred eeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhhh------
Confidence 99999999999999999887665555444444556666676777777778888888888889999999876510
Q ss_pred hhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCC
Q 011605 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~ 432 (481)
| ..+ +|+|+.+++|+|+-.++.+++|+.|.+...|++|.|||||.|..
T Consensus 298 ----------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtk 345 (387)
T KOG0329|consen 298 ----------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 345 (387)
T ss_pred ----------------------------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccc
Confidence 2 113 88999999999999999999999999999999999999999999
Q ss_pred ccEEEEeecc-hHHHHHHHHHHhcCCCCCCCCCCch
Q 011605 433 GRCFTLLHKD-EVKRFKKLLQKADNDSCPIHSIPSS 467 (481)
Q Consensus 433 g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (481)
|.++.|++.. +.+.+..+-+..+. .+..+|++
T Consensus 346 glaitfvs~e~da~iLn~vqdRf~v---~i~eLpde 378 (387)
T KOG0329|consen 346 GLAITFVSDENDAKILNPVQDRFEV---NIKELPDE 378 (387)
T ss_pred cceeehhcchhhHHHhchhhHhhhc---cHhhcCcc
Confidence 9999998764 44555555555543 23555655
No 60
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.9e-34 Score=283.71 Aligned_cols=313 Identities=19% Similarity=0.204 Sum_probs=210.9
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
..+|+||.+++..++... ..++.++++|||+|||++++.++.. + +.++|||||+..|+.||.+++.+++...
T Consensus 254 ~~LRpYQ~eAl~~~~~~g-r~r~GIIvLPtGaGKTlvai~aa~~-l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVTAACT-V------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCcCHHHHHHHHHHHhcC-CCCCcEEEeCCCCChHHHHHHHHHH-h------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 369999999999876421 1246899999999999998765543 2 2369999999999999999999986433
Q ss_pred CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCC-------CcccCCccEE
Q 011605 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-------GFTLEHLCYL 201 (481)
Q Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~-------~~~~~~~~~i 201 (481)
...+..++|+.... ......|+|+|++++.....+.. .+.-..+++|
T Consensus 326 ~~~I~~~tg~~k~~--------------------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLI 379 (732)
T TIGR00603 326 DSQICRFTSDAKER--------------------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLI 379 (732)
T ss_pred CceEEEEecCcccc--------------------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEE
Confidence 44555555543210 01234899999998854322210 1223468899
Q ss_pred EEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCch
Q 011605 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281 (481)
Q Consensus 202 VvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~ 281 (481)
|+||||++.+..+...+..+-.. ..+++|||+.....
T Consensus 380 I~DEvH~lpA~~fr~il~~l~a~-------------------------------------------~RLGLTATP~ReD~ 416 (732)
T TIGR00603 380 LLDEVHVVPAAMFRRVLTIVQAH-------------------------------------------CKLGLTATLVREDD 416 (732)
T ss_pred EEEccccccHHHHHHHHHhcCcC-------------------------------------------cEEEEeecCcccCC
Confidence 99999999776655433322111 35777888764332
Q ss_pred hhhcc-cccCCceeecCCcc-----ccC------------ccccccc---------ccccCCCchHHHHHHHHHhc--CC
Q 011605 282 KLAQL-DLHHPLFLTTGETR-----YKL------------PERLESY---------KLICESKLKPLYLVALLQSL--GE 332 (481)
Q Consensus 282 ~~~~~-~~~~~~~~~~~~~~-----~~~------------~~~~~~~---------~~~~~~~~k~~~l~~~l~~~--~~ 332 (481)
..... .+-.|.+....... +.. +.....| .....+..|...+..+++.+ .+
T Consensus 417 ~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g 496 (732)
T TIGR00603 417 KITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRG 496 (732)
T ss_pred chhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcC
Confidence 21111 11112111111000 000 0000000 11122334556666666654 67
Q ss_pred CeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcC-CceEEEEccccccCCCCCCCcEEEEcC
Q 011605 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~iLv~t~~l~~Gvdl~~~~~Vi~~~ 411 (481)
.++||||.+...+..+++.|. +..+||.++..+|..++++|++| ..++||+|.++.+|+|+|++++||+++
T Consensus 497 ~kiLVF~~~~~~l~~~a~~L~--------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s 568 (732)
T TIGR00603 497 DKIIVFSDNVFALKEYAIKLG--------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQIS 568 (732)
T ss_pred CeEEEEeCCHHHHHHHHHHcC--------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeC
Confidence 899999999999999888762 35689999999999999999975 789999999999999999999999999
Q ss_pred CC-CChhHHHHHhhhcccCCCCccE-------EEEeecchHHH
Q 011605 412 KP-AYIKTYIHRAGRTARAGQLGRC-------FTLLHKDEVKR 446 (481)
Q Consensus 412 ~~-~s~~~~~Q~~GR~~R~~~~g~~-------~~~~~~~~~~~ 446 (481)
.+ .|...|+||+||++|.+..|.+ |.+++.+..++
T Consensus 569 ~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 569 SHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred CCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHH
Confidence 87 5999999999999998766554 77777765543
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.2e-33 Score=269.89 Aligned_cols=315 Identities=18% Similarity=0.181 Sum_probs=204.7
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhh
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 150 (481)
++++.+|||+|||.+++++++..+... .+.+++|++|+++|+.|+.+.+..++.. .+...++....... ....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~--~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~-~~~~- 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ--KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRI-KEMG- 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC--CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHH-hccC-
Confidence 478999999999999999999876543 3458999999999999999999987532 34444444322100 0000
Q ss_pred ccccccCccCChhhHHHh------hcCCCcEEEeCchHHHHHHhcCC-C--ccc--CCccEEEEechhHhhHHHHhhhHH
Q 011605 151 RPKLEAGICYDPEDVLQE------LQSAVDILVATPGRLMDHINATR-G--FTL--EHLCYLVVDETDRLLREAYQAWLP 219 (481)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~------~~~~~~Ili~T~~~l~~~l~~~~-~--~~~--~~~~~iVvDE~H~l~~~~~~~~~~ 219 (481)
.. ......+.. ......|+++||+.+...+.... . ..+ -..+++|+||+|.+...++.. +.
T Consensus 74 ~~-------~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 74 DS-------EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred Cc-------hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 00 000000000 11235799999999988766521 1 111 123799999999987765443 44
Q ss_pred HHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCc
Q 011605 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (481)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~ 299 (481)
.++..+.. ...+.+++|||++.....+................
T Consensus 146 ~~l~~l~~-------------------------------------~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~ 188 (358)
T TIGR01587 146 AVLEVLKD-------------------------------------NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK 188 (358)
T ss_pred HHHHHHHH-------------------------------------cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc
Confidence 44443321 23478999999985554444333222111100000
Q ss_pred cccCccccccccc-ccCCCchHHHHHHHHHhc-CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHH
Q 011605 300 RYKLPERLESYKL-ICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377 (481)
Q Consensus 300 ~~~~~~~~~~~~~-~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~ 377 (481)
... ....+.+.. ......+...+..++... .++++||||+++++++.+++.|++.+. ...+..+||+++..+|.+.
T Consensus 189 ~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~-~~~~~~~h~~~~~~~r~~~ 266 (358)
T TIGR01587 189 EER-RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAP-EEEIMLLHSRFTEKDRAKK 266 (358)
T ss_pred ccc-ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcC-CCeEEEEECCCCHHHHHHH
Confidence 000 000111111 112234455555555443 467999999999999999999987652 1358899999999999764
Q ss_pred ----HHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCC----ccEEEEeecc
Q 011605 378 ----LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL----GRCFTLLHKD 442 (481)
Q Consensus 378 ----~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~----g~~~~~~~~~ 442 (481)
++.|++|+..+||||+++++|+|++ ++.||++..| ..+|+||+||+||.|+. |.++++....
T Consensus 267 ~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 267 EAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 8899999999999999999999996 7888887665 78999999999998865 3677776643
No 62
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=7.7e-34 Score=289.86 Aligned_cols=340 Identities=22% Similarity=0.331 Sum_probs=263.6
Q ss_pred HHHHHHH-HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHH
Q 011605 38 RLKVALQ-NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 38 ~l~~~~~-~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (481)
+....+. .+|...+|+.|.+++..++. |++.++.+|||.||+++|.+|++- -++.+|+|.|..+|.++
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQlPA~l-------~~gitvVISPL~SLm~D 319 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQLPALL-------LGGVTVVISPLISLMQD 319 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHc----CCceEEEeecCCceeeEeeccccc-------cCCceEEeccHHHHHHH
Confidence 4555555 48999999999999987776 999999999999999999998763 23479999999999988
Q ss_pred HHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcC---CCcEEEeCchHHHHHHhcCCC-
Q 011605 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS---AVDILVATPGRLMDHINATRG- 192 (481)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Ili~T~~~l~~~l~~~~~- 192 (481)
+...+... ++....+.+..........+ +.+.. ..+|+..||+++...-.....
T Consensus 320 Qv~~L~~~----~I~a~~L~s~q~~~~~~~i~------------------q~l~~~~~~ikilYvtPE~v~~~~~l~~~~ 377 (941)
T KOG0351|consen 320 QVTHLSKK----GIPACFLSSIQTAAERLAIL------------------QKLANGNPIIKILYVTPEKVVASEGLLESL 377 (941)
T ss_pred HHHhhhhc----CcceeeccccccHHHHHHHH------------------HHHhCCCCeEEEEEeCHHHhhcccchhhHH
Confidence 77666444 88999999988765443222 22222 368999999998654322111
Q ss_pred cccCC---ccEEEEechhHhhHHH--HhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcce
Q 011605 193 FTLEH---LCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (481)
Q Consensus 193 ~~~~~---~~~iVvDE~H~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (481)
..+.. +.++|+||||+...|+ |+..+..+...... ++.+
T Consensus 378 ~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~------------------------------------~~~v 421 (941)
T KOG0351|consen 378 ADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR------------------------------------FPGV 421 (941)
T ss_pred HhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhh------------------------------------CCCC
Confidence 12333 7899999999998886 45555555544322 1446
Q ss_pred eeeeeceeeccCchh--hhcccccCCceeecCCccccCcccccccccccCC--CchHHHHHHHHHhcCCCeEEEEecchh
Q 011605 268 VKMVLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICES--KLKPLYLVALLQSLGEEKCIVFTSSVE 343 (481)
Q Consensus 268 ~~v~~sat~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~l~~~l~~~~~~~~lVf~~s~~ 343 (481)
+++.+|||.+..+.. ...+.+.++.++.....+.++. +.+.... ......+......+..+.+||||.++.
T Consensus 422 P~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~-----yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~ 496 (941)
T KOG0351|consen 422 PFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLK-----YEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRK 496 (941)
T ss_pred CeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCce-----EEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcc
Confidence 899999999776655 4445666777665555443332 2222222 222333344444557889999999999
Q ss_pred hHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHh
Q 011605 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423 (481)
Q Consensus 344 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~ 423 (481)
+|+.++..|...+ .....||++|+..+|..+..+|..++.+|+|||=++++|+|.|+++.||||..|.|...|.|-+
T Consensus 497 ~ce~vs~~L~~~~---~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~ 573 (941)
T KOG0351|consen 497 ECEQVSAVLRSLG---KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEA 573 (941)
T ss_pred hHHHHHHHHHHhc---hhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhc
Confidence 9999999999887 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCccEEEEeecchHHHHHHHHHHh
Q 011605 424 GRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (481)
Q Consensus 424 GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (481)
|||||+|....|++|+...|...++.++..-
T Consensus 574 GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 574 GRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred cccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 9999999999999999999999988888765
No 63
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.5e-33 Score=288.93 Aligned_cols=301 Identities=20% Similarity=0.255 Sum_probs=211.7
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHH-hccccCceEEEeccCcchHHH
Q 011605 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQSSIADE 144 (481)
Q Consensus 66 ~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~ 144 (481)
+..+++++++++||||||.++..++++... .+.+++++.|++.++.|.++.+.+ +....|..++...+...
T Consensus 14 l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~---- 85 (819)
T TIGR01970 14 LAAHPQVVLEAPPGAGKSTAVPLALLDAPG----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN---- 85 (819)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHHHhhc----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc----
Confidence 334788999999999999999988887652 234899999999999999988754 33333444544333221
Q ss_pred HHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH-hhHHHHhh-hHHHHH
Q 011605 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQA-WLPTVL 222 (481)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~-l~~~~~~~-~~~~l~ 222 (481)
.....++|+|+|++.+.+.+... ..++++++|||||+|. .++.++.- .+..+.
T Consensus 86 -----------------------~~s~~t~I~v~T~G~Llr~l~~d--~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~ 140 (819)
T TIGR01970 86 -----------------------KVSRRTRLEVVTEGILTRMIQDD--PELDGVGALIFDEFHERSLDADLGLALALDVQ 140 (819)
T ss_pred -----------------------ccCCCCcEEEECCcHHHHHHhhC--cccccCCEEEEeccchhhhccchHHHHHHHHH
Confidence 11234689999999999988753 4588999999999995 44433221 112222
Q ss_pred HhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCcccc
Q 011605 223 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK 302 (481)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (481)
..+. +..++++||||+.... + ..++.++..+......+.
T Consensus 141 ~~lr--------------------------------------~dlqlIlmSATl~~~~--l-~~~l~~~~vI~~~gr~~p 179 (819)
T TIGR01970 141 SSLR--------------------------------------EDLKILAMSATLDGER--L-SSLLPDAPVVESEGRSFP 179 (819)
T ss_pred HhcC--------------------------------------CCceEEEEeCCCCHHH--H-HHHcCCCcEEEecCccee
Confidence 2111 3458999999997542 2 233333322222222111
Q ss_pred CcccccccccccCCCchH-----HHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHH
Q 011605 303 LPERLESYKLICESKLKP-----LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377 (481)
Q Consensus 303 ~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~ 377 (481)
++.++.......+. ..+...+.. ..+++|||+++..+++.+++.|.+....++.+..+||+++..+|.++
T Consensus 180 ----Ve~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~ 254 (819)
T TIGR01970 180 ----VEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRA 254 (819)
T ss_pred ----eeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHH
Confidence 11222212222221 123333332 36789999999999999999998632234788999999999999999
Q ss_pred HHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCC------------------ChhHHHHHhhhcccCCCCccEEEEe
Q 011605 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------------------YIKTYIHRAGRTARAGQLGRCFTLL 439 (481)
Q Consensus 378 ~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~------------------s~~~~~Q~~GR~~R~~~~g~~~~~~ 439 (481)
++.|++|..+|||||++++.|+|+|++++||+++.+. |.+++.||.||+||. +.|.||.++
T Consensus 255 ~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~ 333 (819)
T TIGR01970 255 IKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLW 333 (819)
T ss_pred HhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeC
Confidence 9999999999999999999999999999999998764 345689999999998 799999999
Q ss_pred ecchHHH
Q 011605 440 HKDEVKR 446 (481)
Q Consensus 440 ~~~~~~~ 446 (481)
++.+...
T Consensus 334 t~~~~~~ 340 (819)
T TIGR01970 334 SEEQHQR 340 (819)
T ss_pred CHHHHHh
Confidence 9776543
No 64
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-33 Score=252.32 Aligned_cols=340 Identities=19% Similarity=0.233 Sum_probs=239.6
Q ss_pred HHHHHHH-CCCCcc-chhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHH
Q 011605 39 LKVALQN-MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 39 l~~~~~~-~~~~~~-~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (481)
+..+|+. ||+..+ ++.|..|+..++. ..+++.+++|||+||+++|.+|++- .+..+|++.|..+|+.+
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPaL~-------~~gITIV~SPLiALIkD 76 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPALV-------HGGITIVISPLIALIKD 76 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchHHH-------hCCeEEEehHHHHHHHH
Confidence 4555664 777665 5788888887776 4689999999999999999999774 22379999999999999
Q ss_pred HHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHH-----HHhcCC
Q 011605 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD-----HINATR 191 (481)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~-----~l~~~~ 191 (481)
+.+.+.++ .+.+.-+.+..+..+......+ .........++..||+.... +|...
T Consensus 77 QiDHL~~L----KVp~~SLNSKlSt~ER~ri~~D---------------L~~ekp~~K~LYITPE~AAt~~FQ~lLn~L- 136 (641)
T KOG0352|consen 77 QIDHLKRL----KVPCESLNSKLSTVERSRIMGD---------------LAKEKPTIKMLYITPEGAATDGFQKLLNGL- 136 (641)
T ss_pred HHHHHHhc----CCchhHhcchhhHHHHHHHHHH---------------HHhcCCceeEEEEchhhhhhhhHHHHHHHH-
Confidence 88888877 5555556665554444222211 11222346799999986533 22221
Q ss_pred CcccCCccEEEEechhHhhHHHHh--hhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceee
Q 011605 192 GFTLEHLCYLVVDETDRLLREAYQ--AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (481)
Q Consensus 192 ~~~~~~~~~iVvDE~H~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (481)
..-..+.++||||||+...|+.. ..+-.+-. .....+..+.
T Consensus 137 -~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~------------------------------------LRS~~~~vpw 179 (641)
T KOG0352|consen 137 -ANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGS------------------------------------LRSVCPGVPW 179 (641)
T ss_pred -hhhceeeeEEechhhhHhhhccccCcchhhhhh------------------------------------HHhhCCCCce
Confidence 12345789999999999877532 22211111 1122366789
Q ss_pred eeeceeeccCchhh--hcccccCCcee-ecCCccccCcccccccccccCCCchHHHHHHHHHhc-------------CCC
Q 011605 270 MVLSATLTQDPNKL--AQLDLHHPLFL-TTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-------------GEE 333 (481)
Q Consensus 270 v~~sat~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-------------~~~ 333 (481)
+.++||......+. ..+.++.|+-+ .....+.++...++ +... -......|.++.... ..+
T Consensus 180 vALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~-~K~~--I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~G 256 (641)
T KOG0352|consen 180 VALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNH-MKSF--ITDCLTVLADFSSSNLGKHEKASQNKKTFTG 256 (641)
T ss_pred EEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHH-HHHH--hhhHhHhHHHHHHHhcCChhhhhcCCCCcCc
Confidence 99999998777663 34455565432 22211111111100 0000 011112222222211 235
Q ss_pred eEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCC
Q 011605 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (481)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~ 413 (481)
..||||.++++|++++-.|...| +++..+|.++...||.++.++|-+++..||++|..+++|+|-|++++|||++.+
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~G---i~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~ 333 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAG---IPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPS 333 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcC---cchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCch
Confidence 68999999999999999999877 889999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHH
Q 011605 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451 (481)
Q Consensus 414 ~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 451 (481)
.|.+-|.|-.||+||.|...+|.+||..+|...+.=++
T Consensus 334 qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 334 QNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred hhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 99999999999999999999999999998876654443
No 65
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.6e-33 Score=280.49 Aligned_cols=321 Identities=15% Similarity=0.116 Sum_probs=217.0
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHh---------HHHHHHHHHH--hccCCccEEEEcccHHHHHHH
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY---------ALPIVQTLSN--RAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~---------~~~~~~~l~~--~~~~~~~~lil~Pt~~L~~q~ 117 (481)
..+++.|.++.++++..+..++++++.|+||+|||.+. +++.+..+.. ......++++++||++|+.|+
T Consensus 159 ~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi 238 (675)
T PHA02653 159 IPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLH 238 (675)
T ss_pred ccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHH
Confidence 46677787777777777777999999999999999862 2233333321 112345899999999999999
Q ss_pred HHHHHHhccc---cCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcc
Q 011605 118 KDVFAAIAPA---VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 118 ~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~ 194 (481)
...+.+.... .+..+....|+...... . ......+|+++|+.... ..
T Consensus 239 ~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~--~--------------------t~~k~~~Ilv~T~~L~l--------~~ 288 (675)
T PHA02653 239 SITLLKSLGFDEIDGSPISLKYGSIPDELI--N--------------------TNPKPYGLVFSTHKLTL--------NK 288 (675)
T ss_pred HHHHHHHhCccccCCceEEEEECCcchHHh--h--------------------cccCCCCEEEEeCcccc--------cc
Confidence 9888765433 25566777777652111 0 01124589999965211 23
Q ss_pred cCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeece
Q 011605 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 274 (481)
++++++||+||||.+...+ +.+..++..... ...++++|||
T Consensus 289 L~~v~~VVIDEaHEr~~~~--DllL~llk~~~~-------------------------------------~~rq~ILmSA 329 (675)
T PHA02653 289 LFDYGTVIIDEVHEHDQIG--DIIIAVARKHID-------------------------------------KIRSLFLMTA 329 (675)
T ss_pred cccCCEEEccccccCccch--hHHHHHHHHhhh-------------------------------------hcCEEEEEcc
Confidence 6789999999999875443 333333322110 0116899999
Q ss_pred eeccCchhhhcccccCCceeecCCccccCcccccccccccC----------CCchHHHHHHHHHh---cCCCeEEEEecc
Q 011605 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE----------SKLKPLYLVALLQS---LGEEKCIVFTSS 341 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~~---~~~~~~lVf~~s 341 (481)
|++.+...+ ..++.++..+...... ...++.+..... ...+.. +...+.. ..++++|||+++
T Consensus 330 Tl~~dv~~l-~~~~~~p~~I~I~grt---~~pV~~~yi~~~~~~~~~~~y~~~~k~~-~l~~L~~~~~~~~g~iLVFlpg 404 (675)
T PHA02653 330 TLEDDRDRI-KEFFPNPAFVHIPGGT---LFPISEVYVKNKYNPKNKRAYIEEEKKN-IVTALKKYTPPKGSSGIVFVAS 404 (675)
T ss_pred CCcHhHHHH-HHHhcCCcEEEeCCCc---CCCeEEEEeecCcccccchhhhHHHHHH-HHHHHHHhhcccCCcEEEEECc
Confidence 998666555 3455555544332211 011111111100 011222 2222322 235689999999
Q ss_pred hhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHH-hcCCceEEEEccccccCCCCCCCcEEEEcC---CCC---
Q 011605 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF-REGKIQVLVSSDAMTRGMDVEGVNNVVNYD---KPA--- 414 (481)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~---~~~--- 414 (481)
..+++.+++.|.+.. .+..+..+||+++.. ++.+++| ++|+.+|||||+++++|+|+|++++||+++ .|.
T Consensus 405 ~~ei~~l~~~L~~~~-~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~ 481 (675)
T PHA02653 405 VSQCEEYKKYLEKRL-PIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFG 481 (675)
T ss_pred HHHHHHHHHHHHhhc-CCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCccc
Confidence 999999999998752 137899999999974 5667777 689999999999999999999999999998 444
Q ss_pred ------ChhHHHHHhhhcccCCCCccEEEEeecchHHHH
Q 011605 415 ------YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447 (481)
Q Consensus 415 ------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 447 (481)
|.+++.||+||+||. ++|.|+.++++.+...+
T Consensus 482 g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI 519 (675)
T PHA02653 482 GKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPI 519 (675)
T ss_pred CcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHH
Confidence 788999999999999 78999999998766443
No 66
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.1e-33 Score=288.62 Aligned_cols=304 Identities=21% Similarity=0.250 Sum_probs=211.6
Q ss_pred hhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHH-hccccCceEEEeccCcc
Q 011605 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQSS 140 (481)
Q Consensus 62 ~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~ 140 (481)
++..+..++++++.|+||||||.++.+++++... .+.+++++.|++.++.|.++.+.+ +....|..++...+...
T Consensus 13 i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~----~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~ 88 (812)
T PRK11664 13 LLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG----INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES 88 (812)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC----cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc
Confidence 3333334789999999999999999888776432 234899999999999999988754 33444556665554432
Q ss_pred hHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHh-hHHHH-hhhH
Q 011605 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-LREAY-QAWL 218 (481)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l-~~~~~-~~~~ 218 (481)
. .....+|+|+|++.+.+.+... ..++++++|||||+|.. ++..+ ...+
T Consensus 89 ~---------------------------~~~~t~I~v~T~G~Llr~l~~d--~~L~~v~~IIlDEaHER~l~~Dl~L~ll 139 (812)
T PRK11664 89 K---------------------------VGPNTRLEVVTEGILTRMIQRD--PELSGVGLVILDEFHERSLQADLALALL 139 (812)
T ss_pred c---------------------------cCCCCcEEEEChhHHHHHHhhC--CCcCcCcEEEEcCCCccccccchHHHHH
Confidence 1 1123489999999999988753 46899999999999962 22111 1111
Q ss_pred HHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCC
Q 011605 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (481)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~ 298 (481)
..+...++ +..++++||||+... .+ ..++.++..+....
T Consensus 140 ~~i~~~lr--------------------------------------~~lqlilmSATl~~~--~l-~~~~~~~~~I~~~g 178 (812)
T PRK11664 140 LDVQQGLR--------------------------------------DDLKLLIMSATLDND--RL-QQLLPDAPVIVSEG 178 (812)
T ss_pred HHHHHhCC--------------------------------------ccceEEEEecCCCHH--HH-HHhcCCCCEEEecC
Confidence 22221111 345899999999643 22 23333332222221
Q ss_pred ccccCcccccccccccCCCchHH-----HHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHH
Q 011605 299 TRYKLPERLESYKLICESKLKPL-----YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373 (481)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 373 (481)
..+. ++.++.......+.. .+...+.. ..+.+|||+++..+++.+++.|.+....+..+..+||+++..+
T Consensus 179 r~~p----V~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~e 253 (812)
T PRK11664 179 RSFP----VERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAE 253 (812)
T ss_pred cccc----ceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHH
Confidence 1111 122222122222221 23333332 3689999999999999999999863223478889999999999
Q ss_pred HHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCC------------------ChhHHHHHhhhcccCCCCccE
Q 011605 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------------------YIKTYIHRAGRTARAGQLGRC 435 (481)
Q Consensus 374 r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~------------------s~~~~~Q~~GR~~R~~~~g~~ 435 (481)
|...++.|++|+.+|||||++++.|+|+|++++||+++.+. |..++.||.||+||. +.|.|
T Consensus 254 q~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~c 332 (812)
T PRK11664 254 QQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGIC 332 (812)
T ss_pred HHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEE
Confidence 99999999999999999999999999999999999987664 345899999999998 69999
Q ss_pred EEEeecchHH
Q 011605 436 FTLLHKDEVK 445 (481)
Q Consensus 436 ~~~~~~~~~~ 445 (481)
|.++++.+..
T Consensus 333 yrL~t~~~~~ 342 (812)
T PRK11664 333 LHLYSKEQAE 342 (812)
T ss_pred EEecCHHHHh
Confidence 9999876553
No 67
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.3e-32 Score=297.52 Aligned_cols=361 Identities=17% Similarity=0.228 Sum_probs=238.7
Q ss_pred HHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHH
Q 011605 38 RLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 38 ~l~~~~~~-~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (481)
++.+.+++ +|| +|++.|.++++.++. |+++++.||||+|||+.++++++... ..+.+++|++||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~----~~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLA----LKGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHH----hcCCeEEEEECHHHHHHH
Confidence 34455555 899 799999999999887 89999999999999996555444322 134589999999999999
Q ss_pred HHHHHHHhcccc--CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcC-CCcEEEeCchHHHHHHhcCCCc
Q 011605 117 VKDVFAAIAPAV--GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 117 ~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
+...++.++... ++.+..++|+.+...+... +..+.. .++|+|+||+.+.+.+.. .
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~------------------~~~l~~g~~dILV~TPgrL~~~~~~---l 196 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEF------------------LERIENGDFDILVTTAQFLARNFPE---M 196 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHH------------------HHHHhcCCCCEEEECCchhHHhHHH---H
Confidence 999999988765 4667778888776554322 122333 489999999998876654 1
Q ss_pred ccCCccEEEEechhHhhHH-----------HHhhhHHH-HHHhcccccccccccccccccccccchhhhhccccccccCC
Q 011605 194 TLEHLCYLVVDETDRLLRE-----------AYQAWLPT-VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~l~~~-----------~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (481)
....++++|+||||+++.+ +|.+.+.. ++..+....... ..........+.. ....
T Consensus 197 ~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~-------~~~~~~~~~~l~~-----~~~~ 264 (1638)
T PRK14701 197 KHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGN-------IEDAMEKREILNK-----EIEK 264 (1638)
T ss_pred hhCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccc-------cchhhhhhhhhhh-----hhhh
Confidence 2267999999999999863 44444432 111211000000 0000000000000 0000
Q ss_pred CCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecc
Q 011605 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341 (481)
Q Consensus 262 ~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s 341 (481)
.+...-..+++|||........ ..+..+..+........+ ..+.+.........+ ..+..++... +.++||||++
T Consensus 265 ~~~~~~~ll~~SAT~~~r~~~~--~l~~~~l~f~v~~~~~~l-r~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t 339 (1638)
T PRK14701 265 IGNKIGCLIVASATGKAKGDRV--KLYRELLGFEVGSGRSAL-RNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPI 339 (1638)
T ss_pred cCCCccEEEEEecCCCchhHHH--HHhhcCeEEEecCCCCCC-CCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEec
Confidence 0111223577899987531111 122344444443333222 222233222222223 4566777665 5689999999
Q ss_pred hhh---HHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc----ccccCCCCCC-CcEEEEcCCC
Q 011605 342 VES---THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD----AMTRGMDVEG-VNNVVNYDKP 413 (481)
Q Consensus 342 ~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~----~l~~Gvdl~~-~~~Vi~~~~~ 413 (481)
.+. |+.+++.|.+.| +.+..+|++ |...+++|++|+.+|||||. .+++|+|+|+ +++||+++.|
T Consensus 340 ~~~~e~ae~la~~L~~~G---i~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~P 411 (1638)
T PRK14701 340 DEGAEKAEEIEKYLLEDG---FKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVP 411 (1638)
T ss_pred cccchHHHHHHHHHHHCC---CeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCC
Confidence 775 589999999876 899999985 88999999999999999994 7889999998 9999999999
Q ss_pred C---ChhHHHHH-------------hhhcccCCCCccEEEEeecchHHHHHHHHHH
Q 011605 414 A---YIKTYIHR-------------AGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453 (481)
Q Consensus 414 ~---s~~~~~Q~-------------~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~ 453 (481)
. +...|.|- .||++|.|..+.++..+...+...++++++.
T Consensus 412 k~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 412 KFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhcc
Confidence 8 66655554 4999999988888766666666666666544
No 68
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=3.2e-32 Score=265.93 Aligned_cols=327 Identities=24% Similarity=0.279 Sum_probs=219.7
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011605 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 47 ~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (481)
..-.+|.||.+..+.++ ++|.+|++|||+|||++++..|+..+..-+ ..++++++|++-|+.|+...+..++.
T Consensus 59 ~~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p--~~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRP--KGKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred CcccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCC--cceEEEeeCCchHHHHHHHHHhhccC
Confidence 34589999998877765 899999999999999999998888887754 36999999999999999977777765
Q ss_pred ccCceEEEeccC-cchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEec
Q 011605 127 AVGLSVGLAVGQ-SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 127 ~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE 205 (481)
. ..+....|+ .+..... .+...++|+|+||+.+.+.+.......++.|.++||||
T Consensus 132 ~--~~~T~~l~~~~~~~~r~----------------------~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE 187 (746)
T KOG0354|consen 132 P--YSVTGQLGDTVPRSNRG----------------------EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDE 187 (746)
T ss_pred c--ccceeeccCccCCCchh----------------------hhhcccceEEeChHhhhhhcccccccccceEEEEEEcc
Confidence 4 233233333 3322221 23345699999999999998886555579999999999
Q ss_pred hhHhhHHHHhhhH-HHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhh
Q 011605 206 TDRLLREAYQAWL-PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284 (481)
Q Consensus 206 ~H~l~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~ 284 (481)
||+.....-...+ ..+..... ...+++++|||+........
T Consensus 188 ~Hra~kn~~Y~~Vmr~~l~~k~--------------------------------------~~~qILgLTASpG~~~~~v~ 229 (746)
T KOG0354|consen 188 CHRTSKNHPYNNIMREYLDLKN--------------------------------------QGNQILGLTASPGSKLEQVQ 229 (746)
T ss_pred cccccccccHHHHHHHHHHhhh--------------------------------------ccccEEEEecCCCccHHHHH
Confidence 9986443222222 22222221 12268888888875522211
Q ss_pred cc----------------------------------------------------------ccc---CC-------ceeec
Q 011605 285 QL----------------------------------------------------------DLH---HP-------LFLTT 296 (481)
Q Consensus 285 ~~----------------------------------------------------------~~~---~~-------~~~~~ 296 (481)
.. .+. +. .....
T Consensus 230 ~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~ 309 (746)
T KOG0354|consen 230 NVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAE 309 (746)
T ss_pred HHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhh
Confidence 10 000 00 00000
Q ss_pred CCccccCccccc-------------------------cc-------------------------------------cccc
Q 011605 297 GETRYKLPERLE-------------------------SY-------------------------------------KLIC 314 (481)
Q Consensus 297 ~~~~~~~~~~~~-------------------------~~-------------------------------------~~~~ 314 (481)
.......+...+ .+ ....
T Consensus 310 ~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~ 389 (746)
T KOG0354|consen 310 KAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLD 389 (746)
T ss_pred hhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcC
Confidence 000000000000 00 0000
Q ss_pred --CCCchHHHHHHHHHhc----CCCeEEEEecchhhHHHHHHHHhhccccceeEEEc--------ccccChHHHHHHHHH
Q 011605 315 --ESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY--------SGLQRQSVRSKTLKA 380 (481)
Q Consensus 315 --~~~~k~~~l~~~l~~~----~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~--------~~~~~~~~r~~~~~~ 380 (481)
....|++.+.+.+..+ ...++|||+.++..+..|...|.++...++...++ ..+|+..+..++++.
T Consensus 390 ~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~ 469 (746)
T KOG0354|consen 390 PPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDK 469 (746)
T ss_pred CCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHH
Confidence 0123333443333222 45699999999999999999998543332333332 248899999999999
Q ss_pred HhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchH
Q 011605 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 381 f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 444 (481)
|++|+.+|||||++.++|+|++.++.||.|+...|+..++||.|| ||. +.|+|++++.....
T Consensus 470 Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 470 FRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEV 531 (746)
T ss_pred HhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhH
Confidence 999999999999999999999999999999999999999999999 897 57899988885433
No 69
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.5e-31 Score=281.49 Aligned_cols=324 Identities=23% Similarity=0.301 Sum_probs=222.3
Q ss_pred CCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011605 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 127 (481)
..++|+||.++...++. +++++++|||+|||+++++++...+.. .+.++||++||++|+.|+.+.+++++..
T Consensus 13 ~~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~~---~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLHK---KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHHh---CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 34899999998887764 389999999999999998887776632 3458999999999999999999988654
Q ss_pred cCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechh
Q 011605 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 128 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H 207 (481)
.+.++..++|+.+..+... ...+++|+|+||+.+...+.. ....+.++++|||||||
T Consensus 85 ~~~~v~~~~g~~~~~~r~~----------------------~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 85 PEEKIVVFTGEVSPEKRAE----------------------LWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAH 141 (773)
T ss_pred CCceEEEEeCCCCHHHHHH----------------------HHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCc
Confidence 3457777888776544322 223468999999999877655 33568889999999999
Q ss_pred HhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhc--
Q 011605 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-- 285 (481)
Q Consensus 208 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~-- 285 (481)
++........+...+... . +...++++|||+.........
T Consensus 142 ~~~~~~~~~~i~~~~~~~---~-----------------------------------~~~~il~lTaTP~~~~~~i~~~~ 183 (773)
T PRK13766 142 RAVGNYAYVYIAERYHED---A-----------------------------------KNPLVLGLTASPGSDEEKIKEVC 183 (773)
T ss_pred cccccccHHHHHHHHHhc---C-----------------------------------CCCEEEEEEcCCCCCHHHHHHHH
Confidence 875443222222222111 1 111345555555322110000
Q ss_pred --cc---------------------------------------------------ccCCceeecCCc-----cc------
Q 011605 286 --LD---------------------------------------------------LHHPLFLTTGET-----RY------ 301 (481)
Q Consensus 286 --~~---------------------------------------------------~~~~~~~~~~~~-----~~------ 301 (481)
++ +........... ..
T Consensus 184 ~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~ 263 (773)
T PRK13766 184 ENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKK 263 (773)
T ss_pred HhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHH
Confidence 00 000000000000 00
Q ss_pred ---cC-c---------------------------------------------------------------cccccccccc
Q 011605 302 ---KL-P---------------------------------------------------------------ERLESYKLIC 314 (481)
Q Consensus 302 ---~~-~---------------------------------------------------------------~~~~~~~~~~ 314 (481)
.+ . ..+.......
T Consensus 264 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 343 (773)
T PRK13766 264 LQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELD 343 (773)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcc
Confidence 00 0 0000000011
Q ss_pred CCCchHHHHHHHHHh----cCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccc--------cChHHHHHHHHHHh
Q 011605 315 ESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL--------QRQSVRSKTLKAFR 382 (481)
Q Consensus 315 ~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~--------~~~~~r~~~~~~f~ 382 (481)
....|...+.+++.. ..++++||||++...+..+++.|...+ ..+..+||. ++..+|.+++++|+
T Consensus 344 ~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~ 420 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEG---IKAVRFVGQASKDGDKGMSQKEQIEILDKFR 420 (773)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCC---CceEEEEccccccccCCCCHHHHHHHHHHHH
Confidence 223455566666644 467899999999999999999997665 566666664 88899999999999
Q ss_pred cCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchH
Q 011605 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 383 ~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 444 (481)
+|+.++||+|+++++|+|+|++++||+|+++++...|+||+||+||.+. |.+++++..+..
T Consensus 421 ~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~ 481 (773)
T PRK13766 421 AGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTR 481 (773)
T ss_pred cCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCCh
Confidence 9999999999999999999999999999999999999999999999864 788888876543
No 70
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=8.9e-32 Score=285.31 Aligned_cols=326 Identities=21% Similarity=0.284 Sum_probs=220.7
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|+ .|+++|..+++.++. |++++++||||+|||..+ +++...+.. .+.+++|++||++|+.|+.+.++.++
T Consensus 77 ~G~-~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f~-l~~~~~l~~---~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTFG-LVMSLYLAK---KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHHH-HHHHHHHHh---cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 587 899999999988876 899999999999999644 344333332 35689999999999999999999999
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhc-CCCcEEEeCchHHHHHHhcCCCcccCCccEEEEe
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvD 204 (481)
...++.+..+.|+........ ......+. .+++|+|+||+.+.+.+.. +....++++|+|
T Consensus 148 ~~~~~~~~~~~g~~~~~~~ek----------------~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~~~~~lVvD 208 (1176)
T PRK09401 148 EKVGCGVKILYYHSSLKKKEK----------------EEFLERLKEGDFDILVTTSQFLSKNFDE---LPKKKFDFVFVD 208 (1176)
T ss_pred hhcCceEEEEEccCCcchhHH----------------HHHHHHHhcCCCCEEEECHHHHHHHHHh---ccccccCEEEEE
Confidence 887888777776654311100 01111222 4589999999999987763 445679999999
Q ss_pred chhHhhHH-----------HHh-hhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeee
Q 011605 205 ETDRLLRE-----------AYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (481)
Q Consensus 205 E~H~l~~~-----------~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (481)
|||+++++ +|. +.+..++..+...... ...+.....+...- .... . ...+++++
T Consensus 209 EaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~---------~~~~~~i~~l~~~i--~~~~--~-~~~q~ilf 274 (1176)
T PRK09401 209 DVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY---------EEIYEKIRELEEKI--AELK--D-KKGVLVVS 274 (1176)
T ss_pred ChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccccccc---------chhhhHHHHHHHhh--hhcc--c-CCceEEEE
Confidence 99999863 343 4556666555321110 00000000010000 0000 0 14578999
Q ss_pred ceeeccC-chhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhh---HHHH
Q 011605 273 SATLTQD-PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES---THRL 348 (481)
Q Consensus 273 sat~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~---~~~l 348 (481)
|||..+. .... .+.....+........ ...+.+...... .+...+..++.... .++||||++... ++.+
T Consensus 275 SAT~~~~~~~~~---l~~~ll~~~v~~~~~~-~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l 347 (1176)
T PRK09401 275 SATGRPRGNRVK---LFRELLGFEVGSPVFY-LRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEEL 347 (1176)
T ss_pred eCCCCccchHHH---HhhccceEEecCcccc-cCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHH
Confidence 9999753 2221 1122222222221111 122222222222 56667777776664 689999999777 9999
Q ss_pred HHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEE----ccccccCCCCCC-CcEEEEcCCCC------Chh
Q 011605 349 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKPA------YIK 417 (481)
Q Consensus 349 ~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~----t~~l~~Gvdl~~-~~~Vi~~~~~~------s~~ 417 (481)
++.|...| +.+..+||++ ...+++|++|+.+|||+ |+.+++|+|+|+ ++.||+|+.|. ...
T Consensus 348 ~~~L~~~g---i~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~ 419 (1176)
T PRK09401 348 AEYLEDLG---INAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEEL 419 (1176)
T ss_pred HHHHHHCC---CcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccc
Confidence 99999877 8999999999 23359999999999999 689999999999 89999999997 456
Q ss_pred HHHHHhhhccc
Q 011605 418 TYIHRAGRTAR 428 (481)
Q Consensus 418 ~~~Q~~GR~~R 428 (481)
.+.+++||...
T Consensus 420 ~~~~~~~r~~~ 430 (1176)
T PRK09401 420 APPFLLLRLLS 430 (1176)
T ss_pred cCHHHHHHHHh
Confidence 78999999864
No 71
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.9e-32 Score=265.89 Aligned_cols=353 Identities=21% Similarity=0.214 Sum_probs=239.6
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|. .|++.|..++..++. |+ +..+.||+|||+++.+|++..... +..++|++||+.|+.|.++++..++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~----G~--Iae~~TGeGKTla~~lp~~~~al~----G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLS----GR--LAEMQTGEGKTLTATLPAGTAALA----GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred hCC-CCChHHHHHHHHHhC----CC--eeeeeCCCCcHHHHHHHHHHHhhc----CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 676 899999999888765 55 999999999999999998876554 4589999999999999999999999
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcCC-------------
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR------------- 191 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~~------------- 191 (481)
..+|++++++.|+.+..... ...+++|+++|...+ .+.|...-
T Consensus 169 ~~lGlsv~~i~gg~~~~~r~-----------------------~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~ 225 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDERR-----------------------AAYGADITYCTNKELVFDYLRDRLALGQRASDARLAL 225 (656)
T ss_pred hhcCCEEEEEeCCCCHHHHH-----------------------HHcCCCEEEECCCchhhhhccccccccccccchhhhh
Confidence 99999999999987643321 224679999998776 44443321
Q ss_pred -----------CcccCCccEEEEechhHhhHH------------------HHhhhHHHHHHhccccc-------------
Q 011605 192 -----------GFTLEHLCYLVVDETDRLLRE------------------AYQAWLPTVLQLTRSDN------------- 229 (481)
Q Consensus 192 -----------~~~~~~~~~iVvDE~H~l~~~------------------~~~~~~~~l~~~~~~~~------------- 229 (481)
......+.+.||||++.++=+ ........+...+....
T Consensus 226 ~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~l 305 (656)
T PRK12898 226 ESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIEL 305 (656)
T ss_pred hhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEE
Confidence 112456789999999963211 01111111111110000
Q ss_pred ---------------ccccc-------------------------------------------------ccccccccccc
Q 011605 230 ---------------ENRFS-------------------------------------------------DASTFLPSAFG 245 (481)
Q Consensus 230 ---------------~~~~~-------------------------------------------------~~~~~~~~~~~ 245 (481)
...+. ++.....++..
T Consensus 306 t~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE 385 (656)
T PRK12898 306 TEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKE 385 (656)
T ss_pred cHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhc
Confidence 00000 00000000000
Q ss_pred chh------hhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCch
Q 011605 246 SLK------TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK 319 (481)
Q Consensus 246 ~~~------~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 319 (481)
... +...-..+..+.... ++..||+|.......+...+..++..+...... ... .....+......|
T Consensus 386 ~v~i~~e~~t~a~It~q~~Fr~Y~----kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~-~~~~~v~~t~~~K 458 (656)
T PRK12898 386 GCELTDPRETLARITYQRFFRRYL----RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRR-HLPDEVFLTAAAK 458 (656)
T ss_pred CCCCCcCceeeeeehHHHHHHhhH----HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cce-ecCCEEEeCHHHH
Confidence 000 000011111111111 467899999876666666666666655544432 111 2223334455667
Q ss_pred HHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcccccc
Q 011605 320 PLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397 (481)
Q Consensus 320 ~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~ 397 (481)
...+...+... .+.++||||+++..++.+++.|.+.+ +.+..+||.++. |+..+..|+.+...|+|||+++++
T Consensus 459 ~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~g---i~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgR 533 (656)
T PRK12898 459 WAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAG---LPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGR 533 (656)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC---CCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhc
Confidence 77787777654 35689999999999999999999877 899999998765 455555566556689999999999
Q ss_pred CCCCC---CCc-----EEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchH
Q 011605 398 GMDVE---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 398 Gvdl~---~~~-----~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 444 (481)
|+||+ ++. +||+++.|.|...|.|++||+||.|..|.++.|++..|.
T Consensus 534 GtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 534 GTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred ccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 99999 555 999999999999999999999999999999999987653
No 72
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.1e-32 Score=271.68 Aligned_cols=375 Identities=20% Similarity=0.264 Sum_probs=266.6
Q ss_pred CCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc-------cCCcc
Q 011605 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------VRCLR 103 (481)
Q Consensus 31 ~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~-------~~~~~ 103 (481)
.+..+|..-+.++. |...+++.|...+..++. ...++++|||||+|||.++++.+++.+..+. ....+
T Consensus 292 ~iselP~Wnq~aF~--g~~sLNrIQS~v~daAl~---~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fK 366 (1674)
T KOG0951|consen 292 KISELPKWNQPAFF--GKQSLNRIQSKVYDAALR---GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFK 366 (1674)
T ss_pred eecCCcchhhhhcc--cchhhhHHHHHHHHHHhc---CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccce
Confidence 33356666566655 455799999999888775 3578999999999999999999999987753 23458
Q ss_pred EEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH
Q 011605 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183 (481)
Q Consensus 104 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l 183 (481)
++|++|.++|++.|...+.+.+..+|+.|...+|+......+. .+.+|++|||+..
T Consensus 367 IVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi------------------------eeTqVIV~TPEK~ 422 (1674)
T KOG0951|consen 367 IVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI------------------------EETQVIVTTPEKW 422 (1674)
T ss_pred EEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh------------------------hcceeEEeccchh
Confidence 9999999999999999999999999999999999987655533 3459999999987
Q ss_pred HHHHhcCCCc-ccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCC
Q 011605 184 MDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (481)
Q Consensus 184 ~~~l~~~~~~-~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (481)
--.-++.... ..+-++++|+||.| |+.+..+..++.+..+.......
T Consensus 423 DiITRk~gdraY~qlvrLlIIDEIH-LLhDdRGpvLESIVaRt~r~ses------------------------------- 470 (1674)
T KOG0951|consen 423 DIITRKSGDRAYEQLVRLLIIDEIH-LLHDDRGPVLESIVARTFRRSES------------------------------- 470 (1674)
T ss_pred hhhhcccCchhHHHHHHHHhhhhhh-hcccccchHHHHHHHHHHHHhhh-------------------------------
Confidence 4443432222 23347899999999 55677888888888776542211
Q ss_pred CCcceeeeeeceeeccCchhhh--cccccCCceeecCCccccCcccccccccccCCCchH------HHHHHHHHhcCCCe
Q 011605 263 PYPRLVKMVLSATLTQDPNKLA--QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP------LYLVALLQSLGEEK 334 (481)
Q Consensus 263 ~~~~~~~v~~sat~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~------~~l~~~l~~~~~~~ 334 (481)
....++.+.+|||+++-.+... ......-..+..+....++...+ .-+......+. ....++++...+++
T Consensus 471 ~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~--Igi~ek~~~~~~qamNe~~yeKVm~~agk~q 548 (1674)
T KOG0951|consen 471 TEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQY--IGITEKKPLKRFQAMNEACYEKVLEHAGKNQ 548 (1674)
T ss_pred cccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceE--eccccCCchHHHHHHHHHHHHHHHHhCCCCc
Confidence 1135578999999987655433 32322222333333322222211 11112222222 33455566667899
Q ss_pred EEEEecchhhHHHHHHHHhhcc----------------------------------ccceeEEEcccccChHHHHHHHHH
Q 011605 335 CIVFTSSVESTHRLCTLLNHFG----------------------------------ELRIKIKEYSGLQRQSVRSKTLKA 380 (481)
Q Consensus 335 ~lVf~~s~~~~~~l~~~L~~~~----------------------------------~~~~~~~~~~~~~~~~~r~~~~~~ 380 (481)
+|||+.+++++.+.|+.++... -..++++++|.||++.+|+.+.+.
T Consensus 549 VLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdL 628 (1674)
T KOG0951|consen 549 VLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDL 628 (1674)
T ss_pred EEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHH
Confidence 9999999999999998887310 034689999999999999999999
Q ss_pred HhcCCceEEEEccccccCCCCCCCcEEEE----cC------CCCChhHHHHHhhhcccCCCC--ccEEEEeecchHHHHH
Q 011605 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD------KPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFK 448 (481)
Q Consensus 381 f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~----~~------~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~ 448 (481)
|+.|+++++|+|..++.|+|+|+-.++|- |+ .+.++.+.+||.||+||.+-+ |..+++....+.-...
T Consensus 629 f~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyl 708 (1674)
T KOG0951|consen 629 FADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYL 708 (1674)
T ss_pred HhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhH
Confidence 99999999999999999999997655553 22 234688999999999998766 7777777666666666
Q ss_pred HHHHHhcCCCCCCCCCCchhhhhhhcc
Q 011605 449 KLLQKADNDSCPIHSIPSSLIESLRPV 475 (481)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (481)
+++++-. +++++++..|.|.
T Consensus 709 s~mn~qL-------piesq~~~rl~d~ 728 (1674)
T KOG0951|consen 709 SLMNQQL-------PIESQFVSRLADC 728 (1674)
T ss_pred HhhhhcC-------CChHHHHHHhhhh
Confidence 6665543 3445555444443
No 73
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.1e-31 Score=255.25 Aligned_cols=353 Identities=18% Similarity=0.216 Sum_probs=250.1
Q ss_pred HHHHHHHHCCCCccchhhHHhHHhhhCCCCCCC--CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHH
Q 011605 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 38 ~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~--~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (481)
.+.+.+..+.| +++..|.+++.+|...+.... +-++.|..|||||++++++++..+..+ .++..++||.-||+
T Consensus 251 l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G----~Q~ALMAPTEILA~ 325 (677)
T COG1200 251 LLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG----YQAALMAPTEILAE 325 (677)
T ss_pred HHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC----CeeEEeccHHHHHH
Confidence 34566677899 899999999999998776553 358999999999999999998887775 38999999999999
Q ss_pred HHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcC-CCcEEEeCchHHHHHHhcCCCcc
Q 011605 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~T~~~l~~~l~~~~~~~ 194 (481)
|.+..+.+++..+|++++.++|......+...+. .+.+ ..+|+|+|+.-+.+ ...
T Consensus 326 QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~------------------~l~~G~~~ivVGTHALiQd------~V~ 381 (677)
T COG1200 326 QHYESLRKWLEPLGIRVALLTGSLKGKARKEILE------------------QLASGEIDIVVGTHALIQD------KVE 381 (677)
T ss_pred HHHHHHHHHhhhcCCeEEEeecccchhHHHHHHH------------------HHhCCCCCEEEEcchhhhc------cee
Confidence 9999999999999999999999988766644333 2333 48999999765533 256
Q ss_pred cCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeece
Q 011605 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 274 (481)
|+++.++|+||-|++.-... ..+...... ..+.++|||
T Consensus 382 F~~LgLVIiDEQHRFGV~QR----~~L~~KG~~--------------------------------------~Ph~LvMTA 419 (677)
T COG1200 382 FHNLGLVIIDEQHRFGVHQR----LALREKGEQ--------------------------------------NPHVLVMTA 419 (677)
T ss_pred ecceeEEEEeccccccHHHH----HHHHHhCCC--------------------------------------CCcEEEEeC
Confidence 88899999999998632211 111111110 236899999
Q ss_pred eeccCchhhhcccccCCceeecCCccccCcccccc-cccccCCCchHHHHHHHHH-hc-CCCeEEEEecchhhHH-----
Q 011605 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES-YKLICESKLKPLYLVALLQ-SL-GEEKCIVFTSSVESTH----- 346 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~l~~~l~-~~-~~~~~lVf~~s~~~~~----- 346 (481)
|+-+..-........+.-++..- |..... ....... .+...+.+.++ .. +++++-|.|+-+++.+
T Consensus 420 TPIPRTLAlt~fgDldvS~IdEl------P~GRkpI~T~~i~~-~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~ 492 (677)
T COG1200 420 TPIPRTLALTAFGDLDVSIIDEL------PPGRKPITTVVIPH-ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQ 492 (677)
T ss_pred CCchHHHHHHHhccccchhhccC------CCCCCceEEEEecc-ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhh
Confidence 98655444333322222111111 111111 1222222 33333333332 22 5788999998876554
Q ss_pred ---HHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCC-ChhHHHHH
Q 011605 347 ---RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHR 422 (481)
Q Consensus 347 ---~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~-s~~~~~Q~ 422 (481)
++++.|+.. -.+.+++.+||.|+..|+++++++|++|+.+|||||...+.|||+|+++++|+.++.. ..+++.|-
T Consensus 493 ~a~~~~~~L~~~-~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQL 571 (677)
T COG1200 493 AAEELYEELKSF-LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQL 571 (677)
T ss_pred hHHHHHHHHHHH-cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHh
Confidence 555666633 2346799999999999999999999999999999999999999999999999887654 48899999
Q ss_pred hhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhh
Q 011605 423 AGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 470 (481)
Q Consensus 423 ~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (481)
.||+||.+..+.|++++.....+..++=++-+ ....+=+.+++...+
T Consensus 572 RGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im-~~t~DGF~IAE~DLk 618 (677)
T COG1200 572 RGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIM-RETTDGFVIAEEDLK 618 (677)
T ss_pred ccccCCCCcceEEEEEeCCCCChhHHHHHHHH-HhcCCcceehhhhHh
Confidence 99999999899999999887633333333333 222233555555443
No 74
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=4.4e-31 Score=263.19 Aligned_cols=365 Identities=18% Similarity=0.183 Sum_probs=226.3
Q ss_pred cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCc
Q 011605 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 130 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 130 (481)
++|+|.+++..+.- +++.++.++||+|||+++.+|++..... +..++|++|++.|+.|+.+++..++..+|+
T Consensus 69 lrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~l~aL~----g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 69 MFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLYLNALT----GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHHHHhhc----CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 34444444444332 4457999999999999999997655544 346999999999999999999999999999
Q ss_pred eEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcC-----CCcccCCccEEEEe
Q 011605 131 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLCYLVVD 204 (481)
Q Consensus 131 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~-----~~~~~~~~~~iVvD 204 (481)
++....++....... .. .+....+++|+++||+.+ .+.+... ....++.+.++|+|
T Consensus 141 sv~~~~~~s~~~~~~-----------------~~-~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVD 202 (762)
T TIGR03714 141 TVSLGVVDDPDEEYD-----------------AN-EKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVD 202 (762)
T ss_pred cEEEEECCCCccccC-----------------HH-HHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEe
Confidence 998877652211000 00 011124689999999999 4544321 12346789999999
Q ss_pred chhHhhHHH----------------HhhhHHHHHHhccccccc---------------------cccccccccccc----
Q 011605 205 ETDRLLREA----------------YQAWLPTVLQLTRSDNEN---------------------RFSDASTFLPSA---- 243 (481)
Q Consensus 205 E~H~l~~~~----------------~~~~~~~l~~~~~~~~~~---------------------~~~~~~~~~~~~---- 243 (481)
|||.++-+. .......+...+...... .+.....+-+.+
T Consensus 203 EaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~ 282 (762)
T TIGR03714 203 EVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELV 282 (762)
T ss_pred cHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHH
Confidence 999874431 112222222222111000 000000000000
Q ss_pred ------ccchhhhh-------ccc---------------------------------------------cccccCCCCCc
Q 011605 244 ------FGSLKTIR-------RCG---------------------------------------------VERGFKDKPYP 265 (481)
Q Consensus 244 ------~~~~~~~~-------~~~---------------------------------------------~~~~~~~~~~~ 265 (481)
+.+...+. .++ ++..+...
T Consensus 283 ~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y--- 359 (762)
T TIGR03714 283 RHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMF--- 359 (762)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhC---
Confidence 00000000 000 00000000
Q ss_pred ceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHh--cCCCeEEEEecchh
Q 011605 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE 343 (481)
Q Consensus 266 ~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~ 343 (481)
.++..||+|......++...+-.+...+++ ..+..... ..-.+......|...+...+.+ ..+.++||||+++.
T Consensus 360 -~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt--~kp~~r~d-~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~ 435 (762)
T TIGR03714 360 -NKLSGMTGTGKVAEKEFIETYSLSVVKIPT--NKPIIRID-YPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVE 435 (762)
T ss_pred -chhcccCCCChhHHHHHHHHhCCCEEEcCC--CCCeeeee-CCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHH
Confidence 024456666533333333222211121211 11111111 1112333445677777776654 35779999999999
Q ss_pred hHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCC---------CCcEEEEcCCCC
Q 011605 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---------GVNNVVNYDKPA 414 (481)
Q Consensus 344 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~---------~~~~Vi~~~~~~ 414 (481)
.++.++..|.+.+ +.+..+|+.++..++..+..+++.| .|+|||+++++|+|++ ++.+|++++.|.
T Consensus 436 ~se~ls~~L~~~g---i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps 510 (762)
T TIGR03714 436 MSEIYSELLLREG---IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMEN 510 (762)
T ss_pred HHHHHHHHHHHCC---CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCC
Confidence 9999999999877 8889999999998888777777666 7999999999999999 899999999997
Q ss_pred ChhHHHHHhhhcccCCCCccEEEEeecchH-------HHHHHHHHHh
Q 011605 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKA 454 (481)
Q Consensus 415 s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~~~~~~ 454 (481)
.... .|++||+||.|.+|.++.|++..|. +.+.++++.+
T Consensus 511 ~rid-~qr~GRtGRqG~~G~s~~~is~eD~l~~~~~~~~~~~~~~~~ 556 (762)
T TIGR03714 511 SRVD-LQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKY 556 (762)
T ss_pred cHHH-HHhhhcccCCCCceeEEEEEccchhhhhhcchHHHHHHHHHc
Confidence 7666 9999999999999999999987654 4555666555
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.5e-30 Score=261.90 Aligned_cols=368 Identities=18% Similarity=0.206 Sum_probs=234.2
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|. .|++.|..+...+. .+.+..+.||+|||+++.+|++..... +..++|++||+.||.|.+.++..++
T Consensus 75 ~g~-~p~~vQl~~~~~l~------~G~Iaem~TGeGKTL~a~lp~~l~al~----G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLH------EGNIAEMQTGEGKTLTATMPLYLNALE----GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHc------CCceeeecCCCcchHHHHHHHHHHHHc----CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 676 88899977765432 233999999999999999998755554 4489999999999999999999999
Q ss_pred cccCceEEEeccCcch-HHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcCC-----CcccCCc
Q 011605 126 PAVGLSVGLAVGQSSI-ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHL 198 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~~-----~~~~~~~ 198 (481)
..+|++++++.|+.+. .... ...+++|+++||..+ .+.+.... ...++.+
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~-----------------------~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~ 200 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKK-----------------------AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPL 200 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHH-----------------------HhcCCCEEEECCccccchhHHhccccchhhhccccc
Confidence 9999999999998873 3221 113479999999888 44443321 1346788
Q ss_pred cEEEEechhHhhHH----------------HHhhhHHHHHHhcccccc---------------------------ccccc
Q 011605 199 CYLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNE---------------------------NRFSD 235 (481)
Q Consensus 199 ~~iVvDE~H~l~~~----------------~~~~~~~~l~~~~~~~~~---------------------------~~~~~ 235 (481)
.++|+||+|.++=+ ........+...+..... +.+..
T Consensus 201 ~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~ 280 (790)
T PRK09200 201 NYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSL 280 (790)
T ss_pred ceEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccCh
Confidence 99999999975322 112222222222211000 00000
Q ss_pred ccccc----cccccchhhhh-------ccccccccCC---CCCc------c-----------------------------
Q 011605 236 ASTFL----PSAFGSLKTIR-------RCGVERGFKD---KPYP------R----------------------------- 266 (481)
Q Consensus 236 ~~~~~----~~~~~~~~~~~-------~~~~~~~~~~---~~~~------~----------------------------- 266 (481)
....+ ..++.+...+. .++.....+. ...+ +
T Consensus 281 ~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~f 360 (790)
T PRK09200 281 EHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLF 360 (790)
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHH
Confidence 00000 00000000000 0000000000 0000 0
Q ss_pred ---eeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhc--CCCeEEEEecc
Q 011605 267 ---LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSS 341 (481)
Q Consensus 267 ---~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s 341 (481)
.++..||+|.......+...+..+...+++ ..+....... -........|...+...+... .+.++||||++
T Consensus 361 r~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt--~kp~~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t 437 (790)
T PRK09200 361 RMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPT--NRPIIRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGS 437 (790)
T ss_pred HHhHHHhccCCCChHHHHHHHHHhCCcEEECCC--CCCcccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 014456666533222222222222222211 1111111111 122234456777777766542 57799999999
Q ss_pred hhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCC---CCCc-----EEEEcCCC
Q 011605 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV---EGVN-----NVVNYDKP 413 (481)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl---~~~~-----~Vi~~~~~ 413 (481)
++.++.++..|.+.+ +.+..+||.++..++..+..+++.| +|+|||+++++|+|+ |++. +||+++.|
T Consensus 438 ~~~se~l~~~L~~~g---i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p 512 (790)
T PRK09200 438 IEQSETFSKLLDEAG---IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERM 512 (790)
T ss_pred HHHHHHHHHHHHHCC---CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCC
Confidence 999999999999877 8999999999988888777777666 799999999999999 6888 99999999
Q ss_pred CChhHHHHHhhhcccCCCCccEEEEeecchH-------HHHHHHHHHhc
Q 011605 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKAD 455 (481)
Q Consensus 414 ~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~~~~~~~ 455 (481)
.+...|.|++||+||.|..|.++.|++..|. +.+++++..+.
T Consensus 513 ~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~~~~~~~~~~~~~~~~~ 561 (790)
T PRK09200 513 ESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLKKKLK 561 (790)
T ss_pred CCHHHHHHhhccccCCCCCeeEEEEEcchHHHHHhhccHHHHHHHHHcC
Confidence 9999999999999999999999999986544 34555655553
No 76
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=4e-31 Score=257.05 Aligned_cols=297 Identities=23% Similarity=0.275 Sum_probs=205.4
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
..+|+||.+++..+......++..++++|||+|||.+++..+.. + ..++|||+|+..|+.||.+.+......
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~- 106 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-L------KRSTLVLVPTKELLDQWAEALKKFLLL- 106 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-h------cCCEEEEECcHHHHHHHHHHHHHhcCC-
Confidence 37999999999998886655777999999999999987654443 1 224999999999999998777766532
Q ss_pred CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCC-CcEEEeCchHHHHHHhcCCCcccCCccEEEEechh
Q 011605 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H 207 (481)
+..++...|+... .. ..|.|+|++++.+.. ....+....+++|||||||
T Consensus 107 ~~~~g~~~~~~~~-----------------------------~~~~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~H 156 (442)
T COG1061 107 NDEIGIYGGGEKE-----------------------------LEPAKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVH 156 (442)
T ss_pred ccccceecCceec-----------------------------cCCCcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccc
Confidence 1133344443321 01 269999999997742 0011334479999999999
Q ss_pred HhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhccc
Q 011605 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 287 (481)
Q Consensus 208 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~ 287 (481)
++.++.+....+.+.... ..+.+|||+.......+...
T Consensus 157 h~~a~~~~~~~~~~~~~~------------------------------------------~~LGLTATp~R~D~~~~~~l 194 (442)
T COG1061 157 HLPAPSYRRILELLSAAY------------------------------------------PRLGLTATPEREDGGRIGDL 194 (442)
T ss_pred cCCcHHHHHHHHhhhccc------------------------------------------ceeeeccCceeecCCchhHH
Confidence 998877766655544332 15788888653321111110
Q ss_pred --ccCCceeecCCc------------------cccCcc---cccc--------------------cccccCCCchHHHHH
Q 011605 288 --LHHPLFLTTGET------------------RYKLPE---RLES--------------------YKLICESKLKPLYLV 324 (481)
Q Consensus 288 --~~~~~~~~~~~~------------------~~~~~~---~~~~--------------------~~~~~~~~~k~~~l~ 324 (481)
...+........ ...... .... .........+...+.
T Consensus 195 ~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (442)
T COG1061 195 FDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVR 274 (442)
T ss_pred HHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHH
Confidence 000111111100 000000 0000 011111223344445
Q ss_pred HHHHhc-CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCC
Q 011605 325 ALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403 (481)
Q Consensus 325 ~~l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~ 403 (481)
..+..+ .+.+++||+.+..++..++..+...+ . +..+.+..+..+|.++++.|+.|.+++||++.++.+|+|+|+
T Consensus 275 ~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~---~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~ 350 (442)
T COG1061 275 GLLLKHARGDKTLIFASDVEHAYEIAKLFLAPG---I-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPD 350 (442)
T ss_pred HHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC---c-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCC
Confidence 555544 46799999999999999999998655 3 778999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCChhHHHHHhhhcccC
Q 011605 404 VNNVVNYDKPAYIKTYIHRAGRTARA 429 (481)
Q Consensus 404 ~~~Vi~~~~~~s~~~~~Q~~GR~~R~ 429 (481)
++++|+.++..|+..|+||+||+.|.
T Consensus 351 ~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 351 ADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999993
No 77
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.98 E-value=2.7e-30 Score=274.48 Aligned_cols=317 Identities=20% Similarity=0.272 Sum_probs=203.1
Q ss_pred HHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHH
Q 011605 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 38 ~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (481)
++.+.+.......|+++|..+++.++. |++++++||||+|||. +.+++...+.. .+.+++|++||++|+.|+
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~-f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi 137 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTT-FGLAMSLFLAK---KGKRCYIILPTTLLVIQV 137 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeCHHHHHHHH
Confidence 344444443334899999999988886 8999999999999997 44455444433 256899999999999999
Q ss_pred HHHHHHhccccCceEE---EeccCcchHHHHHHHhhccccccCccCChhhHHHhhc-CCCcEEEeCchHHHHHHhcCCCc
Q 011605 118 KDVFAAIAPAVGLSVG---LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 118 ~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
.+.++.++...++.+. .++|+.+........ ..+. .+++|+|+||+.+.+.+....
T Consensus 138 ~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~------------------~~l~~~~~dIlV~Tp~rL~~~~~~l~-- 197 (1171)
T TIGR01054 138 AEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFM------------------ERIENGDFDILITTTMFLSKNYDELG-- 197 (1171)
T ss_pred HHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHH------------------HHHhcCCCCEEEECHHHHHHHHHHhc--
Confidence 9999999887665543 466777655442221 1222 358999999999988776521
Q ss_pred ccCCccEEEEechhHhhHH-----------HHhh-hHHHHHHhcccccccccccccccccccccchhhhhccccccccCC
Q 011605 194 TLEHLCYLVVDETDRLLRE-----------AYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~l~~~-----------~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (481)
. .++++|+||||.+++. +|.+ .++.++..+...... .......... .....
T Consensus 198 -~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~-------~~~~~~~~~~--------~~~~~ 260 (1171)
T TIGR01054 198 -P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKL-------YRALHAKKRL--------ELLEA 260 (1171)
T ss_pred -C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhcccc-------chHHHHHHHH--------HHHHh
Confidence 2 7999999999999873 3333 234433322110000 0000000000 00000
Q ss_pred CCC-cceeeeeeceee-ccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEe
Q 011605 262 KPY-PRLVKMVLSATL-TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (481)
Q Consensus 262 ~~~-~~~~~v~~sat~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~ 339 (481)
.+. .....+++|||. +...... .+.....+......... ..+.+...... .+...+..++... +.++||||
T Consensus 261 ~~~~~q~~li~~SAT~~p~~~~~~---l~r~ll~~~v~~~~~~~-r~I~~~~~~~~--~~~~~L~~ll~~l-~~~~IVFv 333 (1171)
T TIGR01054 261 IPGKKRGCLIVSSATGRPRGKRAK---LFRELLGFEVGGGSDTL-RNVVDVYVEDE--DLKETLLEIVKKL-GTGGIVYV 333 (1171)
T ss_pred hhhccCcEEEEEeCCCCccccHHH---HcccccceEecCccccc-cceEEEEEecc--cHHHHHHHHHHHc-CCCEEEEE
Confidence 000 011356789994 3332211 12222222222222111 22222222211 1234566666665 46899999
Q ss_pred cch---hhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEc----cccccCCCCCC-CcEEEEcC
Q 011605 340 SSV---ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYD 411 (481)
Q Consensus 340 ~s~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t----~~l~~Gvdl~~-~~~Vi~~~ 411 (481)
++. +.++++++.|.+.| +++..+||+++. ..++.|++|+.+||||| +.+++|+|+|+ +++||+++
T Consensus 334 ~t~~~~~~a~~l~~~L~~~g---~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~ 406 (1171)
T TIGR01054 334 SIDYGKEKAEEIAEFLENHG---VKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLG 406 (1171)
T ss_pred eccccHHHHHHHHHHHHhCC---ceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEEC
Confidence 998 99999999999876 899999999963 68999999999999994 89999999999 89999977
Q ss_pred CC
Q 011605 412 KP 413 (481)
Q Consensus 412 ~~ 413 (481)
.|
T Consensus 407 ~P 408 (1171)
T TIGR01054 407 VP 408 (1171)
T ss_pred CC
Confidence 66
No 78
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.98 E-value=1.7e-30 Score=246.68 Aligned_cols=315 Identities=17% Similarity=0.147 Sum_probs=192.3
Q ss_pred hhHHhHHhhhCCCCCCC--CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc---
Q 011605 54 VQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV--- 128 (481)
Q Consensus 54 ~Q~~~~~~~~~~~~~~~--~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--- 128 (481)
+|.++++.+.+ +. ++++++|||+|||.+++++++. ...++++++|+++|++|+.+.+++++..+
T Consensus 1 hQ~~~~~~~~~----~~~~~~~i~apTGsGKT~~~~~~~l~-------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQS----KDADIIFNTAPTGAGKTLAWLTPLLH-------GENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHc----CCCCEEEEECCCCCCHHHHHHHHHHH-------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 68999998776 43 4788999999999999888774 13378999999999999999999887433
Q ss_pred -CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHH-hhcCCCcEEEeCchHHHHHHhcCCCc-------ccCCcc
Q 011605 129 -GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ-ELQSAVDILVATPGRLMDHINATRGF-------TLEHLC 199 (481)
Q Consensus 129 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Ili~T~~~l~~~l~~~~~~-------~~~~~~ 199 (481)
+..+..+.|....+.+... ........+... .....+ .....+.|++|||+.+..++...... .+.+++
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~-~~~~~~~~g~~~-~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~ 147 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYA-NDKVGSSKGEKL-YNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFS 147 (357)
T ss_pred CCceEEEecCCchHHHHHhh-hhhcccCccchh-hhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCC
Confidence 5667777776332211100 000000000000 000111 11346899999999997766442111 257899
Q ss_pred EEEEechhHhhHHHHhhhH--HHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeec
Q 011605 200 YLVVDETDRLLREAYQAWL--PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277 (481)
Q Consensus 200 ~iVvDE~H~l~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~ 277 (481)
++||||+|.+..+.....+ ......+... ....+++++|||++
T Consensus 148 ~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~-----------------------------------~~~~~~i~lSAT~~ 192 (357)
T TIGR03158 148 TVIFDEFHLYDAKQLVGMLFLLAYMQLIRFF-----------------------------------ECRRKFVFLSATPD 192 (357)
T ss_pred EEEEecccccCcccchhhhhhhHHHHHHHhh-----------------------------------hcCCcEEEEecCCC
Confidence 9999999986533221111 0111111000 01237999999997
Q ss_pred cCchhhhccc--ccCCceeecCC--cc---c----c--------CcccccccccccCCCchHHHHHH-------HHHhcC
Q 011605 278 QDPNKLAQLD--LHHPLFLTTGE--TR---Y----K--------LPERLESYKLICESKLKPLYLVA-------LLQSLG 331 (481)
Q Consensus 278 ~~~~~~~~~~--~~~~~~~~~~~--~~---~----~--------~~~~~~~~~~~~~~~~k~~~l~~-------~l~~~~ 331 (481)
+......... +..+....... .. + . ....++..... ....+...+.. .+++..
T Consensus 193 ~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~ 271 (357)
T TIGR03158 193 PALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLP 271 (357)
T ss_pred HHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccC
Confidence 6644443322 22232221111 00 0 0 00011111111 22223222222 222235
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~ 411 (481)
++++||||++++.++.+++.|++.+ .+..+..+||.++..+|.+. ++.+|||||+++++|+|++.. .|| ++
T Consensus 272 ~~k~LIf~nt~~~~~~l~~~L~~~~-~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~ 342 (357)
T TIGR03158 272 GERGAIILDSLDEVNRLSDLLQQQG-LGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS 342 (357)
T ss_pred CCeEEEEECCHHHHHHHHHHHhhhC-CCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC
Confidence 6799999999999999999998753 12467789999999887643 478999999999999999976 555 44
Q ss_pred CCCChhHHHHHhhhcc
Q 011605 412 KPAYIKTYIHRAGRTA 427 (481)
Q Consensus 412 ~~~s~~~~~Q~~GR~~ 427 (481)
|.+..+|+||+||+|
T Consensus 343 -p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 343 -ARDAAAFWQRLGRLG 357 (357)
T ss_pred -CCCHHHHhhhcccCC
Confidence 788999999999986
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.98 E-value=1.2e-29 Score=251.46 Aligned_cols=367 Identities=18% Similarity=0.175 Sum_probs=233.7
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|. .|++.|......+ .++.+..++||+|||+++.+|++-....+ ..+.|++||..||.|.++++..++
T Consensus 53 lg~-~p~~vQlig~~~l------~~G~Iaem~TGeGKTLva~lpa~l~aL~G----~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIAL------HKGKIAEMKTGEGKTLTATLPAYLNALTG----KGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhh------cCCceeeecCCCccHHHHHHHHHHHHHhC----CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 676 7888886665432 34459999999999999999885444443 369999999999999999999999
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcCC-----CcccCCcc
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~~-----~~~~~~~~ 199 (481)
..+|++++++.|+.+...+... -.++|+++||..| .+++.... ...++.+.
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~-----------------------y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~ 178 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREA-----------------------YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFH 178 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHh-----------------------cCCCEEEECCCchhhHHHhcccccchhhhhccccc
Confidence 9999999999998875444222 2369999999999 77776642 23578899
Q ss_pred EEEEechhHhhHHHHhhh----------------HHHHHHhccccccccc----------cc-ccccc------cccccc
Q 011605 200 YLVVDETDRLLREAYQAW----------------LPTVLQLTRSDNENRF----------SD-ASTFL------PSAFGS 246 (481)
Q Consensus 200 ~iVvDE~H~l~~~~~~~~----------------~~~l~~~~~~~~~~~~----------~~-~~~~~------~~~~~~ 246 (481)
++|+||+|.++-+..+.. ...+...+... .+.. .+ +.... ...+..
T Consensus 179 ~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~-~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~ 257 (745)
T TIGR00963 179 FAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKE-VHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDL 257 (745)
T ss_pred eeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccC-CCeEEecCCCceeECHHHHHHHHHHcCCccccCh
Confidence 999999998755321110 11111111100 0000 00 00000 000000
Q ss_pred ---------------hhhhh-------ccccccccCC---CCCc------c-----------------------------
Q 011605 247 ---------------LKTIR-------RCGVERGFKD---KPYP------R----------------------------- 266 (481)
Q Consensus 247 ---------------~~~~~-------~~~~~~~~~~---~~~~------~----------------------------- 266 (481)
...+. .++.....+. ...+ +
T Consensus 258 ~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~F 337 (745)
T TIGR00963 258 ENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFF 337 (745)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHH
Confidence 00000 0000000000 0000 0
Q ss_pred ---eeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHH-h-cCCCeEEEEecc
Q 011605 267 ---LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-S-LGEEKCIVFTSS 341 (481)
Q Consensus 267 ---~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~-~~~~~~lVf~~s 341 (481)
.++..||+|.......+...+..+...+++... ....... -.+......|...+.+.+. . ..+.++||||++
T Consensus 338 r~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp--~~R~d~~-d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~s 414 (745)
T TIGR00963 338 RLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRP--VIRKDLS-DLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTS 414 (745)
T ss_pred hhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCCCC--eeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 013345555433222222222222222221111 1111111 1122233445555555442 2 257899999999
Q ss_pred hhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCC-------CcEEEEcCCCC
Q 011605 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG-------VNNVVNYDKPA 414 (481)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~-------~~~Vi~~~~~~ 414 (481)
+..++.+++.|.+.+ +.+..+|+. ..+|+..+.+|+.+...|+|||+++++|+|++. .-+||+++.|.
T Consensus 415 i~~se~ls~~L~~~g---i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~ 489 (745)
T TIGR00963 415 VEKSELLSNLLKERG---IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHE 489 (745)
T ss_pred HHHHHHHHHHHHHcC---CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCC
Confidence 999999999999877 788889998 668999999999999999999999999999997 45999999999
Q ss_pred ChhHHHHHhhhcccCCCCccEEEEeecchH-------HHHHHHHHHhc
Q 011605 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKAD 455 (481)
Q Consensus 415 s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~~~~~~~ 455 (481)
|...+.|+.||+||.|.+|.+..|++..|. +.+.++++.+.
T Consensus 490 s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~~~~~~~~~~~~~~~~~ 537 (745)
T TIGR00963 490 SRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLG 537 (745)
T ss_pred cHHHHHHHhccccCCCCCcceEEEEeccHHHHHhhhhHHHHHHHHHcC
Confidence 999999999999999999999999998754 34555655553
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=3.8e-30 Score=265.50 Aligned_cols=135 Identities=21% Similarity=0.222 Sum_probs=118.5
Q ss_pred CchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHh-hccccceeEEEcccccChHHHHHHHHHHhcC--CceEEEEcc
Q 011605 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLVSSD 393 (481)
Q Consensus 317 ~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~iLv~t~ 393 (481)
+.|...+.++++....+|+||||++...+..+++.|+ ..| +.+..+||+|+..+|.+.++.|+++ ..+|||||.
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~G---i~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd 554 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREG---IRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE 554 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccC---eeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech
Confidence 4577778888888778999999999999999999995 445 8899999999999999999999974 699999999
Q ss_pred ccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHh
Q 011605 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (481)
Q Consensus 394 ~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (481)
+.++|+|++.+++||+|++|+++..|.||+||++|.|+.+.+.+++........+.+.+.+
T Consensus 555 vgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~ 615 (956)
T PRK04914 555 IGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWY 615 (956)
T ss_pred hhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888877665554555555554
No 81
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=230.30 Aligned_cols=341 Identities=19% Similarity=0.263 Sum_probs=248.8
Q ss_pred CCHHHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 35 l~~~l~~~~~~-~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
++.+..++|++ +....+||.|..++...+. +.++++.+|||.||+++|.+|++- .+.-+|+++|...|
T Consensus 78 ws~e~~~ilk~~f~lekfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlpal~-------adg~alvi~plisl 146 (695)
T KOG0353|consen 78 WSDEAKDILKEQFHLEKFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLPALC-------ADGFALVICPLISL 146 (695)
T ss_pred CchHHHHHHHHHhhHHhcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhhHHh-------cCCceEeechhHHH
Confidence 78888888885 6778999999999888776 999999999999999999999874 23469999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHH------HH
Q 011605 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD------HI 187 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~------~l 187 (481)
.+++.-.++.+ |+....+...++.++...-.. ......+...++..||+.+.. .+
T Consensus 147 medqil~lkql----gi~as~lnansske~~k~v~~---------------~i~nkdse~kliyvtpekiaksk~~mnkl 207 (695)
T KOG0353|consen 147 MEDQILQLKQL----GIDASMLNANSSKEEAKRVEA---------------AITNKDSEFKLIYVTPEKIAKSKKFMNKL 207 (695)
T ss_pred HHHHHHHHHHh----CcchhhccCcccHHHHHHHHH---------------HHcCCCceeEEEEecHHHHHHHHHHHHHH
Confidence 99888888877 777767777766654432111 011122456899999998743 33
Q ss_pred hcCCCcccCCccEEEEechhHhhHHHH--hhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCc
Q 011605 188 NATRGFTLEHLCYLVVDETDRLLREAY--QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (481)
Q Consensus 188 ~~~~~~~~~~~~~iVvDE~H~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (481)
++ .+....+.+|-+||+|+...|+. +..+..+--+-+ .++
T Consensus 208 ek--a~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkr------------------------------------qf~ 249 (695)
T KOG0353|consen 208 EK--ALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKR------------------------------------QFK 249 (695)
T ss_pred HH--HhhcceeEEEeecceeehhhhCcccCcchHHHHHHHH------------------------------------hCC
Confidence 33 23456789999999999877753 222222211111 125
Q ss_pred ceeeeeeceeeccCchhhhccccc--CCceeecCCccccCcccccccccccCCCchHHHHHHHHH----hcCCCeEEEEe
Q 011605 266 RLVKMVLSATLTQDPNKLAQLDLH--HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ----SLGEEKCIVFT 339 (481)
Q Consensus 266 ~~~~v~~sat~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~----~~~~~~~lVf~ 339 (481)
..+++.++||.+..........+. ..+.+..+..++.+ .|.+..........+.++.. ...+...+|||
T Consensus 250 ~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl-----~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc 324 (695)
T KOG0353|consen 250 GAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNL-----KYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYC 324 (695)
T ss_pred CCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCc-----eeEeeeCCCChHHHHHHHHHHhccccCCCcceEEE
Confidence 667899999987665443332211 11222222222222 12222233333333333332 33567899999
Q ss_pred cchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHH
Q 011605 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (481)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~ 419 (481)
-+.++|++++..|+.+| +.+..+|..+...+|.-.-+.+..|+++|+|+|-++++|+|-|++++|||.++|.|..+|
T Consensus 325 ~sq~d~ekva~alkn~g---i~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksieny 401 (695)
T KOG0353|consen 325 FSQKDCEKVAKALKNHG---IHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENY 401 (695)
T ss_pred eccccHHHHHHHHHhcC---ccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHH
Confidence 99999999999999888 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-------------------------------------------HhhhcccCCCCccEEEEeecchHHHHHHHH
Q 011605 420 IH-------------------------------------------RAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451 (481)
Q Consensus 420 ~Q-------------------------------------------~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 451 (481)
.| -.||+||.+.+..|++||--.|.-++.+++
T Consensus 402 yqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssmv 476 (695)
T KOG0353|consen 402 YQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMV 476 (695)
T ss_pred HHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHHH
Confidence 99 679999999999999998776654444433
No 82
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=9e-29 Score=253.79 Aligned_cols=383 Identities=19% Similarity=0.198 Sum_probs=228.0
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
..|+++|..+... . ....-+++.+|||+|||.+++.++...+..+ ...+++|..||.++++++++.+.+++...
T Consensus 285 ~~p~p~Q~~~~~~-~---~~pgl~ileApTGsGKTEAAL~~A~~l~~~~--~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 285 YQPRQLQTLVDAL-P---LQPGLTIIEAPTGSGKTEAALAYAWRLIDQG--LADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCChHHHHHHHhh-c---cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 4899999876332 1 1245589999999999999877666444333 23489999999999999999988755432
Q ss_pred --CceEEEeccCcchHHHHHHHhhccccccCccCChh-hHHHhhc------CCCcEEEeCchHHHHHHhcCCCcccCCc-
Q 011605 129 --GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE-DVLQELQ------SAVDILVATPGRLMDHINATRGFTLEHL- 198 (481)
Q Consensus 129 --~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~Ili~T~~~l~~~l~~~~~~~~~~~- 198 (481)
..++...+|..........+.... .......+.. ....++. --..|+|||.+.++......+...+..+
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRA-ATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhccc-ccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 356777888776543322222110 0000000000 0001111 1268999999998765544333323333
Q ss_pred ---cEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeecee
Q 011605 199 ---CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (481)
Q Consensus 199 ---~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat 275 (481)
++|||||+|.+ +......+..++..... ...++|++|||
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~-------------------------------------~g~~vIllSAT 479 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ-------------------------------------AGGSVILLSAT 479 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHh-------------------------------------cCCcEEEEeCC
Confidence 48999999976 33344555555554432 12368999999
Q ss_pred eccCchhhh-cccccC---------CceeecCC---ccccCc------cccccccc--c--cCCCchHHHHHHHHHh-cC
Q 011605 276 LTQDPNKLA-QLDLHH---------PLFLTTGE---TRYKLP------ERLESYKL--I--CESKLKPLYLVALLQS-LG 331 (481)
Q Consensus 276 ~~~~~~~~~-~~~~~~---------~~~~~~~~---~~~~~~------~~~~~~~~--~--~~~~~k~~~l~~~l~~-~~ 331 (481)
++......+ ..+-.. |.+..... ...... ........ . .........+..+++. ..
T Consensus 480 LP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~ 559 (878)
T PRK09694 480 LPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANA 559 (878)
T ss_pred CCHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhc
Confidence 986654322 111000 11000000 000000 00000000 0 0011122333344433 24
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHH----HHHHHH-hcCC---ceEEEEccccccCCCCCC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS----KTLKAF-REGK---IQVLVSSDAMTRGMDVEG 403 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~----~~~~~f-~~g~---~~iLv~t~~l~~Gvdl~~ 403 (481)
+++++||||+++.++++++.|++.+.....+..+|+.+...+|. ++++.| ++|+ ..|||+|++++.|+|+ +
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d 638 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-D 638 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-C
Confidence 67899999999999999999987643345789999999998884 567778 5565 4799999999999999 4
Q ss_pred CcEEEEcCCCCChhHHHHHhhhcccCCCC----c----cEEEEeec-----------chHHHHHHHHHHhcCCCCCCCCC
Q 011605 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQL----G----RCFTLLHK-----------DEVKRFKKLLQKADNDSCPIHSI 464 (481)
Q Consensus 404 ~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~----g----~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 464 (481)
++++|....| .+.++||+||++|.++. | .++++... .+...+....+.+.........+
T Consensus 639 ~DvlItdlaP--idsLiQRaGR~~R~~~~~rp~~~~~p~~~V~~p~~~~~~~~~~VY~~~~~L~rT~~~L~~~~~~~~~~ 716 (878)
T PRK09694 639 FDWLITQLCP--VDLLFQRLGRLHRHHRKYRPAGFEIPVATVLLPDGEGYGRSGYIYGNTRVLWRTEQLLEEHNAASLFF 716 (878)
T ss_pred CCeEEECCCC--HHHHHHHHhccCCCCCCCCCCCCcCceEEEEeccccccCCceeecCchHHHHHHHHHHHhcCCCCcCC
Confidence 7888887766 78999999999998752 2 23333111 12224444444444443334567
Q ss_pred CchhhhhhhccccCC
Q 011605 465 PSSLIESLRPVYKSG 479 (481)
Q Consensus 465 ~~~~~~~~~~~~~~~ 479 (481)
|+++-...-.+|+..
T Consensus 717 P~~~~~lve~vY~~~ 731 (878)
T PRK09694 717 PDAYREWIESVYDEA 731 (878)
T ss_pred hHHHHHHHHHHhCCC
Confidence 877666666666544
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=6.4e-28 Score=246.00 Aligned_cols=322 Identities=21% Similarity=0.243 Sum_probs=208.9
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (481)
.+++.|.+++..+.... ...++++.++||+|||.+++.++...+.. +.++||++|+++|+.|+.+.+++.+ +
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~----g~~vLvLvPt~~L~~Q~~~~l~~~f---g 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ----GKQALVLVPEIALTPQMLARFRARF---G 215 (679)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---C
Confidence 68999999999987643 34679999999999999998777666554 3479999999999999999988754 6
Q ss_pred ceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhh-cCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 130 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
..+..++|+.+..+.... |..+ ...++|+|+|+..+. ..++++++||+||+|.
T Consensus 216 ~~v~~~~s~~s~~~r~~~------------------~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~ 269 (679)
T PRK05580 216 APVAVLHSGLSDGERLDE------------------WRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHD 269 (679)
T ss_pred CCEEEEECCCCHHHHHHH------------------HHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCc
Confidence 788888888766554322 2222 345799999997653 3467899999999996
Q ss_pred hhHHHHh---hhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhc
Q 011605 209 LLREAYQ---AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (481)
Q Consensus 209 l~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~ 285 (481)
..-.... -+...+...... ..+.+++++|||+.........
T Consensus 270 ~s~~~~~~p~y~~r~va~~ra~------------------------------------~~~~~~il~SATps~~s~~~~~ 313 (679)
T PRK05580 270 SSYKQQEGPRYHARDLAVVRAK------------------------------------LENIPVVLGSATPSLESLANAQ 313 (679)
T ss_pred cccccCcCCCCcHHHHHHHHhh------------------------------------ccCCCEEEEcCCCCHHHHHHHh
Confidence 4322110 001111110000 1345789999998754443332
Q ss_pred ccccCCceeecCCccccCccccccccc----cc-CCCchHHHHHHHHHh-c-CCCeEEEEecch----------------
Q 011605 286 LDLHHPLFLTTGETRYKLPERLESYKL----IC-ESKLKPLYLVALLQS-L-GEEKCIVFTSSV---------------- 342 (481)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~k~~~l~~~l~~-~-~~~~~lVf~~s~---------------- 342 (481)
.+................+.. ..... .. ....-...+.+.+++ . .++++|||++.+
T Consensus 314 ~g~~~~~~l~~r~~~~~~p~v-~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~ 392 (679)
T PRK05580 314 QGRYRLLRLTKRAGGARLPEV-EIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAE 392 (679)
T ss_pred ccceeEEEeccccccCCCCeE-EEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccC
Confidence 221111111111111111110 00000 00 000111223333332 2 356888887752
Q ss_pred --------------------------------------------hhHHHHHHHHhhccccceeEEEcccccC--hHHHHH
Q 011605 343 --------------------------------------------ESTHRLCTLLNHFGELRIKIKEYSGLQR--QSVRSK 376 (481)
Q Consensus 343 --------------------------------------------~~~~~l~~~L~~~~~~~~~~~~~~~~~~--~~~r~~ 376 (481)
.-++++++.|++..+ +.++..+|+++. ..+++.
T Consensus 393 C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp-~~~v~~~~~d~~~~~~~~~~ 471 (679)
T PRK05580 393 CPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFP-EARILRIDRDTTRRKGALEQ 471 (679)
T ss_pred CCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCC-CCcEEEEeccccccchhHHH
Confidence 134566666665421 257788898885 457899
Q ss_pred HHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCC--CC----------hhHHHHHhhhcccCCCCccEEEEeecch
Q 011605 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--AY----------IKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (481)
Q Consensus 377 ~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~--~s----------~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 443 (481)
+++.|++|+.+|||+|++++.|+|+|+++.|+.++.. .+ ...|.|++||+||.+..|.+++.....+
T Consensus 472 ~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 472 LLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred HHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 9999999999999999999999999999998765543 22 3578999999999998999998776543
No 84
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.96 E-value=9.9e-29 Score=222.53 Aligned_cols=301 Identities=24% Similarity=0.336 Sum_probs=220.3
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhcccc---CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEE
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAV---GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 176 (481)
+.+.++|+-|+++|++|....++++-... .++..+..|+...+.+..+ +..+.+|+
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~q---------------------l~~g~~iv 343 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQ---------------------LKDGTHIV 343 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHH---------------------hhcCceee
Confidence 45789999999999999999887774332 2333355555555544443 34678999
Q ss_pred EeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccc
Q 011605 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (481)
Q Consensus 177 i~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (481)
++||.++...+.++. +.++...++++||++.++..++.+.+..+...++....+
T Consensus 344 vGtpgRl~~~is~g~-~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsd------------------------- 397 (725)
T KOG0349|consen 344 VGTPGRLLQPISKGL-VTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSD------------------------- 397 (725)
T ss_pred ecCchhhhhhhhccc-eeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcC-------------------------
Confidence 999999999887743 568889999999999999999999998888877665433
Q ss_pred cccCCCCCcceeeeeeceeeccCc-hhhhcccccCCceeecCCccccCccccccccc-----------------------
Q 011605 257 RGFKDKPYPRLVKMVLSATLTQDP-NKLAQLDLHHPLFLTTGETRYKLPERLESYKL----------------------- 312 (481)
Q Consensus 257 ~~~~~~~~~~~~~v~~sat~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 312 (481)
..+++.+++|||+.-.. .......+.-|.-+....+. ..++..+++..
T Consensus 398 -------g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh 469 (725)
T KOG0349|consen 398 -------GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVH 469 (725)
T ss_pred -------CcccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccceeecCCccCccHHHHhhhhccCCcc
Confidence 13557888999886321 11221222222211111111 11111111100
Q ss_pred -------ccCCCc---------hHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHH
Q 011605 313 -------ICESKL---------KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376 (481)
Q Consensus 313 -------~~~~~~---------k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~ 376 (481)
...+.+ |.+.-...++++.-.++||||.+..+|..+.+++.+.+..-+.+.++||.....||.+
T Consensus 470 ~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~ 549 (725)
T KOG0349|consen 470 TKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKA 549 (725)
T ss_pred cccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHH
Confidence 000111 1122233345556789999999999999999999998877788999999999999999
Q ss_pred HHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhc
Q 011605 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 377 ~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
-++.|++++.++||||+...+|+|+.++..+|+..+|....+|.+|+||+||..+-|.++.++-....+.+.+.++.-.
T Consensus 550 nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srg 628 (725)
T KOG0349|consen 550 NLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRG 628 (725)
T ss_pred HHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999988777777777766553
No 85
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.2e-28 Score=214.41 Aligned_cols=329 Identities=21% Similarity=0.211 Sum_probs=227.9
Q ss_pred HHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHH
Q 011605 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (481)
Q Consensus 42 ~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (481)
.|.+-| ++++.|..+-..++..+....+.+++|-||+|||.+..-.+...+.+ |.++.+.+|....+-+.+..+
T Consensus 91 ~L~W~G--~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~----G~~vciASPRvDVclEl~~Rl 164 (441)
T COG4098 91 VLQWKG--TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ----GGRVCIASPRVDVCLELYPRL 164 (441)
T ss_pred eeeecc--ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc----CCeEEEecCcccchHHHHHHH
Confidence 344555 89999999988888888778999999999999998754444443333 448999999999999999888
Q ss_pred HHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEE
Q 011605 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201 (481)
Q Consensus 122 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~i 201 (481)
+..+. +..+..++|+++.... ..++|+|...+++.... |+++
T Consensus 165 k~aF~--~~~I~~Lyg~S~~~fr----------------------------~plvVaTtHQLlrFk~a--------FD~l 206 (441)
T COG4098 165 KQAFS--NCDIDLLYGDSDSYFR----------------------------APLVVATTHQLLRFKQA--------FDLL 206 (441)
T ss_pred HHhhc--cCCeeeEecCCchhcc----------------------------ccEEEEehHHHHHHHhh--------ccEE
Confidence 88766 4667778887753222 37889998888887654 8999
Q ss_pred EEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCch
Q 011605 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281 (481)
Q Consensus 202 VvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~ 281 (481)
|+||++.+.-. ....+....+.-++ .....+.+|||+++...
T Consensus 207 iIDEVDAFP~~-~d~~L~~Av~~ark-------------------------------------~~g~~IylTATp~k~l~ 248 (441)
T COG4098 207 IIDEVDAFPFS-DDQSLQYAVKKARK-------------------------------------KEGATIYLTATPTKKLE 248 (441)
T ss_pred EEecccccccc-CCHHHHHHHHHhhc-------------------------------------ccCceEEEecCChHHHH
Confidence 99999976311 12222333222222 22257899999987766
Q ss_pred hhhcccccCCceeecCCccccCcccccccccccCCCchH------HHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHh
Q 011605 282 KLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP------LYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLN 353 (481)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~------~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~ 353 (481)
..+...-...+.+.......++ .+..+.+..+-..+. ..+..+++++ .+.+++||++++...++++..|+
T Consensus 249 r~~~~g~~~~~klp~RfH~~pL--pvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk 326 (441)
T COG4098 249 RKILKGNLRILKLPARFHGKPL--PVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALK 326 (441)
T ss_pred HHhhhCCeeEeecchhhcCCCC--CCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHH
Confidence 6554443333333333333333 223333333322222 3566666665 35789999999999999999995
Q ss_pred hccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCC--CChhHHHHHhhhcccCCC
Q 011605 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--AYIKTYIHRAGRTARAGQ 431 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~--~s~~~~~Q~~GR~~R~~~ 431 (481)
+.-+ ...++.+|+... .|.+.+++|++|+..+|++|.++++|+.+|++++.|.-... .+-+.++|..||+||.-.
T Consensus 327 ~~~~-~~~i~~Vhs~d~--~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~ 403 (441)
T COG4098 327 KKLP-KETIASVHSEDQ--HRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLE 403 (441)
T ss_pred hhCC-ccceeeeeccCc--cHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCc
Confidence 4321 234567777644 49999999999999999999999999999999987765444 567889999999999543
Q ss_pred --CccEEEEeecch--HHHHHHHHHHhcCC
Q 011605 432 --LGRCFTLLHKDE--VKRFKKLLQKADND 457 (481)
Q Consensus 432 --~g~~~~~~~~~~--~~~~~~~~~~~~~~ 457 (481)
+|.++.|-.... .....+-++++++.
T Consensus 404 ~PtGdv~FFH~G~skaM~~A~keIk~MN~l 433 (441)
T COG4098 404 RPTGDVLFFHYGKSKAMKQARKEIKEMNKL 433 (441)
T ss_pred CCCCcEEEEeccchHHHHHHHHHHHHHHHH
Confidence 377777766543 33445555555543
No 86
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.9e-27 Score=241.75 Aligned_cols=329 Identities=19% Similarity=0.205 Sum_probs=247.7
Q ss_pred CHHHHHHHH-HCCCCccchhhHHhHHhhhCCCCCCC--CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHH
Q 011605 36 DPRLKVALQ-NMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 36 ~~~l~~~~~-~~~~~~~~~~Q~~~~~~~~~~~~~~~--~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (481)
+.+....+. .|+| .-++-|..|+.++...+..++ |-++||..|.|||.+++-++...+..+ .+|.+++||.-
T Consensus 580 d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G----KQVAvLVPTTl 654 (1139)
T COG1197 580 DTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG----KQVAVLVPTTL 654 (1139)
T ss_pred ChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC----CeEEEEcccHH
Confidence 344445555 4788 789999999999998887665 469999999999999988777666665 48999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCC
Q 011605 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (481)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~ 192 (481)
|++|.++.+++.+..+++++..+..-.+..+....+. .......||+|+|+.-| . ..
T Consensus 655 LA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~-----------------~la~G~vDIvIGTHrLL----~--kd 711 (1139)
T COG1197 655 LAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILK-----------------GLAEGKVDIVIGTHRLL----S--KD 711 (1139)
T ss_pred hHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHH-----------------HHhcCCccEEEechHhh----C--CC
Confidence 9999999999999999999999888776655533322 12234589999996433 2 34
Q ss_pred cccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeee
Q 011605 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (481)
Q Consensus 193 ~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (481)
+.+.++.++||||-|++.=. ..+.+..+- ..+.++.+
T Consensus 712 v~FkdLGLlIIDEEqRFGVk-~KEkLK~Lr------------------------------------------~~VDvLTL 748 (1139)
T COG1197 712 VKFKDLGLLIIDEEQRFGVK-HKEKLKELR------------------------------------------ANVDVLTL 748 (1139)
T ss_pred cEEecCCeEEEechhhcCcc-HHHHHHHHh------------------------------------------ccCcEEEe
Confidence 67899999999999986321 223333332 23468899
Q ss_pred ceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhc-CCCeEEEEecchhhHHHHHHH
Q 011605 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTL 351 (481)
Q Consensus 273 sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~ 351 (481)
|||+-+..-...-.++++.-++...... +......+.+.+. ...-.+++++. .++++-..+|.++..+++++.
T Consensus 749 SATPIPRTL~Msm~GiRdlSvI~TPP~~-----R~pV~T~V~~~d~-~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~ 822 (1139)
T COG1197 749 SATPIPRTLNMSLSGIRDLSVIATPPED-----RLPVKTFVSEYDD-LLIREAILRELLRGGQVFYVHNRVESIEKKAER 822 (1139)
T ss_pred eCCCCcchHHHHHhcchhhhhccCCCCC-----CcceEEEEecCCh-HHHHHHHHHHHhcCCEEEEEecchhhHHHHHHH
Confidence 9999887777666666665544443322 1111112222221 11122333333 688999999999999999999
Q ss_pred HhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCC-ChhHHHHHhhhcccCC
Q 011605 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAG 430 (481)
Q Consensus 352 L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~-s~~~~~Q~~GR~~R~~ 430 (481)
|+++=+ ...+++.||.|+..+-+.++..|-+|+.+|||||.+.+.|+|+|+++.+|+.+... ..+++.|..||+||-+
T Consensus 823 L~~LVP-EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~ 901 (1139)
T COG1197 823 LRELVP-EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN 901 (1139)
T ss_pred HHHhCC-ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc
Confidence 998743 25689999999999999999999999999999999999999999999988776553 4889999999999999
Q ss_pred CCccEEEEeecc
Q 011605 431 QLGRCFTLLHKD 442 (481)
Q Consensus 431 ~~g~~~~~~~~~ 442 (481)
+.++||.++.+.
T Consensus 902 ~~AYAYfl~p~~ 913 (1139)
T COG1197 902 KQAYAYFLYPPQ 913 (1139)
T ss_pred ceEEEEEeecCc
Confidence 999999999863
No 87
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=3.1e-28 Score=256.99 Aligned_cols=332 Identities=19% Similarity=0.181 Sum_probs=197.7
Q ss_pred CccchhhHHhHHhhhCCCCCC-CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~-~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 127 (481)
..+|+||.+|+..+...+..+ ++++++++||+|||++++..+ ..+... ....++||++|+.+|+.|+...+..+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~-~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKA-KRFRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhc-CccCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 369999999998887665444 569999999999999865544 344332 23458999999999999999999887322
Q ss_pred cCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcC----CCcccCCccEEEE
Q 011605 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVV 203 (481)
Q Consensus 128 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~----~~~~~~~~~~iVv 203 (481)
.+.......+....... .......|+|+|++++.+.+... ....+..+++||+
T Consensus 490 ~~~~~~~i~~i~~L~~~-----------------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIi 546 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDK-----------------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIV 546 (1123)
T ss_pred cccchhhhhchhhhhhh-----------------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEE
Confidence 11111111110000000 01134589999999998765321 1135678999999
Q ss_pred echhHhhHH---------HH------hhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCccee
Q 011605 204 DETDRLLRE---------AY------QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (481)
Q Consensus 204 DE~H~l~~~---------~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (481)
||||+.... ++ ...+..++... ...
T Consensus 547 DEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF----------------------------------------dA~ 586 (1123)
T PRK11448 547 DEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF----------------------------------------DAV 586 (1123)
T ss_pred ECCCCCCccccccccchhccchhhhHHHHHHHHHhhc----------------------------------------Ccc
Confidence 999984310 00 11222222211 123
Q ss_pred eeeeceeeccCchhhhcc--------------ccc---CCceeecCCccc----cCcccccccc----cc----cCC---
Q 011605 269 KMVLSATLTQDPNKLAQL--------------DLH---HPLFLTTGETRY----KLPERLESYK----LI----CES--- 316 (481)
Q Consensus 269 ~v~~sat~~~~~~~~~~~--------------~~~---~~~~~~~~~~~~----~~~~~~~~~~----~~----~~~--- 316 (481)
.+.+||||.......... ++. .|..+....... ...+....+. .. ...
T Consensus 587 ~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~ 666 (1123)
T PRK11448 587 KIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVD 666 (1123)
T ss_pred EEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHh
Confidence 567777765432211110 010 011111100000 0000000000 00 000
Q ss_pred ------------CchHH----HHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhcc------ccceeEEEcccccChHHH
Q 011605 317 ------------KLKPL----YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG------ELRIKIKEYSGLQRQSVR 374 (481)
Q Consensus 317 ------------~~k~~----~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~------~~~~~~~~~~~~~~~~~r 374 (481)
..... .+.+.+.....+++||||.++.+|+.+++.|.+.. .....+..++|.++. +
T Consensus 667 ~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~ 744 (1123)
T PRK11448 667 FEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--P 744 (1123)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--h
Confidence 00000 11111222235799999999999999999887631 112245567888764 7
Q ss_pred HHHHHHHhcCCc-eEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCC---CccEEEEeecchHHHH
Q 011605 375 SKTLKAFREGKI-QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ---LGRCFTLLHKDEVKRF 447 (481)
Q Consensus 375 ~~~~~~f~~g~~-~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~---~g~~~~~~~~~~~~~~ 447 (481)
..+++.|+++.. .|+|+++++.+|+|+|.+.+||++.++.|...|+||+||+.|.-. +..++++...+..+.+
T Consensus 745 ~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~vg~~~~l 821 (1123)
T PRK11448 745 DQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAVDIYEAL 821 (1123)
T ss_pred HHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehHHHHHhc
Confidence 789999999876 689999999999999999999999999999999999999999644 3445555444444433
No 88
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=1.1e-27 Score=250.60 Aligned_cols=302 Identities=19% Similarity=0.258 Sum_probs=191.0
Q ss_pred hhCCCCCCCCEEEECCCCchhHHHhHHH-HHHHHHHhccCCccEEEEccc----HHHHHHHHHHHHHhccccCceEEEec
Q 011605 62 TIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLSNRAVRCLRALVVLPT----RDLALQVKDVFAAIAPAVGLSVGLAV 136 (481)
Q Consensus 62 ~~~~~~~~~~~l~~~~tG~GKT~~~~~~-~~~~l~~~~~~~~~~lil~Pt----~~L~~q~~~~~~~~~~~~~~~~~~~~ 136 (481)
++..+..++.++++|+||||||.. +| ++.. .+......+++.-|. ++++.++++++..- +|-.++...
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle--~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~---lG~~VGY~v 154 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTTQ--LPKICLE--LGRGVKGLIGHTQPRRLAARTVANRIAEELETE---LGGCVGYKV 154 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHHH--HHHHHHH--cCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhh---hcceeceee
Confidence 333333466788999999999984 44 2221 111111233333464 56666666665532 122222111
Q ss_pred cCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH-hhHHHHh
Q 011605 137 GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQ 215 (481)
Q Consensus 137 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~-l~~~~~~ 215 (481)
... .....+++|+++|++.|++.+... ..++++++||+||||. +++.++.
T Consensus 155 rf~---------------------------~~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfL 205 (1294)
T PRK11131 155 RFN---------------------------DQVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFI 205 (1294)
T ss_pred cCc---------------------------cccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchH
Confidence 100 011245699999999999988753 3488999999999994 5544333
Q ss_pred hhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceee
Q 011605 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (481)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~ 295 (481)
. ..+...+.. .+..+++++|||+.. ..+...+...+.+..
T Consensus 206 L--g~Lk~lL~~------------------------------------rpdlKvILmSATid~--e~fs~~F~~apvI~V 245 (1294)
T PRK11131 206 L--GYLKELLPR------------------------------------RPDLKVIITSATIDP--ERFSRHFNNAPIIEV 245 (1294)
T ss_pred H--HHHHHhhhc------------------------------------CCCceEEEeeCCCCH--HHHHHHcCCCCEEEE
Confidence 1 111111111 034589999999953 344444444443322
Q ss_pred cCCccccCcccccccccccCCC--chHHHHHHH---HH---hcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEccc
Q 011605 296 TGETRYKLPERLESYKLICESK--LKPLYLVAL---LQ---SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367 (481)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~--~k~~~l~~~---l~---~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~ 367 (481)
... .+.+.. .|....... .+...+..+ +. ....+.+|||+++..+++.+++.|.+.+.....+..+||
T Consensus 246 ~Gr-~~pVei---~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg 321 (1294)
T PRK11131 246 SGR-TYPVEV---RYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYA 321 (1294)
T ss_pred cCc-cccceE---EEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeeccc
Confidence 221 222111 111111111 112222222 22 234678999999999999999999886533345788999
Q ss_pred ccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCC---------------C---CChhHHHHHhhhcccC
Q 011605 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK---------------P---AYIKTYIHRAGRTARA 429 (481)
Q Consensus 368 ~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~---------------~---~s~~~~~Q~~GR~~R~ 429 (481)
+++..+|..+++. .|..+|||||++++.|+|+|++++||+++. | .|..+|.||.||+||.
T Consensus 322 ~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~ 399 (1294)
T PRK11131 322 RLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 399 (1294)
T ss_pred CCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC
Confidence 9999999998876 478899999999999999999999999862 2 4567999999999999
Q ss_pred CCCccEEEEeecchHHH
Q 011605 430 GQLGRCFTLLHKDEVKR 446 (481)
Q Consensus 430 ~~~g~~~~~~~~~~~~~ 446 (481)
+.|.||.++++.+...
T Consensus 400 -~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 400 -SEGICIRLYSEDDFLS 415 (1294)
T ss_pred -CCcEEEEeCCHHHHHh
Confidence 6899999999877654
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=4.1e-27 Score=231.68 Aligned_cols=298 Identities=20% Similarity=0.218 Sum_probs=187.1
Q ss_pred EEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhcc
Q 011605 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152 (481)
Q Consensus 73 l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 152 (481)
++.|+||+|||.+++.++...+.. +.++||++|+.+|+.|+.+.+++.+ +.++..++|+.+..+....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~----g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~----- 68 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL----GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQA----- 68 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHH-----
Confidence 478999999999987665555444 3479999999999999999998764 5677888887765544332
Q ss_pred ccccCccCChhhHHHhhc-CCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhh---hHHHHHHhcccc
Q 011605 153 KLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA---WLPTVLQLTRSD 228 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~---~~~~l~~~~~~~ 228 (481)
|..+. ...+|+|+|+..++ ..+.++++|||||.|...-+.... +...+......
T Consensus 69 -------------~~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~- 126 (505)
T TIGR00595 69 -------------WRKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK- 126 (505)
T ss_pred -------------HHHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-
Confidence 22232 35799999987653 246789999999999754221100 00111110000
Q ss_pred cccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCccccc
Q 011605 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308 (481)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (481)
..+.+++++|||+..+........................+. +.
T Consensus 127 -----------------------------------~~~~~vil~SATPsles~~~~~~g~~~~~~l~~r~~~~~~p~-v~ 170 (505)
T TIGR00595 127 -----------------------------------KFNCPVVLGSATPSLESYHNAKQKAYRLLVLTRRVSGRKPPE-VK 170 (505)
T ss_pred -----------------------------------hcCCCEEEEeCCCCHHHHHHHhcCCeEEeechhhhcCCCCCe-EE
Confidence 134578999999864433332211111111111111101110 01
Q ss_pred ccccccCC--CchHHHHHHHH-Hhc-CCCeEEEEecchhh----------------------------------------
Q 011605 309 SYKLICES--KLKPLYLVALL-QSL-GEEKCIVFTSSVES---------------------------------------- 344 (481)
Q Consensus 309 ~~~~~~~~--~~k~~~l~~~l-~~~-~~~~~lVf~~s~~~---------------------------------------- 344 (481)
........ ..-...+.+.+ +.. .++++|||+|++..
T Consensus 171 vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~ 250 (505)
T TIGR00595 171 LIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQE 250 (505)
T ss_pred EEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcC
Confidence 11110000 11112233333 222 35689999776332
Q ss_pred --------------------HHHHHHHHhhccccceeEEEcccccChHHH--HHHHHHHhcCCceEEEEccccccCCCCC
Q 011605 345 --------------------THRLCTLLNHFGELRIKIKEYSGLQRQSVR--SKTLKAFREGKIQVLVSSDAMTRGMDVE 402 (481)
Q Consensus 345 --------------------~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r--~~~~~~f~~g~~~iLv~t~~l~~Gvdl~ 402 (481)
.+++.+.|++..+ +.++..+|+++...++ +.+++.|++|+.+|||+|++++.|+|+|
T Consensus 251 ~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp-~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~ 329 (505)
T TIGR00595 251 PIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFP-GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFP 329 (505)
T ss_pred CCCCCCCCCCCCeeEeecccHHHHHHHHHhhCC-CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCC
Confidence 4777777776521 2678889999876655 8899999999999999999999999999
Q ss_pred CCcEEEEcCCCC------------ChhHHHHHhhhcccCCCCccEEEEeec
Q 011605 403 GVNNVVNYDKPA------------YIKTYIHRAGRTARAGQLGRCFTLLHK 441 (481)
Q Consensus 403 ~~~~Vi~~~~~~------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 441 (481)
+++.|+..+... ....|.|++||+||.+..|.+++....
T Consensus 330 ~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 330 NVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred cccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 999886544331 145789999999999988999976543
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3.9e-26 Score=229.63 Aligned_cols=368 Identities=18% Similarity=0.227 Sum_probs=233.3
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|. .|++.|. +..+.-+..-+..++||+|||+++.+|++.....+ ..++|++||+.||.|.++++..+.
T Consensus 79 lg~-~~ydvQl------iGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G----~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 79 LGL-RHFDVQL------IGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISG----RGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred cCC-CcchHHH------hhhhhhccCccccccCCCCchHHHHHHHHHHHhcC----CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 565 6777773 33333356679999999999999999998776554 369999999999999999999999
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcCCCccc-----CCcc
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFTL-----EHLC 199 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~~~~~~-----~~~~ 199 (481)
..+|+.++++.|+.+.......+ .++|+++||..| .+++.......+ ..+.
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y-----------------------~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~ 204 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAY-----------------------KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELN 204 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHh-----------------------CCCEEEECChhhhHHHHhcCCccchHhhhccccc
Confidence 99999999999987765553322 469999999999 888876533333 5899
Q ss_pred EEEEechhHhhHHH----------------HhhhHHHHHHhcccccc----ccccccc------------cc--------
Q 011605 200 YLVVDETDRLLREA----------------YQAWLPTVLQLTRSDNE----NRFSDAS------------TF-------- 239 (481)
Q Consensus 200 ~iVvDE~H~l~~~~----------------~~~~~~~l~~~~~~~~~----~~~~~~~------------~~-------- 239 (481)
++|+||+|.++=+. ....+..+...+..... ..+.... ..
T Consensus 205 ~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~ 284 (896)
T PRK13104 205 FAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKA 284 (896)
T ss_pred eEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhC
Confidence 99999999854321 11112222222111100 0000000 00
Q ss_pred --c---cccccchh-----hh----h-ccccccccCCCCCc-ce------------------------------------
Q 011605 240 --L---PSAFGSLK-----TI----R-RCGVERGFKDKPYP-RL------------------------------------ 267 (481)
Q Consensus 240 --~---~~~~~~~~-----~~----~-~~~~~~~~~~~~~~-~~------------------------------------ 267 (481)
+ ...+.... .+ + ...+.......... .+
T Consensus 285 ~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~ 364 (896)
T PRK13104 285 KLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNEN 364 (896)
T ss_pred CccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCc
Confidence 0 00000000 00 0 00000000000000 00
Q ss_pred ----------------eeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHh--
Q 011605 268 ----------------VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-- 329 (481)
Q Consensus 268 ----------------~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-- 329 (481)
++-.||+|......++...+-.+.+.+++. .+...... .-.+......|...+.+.+..
T Consensus 365 ~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtn--kp~~R~d~-~d~v~~t~~~k~~av~~~i~~~~ 441 (896)
T PRK13104 365 QTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTN--RSMIRKDE-ADLVYLTQADKFQAIIEDVRECG 441 (896)
T ss_pred eeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCC--CCcceecC-CCeEEcCHHHHHHHHHHHHHHHH
Confidence 022344444322222222222121212111 11111111 112233344566555555532
Q ss_pred cCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCC------
Q 011605 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG------ 403 (481)
Q Consensus 330 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~------ 403 (481)
..+.++||||+|+..++.+++.|++.+ +.+..+|+.++..|+..+.++|+.| .|+|||+++++|+|+.=
T Consensus 442 ~~g~PVLVgt~Sie~sE~ls~~L~~~g---i~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~ 516 (896)
T PRK13104 442 VRKQPVLVGTVSIEASEFLSQLLKKEN---IKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAA 516 (896)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcC---CCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhh
Confidence 257799999999999999999999887 8999999999999999999999999 49999999999999872
Q ss_pred --------------------------------CcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchH-------
Q 011605 404 --------------------------------VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV------- 444 (481)
Q Consensus 404 --------------------------------~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~------- 444 (481)
-=+||....+.|..--.|..||+||.|.+|.+..|++-.|.
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~~ 596 (896)
T PRK13104 517 DLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFAS 596 (896)
T ss_pred hhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHHHhCh
Confidence 12688888888988899999999999999999999886544
Q ss_pred HHHHHHHHHhc
Q 011605 445 KRFKKLLQKAD 455 (481)
Q Consensus 445 ~~~~~~~~~~~ 455 (481)
+.+.++++.+.
T Consensus 597 ~~~~~~~~~~~ 607 (896)
T PRK13104 597 ERVASMMRRLG 607 (896)
T ss_pred HHHHHHHHHcC
Confidence 45666666653
No 91
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=2.6e-26 Score=237.97 Aligned_cols=358 Identities=18% Similarity=0.135 Sum_probs=212.2
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (481)
.+++||.+.+..++.....+.+.|+...+|.|||+.++..+ ..+........++|||||. .+..+|.+++.++++ .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~ 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--V 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--C
Confidence 78999999998877544457789999999999999876544 3333322233469999998 566789999999986 4
Q ss_pred ceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHh
Q 011605 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 130 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l 209 (481)
+.+..+.|............ .....++|+|+|++.+...... +.-..+++||+||||.+
T Consensus 245 l~v~~~~G~~~eR~~~~~~~------------------~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrI 303 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREEL------------------LVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRI 303 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHH------------------hcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCcccc
Confidence 56666666544322211100 1123478999999998765433 22235789999999987
Q ss_pred hHHHH--hhhHHHHHHh---ccccccc--c----cccccccccccccchhhhh---------------------------
Q 011605 210 LREAY--QAWLPTVLQL---TRSDNEN--R----FSDASTFLPSAFGSLKTIR--------------------------- 251 (481)
Q Consensus 210 ~~~~~--~~~~~~l~~~---~~~~~~~--~----~~~~~~~~~~~~~~~~~~~--------------------------- 251 (481)
-+... ...+..+... +.+..+- . ++......+..++....+.
T Consensus 304 KN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~L 383 (1033)
T PLN03142 304 KNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLL 383 (1033)
T ss_pred CCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHh
Confidence 55321 1111111110 0000100 0 0000111111111110000
Q ss_pred ccccccccCCCCCcceeeeeeceeeccCc--hhh-----------------------hcccccCCceeecCCccccCccc
Q 011605 252 RCGVERGFKDKPYPRLVKMVLSATLTQDP--NKL-----------------------AQLDLHHPLFLTTGETRYKLPER 306 (481)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~sat~~~~~--~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~ 306 (481)
+..........+......+.+..|..... ..+ +...+.+|..+....... .
T Consensus 384 RR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~---~- 459 (1033)
T PLN03142 384 RRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGP---P- 459 (1033)
T ss_pred hhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccC---c-
Confidence 00000000011111111111111110000 000 000111121111100000 0
Q ss_pred ccccccccCCCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcC
Q 011605 307 LESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384 (481)
Q Consensus 307 ~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 384 (481)
............|...+..++... .++++|||+........|.++|...+ +.+..++|+++..+|..+++.|.+.
T Consensus 460 ~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g---~~y~rIdGsts~~eRq~~Id~Fn~~ 536 (1033)
T PLN03142 460 YTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRG---YQYCRIDGNTGGEDRDASIDAFNKP 536 (1033)
T ss_pred ccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHhccc
Confidence 000011123345677777777654 56799999999999999999998766 7889999999999999999999753
Q ss_pred ---CceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEe
Q 011605 385 ---KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439 (481)
Q Consensus 385 ---~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~ 439 (481)
...+|++|.+.+.|+|++.+++||+|+++|++....|++||+.|.|+...|.+|.
T Consensus 537 ~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 537 GSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred cCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 3467899999999999999999999999999999999999999999996666653
No 92
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=1.1e-26 Score=244.26 Aligned_cols=321 Identities=18% Similarity=0.255 Sum_probs=202.5
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
..|...-|..... +.++..+..++.++++|+||||||... |.+- +..+.....++++.-|.+--+...+..+.+.
T Consensus 60 ~~~~~~LPi~~~~-~~Il~~l~~~~vvii~g~TGSGKTTql--Pq~l-le~~~~~~~~I~~tQPRRlAA~svA~RvA~e- 134 (1283)
T TIGR01967 60 IRYPDNLPVSAKR-EDIAEAIAENQVVIIAGETGSGKTTQL--PKIC-LELGRGSHGLIGHTQPRRLAARTVAQRIAEE- 134 (1283)
T ss_pred ccCCCCCCHHHHH-HHHHHHHHhCceEEEeCCCCCCcHHHH--HHHH-HHcCCCCCceEecCCccHHHHHHHHHHHHHH-
Confidence 4554444444322 344444444677899999999999853 3221 1121112224555568776666655554433
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEec
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE 205 (481)
.|..++..+|..-..+. ....++.|.++|++.|.+.+.... .++++++|||||
T Consensus 135 --lg~~lG~~VGY~vR~~~-----------------------~~s~~T~I~~~TdGiLLr~l~~d~--~L~~~~~IIIDE 187 (1283)
T TIGR01967 135 --LGTPLGEKVGYKVRFHD-----------------------QVSSNTLVKLMTDGILLAETQQDR--FLSRYDTIIIDE 187 (1283)
T ss_pred --hCCCcceEEeeEEcCCc-----------------------ccCCCceeeeccccHHHHHhhhCc--ccccCcEEEEcC
Confidence 24444444443211111 112356899999999998886533 478999999999
Q ss_pred hhH-hhHHHHhh-hHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhh
Q 011605 206 TDR-LLREAYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 283 (481)
Q Consensus 206 ~H~-l~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~ 283 (481)
+|. .++.++.- .+..++... +..++++||||+. ...+
T Consensus 188 aHERsL~~D~LL~lLk~il~~r---------------------------------------pdLKlIlmSATld--~~~f 226 (1283)
T TIGR01967 188 AHERSLNIDFLLGYLKQLLPRR---------------------------------------PDLKIIITSATID--PERF 226 (1283)
T ss_pred cchhhccchhHHHHHHHHHhhC---------------------------------------CCCeEEEEeCCcC--HHHH
Confidence 994 54433332 122222111 3458999999995 3344
Q ss_pred hcccccCCceeecCCccccCcccccccccccC-C----CchHHHHHHHHHh---cCCCeEEEEecchhhHHHHHHHHhhc
Q 011605 284 AQLDLHHPLFLTTGETRYKLPERLESYKLICE-S----KLKPLYLVALLQS---LGEEKCIVFTSSVESTHRLCTLLNHF 355 (481)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~k~~~l~~~l~~---~~~~~~lVf~~s~~~~~~l~~~L~~~ 355 (481)
...+...+.+.... ..+..... |..... . ..+...+...+.. ...+.+|||+++..+++.+++.|.+.
T Consensus 227 a~~F~~apvI~V~G-r~~PVev~---Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~ 302 (1283)
T TIGR01967 227 SRHFNNAPIIEVSG-RTYPVEVR---YRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKR 302 (1283)
T ss_pred HHHhcCCCEEEECC-CcccceeE---EecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhc
Confidence 44444444433222 22222111 111111 1 1122222222222 24688999999999999999999876
Q ss_pred cccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCC------------------CChh
Q 011605 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------------------AYIK 417 (481)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~------------------~s~~ 417 (481)
+.....+..+||.++..++..+++.+ +..+|||||++++.|+|+|++++||+++.+ .|..
T Consensus 303 ~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISka 380 (1283)
T TIGR01967 303 NLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQA 380 (1283)
T ss_pred CCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHH
Confidence 54446788999999999999886543 346999999999999999999999998843 3567
Q ss_pred HHHHHhhhcccCCCCccEEEEeecchHHH
Q 011605 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKR 446 (481)
Q Consensus 418 ~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 446 (481)
++.||.||+||.+ +|.||.+++..+...
T Consensus 381 sa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 381 SANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred HHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 9999999999997 999999999876644
No 93
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=228.17 Aligned_cols=363 Identities=20% Similarity=0.215 Sum_probs=251.0
Q ss_pred ccCCCCCCCCCCCH-HHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCc
Q 011605 24 FEDCPLDHLPCLDP-RLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102 (481)
Q Consensus 24 ~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~ 102 (481)
++-+.+.....+++ ...-..+..|...++.||.+++. ....++++|.+..+||+.|||+++-+.++..+.-. +.
T Consensus 196 ~etl~~~~a~~~~~k~~~~~~~~kgi~~~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr 270 (1008)
T KOG0950|consen 196 LETLLFGFAKRLPTKVSHLYAKDKGILKLFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RR 270 (1008)
T ss_pred hhhhhhhhhhcCchHHHHHHHHhhhHHHHHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---hh
Confidence 33333333333444 44444556899999999999864 45566789999999999999999888777666553 33
Q ss_pred cEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchH
Q 011605 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (481)
Q Consensus 103 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~ 182 (481)
.++.+.|-.+.+..-...+..++..+|+.+....|........ ..-.+.|+|.++
T Consensus 271 ~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~-------------------------k~~sv~i~tiEk 325 (1008)
T KOG0950|consen 271 NVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR-------------------------KRESVAIATIEK 325 (1008)
T ss_pred ceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcc-------------------------cceeeeeeehHh
Confidence 6999999999998888888888888899888877766543321 223799999998
Q ss_pred HHHHHhcCC-CcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCC
Q 011605 183 LMDHINATR-GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (481)
Q Consensus 183 l~~~l~~~~-~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (481)
-..+..+.- .-.+..+++|||||.|.+.+.+.+..++.++..+...+..
T Consensus 326 anslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~------------------------------ 375 (1008)
T KOG0950|consen 326 ANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLE------------------------------ 375 (1008)
T ss_pred hHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccc------------------------------
Confidence 766554421 1246678999999999999999999999999887654432
Q ss_pred CCCcceeeeeeceeeccCc--hhhhcccccCCceeecCCccccCccccc---------------ccc---cccCCCchHH
Q 011605 262 KPYPRLVKMVLSATLTQDP--NKLAQLDLHHPLFLTTGETRYKLPERLE---------------SYK---LICESKLKPL 321 (481)
Q Consensus 262 ~~~~~~~~v~~sat~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~---~~~~~~~k~~ 321 (481)
..+++|.||||..+.. ..+...... ..........+.+. .+. .....+....
T Consensus 376 ---~~~~iIGMSATi~N~~lL~~~L~A~~y-----~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD 447 (1008)
T KOG0950|consen 376 ---TSVQIIGMSATIPNNSLLQDWLDAFVY-----TTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPD 447 (1008)
T ss_pred ---cceeEeeeecccCChHHHHHHhhhhhe-----ecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCc
Confidence 1257899999997542 223332221 11111111111110 000 0000111111
Q ss_pred HHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccc-----------------------------------cceeEEE
Q 011605 322 YLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGE-----------------------------------LRIKIKE 364 (481)
Q Consensus 322 ~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~-----------------------------------~~~~~~~ 364 (481)
.+..++.+. .+.++||||++.+.|+.++..+...-+ ...++++
T Consensus 448 ~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAy 527 (1008)
T KOG0950|consen 448 HLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAY 527 (1008)
T ss_pred ceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheecccccee
Confidence 222222221 245699999999999999866643100 2247889
Q ss_pred cccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcC----CCCChhHHHHHhhhcccCCCC--ccEEEE
Q 011605 365 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD----KPAYIKTYIHRAGRTARAGQL--GRCFTL 438 (481)
Q Consensus 365 ~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~----~~~s~~~~~Q~~GR~~R~~~~--g~~~~~ 438 (481)
+|.++..++|..+...|++|...|++||+.+..|+|+|.-++++-+. ...+...|.||+|||||.|-+ |.++++
T Consensus 528 HhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI 607 (1008)
T KOG0950|consen 528 HHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILI 607 (1008)
T ss_pred cccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEE
Confidence 99999999999999999999999999999999999999766655432 223466899999999999876 999999
Q ss_pred eecchHHHHHHHHHHh
Q 011605 439 LHKDEVKRFKKLLQKA 454 (481)
Q Consensus 439 ~~~~~~~~~~~~~~~~ 454 (481)
+...+..+...+++.-
T Consensus 608 ~k~~e~~~~~~lv~~~ 623 (1008)
T KOG0950|consen 608 IKSSEKKRVRELVNSP 623 (1008)
T ss_pred eeccchhHHHHHHhcc
Confidence 9999988888766543
No 94
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=3.1e-26 Score=224.53 Aligned_cols=317 Identities=18% Similarity=0.177 Sum_probs=217.1
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 45 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.++| +|-.+|++|+.++.. |.+++|.|+|.+|||+++-.++.-.. ..+.+++|-+|-++|.+|.+++++..
T Consensus 293 ~~pF-elD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAialaq----~h~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIALAQ----KHMTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHHHH----hhccceEecchhhhhccchHHHHHHh
Confidence 3677 899999999888664 89999999999999999776543222 23458999999999999999999887
Q ss_pred ccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEe
Q 011605 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (481)
Q Consensus 125 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvD 204 (481)
+... .+++|+..+. ..+.++|+|.+.|.+++.++.. ..+++..||||
T Consensus 364 F~Dv----gLlTGDvqin----------------------------PeAsCLIMTTEILRsMLYrgad-liRDvE~VIFD 410 (1248)
T KOG0947|consen 364 FGDV----GLLTGDVQIN----------------------------PEASCLIMTTEILRSMLYRGAD-LIRDVEFVIFD 410 (1248)
T ss_pred cccc----ceeecceeeC----------------------------CCcceEeehHHHHHHHHhcccc-hhhccceEEEe
Confidence 6543 3788887643 3458999999999999987553 37789999999
Q ss_pred chhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchh--
Q 011605 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK-- 282 (481)
Q Consensus 205 E~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~-- 282 (481)
|+|-+-+...+--.+.++-+++ +.+..|++|||.++....
T Consensus 411 EVHYiND~eRGvVWEEViIMlP--------------------------------------~HV~~IlLSATVPN~~EFA~ 452 (1248)
T KOG0947|consen 411 EVHYINDVERGVVWEEVIIMLP--------------------------------------RHVNFILLSATVPNTLEFAD 452 (1248)
T ss_pred eeeecccccccccceeeeeecc--------------------------------------ccceEEEEeccCCChHHHHH
Confidence 9997655544444444433332 244677888888765433
Q ss_pred hhcccccCCceeecCCcc-ccCc---------------------c------------------------c---------c
Q 011605 283 LAQLDLHHPLFLTTGETR-YKLP---------------------E------------------------R---------L 307 (481)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~-~~~~---------------------~------------------------~---------~ 307 (481)
|+.+.....+.+.....+ .++. . . .
T Consensus 453 WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk 532 (1248)
T KOG0947|consen 453 WIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGK 532 (1248)
T ss_pred HhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCc
Confidence 333322221111111000 0000 0 0 0
Q ss_pred cc-------cccccCCCch---HHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccc--------------------
Q 011605 308 ES-------YKLICESKLK---PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-------------------- 357 (481)
Q Consensus 308 ~~-------~~~~~~~~~k---~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~-------------------- 357 (481)
.. .........+ ...+..-+++..--+++|||-|.+.|++.++.|....-
T Consensus 533 ~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rL 612 (1248)
T KOG0947|consen 533 TNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARL 612 (1248)
T ss_pred CCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhc
Confidence 00 0000000111 22333334444456899999999999999999965211
Q ss_pred ----------------cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCC--------
Q 011605 358 ----------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-------- 413 (481)
Q Consensus 358 ----------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~-------- 413 (481)
..-+++.+||++=.--++-+...|..|-.+||+||.++++|+|.|. +.||+-+..
T Consensus 613 k~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA-RtvVF~Sl~KhDG~efR 691 (1248)
T KOG0947|consen 613 KGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA-RTVVFSSLRKHDGNEFR 691 (1248)
T ss_pred ChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc-eeEEeeehhhccCccee
Confidence 1237889999999889999999999999999999999999999996 445543322
Q ss_pred -CChhHHHHHhhhcccCCCC--ccEEEEeecc
Q 011605 414 -AYIKTYIHRAGRTARAGQL--GRCFTLLHKD 442 (481)
Q Consensus 414 -~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~ 442 (481)
-.+.+|.||+|||||.|-+ |.+++++...
T Consensus 692 ~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 692 ELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred ecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 2478999999999999977 6666665543
No 95
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.94 E-value=8.2e-26 Score=199.53 Aligned_cols=195 Identities=31% Similarity=0.512 Sum_probs=162.7
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc-cCCccEEEEcccHHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDL 113 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~-~~~~~~lil~Pt~~L 113 (481)
+++.+.+.+.++|+..|+++|.++++.+.. ++++++.+|||+|||++++++++..+.... ..+++++|++|+++|
T Consensus 6 ~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L 81 (203)
T cd00268 6 LSPELLRGIYALGFEKPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTREL 81 (203)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHH
Confidence 999999999999999999999999999886 899999999999999999999998887752 246789999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCc
Q 011605 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
+.|+...+..+....++.+....|+......... ...+++|+|+||+.+...+.... .
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~iiv~T~~~l~~~l~~~~-~ 139 (203)
T cd00268 82 ALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRK---------------------LKRGPHIVVATPGRLLDLLERGK-L 139 (203)
T ss_pred HHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---------------------hcCCCCEEEEChHHHHHHHHcCC-C
Confidence 9999999999987778888888888776544322 22467999999999999887644 6
Q ss_pred ccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeec
Q 011605 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 273 (481)
.+.+++++|+||+|.+.+.++...+..+...+.. ..+++++|
T Consensus 140 ~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~--------------------------------------~~~~~~~S 181 (203)
T cd00268 140 DLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK--------------------------------------DRQTLLFS 181 (203)
T ss_pred ChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc--------------------------------------ccEEEEEe
Confidence 6788999999999998877777777777766532 34799999
Q ss_pred eeeccCchhhhcccccCCce
Q 011605 274 ATLTQDPNKLAQLDLHHPLF 293 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~ 293 (481)
||+++.........+.+++.
T Consensus 182 AT~~~~~~~~~~~~~~~~~~ 201 (203)
T cd00268 182 ATMPKEVRDLARKFLRNPVR 201 (203)
T ss_pred ccCCHHHHHHHHHHCCCCEE
Confidence 99997777777666666554
No 96
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.1e-25 Score=225.45 Aligned_cols=368 Identities=19% Similarity=0.216 Sum_probs=228.1
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|. .|++.|.-..-. + +..-+..+.||.|||+++.++++-....+. .+-+++|+..||.|-++++..+.
T Consensus 77 ~g~-~~~dvQlig~l~-l-----~~G~iaEm~TGEGKTLvA~l~a~l~al~G~----~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 77 LGL-RPFDVQIIGGIV-L-----HEGNIAEMKTGEGKTLTATLPVYLNALTGK----GVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred hCC-CCchhHHHHHHH-H-----hcCCcccccCCCCCcHHHHHHHHHHHHcCC----CeEEEeccHHHHHhhHHHHHHHH
Confidence 676 788888665432 2 334499999999999999888877666653 79999999999999999999999
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcCC-----CcccCCcc
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~~-----~~~~~~~~ 199 (481)
..+|++++++.++.+...+...+ .++|+++|...+ .+.|+... ......+.
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y-----------------------~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~ 202 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAY-----------------------NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLN 202 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHh-----------------------cCCCeecCCccccccchhhccccchhhhhccCcc
Confidence 99999999999987666554332 459999998766 23333311 11245788
Q ss_pred EEEEechhHhhHH----------------HHhhhHHHHHHhcccccc---------ccccc------------------c
Q 011605 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNE---------NRFSD------------------A 236 (481)
Q Consensus 200 ~iVvDE~H~l~~~----------------~~~~~~~~l~~~~~~~~~---------~~~~~------------------~ 236 (481)
+.||||++.++=+ .....+..+...+..... ..+.. .
T Consensus 203 ~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~ 282 (796)
T PRK12906 203 YAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEK 282 (796)
T ss_pred eeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHH
Confidence 9999999974221 011112222221111000 00000 0
Q ss_pred cccccccccch-----hhhh-----ccccccccCCCCC-cce--------------------------------------
Q 011605 237 STFLPSAFGSL-----KTIR-----RCGVERGFKDKPY-PRL-------------------------------------- 267 (481)
Q Consensus 237 ~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~-~~~-------------------------------------- 267 (481)
.......+... ..+. ...+......... .++
T Consensus 283 ~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t 362 (796)
T PRK12906 283 LFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQT 362 (796)
T ss_pred HcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCcee
Confidence 00000000000 0000 0000000000000 000
Q ss_pred --------------eeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhc--C
Q 011605 268 --------------VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--G 331 (481)
Q Consensus 268 --------------~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~ 331 (481)
++..||.|.......+...+..+...+++ ..+...... .-........|...+.+.+... .
T Consensus 363 ~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPt--nkp~~r~d~-~d~i~~t~~~K~~al~~~i~~~~~~ 439 (796)
T PRK12906 363 LATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPT--NRPVIRKDS-PDLLYPTLDSKFNAVVKEIKERHAK 439 (796)
T ss_pred eeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCC--CCCeeeeeC-CCeEEcCHHHHHHHHHHHHHHHHhC
Confidence 13344444432222222212111111111 111110111 1112233345666776666433 6
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCC---CCc---
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---GVN--- 405 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~---~~~--- 405 (481)
+.++||||+|+..++.+++.|.+.+ +.+..+|+.+...|+..+.++++.|. |+|||+++++|+||+ ++.
T Consensus 440 g~pvLI~t~si~~se~ls~~L~~~g---i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 440 GQPVLVGTVAIESSERLSHLLDEAG---IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCC---CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhC
Confidence 7899999999999999999999887 88899999999888888887777775 999999999999995 677
Q ss_pred --EEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchH-------HHHHHHHHHhc
Q 011605 406 --NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKAD 455 (481)
Q Consensus 406 --~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~~~~~~~ 455 (481)
+||+++.|.|...+.|+.||+||.|.+|.+..|++..|. +++.+++..+.
T Consensus 515 GLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~~~f~~~~~~~~~~~~~ 573 (796)
T PRK12906 515 GLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSDRVKAFLDRLG 573 (796)
T ss_pred CcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHHHhhCcHHHHHHHHHcC
Confidence 999999999999999999999999999999999987644 24555555543
No 97
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=6.2e-25 Score=220.85 Aligned_cols=368 Identities=19% Similarity=0.193 Sum_probs=235.2
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|. .|++.|.-..-. + ++.-+..+.||+|||+++.+|++-....+ ..+-|++||..||.|-++++..+.
T Consensus 78 lg~-~~~dvQlig~l~-L-----~~G~Iaem~TGeGKTLva~lpa~l~aL~G----~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LGM-RHFDVQLIGGMV-L-----HEGKIAEMKTGEGKTLVATLPAYLNALTG----KGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hCC-CCCccHHHhhHH-h-----cCCchhhhhcCCCcHHHHHHHHHHHHHcC----CCEEEEecCHHHHHHHHHHHHHHH
Confidence 676 788888554332 2 44569999999999999999886443443 258899999999999999999999
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcCCC-----cccCCcc
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLC 199 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~~~-----~~~~~~~ 199 (481)
..+|++++++.|+.+...+...+ .++|+++|+..| .+++..... ...+.+.
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y-----------------------~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~ 203 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAY-----------------------AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLN 203 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhc-----------------------CCCeEEECCcchhhhhhhcccccchhhhcccccc
Confidence 99999999999988766553332 369999999999 777765432 2367889
Q ss_pred EEEEechhHhhHH----------------HHhhhHHHHHHhcccccc---------------------------cccccc
Q 011605 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNE---------------------------NRFSDA 236 (481)
Q Consensus 200 ~iVvDE~H~l~~~----------------~~~~~~~~l~~~~~~~~~---------------------------~~~~~~ 236 (481)
++||||++.++=+ .....+..+...+..... +.+...
T Consensus 204 ~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~ 283 (830)
T PRK12904 204 YAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPE 283 (830)
T ss_pred eEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChh
Confidence 9999999975332 112222222222211000 000000
Q ss_pred c----ccccccccchhhhh-------ccccccccCCC---CCc------c------------------------------
Q 011605 237 S----TFLPSAFGSLKTIR-------RCGVERGFKDK---PYP------R------------------------------ 266 (481)
Q Consensus 237 ~----~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~~------~------------------------------ 266 (481)
. .....++.+...+. .++.....+.. ..+ +
T Consensus 284 ~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr 363 (830)
T PRK12904 284 NIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFR 363 (830)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHH
Confidence 0 00000000000000 00000000000 000 0
Q ss_pred --eeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHh--cCCCeEEEEecch
Q 011605 267 --LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV 342 (481)
Q Consensus 267 --~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~ 342 (481)
.++..||+|.......+...+-.+...+++. .+..... ..-.+......|...+.+.+.. ..+.++||||+|+
T Consensus 364 ~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtn--kp~~r~d-~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si 440 (830)
T PRK12904 364 MYEKLAGMTGTADTEAEEFREIYNLDVVVIPTN--RPMIRID-HPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSI 440 (830)
T ss_pred hcchhcccCCCcHHHHHHHHHHhCCCEEEcCCC--CCeeeee-CCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 0134555555433222222222222222221 1111111 1112233445577777777755 4677999999999
Q ss_pred hhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCC------------------
Q 011605 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV------------------ 404 (481)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~------------------ 404 (481)
..++.+++.|.+.+ +.+..+|+. ..+|++.+.+|+.+...|+|||+++++|+||+--
T Consensus 441 ~~se~Ls~~L~~~g---i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~ 515 (830)
T PRK12904 441 EKSELLSKLLKKAG---IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQ 515 (830)
T ss_pred HHHHHHHHHHHHCC---CceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHH
Confidence 99999999999877 888999996 6689999999999999999999999999999732
Q ss_pred --------------------cEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchH-------HHHHHHHHHhc
Q 011605 405 --------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKAD 455 (481)
Q Consensus 405 --------------------~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~~~~~~~ 455 (481)
=+||....+.|..--.|..||+||.|.+|.+..|++-.|. +.+.++++.+.
T Consensus 516 ~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~~~f~~~~~~~~~~~~~ 593 (830)
T PRK12904 516 IAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLG 593 (830)
T ss_pred HHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHHHhhchHHHHHHHHHcC
Confidence 1688888899999999999999999999999999887643 35556666553
No 98
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.1e-25 Score=226.94 Aligned_cols=324 Identities=20% Similarity=0.190 Sum_probs=229.3
Q ss_pred HHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHH
Q 011605 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (481)
Q Consensus 41 ~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~ 120 (481)
.....++| .|-++|++++..+-. +.+++++||||+|||.++-.++...+..+. +++|.+|.++|.+|.+++
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Ler----~esVlV~ApTssGKTvVaeyAi~~al~~~q----rviYTsPIKALsNQKyrd 181 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILER----GESVLVCAPTSSGKTVVAEYAIALALRDGQ----RVIYTSPIKALSNQKYRD 181 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHhC----CCcEEEEccCCCCcchHHHHHHHHHHHcCC----ceEeccchhhhhhhHHHH
Confidence 34456888 899999999877554 899999999999999999888777666653 699999999999999998
Q ss_pred HHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccE
Q 011605 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCY 200 (481)
Q Consensus 121 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~ 200 (481)
+........--++..+|+.++. .+..++|+|.+.|.+.+..+ ...+.++..
T Consensus 182 l~~~fgdv~~~vGL~TGDv~IN----------------------------~~A~clvMTTEILRnMlyrg-~~~~~~i~~ 232 (1041)
T COG4581 182 LLAKFGDVADMVGLMTGDVSIN----------------------------PDAPCLVMTTEILRNMLYRG-SESLRDIEW 232 (1041)
T ss_pred HHHHhhhhhhhccceecceeeC----------------------------CCCceEEeeHHHHHHHhccC-cccccccce
Confidence 8766542212246778877642 44589999999999988874 466889999
Q ss_pred EEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCc
Q 011605 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (481)
Q Consensus 201 iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~ 280 (481)
|||||+|.+.+...+--.+.++-+++ ..++.+++|||.++..
T Consensus 233 ViFDEvHyi~D~eRG~VWEE~Ii~lP--------------------------------------~~v~~v~LSATv~N~~ 274 (1041)
T COG4581 233 VVFDEVHYIGDRERGVVWEEVIILLP--------------------------------------DHVRFVFLSATVPNAE 274 (1041)
T ss_pred EEEEeeeeccccccchhHHHHHHhcC--------------------------------------CCCcEEEEeCCCCCHH
Confidence 99999998877777766676666654 3457899999998765
Q ss_pred hh--hhcccccCCceeecCCccccC-----ccccccccccc---------------------------------------
Q 011605 281 NK--LAQLDLHHPLFLTTGETRYKL-----PERLESYKLIC--------------------------------------- 314 (481)
Q Consensus 281 ~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--------------------------------------- 314 (481)
.. |+......+..+.....++.. ......+....
T Consensus 275 EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~ 354 (1041)
T COG4581 275 EFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRT 354 (1041)
T ss_pred HHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccc
Confidence 44 333323333322222111100 00000000000
Q ss_pred -------CCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhcc-------------------------c-----
Q 011605 315 -------ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-------------------------E----- 357 (481)
Q Consensus 315 -------~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-------------------------~----- 357 (481)
....+...+...+.....-++++|+-+.+.|+..+..+.... +
T Consensus 355 ~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~ 434 (1041)
T COG4581 355 KALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPL 434 (1041)
T ss_pred cccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcc
Confidence 011112334444555556789999999999999988775210 0
Q ss_pred --------cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcC---------CCCChhHHH
Q 011605 358 --------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD---------KPAYIKTYI 420 (481)
Q Consensus 358 --------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~---------~~~s~~~~~ 420 (481)
+.-+++++|+++=...+..+...|..|-.+++++|.+++.|+|.|.-+ |++.. ..-++.+|.
T Consensus 435 ~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart-vv~~~l~K~dG~~~r~L~~gEy~ 513 (1041)
T COG4581 435 QILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART-VVFTSLSKFDGNGHRWLSPGEYT 513 (1041)
T ss_pred cHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc-eeeeeeEEecCCceeecChhHHH
Confidence 112466899999999999999999999999999999999999999655 44433 223578999
Q ss_pred HHhhhcccCCCC--ccEEEEeec
Q 011605 421 HRAGRTARAGQL--GRCFTLLHK 441 (481)
Q Consensus 421 Q~~GR~~R~~~~--g~~~~~~~~ 441 (481)
|+.|||||.|.+ |.++++...
T Consensus 514 QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 514 QMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred HhhhhhccccccccceEEEecCC
Confidence 999999999988 777776443
No 99
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=4.4e-24 Score=214.20 Aligned_cols=369 Identities=17% Similarity=0.206 Sum_probs=232.8
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|. .|++.|. +..+.-++.-+..++||.|||+++.+|++-....+ ..+.|++|+..|+.+-.+++..+.
T Consensus 79 lgm-~~ydVQl------iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g----~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 79 FEM-RHFDVQL------LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTG----KGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred hCC-CcCchHH------hcchHhcCCccccccCCCCchHHHHHHHHHHHhcC----CCEEEEeCCHHHHHHHHHHHHHHH
Confidence 565 7788883 44333466779999999999999999987666554 359999999999999999999999
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcCCCcc-----cCCcc
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFT-----LEHLC 199 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~~~~~-----~~~~~ 199 (481)
..+|+++.++.++......... -.++|+++|+..+ ++++....... ...+.
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~-----------------------Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~ 204 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAA-----------------------YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLH 204 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhc-----------------------CCCCeEEeCCCcccchhhhccCccchhhhhccccc
Confidence 9999999999888765433211 2569999999999 77776642222 37789
Q ss_pred EEEEechhHhhHHH----------------HhhhHHHHHHhcccc-c--------cccccccc----------------c
Q 011605 200 YLVVDETDRLLREA----------------YQAWLPTVLQLTRSD-N--------ENRFSDAS----------------T 238 (481)
Q Consensus 200 ~iVvDE~H~l~~~~----------------~~~~~~~l~~~~~~~-~--------~~~~~~~~----------------~ 238 (481)
++||||++.++-+. ....+..+...+... . ...+.... .
T Consensus 205 ~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~ 284 (908)
T PRK13107 205 YALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVEN 284 (908)
T ss_pred eeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHH
Confidence 99999999864431 111111111111100 0 00000000 0
Q ss_pred cc---------cccccchh---------------hhh-------ccccccccCCCCC---c------ce-----------
Q 011605 239 FL---------PSAFGSLK---------------TIR-------RCGVERGFKDKPY---P------RL----------- 267 (481)
Q Consensus 239 ~~---------~~~~~~~~---------------~~~-------~~~~~~~~~~~~~---~------~~----------- 267 (481)
.+ ...+.... .+. .++.....+.... + ++
T Consensus 285 ~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~ 364 (908)
T PRK13107 285 LLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVH 364 (908)
T ss_pred HHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCC
Confidence 00 00000000 000 0000000000000 0 00
Q ss_pred ---------------------eeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHH
Q 011605 268 ---------------------VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326 (481)
Q Consensus 268 ---------------------~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 326 (481)
++..||.|......++...+..+.+.+++. .+........ .+......|...+.+.
T Consensus 365 I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTn--kp~~R~d~~d-~iy~t~~~K~~Aii~e 441 (908)
T PRK13107 365 IQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTN--RPMVRKDMAD-LVYLTADEKYQAIIKD 441 (908)
T ss_pred CCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCC--CCccceeCCC-cEEeCHHHHHHHHHHH
Confidence 022344444322222222221111212111 1111111111 1223334565555554
Q ss_pred HHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCC-
Q 011605 327 LQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG- 403 (481)
Q Consensus 327 l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~- 403 (481)
+... .+.++||||.|+..++.++..|...+ +.+..+|+.++..|+..+.++|+.|. |+|||+++++|+|+.=
T Consensus 442 i~~~~~~GrpVLV~t~sv~~se~ls~~L~~~g---i~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLg 516 (908)
T PRK13107 442 IKDCRERGQPVLVGTVSIEQSELLARLMVKEK---IPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLG 516 (908)
T ss_pred HHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCC---CCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecC
Confidence 4332 57799999999999999999999877 88899999999999999999999997 9999999999999971
Q ss_pred ------------------------------------CcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchH---
Q 011605 404 ------------------------------------VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV--- 444 (481)
Q Consensus 404 ------------------------------------~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~--- 444 (481)
-=+||....+.|..-=.|..||+||.|.+|.+..|++-.|.
T Consensus 517 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~r 596 (908)
T PRK13107 517 GNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMR 596 (908)
T ss_pred CchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHHH
Confidence 12688888899988899999999999999999999887655
Q ss_pred ----HHHHHHHHHhcC
Q 011605 445 ----KRFKKLLQKADN 456 (481)
Q Consensus 445 ----~~~~~~~~~~~~ 456 (481)
+.+.++++.+..
T Consensus 597 ~f~~~~~~~~~~~~~~ 612 (908)
T PRK13107 597 IFASDRVSGMMKKLGM 612 (908)
T ss_pred HhChHHHHHHHHHcCC
Confidence 566777777643
No 100
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=3.7e-25 Score=211.91 Aligned_cols=314 Identities=18% Similarity=0.220 Sum_probs=218.7
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 45 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.+.| .+-++|..++..+- ++.++++.|.|.+|||.++-.++...+...+ ++||-.|-++|.+|.++++..-
T Consensus 125 ~YPF-~LDpFQ~~aI~Cid----r~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ----RVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 125 TYPF-TLDPFQSTAIKCID----RGESVLVSAHTSAGKTVVAEYAIAMSLREKQ----RVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred CCCc-ccCchHhhhhhhhc----CCceEEEEeecCCCcchHHHHHHHHHHHhcC----eEEeeChhhhhcchhHHHHHHH
Confidence 3555 78899998877644 3889999999999999999888887777754 8999999999999999988766
Q ss_pred ccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEe
Q 011605 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (481)
Q Consensus 125 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvD 204 (481)
+. .+++.+|+..+. ..+--+|+|.+.|...+.++. -.++.+..||||
T Consensus 196 F~----DVGLMTGDVTIn----------------------------P~ASCLVMTTEILRsMLYRGS-EvmrEVaWVIFD 242 (1041)
T KOG0948|consen 196 FK----DVGLMTGDVTIN----------------------------PDASCLVMTTEILRSMLYRGS-EVMREVAWVIFD 242 (1041)
T ss_pred hc----ccceeecceeeC----------------------------CCCceeeeHHHHHHHHHhccc-hHhheeeeEEee
Confidence 54 456677877643 234678999999999888744 347789999999
Q ss_pred chhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhh-
Q 011605 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL- 283 (481)
Q Consensus 205 E~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~- 283 (481)
|+|-|-+...+--.+..+-+++ +.++.+|+|||.++.....
T Consensus 243 EIHYMRDkERGVVWEETIIllP--------------------------------------~~vr~VFLSATiPNA~qFAe 284 (1041)
T KOG0948|consen 243 EIHYMRDKERGVVWEETIILLP--------------------------------------DNVRFVFLSATIPNARQFAE 284 (1041)
T ss_pred eehhccccccceeeeeeEEecc--------------------------------------ccceEEEEeccCCCHHHHHH
Confidence 9998744432211111111110 4567899999998776553
Q ss_pred -hcccccCCceeecCCccccCccccccc---------ccccC--------------------------------------
Q 011605 284 -AQLDLHHPLFLTTGETRYKLPERLESY---------KLICE-------------------------------------- 315 (481)
Q Consensus 284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-------------------------------------- 315 (481)
+....+.|..+....-+ +...++| ..+..
T Consensus 285 WI~~ihkQPcHVVYTdyR---PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~ 361 (1041)
T KOG0948|consen 285 WICHIHKQPCHVVYTDYR---PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGT 361 (1041)
T ss_pred HHHHHhcCCceEEeecCC---CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCc
Confidence 33333344332221111 1111111 00000
Q ss_pred -----CCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccc---------------------------------
Q 011605 316 -----SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE--------------------------------- 357 (481)
Q Consensus 316 -----~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~--------------------------------- 357 (481)
.......+...+-.....++|||+-|.++|+.+|-.+.++.-
T Consensus 362 ~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~i 441 (1041)
T KOG0948|consen 362 GGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENI 441 (1041)
T ss_pred CCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHH
Confidence 000112233333333467999999999999999988865210
Q ss_pred ---cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCC---------CChhHHHHHhhh
Q 011605 358 ---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYIHRAGR 425 (481)
Q Consensus 358 ---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~---------~s~~~~~Q~~GR 425 (481)
+.-+++++|+|+=..-++-+.-.|++|-.++|+||.+++.|+|.|.-++|+- ... -|-.+|+||.||
T Consensus 442 LPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT-~~rKfDG~~fRwissGEYIQMSGR 520 (1041)
T KOG0948|consen 442 LPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT-AVRKFDGKKFRWISSGEYIQMSGR 520 (1041)
T ss_pred HHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe-eccccCCcceeeecccceEEeccc
Confidence 3347889999998888888999999999999999999999999997554443 211 235589999999
Q ss_pred cccCCCC--ccEEEEeecc
Q 011605 426 TARAGQL--GRCFTLLHKD 442 (481)
Q Consensus 426 ~~R~~~~--g~~~~~~~~~ 442 (481)
|||.|.+ |.|+++++..
T Consensus 521 AGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 521 AGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ccccCCCCCceEEEEecCc
Confidence 9999987 8888888754
No 101
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=7.4e-23 Score=205.76 Aligned_cols=146 Identities=18% Similarity=0.256 Sum_probs=119.3
Q ss_pred CCCHHHHHHHH-----HCCCCcc---chhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEE
Q 011605 34 CLDPRLKVALQ-----NMGISSL---FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105 (481)
Q Consensus 34 ~l~~~l~~~~~-----~~~~~~~---~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~l 105 (481)
++.+++.+.+. .+||..| +|+|.+++..++. ++++++.++||+|||++|++|++..+..+. .++
T Consensus 68 al~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l----~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~----~v~ 139 (970)
T PRK12899 68 GVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAM----HKGFITEMQTGEGKTLTAVMPLYLNALTGK----PVH 139 (970)
T ss_pred CCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhc----CCCeEEEeCCCCChHHHHHHHHHHHHhhcC----CeE
Confidence 36666666665 5789888 9999888777665 889999999999999999999998776542 489
Q ss_pred EEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-H
Q 011605 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-M 184 (481)
Q Consensus 106 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~ 184 (481)
||+||+.|+.|..+++..+...+|+++..+.|+.+...+...+ .++|+|+||+.+ .
T Consensus 140 IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y-----------------------~~DIVygTPgRLgf 196 (970)
T PRK12899 140 LVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY-----------------------QCDVVYGTASEFGF 196 (970)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc-----------------------CCCEEEECCChhHH
Confidence 9999999999999999999998999999999998876653221 369999999999 8
Q ss_pred HHHhcCCCccc-------CCccEEEEechhHhhH
Q 011605 185 DHINATRGFTL-------EHLCYLVVDETDRLLR 211 (481)
Q Consensus 185 ~~l~~~~~~~~-------~~~~~iVvDE~H~l~~ 211 (481)
+++.... +.+ ..+.++|+|||+.++-
T Consensus 197 DyLrd~~-~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 197 DYLRDNS-IATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HHhhCCC-CCcCHHHhhcccccEEEEechhhhhh
Confidence 8887642 222 3668999999998644
No 102
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.92 E-value=5.1e-23 Score=198.13 Aligned_cols=360 Identities=18% Similarity=0.154 Sum_probs=227.6
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
-.+++||.+-+..++.....|-+.|+...+|.|||+..+.. +..+..-..-...-||++|...|.. |..+++++++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~-l~yl~~~~~~~GPfLVi~P~StL~N-W~~Ef~rf~P-- 241 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISL-LGYLKGRKGIPGPFLVIAPKSTLDN-WMNEFKRFTP-- 241 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHH-HHHHHHhcCCCCCeEEEeeHhhHHH-HHHHHHHhCC--
Confidence 37999999999888876667888999999999999987653 3334332222336899999988776 9999999998
Q ss_pred CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
++++..++|+.........-. ......+|+|||+++.++--.. +.--..+++||||+|+
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~------------------~~~~~fdV~iTsYEi~i~dk~~---lk~~~W~ylvIDEaHR 300 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDI------------------MLPGRFDVCITSYEIAIKDKSF---LKKFNWRYLVIDEAHR 300 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHh------------------hccCCCceEeehHHHHHhhHHH---HhcCCceEEEechhhh
Confidence 678889999874333322111 1123679999999998765322 1222478999999998
Q ss_pred hhHHHH----------------------hhhHHHHHHhccccccccccc------cccccccccc-----c----hhhhh
Q 011605 209 LLREAY----------------------QAWLPTVLQLTRSDNENRFSD------ASTFLPSAFG-----S----LKTIR 251 (481)
Q Consensus 209 l~~~~~----------------------~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~-----~----~~~~~ 251 (481)
+-+... .+.+..+.+++.-.-++.|+. |......... . +.++.
T Consensus 301 iKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFl 380 (971)
T KOG0385|consen 301 IKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFL 380 (971)
T ss_pred hcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHH
Confidence 755321 122233333332222333332 2222110000 0 01111
Q ss_pred ccccccccCC-CCCcceeeeeeceeec----------cC-----------------chhhhcccccCCceeecCCccccC
Q 011605 252 RCGVERGFKD-KPYPRLVKMVLSATLT----------QD-----------------PNKLAQLDLHHPLFLTTGETRYKL 303 (481)
Q Consensus 252 ~~~~~~~~~~-~~~~~~~~v~~sat~~----------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~ 303 (481)
.......... .+..+...+..+-+.. .+ +...++..+.+|+.+......
T Consensus 381 LRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg--- 457 (971)
T KOG0385|consen 381 LRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG--- 457 (971)
T ss_pred HHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC---
Confidence 1111111111 1111111111111111 00 111222334455555442211
Q ss_pred cccccccccccCCCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHH
Q 011605 304 PERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (481)
Q Consensus 304 ~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f 381 (481)
..+..-.....++.|...|..++... .++++|||.+-.....-+..+.--.+ +....+.|.++.++|...++.|
T Consensus 458 -~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~---y~ycRiDGSt~~eeR~~aI~~f 533 (971)
T KOG0385|consen 458 -PPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRG---YEYCRLDGSTSHEEREDAIEAF 533 (971)
T ss_pred -CCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcC---ceeEeecCCCCcHHHHHHHHhc
Confidence 12222233445667777777777654 58899999998888877777765545 7889999999999999999999
Q ss_pred hcC---CceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEee
Q 011605 382 REG---KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440 (481)
Q Consensus 382 ~~g---~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 440 (481)
... .+-+|++|.+.+.|+|+..++.||.|+..|+|+.-+|..-||.|.|+...|.+|=.
T Consensus 534 n~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RL 595 (971)
T KOG0385|consen 534 NAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRL 595 (971)
T ss_pred CCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEE
Confidence 854 45678999999999999999999999999999999999999999999866666633
No 103
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.92 E-value=2.7e-23 Score=203.32 Aligned_cols=338 Identities=17% Similarity=0.146 Sum_probs=195.7
Q ss_pred CCccchhhHHhHHhhhCCCCCCCC-EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011605 48 ISSLFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~-~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (481)
-..+|.||..|+..+.+++..|++ ++++|+||+|||.+++. ++..|.+. ..-.++|+++-+++|+.|....+..+.+
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~-~~~KRVLFLaDR~~Lv~QA~~af~~~~P 240 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKS-GWVKRVLFLADRNALVDQAYGAFEDFLP 240 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhc-chhheeeEEechHHHHHHHHHHHHHhCC
Confidence 357999999999999999887755 99999999999999855 55666554 2345899999999999999989888876
Q ss_pred ccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcC----CCcccCCccEEE
Q 011605 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLV 202 (481)
Q Consensus 127 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~----~~~~~~~~~~iV 202 (481)
. +-.+-.+.+... ...++|.++|++.+....... +.+....|++||
T Consensus 241 ~-~~~~n~i~~~~~-----------------------------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIv 290 (875)
T COG4096 241 F-GTKMNKIEDKKG-----------------------------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIV 290 (875)
T ss_pred C-ccceeeeecccC-----------------------------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEE
Confidence 5 222222222211 124599999999998876553 123455699999
Q ss_pred EechhHhhHHHHhhhHHHHHHhc----ccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeecc
Q 011605 203 VDETDRLLREAYQAWLPTVLQLT----RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278 (481)
Q Consensus 203 vDE~H~l~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~ 278 (481)
+||||+-.-.-+...+..+-+.. +.+.......... ++. ..++..++++....+..+-..+.+-.---...
T Consensus 291 IDEaHRgi~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~----~F~-g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~ 365 (875)
T COG4096 291 IDEAHRGIYSEWSSILDYFDAATQGLTATPKETIDRSTYG----FFN-GEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDL 365 (875)
T ss_pred echhhhhHHhhhHHHHHHHHHHHHhhccCccccccccccc----ccC-CCcceeecHHHHhhccccCCCCceEEeeeccc
Confidence 99999855444443333322221 1111110001111 111 12223333333333322211121111000000
Q ss_pred Cchhhhcc----cccCCceeecCCccccCcccccccccccCCCchH----HHHHHHHHh--cC--CCeEEEEecchhhHH
Q 011605 279 DPNKLAQL----DLHHPLFLTTGETRYKLPERLESYKLICESKLKP----LYLVALLQS--LG--EEKCIVFTSSVESTH 346 (481)
Q Consensus 279 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~----~~l~~~l~~--~~--~~~~lVf~~s~~~~~ 346 (481)
........ ......+. ... ....... +.....-.... ..+.+.+.. .. -+|+||||.+..||+
T Consensus 366 ~G~~~~~~serek~~g~~i~-~dd---~~~~~~d-~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe 440 (875)
T COG4096 366 DGWKPDAGSEREKLQGEAID-EDD---QNFEARD-FDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAE 440 (875)
T ss_pred cCcCcCccchhhhhhccccC-ccc---ccccccc-cchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHH
Confidence 00000000 00000000 000 0000000 00000001111 223333333 11 468999999999999
Q ss_pred HHHHHHhhccccc--eeEEEcccccChHHHHHHHHHHhc-C-CceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHH
Q 011605 347 RLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFRE-G-KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHR 422 (481)
Q Consensus 347 ~l~~~L~~~~~~~--~~~~~~~~~~~~~~r~~~~~~f~~-g-~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~ 422 (481)
.+.+.|.+..... .-+..+.|.. ++-...++.|.. . -.+|.|+.+++..|+|+|.+.++|++..-.|...|.||
T Consensus 441 ~i~~~~~~~ype~~~~~a~~IT~d~--~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QM 518 (875)
T COG4096 441 RIREALVNEYPEYNGRYAMKITGDA--EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQM 518 (875)
T ss_pred HHHHHHHHhCccccCceEEEEeccc--hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHH
Confidence 9999998764322 2244455543 345566777764 3 35788888999999999999999999999999999999
Q ss_pred hhhcccC
Q 011605 423 AGRTARA 429 (481)
Q Consensus 423 ~GR~~R~ 429 (481)
+||+.|.
T Consensus 519 vGRGTRl 525 (875)
T COG4096 519 VGRGTRL 525 (875)
T ss_pred hcCcccc
Confidence 9999993
No 104
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.92 E-value=2.3e-22 Score=211.86 Aligned_cols=173 Identities=19% Similarity=0.246 Sum_probs=119.6
Q ss_pred CCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHH
Q 011605 33 PCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 33 ~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (481)
+.+++.+.+.+...|| ++|+.|.+++..+...+..++++++.||||+|||++|++|++..... +.+++|.|||++
T Consensus 229 ~~~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~----~~~vvi~t~t~~ 303 (850)
T TIGR01407 229 NTLSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT----EKPVVISTNTKV 303 (850)
T ss_pred ccccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC----CCeEEEEeCcHH
Confidence 4566788888888898 69999999988888777778899999999999999999998776552 348999999999
Q ss_pred HHHHHHH-HHHHhccccC--ceEEEeccCcchHHHH--HHHhhccc--------------------------c-------
Q 011605 113 LALQVKD-VFAAIAPAVG--LSVGLAVGQSSIADEI--SELIKRPK--------------------------L------- 154 (481)
Q Consensus 113 L~~q~~~-~~~~~~~~~~--~~~~~~~g~~~~~~~~--~~~~~~~~--------------------------~------- 154 (481)
|..|+.. ++..+.+.++ ++++.+.|...+.... ........ .
T Consensus 304 Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~ 383 (850)
T TIGR01407 304 LQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNK 383 (850)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcch
Confidence 9999865 5666655444 7888888776541110 00000000 0
Q ss_pred --------c--cCccC-----ChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhH
Q 011605 155 --------E--AGICY-----DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (481)
Q Consensus 155 --------~--~~~~~-----~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~ 211 (481)
. .+..+ -+....+.....++|+|+++..++..+..... .+...+++||||||++.+
T Consensus 384 ~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~-ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 384 MFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPE-LFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred hhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccc-cCCCCCEEEEECcchHHH
Confidence 0 00000 02222344455689999999999887644222 245568999999999865
No 105
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.2e-22 Score=186.90 Aligned_cols=198 Identities=18% Similarity=0.189 Sum_probs=142.5
Q ss_pred ceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHh--cCCCeEEEEecchh
Q 011605 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE 343 (481)
Q Consensus 266 ~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~ 343 (481)
..++|+.|||+.+.-...........++-......+. ..+.+...+..-|...++. ..++++||.+-+.+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~--------ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPE--------IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEeecCCCCCCCc--------eeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 3478999999965433333222222222222222211 1122233333333333322 35789999999999
Q ss_pred hHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCC-----CChhH
Q 011605 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-----AYIKT 418 (481)
Q Consensus 344 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~-----~s~~~ 418 (481)
.|+.+.++|.+.| +.+.++|++.+.-||.++++.++.|.++|||+.+.+-+|+|+|.+..|.+++.. .|-.+
T Consensus 458 mAEdLT~Yl~e~g---ikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~S 534 (663)
T COG0556 458 MAEDLTEYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERS 534 (663)
T ss_pred HHHHHHHHHHhcC---ceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccch
Confidence 9999999999988 999999999999999999999999999999999999999999999999988754 57889
Q ss_pred HHHHhhhcccCCCCccEEEEeecchH----------HHHHHHHHHhcCCCCCCCCCCchhhhhhhcc
Q 011605 419 YIHRAGRTARAGQLGRCFTLLHKDEV----------KRFKKLLQKADNDSCPIHSIPSSLIESLRPV 475 (481)
Q Consensus 419 ~~Q~~GR~~R~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (481)
++|.+|||.|. -.|.++.|.++-.. .+-+..+..+++++..|.++.-.+.+.+...
T Consensus 535 LIQtIGRAARN-~~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K~i~d~l~~~ 600 (663)
T COG0556 535 LIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIKKKIRDILDGE 600 (663)
T ss_pred HHHHHHHHhhc-cCCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhhhhh
Confidence 99999999995 47999999876322 2334445677788887777766665555443
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=3.2e-23 Score=213.73 Aligned_cols=346 Identities=16% Similarity=0.128 Sum_probs=209.1
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
...+++|.+++..+......+..+++.||||+|||.+.+..+...+........+++++.|++.+.+++++.+.++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 34589999998887765433337889999999999999888877766632356689999999999999999999887654
Q ss_pred CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcc-c--CCccEEEEec
Q 011605 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT-L--EHLCYLVVDE 205 (481)
Q Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~-~--~~~~~iVvDE 205 (481)
+......+|.....-...... ...+...........-..+.++|+.............. + -..+++|+||
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~-------~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQ-------DILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred ccccccccccccchhhhcccc-------ccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 433332233332211110000 00000000000111112344555544444222212111 1 1247899999
Q ss_pred hhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhc
Q 011605 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (481)
Q Consensus 206 ~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~ 285 (481)
+|.+........+..++..... .+.+++++|||++......+.
T Consensus 347 ~h~~~~~~~~~~l~~~i~~l~~-------------------------------------~g~~ill~SATlP~~~~~~l~ 389 (733)
T COG1203 347 VHLYADETMLAALLALLEALAE-------------------------------------AGVPVLLMSATLPPFLKEKLK 389 (733)
T ss_pred HHhhcccchHHHHHHHHHHHHh-------------------------------------CCCCEEEEecCCCHHHHHHHH
Confidence 9987655333333333333322 244799999999987766555
Q ss_pred ccccCCceeecCCc-cccCcccccccc--cccCCCchHHHHHHHHH-hcCCCeEEEEecchhhHHHHHHHHhhcccccee
Q 011605 286 LDLHHPLFLTTGET-RYKLPERLESYK--LICESKLKPLYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361 (481)
Q Consensus 286 ~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~k~~~l~~~l~-~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~ 361 (481)
.............. .....+...... ................. ...+.+++|.|||+..|.++++.|+..+. .
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~---~ 466 (733)
T COG1203 390 KALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP---K 466 (733)
T ss_pred HHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC---C
Confidence 44433222211110 000000000000 00000000011111111 12467999999999999999999998763 7
Q ss_pred EEEcccccChHHHHHHHHHHh----cCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCC--CCccE
Q 011605 362 IKEYSGLQRQSVRSKTLKAFR----EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG--QLGRC 435 (481)
Q Consensus 362 ~~~~~~~~~~~~r~~~~~~f~----~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~--~~g~~ 435 (481)
+.++||.+...+|.++++.+. .++..|+|+|++++.|+|+. .+.+|---. ...+++||+||++|.| ..|..
T Consensus 467 v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe~a--PidSLIQR~GRv~R~g~~~~~~~ 543 (733)
T COG1203 467 VLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITELA--PIDSLIQRAGRVNRHGKKENGKI 543 (733)
T ss_pred EEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeecCC--CHHHHHHHHHHHhhcccccCCce
Confidence 999999999999998888655 46789999999999999995 566653333 4889999999999999 45788
Q ss_pred EEEeecchH
Q 011605 436 FTLLHKDEV 444 (481)
Q Consensus 436 ~~~~~~~~~ 444 (481)
+++......
T Consensus 544 ~v~~~~~~~ 552 (733)
T COG1203 544 YVYNDEERG 552 (733)
T ss_pred eEeecccCC
Confidence 777665433
No 107
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.90 E-value=5.4e-22 Score=202.60 Aligned_cols=333 Identities=15% Similarity=0.121 Sum_probs=193.3
Q ss_pred ccchhhHHhHHhhhCCCCC------CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHH
Q 011605 50 SLFPVQVAVWQETIGPGLF------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~------~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
.++.+|.+|+..++..+.. .+..+++++||||||++++..+...+ .. ...+++|||+|+..|..|+.+.+..
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~-~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL-LKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh-cCCCeEEEEECcHHHHHHHHHHHHh
Confidence 4889999999998876544 35699999999999998766554433 22 3567899999999999999999998
Q ss_pred hccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhc-CCCcEEEeCchHHHHHHhcC-CCcccCCc-cE
Q 011605 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINAT-RGFTLEHL-CY 200 (481)
Q Consensus 124 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~T~~~l~~~l~~~-~~~~~~~~-~~ 200 (481)
++.. .. .+..+. .... ..+. ....|+|+|.+++.+.+... ........ .+
T Consensus 316 ~~~~----~~--~~~~s~-~~L~--------------------~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~l 368 (667)
T TIGR00348 316 LQKD----CA--ERIESI-AELK--------------------RLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVV 368 (667)
T ss_pred hCCC----CC--cccCCH-HHHH--------------------HHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEE
Confidence 8531 00 111111 1111 1111 23589999999998644321 11111122 38
Q ss_pred EEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCc
Q 011605 201 LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (481)
Q Consensus 201 iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~ 280 (481)
||+||||+.....+...+.. .+ |....+++||||....
T Consensus 369 vIvDEaHrs~~~~~~~~l~~---~~---------------------------------------p~a~~lGfTaTP~~~~ 406 (667)
T TIGR00348 369 VIFDEAHRSQYGELAKNLKK---AL---------------------------------------KNASFFGFTGTPIFKK 406 (667)
T ss_pred EEEEcCccccchHHHHHHHh---hC---------------------------------------CCCcEEEEeCCCcccc
Confidence 99999998654444333322 11 2235677777775321
Q ss_pred hh----hhc-----------------ccccCCceeecCCccccC-----cccccccccccC-------------------
Q 011605 281 NK----LAQ-----------------LDLHHPLFLTTGETRYKL-----PERLESYKLICE------------------- 315 (481)
Q Consensus 281 ~~----~~~-----------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~------------------- 315 (481)
.. ... .+...++........... ............
T Consensus 407 d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 486 (667)
T TIGR00348 407 DRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTK 486 (667)
T ss_pred cccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Confidence 10 000 000001100000000000 000000000000
Q ss_pred ----CCchHHHH-HHHHHhc------CCCeEEEEecchhhHHHHHHHHhhccccc--eeEEEcccccChH----------
Q 011605 316 ----SKLKPLYL-VALLQSL------GEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQS---------- 372 (481)
Q Consensus 316 ----~~~k~~~l-~~~l~~~------~~~~~lVf~~s~~~~~~l~~~L~~~~~~~--~~~~~~~~~~~~~---------- 372 (481)
.......+ ..++... ...+++|||.++.+|..+.+.|.+..... .....+++..+..
T Consensus 487 ~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~ 566 (667)
T TIGR00348 487 KILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHI 566 (667)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHh
Confidence 00000111 1111111 24799999999999999999887653221 2334444443322
Q ss_pred -----------HHHHHHHHHhc-CCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccC-CC-CccEEEE
Q 011605 373 -----------VRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQ-LGRCFTL 438 (481)
Q Consensus 373 -----------~r~~~~~~f~~-g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~-~~-~g~~~~~ 438 (481)
....++++|++ +..+|||+++++.+|+|.|.+..++...+..+. .++|++||+.|. .. +..++++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~Iv 645 (667)
T TIGR00348 567 RTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIV 645 (667)
T ss_pred ccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEE
Confidence 22468888976 688999999999999999999999888876654 589999999994 32 3445666
Q ss_pred eecchHHHHHHHHHHh
Q 011605 439 LHKDEVKRFKKLLQKA 454 (481)
Q Consensus 439 ~~~~~~~~~~~~~~~~ 454 (481)
...+..+.+.+-+...
T Consensus 646 Dy~g~~~~l~~Al~~y 661 (667)
T TIGR00348 646 DYRGLEKSLIDALSLY 661 (667)
T ss_pred ECcChHHHHHHHHHHh
Confidence 5666666666655544
No 108
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=3.1e-22 Score=199.79 Aligned_cols=334 Identities=19% Similarity=0.196 Sum_probs=209.9
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
..+++-|..++..+..........++.+.||||||.+|+-.+...+..++ .+|+++|-.+|-.|+...++..+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk----qvLvLVPEI~Ltpq~~~rf~~rF--- 269 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK----QVLVLVPEIALTPQLLARFKARF--- 269 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC----EEEEEeccccchHHHHHHHHHHh---
Confidence 36788899999888876522356899999999999999888877777764 79999999999999988888775
Q ss_pred CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhc-CCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechh
Q 011605 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H 207 (481)
|.+++.++++.+..+.... |+.+. ....|+|+|-..+ ..+|.++.+||+||-|
T Consensus 270 g~~v~vlHS~Ls~~er~~~------------------W~~~~~G~~~vVIGtRSAl--------F~Pf~~LGLIIvDEEH 323 (730)
T COG1198 270 GAKVAVLHSGLSPGERYRV------------------WRRARRGEARVVIGTRSAL--------FLPFKNLGLIIVDEEH 323 (730)
T ss_pred CCChhhhcccCChHHHHHH------------------HHHHhcCCceEEEEechhh--------cCchhhccEEEEeccc
Confidence 6788899998887776443 33444 4689999994433 2457889999999999
Q ss_pred HhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhccc
Q 011605 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 287 (481)
Q Consensus 208 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~ 287 (481)
.- ++. +....++..............+++|+-|||++-+.......+
T Consensus 324 D~---sYK------------------------------q~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g 370 (730)
T COG1198 324 DS---SYK------------------------------QEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAESG 370 (730)
T ss_pred cc---ccc------------------------------CCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcC
Confidence 42 110 000000000000001111145689999999975544444333
Q ss_pred ccCCceeecCCccccCcccccccccccCCCch----HHHHHHHHHhc--CCCeEEEEecchhh-----------------
Q 011605 288 LHHPLFLTTGETRYKLPERLESYKLICESKLK----PLYLVALLQSL--GEEKCIVFTSSVES----------------- 344 (481)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~~l~~~--~~~~~lVf~~s~~~----------------- 344 (481)
......+...... .................. ...+.+.+++. .++++|+|.|.+-.
T Consensus 371 ~y~~~~L~~R~~~-a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~ 449 (730)
T COG1198 371 KYKLLRLTNRAGR-ARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPN 449 (730)
T ss_pred ceEEEEccccccc-cCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCC
Confidence 2222222222221 111111111111111111 12333333322 47788888887222
Q ss_pred -------------------------------------------HHHHHHHHhhccccceeEEEcccccCh--HHHHHHHH
Q 011605 345 -------------------------------------------THRLCTLLNHFGELRIKIKEYSGLQRQ--SVRSKTLK 379 (481)
Q Consensus 345 -------------------------------------------~~~l~~~L~~~~~~~~~~~~~~~~~~~--~~r~~~~~ 379 (481)
++++.+.|+.+.+ +..+..+.++... ..-+..++
T Consensus 450 Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP-~~rv~r~d~Dtt~~k~~~~~~l~ 528 (730)
T COG1198 450 CDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFP-GARIIRIDSDTTRRKGALEDLLD 528 (730)
T ss_pred CCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCC-CCcEEEEccccccchhhHHHHHH
Confidence 3333333333221 1344555444433 23457799
Q ss_pred HHhcCCceEEEEccccccCCCCCCCcEEEEcCCCC------------ChhHHHHHhhhcccCCCCccEEEEeecchHHHH
Q 011605 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------------YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447 (481)
Q Consensus 380 ~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 447 (481)
.|.+|+.+|||+|+|+..|.|+|+++.|...+... ..+.+.|..||+||.+..|.+++-....+-+.+
T Consensus 529 ~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i 608 (730)
T COG1198 529 QFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAI 608 (730)
T ss_pred HHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHH
Confidence 99999999999999999999999999877654331 144677999999999999999998776655444
Q ss_pred HHH
Q 011605 448 KKL 450 (481)
Q Consensus 448 ~~~ 450 (481)
+.+
T Consensus 609 ~~~ 611 (730)
T COG1198 609 QAL 611 (730)
T ss_pred HHH
Confidence 443
No 109
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=6e-22 Score=196.98 Aligned_cols=320 Identities=22% Similarity=0.237 Sum_probs=194.5
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
.|| .|+..|.-= ...+..|+++.+.||||.|||...++..+.... .+.+++|++||..|+.|..+.+.+++
T Consensus 79 ~G~-~~ws~QR~W----akR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~----kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 79 TGF-RPWSAQRVW----AKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK----KGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred hCC-CchHHHHHH----HHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh----cCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 466 999999544 444456999999999999999865443333222 34589999999999999999999998
Q ss_pred cccC-ceEEE-eccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEE
Q 011605 126 PAVG-LSVGL-AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 126 ~~~~-~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVv 203 (481)
...+ ..+.. +++..+...+...+. +-...+.+|+|+|.+.+....... .-.+|++|++
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le-----------------~i~~gdfdIlitTs~FL~k~~e~L---~~~kFdfifV 209 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALE-----------------RIESGDFDILITTSQFLSKRFEEL---SKLKFDFIFV 209 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHH-----------------HHhcCCccEEEEeHHHHHhhHHHh---cccCCCEEEE
Confidence 7665 33333 455544444332222 122346899999999988777662 2246999999
Q ss_pred echhHhhHHHHhhhHHHHHHhccccccccccccc-ccc------cccccchhhhhccccccccCCCCCcceeeeeeceee
Q 011605 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS-TFL------PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276 (481)
Q Consensus 204 DE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~ 276 (481)
|+++.++..+ ..+..++.++.-......+.+. ..+ .+..+...-+.+.. +.............++.|||.
T Consensus 210 DDVDA~Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~-e~~~~~~r~k~g~LvvsSATg 286 (1187)
T COG1110 210 DDVDAILKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREV-EREREKKRRKLGILVVSSATG 286 (1187)
T ss_pred ccHHHHHhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HHHHHHhccCCceEEEeeccC
Confidence 9999987654 4444444443211100000000 000 00000000000000 000000111233678999998
Q ss_pred ccCchh-hhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecc---hhhHHHHHHHH
Q 011605 277 TQDPNK-LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS---VESTHRLCTLL 352 (481)
Q Consensus 277 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s---~~~~~~l~~~L 352 (481)
.+.... .+...+. -+..+.....+ ..+.+..... .-.+.+.++++... ...|||++. .+.+++++++|
T Consensus 287 ~~rg~R~~LfReLl---gFevG~~~~~L-RNIvD~y~~~---~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~L 358 (1187)
T COG1110 287 KPRGSRLKLFRELL---GFEVGSGGEGL-RNIVDIYVES---ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYL 358 (1187)
T ss_pred CCCCchHHHHHHHh---CCccCccchhh-hheeeeeccC---ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHH
Confidence 655422 1111111 11111111111 1111111111 44555667777774 478999999 99999999999
Q ss_pred hhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEc----cccccCCCCCC-CcEEEEcCCC
Q 011605 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYDKP 413 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t----~~l~~Gvdl~~-~~~Vi~~~~~ 413 (481)
+.+| +++..+|+. +...++.|..|+.++||++ ..+.+|+|+|. ++.+|+++.|
T Consensus 359 r~~G---i~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 359 RSHG---INAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HhcC---ceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9888 899988874 3678999999999999975 56889999996 7888887766
No 110
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=2.7e-22 Score=203.19 Aligned_cols=310 Identities=20% Similarity=0.233 Sum_probs=198.1
Q ss_pred hhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcch
Q 011605 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141 (481)
Q Consensus 62 ~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 141 (481)
++..+..++-+++.++||+|||...-..+++.-. ..+.++.+.=|.+--+...++.+.+- ++-+++..+|..-.
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~---~~~g~I~~tQPRRlAArsvA~RvAee---l~~~~G~~VGY~iR 131 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL---GIAGKIGCTQPRRLAARSVAERVAEE---LGEKLGETVGYSIR 131 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc---ccCCeEEecCchHHHHHHHHHHHHHH---hCCCcCceeeEEEE
Confidence 3333334777999999999999864433343222 22335666668875555555544333 23333333333221
Q ss_pred HHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHH
Q 011605 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221 (481)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l 221 (481)
.+. .......|-++|.+.|.+.+.... .++.+++||+||+|.=. -..+.+-.+
T Consensus 132 fe~-----------------------~~s~~Trik~mTdGiLlrei~~D~--~Ls~ys~vIiDEaHERS--l~tDilLgl 184 (845)
T COG1643 132 FES-----------------------KVSPRTRIKVMTDGILLREIQNDP--LLSGYSVVIIDEAHERS--LNTDILLGL 184 (845)
T ss_pred eec-----------------------cCCCCceeEEeccHHHHHHHhhCc--ccccCCEEEEcchhhhh--HHHHHHHHH
Confidence 111 112345899999999999887643 48899999999999621 112222222
Q ss_pred HHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccc
Q 011605 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301 (481)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (481)
+..+.... .+.+++|+||||+. ...+...+..-|++..... .+
T Consensus 185 lk~~~~~r----------------------------------r~DLKiIimSATld--~~rfs~~f~~apvi~i~GR-~f 227 (845)
T COG1643 185 LKDLLARR----------------------------------RDDLKLIIMSATLD--AERFSAYFGNAPVIEIEGR-TY 227 (845)
T ss_pred HHHHHhhc----------------------------------CCCceEEEEecccC--HHHHHHHcCCCCEEEecCC-cc
Confidence 22221111 13478999999994 3444444433444443332 22
Q ss_pred cCcccccccccccCCCc-hHHHHHHHHH---hcCCCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHH
Q 011605 302 KLPERLESYKLICESKL-KPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSK 376 (481)
Q Consensus 302 ~~~~~~~~~~~~~~~~~-k~~~l~~~l~---~~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~ 376 (481)
+....+ ......+. -...+...+. ....+.+|||.+...+.+..++.|.+.. .....+..+||.++.++..+
T Consensus 228 PVei~Y---~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r 304 (845)
T COG1643 228 PVEIRY---LPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR 304 (845)
T ss_pred ceEEEe---cCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh
Confidence 222211 11111222 2223333332 2357889999999999999999998721 13467889999999999999
Q ss_pred HHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCC------------------CCChhHHHHHhhhcccCCCCccEEEE
Q 011605 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQLGRCFTL 438 (481)
Q Consensus 377 ~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~~~~g~~~~~ 438 (481)
+++.-..|+.+|+++|++.+.++.+|+++.||.-+. +-|.++..||.|||||.+ +|.||-+
T Consensus 305 vF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRL 383 (845)
T COG1643 305 VFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRL 383 (845)
T ss_pred hcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEe
Confidence 888877888889999999999999999999998542 246778899999999984 8999999
Q ss_pred eecchHH
Q 011605 439 LHKDEVK 445 (481)
Q Consensus 439 ~~~~~~~ 445 (481)
|++.+..
T Consensus 384 yse~~~~ 390 (845)
T COG1643 384 YSEEDFL 390 (845)
T ss_pred cCHHHHH
Confidence 9986553
No 111
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.89 E-value=3.5e-22 Score=171.03 Aligned_cols=148 Identities=33% Similarity=0.526 Sum_probs=121.6
Q ss_pred chhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCce
Q 011605 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131 (481)
Q Consensus 52 ~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 131 (481)
+++|.+++..+.. ++++++.+|||+|||++++.+++..+..+ ...++++++|+++|+.|+.+.+..++...+++
T Consensus 1 t~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~--~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG--KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT--SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC--CCceEEEEeecccccccccccccccccccccc
Confidence 5799999999885 88999999999999999999999888775 23489999999999999999999998877788
Q ss_pred EEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhH
Q 011605 132 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (481)
Q Consensus 132 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~ 211 (481)
+..++++......... .+..+++|+|+||+++.+.+..... .+.++++||+||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~--------------------~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 75 VVLLHGGQSISEDQRE--------------------VLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp EEEESTTSCHHHHHHH--------------------HHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHH
T ss_pred cccccccccccccccc--------------------cccccccccccCcchhhcccccccc-ccccceeeccCccccccc
Confidence 8888888774422222 1224579999999999999987443 667799999999999988
Q ss_pred HHHhhhHHHHHHhcc
Q 011605 212 EAYQAWLPTVLQLTR 226 (481)
Q Consensus 212 ~~~~~~~~~l~~~~~ 226 (481)
+.+...+..+.....
T Consensus 134 ~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 134 ETFRAMLKSILRRLK 148 (169)
T ss_dssp TTHHHHHHHHHHHSH
T ss_pred ccHHHHHHHHHHHhc
Confidence 777777777777754
No 112
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.89 E-value=1.5e-22 Score=204.05 Aligned_cols=374 Identities=19% Similarity=0.199 Sum_probs=249.1
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
.++|.||.+-+..++..-..++++|+...+|.|||+..+.. +..+.....-....|+|+|...+.. |.+++..+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~f-l~~l~~~~~~~gpflvvvplst~~~-W~~ef~~w~--- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITF-LSYLFHSLQIHGPFLVVVPLSTITA-WEREFETWT--- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHH-HHHHHHhhhccCCeEEEeehhhhHH-HHHHHHHHh---
Confidence 68999999998888776667899999999999999886543 3344333222335999999977665 999999987
Q ss_pred CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
++++.++.|......-..++.-..... .-.-.++++++|++.++.--.. +.--.+.+++|||||.
T Consensus 444 ~mn~i~y~g~~~sr~~i~~ye~~~~~~------------~~~lkf~~lltTye~~LkDk~~---L~~i~w~~~~vDeahr 508 (1373)
T KOG0384|consen 444 DMNVIVYHGNLESRQLIRQYEFYHSSN------------TKKLKFNALLTTYEIVLKDKAE---LSKIPWRYLLVDEAHR 508 (1373)
T ss_pred hhceeeeecchhHHHHHHHHHheecCC------------ccccccceeehhhHHHhccHhh---hccCCcceeeecHHhh
Confidence 688999999987665554433111000 0001368999999998664333 2223467999999998
Q ss_pred hhHHH----------------------HhhhHHHHHHhccccccccccccccccccc-------ccch----hhhhcccc
Q 011605 209 LLREA----------------------YQAWLPTVLQLTRSDNENRFSDASTFLPSA-------FGSL----KTIRRCGV 255 (481)
Q Consensus 209 l~~~~----------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~ 255 (481)
+-+.. ..+.+..+.+++.-.-+..|..+..+.... +..+ .+......
T Consensus 509 LkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~ 588 (1373)
T KOG0384|consen 509 LKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRL 588 (1373)
T ss_pred cCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHH
Confidence 75431 234455666666555666666665555443 1111 11111112
Q ss_pred ccccCCCCCcceee---eeece--------eeccC-----------------chhhhcccccCCceeecCCccccCcc--
Q 011605 256 ERGFKDKPYPRLVK---MVLSA--------TLTQD-----------------PNKLAQLDLHHPLFLTTGETRYKLPE-- 305 (481)
Q Consensus 256 ~~~~~~~~~~~~~~---v~~sa--------t~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-- 305 (481)
.+.+...+-++.-. |-+|+ .+..+ +...+...+.+|+.+........-..
T Consensus 589 kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~ 668 (1373)
T KOG0384|consen 589 KKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRD 668 (1373)
T ss_pred HhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhh
Confidence 22222222222111 11121 11111 11122233445555544333211111
Q ss_pred --cccccccccCCCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHH
Q 011605 306 --RLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (481)
Q Consensus 306 --~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f 381 (481)
.-..+..+..+..|+..|..+|... .++++|||.+-+....-++++|...+ ++.-.+.|++..+-|...++.|
T Consensus 669 ~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~---ypfQRLDGsvrgelRq~AIDhF 745 (1373)
T KOG0384|consen 669 KMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRG---YPFQRLDGSVRGELRQQAIDHF 745 (1373)
T ss_pred cchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcC---CcceeccCCcchHHHHHHHHhc
Confidence 1123445556677777777777655 46899999999999999999999877 8888999999999999999999
Q ss_pred hc---CCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCC--ccEEEEeecchHH
Q 011605 382 RE---GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVK 445 (481)
Q Consensus 382 ~~---g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~ 445 (481)
.+ ..+-+|++|.+.+.|||+..++.||+|+..|+|++=+|...||.|.||. -.+|-+++++.++
T Consensus 746 nap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvE 814 (1373)
T KOG0384|consen 746 NAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVE 814 (1373)
T ss_pred cCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchH
Confidence 84 4678999999999999999999999999999999999999999999998 5566667776543
No 113
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.88 E-value=2.3e-20 Score=193.77 Aligned_cols=403 Identities=17% Similarity=0.153 Sum_probs=217.7
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHH-HHHHHHh
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV-KDVFAAI 124 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~-~~~~~~~ 124 (481)
-|| ++|+-|.+++..+...+..++.+++.|+||+|||++|++|++... .+.+++|++||++|++|. .+.+..+
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 366 899999999998888887788899999999999999999977642 345899999999999999 4678777
Q ss_pred ccccCceEEEeccCcchHHHH--HHHhhccc------------------------cc-------------------cCcc
Q 011605 125 APAVGLSVGLAVGQSSIADEI--SELIKRPK------------------------LE-------------------AGIC 159 (481)
Q Consensus 125 ~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~------------------------~~-------------------~~~~ 159 (481)
.+.+++++..+.|...+-... ......+. .+ .+..
T Consensus 316 ~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~ 395 (820)
T PRK07246 316 QEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQS 395 (820)
T ss_pred HHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCC
Confidence 777788887777776532111 11000000 00 0000
Q ss_pred CC--hh---hHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHH--hhh---HHHHHHhcc---
Q 011605 160 YD--PE---DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY--QAW---LPTVLQLTR--- 226 (481)
Q Consensus 160 ~~--~~---~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~--~~~---~~~l~~~~~--- 226 (481)
|. .. ...+.....++|+|+++..|+..+.... .+...+++||||||++.+... ... +..+...+.
T Consensus 396 cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (820)
T PRK07246 396 SLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKAL 473 (820)
T ss_pred CCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHH
Confidence 10 00 1112223468899999998887664432 256789999999999764310 000 000000000
Q ss_pred ----------------cccc----ccc------------cccccc---cc-ccccchhhh-h----ccccccc-------
Q 011605 227 ----------------SDNE----NRF------------SDASTF---LP-SAFGSLKTI-R----RCGVERG------- 258 (481)
Q Consensus 227 ----------------~~~~----~~~------------~~~~~~---~~-~~~~~~~~~-~----~~~~~~~------- 258 (481)
.... ..+ ...... +. ........+ . ..+.+..
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~ 553 (820)
T PRK07246 474 SGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRV 553 (820)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcce
Confidence 0000 000 000000 00 000000000 0 0000000
Q ss_pred ------------cCCCCCcceeeeeeceeecc--CchhhhcccccCCceeecCC--cc---ccCcccccccccccCCCch
Q 011605 259 ------------FKDKPYPRLVKMVLSATLTQ--DPNKLAQLDLHHPLFLTTGE--TR---YKLPERLESYKLICESKLK 319 (481)
Q Consensus 259 ------------~~~~~~~~~~~v~~sat~~~--~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~k 319 (481)
+.........+|++|||+.- ........++.......... .. ..++....... ..+...
T Consensus 554 ~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~--~~~~~~ 631 (820)
T PRK07246 554 TYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVT--ETSDEV 631 (820)
T ss_pred eEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCC--CCChHH
Confidence 00000112357899999962 22222223332111111100 00 00000000000 001111
Q ss_pred -HHHHHHHHHh--cCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccc
Q 011605 320 -PLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (481)
Q Consensus 320 -~~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~ 396 (481)
...+.+.+.. ..+++++|+++|.+..+.+++.|.... ..+ +..|... .+..+++.|++++-.||++|..+.
T Consensus 632 ~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~---~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFw 705 (820)
T PRK07246 632 YAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQ---VSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFW 705 (820)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcC---CcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhh
Confidence 1122222211 247899999999999999999987542 333 4445322 256789999998889999999999
Q ss_pred cCCCCCC--CcEEEEcCCCCC------------------------------hhHHHHHhhhcccCCCCccEEEEeecc-h
Q 011605 397 RGMDVEG--VNNVVNYDKPAY------------------------------IKTYIHRAGRTARAGQLGRCFTLLHKD-E 443 (481)
Q Consensus 397 ~Gvdl~~--~~~Vi~~~~~~s------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~ 443 (481)
+|||+|+ ...||+..+|.. ...+.|.+||..|...+..+++++++. .
T Consensus 706 EGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~ 785 (820)
T PRK07246 706 EGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRIL 785 (820)
T ss_pred CCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCccc
Confidence 9999974 455666665511 224569999999987764344444443 4
Q ss_pred HHHHH-HHHHHhcCCCCCCCCCC
Q 011605 444 VKRFK-KLLQKADNDSCPIHSIP 465 (481)
Q Consensus 444 ~~~~~-~~~~~~~~~~~~~~~~~ 465 (481)
.+.+. .+++.+ +...+....+
T Consensus 786 ~k~Yg~~~l~sL-P~~~~~~~~~ 807 (820)
T PRK07246 786 TKSYGKQILASL-AEEFLISQQN 807 (820)
T ss_pred ccHHHHHHHHhC-CCCCccccCC
Confidence 45554 444444 5444444443
No 114
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.88 E-value=8.1e-22 Score=188.63 Aligned_cols=308 Identities=21% Similarity=0.276 Sum_probs=194.5
Q ss_pred hhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc-cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcc
Q 011605 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS 140 (481)
Q Consensus 62 ~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~ 140 (481)
++..+..++-+++.|.||||||...- +.+...+ ....++-+.-|.+--+...++....- .+-..+..+|..-
T Consensus 59 il~~ve~nqvlIviGeTGsGKSTQip----QyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE---~~~~lG~~VGY~I 131 (674)
T KOG0922|consen 59 ILYAVEDNQVLIVIGETGSGKSTQIP----QYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEE---MGCQLGEEVGYTI 131 (674)
T ss_pred HHHHHHHCCEEEEEcCCCCCccccHh----HHHHhcccccCCcEEeecCchHHHHHHHHHHHHH---hCCCcCceeeeEE
Confidence 34333346779999999999998632 2332222 12234556668877666555543321 1222222222221
Q ss_pred hHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHH
Q 011605 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 220 (481)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~ 220 (481)
..++ .......|.+.|.++|++-+... -.++++++||+||||.- .-.-+.+-.
T Consensus 132 RFed-----------------------~ts~~TrikymTDG~LLRE~l~D--p~LskYsvIIlDEAHER--sl~TDiLlG 184 (674)
T KOG0922|consen 132 RFED-----------------------STSKDTRIKYMTDGMLLREILKD--PLLSKYSVIILDEAHER--SLHTDILLG 184 (674)
T ss_pred Eecc-----------------------cCCCceeEEEecchHHHHHHhcC--CccccccEEEEechhhh--hhHHHHHHH
Confidence 1111 01123489999999998876653 34889999999999961 112233333
Q ss_pred HHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCcc
Q 011605 221 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 300 (481)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (481)
+++.+...+ +.+++|++|||+. ...+...+...++....+..
T Consensus 185 lLKki~~~R-----------------------------------~~LklIimSATld--a~kfS~yF~~a~i~~i~GR~- 226 (674)
T KOG0922|consen 185 LLKKILKKR-----------------------------------PDLKLIIMSATLD--AEKFSEYFNNAPILTIPGRT- 226 (674)
T ss_pred HHHHHHhcC-----------------------------------CCceEEEEeeeec--HHHHHHHhcCCceEeecCCC-
Confidence 333332222 4568999999994 33444444333444333322
Q ss_pred ccCcccccccccccCCCchHHHHHH---HHHhcCCCeEEEEecchhhHHHHHHHHhhccc-----cceeEEEcccccChH
Q 011605 301 YKLPERLESYKLICESKLKPLYLVA---LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-----LRIKIKEYSGLQRQS 372 (481)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~k~~~l~~---~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~-----~~~~~~~~~~~~~~~ 372 (481)
+++... |......+.-.+.+.. +....+.+.+|||.+..++.+..++.|.+... ...-+..+||.++.+
T Consensus 227 fPVei~---y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e 303 (674)
T KOG0922|consen 227 FPVEIL---YLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSE 303 (674)
T ss_pred CceeEE---eccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHH
Confidence 111111 1111112222222322 23334677899999999999999999876421 111356799999999
Q ss_pred HHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcC------------------CCCChhHHHHHhhhcccCCCCcc
Q 011605 373 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD------------------KPAYIKTYIHRAGRTARAGQLGR 434 (481)
Q Consensus 373 ~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~------------------~~~s~~~~~Q~~GR~~R~~~~g~ 434 (481)
+...+++.-..|..+++++|++.+..+.++++..||.-+ -|-|.++-.||.|||||.+ +|+
T Consensus 304 ~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGk 382 (674)
T KOG0922|consen 304 EQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGK 382 (674)
T ss_pred HhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-Cce
Confidence 999999888889999999999999999999999999744 2346778899999999985 899
Q ss_pred EEEEeecchHH
Q 011605 435 CFTLLHKDEVK 445 (481)
Q Consensus 435 ~~~~~~~~~~~ 445 (481)
||-+|++.++.
T Consensus 383 cyRLYte~~~~ 393 (674)
T KOG0922|consen 383 CYRLYTESAYD 393 (674)
T ss_pred EEEeeeHHHHh
Confidence 99999987764
No 115
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=2e-21 Score=188.12 Aligned_cols=369 Identities=18% Similarity=0.139 Sum_probs=225.3
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
+.+.+||++.++.+++-...+...|+-..+|.|||+..+. .+..+.....--.++|||||. .+..||..++.++++.+
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiis-FLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~ 281 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIIS-FLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPF 281 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHH-HHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcce
Confidence 5688999999999887766778899999999999987654 334444431222579999998 67789999999998854
Q ss_pred CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
++..+++..+.... ....+.........+.......|+|+|++.+.-.-.. +.-..++++|+||.|.
T Consensus 282 --rv~ilh~t~s~~r~--------~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~---l~~~~W~y~ILDEGH~ 348 (923)
T KOG0387|consen 282 --RVFILHGTGSGARY--------DASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDD---LLGILWDYVILDEGHR 348 (923)
T ss_pred --EEEEEecCCccccc--------ccchhhhhhhhhheeeecccCcEEEEehhhhcccCcc---cccccccEEEecCccc
Confidence 55666665542110 0000000001111122233457999999887443221 2334578999999997
Q ss_pred hhHHH----------------------HhhhHHHHHHhccccccccccccccccccccc-----c---------------
Q 011605 209 LLREA----------------------YQAWLPTVLQLTRSDNENRFSDASTFLPSAFG-----S--------------- 246 (481)
Q Consensus 209 l~~~~----------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~--------------- 246 (481)
+-++. +.+.+..+..++.-..++..+....|...+.. +
T Consensus 349 IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykc 428 (923)
T KOG0387|consen 349 IRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKC 428 (923)
T ss_pred ccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHH
Confidence 64431 12333333333333333322222222211100 0
Q ss_pred --------hhh-hhccccccccCCCCCcceeeeeeceeeccCchhhhc------------------------ccccCCce
Q 011605 247 --------LKT-IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ------------------------LDLHHPLF 293 (481)
Q Consensus 247 --------~~~-~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~------------------------~~~~~~~~ 293 (481)
.++ +++.--+......+...-++++++-|..+.-....- ..+.+|-.
T Consensus 429 a~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdl 508 (923)
T KOG0387|consen 429 AVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDL 508 (923)
T ss_pred HHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccc
Confidence 000 111111111223444455678888877543111100 01111111
Q ss_pred eecCCccccCcccccccccccCCCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhh-ccccceeEEEcccccC
Q 011605 294 LTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQR 370 (481)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~ 370 (481)
....... ...-..+.-......|...+..++... .+.++|+|..++....-+...|.. .+ +.+..+.|.++
T Consensus 509 l~~~~~~---~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~---ysylRmDGtT~ 582 (923)
T KOG0387|consen 509 LDRRDED---EKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKG---YSYLRMDGTTP 582 (923)
T ss_pred ccCcccc---cccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCC---ceEEEecCCCc
Confidence 1111000 000011111122334555555555433 467999999999999999999884 34 88999999999
Q ss_pred hHHHHHHHHHHhcCC--ceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEE
Q 011605 371 QSVRSKTLKAFREGK--IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (481)
Q Consensus 371 ~~~r~~~~~~f~~g~--~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 438 (481)
...|..++++|.++. .-+|++|.+.+-|+|+.+++.||+|++.|+|..-.|..-||-|.||+..+++|
T Consensus 583 ~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 583 AALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred cchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 999999999999775 34678899999999999999999999999999999999999999998766666
No 116
>COG4889 Predicted helicase [General function prediction only]
Probab=99.87 E-value=1.7e-21 Score=189.88 Aligned_cols=370 Identities=16% Similarity=0.209 Sum_probs=213.3
Q ss_pred CCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011605 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 127 (481)
-..||+||++|+..+.+.+..+.+.-+.+++|+|||++++- +.+.+.. .++|+++|+.+|..|..+++..-..
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~-----~~iL~LvPSIsLLsQTlrew~~~~~- 231 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA-----ARILFLVPSISLLSQTLREWTAQKE- 231 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh-----hheEeecchHHHHHHHHHHHhhccC-
Confidence 35899999999999999988777788999999999999764 4444444 3899999999999998887765432
Q ss_pred cCceEEEeccCcchHHHHHHHhhccccccCccCChhhHH-----HhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEE
Q 011605 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL-----QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202 (481)
Q Consensus 128 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iV 202 (481)
+.+....++++....... +-................+. +.-..+--|+++|++++...-+. ...-+..|++||
T Consensus 232 l~~~a~aVcSD~kvsrs~-eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G~~~fDlii 309 (1518)
T COG4889 232 LDFRASAVCSDDKVSRSA-EDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAGLDEFDLII 309 (1518)
T ss_pred ccceeEEEecCccccccc-cccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcCCCCccEEE
Confidence 256666666665443321 11111111111112222111 22233467999999998665443 234578899999
Q ss_pred EechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCch-
Q 011605 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN- 281 (481)
Q Consensus 203 vDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~- 281 (481)
+||||+....... ...+..|. .. + ..+.....+.+.|+||+.--..
T Consensus 310 cDEAHRTtGa~~a-----------~dd~saFt------~v--H--------------s~~niKa~kRlYmTATPkiy~eS 356 (1518)
T COG4889 310 CDEAHRTTGATLA-----------GDDKSAFT------RV--H--------------SDQNIKAAKRLYMTATPKIYSES 356 (1518)
T ss_pred ecchhccccceec-----------ccCcccce------ee--c--------------CcchhHHHHhhhcccCchhhchh
Confidence 9999974221100 00000000 00 0 0000001112233333321000
Q ss_pred -----------------------hhhc---------ccccCCceeecCCccccCcccccccccccCCCchHHHH------
Q 011605 282 -----------------------KLAQ---------LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL------ 323 (481)
Q Consensus 282 -----------------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l------ 323 (481)
.+.. ..+.+..+.........+.......-.-.....+..-.
T Consensus 357 ~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~ 436 (1518)
T COG4889 357 SKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGC 436 (1518)
T ss_pred hhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhh
Confidence 0000 01111111111111111111111000000001111111
Q ss_pred HHHH-Hhc--------------CCCeEEEEecchhhHHHHHHHHhh------------ccccceeEEEcccccChHHHHH
Q 011605 324 VALL-QSL--------------GEEKCIVFTSSVESTHRLCTLLNH------------FGELRIKIKEYSGLQRQSVRSK 376 (481)
Q Consensus 324 ~~~l-~~~--------------~~~~~lVf~~s~~~~~~l~~~L~~------------~~~~~~~~~~~~~~~~~~~r~~ 376 (481)
..-+ +.. +-++.+-||.+++...++++.+.. +......+.++.|.|+..+|..
T Consensus 437 wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~ 516 (1518)
T COG4889 437 WNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLD 516 (1518)
T ss_pred hhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHH
Confidence 1111 111 123789999999999888876643 2234456778899999999965
Q ss_pred HHHH---HhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCC-CccEEEEee------------
Q 011605 377 TLKA---FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLH------------ 440 (481)
Q Consensus 377 ~~~~---f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~-~g~~~~~~~------------ 440 (481)
.+.. |....++||-....+++|||+|.++.||++++..|+...+|.+||+.|.-. +...|+++.
T Consensus 517 l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~ 596 (1518)
T COG4889 517 LLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDE 596 (1518)
T ss_pred HHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHH
Confidence 5543 346789999999999999999999999999999999999999999999543 345555532
Q ss_pred ---cchHHHHHHHHHHhcCCCC
Q 011605 441 ---KDEVKRFKKLLQKADNDSC 459 (481)
Q Consensus 441 ---~~~~~~~~~~~~~~~~~~~ 459 (481)
..+++...++++.|..+..
T Consensus 597 l~~n~nFk~VWqVlnALRShD~ 618 (1518)
T COG4889 597 LVNNTNFKNVWQVLKALRSHDE 618 (1518)
T ss_pred HhcCccHHHHHHHHHHHHhcCH
Confidence 3466788888888866653
No 117
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=2e-21 Score=191.45 Aligned_cols=149 Identities=19% Similarity=0.120 Sum_probs=103.0
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011605 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 47 ~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (481)
+| .|..||.+.... .-++.++++.|||.+|||++...++-..+... ...-+|+++|+++|+.|....+.....
T Consensus 509 dF-~Pd~WQ~elLDs----vDr~eSavIVAPTSaGKTfisfY~iEKVLRes--D~~VVIyvaPtKaLVnQvsa~VyaRF~ 581 (1330)
T KOG0949|consen 509 DF-CPDEWQRELLDS----VDRNESAVIVAPTSAGKTFISFYAIEKVLRES--DSDVVIYVAPTKALVNQVSANVYARFD 581 (1330)
T ss_pred cc-CCcHHHHHHhhh----hhcccceEEEeeccCCceeccHHHHHHHHhhc--CCCEEEEecchHHHhhhhhHHHHHhhc
Confidence 45 688999777554 33578899999999999999877776666654 334799999999999999988876653
Q ss_pred ccC-ceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcC--CCcccCCccEEEE
Q 011605 127 AVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT--RGFTLEHLCYLVV 203 (481)
Q Consensus 127 ~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~--~~~~~~~~~~iVv 203 (481)
..- .....+.|....+.. .. ..+|+|+|+-|+.+-.++... ...+..++.++|+
T Consensus 582 ~~t~~rg~sl~g~ltqEYs------in-----------------p~nCQVLITvPecleslLlspp~~q~~cerIRyiIf 638 (1330)
T KOG0949|consen 582 TKTFLRGVSLLGDLTQEYS------IN-----------------PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIF 638 (1330)
T ss_pred cCccccchhhHhhhhHHhc------CC-----------------chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEe
Confidence 211 111122222221111 11 136899999999998888763 2346788999999
Q ss_pred echhHhhHHHHhhhHHHHHHhc
Q 011605 204 DETDRLLREAYQAWLPTVLQLT 225 (481)
Q Consensus 204 DE~H~l~~~~~~~~~~~l~~~~ 225 (481)
||+|.+.+..-+-..++++-+.
T Consensus 639 DEVH~iG~~ed~l~~Eqll~li 660 (1330)
T KOG0949|consen 639 DEVHLIGNEEDGLLWEQLLLLI 660 (1330)
T ss_pred chhhhccccccchHHHHHHHhc
Confidence 9999987665555555555554
No 118
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.87 E-value=2.4e-19 Score=180.95 Aligned_cols=124 Identities=22% Similarity=0.270 Sum_probs=108.9
Q ss_pred CchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc
Q 011605 317 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (481)
Q Consensus 317 ~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~ 394 (481)
..+...+...+... .+.++||||++...++.+++.|.+.+ +.+..+|++++..+|.++++.|+.|+..|||||+.
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g---i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG---IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc---cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcCh
Confidence 34445555555443 46789999999999999999999877 88999999999999999999999999999999999
Q ss_pred cccCCCCCCCcEEEEcC-----CCCChhHHHHHhhhcccCCCCccEEEEeecchH
Q 011605 395 MTRGMDVEGVNNVVNYD-----KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 395 l~~Gvdl~~~~~Vi~~~-----~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 444 (481)
+++|+|+|++++||+++ .|.+..+|+||+||+||. ..|.++.|++..+.
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITD 555 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCH
Confidence 99999999999999987 688999999999999997 58999999887543
No 119
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=3.1e-20 Score=187.49 Aligned_cols=135 Identities=20% Similarity=0.254 Sum_probs=113.0
Q ss_pred CCCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEc
Q 011605 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (481)
Q Consensus 315 ~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t 392 (481)
....|...+.+.+... .+.++||||+|+..++.+++.|...+ +.+..+|+ ...+|++.+.+|+.+...|+|||
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~g---I~h~vLna--kq~~REa~Iia~AG~~g~VtIAT 653 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR---IAHNVLNA--KQHDREAEIVAEAGQKGAVTIAT 653 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcC---CCceeecC--CHHHhHHHHHHhcCCCCeEEEec
Confidence 3445777777777543 67899999999999999999999887 78888887 46789999999999999999999
Q ss_pred cccccCCCCC---CCc-----EEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchH-------HHHHHHHHHh
Q 011605 393 DAMTRGMDVE---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKA 454 (481)
Q Consensus 393 ~~l~~Gvdl~---~~~-----~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~~~~~~ 454 (481)
+++++|+||+ ++. +||....|.|...|.|+.||+||.|.+|.++.|++..|. +++.++++.+
T Consensus 654 NMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~ 730 (1025)
T PRK12900 654 NMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRL 730 (1025)
T ss_pred cCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHc
Confidence 9999999999 332 458889999999999999999999999999999988654 2455555554
No 120
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=1.5e-20 Score=172.98 Aligned_cols=316 Identities=20% Similarity=0.203 Sum_probs=209.0
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
..+||||.+.+..+..+.. -++.+++.|+|+|||++.+.++.. -+.++|++|.+...+.||..++..|+.--
T Consensus 301 t~iRpYQEksL~KMFGNgR-ARSGiIVLPCGAGKtLVGvTAa~t-------ikK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKTLVGVTAACT-------IKKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred cccCchHHHHHHHHhCCCc-ccCceEEEecCCCCceeeeeeeee-------ecccEEEEecCccCHHHHHHHHHhhcccC
Confidence 5789999999988775432 356889999999999988765542 22369999999999999999999997655
Q ss_pred CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCC-------CcccCCccEE
Q 011605 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-------GFTLEHLCYL 201 (481)
Q Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~-------~~~~~~~~~i 201 (481)
+-.++..+++..- ....++.|+|+|+.++..--.+.. .+.-..+.++
T Consensus 373 d~~i~rFTsd~Ke--------------------------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGll 426 (776)
T KOG1123|consen 373 DDQICRFTSDAKE--------------------------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLL 426 (776)
T ss_pred ccceEEeeccccc--------------------------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeE
Confidence 5566666665531 223577899999988744221110 0123457899
Q ss_pred EEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCch
Q 011605 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281 (481)
Q Consensus 202 VvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~ 281 (481)
++||+|.+.+..|+.-+..+-.++ .+.++||+..+.+
T Consensus 427 llDEVHvvPA~MFRRVlsiv~aHc-------------------------------------------KLGLTATLvREDd 463 (776)
T KOG1123|consen 427 LLDEVHVVPAKMFRRVLSIVQAHC-------------------------------------------KLGLTATLVREDD 463 (776)
T ss_pred EeehhccchHHHHHHHHHHHHHHh-------------------------------------------hccceeEEeeccc
Confidence 999999999888887766665554 3456666654433
Q ss_pred hhhccc-ccCCceeecCCccc-----------------cCccccccc---------ccccCCCchHHHHHHHHHhc--CC
Q 011605 282 KLAQLD-LHHPLFLTTGETRY-----------------KLPERLESY---------KLICESKLKPLYLVALLQSL--GE 332 (481)
Q Consensus 282 ~~~~~~-~~~~~~~~~~~~~~-----------------~~~~~~~~~---------~~~~~~~~k~~~l~~~l~~~--~~ 332 (481)
....+. +-.|.......... ..++-+..| ....-+..|+..-.-+++.+ .+
T Consensus 464 KI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~Rg 543 (776)
T KOG1123|consen 464 KITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRG 543 (776)
T ss_pred cccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcC
Confidence 322211 11111111110000 000000001 11112233443333333333 58
Q ss_pred CeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhc-CCceEEEEccccccCCCCCCCcEEEEcC
Q 011605 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~ 411 (481)
.++|||..++-...+.|-.|.+ .++.|.++..||-.+++.|+- ...+-++.+.+....+|+|.++++|+.+
T Consensus 544 DKiIVFsDnvfALk~YAikl~K--------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 544 DKIIVFSDNVFALKEYAIKLGK--------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQIS 615 (776)
T ss_pred CeEEEEeccHHHHHHHHHHcCC--------ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEc
Confidence 8999999998877777766543 457799999999999999995 4678888888999999999999999876
Q ss_pred CC-CChhHHHHHhhhcccCCCC------ccEEEEeecchHHHHHH
Q 011605 412 KP-AYIKTYIHRAGRTARAGQL------GRCFTLLHKDEVKRFKK 449 (481)
Q Consensus 412 ~~-~s~~~~~Q~~GR~~R~~~~------g~~~~~~~~~~~~~~~~ 449 (481)
.. .|..+-.||.||..|..+. ...|.+++.+..++..+
T Consensus 616 SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YS 660 (776)
T KOG1123|consen 616 SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYS 660 (776)
T ss_pred ccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhh
Confidence 55 5677899999999984321 55666677766655544
No 121
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=3e-19 Score=175.54 Aligned_cols=357 Identities=17% Similarity=0.162 Sum_probs=214.2
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|. .|++.|.-..-.++ +.-+..+.||.|||+++.++++-....+ ..+.+++|+..|+.+-++++..+.
T Consensus 75 lg~-r~ydvQlig~l~Ll------~G~VaEM~TGEGKTLvA~l~a~l~AL~G----~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLL------AGDVIEMATGEGKTLAGAIAAAGYALQG----RRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cCC-CcchHHHHHHHHHh------CCCcccccCCCCHHHHHHHHHHHHHHcC----CCeEEEcCCHHHHHHHHHHHHHHH
Confidence 676 88999977765543 3458899999999999988887665554 379999999999999999999999
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcC-----CCcccCCcc
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~-----~~~~~~~~~ 199 (481)
..+|++++++.++.+...+...+ .++|+++|...+ .+.|+.. .......+.
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY-----------------------~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~ 200 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAY-----------------------ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPD 200 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHH-----------------------cCCCEEcCCcccccccchhhhccChHhhcCCccc
Confidence 99999999999987765553332 459999998655 2233221 112346688
Q ss_pred EEEEechhHhhHH---------------HHhhhHHHHHHhcccccccc---------------------c---ccccccc
Q 011605 200 YLVVDETDRLLRE---------------AYQAWLPTVLQLTRSDNENR---------------------F---SDASTFL 240 (481)
Q Consensus 200 ~iVvDE~H~l~~~---------------~~~~~~~~l~~~~~~~~~~~---------------------~---~~~~~~~ 240 (481)
+.||||++.++=+ .....+..+...+....... + +.+....
T Consensus 201 faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~ 280 (764)
T PRK12326 201 VAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEH 280 (764)
T ss_pred eeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcch
Confidence 9999999975322 11122222222221110000 0 0000000
Q ss_pred -cc-------cccchhhhhc-------cccccccCCC--------CC-cc------------------------------
Q 011605 241 -PS-------AFGSLKTIRR-------CGVERGFKDK--------PY-PR------------------------------ 266 (481)
Q Consensus 241 -~~-------~~~~~~~~~~-------~~~~~~~~~~--------~~-~~------------------------------ 266 (481)
.. ++++...+.+ ++.....+.. .+ .+
T Consensus 281 ~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr 360 (764)
T PRK12326 281 VGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIG 360 (764)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHH
Confidence 00 0000000000 0000000000 00 00
Q ss_pred --eeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhc--CCCeEEEEecch
Q 011605 267 --LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSV 342 (481)
Q Consensus 267 --~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~ 342 (481)
.++..||.|......++...+-.+...+++. .+...... .-.+......|...+.+.+... .+.++||.|.|+
T Consensus 361 ~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtn--kp~~R~d~-~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI 437 (764)
T PRK12326 361 RYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPN--KPNIREDE-ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDV 437 (764)
T ss_pred hcchheeecCCChhHHHHHHHHhCCcEEECCCC--CCceeecC-CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCH
Confidence 0134555555433333333232222222211 11111111 1122233344555555544332 577999999999
Q ss_pred hhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCC---------------CcEE
Q 011605 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG---------------VNNV 407 (481)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~---------------~~~V 407 (481)
...+.+++.|.+.+ ++...++......|.+.+-++-+. -.|.|||+|+++|.||.- -=+|
T Consensus 438 ~~SE~ls~~L~~~g---I~h~vLNAk~~~~EA~IIa~AG~~--gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhV 512 (764)
T PRK12326 438 AESEELAERLRAAG---VPAVVLNAKNDAEEARIIAEAGKY--GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHV 512 (764)
T ss_pred HHHHHHHHHHHhCC---CcceeeccCchHhHHHHHHhcCCC--CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEE
Confidence 99999999999877 777778877655444444333222 478999999999999862 2278
Q ss_pred EEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchH
Q 011605 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 408 i~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 444 (481)
|....+.|...-.|..||+||.|.+|.+..|++-.|.
T Consensus 513 IgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 513 IGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred EeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 8888999999999999999999999999999886543
No 122
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.85 E-value=3.3e-19 Score=177.10 Aligned_cols=368 Identities=21% Similarity=0.144 Sum_probs=214.6
Q ss_pred CccchhhHHhHHhhhCCCC------CCCCEEEECCCCchhHHHhHHHHHHHHHHhccC---CccEEEEcccHHHHHHHHH
Q 011605 49 SSLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVR---CLRALVVLPTRDLALQVKD 119 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~------~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~---~~~~lil~Pt~~L~~q~~~ 119 (481)
..++|||++.+..++..+. ....+|+...+|+|||+..+..++..+...+.. -.+.|||+|. .|+..|.+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 3688999999998886543 224588999999999999988777777765420 0489999998 77888999
Q ss_pred HHHHhccccCceEEEeccCcch-HHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCc
Q 011605 120 VFAAIAPAVGLSVGLAVGQSSI-ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL 198 (481)
Q Consensus 120 ~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~ 198 (481)
++.+|.....+......|.... -........ ....+-..-|++.+++.+.+.... +....+
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~---------------~~~~~~~~~vli~sye~~~~~~~~---il~~~~ 377 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILF---------------LGYKQFTTPVLIISYETASDYCRK---ILLIRP 377 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHH---------------hhhhheeEEEEeccHHHHHHHHHH---HhcCCC
Confidence 9999976545666666666552 000000000 000111235888899998766655 446679
Q ss_pred cEEEEechhHhhHHH----------------------HhhhHHHHHHhcccccccccccccccccccccchh--------
Q 011605 199 CYLVVDETDRLLREA----------------------YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK-------- 248 (481)
Q Consensus 199 ~~iVvDE~H~l~~~~----------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 248 (481)
+++|+||.|.+-+.. +.+.+...+.++.-.++........+.........
T Consensus 378 glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 378 GLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred CeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 999999999753321 23444444444444444433333322221110000
Q ss_pred --------------------hhhccccccccCCCCCcceeeeeeceeeccCc--hhh-------------------hccc
Q 011605 249 --------------------TIRRCGVERGFKDKPYPRLVKMVLSATLTQDP--NKL-------------------AQLD 287 (481)
Q Consensus 249 --------------------~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~--~~~-------------------~~~~ 287 (481)
..++.+ ....+..|.-...+|++-.|.-+.. ..+ +...
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~-~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~ 536 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTG-DILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKL 536 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeeccc-chhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHH
Confidence 001111 1111112222333555555543220 000 1111
Q ss_pred ccCCceeecCC-----ccccC------cccccccccccCCCchHHHHHHHHHhcCCCeE---EEEecchhhHHHHHHHHh
Q 011605 288 LHHPLFLTTGE-----TRYKL------PERLESYKLICESKLKPLYLVALLQSLGEEKC---IVFTSSVESTHRLCTLLN 353 (481)
Q Consensus 288 ~~~~~~~~~~~-----~~~~~------~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~---lVf~~s~~~~~~l~~~L~ 353 (481)
+.+|..+.... ..... +...+..........++..|..++... .+++ .|++....+...+.+.+.
T Consensus 537 cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~-~ek~~~~~v~Isny~~tldl~e~~~ 615 (776)
T KOG0390|consen 537 CNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI-REKLLVKSVLISNYTQTLDLFEQLC 615 (776)
T ss_pred hcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH-hhhcceEEEEeccHHHHHHHHHHHH
Confidence 12222221000 00000 000011111111233455555555333 2333 333344445555554444
Q ss_pred hccccceeEEEcccccChHHHHHHHHHHhcC--C-ceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCC
Q 011605 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREG--K-IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~-~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~ 430 (481)
.+. +..+..++|.|+..+|+.+++.|.+- . .-+|.++-+.++|+++-+++.||++|+.|+|+.-.|.++|+-|.|
T Consensus 616 ~~~--g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdG 693 (776)
T KOG0390|consen 616 RWR--GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDG 693 (776)
T ss_pred hhc--CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCC
Confidence 432 48999999999999999999999854 3 335567789999999999999999999999999999999999999
Q ss_pred CCccEEEEe
Q 011605 431 QLGRCFTLL 439 (481)
Q Consensus 431 ~~g~~~~~~ 439 (481)
|...||+|=
T Consensus 694 QKk~v~iYr 702 (776)
T KOG0390|consen 694 QKKPVYIYR 702 (776)
T ss_pred CcceEEEEE
Confidence 998888883
No 123
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.85 E-value=3.3e-18 Score=174.21 Aligned_cols=152 Identities=21% Similarity=0.309 Sum_probs=127.1
Q ss_pred chHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcccc
Q 011605 318 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (481)
Q Consensus 318 ~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l 395 (481)
.+...+...+... .+.+++|||++...++.+++.|.+.+ +.+..+||+++..+|..+++.|+.|+..|+|||+.+
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~g---i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L 506 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLL 506 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcc---eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHH
Confidence 3444555555433 46789999999999999999999877 899999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEcCC-----CCChhHHHHHhhhcccCCCCccEEEEeec---------chHHHHHHHHHHhcCCCCCC
Q 011605 396 TRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHK---------DEVKRFKKLLQKADNDSCPI 461 (481)
Q Consensus 396 ~~Gvdl~~~~~Vi~~~~-----~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 461 (481)
++|+|+|++++||+++. |.+..+|+||+||+||. ..|.++.|++. .+....+++...++...
T Consensus 507 ~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 582 (652)
T PRK05298 507 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEH--- 582 (652)
T ss_pred hCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhcc---
Confidence 99999999999999875 67899999999999996 68999999984 46677777777666555
Q ss_pred CCCCchhhhhhhccc
Q 011605 462 HSIPSSLIESLRPVY 476 (481)
Q Consensus 462 ~~~~~~~~~~~~~~~ 476 (481)
.-+|..+++.+.+..
T Consensus 583 ~~~~~~~~~~~~~~~ 597 (652)
T PRK05298 583 GITPKTIKKKIRDIL 597 (652)
T ss_pred CCCChhHHHHHHHHH
Confidence 667777777765543
No 124
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.84 E-value=2.9e-18 Score=170.33 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=69.5
Q ss_pred hHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc-cc--cCce
Q 011605 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA-PA--VGLS 131 (481)
Q Consensus 55 Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~--~~~~ 131 (481)
|.+.+..+...+..++.+++.++||+|||++|++|++..+... .+.+++|++||++|+.|+.+.+..+. +. .+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~--~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~ 79 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER--PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQ 79 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc--cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCee
Confidence 7778888887777788899999999999999999998876642 24589999999999999999888876 32 3567
Q ss_pred EEEeccCcch
Q 011605 132 VGLAVGQSSI 141 (481)
Q Consensus 132 ~~~~~g~~~~ 141 (481)
+..+.|...+
T Consensus 80 ~~~lkGr~nY 89 (636)
T TIGR03117 80 AGFFPGSQEF 89 (636)
T ss_pred EEEEECCccc
Confidence 7777777654
No 125
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.83 E-value=3.1e-18 Score=181.30 Aligned_cols=159 Identities=15% Similarity=0.133 Sum_probs=105.0
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHH-HH---H
Q 011605 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD-VF---A 122 (481)
Q Consensus 47 ~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~-~~---~ 122 (481)
|| ++|+-|.+++..+...+..++.+++.||||+|||++|++|++..... .+.+++|.|+|+.|.+|... ++ +
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~---~~~~vvIsT~T~~LQ~Ql~~kDiP~L~ 330 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK---KEEPVVISTYTIQLQQQLLEKDIPLLQ 330 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc---cCCeEEEEcCCHHHHHHHHHhhHHHHH
Confidence 55 89999999999888888778889999999999999999998765443 23589999999999999866 33 3
Q ss_pred HhccccCceEEEeccCcchHHH--HHHHhhcc-------------------------------c----------cccCcc
Q 011605 123 AIAPAVGLSVGLAVGQSSIADE--ISELIKRP-------------------------------K----------LEAGIC 159 (481)
Q Consensus 123 ~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~-------------------------------~----------~~~~~~ 159 (481)
+.+. .+++++.+.|...+-.. .......+ . .....|
T Consensus 331 ~~~~-~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~~~c 409 (928)
T PRK08074 331 KIFP-FPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGESD 409 (928)
T ss_pred HHcC-CCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccCccc
Confidence 3332 25677777776653111 00000000 0 000001
Q ss_pred CC---------hhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhH
Q 011605 160 YD---------PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (481)
Q Consensus 160 ~~---------~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~ 211 (481)
.+ .....+.....++|+|+++..|+..+.... ..+...+++||||||++.+
T Consensus 410 ~~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~-~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 410 GGKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEE-PLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred CCCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhc-ccCCCCCeEEEECCchHHH
Confidence 00 111123334568899999998887764322 2356689999999999764
No 126
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.83 E-value=5.7e-19 Score=162.50 Aligned_cols=313 Identities=14% Similarity=0.134 Sum_probs=196.1
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
+.+-|+|.+-+...++ +|..+++...+|.|||+.++. +...+.. ....||+||..- .-.|++.++++++..
T Consensus 197 s~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAla-IA~yyra----EwplliVcPAsv-rftWa~al~r~lps~ 267 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALA-IARYYRA----EWPLLIVCPASV-RFTWAKALNRFLPSI 267 (689)
T ss_pred HhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHH-HHHHHhh----cCcEEEEecHHH-hHHHHHHHHHhcccc
Confidence 4678999999888776 688899999999999998754 3333333 236999999854 556999999998765
Q ss_pred CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
.. +.+..+..+... .+.....|.|.+++.+..+-.. +.-..+.++|+||.|.
T Consensus 268 ~p-i~vv~~~~D~~~------------------------~~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~ 319 (689)
T KOG1000|consen 268 HP-IFVVDKSSDPLP------------------------DVCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHM 319 (689)
T ss_pred cc-eEEEecccCCcc------------------------ccccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhh
Confidence 43 333333332110 1234568999999988765443 2234588999999997
Q ss_pred hhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccC---------
Q 011605 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD--------- 279 (481)
Q Consensus 209 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~--------- 279 (481)
+-+ +-......+........ +++++|.|+.-.
T Consensus 320 Lk~-sktkr~Ka~~dllk~ak--------------------------------------hvILLSGTPavSRP~elytqi 360 (689)
T KOG1000|consen 320 LKD-SKTKRTKAATDLLKVAK--------------------------------------HVILLSGTPAVSRPSELYTQI 360 (689)
T ss_pred hhc-cchhhhhhhhhHHHHhh--------------------------------------heEEecCCcccCCchhhhhhh
Confidence 633 22222222222221110 233333333211
Q ss_pred ----------chhhhccccc--------------------------------------------CCceeecCCc-cccCc
Q 011605 280 ----------PNKLAQLDLH--------------------------------------------HPLFLTTGET-RYKLP 304 (481)
Q Consensus 280 ----------~~~~~~~~~~--------------------------------------------~~~~~~~~~~-~~~~~ 304 (481)
..++...++. ..+.+..... .....
T Consensus 361 ~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~ 440 (689)
T KOG1000|consen 361 RAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMD 440 (689)
T ss_pred hhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHH
Confidence 0000000000 0000000000 00000
Q ss_pred ccc---ccc---------------ccccCCCchHHHHHHHHHh------cCCCeEEEEecchhhHHHHHHHHhhccccce
Q 011605 305 ERL---ESY---------------KLICESKLKPLYLVALLQS------LGEEKCIVFTSSVESTHRLCTLLNHFGELRI 360 (481)
Q Consensus 305 ~~~---~~~---------------~~~~~~~~k~~~l~~~l~~------~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~ 360 (481)
... ..+ ++......|...+.+.+.. ....+.+|||.+....+.|-..+.+.+ +
T Consensus 441 ~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~---v 517 (689)
T KOG1000|consen 441 DLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRK---V 517 (689)
T ss_pred HHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcC---C
Confidence 000 000 0001112233333333322 146799999999999999988888776 8
Q ss_pred eEEEcccccChHHHHHHHHHHhcC-CceEE-EEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEE
Q 011605 361 KIKEYSGLQRQSVRSKTLKAFREG-KIQVL-VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (481)
Q Consensus 361 ~~~~~~~~~~~~~r~~~~~~f~~g-~~~iL-v~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 438 (481)
+...+.|.++..+|....+.|+.+ +..|- ++..+.+.|+++...+.||+..++|++.-++|.--|+.|.|++..+.++
T Consensus 518 g~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ 597 (689)
T KOG1000|consen 518 GSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQ 597 (689)
T ss_pred CeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEE
Confidence 889999999999999999999955 45553 4557889999999999999999999999999999999999999766666
Q ss_pred ee
Q 011605 439 LH 440 (481)
Q Consensus 439 ~~ 440 (481)
|.
T Consensus 598 yl 599 (689)
T KOG1000|consen 598 YL 599 (689)
T ss_pred EE
Confidence 54
No 127
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.83 E-value=2.9e-19 Score=180.59 Aligned_cols=308 Identities=20% Similarity=0.242 Sum_probs=203.7
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHH-HhccccCceEEEeccCcchHHHHH
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA-AIAPAVGLSVGLAVGQSSIADEIS 146 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~ 146 (481)
.++.+++.|.||+|||...--.+++.....+ ...++++--|.+--|...++++. +.+...|-.++.-.+-.+..
T Consensus 187 ~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~---- 261 (924)
T KOG0920|consen 187 ENQVVVISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKR---- 261 (924)
T ss_pred hCceEEEeCCCCCCchhhhhHHHHHHHHhcC-CCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeeccc----
Confidence 4778999999999999987777888776665 55667777798877777666543 23333343333333322211
Q ss_pred HHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcc
Q 011605 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (481)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~ 226 (481)
.....+++||.+.|++.+... ..+.++..||+||+|.- ....+.+-.+++.+.
T Consensus 262 -----------------------s~~t~L~fcTtGvLLr~L~~~--~~l~~vthiivDEVHER--~i~~DflLi~lk~lL 314 (924)
T KOG0920|consen 262 -----------------------SRETRLLFCTTGVLLRRLQSD--PTLSGVTHIIVDEVHER--SINTDFLLILLKDLL 314 (924)
T ss_pred -----------------------CCceeEEEecHHHHHHHhccC--cccccCceeeeeeEEEc--cCCcccHHHHHHHHh
Confidence 123589999999999998773 45788999999999952 222333333333332
Q ss_pred cccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccC---
Q 011605 227 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL--- 303 (481)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 303 (481)
..+ |.+++|+||||...+ .+..-+...+.+......-+..
T Consensus 315 ~~~-----------------------------------p~LkvILMSAT~dae--~fs~YF~~~pvi~i~grtfpV~~~f 357 (924)
T KOG0920|consen 315 PRN-----------------------------------PDLKVILMSATLDAE--LFSDYFGGCPVITIPGRTFPVKEYF 357 (924)
T ss_pred hhC-----------------------------------CCceEEEeeeecchH--HHHHHhCCCceEeecCCCcchHHHH
Confidence 221 677999999999632 2222222223222222111000
Q ss_pred -----------ccccccc------------ccccCCCchHHHHHHHHHhc----CCCeEEEEecchhhHHHHHHHHhhcc
Q 011605 304 -----------PERLESY------------KLICESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFG 356 (481)
Q Consensus 304 -----------~~~~~~~------------~~~~~~~~k~~~l~~~l~~~----~~~~~lVf~~s~~~~~~l~~~L~~~~ 356 (481)
.....++ ......+.....+..++... ..+.+|||.+...+...+.+.|....
T Consensus 358 LEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~ 437 (924)
T KOG0920|consen 358 LEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNL 437 (924)
T ss_pred HHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcc
Confidence 0000000 00001112334444444332 46789999999999999999997532
Q ss_pred c----cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCC--------C----------C
Q 011605 357 E----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK--------P----------A 414 (481)
Q Consensus 357 ~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~--------~----------~ 414 (481)
. ...-+...|+.|+..+...++.....|..+|+++|++++.+|.|+++-.||..+. . .
T Consensus 438 ~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wv 517 (924)
T KOG0920|consen 438 PFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWV 517 (924)
T ss_pred ccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeec
Confidence 1 3356788999999999999999999999999999999999999999999997442 2 2
Q ss_pred ChhHHHHHhhhcccCCCCccEEEEeecchHH
Q 011605 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445 (481)
Q Consensus 415 s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 445 (481)
|.++-.||.|||||. +.|.||.++.+...+
T Consensus 518 SkAna~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 518 SKANAKQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred cccchHHhcccccCc-cCCeeEEeechhhhh
Confidence 455677999999997 789999999876554
No 128
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=3.5e-19 Score=179.36 Aligned_cols=367 Identities=18% Similarity=0.210 Sum_probs=215.9
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|. .|++.|.- ..+.-++.-+..+.||.|||+++.++++-....+ ..+.+++|+..||.+-+.++..++
T Consensus 79 lGm-~~ydVQli------Gg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G----~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 79 MGM-RHFDVQLI------GGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSG----KGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred hCC-CcchhHHH------hhhHhccCccccccCCCCChHHHHHHHHHHHHcC----CCEEEEeCCHHHHHHHHHHHHHHh
Confidence 575 77888843 3333356779999999999999988887665554 379999999999999999999999
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcCC-----CcccCCcc
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~~-----~~~~~~~~ 199 (481)
..+|++++++.++.+.......+ .++|+++|...+ .+.|...- ......+.
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y-----------------------~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~ 204 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAY-----------------------AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELN 204 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHh-----------------------cCCEEEEcccccccchhhccceechhhhcccccc
Confidence 99999999999887765554332 259999998776 33333211 11247789
Q ss_pred EEEEechhHhhHHH----------------HhhhHHHHHHhcccc---------cccccccc------------cccc--
Q 011605 200 YLVVDETDRLLREA----------------YQAWLPTVLQLTRSD---------NENRFSDA------------STFL-- 240 (481)
Q Consensus 200 ~iVvDE~H~l~~~~----------------~~~~~~~l~~~~~~~---------~~~~~~~~------------~~~~-- 240 (481)
++||||+|.++=+. ....+..+...+... ....+... ....
T Consensus 205 ~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~ 284 (913)
T PRK13103 205 FAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEE 284 (913)
T ss_pred eeEechhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHH
Confidence 99999999743210 111122222211100 00000000 0000
Q ss_pred -----------cccc---------------cchhhhh-------ccccccccCCCC---Cc------c------------
Q 011605 241 -----------PSAF---------------GSLKTIR-------RCGVERGFKDKP---YP------R------------ 266 (481)
Q Consensus 241 -----------~~~~---------------~~~~~~~-------~~~~~~~~~~~~---~~------~------------ 266 (481)
...| ++...+. .++.....+... .+ +
T Consensus 285 ~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~ 364 (913)
T PRK13103 285 MLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLN 364 (913)
T ss_pred HhhhCCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCC
Confidence 0000 0000000 000000000000 00 0
Q ss_pred --------------------eeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHH
Q 011605 267 --------------------LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326 (481)
Q Consensus 267 --------------------~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 326 (481)
.++..||+|.......+...+-.+...+++. .+........ .+......|...+.+.
T Consensus 365 I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTn--kP~~R~D~~d-~vy~t~~eK~~Ai~~e 441 (913)
T PRK13103 365 IQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPN--KPLARKDFND-LVYLTAEEKYAAIITD 441 (913)
T ss_pred cCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCC--CCcccccCCC-eEEcCHHHHHHHHHHH
Confidence 0123444444332222222222222222221 1111111111 1223344566555554
Q ss_pred HHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCC--
Q 011605 327 LQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE-- 402 (481)
Q Consensus 327 l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~-- 402 (481)
+... .+.++||-+.|+...+.+++.|+..+ ++.-+++......|.+.+-++-+ .-.|.|||+|+++|.||.
T Consensus 442 i~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~g---i~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIkLg 516 (913)
T PRK13103 442 IKECMALGRPVLVGTATIETSEHMSNLLKKEG---IEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRGTDILLG 516 (913)
T ss_pred HHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcC---CcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCCCCEecC
Confidence 4432 57799999999999999999999877 66666666655544444443322 347999999999999995
Q ss_pred -----------------------------------CCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchH---
Q 011605 403 -----------------------------------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV--- 444 (481)
Q Consensus 403 -----------------------------------~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~--- 444 (481)
+-=+||....+.|..--.|..||+||.|.+|.+..|++-.|.
T Consensus 517 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lmr 596 (913)
T PRK13103 517 GNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMR 596 (913)
T ss_pred CchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHHH
Confidence 222688888999999999999999999999999999887543
Q ss_pred ----HHHHHHHHHh
Q 011605 445 ----KRFKKLLQKA 454 (481)
Q Consensus 445 ----~~~~~~~~~~ 454 (481)
+++.++++.+
T Consensus 597 ~fg~~~~~~~~~~~ 610 (913)
T PRK13103 597 IFASDRVKNFMKAL 610 (913)
T ss_pred hhCcHHHHHHHHHc
Confidence 3445555555
No 129
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=9.1e-19 Score=166.47 Aligned_cols=302 Identities=22% Similarity=0.268 Sum_probs=192.7
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHHhcc--CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHH
Q 011605 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143 (481)
Q Consensus 66 ~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 143 (481)
+..++-+++.|.||||||...- +.+..++. .+.++-+--|.+.-+-.++..+. ...|.+.+.-+|..-..+
T Consensus 277 v~e~QVLiI~GeTGSGKTTQiP----QyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA---~EMgvkLG~eVGYsIRFE 349 (902)
T KOG0923|consen 277 VKEHQVLIIVGETGSGKTTQIP----QYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVA---EEMGVKLGHEVGYSIRFE 349 (902)
T ss_pred HHhCcEEEEEcCCCCCcccccc----HHHHhcccccCCceEeecCcchHHHHHHHHHHH---HHhCcccccccceEEEec
Confidence 3347789999999999998632 33333322 22234455587776655554332 222444444444333222
Q ss_pred HHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHH
Q 011605 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223 (481)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~ 223 (481)
... ....-|=++|.++|++-+.. ...+.++++|||||||.- .-.-+.+..+++
T Consensus 350 dcT-----------------------SekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHER--TL~TDILfgLvK 402 (902)
T KOG0923|consen 350 DCT-----------------------SEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHER--TLHTDILFGLVK 402 (902)
T ss_pred ccc-----------------------CcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhh--hhhhhHHHHHHH
Confidence 211 12336779999999886554 256889999999999961 112333444444
Q ss_pred hcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccC
Q 011605 224 LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL 303 (481)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (481)
.++..+ |.++++++|||.. ...+...+...|+...+. .+++.
T Consensus 403 DIar~R-----------------------------------pdLKllIsSAT~D--AekFS~fFDdapIF~iPG-RRyPV 444 (902)
T KOG0923|consen 403 DIARFR-----------------------------------PDLKLLISSATMD--AEKFSAFFDDAPIFRIPG-RRYPV 444 (902)
T ss_pred HHHhhC-----------------------------------CcceEEeeccccC--HHHHHHhccCCcEEeccC-cccce
Confidence 444333 6778999999984 444444444444433333 22222
Q ss_pred cccccccccccCCCchHHHHHHHHH---hcCCCeEEEEecchhhHHHHHHHHhh----cc--ccceeEEEcccccChHHH
Q 011605 304 PERLESYKLICESKLKPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNH----FG--ELRIKIKEYSGLQRQSVR 374 (481)
Q Consensus 304 ~~~~~~~~~~~~~~~k~~~l~~~l~---~~~~~~~lVf~~s~~~~~~l~~~L~~----~~--~~~~~~~~~~~~~~~~~r 374 (481)
.. .|......+.-...+..+++ ..+.+-+|||....++.+...+.|.+ +| ...+-+..+++.++.+..
T Consensus 445 di---~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQ 521 (902)
T KOG0923|consen 445 DI---FYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQ 521 (902)
T ss_pred ee---ecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHH
Confidence 11 11111222222223333332 22568899999998888877777654 23 233457789999999999
Q ss_pred HHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcC------------------CCCChhHHHHHhhhcccCCCCccEE
Q 011605 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD------------------KPAYIKTYIHRAGRTARAGQLGRCF 436 (481)
Q Consensus 375 ~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~------------------~~~s~~~~~Q~~GR~~R~~~~g~~~ 436 (481)
..+++.-..|..+|++||++++.++.|+++..||.-+ .|.|.++-.||.|||||.| +|+||
T Consensus 522 akIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCf 600 (902)
T KOG0923|consen 522 AKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCF 600 (902)
T ss_pred HhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceE
Confidence 9999888899999999999999999999999999744 3356778889999999987 89999
Q ss_pred EEeecch
Q 011605 437 TLLHKDE 443 (481)
Q Consensus 437 ~~~~~~~ 443 (481)
-+|..-.
T Consensus 601 RLYt~~a 607 (902)
T KOG0923|consen 601 RLYTAWA 607 (902)
T ss_pred Eeechhh
Confidence 9998543
No 130
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.81 E-value=2.6e-18 Score=166.64 Aligned_cols=370 Identities=20% Similarity=0.203 Sum_probs=218.1
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (481)
++.+||.--+.++.-....+=+.|+...+|.|||+..+. .+..+...+. ...=|||||...|-+ |.+++.+||+ .
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIa-FlayLkq~g~-~gpHLVVvPsSTleN-WlrEf~kwCP--s 473 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIA-FLAYLKQIGN-PGPHLVVVPSSTLEN-WLREFAKWCP--S 473 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHH-HHHHHHHcCC-CCCcEEEecchhHHH-HHHHHHHhCC--c
Confidence 577888777665442222345679999999999988654 4444444433 345799999988765 9999999999 5
Q ss_pred ceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHh
Q 011605 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 130 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l 209 (481)
+.+..++|....+.+........ ....+|+++||......-.....+.-.+++++|+||+|.+
T Consensus 474 l~Ve~YyGSq~ER~~lR~~i~~~-----------------~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmL 536 (941)
T KOG0389|consen 474 LKVEPYYGSQDERRELRERIKKN-----------------KDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHML 536 (941)
T ss_pred eEEEeccCcHHHHHHHHHHHhcc-----------------CCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhh
Confidence 68888999886555544333211 1357999999987643222211123456899999999965
Q ss_pred hHHHHhhhHHHHHHhcccc-----------------------cccccccccccccccccchhh--------------hhc
Q 011605 210 LREAYQAWLPTVLQLTRSD-----------------------NENRFSDASTFLPSAFGSLKT--------------IRR 252 (481)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~--------------~~~ 252 (481)
-+. ....+..+....++. -+..|.....-+...+..... +.+
T Consensus 537 KN~-~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsr 615 (941)
T KOG0389|consen 537 KNR-TSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISR 615 (941)
T ss_pred hcc-chHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHH
Confidence 433 333333443333222 222222221111111111110 000
Q ss_pred ----------cccccccCCCCCccee---eeeeceeeccCchhhhcccc-------------------------cCCcee
Q 011605 253 ----------CGVERGFKDKPYPRLV---KMVLSATLTQDPNKLAQLDL-------------------------HHPLFL 294 (481)
Q Consensus 253 ----------~~~~~~~~~~~~~~~~---~v~~sat~~~~~~~~~~~~~-------------------------~~~~~~ 294 (481)
...-..+....-|+.+ .+.||..-.......+.... .+|..+
T Consensus 616 AK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~ 695 (941)
T KOG0389|consen 616 AKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLF 695 (941)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHH
Confidence 0000001111112222 22333322111111111110 000000
Q ss_pred ecCC------------------ccc---cCcccc------c------------cccc---ccCCCchHHHHHHHHHhc--
Q 011605 295 TTGE------------------TRY---KLPERL------E------------SYKL---ICESKLKPLYLVALLQSL-- 330 (481)
Q Consensus 295 ~~~~------------------~~~---~~~~~~------~------------~~~~---~~~~~~k~~~l~~~l~~~-- 330 (481)
..-. ... .+.+.. + .+.. .--...|...|..++.+.
T Consensus 696 R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~ 775 (941)
T KOG0389|consen 696 RSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKK 775 (941)
T ss_pred HHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhh
Confidence 0000 000 000000 0 0000 001234666777777655
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCC--ceEEEEccccccCCCCCCCcEEE
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDAMTRGMDVEGVNNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~iLv~t~~l~~Gvdl~~~~~Vi 408 (481)
.++++|+|........-+...|..++ +....+.|.+.-.+|+.+++.|-.++ .-+|++|.+.+.|||+..+++||
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~l~---~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VI 852 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDTLG---YKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVI 852 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHhcC---ceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEE
Confidence 46899999999999888888888777 88999999999999999999998664 45788999999999999999999
Q ss_pred EcCCCCChhHHHHHhhhcccCCCCccE--EEEeecchHH
Q 011605 409 NYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKDEVK 445 (481)
Q Consensus 409 ~~~~~~s~~~~~Q~~GR~~R~~~~g~~--~~~~~~~~~~ 445 (481)
+++...+|-.-.|.--||+|.|+...+ +-+++++..+
T Consensus 853 ihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 853 IHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred EeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 999999999999999999999998544 4456666543
No 131
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.1e-18 Score=169.14 Aligned_cols=318 Identities=17% Similarity=0.219 Sum_probs=183.4
Q ss_pred hhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc-----cCCccEEEEc-ccHHHHHHHHHHHHHhccccCceEEE
Q 011605 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVL-PTRDLALQVKDVFAAIAPAVGLSVGL 134 (481)
Q Consensus 61 ~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~-----~~~~~~lil~-Pt~~L~~q~~~~~~~~~~~~~~~~~~ 134 (481)
.+++.+..+.-+|+||.||||||...- +.++..+ ...+..|-|+ |.+.-+..++.....-+..++-.+..
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvP----QFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVP----QFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccch----HHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 345555556679999999999998632 2333221 1223355554 77666555554433222112222222
Q ss_pred eccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHH
Q 011605 135 AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214 (481)
Q Consensus 135 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~ 214 (481)
...-.. .+.....|.++|.+.|++-+.. .+.+..+++||+||||.- ..+
T Consensus 339 qIRfd~---------------------------ti~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHER--Svn 387 (1172)
T KOG0926|consen 339 QIRFDG---------------------------TIGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHER--SVN 387 (1172)
T ss_pred EEEecc---------------------------ccCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhc--cch
Confidence 111100 1123458999999999987765 366889999999999962 112
Q ss_pred hhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchh-hhcccccCCce
Q 011605 215 QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK-LAQLDLHHPLF 293 (481)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~-~~~~~~~~~~~ 293 (481)
.+.+-.++.++...+.. ++ ..+.....++.|+||||+.-..-. --.++-..|-+
T Consensus 388 TDILiGmLSRiV~LR~k-----------~~--------------ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPl 442 (1172)
T KOG0926|consen 388 TDILIGMLSRIVPLRQK-----------YY--------------KEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPL 442 (1172)
T ss_pred HHHHHHHHHHHHHHHHH-----------Hh--------------hhhcccCceeEEEEeeeEEecccccCceecCCCCce
Confidence 23333333333221100 00 001112355899999999743222 11222222222
Q ss_pred eecCCccccCcccccccccccCCCchHHHHHH---HHHhcCCCeEEEEecchhhHHHHHHHHhhccc-------------
Q 011605 294 LTTGETRYKLPERLESYKLICESKLKPLYLVA---LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE------------- 357 (481)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~---~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~------------- 357 (481)
+......++. .+ ++......+.-.+.... +.++.+.+.+|||+....++.++++.|++..+
T Consensus 443 ikVdARQfPV--sI-HF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k 519 (1172)
T KOG0926|consen 443 IKVDARQFPV--SI-HFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVK 519 (1172)
T ss_pred eeeecccCce--EE-EeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhh
Confidence 2222222211 11 12222222222222333 33455789999999999999999999976311
Q ss_pred --------------------------------------------------------------------------------
Q 011605 358 -------------------------------------------------------------------------------- 357 (481)
Q Consensus 358 -------------------------------------------------------------------------------- 357 (481)
T Consensus 520 ~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~ 599 (1172)
T KOG0926|consen 520 AFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGK 599 (1172)
T ss_pred hccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCC
Confidence
Q ss_pred ---cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCC--------CC----------Ch
Q 011605 358 ---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK--------PA----------YI 416 (481)
Q Consensus 358 ---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~--------~~----------s~ 416 (481)
...-+..+.+-++.++..++++.-.+|..-++|+|+.++..+.||+++.||.-+. -. |.
T Consensus 600 ~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSk 679 (1172)
T KOG0926|consen 600 FSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISK 679 (1172)
T ss_pred CCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeec
Confidence 1123444555555666666666666788888999999999999999999997442 22 33
Q ss_pred hHHHHHhhhcccCCCCccEEEEeecc
Q 011605 417 KTYIHRAGRTARAGQLGRCFTLLHKD 442 (481)
Q Consensus 417 ~~~~Q~~GR~~R~~~~g~~~~~~~~~ 442 (481)
++--||+|||||.| .|.||-+|+..
T Consensus 680 ASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 680 ASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccchhccccCCCC-CCceeehhhhH
Confidence 44559999999987 89999998753
No 132
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.80 E-value=4.4e-17 Score=167.29 Aligned_cols=90 Identities=23% Similarity=0.174 Sum_probs=67.9
Q ss_pred CCCccchhhHHhHHhhhCCCCC-----CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHH-H
Q 011605 47 GISSLFPVQVAVWQETIGPGLF-----ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD-V 120 (481)
Q Consensus 47 ~~~~~~~~Q~~~~~~~~~~~~~-----~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~-~ 120 (481)
|| ++|+-|.+++..+...+.. ++.+++.||||+|||++|++|++...... +.+++|-|.|++|.+|... +
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~---~k~vVIST~T~~LQeQL~~kD 98 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE---KKKLVISTATVALQEQLVSKD 98 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc---CCeEEEEcCCHHHHHHHHhhh
Confidence 66 8999999999988877765 35688999999999999999987655432 3479999999999999864 3
Q ss_pred HHHhcccc--CceEEEeccCcc
Q 011605 121 FAAIAPAV--GLSVGLAVGQSS 140 (481)
Q Consensus 121 ~~~~~~~~--~~~~~~~~g~~~ 140 (481)
+..+.+.+ .++++.+.|...
T Consensus 99 lP~l~~~l~~~~~~~llKGr~n 120 (697)
T PRK11747 99 LPLLLKISGLDFKFTLAKGRGR 120 (697)
T ss_pred hhHHHHHcCCCceEEEEcCccc
Confidence 33332222 466666666554
No 133
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=3.8e-18 Score=170.20 Aligned_cols=363 Identities=17% Similarity=0.164 Sum_probs=218.8
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|. .|++.|.-..-. + +.+-+..+.||-|||+++.+|++-....+ ..+-|++.+..|+..=+.++..+.
T Consensus 75 lG~-r~ydVQliGglv-L-----h~G~IAEMkTGEGKTLvAtLpayLnAL~G----kgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 75 LGK-RPYDVQIIGGII-L-----DLGSVAEMKTGEGKTITSIAPVYLNALTG----KGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred hCC-CcCchHHHHHHH-H-----hcCCeeeecCCCCccHHHHHHHHHHHhcC----CceEEEecchhhhhhhHHHHHHHH
Confidence 576 788888555332 2 34568999999999999888776444443 479999999999998888999999
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcCC-----CcccCCcc
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~~-----~~~~~~~~ 199 (481)
..+|+++++...+.........+ .++|+++|...| ++.|+... ......+.
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY-----------------------~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~ 200 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAY-----------------------ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLN 200 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhc-----------------------cCCCeeecCcccchhhhhhcccccHHHhcCcccc
Confidence 99999999988876655543332 469999998765 33443321 12356788
Q ss_pred EEEEechhHhhHH----------------HHhhhHHHHHHhcccc--------------------------cccccc---
Q 011605 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSD--------------------------NENRFS--- 234 (481)
Q Consensus 200 ~iVvDE~H~l~~~----------------~~~~~~~~l~~~~~~~--------------------------~~~~~~--- 234 (481)
+.||||++.++=+ .....+..+...+... ..+.+.
T Consensus 201 faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n 280 (925)
T PRK12903 201 FCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIEN 280 (925)
T ss_pred eeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhh
Confidence 9999999963211 0111111111110000 000000
Q ss_pred -----------------------------------------------cccccccccccc------hhhhhccccccccCC
Q 011605 235 -----------------------------------------------DASTFLPSAFGS------LKTIRRCGVERGFKD 261 (481)
Q Consensus 235 -----------------------------------------------~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 261 (481)
++....-++... ..++..-.++..|..
T Consensus 281 ~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~ 360 (925)
T PRK12903 281 SELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRL 360 (925)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHh
Confidence 000000000000 000111111112221
Q ss_pred CCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHh-c-CCCeEEEEe
Q 011605 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-L-GEEKCIVFT 339 (481)
Q Consensus 262 ~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~-~~~~~lVf~ 339 (481)
.. ++..||+|.......+...+-.+.+.+++.. +....... -.+......|...+.+.+.. + .+.++||.|
T Consensus 361 Y~----kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnk--P~~R~D~~-d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT 433 (925)
T PRK12903 361 FK----KLSGMTGTAKTEEQEFIDIYNMRVNVVPTNK--PVIRKDEP-DSIFGTKHAKWKAVVKEVKRVHKKGQPILIGT 433 (925)
T ss_pred cc----hhhccCCCCHHHHHHHHHHhCCCEEECCCCC--CeeeeeCC-CcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11 4668888875444444433332322222221 11111111 12333445566555554433 2 577999999
Q ss_pred cchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcC-CceEEEEccccccCCCCCCCc--------EEEEc
Q 011605 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVN--------NVVNY 410 (481)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~iLv~t~~l~~Gvdl~~~~--------~Vi~~ 410 (481)
.|+..++.+++.|.+.+ +...+++......|...+- .+| .-.|.|||+|+++|.||.--. +||..
T Consensus 434 ~SIe~SE~ls~~L~~~g---i~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgT 507 (925)
T PRK12903 434 AQVEDSETLHELLLEAN---IPHTVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGT 507 (925)
T ss_pred CcHHHHHHHHHHHHHCC---CCceeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEec
Confidence 99999999999999877 7777777765544444333 345 347999999999999997322 79999
Q ss_pred CCCCChhHHHHHhhhcccCCCCccEEEEeecchH--------HHHHHHHHHhc
Q 011605 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV--------KRFKKLLQKAD 455 (481)
Q Consensus 411 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~--------~~~~~~~~~~~ 455 (481)
..+.|..--.|..||+||.|.+|.+..|++-.|. +++.+++..+.
T Consensus 508 erheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~r~f~~~~ri~~~~~~l~ 560 (925)
T PRK12903 508 DKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFSNFDKIKEAFKKLG 560 (925)
T ss_pred ccCchHHHHHHHhcccccCCCCCcceEEEecchHHHHHhCCHHHHHHHHHhcC
Confidence 9999988888999999999999999999886543 34555555443
No 134
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=3.7e-18 Score=162.75 Aligned_cols=295 Identities=20% Similarity=0.284 Sum_probs=186.4
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEE-EcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHH
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALV-VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~li-l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 146 (481)
.++-+++.+.||||||... .+.++..+...-.+|- --|.+.-+...++... ...+...+..+|..-..+..
T Consensus 370 ~n~vvvivgETGSGKTTQl----~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa---~EM~~~lG~~VGYsIRFEdv- 441 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQL----AQYLYEDGYADNGMIGCTQPRRVAAISVAKRVA---EEMGVTLGDTVGYSIRFEDV- 441 (1042)
T ss_pred hCcEEEEEecCCCCchhhh----HHHHHhcccccCCeeeecCchHHHHHHHHHHHH---HHhCCccccccceEEEeeec-
Confidence 3666899999999999863 3444443332223333 3477777666555443 22344444434433222211
Q ss_pred HHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcc
Q 011605 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (481)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~ 226 (481)
......|-++|.+.|++-.-. ...+.++++||+||||.-. -..+.+..+++...
T Consensus 442 ----------------------T~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERs--lNtDilfGllk~~l 495 (1042)
T KOG0924|consen 442 ----------------------TSEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERS--LNTDILFGLLKKVL 495 (1042)
T ss_pred ----------------------CCCceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcc--cchHHHHHHHHHHH
Confidence 113347889999988774433 2457889999999999621 11222333333222
Q ss_pred cccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCccc
Q 011605 227 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 306 (481)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (481)
..+ ..+++|++|||. +...+...+...|....++..
T Consensus 496 arR-----------------------------------rdlKliVtSATm--~a~kf~nfFgn~p~f~IpGRT------- 531 (1042)
T KOG0924|consen 496 ARR-----------------------------------RDLKLIVTSATM--DAQKFSNFFGNCPQFTIPGRT------- 531 (1042)
T ss_pred Hhh-----------------------------------ccceEEEeeccc--cHHHHHHHhCCCceeeecCCc-------
Confidence 211 355899999998 445555544444443333322
Q ss_pred ccccccccCCCchHHHHHHHHHhc-------CCCeEEEEecchhhHHHHHHHHhh----c---cccceeEEEcccccChH
Q 011605 307 LESYKLICESKLKPLYLVALLQSL-------GEEKCIVFTSSVESTHRLCTLLNH----F---GELRIKIKEYSGLQRQS 372 (481)
Q Consensus 307 ~~~~~~~~~~~~k~~~l~~~l~~~-------~~~~~lVf~~s~~~~~~l~~~L~~----~---~~~~~~~~~~~~~~~~~ 372 (481)
-.+........-..++...+.+. ..+.+|||....+..+..+..++. . +.-+..+..+.+.++..
T Consensus 532 -yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~d 610 (1042)
T KOG0924|consen 532 -YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPAD 610 (1042)
T ss_pred -cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchh
Confidence 11222222333344455554433 457899999988777766665543 2 12356788899999988
Q ss_pred HHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcC------------------CCCChhHHHHHhhhcccCCCCcc
Q 011605 373 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD------------------KPAYIKTYIHRAGRTARAGQLGR 434 (481)
Q Consensus 373 ~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~------------------~~~s~~~~~Q~~GR~~R~~~~g~ 434 (481)
-..+++..-..|..+++|+|++++..+.+|++..||.-+ .|.|.++-.||.|||||.| +|.
T Consensus 611 lQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~ 689 (1042)
T KOG0924|consen 611 LQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGT 689 (1042)
T ss_pred hhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccc
Confidence 777777777788899999999999999999999999733 3456777889999999986 899
Q ss_pred EEEEeecc
Q 011605 435 CFTLLHKD 442 (481)
Q Consensus 435 ~~~~~~~~ 442 (481)
||-+|...
T Consensus 690 cYRlYTe~ 697 (1042)
T KOG0924|consen 690 CYRLYTED 697 (1042)
T ss_pred eeeehhhh
Confidence 99998864
No 135
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.79 E-value=2.5e-17 Score=170.75 Aligned_cols=78 Identities=23% Similarity=0.220 Sum_probs=65.2
Q ss_pred HHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHH
Q 011605 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 44 ~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
..+....+|+.|.+++..+...+..+..+++.||||+|||++++.+++......+ .+++|.++|+.+.+|..++...
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~---~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG---KKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC---CcEEEECCCHHHHHHHHHhhcc
Confidence 3455569999999999988876666777999999999999999999888766643 5799999999999999887655
Q ss_pred h
Q 011605 124 I 124 (481)
Q Consensus 124 ~ 124 (481)
+
T Consensus 86 ~ 86 (654)
T COG1199 86 I 86 (654)
T ss_pred h
Confidence 4
No 136
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.79 E-value=1.1e-17 Score=168.77 Aligned_cols=368 Identities=17% Similarity=0.151 Sum_probs=213.2
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHh-----ccCCccEEEEcccHHHHHHHHHHHHH
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
..+|.||++-+.++..--.-+=+.|+|..+|-|||+..+--+....+.. .-.....|||||. .|+--|..++.+
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 4678999998665321001134689999999999998653333333222 1123458999999 677779999999
Q ss_pred hccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEE
Q 011605 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 124 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVv 203 (481)
+++. +++..++|......... ..-.+.+|+|++|+.+.+-+.. +.-.++.+.|+
T Consensus 1053 f~pf--L~v~~yvg~p~~r~~lR---------------------~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVL 1106 (1549)
T KOG0392|consen 1053 FFPF--LKVLQYVGPPAERRELR---------------------DQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVL 1106 (1549)
T ss_pred hcch--hhhhhhcCChHHHHHHH---------------------hhccccceEEeeHHHHHHHHHH---HHhcccceEEe
Confidence 9987 56666666654333221 1224569999999998654432 11235779999
Q ss_pred echhHhhHHH--HhhhHHHHHH---hcccccc------cccccccccccccccchhhhhccc------------------
Q 011605 204 DETDRLLREA--YQAWLPTVLQ---LTRSDNE------NRFSDASTFLPSAFGSLKTIRRCG------------------ 254 (481)
Q Consensus 204 DE~H~l~~~~--~~~~~~~l~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------------------ 254 (481)
||-|.+-+.. ....+.++-. ++....+ ..-+.....||+++|..+.+....
T Consensus 1107 DEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~E 1186 (1549)
T KOG0392|consen 1107 DEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQE 1186 (1549)
T ss_pred cCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHH
Confidence 9999663321 1122222222 1111111 112233345566655543332210
Q ss_pred ---------------------cccccCCCCCcceeeeeeceee--------------------------ccCc-------
Q 011605 255 ---------------------VERGFKDKPYPRLVKMVLSATL--------------------------TQDP------- 280 (481)
Q Consensus 255 ---------------------~~~~~~~~~~~~~~~v~~sat~--------------------------~~~~------- 280 (481)
.+.-..+.|...+|=.-+.-++ +...
T Consensus 1187 aG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFq 1266 (1549)
T KOG0392|consen 1187 AGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQ 1266 (1549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHH
Confidence 0001111111111100000000 0000
Q ss_pred -hhhhcccccCCceeecCCccccCcccccccccc------cCCCchHHHHHHHHHhc----------------CCCeEEE
Q 011605 281 -NKLAQLDLHHPLFLTTGETRYKLPERLESYKLI------CESKLKPLYLVALLQSL----------------GEEKCIV 337 (481)
Q Consensus 281 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~k~~~l~~~l~~~----------------~~~~~lV 337 (481)
-...+..+.+|..+.... .+............ .....|...|..++... ..+++||
T Consensus 1267 aLqYlrKLcnHpaLvlt~~-hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLI 1345 (1549)
T KOG0392|consen 1267 ALQYLRKLCNHPALVLTPV-HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILI 1345 (1549)
T ss_pred HHHHHHHhcCCcceeeCCC-cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEE
Confidence 000001111222111110 00000000111111 12344666777777554 2469999
Q ss_pred EecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcC-CceEE-EEccccccCCCCCCCcEEEEcCCCCC
Q 011605 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVL-VSSDAMTRGMDVEGVNNVVNYDKPAY 415 (481)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~iL-v~t~~l~~Gvdl~~~~~Vi~~~~~~s 415 (481)
||+-.....-+.+.|-+..-..+....+.|..+..+|.+++++|.++ .+++| ++|.+.+.|+|+.+++.||+++-.|+
T Consensus 1346 FcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWN 1425 (1549)
T KOG0392|consen 1346 FCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWN 1425 (1549)
T ss_pred eeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCC
Confidence 99999999988888866543334455789999999999999999998 67766 57799999999999999999999999
Q ss_pred hhHHHHHhhhcccCCCC--ccEEEEeecchH
Q 011605 416 IKTYIHRAGRTARAGQL--GRCFTLLHKDEV 444 (481)
Q Consensus 416 ~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~ 444 (481)
|..-+|.+-||.|.||+ -.+|-++.++..
T Consensus 1426 PMrDLQAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1426 PMRDLQAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred chhhHHHHHHHHhhcCceeeeeeeehhcccH
Confidence 99999999999999998 555666666543
No 137
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.77 E-value=2.1e-16 Score=158.86 Aligned_cols=130 Identities=24% Similarity=0.278 Sum_probs=97.2
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|. .|++.|.-. .+.-.++-++.+.||.|||+++.+|++-.... +..+.|++++..|+.+-++++..+.
T Consensus 73 lG~-r~ydvQlig------~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~----G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGL-RHFDVQLIG------GLVLNDGKIAEMKTGEGKTLVATLPAYLNALT----GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCC-CCCchHhhh------hHhhcCCccccccCCCCchHHHHHHHHHHHhc----CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 676 688888443 22235678999999999999998887543333 4479999999999999999999999
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcCC-----CcccCCcc
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~~-----~~~~~~~~ 199 (481)
..+|+.+++..++.+...+...+ .++|+++|...+ .+.|+..- ......+.
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY-----------------------~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~ 198 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNY-----------------------LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFN 198 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhc-----------------------CCCCEecCCccccccchhhccCcChHHhhccccc
Confidence 99999999998887766654433 359999998654 23332211 12356788
Q ss_pred EEEEechhHh
Q 011605 200 YLVVDETDRL 209 (481)
Q Consensus 200 ~iVvDE~H~l 209 (481)
+.||||++.+
T Consensus 199 faIVDEvDSi 208 (870)
T CHL00122 199 YCIIDEVDSI 208 (870)
T ss_pred eeeeecchhh
Confidence 9999999974
No 138
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=2.3e-17 Score=166.91 Aligned_cols=328 Identities=18% Similarity=0.233 Sum_probs=212.0
Q ss_pred cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHH-HhccccC
Q 011605 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA-AIAPAVG 129 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~ 129 (481)
.++.|.+.+..+.+ .+.++++.+|+|||||+++.++++. +....++++++|..+.+..+++.|. ++....|
T Consensus 1144 ~n~iqtqVf~~~y~---~nd~v~vga~~gsgkt~~ae~a~l~-----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYN---TNDNVLVGAPNGSGKTACAELALLR-----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred cCCceEEEEeeeec---ccceEEEecCCCCchhHHHHHHhcC-----CccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 37888877666544 4567999999999999998887765 2445689999999999997777654 4555568
Q ss_pred ceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHh
Q 011605 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 130 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l 209 (481)
..+..++|..+.+.... +..+|+|+||+++-.+ . .....++.|+||+|.+
T Consensus 1216 ~~~~~l~ge~s~~lkl~------------------------~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~i 1265 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDLKLL------------------------QKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLI 1265 (1674)
T ss_pred ceEEecCCccccchHHh------------------------hhcceEEechhHHHHH-h-----hhhhcceEeeehhhhh
Confidence 99999999988766533 2349999999998665 2 3556889999999976
Q ss_pred hHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhccccc
Q 011605 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (481)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~ 289 (481)
. ...+..++-++. .+.... +....++.+.+|..+.+.-.. +...-.
T Consensus 1266 g-g~~g~v~evi~S-~r~ia~-------------------------------q~~k~ir~v~ls~~lana~d~-ig~s~~ 1311 (1674)
T KOG0951|consen 1266 G-GVYGAVYEVICS-MRYIAS-------------------------------QLEKKIRVVALSSSLANARDL-IGASSS 1311 (1674)
T ss_pred c-ccCCceEEEEee-HHHHHH-------------------------------HHHhheeEEEeehhhccchhh-cccccc
Confidence 4 333333333333 111110 001344667777666543322 222222
Q ss_pred CCceeecCCccccCcccccccccccCCCc----hHHHHHHHHHhc-CCCeEEEEecchhhHHHHHHHHhhccc-------
Q 011605 290 HPLFLTTGETRYKLPERLESYKLICESKL----KPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGE------- 357 (481)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~------- 357 (481)
..+.+.++....+....++.+....-... -.....++.+.. .+.+++||++++++|..++..+-.+..
T Consensus 1312 ~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l 1391 (1674)
T KOG0951|consen 1312 GVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYL 1391 (1674)
T ss_pred ceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHH
Confidence 22333333333333233332222211111 122333333333 456899999999999988866532110
Q ss_pred ------------cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEE----cC------CCCC
Q 011605 358 ------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD------KPAY 415 (481)
Q Consensus 358 ------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~----~~------~~~s 415 (481)
.....++-|-+++..+...+...|..|.++++|.... -.|+-...--+|++ |+ .+.+
T Consensus 1392 ~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~ 1470 (1674)
T KOG0951|consen 1392 LSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYP 1470 (1674)
T ss_pred HHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCc
Confidence 1122233388888888888999999999999999877 77877764333443 11 3455
Q ss_pred hhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHh
Q 011605 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (481)
Q Consensus 416 ~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (481)
.+.+.|+.|++.| .|+|+++++..+.+-+++++...
T Consensus 1471 i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~ 1506 (1674)
T KOG0951|consen 1471 IAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEP 1506 (1674)
T ss_pred hhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCc
Confidence 8899999999988 68999999999998888886543
No 139
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.75 E-value=1.5e-17 Score=135.73 Aligned_cols=118 Identities=39% Similarity=0.580 Sum_probs=107.6
Q ss_pred chHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcccc
Q 011605 318 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (481)
Q Consensus 318 ~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l 395 (481)
.|...+...+.+. .++++||||++...++.+++.|.+.+ .++..+||+++..+|..+++.|.++...+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPG---IKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChh
Confidence 5666777777665 37899999999999999999998754 789999999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEE
Q 011605 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (481)
Q Consensus 396 ~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 438 (481)
++|+|+|++++||+++.+++...+.|++||++|.|+.|.++++
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998887764
No 140
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=3.7e-16 Score=143.90 Aligned_cols=331 Identities=21% Similarity=0.278 Sum_probs=193.0
Q ss_pred CCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccC
Q 011605 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~ 100 (481)
.+.|+..+ .++.-.+.+++-- .+--|+++ ...+..+..++-+++.|.||+|||...--..++......
T Consensus 24 ~Npf~~~p------~s~rY~~ilk~R~--~LPvw~~k--~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-- 91 (699)
T KOG0925|consen 24 INPFNGKP------YSQRYYDILKKRR--ELPVWEQK--EEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-- 91 (699)
T ss_pred cCCCCCCc------CcHHHHHHHHHHh--cCchHHhH--HHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--
Confidence 56666666 7777788887532 23233322 122333334677899999999999875444444333322
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCc
Q 011605 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~ 180 (481)
..+..--|.+.-+-+.+ ++.+...++..+.-+|..-..++ |+.+..+. -++|.
T Consensus 92 -~~v~CTQprrvaamsva---~RVadEMDv~lG~EVGysIrfEd--------------C~~~~T~L---------ky~tD 144 (699)
T KOG0925|consen 92 -TGVACTQPRRVAAMSVA---QRVADEMDVTLGEEVGYSIRFED--------------CTSPNTLL---------KYCTD 144 (699)
T ss_pred -cceeecCchHHHHHHHH---HHHHHHhccccchhccccccccc--------------cCChhHHH---------HHhcc
Confidence 23555557776665544 34444446666666665543322 11111111 14666
Q ss_pred hHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccC
Q 011605 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
++|++-.... -.+..+++||+||||.- .--.+.+..+++.....+
T Consensus 145 gmLlrEams~--p~l~~y~viiLDeahER--tlATDiLmGllk~v~~~r------------------------------- 189 (699)
T KOG0925|consen 145 GMLLREAMSD--PLLGRYGVIILDEAHER--TLATDILMGLLKEVVRNR------------------------------- 189 (699)
T ss_pred hHHHHHHhhC--cccccccEEEechhhhh--hHHHHHHHHHHHHHHhhC-------------------------------
Confidence 7766544332 23788999999999962 111233333333332222
Q ss_pred CCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchH-HHHHHHH---HhcCCCeEE
Q 011605 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP-LYLVALL---QSLGEEKCI 336 (481)
Q Consensus 261 ~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~l~~~l---~~~~~~~~l 336 (481)
|.+++|++|||.. ...+...+...|++...+ ..+ .+.++.-.....-+ ..+..++ ..-..+.+|
T Consensus 190 ----pdLk~vvmSatl~--a~Kfq~yf~n~Pll~vpg--~~P----vEi~Yt~e~erDylEaairtV~qih~~ee~GDil 257 (699)
T KOG0925|consen 190 ----PDLKLVVMSATLD--AEKFQRYFGNAPLLAVPG--THP----VEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDIL 257 (699)
T ss_pred ----CCceEEEeecccc--hHHHHHHhCCCCeeecCC--CCc----eEEEecCCCChhHHHHHHHHHHHHHhccCCCCEE
Confidence 5678999999984 333444444445444333 111 11122222222222 2222223 333578899
Q ss_pred EEecchhhHHHHHHHHhhc----c--ccceeEEEcccccChHHHHHHHHHHhc---C--CceEEEEccccccCCCCCCCc
Q 011605 337 VFTSSVESTHRLCTLLNHF----G--ELRIKIKEYSGLQRQSVRSKTLKAFRE---G--KIQVLVSSDAMTRGMDVEGVN 405 (481)
Q Consensus 337 Vf~~s~~~~~~l~~~L~~~----~--~~~~~~~~~~~~~~~~~r~~~~~~f~~---g--~~~iLv~t~~l~~Gvdl~~~~ 405 (481)
||....++.+..++.+... + .....+..++ ..+...+++.... | ..+|+|+|++.+..+.++++.
T Consensus 258 vFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv 333 (699)
T KOG0925|consen 258 VFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIV 333 (699)
T ss_pred EEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEE
Confidence 9999999999999988742 1 1224455555 2233333333321 2 368999999999999999999
Q ss_pred EEEEcC------------------CCCChhHHHHHhhhcccCCCCccEEEEeecc
Q 011605 406 NVVNYD------------------KPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (481)
Q Consensus 406 ~Vi~~~------------------~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 442 (481)
+||.-+ .|-|..+-.||.||+||. +.|+|+.+|.+.
T Consensus 334 ~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 334 FVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 999744 345677888999999996 689999998864
No 141
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=1.4e-17 Score=155.88 Aligned_cols=342 Identities=13% Similarity=0.040 Sum_probs=204.7
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+.-.....+|.+++..+- +|.+.++.-.|.+||++++.++..+.+...+ ....+++.|+.++++...+.+.-..
T Consensus 282 ~~~E~~~~~~~~~~~~~~----~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~V~~ 355 (1034)
T KOG4150|consen 282 NTGESGIAISLELLKFAS----EGRADGGNEARQAGKGTCPTSGSRKFQTLCH--ATNSLLPSEMVEHLRNGSKGQVVHV 355 (1034)
T ss_pred ccccchhhhhHHHHhhhh----hcccccccchhhcCCccCcccchhhhhhcCc--ccceecchhHHHHhhccCCceEEEE
Confidence 444567789988877654 4889999999999999999888877766654 3368899999999876544322111
Q ss_pred ccc----CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCC---CcccCCc
Q 011605 126 PAV----GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR---GFTLEHL 198 (481)
Q Consensus 126 ~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~---~~~~~~~ 198 (481)
... +..+....|.+. .......+-+.+++++.|+.+....-... ...+-..
T Consensus 356 ~~I~~~K~A~V~~~D~~sE----------------------~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~ 413 (1034)
T KOG4150|consen 356 EVIKARKSAYVEMSDKLSE----------------------TTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEE 413 (1034)
T ss_pred EehhhhhcceeecccCCCc----------------------hhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHH
Confidence 100 111111122211 11223344677999999998866543211 1223345
Q ss_pred cEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeecc
Q 011605 199 CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278 (481)
Q Consensus 199 ~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~ 278 (481)
.++++||+|.+... ++.+.+..++.+.......+. .-..+.+-.++|+..
T Consensus 414 ~~~~~~~~~~Y~~~-~~~~~~~~~R~L~~L~~~F~~-----------------------------~~~~~~~~~~~~~K~ 463 (1034)
T KOG4150|consen 414 LCKDTNSCALYLFP-TKALAQDQLRALSDLIKGFEA-----------------------------SINMGVYDGDTPYKD 463 (1034)
T ss_pred HHhcccceeeeecc-hhhHHHHHHHHHHHHHHHHHh-----------------------------hcCcceEeCCCCcCC
Confidence 68899999964322 333333333322221111100 012244455555543
Q ss_pred CchhhhcccccCCceeecCCccccCcccccccc------cccCCCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHH
Q 011605 279 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYK------LICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCT 350 (481)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~ 350 (481)
.........--+.+........+.-......+. .....+.+......++.+. .+-++|.||.+++.|+.+..
T Consensus 464 ~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~ 543 (1034)
T KOG4150|consen 464 RTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLC 543 (1034)
T ss_pred HHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHH
Confidence 333322222111111111111000000000000 0011112222223333222 36799999999999998877
Q ss_pred HHhhc----c-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhh
Q 011605 351 LLNHF----G-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 425 (481)
Q Consensus 351 ~L~~~----~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR 425 (481)
..++. + .+-..+.-+.|+...++|..+...+-.|++.-+|+|++++.|+|+..++.|++.+.|.|.++++|..||
T Consensus 544 ~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GR 623 (1034)
T KOG4150|consen 544 LTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGR 623 (1034)
T ss_pred HHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhcc
Confidence 66542 1 111234457899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEeecchHH
Q 011605 426 TARAGQLGRCFTLLHKDEVK 445 (481)
Q Consensus 426 ~~R~~~~g~~~~~~~~~~~~ 445 (481)
|||.+++..++++.....++
T Consensus 624 AGRRNk~SLavyva~~~PVD 643 (1034)
T KOG4150|consen 624 AGRRNKPSLAVYVAFLGPVD 643 (1034)
T ss_pred ccccCCCceEEEEEeccchh
Confidence 99999998888776655443
No 142
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=1.3e-15 Score=152.94 Aligned_cols=130 Identities=27% Similarity=0.297 Sum_probs=98.2
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
.|. .|++.|.-. .+.-++.-+..+.||-|||+++.+|++-....+ ..+-||+++..||..-++++..+.
T Consensus 82 lG~-r~ydVQliG------gl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~G----kgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 82 LGM-RHFDVQLIG------GMVLHEGQIAEMKTGEGKTLVATLPSYLNALTG----KGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred hCC-CcchhHHHh------hhhhcCCceeeecCCCChhHHHHHHHHHHhhcC----CCeEEEeCCHHHHHhHHHHHHHHH
Confidence 676 788888433 333367779999999999999988877655554 479999999999999999999999
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-----HHHHhc-CCCcccCCcc
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-----MDHINA-TRGFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-----~~~l~~-~~~~~~~~~~ 199 (481)
..+|+.+++..++......... -.++|+++|...+ .+.+.. ........+.
T Consensus 151 ~~LGLtvg~i~~~~~~~err~a-----------------------Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~ 207 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKN-----------------------YACDITYATNSELGFDYLRDNMATDISEVVQRPFN 207 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHh-----------------------cCCCeEEecCCcccccchhhhhcccccccccCccc
Confidence 9999999999887665554333 3569999998766 333332 1223457788
Q ss_pred EEEEechhHh
Q 011605 200 YLVVDETDRL 209 (481)
Q Consensus 200 ~iVvDE~H~l 209 (481)
+.||||++.+
T Consensus 208 faIVDEvDSI 217 (939)
T PRK12902 208 YCVIDEVDSI 217 (939)
T ss_pred eEEEecccce
Confidence 9999999963
No 143
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.72 E-value=3e-16 Score=138.12 Aligned_cols=184 Identities=34% Similarity=0.556 Sum_probs=132.5
Q ss_pred CCCCccchhhHHhHHhhhCCCCCC-CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~-~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.++..++++|.+++..++. . +++++.++||+|||.++..+++..+.... ..++++++|+..++.|+...+...
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~--~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGK--GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccC--CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 5677999999999998876 4 88999999999999988888887766642 348999999999999999999988
Q ss_pred ccccC-ceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCC-cEEEeCchHHHHHHhcCCCcccCCccEEE
Q 011605 125 APAVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV-DILVATPGRLMDHINATRGFTLEHLCYLV 202 (481)
Q Consensus 125 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Ili~T~~~l~~~l~~~~~~~~~~~~~iV 202 (481)
+.... .......+. ....... ....+. +++++|++.+.+.+.... .....++++|
T Consensus 78 ~~~~~~~~~~~~~~~-~~~~~~~---------------------~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iI 134 (201)
T smart00487 78 GPSLGLKVVGLYGGD-SKREQLR---------------------KLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVI 134 (201)
T ss_pred hccCCeEEEEEeCCc-chHHHHH---------------------HHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEE
Confidence 76543 333333332 2222211 122333 999999999999887744 4566788999
Q ss_pred EechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchh
Q 011605 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (481)
Q Consensus 203 vDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~ 282 (481)
+||+|.+....+...+..+..... +..+.+++|||+.+....
T Consensus 135 iDE~h~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~v~~saT~~~~~~~ 176 (201)
T smart00487 135 LDEAHRLLDGGFGDQLEKLLKLLP--------------------------------------KNVQLLLLSATPPEEIEN 176 (201)
T ss_pred EECHHHHhcCCcHHHHHHHHHhCC--------------------------------------ccceEEEEecCCchhHHH
Confidence 999998865445555555555441 233789999999877777
Q ss_pred hhcccccCCceeec
Q 011605 283 LAQLDLHHPLFLTT 296 (481)
Q Consensus 283 ~~~~~~~~~~~~~~ 296 (481)
...........+..
T Consensus 177 ~~~~~~~~~~~~~~ 190 (201)
T smart00487 177 LLELFLNDPVFIDV 190 (201)
T ss_pred HHHHhcCCCEEEeC
Confidence 66666554444433
No 144
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=1.3e-16 Score=158.72 Aligned_cols=372 Identities=18% Similarity=0.154 Sum_probs=225.5
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
-.+++||.+.++.++.-+..+-+.|+...||.|||+..+..+. .+...+.....-+|+||+..|.. |..++..+++
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLit-YLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaP-- 468 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLIT-YLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAP-- 468 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHH-HHHHHcccCCCeEEeccccccCC-chhhcccccc--
Confidence 4899999999999887776677899999999999998765444 44444444556899999999887 8999999876
Q ss_pred CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
.+......|..........-. .-..++|+++|++.+.+--.. +.--++.++||||.|.
T Consensus 469 Sv~~i~YkGtp~~R~~l~~qi-------------------r~gKFnVLlTtyEyiikdk~l---LsKI~W~yMIIDEGHR 526 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTKQQ-------------------RHGKFNVLLTTYEYIIKDKAL---LSKISWKYMIIDEGHR 526 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHHHH-------------------hcccceeeeeeHHHhcCCHHH---HhccCCcceeeccccc
Confidence 455556666554333322111 115689999999988661111 1223467999999998
Q ss_pred hhHHH----------H-------------hhhHHHHHHhcccccccc------cccccccccccccc-------------
Q 011605 209 LLREA----------Y-------------QAWLPTVLQLTRSDNENR------FSDASTFLPSAFGS------------- 246 (481)
Q Consensus 209 l~~~~----------~-------------~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~------------- 246 (481)
|.+.. + ...+..+..++...-+.. |..|.+......|.
T Consensus 527 mKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLII 606 (1157)
T KOG0386|consen 527 MKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLII 606 (1157)
T ss_pred ccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHH
Confidence 64321 0 111122222221111111 12222222111110
Q ss_pred --hhhhh-cc---ccccc-cCCCCCccee---eeeeceee-------------c-------------cCchhhhcccccC
Q 011605 247 --LKTIR-RC---GVERG-FKDKPYPRLV---KMVLSATL-------------T-------------QDPNKLAQLDLHH 290 (481)
Q Consensus 247 --~~~~~-~~---~~~~~-~~~~~~~~~~---~v~~sat~-------------~-------------~~~~~~~~~~~~~ 290 (481)
+..+. +. ..-+. ....| .+.. ..-+||-- . .+.....+..+..
T Consensus 607 rRLHkVLRPFlLRRlKkeVE~~LP-dKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNH 685 (1157)
T KOG0386|consen 607 RRLHKVLRPFLLRRLKKEVEQELP-DKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNH 685 (1157)
T ss_pred HHHHHhhhHHHHHhhhHHHhhhCc-hhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCC
Confidence 00000 00 00000 00000 0000 00011100 0 0000011122223
Q ss_pred CceeecCCccccCcccccccccccCCCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccc
Q 011605 291 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368 (481)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~ 368 (481)
|+.+............ ...+...+.|++.+..++.+. .++++|.||.-......+..+|.-.+ +....+.|.
T Consensus 686 P~lf~~ve~~~~~~~~---~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~---~kYlRLDG~ 759 (1157)
T KOG0386|consen 686 PYLFANVENSYTLHYD---IKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIRE---YKYLRLDGQ 759 (1157)
T ss_pred chhhhhhccccccccC---hhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhh---hheeeecCC
Confidence 3322111111000000 012333566888888888765 58899999998888888888887554 788889999
Q ss_pred cChHHHHHHHHHHhcCC---ceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHH
Q 011605 369 QRQSVRSKTLKAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445 (481)
Q Consensus 369 ~~~~~r~~~~~~f~~g~---~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 445 (481)
+...+|...++.|..-. +.+|..|.+.+.|+|+.-++.||+|+..|++..+.|+.-||.|.|+...+.++....-..
T Consensus 760 TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~s 839 (1157)
T KOG0386|consen 760 TKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNS 839 (1157)
T ss_pred cchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhH
Confidence 99999999999998543 457889999999999999999999999999999999999999999998888876666555
Q ss_pred HHHHHHHH
Q 011605 446 RFKKLLQK 453 (481)
Q Consensus 446 ~~~~~~~~ 453 (481)
.-++++..
T Consensus 840 veE~il~~ 847 (1157)
T KOG0386|consen 840 VEEKILAE 847 (1157)
T ss_pred HHHHHHHH
Confidence 55555544
No 145
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=1.5e-15 Score=157.39 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=68.8
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+.|..+|+.|.+.+..+...+..++++++.+|||+|||++.+.+++.+....+ ...+++|.+.|..-..|..+++++..
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-EVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-ccccEEEEcccchHHHHHHHHHHhhh
Confidence 56777799999999999999988999999999999999999998888766532 33589999999999999999999853
No 146
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.70 E-value=2.6e-15 Score=150.82 Aligned_cols=134 Identities=22% Similarity=0.247 Sum_probs=110.5
Q ss_pred chHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCC--ceEEEEcc
Q 011605 318 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSD 393 (481)
Q Consensus 318 ~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~iLv~t~ 393 (481)
.|+..|.-++++. .++++|||+.-.+...-+...|..+| +-...+.|....++|++.+++|..+. +-+|++|.
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHg---ylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTr 1336 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHG---YLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTR 1336 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcc---eEEEEecCCccHHHHHHHHHHhcCCCceEEEEEecc
Confidence 3555555556554 57899999999999999999998887 88888999999999999999998764 45778999
Q ss_pred ccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHh
Q 011605 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (481)
Q Consensus 394 ~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (481)
..+.|||+.+++.||+|+..|++..-.|.--|+.|.|+...+.+|=.-.....-++|+++.
T Consensus 1337 SggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1337 SGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred CCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhh
Confidence 9999999999999999999999999999999999999987777664444444444555444
No 147
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=7.6e-16 Score=144.22 Aligned_cols=278 Identities=21% Similarity=0.275 Sum_probs=177.5
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhc
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 151 (481)
++=+|||.||||+- +++.+...+ +.++.-|.+-|+.++++.++.. |+.+..++|.......-.
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~ak----sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~----- 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKSAK----SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN----- 256 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhhhc----cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC-----
Confidence 44599999999975 556666543 6899999999999999999887 889989999765432200
Q ss_pred cccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHh-hhHHHHHHhcccccc
Q 011605 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ-AWLPTVLQLTRSDNE 230 (481)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~-~~~~~l~~~~~~~~~ 230 (481)
...++.+-||.++..- -..+++.|+||.+.|.+.+.+ .|-+.++...+..
T Consensus 257 ------------------~~~a~hvScTVEM~sv---------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE-- 307 (700)
T KOG0953|consen 257 ------------------GNPAQHVSCTVEMVSV---------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE-- 307 (700)
T ss_pred ------------------CCcccceEEEEEEeec---------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhh--
Confidence 0225677788765411 235889999999987665433 3444444443221
Q ss_pred cccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCccccccc
Q 011605 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 310 (481)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (481)
++.-.--+-+ +-........ .+. -.++.|
T Consensus 308 ------------------------------------iHLCGepsvl-dlV~~i~k~T----------Gd~----vev~~Y 336 (700)
T KOG0953|consen 308 ------------------------------------IHLCGEPSVL-DLVRKILKMT----------GDD----VEVREY 336 (700)
T ss_pred ------------------------------------hhccCCchHH-HHHHHHHhhc----------CCe----eEEEee
Confidence 0110000000 0000000000 000 011111
Q ss_pred ccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhc--CCceE
Q 011605 311 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GKIQV 388 (481)
Q Consensus 311 ~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~i 388 (481)
....+-.. .+.+..-+.....+-++|.++ .+....+...+.+.+. ..++++.|+++.+.|.+.-..|.+ ++++|
T Consensus 337 eRl~pL~v-~~~~~~sl~nlk~GDCvV~FS-kk~I~~~k~kIE~~g~--~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv 412 (700)
T KOG0953|consen 337 ERLSPLVV-EETALGSLSNLKPGDCVVAFS-KKDIFTVKKKIEKAGN--HKCAVIYGSLPPETRLAQAALFNDPSNECDV 412 (700)
T ss_pred cccCccee-hhhhhhhhccCCCCCeEEEee-hhhHHHHHHHHHHhcC--cceEEEecCCCCchhHHHHHHhCCCCCccce
Confidence 11111111 112333455556677766554 6778888888888763 458899999999999999999986 88999
Q ss_pred EEEccccccCCCCCCCcEEEEcCCC---------CChhHHHHHhhhcccCCCC---ccEEEEeecchHHHHHHHHH
Q 011605 389 LVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYIHRAGRTARAGQL---GRCFTLLHKDEVKRFKKLLQ 452 (481)
Q Consensus 389 Lv~t~~l~~Gvdl~~~~~Vi~~~~~---------~s~~~~~Q~~GR~~R~~~~---g~~~~~~~~~~~~~~~~~~~ 452 (481)
||||+++++|+|+ +++.||+++.- ....+..|..|||||.|.. |.+..+ ...|...+.++++
T Consensus 413 lVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl-~~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 413 LVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL-HSEDLKLLKRILK 486 (700)
T ss_pred EEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe-eHhhHHHHHHHHh
Confidence 9999999999999 68999998754 2366888999999998754 555555 4456666666654
No 148
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.69 E-value=8.3e-17 Score=117.92 Aligned_cols=77 Identities=36% Similarity=0.627 Sum_probs=72.8
Q ss_pred HHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCC
Q 011605 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (481)
Q Consensus 351 ~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~ 430 (481)
.|+..+ +.+..+||+++..+|..+++.|.+++..+||+|+++++|+|+|++++||++++++++..|.|++||++|.|
T Consensus 2 ~L~~~~---~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKG---IKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTT---SSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCC---CcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 455555 89999999999999999999999999999999999999999999999999999999999999999999976
No 149
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.65 E-value=1.9e-14 Score=138.25 Aligned_cols=136 Identities=18% Similarity=0.184 Sum_probs=110.5
Q ss_pred CCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcC-CceEEEEc
Q 011605 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSS 392 (481)
Q Consensus 316 ~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~iLv~t 392 (481)
...|+..|.+++.+. .++++|+|+.-.+....+.++|...+ +....+.|.....+|..++.+|+.. .+-+|++|
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~---Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLST 1102 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRG---YTYLRLDGSSKASDRRDVVRDWQASDIFVFLLST 1102 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhc---cceEEecCcchhhHHHHHHhhccCCceEEEEEec
Confidence 445666777777655 57899999999999999999998766 8888899999999999999999965 45678899
Q ss_pred cccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHh
Q 011605 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (481)
Q Consensus 393 ~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (481)
.+.+.|+|+..++.||+|+..|++..-.|...||.|.|+...+.+|-.-.....-+++++..
T Consensus 1103 RAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA 1164 (1185)
T KOG0388|consen 1103 RAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERA 1164 (1185)
T ss_pred ccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHh
Confidence 99999999999999999999999999999999999999986655553332233333444433
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=1.1e-14 Score=147.86 Aligned_cols=136 Identities=18% Similarity=0.227 Sum_probs=103.7
Q ss_pred CCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc
Q 011605 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (481)
Q Consensus 316 ~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~ 393 (481)
...|...+.+.+... .+.++||-+.|+...+.+++.|...+ ++.-+++......|.+.+-++-+.| .|.|||+
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~g---I~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRK---IPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcC---CcHHHhhccchhhHHHHHHhcCCCC--cEEEecc
Confidence 345555555444332 57799999999999999999999876 6666677766555555554443333 7899999
Q ss_pred ccccCCCCC--------CCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchH-------HHHHHHHHHhcC
Q 011605 394 AMTRGMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKADN 456 (481)
Q Consensus 394 ~l~~Gvdl~--------~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~ 456 (481)
|+++|.||. +-=+||....+.|...-.|..||+||.|.+|.+..|++-.|. +++.++++.+..
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fgs~ri~~~m~~~g~ 762 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGL 762 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhCcHHHHHHHHHcCC
Confidence 999999997 233788888999999999999999999999999999886543 556777776643
No 151
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.62 E-value=1.8e-15 Score=131.37 Aligned_cols=147 Identities=22% Similarity=0.227 Sum_probs=90.1
Q ss_pred ccchhhHHhHHhhhCCCCC---CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011605 50 SLFPVQVAVWQETIGPGLF---ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~---~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (481)
+|+++|.+++..++..+.. .+++++.+|||+|||++++..+... .. ++++++|+..|+.|+...+..+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l-~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILEL-AR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHH-HC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcc-cc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 6899999999998865433 4779999999999999877544433 22 699999999999999999976654
Q ss_pred ccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCC----------CcccC
Q 011605 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR----------GFTLE 196 (481)
Q Consensus 127 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~----------~~~~~ 196 (481)
.. ............... ....................+++++|++.+........ .....
T Consensus 76 ~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
T PF04851_consen 76 EK-YNFFEKSIKPAYDSK---------EFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN 145 (184)
T ss_dssp TS-EEEEE--GGGCCE-S---------EEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG
T ss_pred hh-hhhcccccccccccc---------cccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc
Confidence 32 111100000000000 00000000001111223456899999999987764311 12345
Q ss_pred CccEEEEechhHhhHHH
Q 011605 197 HLCYLVVDETDRLLREA 213 (481)
Q Consensus 197 ~~~~iVvDE~H~l~~~~ 213 (481)
.+++||+||||++....
T Consensus 146 ~~~~vI~DEaH~~~~~~ 162 (184)
T PF04851_consen 146 KFDLVIIDEAHHYPSDS 162 (184)
T ss_dssp SESEEEEETGGCTHHHH
T ss_pred cCCEEEEehhhhcCCHH
Confidence 67899999999986665
No 152
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.60 E-value=7.2e-14 Score=129.25 Aligned_cols=109 Identities=19% Similarity=0.196 Sum_probs=92.4
Q ss_pred CeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcC-CceEE-EEccccccCCCCCCCcEEEEc
Q 011605 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVL-VSSDAMTRGMDVEGVNNVVNY 410 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~iL-v~t~~l~~Gvdl~~~~~Vi~~ 410 (481)
-+.|||.+.......+.-.|.+.| +.+.-+.|+|+...|.+.++.|.++ ++.|+ ++-.+.+..+|+..+++|++.
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaG---fscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmm 715 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAG---FSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMM 715 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccC---ceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEee
Confidence 478999998888888887888777 8999999999999999999999987 56665 455788888999999999999
Q ss_pred CCCCChhHHHHHhhhcccCCCC--ccEEEEeecchH
Q 011605 411 DKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEV 444 (481)
Q Consensus 411 ~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~ 444 (481)
++.|+++.-+|...|..|.|+. -+++.|+-.+..
T Consensus 716 DPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 716 DPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred cccccHHHHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 9999999999999999999986 455555555443
No 153
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.60 E-value=7e-14 Score=134.52 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=89.7
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHh--cCCceE-EEEccccccCCCCCCCcEE
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR--EGKIQV-LVSSDAMTRGMDVEGVNNV 407 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~--~g~~~i-Lv~t~~l~~Gvdl~~~~~V 407 (481)
.+++++|...=.....-+..+|++.| .....++|....++|..+++.|. +|..+| |+.-.+.+.|+|+-+.+|+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g---~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHl 821 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGG---HIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHL 821 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCC---eeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceE
Confidence 56788887776667777788888877 88889999999999999999997 343555 4555788899999999999
Q ss_pred EEcCCCCChhHHHHHhhhcccCCCCccEEEE
Q 011605 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (481)
Q Consensus 408 i~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 438 (481)
|+.++.|+++--.|..-|.-|.|+...++++
T Consensus 822 ilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 822 ILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred EEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 9999999999999999999999999777766
No 154
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.59 E-value=7.2e-14 Score=115.59 Aligned_cols=121 Identities=39% Similarity=0.655 Sum_probs=90.2
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHh
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 149 (481)
+++++.++||+|||.+++..+......+ ...++++++|+..++.|+.+.+...... +..+....+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~--~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL--KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE---- 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc--cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH----
Confidence 3689999999999999888777765552 3458999999999999999988888754 56666666665443332
Q ss_pred hccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHh
Q 011605 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215 (481)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~ 215 (481)
.......+|+++|++.+........ .....++++|+||+|.+......
T Consensus 74 -----------------~~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~ 121 (144)
T cd00046 74 -----------------KLLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFG 121 (144)
T ss_pred -----------------HHhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchH
Confidence 1123467999999999988776533 33557889999999988655433
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.54 E-value=2.3e-14 Score=106.27 Aligned_cols=81 Identities=43% Similarity=0.709 Sum_probs=74.6
Q ss_pred HHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhc
Q 011605 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (481)
Q Consensus 347 ~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~ 426 (481)
.+++.|+..+ ..+..+||.++..+|..+++.|.++...+||+|+++++|+|+|.++.||+++++++...|.|++||+
T Consensus 2 ~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELG---IKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCC---CeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 3556666654 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 011605 427 ARAG 430 (481)
Q Consensus 427 ~R~~ 430 (481)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9975
No 156
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.54 E-value=1.2e-12 Score=133.83 Aligned_cols=355 Identities=19% Similarity=0.169 Sum_probs=195.9
Q ss_pred ccchhhHHhHHhhhCCCCC--CCC--EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 50 SLFPVQVAVWQETIGPGLF--ERD--LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~--~~~--~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
.-+.||-+|++.+..-..+ .+. ++--|.||+|||++=.- ++..+..+ ..+.+..|..-.+.|--|.-..+++-+
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~-~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDD-KQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCC-CCCceEEEEccccceeccchHHHHHhc
Confidence 4567999998876642211 223 45589999999986322 34444443 466789999999999999999999887
Q ss_pred cccCceEEEeccCcchHHHHHHHhhcccc--ccCc----------------cCC----hhhHHHhhcC--------CCcE
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKL--EAGI----------------CYD----PEDVLQELQS--------AVDI 175 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~----------------~~~----~~~~~~~~~~--------~~~I 175 (481)
...+-..+++.|+....+-.......... ..+. ..+ .......+.. ...+
T Consensus 486 ~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv 565 (1110)
T TIGR02562 486 NLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPV 565 (1110)
T ss_pred CCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCe
Confidence 65566778888887654332211110000 0000 000 1111111111 2569
Q ss_pred EEeCchHHHHHHhcCC--CcccC--C--ccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhh
Q 011605 176 LVATPGRLMDHINATR--GFTLE--H--LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (481)
Q Consensus 176 li~T~~~l~~~l~~~~--~~~~~--~--~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (481)
+|||++.++......+ ...+. . -+.|||||+|.+-.. ....+..++.....
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~---------------------- 622 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGL---------------------- 622 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHH----------------------
Confidence 9999999988764322 22111 1 258999999976333 33344444443322
Q ss_pred hhccccccccCCCCCcceeeeeeceeeccCchhhhc-ccc----------c---CCceeecCC-ccccC-------cc--
Q 011605 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LDL----------H---HPLFLTTGE-TRYKL-------PE-- 305 (481)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~-~~~----------~---~~~~~~~~~-~~~~~-------~~-- 305 (481)
.+.+++++|||+++.....+. .+. . .+..+...- .++.. ..
T Consensus 623 ---------------lG~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F 687 (1110)
T TIGR02562 623 ---------------LGSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEF 687 (1110)
T ss_pred ---------------cCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHH
Confidence 234789999999876443211 110 0 111111100 00000 00
Q ss_pred -------------------ccccccc--ccCCCc----hHHHHHHHH--------Hhc----C-CCe----EEEEecchh
Q 011605 306 -------------------RLESYKL--ICESKL----KPLYLVALL--------QSL----G-EEK----CIVFTSSVE 343 (481)
Q Consensus 306 -------------------~~~~~~~--~~~~~~----k~~~l~~~l--------~~~----~-~~~----~lVf~~s~~ 343 (481)
..+.-.. +..... ....+...+ +.+ + .++ .||-..+++
T Consensus 688 ~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~ 767 (1110)
T TIGR02562 688 IQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANID 767 (1110)
T ss_pred HHHHHHHHHHHHHHHhcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCch
Confidence 0000000 001100 111111111 111 1 222 588888899
Q ss_pred hHHHHHHHHhhcc---ccceeEEEcccccChHHHHHHHHHH----------------------hc----CCceEEEEccc
Q 011605 344 STHRLCTLLNHFG---ELRIKIKEYSGLQRQSVRSKTLKAF----------------------RE----GKIQVLVSSDA 394 (481)
Q Consensus 344 ~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~r~~~~~~f----------------------~~----g~~~iLv~t~~ 394 (481)
.+-.+++.|-... ...+.+.++|+......|..+.+.. .+ +...|+|+|++
T Consensus 768 p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv 847 (1110)
T TIGR02562 768 PLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPV 847 (1110)
T ss_pred HHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeee
Confidence 9999988876542 1235577899999877777666543 11 35679999999
Q ss_pred cccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCC--ccEEEEeecchHHHH
Q 011605 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRF 447 (481)
Q Consensus 395 l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~ 447 (481)
++.|+|+. .+.+| ..+.+..+++|++||+.|.+.. +..=+++...+...+
T Consensus 848 ~E~g~D~d-fd~~~--~~~~~~~sliQ~aGR~~R~~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 848 EEVGRDHD-YDWAI--ADPSSMRSIIQLAGRVNRHRLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred EEEEeccc-CCeee--eccCcHHHHHHHhhcccccccCCCCCCcEEEeHhHHHHh
Confidence 99999984 55553 3445699999999999997754 222233334444444
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.54 E-value=4.4e-13 Score=135.49 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=78.9
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhc
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 151 (481)
.+..+.+|+|||.+|+-.+...+..+ ..+|+++|...|..|+.+.++..+. +..++.++++.+..+....+.
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~~G----k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~-- 234 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLRAG----RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWL-- 234 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHcC----CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHH--
Confidence 34444469999999987776666654 3799999999999999999988763 256888888887776654443
Q ss_pred cccccCccCChhhHHHhhcC-CCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 152 PKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~-~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
.+.. ...|+|+|-..+ ...+.++.+|||||-|.
T Consensus 235 ----------------~~~~G~~~IViGtRSAv--------FaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 235 ----------------AVLRGQARVVVGTRSAV--------FAPVEDLGLVAIWDDGD 268 (665)
T ss_pred ----------------HHhCCCCcEEEEcceeE--------EeccCCCCEEEEEcCCc
Confidence 3333 479999994432 24678899999999994
No 158
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.49 E-value=2.6e-11 Score=115.07 Aligned_cols=338 Identities=16% Similarity=0.226 Sum_probs=208.7
Q ss_pred HHhccCCccEEEEcccHHHHHHHHHHHHHhcccc-Cc--------eEEEeccC----------cchHHHHHHHh---hcc
Q 011605 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GL--------SVGLAVGQ----------SSIADEISELI---KRP 152 (481)
Q Consensus 95 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~--------~~~~~~g~----------~~~~~~~~~~~---~~~ 152 (481)
...+-.+|+||||+|++..|-++.+.+.+++... .+ ..+.-.++ .....+...+. .+.
T Consensus 31 RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD 110 (442)
T PF06862_consen 31 RDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDD 110 (442)
T ss_pred hccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccc
Confidence 3344567899999999999999999888876541 00 00000000 00000111100 000
Q ss_pred ccccCccCChhhHHHhh-cCCCcEEEeCchHHHHHHhcC----CCc-ccCCccEEEEechhHhhHHHHhhhHHHHHHhcc
Q 011605 153 KLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINAT----RGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~~-~~~~~Ili~T~~~l~~~l~~~----~~~-~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~ 226 (481)
....|+.++...+.-.. -.+.||+|++|=.|...+... ... -++++.++|+|.+|.+ .....+++..++..+.
T Consensus 111 ~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l-~MQNW~Hv~~v~~~lN 189 (442)
T PF06862_consen 111 CFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVL-LMQNWEHVLHVFEHLN 189 (442)
T ss_pred eEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHH-HHhhHHHHHHHHHHhc
Confidence 01111111111111100 135789999999998877641 122 4899999999999966 4556778888888776
Q ss_pred cccccccccccccccccc-cchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCC---ceeecCCc---
Q 011605 227 SDNENRFSDASTFLPSAF-GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP---LFLTTGET--- 299 (481)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~---~~~~~~~~--- 299 (481)
................|+ ...... --|.+++|+...++...+....+.+. +.+.....
T Consensus 190 ~~P~~~~~~DfsRVR~w~Ldg~a~~---------------~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g 254 (442)
T PF06862_consen 190 LQPKKSHDTDFSRVRPWYLDGQAKY---------------YRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASG 254 (442)
T ss_pred cCCCCCCCCCHHHHHHHHHcCcchh---------------eeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccce
Confidence 655444333333332222 211111 12788999888877766655543321 11111111
Q ss_pred -----cccCccccccccc---ccCCCchHHHHHH-HH---H-hcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcc
Q 011605 300 -----RYKLPERLESYKL---ICESKLKPLYLVA-LL---Q-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366 (481)
Q Consensus 300 -----~~~~~~~~~~~~~---~~~~~~k~~~l~~-~l---~-~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~ 366 (481)
...+......+.. ....+.+...... ++ . ....+++|||++|.-+--.+.++|++.+ ...+.++
T Consensus 255 ~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~---~sF~~i~ 331 (442)
T PF06862_consen 255 VISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKEN---ISFVQIS 331 (442)
T ss_pred eeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcC---CeEEEec
Confidence 1111222222221 1112233333222 22 2 3345789999999999999999999655 8888899
Q ss_pred cccChHHHHHHHHHHhcCCceEEEEccccc--cCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCC------CccEEEE
Q 011605 367 GLQRQSVRSKTLKAFREGKIQVLVSSDAMT--RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ------LGRCFTL 438 (481)
Q Consensus 367 ~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~--~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~------~g~~~~~ 438 (481)
-..+..+..+....|..|+.+||+.|.-+- +-..+.++++||+|++|..+.-|...+........ ...|.++
T Consensus 332 EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~l 411 (442)
T PF06862_consen 332 EYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVL 411 (442)
T ss_pred ccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEE
Confidence 999999999999999999999999997644 56889999999999999998877777765544332 4899999
Q ss_pred eecchHHHHHHHH
Q 011605 439 LHKDEVKRFKKLL 451 (481)
Q Consensus 439 ~~~~~~~~~~~~~ 451 (481)
+++.|.-+++.|+
T Consensus 412 ysk~D~~~LErIV 424 (442)
T PF06862_consen 412 YSKYDALRLERIV 424 (442)
T ss_pred ecHhHHHHHHHHh
Confidence 9999999988886
No 159
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.41 E-value=7.1e-12 Score=135.56 Aligned_cols=123 Identities=20% Similarity=0.196 Sum_probs=103.9
Q ss_pred chHHHHHHHH-Hh--cCCC--eEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcC--CceEEE
Q 011605 318 LKPLYLVALL-QS--LGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLV 390 (481)
Q Consensus 318 ~k~~~l~~~l-~~--~~~~--~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~iLv 390 (481)
.|...+.+++ .. ..+. ++++|++......-+...+...+ .....++|+++..+|...++.|.++ ..-+++
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~---~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~ll 768 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALG---IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLL 768 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcC---CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEE
Confidence 5666666666 22 2455 89999999999999999998876 6789999999999999999999986 445667
Q ss_pred EccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecch
Q 011605 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (481)
Q Consensus 391 ~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 443 (481)
++.+.+.|+|+..+++||++++.|++....|...|+.|.|+...+.++-....
T Consensus 769 s~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~ 821 (866)
T COG0553 769 SLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITR 821 (866)
T ss_pred EecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecC
Confidence 78899999999999999999999999999999999999999877766644433
No 160
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.40 E-value=1.8e-12 Score=119.34 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=65.0
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhcc--CCccEEEEcccHHHHHHHHHHHHH
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~--~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
|.| .||+.|.+.+..+...+..+.++++.+|||+|||++++.+++..+...+. .+.+++|.++|..+.+|...++++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 456 57999999988888888788999999999999999999999877665432 234899999999998888777776
Q ss_pred h
Q 011605 124 I 124 (481)
Q Consensus 124 ~ 124 (481)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 5
No 161
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.40 E-value=1.8e-12 Score=119.34 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=65.0
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhcc--CCccEEEEcccHHHHHHHHHHHHH
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~--~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
|.| .||+.|.+.+..+...+..+.++++.+|||+|||++++.+++..+...+. .+.+++|.++|..+.+|...++++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 456 57999999988888888788999999999999999999999877665432 234899999999998888777776
Q ss_pred h
Q 011605 124 I 124 (481)
Q Consensus 124 ~ 124 (481)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 5
No 162
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.39 E-value=1.7e-11 Score=121.85 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=99.7
Q ss_pred hHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccc-------------------cceeEEEcccccChHHHHHH
Q 011605 319 KPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGE-------------------LRIKIKEYSGLQRQSVRSKT 377 (481)
Q Consensus 319 k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~-------------------~~~~~~~~~~~~~~~~r~~~ 377 (481)
|.-.|.++++.. -+.+.|||.+|......|..+|.--.. .+...+.+.|.....+|..+
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 444566666554 478999999999988888877753110 23467788999999999999
Q ss_pred HHHHhcC-C---ceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEee
Q 011605 378 LKAFREG-K---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440 (481)
Q Consensus 378 ~~~f~~g-~---~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 440 (481)
.+.|.+- + .-.||+|.+.+.|+|+-.++.||+|+..|+|.--.|.+=|+-|.|+...||+|=.
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRF 1273 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhh
Confidence 9999743 2 2368999999999999999999999999999999999999999999999998843
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.36 E-value=1.7e-10 Score=115.48 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=74.5
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCC--cEEE
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV--NNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~--~~Vi 408 (481)
.+.++.||+++...++.+++..+... ..+..+++.-+..+ + +.+ ++.+|++-|+.+..|+++-.. +.|+
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~---~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~Sf~~~HF~~~f 351 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFT---KKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLSFEEKHFDSMF 351 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcC---CeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEeccchhhceEEE
Confidence 46678899999999999999888775 67888877665542 2 222 568999999999999999753 3355
Q ss_pred EcCCC----CChhHHHHHhhhcccCCCCccEEEEeecc
Q 011605 409 NYDKP----AYIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (481)
Q Consensus 409 ~~~~~----~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 442 (481)
.|-.| .+..+..|++||+ |.-.+...+++++..
T Consensus 352 ~yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 352 AYVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDAS 388 (824)
T ss_pred EEecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEecc
Confidence 44222 2355789999999 544567888887754
No 164
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.33 E-value=1.9e-11 Score=122.99 Aligned_cols=366 Identities=20% Similarity=0.197 Sum_probs=202.8
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|. .++..| ++..+.-+.+-+..+-||-|||+++.+|+.-.... +..+.+++...-|+.--+.++..+.
T Consensus 77 lg~-~~~dVQ------liG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~----gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 77 LGM-RHFDVQ------LLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA----GKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred cCC-ChhhHH------HhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC----CCCcEEeeehHHhhhhCHHHHHHHH
Confidence 565 566666 33333346778999999999999998886544333 3479999999999998899999999
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhc-----CCCcccCCcc
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINA-----TRGFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~-----~~~~~~~~~~ 199 (481)
..+|+++++...+.+...+...+ .|+|..+|...+ .+.+.. ........+.
T Consensus 146 ~~LGlsvG~~~~~m~~~ek~~aY-----------------------~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~ 202 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEKRAAY-----------------------ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLN 202 (822)
T ss_pred HHcCCceeeccCCCChHHHHHHH-----------------------hcCceeccccccCcchhhhhhhccHHHhhhccCC
Confidence 99999999999998776665444 348999997655 122211 1112355678
Q ss_pred EEEEechhHhhHH----------------HHhhhHHHHHHhccccc---cc------------------ccccccccccc
Q 011605 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDN---EN------------------RFSDASTFLPS 242 (481)
Q Consensus 200 ~iVvDE~H~l~~~----------------~~~~~~~~l~~~~~~~~---~~------------------~~~~~~~~~~~ 242 (481)
+.|+||++.++=+ .....+..+...+.... .+ .|.....+..+
T Consensus 203 faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~e 282 (822)
T COG0653 203 FAIVDEVDSILIDEARTPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLE 282 (822)
T ss_pred eEEEcchhheeeeccccceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchh
Confidence 8899998863211 01111111111111000 00 00000000000
Q ss_pred ccc----------ch-------hhhhccccccccCCCCCc---------ce-----------------------------
Q 011605 243 AFG----------SL-------KTIRRCGVERGFKDKPYP---------RL----------------------------- 267 (481)
Q Consensus 243 ~~~----------~~-------~~~~~~~~~~~~~~~~~~---------~~----------------------------- 267 (481)
... .. .++-+++..........+ ++
T Consensus 283 n~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR 362 (822)
T COG0653 283 NVNLVHHLNQALRAHILFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFR 362 (822)
T ss_pred hHHHHhhHHHHHHHHHHhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHh
Confidence 000 00 000000000000000000 00
Q ss_pred ---eeeeeceeeccCchhhhcccccCCceeecCCccccCccccccccc-ccCCCchHHHHHH-HHHhc-CCCeEEEEecc
Q 011605 268 ---VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL-ICESKLKPLYLVA-LLQSL-GEEKCIVFTSS 341 (481)
Q Consensus 268 ---~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~l~~-~l~~~-~~~~~lVf~~s 341 (481)
....||.|.......+...+..+.+.+..... .. +...... ......|...+.. +...+ .+.++||-+.+
T Consensus 363 ~y~kl~gmTGTa~te~~EF~~iY~l~vv~iPTnrp--~~--R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~s 438 (822)
T COG0653 363 LYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTNRP--II--RLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVS 438 (822)
T ss_pred hhhhhcCCCCcchhhhhhhhhccCCceeeccCCCc--cc--CCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcc
Confidence 12234444433323333333222222222211 11 1111111 2223345444433 33333 57899999999
Q ss_pred hhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCc-----------EEEEc
Q 011605 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN-----------NVVNY 410 (481)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~-----------~Vi~~ 410 (481)
++..+.+.+.|.+.+ ++.-.++......|.+.+-.+-+ .-.+-|+|+|+++|.||.--. +||-.
T Consensus 439 ie~SE~ls~~L~~~~---i~h~VLNAk~h~~EA~Iia~AG~--~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgT 513 (822)
T COG0653 439 IEKSELLSKLLRKAG---IPHNVLNAKNHAREAEIIAQAGQ--PGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGT 513 (822)
T ss_pred eecchhHHHHHHhcC---CCceeeccccHHHHHHHHhhcCC--CCccccccccccCCcccccCCCHHHHHHhCCcEEEec
Confidence 999999999999877 66666666665544444333322 336789999999999986322 35656
Q ss_pred CCCCChhHHHHHhhhcccCCCCccEEEEeecchH-------HHHHHHHHHh
Q 011605 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKA 454 (481)
Q Consensus 411 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~~~~~~ 454 (481)
....|..--.|..||+||.|-+|.+..|++-.|. +.+..+++.+
T Consensus 514 ERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~L~r~F~~d~~~~~~~~l 564 (822)
T COG0653 514 ERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDDLMRRFASDRLPALMDKL 564 (822)
T ss_pred ccchhhHHHHHhhcccccCCCcchhhhhhhhHHHHHHHhcchhhHHHHHhh
Confidence 6666666666999999999987888888765432 4455555554
No 165
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.31 E-value=2.1e-10 Score=121.54 Aligned_cols=114 Identities=20% Similarity=0.167 Sum_probs=75.5
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 148 (481)
++..+++--+|||||++....+- .+... ...+++++|+-++.|-.|....+..+........ ...+..+-
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~-~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~L---- 342 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLAR-LLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSEL---- 342 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHH-HHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHH----
Confidence 35699999999999998655433 33333 5678999999999999999999998865432111 22222221
Q ss_pred hhccccccCccCChhhHHHhhcC-CCcEEEeCchHHHHHHhcCCCc-ccCCccEEEEechhHh
Q 011605 149 IKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRL 209 (481)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~T~~~l~~~l~~~~~~-~~~~~~~iVvDE~H~l 209 (481)
.+.+.. ...|+|||.++|-......... .-.+--++|+||||+-
T Consensus 343 -----------------k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS 388 (962)
T COG0610 343 -----------------KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS 388 (962)
T ss_pred -----------------HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc
Confidence 122222 2489999999998877653111 1222337899999963
No 166
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.29 E-value=5.6e-11 Score=93.87 Aligned_cols=104 Identities=19% Similarity=0.185 Sum_probs=64.5
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 148 (481)
|+--++...+|+|||.-.+.-++..... .+.++|++.||+.++..+.+.++.. ++. .-+.-....
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~---~~~rvLvL~PTRvva~em~~aL~~~----~~~--~~t~~~~~~------ 68 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK---RRLRVLVLAPTRVVAEEMYEALKGL----PVR--FHTNARMRT------ 68 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH---TT--EEEEESSHHHHHHHHHHTTTS----SEE--EESTTSS--------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH---ccCeEEEecccHHHHHHHHHHHhcC----Ccc--cCceeeecc------
Confidence 4456889999999998765544443333 3558999999999999887777633 222 221111100
Q ss_pred hhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHh
Q 011605 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l 209 (481)
...+.-|-++|+..+.+.+... ....++++||+||||-.
T Consensus 69 --------------------~~g~~~i~vMc~at~~~~~~~p--~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 69 --------------------HFGSSIIDVMCHATYGHFLLNP--CRLKNYDVIIMDECHFT 107 (148)
T ss_dssp ----------------------SSSSEEEEEHHHHHHHHHTS--SCTTS-SEEEECTTT--
T ss_pred --------------------ccCCCcccccccHHHHHHhcCc--ccccCccEEEEeccccC
Confidence 0133468899999988877652 34678999999999954
No 167
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.22 E-value=2.7e-11 Score=113.83 Aligned_cols=130 Identities=21% Similarity=0.171 Sum_probs=79.6
Q ss_pred hhHHhHHhhhCCC---------CCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCC--ccEEEEcccHHHHHHHHHHHH
Q 011605 54 VQVAVWQETIGPG---------LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC--LRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 54 ~Q~~~~~~~~~~~---------~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~--~~~lil~Pt~~L~~q~~~~~~ 122 (481)
||.+++..++... ...++++++..+|+|||++++..+. .+....... .++||++|. .+..||..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 4666666554432 3356799999999999998765444 333321111 249999999 88889999999
Q ss_pred HhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHH-----HHHhcCCCcccCC
Q 011605 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-----DHINATRGFTLEH 197 (481)
Q Consensus 123 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~-----~~l~~~~~~~~~~ 197 (481)
+++.....++....|....... . .......+++|+|++.+. ..... +...+
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~----~-----------------~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~ 134 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRL----S-----------------KNQLPKYDVVITTYETLRKARKKKDKED---LKQIK 134 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHT----T-----------------SSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSE
T ss_pred cccccccccccccccccccccc----c-----------------ccccccceeeeccccccccccccccccc---ccccc
Confidence 9986545677777776611110 0 111245689999999998 21111 11234
Q ss_pred ccEEEEechhHh
Q 011605 198 LCYLVVDETDRL 209 (481)
Q Consensus 198 ~~~iVvDE~H~l 209 (481)
+++||+||+|.+
T Consensus 135 ~~~vIvDEaH~~ 146 (299)
T PF00176_consen 135 WDRVIVDEAHRL 146 (299)
T ss_dssp EEEEEETTGGGG
T ss_pred ceeEEEeccccc
Confidence 899999999987
No 168
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.21 E-value=1.9e-10 Score=113.99 Aligned_cols=388 Identities=17% Similarity=0.196 Sum_probs=204.2
Q ss_pred ccCCCCcccccCCCCCCcccCCCCCCCC-----CCCHHHHHHHHH-----------CCCC---ccchhhHHhHHhhhCCC
Q 011605 6 KKSMPVLPWMRSPVDVSLFEDCPLDHLP-----CLDPRLKVALQN-----------MGIS---SLFPVQVAVWQETIGPG 66 (481)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~l~~~~~~-----------~~~~---~~~~~Q~~~~~~~~~~~ 66 (481)
.-++|..+|.++...++.|..+++++-+ .+++......++ +.+. ..-.+-.++++ ..
T Consensus 315 ~~~~s~i~wapP~anwn~w~A~nide~~la~~~~~s~~q~~~~~~~~~~d~e~~~~~a~re~lpva~~~~~i~q----~v 390 (1282)
T KOG0921|consen 315 ICSASNISWAPPLQNWNPWRASNIDEEPLAFMSMESISQRIMEKERFKRDEALDKITAQREELPVAQYRSEILQ----AV 390 (1282)
T ss_pred hccCCCCCCCCccccccccccccCcccccccccccCcccchhhhhhhhcccchhhhhhhhhhCcHHHHHHHHHH----HH
Confidence 3467889999999999999999877653 111111111111 0000 00111112222 22
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCC-ccEEEEcccHHHHHHHHHHHH-HhccccCceEEEeccCcchHHH
Q 011605 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPTRDLALQVKDVFA-AIAPAVGLSVGLAVGQSSIADE 144 (481)
Q Consensus 67 ~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~-~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~ 144 (481)
..+.-+++.+.||+|||..+.-.+++.+..+.... ..+.+--|++..+.-+++.+. +-+...+-. +|.....+.
T Consensus 391 ~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~t----vgy~vRf~S 466 (1282)
T KOG0921|consen 391 AENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGET----CGYNVRFDS 466 (1282)
T ss_pred hcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccc----ccccccccc
Confidence 23566899999999999998888888887764322 345555577776665555432 222222111 111110000
Q ss_pred HHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHh
Q 011605 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224 (481)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~ 224 (481)
..-...--|.++|.+-+.+.++.. +..++++|+||.|...- ..+.+..+++-
T Consensus 467 ----------------------a~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv--~~dfll~~lr~ 518 (1282)
T KOG0921|consen 467 ----------------------ATPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDV--DTDFVLIVLRE 518 (1282)
T ss_pred ----------------------cccccccceeeeccchhhhhhhhc----ccccccccchhhhhhcc--chHHHHHHHHh
Confidence 000112268999999998888763 45688999999996321 22333333322
Q ss_pred cccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCcc----
Q 011605 225 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR---- 300 (481)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~---- 300 (481)
+...-... ....+ ..++..+-+...+...+ +.+++++|.+-. .+...++..+.........
T Consensus 519 m~~ty~dl---~v~lm------satIdTd~f~~~f~~~p----~~~~~grt~pvq--~F~led~~~~~~~vp~~~~~~k~ 583 (1282)
T KOG0921|consen 519 MISTYRDL---RVVLM------SATIDTDLFTNFFSSIP----DVTVHGRTFPVQ--SFFLEDIIQMTQFVPSEPSQKKR 583 (1282)
T ss_pred hhccchhh---hhhhh------hcccchhhhhhhhcccc----ceeeccccccHH--HHHHHHhhhhhhccCCCcCccch
Confidence 21111000 00000 01111111111111111 234455554311 1111111111110000000
Q ss_pred -----------------ccC-------cccccccccccCCCchHHHHHHHHH----hcCCCeEEEEecchhhHHHHHHHH
Q 011605 301 -----------------YKL-------PERLESYKLICESKLKPLYLVALLQ----SLGEEKCIVFTSSVESTHRLCTLL 352 (481)
Q Consensus 301 -----------------~~~-------~~~~~~~~~~~~~~~k~~~l~~~l~----~~~~~~~lVf~~s~~~~~~l~~~L 352 (481)
... ...................+.+++. ..-.+-++||.+-......++..+
T Consensus 584 k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~l 663 (1282)
T KOG0921|consen 584 KKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRL 663 (1282)
T ss_pred hhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhh
Confidence 000 0000000000111111222222222 223567899999999999998887
Q ss_pred hhccc----cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcC-----------------
Q 011605 353 NHFGE----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD----------------- 411 (481)
Q Consensus 353 ~~~~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~----------------- 411 (481)
..... ....+...|+-....+...+.+....|..++++.|.+.+..+.+.++..|++.+
T Consensus 664 l~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~A 743 (1282)
T KOG0921|consen 664 LEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYA 743 (1282)
T ss_pred hhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeee
Confidence 65321 234566788888888888888888899999999999999888887766666532
Q ss_pred -CCCChhHHHHHhhhcccCCCCccEEEEeecchHH
Q 011605 412 -KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445 (481)
Q Consensus 412 -~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 445 (481)
--.+..+..|+.||+||. ++|.|+..+++..+.
T Consensus 744 tvw~sktn~eqr~gr~grv-R~G~~f~lcs~arF~ 777 (1282)
T KOG0921|consen 744 TVWASKTNLEQRKGRAGRV-RPGFCFHLCSRARFE 777 (1282)
T ss_pred eecccccchHhhcccCcee-cccccccccHHHHHH
Confidence 113466889999999997 689999998865443
No 169
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=2.7e-09 Score=100.31 Aligned_cols=380 Identities=17% Similarity=0.225 Sum_probs=216.2
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEE-ECCCCchh--HHHhHHHHHHHHHHh---------------------------c
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCI-NSPTGSGK--TLSYALPIVQTLSNR---------------------------A 98 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~-~~~tG~GK--T~~~~~~~~~~l~~~---------------------------~ 98 (481)
..+++.|.+.+..+.+ -++++. .+..+.|+ +-+|.+.++..+.+. +
T Consensus 215 ~pltalQ~~L~~~m~~----YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG 290 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFN----YRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQG 290 (698)
T ss_pred CcchHHHHHHHHHHHh----hhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcC
Confidence 4677888877665433 566543 33344555 344556666666331 1
Q ss_pred cCCccEEEEcccHHHHHHHHHHHHHhccccCc-----------------eEEEeccCcchHHHHHHHh---hccccccCc
Q 011605 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGL-----------------SVGLAVGQSSIADEISELI---KRPKLEAGI 158 (481)
Q Consensus 99 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-----------------~~~~~~g~~~~~~~~~~~~---~~~~~~~~~ 158 (481)
-.++++|||||+++-|..+...+..++.+.+- ....-....+..+....+. .+.....+.
T Consensus 291 ~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl 370 (698)
T KOG2340|consen 291 FTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGL 370 (698)
T ss_pred CCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhH
Confidence 24689999999999999888888777543211 0000011111111111111 011112222
Q ss_pred cCChhhHHHhhc-CCCcEEEeCchHHHHHHhcCC----Cc-ccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccc
Q 011605 159 CYDPEDVLQELQ-SAVDILVATPGRLMDHINATR----GF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232 (481)
Q Consensus 159 ~~~~~~~~~~~~-~~~~Ili~T~~~l~~~l~~~~----~~-~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~ 232 (481)
++....+.-... ...+|+||+|=.|.-.+.... .+ .++++.++|||.+|.++.. ..+++..++.++.......
T Consensus 371 ~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~Q-NwEhl~~ifdHLn~~P~k~ 449 (698)
T KOG2340|consen 371 AFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQ-NWEHLLHIFDHLNLQPSKQ 449 (698)
T ss_pred HHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHh-hHHHHHHHHHHhhcCcccc
Confidence 233222222211 247999999988877765321 12 3788999999999987655 4567777777765544443
Q ss_pred cccccccccccc-cchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhccccc--------CCceeecCC--ccc
Q 011605 233 FSDASTFLPSAF-GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH--------HPLFLTTGE--TRY 301 (481)
Q Consensus 233 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~--------~~~~~~~~~--~~~ 301 (481)
......+..-|+ .......+ |++++|+-.......+....+. .++.-.... ...
T Consensus 450 h~~DfSRVR~wyL~~qsr~~r---------------Qtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~ 514 (698)
T KOG2340|consen 450 HDVDFSRVRMWYLDGQSRYFR---------------QTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGI 514 (698)
T ss_pred cCCChhheehheeccHHHHHH---------------HHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccc
Confidence 333333322222 11111111 4455555444333332222221 111111011 111
Q ss_pred cCccccccc---ccccCCCchHHHH-HHHHHhc---CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHH
Q 011605 302 KLPERLESY---KLICESKLKPLYL-VALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (481)
Q Consensus 302 ~~~~~~~~~---~~~~~~~~k~~~l-~~~l~~~---~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r 374 (481)
.+....+.+ ......+.++... ..++.+. ....+||+.++.=+--.+..++++.. +....+|.-.+...-
T Consensus 515 ~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~---i~F~~i~EYssk~~v 591 (698)
T KOG2340|consen 515 PLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEE---ISFVMINEYSSKSKV 591 (698)
T ss_pred hhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhh---cchHHHhhhhhHhhh
Confidence 111111111 1112223333332 2233333 23468999999999999999999866 667777776667777
Q ss_pred HHHHHHHhcCCceEEEEccccc--cCCCCCCCcEEEEcCCCCChh---HHHHHhhhcccCCC----CccEEEEeecchHH
Q 011605 375 SKTLKAFREGKIQVLVSSDAMT--RGMDVEGVNNVVNYDKPAYIK---TYIHRAGRTARAGQ----LGRCFTLLHKDEVK 445 (481)
Q Consensus 375 ~~~~~~f~~g~~~iLv~t~~l~--~Gvdl~~~~~Vi~~~~~~s~~---~~~Q~~GR~~R~~~----~g~~~~~~~~~~~~ 445 (481)
.+..+.|-.|..++|+-|.-+. +-.++.++..||+|.+|.+|. +++.+.+|..-.|+ .-.|.+++++.|.-
T Consensus 592 sRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i 671 (698)
T KOG2340|consen 592 SRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRI 671 (698)
T ss_pred hHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhH
Confidence 7778889999999999997644 568999999999999999866 56677777654442 26888999999988
Q ss_pred HHHHHH
Q 011605 446 RFKKLL 451 (481)
Q Consensus 446 ~~~~~~ 451 (481)
.++.++
T Consensus 672 ~Le~iv 677 (698)
T KOG2340|consen 672 RLENIV 677 (698)
T ss_pred HHHHhh
Confidence 887775
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.92 E-value=2.2e-08 Score=89.66 Aligned_cols=132 Identities=23% Similarity=0.235 Sum_probs=94.6
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 45 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
..|+ .|++.|.-+.-.+ .++-++.+.||-|||+++.++++-.... |..+-|++.+..|+..-++++..+
T Consensus 73 ~~g~-~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a~~~AL~----G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPAALNALQ----GKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp HTS-----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHHHHHHTT----SS-EEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHHHHHHHh----cCCcEEEeccHHHhhccHHHHHHH
Confidence 3676 8999998876554 3344999999999999988776655444 347999999999999989999999
Q ss_pred ccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHH-HHhcCC----Cc-ccCCc
Q 011605 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD-HINATR----GF-TLEHL 198 (481)
Q Consensus 125 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~-~l~~~~----~~-~~~~~ 198 (481)
...+|+++....++.+.......+. ++|+++|...+.- .+...- .. ....+
T Consensus 142 y~~LGlsv~~~~~~~~~~~r~~~Y~-----------------------~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~ 198 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEERREAYA-----------------------ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGF 198 (266)
T ss_dssp HHHTT--EEEEETTTEHHHHHHHHH-----------------------SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSS
T ss_pred HHHhhhccccCccccCHHHHHHHHh-----------------------CcccccccchhhHHHHHHHHhhccchhccCCC
Confidence 9999999999999988665544433 3899999887743 333211 11 25678
Q ss_pred cEEEEechhHhh
Q 011605 199 CYLVVDETDRLL 210 (481)
Q Consensus 199 ~~iVvDE~H~l~ 210 (481)
.++||||++.++
T Consensus 199 ~~~ivDEvDs~L 210 (266)
T PF07517_consen 199 DFAIVDEVDSIL 210 (266)
T ss_dssp SEEEECTHHHHT
T ss_pred CEEEEeccceEE
Confidence 999999999864
No 171
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.90 E-value=1.1e-06 Score=85.95 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=68.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhcccc----ceeEEEcccccChHHHHHHHHHHh----cCCceEEEE--ccccccCCC
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGEL----RIKIKEYSGLQRQSVRSKTLKAFR----EGKIQVLVS--SDAMTRGMD 400 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~----~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~iLv~--t~~l~~Gvd 400 (481)
-++.+++|++|.+-...+.+...+.|.. +.+..++-..-. -+.+++.|. .|.-.+|++ -.-+++|||
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 4589999999999999999888765531 112222222211 345666665 344456655 478999999
Q ss_pred CCC--CcEEEEcCCCCC--------------------------------hhHHHHHhhhcccCCCCccEEEEe
Q 011605 401 VEG--VNNVVNYDKPAY--------------------------------IKTYIHRAGRTARAGQLGRCFTLL 439 (481)
Q Consensus 401 l~~--~~~Vi~~~~~~s--------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~ 439 (481)
+.+ ++.||..+.|.. +....|.+|||.|.-++=.+++++
T Consensus 705 F~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~Ll 777 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLL 777 (821)
T ss_pred cccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEe
Confidence 987 778888776632 113449999999986663333333
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.78 E-value=1.3e-09 Score=110.24 Aligned_cols=275 Identities=15% Similarity=0.130 Sum_probs=159.9
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (481)
...+.|.+.+..... ...++++-+|||+|||..+.+++...+... ++.++++++|-++|...-...+.......|
T Consensus 927 ~fn~~q~~if~~~y~---td~~~~~g~ptgsgkt~~ae~a~~~~~~~~--p~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYH---TDLNFLLGAPTGSGKTVVAELAIFRALSYY--PGSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred ccCCccceEEEEEee---cchhhhhcCCccCcchhHHHHHHHHHhccC--CCccEEEEcCCchhhcccccchhhhcccCC
Confidence 556777666544332 357799999999999999988877766664 456999999999999987777776655448
Q ss_pred ceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCc-ccCCccEEEEechhH
Q 011605 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDR 208 (481)
Q Consensus 130 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~-~~~~~~~iVvDE~H~ 208 (481)
+++..++|+...+... -..++++|+||+++....+++... -+.+++.+|+||.|+
T Consensus 1002 ~k~ie~tgd~~pd~~~------------------------v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hl 1057 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPDVKA------------------------VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHL 1057 (1230)
T ss_pred ceeEeccCccCCChhh------------------------eecCceEEcccccccCccccccchhhhccccceeeccccc
Confidence 8999999988765331 135699999999987777665433 477899999999997
Q ss_pred hhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccc
Q 011605 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 288 (481)
Q Consensus 209 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~ 288 (481)
+. .+.+.-++.+..+.... .....+.++.+.+|--+....+-.-++..
T Consensus 1058 lg-~~rgPVle~ivsr~n~~-------------------------------s~~t~~~vr~~glsta~~na~dla~wl~~ 1105 (1230)
T KOG0952|consen 1058 LG-EDRGPVLEVIVSRMNYI-------------------------------SSQTEEPVRYLGLSTALANANDLADWLNI 1105 (1230)
T ss_pred cc-CCCcceEEEEeeccccC-------------------------------ccccCcchhhhhHhhhhhccHHHHHHhCC
Confidence 53 32332222222221110 00111223444444333322222222233
Q ss_pred cCCceeecCCccccCccccccccc----ccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhcc-ccceeEE
Q 011605 289 HHPLFLTTGETRYKLPERLESYKL----ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIK 363 (481)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~ 363 (481)
.+...+....+..++...++.+.. ........+...++....+..+++||++++.....-+..|-.+- ...-+..
T Consensus 1106 ~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~ 1185 (1230)
T KOG0952|consen 1106 KDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQ 1185 (1230)
T ss_pred CCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHHhhccCCCCchh
Confidence 333333333333333222222211 12223334455565666678899999998776555554443321 1111222
Q ss_pred EcccccChHHHHHHHHHHhcCCce
Q 011605 364 EYSGLQRQSVRSKTLKAFREGKIQ 387 (481)
Q Consensus 364 ~~~~~~~~~~r~~~~~~f~~g~~~ 387 (481)
+. .|+..|-+.++...++.+++
T Consensus 1186 fl--~~de~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1186 FL--NMDELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred cc--CCCHHHHHHHHHHhcccchh
Confidence 33 34466666667666665544
No 173
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.72 E-value=5.7e-08 Score=82.03 Aligned_cols=107 Identities=20% Similarity=0.251 Sum_probs=71.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccc-cceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc--ccccCCCCCC--Cc
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD--AMTRGMDVEG--VN 405 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~--~l~~Gvdl~~--~~ 405 (481)
.++++|||++|....+.+.+.++.... .+..+.. . +..++..+++.|++++-.||+++. .+.+|+|+|+ ++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~-q---~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV-Q---GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE-S---TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeee-c---CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhh
Confidence 369999999999999999999886531 1122222 2 355688999999999999999998 9999999997 77
Q ss_pred EEEEcCCCCC-h-----------------------------hHHHHHhhhcccCCCCccEEEEeec
Q 011605 406 NVVNYDKPAY-I-----------------------------KTYIHRAGRTARAGQLGRCFTLLHK 441 (481)
Q Consensus 406 ~Vi~~~~~~s-~-----------------------------~~~~Q~~GR~~R~~~~g~~~~~~~~ 441 (481)
.||..+.|.. + ..+.|.+||+.|...+--+++++++
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 8998887731 1 1233999999998776444444443
No 174
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.69 E-value=2.5e-07 Score=91.03 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=94.6
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccc---------------cceeEEEcccccChHHHHHHHHHHhcC-Cc--eEEEEcc
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGE---------------LRIKIKEYSGLQRQSVRSKTLKAFREG-KI--QVLVSSD 393 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~---------------~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~--~iLv~t~ 393 (481)
+.++|||..+......|.+.|.+... .+.......|..+..+|+.+++.|.+- .+ -++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 46899999998888888877765310 112334577888899999999999743 33 4677899
Q ss_pred ccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHH
Q 011605 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451 (481)
Q Consensus 394 ~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 451 (481)
....|+|+=+.+.+++++.-|++.--.|.+-|+-|.|+...||+|=..-|...-++|.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIy 856 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIY 856 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHH
Confidence 9999999998889999999999999999999999999999999996655555555554
No 175
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.59 E-value=3.4e-07 Score=95.02 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=41.1
Q ss_pred CceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccC
Q 011605 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (481)
Q Consensus 385 ~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~ 429 (481)
..+.|++.+++.+|.|.|++=.+.......|...-.|.+||..|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 578999999999999999988888888888899999999999994
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.56 E-value=1.4e-07 Score=85.08 Aligned_cols=68 Identities=26% Similarity=0.314 Sum_probs=48.9
Q ss_pred cchhhHHhHHhhhCCCCCCCC-EEEECCCCchhHHHhHHHHHHHHH-----HhccCCccEEEEcccHHHHHHHHHHHHH
Q 011605 51 LFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLS-----NRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~-~l~~~~tG~GKT~~~~~~~~~~l~-----~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
+++.|.+|+..++. ... .++.||+|||||.+... ++..+. .....+.++|+++|+..-+++..+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALS----SNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67889999988775 556 89999999999976544 333331 1234567899999999999998888877
No 177
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.36 E-value=1.4e-06 Score=87.59 Aligned_cols=163 Identities=15% Similarity=0.140 Sum_probs=102.8
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc--------------------------
Q 011605 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------------------------- 98 (481)
Q Consensus 45 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~-------------------------- 98 (481)
++.| +|++.|...+..++..+....++++..|||+|||+..+-..+.+....+
T Consensus 17 ~fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 17 EFPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 3555 8999999999999988877889999999999999986655555542211
Q ss_pred ------------cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHH---------------HHHHh--
Q 011605 99 ------------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE---------------ISELI-- 149 (481)
Q Consensus 99 ------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---------------~~~~~-- 149 (481)
-..++++|-.-|.....|..+++++..=. ++..++.+.....-+ +....
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~ 173 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKS 173 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhccc
Confidence 02467888889998899999999877432 333333333221111 11110
Q ss_pred ------------hccccccCccC--------------ChhhHHHhhcCCCcEEEeCchHHHHHHhcCC-CcccCCccEEE
Q 011605 150 ------------KRPKLEAGICY--------------DPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLV 202 (481)
Q Consensus 150 ------------~~~~~~~~~~~--------------~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~-~~~~~~~~~iV 202 (481)
+.++......+ =|-...+.+.+.++|++|=|..|.+...+.. .+++. =++||
T Consensus 174 ~~C~f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lk-nsIVI 252 (945)
T KOG1132|consen 174 RSCHFYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLK-NSIVI 252 (945)
T ss_pred ccccccccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhcccccccc-ccEEE
Confidence 00000000000 0233336667789999999999987665532 22332 36899
Q ss_pred EechhHhhH
Q 011605 203 VDETDRLLR 211 (481)
Q Consensus 203 vDE~H~l~~ 211 (481)
|||||++.+
T Consensus 253 fDEAHNiEd 261 (945)
T KOG1132|consen 253 FDEAHNIED 261 (945)
T ss_pred EeccccHHH
Confidence 999998633
No 178
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.27 E-value=8.1e-06 Score=73.51 Aligned_cols=133 Identities=17% Similarity=0.099 Sum_probs=83.4
Q ss_pred ccchhhHHhHHhhhCC----CC--CCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHH
Q 011605 50 SLFPVQVAVWQETIGP----GL--FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~----~~--~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
.++..|.+++-.+... +. ....+++-..||.||-.+....+++.+.++ +.+.|+++.+..|..+..++++.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G---r~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG---RKRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC---CCceEEEECChhhhhHHHHHHHH
Confidence 4667777765444311 11 235589999999999998777778877775 33799999999999999999998
Q ss_pred hccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCC--Cc-------c
Q 011605 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR--GF-------T 194 (481)
Q Consensus 124 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~--~~-------~ 194 (481)
+... .+.+..+..-.. .+ ...-.-.|+++||..|........ .. +
T Consensus 114 IG~~-~i~v~~l~~~~~-~~------------------------~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W 167 (303)
T PF13872_consen 114 IGAD-NIPVHPLNKFKY-GD------------------------IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDW 167 (303)
T ss_pred hCCC-cccceechhhcc-Cc------------------------CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHH
Confidence 8543 232222222000 00 001123699999999877643211 00 1
Q ss_pred c-CCc-cEEEEechhHhhH
Q 011605 195 L-EHL-CYLVVDETDRLLR 211 (481)
Q Consensus 195 ~-~~~-~~iVvDE~H~l~~ 211 (481)
+ .++ .+|||||||.+.+
T Consensus 168 ~g~dfdgvivfDEcH~akn 186 (303)
T PF13872_consen 168 CGEDFDGVIVFDECHKAKN 186 (303)
T ss_pred HhcCCCceEEeccchhcCC
Confidence 1 222 4899999998643
No 179
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.26 E-value=1.4e-06 Score=88.24 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=87.9
Q ss_pred CeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCC-ce-EEEEccccccCCCCCCCcEEEEc
Q 011605 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQ-VLVSSDAMTRGMDVEGVNNVVNY 410 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-iLv~t~~l~~Gvdl~~~~~Vi~~ 410 (481)
++++||+.-+.-+..+.-.|...+ .....+.|.|....|...+..|..+. .. ++++..+...|+++..+.+|+..
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~---~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~ 616 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKG---FVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLM 616 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcc---cccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhh
Confidence 489999999998888888887555 77788999999999999999999553 23 45667889999999999999999
Q ss_pred CCCCChhHHHHHhhhcccCCCCccEEE
Q 011605 411 DKPAYIKTYIHRAGRTARAGQLGRCFT 437 (481)
Q Consensus 411 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~ 437 (481)
++-|++....|.+-|+.|.|+...+.+
T Consensus 617 d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 617 DPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred chhcChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999999999866555
No 180
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.26 E-value=0.0001 Score=74.40 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=41.1
Q ss_pred CCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhccc
Q 011605 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (481)
Q Consensus 384 g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R 428 (481)
...++|++.+++-+|.|=|++=.+.-.....|..+=+|-+||..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLR 526 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLR 526 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhcccee
Confidence 357899999999999999998878888888899999999999999
No 181
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.23 E-value=2.3e-06 Score=73.60 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=40.0
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
-.+..|..+++.++. .+-+++.+|.|||||+.++..+++.+..+. -.+++|+-|....
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~--~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGE--YDKIIITRPPVEA 61 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS---SEEEEEE-S--T
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCC--CcEEEEEecCCCC
Confidence 346788888888773 567899999999999999998998887753 3378888888653
No 182
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.08 E-value=1.5e-05 Score=77.28 Aligned_cols=66 Identities=26% Similarity=0.268 Sum_probs=49.2
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHH
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (481)
..+.+-|..|....++ ...-.++.||+|+|||.+...-+.+.+.++ .++|+.+||..-++.+.+.+
T Consensus 184 ~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~----k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK----KRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC----CeEEEEcCchHHHHHHHHHh
Confidence 4778888888877665 123478999999999998665455444443 38999999999888777643
No 183
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.07 E-value=5.9e-05 Score=65.54 Aligned_cols=124 Identities=22% Similarity=0.284 Sum_probs=75.3
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 45 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
+.++ -+|+.|.+...+++.. ..++|.+..+-+|.|||.+. +|++..+..++. +.+.++-.++|..|....+...
T Consensus 19 e~~i-liR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~---~LvrviVpk~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 19 ESNI-LIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVI-VPMLALALADGS---RLVRVIVPKALLEQMRQMLRSR 92 (229)
T ss_pred HcCc-eeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchH-HHHHHHHHcCCC---cEEEEEcCHHHHHHHHHHHHHH
Confidence 3455 8999999999998865 35788999999999999876 455555554322 3444444458999988887766
Q ss_pred cccc-CceEEEeccC--cchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHH
Q 011605 125 APAV-GLSVGLAVGQ--SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (481)
Q Consensus 125 ~~~~-~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l 187 (481)
+... +-.+..+.=+ ........... ............|+++||+.+.++.
T Consensus 93 lg~l~~r~i~~lpFsR~~~~~~~~~~~~-------------~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 93 LGGLLNRRIYHLPFSRSTPLTPETLEKI-------------RQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred HHHHhCCeeEEecccCCCCCCHHHHHHH-------------HHHHHHHHHcCCEEEeChHHHHHHH
Confidence 5432 4333333222 22211111111 0111222334579999999886653
No 184
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.06 E-value=3.8e-05 Score=72.95 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=57.6
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+.|...+|.|.+-+.++-..+-.+.+.++.+|+|+|||.+.+..++......+..-.++++..-|..-.+....+++.+.
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l~ 91 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRLM 91 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHHH
Confidence 46778889998877776666666788999999999999887665555444444455578888777666666666655543
No 185
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.06 E-value=1.1e-05 Score=78.71 Aligned_cols=86 Identities=20% Similarity=0.209 Sum_probs=67.0
Q ss_pred HHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHH
Q 011605 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (481)
Q Consensus 42 ~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (481)
.+...|+..++.-|..|+.+++. ..=.++.+|+|+|||.+...-++ .+... ...++|+++|+..-++|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVy-hl~~~--~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVY-HLARQ--HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHH-HHHHh--cCCceEEEcccchhHHHHHHHH
Confidence 45567899999999999999885 55589999999999998755444 44443 2447999999999999999999
Q ss_pred HHhccccCceEEEeccC
Q 011605 122 AAIAPAVGLSVGLAVGQ 138 (481)
Q Consensus 122 ~~~~~~~~~~~~~~~g~ 138 (481)
.+. |+++.-+...
T Consensus 475 h~t----gLKVvRl~ak 487 (935)
T KOG1802|consen 475 HKT----GLKVVRLCAK 487 (935)
T ss_pred Hhc----CceEeeeehh
Confidence 887 6666555443
No 186
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.00 E-value=0.00011 Score=76.51 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=39.6
Q ss_pred CCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHh
Q 011605 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224 (481)
Q Consensus 171 ~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~ 224 (481)
....|++.||..+..-+-. ..+++..+..|||||||++.......++-.++..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~ 58 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQ 58 (814)
T ss_pred hcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHH
Confidence 3458999999999776655 3478899999999999998766555555555543
No 187
>PF13245 AAA_19: Part of AAA domain
Probab=97.96 E-value=4.5e-05 Score=54.53 Aligned_cols=52 Identities=33% Similarity=0.461 Sum_probs=38.3
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHH
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (481)
+-++|.+|+|+|||.+.+-.+...+......+.++++++|++..++++.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3356699999999987665555555431122568999999999999877777
No 188
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.95 E-value=3e-05 Score=67.41 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=43.3
Q ss_pred ccchhhHHhHHhhhCCCCCCC-CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHH
Q 011605 50 SLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~-~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~ 120 (481)
++++-|.+++..++. .+. -.++.++.|+|||.+. ..+...+... +.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~---g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILT---SGDRVSVLQGPAGTGKTTLL-KALAEALEAA---GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHH---CTCSEEEEEESTTSTHHHHH-HHHHHHHHHT---T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---cCCeEEEEEECCCCCHHHHH-HHHHHHHHhC---CCeEEEECCcHHHHHHHHHh
Confidence 367889999998875 133 3778899999999863 3344444442 45899999998887765444
No 189
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.89 E-value=8e-05 Score=76.45 Aligned_cols=69 Identities=23% Similarity=0.215 Sum_probs=52.4
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
..++..|.+|+..++. .....++.||+|+|||.+....+...+.. +.++++++||..-+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~----g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKR----GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHc----CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 4678999999888765 23568899999999998765444443333 348999999999998888887763
No 190
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.85 E-value=9.4e-05 Score=60.14 Aligned_cols=72 Identities=18% Similarity=0.269 Sum_probs=51.7
Q ss_pred cChHHHHHHHHHHhcCC-ceEEEEccccccCCCCCC--CcEEEEcCCCCC------------------------------
Q 011605 369 QRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEG--VNNVVNYDKPAY------------------------------ 415 (481)
Q Consensus 369 ~~~~~r~~~~~~f~~g~-~~iLv~t~~l~~Gvdl~~--~~~Vi~~~~~~s------------------------------ 415 (481)
.+..+...+++.|++.. ..||+++..+.+|+|+|+ ++.||+.+.|..
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPD 110 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHH
Confidence 44446788999998654 379999988999999997 677888775521
Q ss_pred -hhHHHHHhhhcccCCCCccEEEEee
Q 011605 416 -IKTYIHRAGRTARAGQLGRCFTLLH 440 (481)
Q Consensus 416 -~~~~~Q~~GR~~R~~~~g~~~~~~~ 440 (481)
...+.|.+||+.|...+-.++++++
T Consensus 111 a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 111 AMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHhCccccCcCceEEEEEEe
Confidence 1234499999999876643444444
No 191
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.85 E-value=6.2e-05 Score=72.08 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=37.9
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
-++|.|.+|||||++++..+. .+ .....+.++++++++..|...+...+...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~-~l-~~~~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAK-EL-QNSEEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHH-Hh-hccccCCceEEEEecchHHHHHHHHHhhh
Confidence 368999999999998755333 33 11234558999999999998777777654
No 192
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.78 E-value=0.00011 Score=59.85 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCc---eEEEEccc--cccCCCCCC--CcEEEEcCCCCC------------------------------
Q 011605 373 VRSKTLKAFREGKI---QVLVSSDA--MTRGMDVEG--VNNVVNYDKPAY------------------------------ 415 (481)
Q Consensus 373 ~r~~~~~~f~~g~~---~iLv~t~~--l~~Gvdl~~--~~~Vi~~~~~~s------------------------------ 415 (481)
+..++++.|++... .||+++.. +++|+|+|+ ++.||+.+.|..
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 45788888986543 68888866 999999997 678888776621
Q ss_pred -hhHHHHHhhhcccCCCCccEEEEee
Q 011605 416 -IKTYIHRAGRTARAGQLGRCFTLLH 440 (481)
Q Consensus 416 -~~~~~Q~~GR~~R~~~~g~~~~~~~ 440 (481)
...+.|.+||+.|...+-.++++++
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEe
Confidence 1134499999999877744454444
No 193
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.76 E-value=3e-06 Score=84.96 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=63.2
Q ss_pred cccCCCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhc---CCc
Q 011605 312 LICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE---GKI 386 (481)
Q Consensus 312 ~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~ 386 (481)
.+.....|+..|...+++. .++++++|..-++..+-+..++...+ ....+.|.....+|++.++.|.. ..+
T Consensus 609 ~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~----~~~r~dG~~~~~~rq~ai~~~n~~~~~~~ 684 (696)
T KOG0383|consen 609 ALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG----KYERIDGPITGPERQAAIDRFNAPGSNQF 684 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC----cceeccCCccchhhhhhccccCCCCccce
Confidence 3344555666777777665 57899999999888888877776543 66778999999999999999983 346
Q ss_pred eEEEEccccccC
Q 011605 387 QVLVSSDAMTRG 398 (481)
Q Consensus 387 ~iLv~t~~l~~G 398 (481)
-+|.+|.+.+.|
T Consensus 685 cfllstra~g~g 696 (696)
T KOG0383|consen 685 CFLLSTRAGGLG 696 (696)
T ss_pred EEEeecccccCC
Confidence 678889887655
No 194
>PRK10536 hypothetical protein; Provisional
Probab=97.71 E-value=0.00011 Score=65.23 Aligned_cols=61 Identities=18% Similarity=0.149 Sum_probs=40.6
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHH
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (481)
.++.-.+..|...+..+.. ...+++.|++|+|||+.+...+++.+..+. -.++++.-|+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~--~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKD--VDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCC--eeEEEEeCCCCC
Confidence 3444556667666665433 557889999999999998877776665532 235666656654
No 195
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.57 E-value=0.00085 Score=68.92 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
+.|++.+.. +..++.-|++|+..++. .....++.|=+|+|||.+.... +..+..- +.++|+.+-|..-+
T Consensus 658 ~~p~~~~~~----~~~LN~dQr~A~~k~L~---aedy~LI~GMPGTGKTTtI~~L-IkiL~~~---gkkVLLtsyThsAV 726 (1100)
T KOG1805|consen 658 LIPKIKKII----LLRLNNDQRQALLKALA---AEDYALILGMPGTGKTTTISLL-IKILVAL---GKKVLLTSYTHSAV 726 (1100)
T ss_pred cCchhhHHH----HhhcCHHHHHHHHHHHh---ccchheeecCCCCCchhhHHHH-HHHHHHc---CCeEEEEehhhHHH
Confidence 666666642 23688999999988886 3556899999999999876543 3333332 33788888887766
Q ss_pred HHHHHHHHHhccccCceEEEeccCcchHHHHHHHhh-ccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCc
Q 011605 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK-RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
..+.-.++.. ++.+.-+......-+...++.- .... ...- .........+.|+.+|=-.+.+.+.
T Consensus 727 DNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s----~ks~-~~l~~~~~~~~IVa~TClgi~~plf----- 792 (1100)
T KOG1805|consen 727 DNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETS----EKSY-ADLKKFLDQTSIVACTCLGINHPLF----- 792 (1100)
T ss_pred HHHHHHHhcc----CcceeecCCccccchHHHHHhcccccc----hhhH-HHHHHHhCCCcEEEEEccCCCchhh-----
Confidence 6555555544 6665444444444443333321 0000 0000 1112233456788888444433332
Q ss_pred ccCCccEEEEechhHhh
Q 011605 194 TLEHLCYLVVDETDRLL 210 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~l~ 210 (481)
..+.|++.|+|||-.+.
T Consensus 793 ~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 793 VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred hccccCEEEEccccccc
Confidence 34569999999999754
No 196
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.44 E-value=0.00033 Score=66.23 Aligned_cols=71 Identities=25% Similarity=0.220 Sum_probs=53.4
Q ss_pred cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011605 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 127 (481)
+++-|.+++.. ..++++|.|+.|||||.+.+.-++..+........++++++.|+..+.++...+...+..
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 35678777654 267899999999999998766566666555455668999999999999999888886543
No 197
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.40 E-value=0.00091 Score=68.06 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=48.2
Q ss_pred chhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHH-hccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 52 ~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
.++|+.|+...+. ++-.++.|++|+|||.+... ++..+.. ......++++++||-.-+..+.+.+....
T Consensus 154 ~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 154 VDWQKVAAAVALT----RRISVISGGPGTGKTTTVAK-LLAALIQLADGERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 4799999877664 56689999999999987533 3333333 22233578889999888887777665543
No 198
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.35 E-value=0.0013 Score=66.75 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=46.3
Q ss_pred hhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHh-cc-CCccEEEEcccHHHHHHHHHHHHHh
Q 011605 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AV-RCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 53 ~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~-~~-~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.+|..|+..++. ++-.++.|++|+|||.+... ++..+... +. ...++++.+||-.-+..+.+.+...
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVAR-LLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHH-HHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 688888777765 66789999999999987433 33333321 11 1257999999987777666665544
No 199
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.21 E-value=0.001 Score=69.25 Aligned_cols=70 Identities=20% Similarity=0.107 Sum_probs=53.9
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
.+++-|.+++.+ ....++|.|+.|||||.+...-+...+...+....++|+++-|+..+.++.+.+...+
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 477889887654 2567899999999999987665665554433445589999999999999888888764
No 200
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.21 E-value=0.0023 Score=66.98 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=46.0
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHH
Q 011605 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 45 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (481)
..++ .+++.|.+|+..+.. ++-+++.|++|+|||.+. ..++..+.... ....+++++||-.-+..
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTIT-RAIIELAEELG-GLLPVGLAAPTGRAAKR 383 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHH-HHHHHHHHHcC-CCceEEEEeCchHHHHH
Confidence 4565 799999999988754 567899999999999864 33444443321 11468888999776653
No 201
>PRK06526 transposase; Provisional
Probab=97.18 E-value=0.0018 Score=58.51 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=33.4
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHH
Q 011605 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~ 91 (481)
.++++..++..+++++.....+....| +. .+.++++.||+|+|||..+.....
T Consensus 68 ~~le~fd~~~~~~~~~~~~~~l~~~~f--------------i~---~~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 68 KSLEEFDFDHQRSLKRDTIAHLGTLDF--------------VT---GKENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred CChhhccCccCCCcchHHHHHHhcCch--------------hh---cCceEEEEeCCCCchHHHHHHHHH
Confidence 445555555555566665555554333 11 367899999999999987654333
No 202
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0034 Score=60.13 Aligned_cols=60 Identities=23% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc-cc-HHHHHHHHHHHHHhccccCceE
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-PT-RDLALQVKDVFAAIAPAVGLSV 132 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~-Pt-~~L~~q~~~~~~~~~~~~~~~~ 132 (481)
..+++.||||+|||.++.-.+..........+.++.+++ -+ +.-+. .+++.++..+++.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPV 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcce
Confidence 457899999999999875444332222112234555554 33 22222 23556655445543
No 203
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.17 E-value=0.0014 Score=68.99 Aligned_cols=71 Identities=21% Similarity=0.120 Sum_probs=54.6
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
..+++-|.+++.+ ....++|.|+.|||||.+...-+...+...+....++|+++-|+..+.++.+.+.++.
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 3688999887643 2467999999999999986555555444433455689999999999999999888874
No 204
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.08 E-value=0.0017 Score=68.45 Aligned_cols=70 Identities=17% Similarity=0.088 Sum_probs=54.3
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
.+++-|.+++.. ....++|.|+.|||||.+...-+...+........++|+++-|+..+.++.+.+.++.
T Consensus 9 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 588999888653 2467999999999999986555554444333455689999999999999999888875
No 205
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.041 Score=54.13 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=63.8
Q ss_pred EECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcc-ccCceEEEeccCcchHHHHHHHhhcc
Q 011605 74 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP-AVGLSVGLAVGQSSIADEISELIKRP 152 (481)
Q Consensus 74 ~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~ 152 (481)
..|+||+|||++....++....++ -...|+.|....+.+.....+..-.. ..-.+-....++..+.-+..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg---yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkv------ 72 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG---YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKV------ 72 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc---hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeee------
Confidence 468999999998777677766664 23688888887777654443321110 00000000011111000000
Q ss_pred ccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCc-----ccCCcc-EEEEechhHhhH
Q 011605 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-----TLEHLC-YLVVDETDRLLR 211 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~-----~~~~~~-~iVvDE~H~l~~ 211 (481)
.....-..+.+|+++|.+.|...+.+.+.- ++.+.. +.+-||+|++-.
T Consensus 73 -----------n~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 73 -----------NNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred -----------cccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 000012245689999999998877554322 244444 457799999744
No 206
>PRK08181 transposase; Validated
Probab=97.04 E-value=0.0033 Score=57.16 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=41.5
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHC-CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccC
Q 011605 22 SLFEDCPLDHLPCLDPRLKVALQNM-GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (481)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~ 100 (481)
.++++..+...+++++.....+... .| +. .+.++++.||+|+|||..+...+...+..
T Consensus 75 ~tle~fd~~~~~~~~~~~~~~L~~~~~~--------------~~---~~~nlll~Gp~GtGKTHLa~Aia~~a~~~---- 133 (269)
T PRK08181 75 KTLDSFDFEAVPMVSKAQVMAIAAGDSW--------------LA---KGANLLLFGPPGGGKSHLAAAIGLALIEN---- 133 (269)
T ss_pred CCHhhCCccCCCCCCHHHHHHHHHHHHH--------------Hh---cCceEEEEecCCCcHHHHHHHHHHHHHHc----
Confidence 4556655555555666666655532 11 11 36789999999999997654333222222
Q ss_pred CccEEEEcccHHHHHH
Q 011605 101 CLRALVVLPTRDLALQ 116 (481)
Q Consensus 101 ~~~~lil~Pt~~L~~q 116 (481)
+.+++++. ...|..+
T Consensus 134 g~~v~f~~-~~~L~~~ 148 (269)
T PRK08181 134 GWRVLFTR-TTDLVQK 148 (269)
T ss_pred CCceeeee-HHHHHHH
Confidence 33555554 4455544
No 207
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.04 E-value=0.00097 Score=56.82 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=25.9
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHH
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (481)
.+.++++.|++|+|||..+...+...+.. +..++++ +..+|...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~----g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK----GYSVLFI-TASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT----T--EEEE-EHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC----CcceeEe-ecCceecc
Confidence 46789999999999998765544333332 2346555 44455543
No 208
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.97 E-value=0.0039 Score=64.64 Aligned_cols=75 Identities=20% Similarity=0.105 Sum_probs=55.9
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
..-..+++-|.+++.. ...+++|.|+.|||||.+...-+...+..+.....++++++.|+..+..+.+.+...+
T Consensus 192 ~e~~~L~~~Q~~av~~------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 192 VESSPLNPSQARAVVN------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred ccCCCCCHHHHHHHhC------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 3335799999888643 1356899999999999987655555554443445689999999999999998887655
Q ss_pred c
Q 011605 126 P 126 (481)
Q Consensus 126 ~ 126 (481)
.
T Consensus 266 g 266 (684)
T PRK11054 266 G 266 (684)
T ss_pred C
Confidence 3
No 209
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.87 E-value=0.0024 Score=57.40 Aligned_cols=36 Identities=25% Similarity=0.099 Sum_probs=23.2
Q ss_pred hhHHhHHhhhCCCC--CCCCEEEECCCCchhHHHhHHH
Q 011605 54 VQVAVWQETIGPGL--FERDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 54 ~Q~~~~~~~~~~~~--~~~~~l~~~~tG~GKT~~~~~~ 89 (481)
.|..+.+.+.+... ...+.++.||+|+|||-+++..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalaf 77 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAF 77 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHH
Confidence 34444444333332 2467999999999999887554
No 210
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.78 E-value=0.014 Score=46.89 Aligned_cols=20 Identities=45% Similarity=0.567 Sum_probs=13.7
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 011605 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~ 88 (481)
++.+++.|++|+|||.....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHH
Confidence 45689999999999987544
No 211
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.75 E-value=0.0064 Score=63.79 Aligned_cols=70 Identities=21% Similarity=0.123 Sum_probs=53.6
Q ss_pred cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011605 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (481)
+++-|.+++.+ ...+++|.|+.|||||.+.+.-+...+...+....++++++.|+..+.++.+.+.+.+.
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67888777543 25679999999999999876666666544334456899999999999999998887653
No 212
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.73 E-value=0.017 Score=60.83 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=43.2
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHH
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (481)
.+++.|.+|+..++.. ++-+++.|++|+|||.+.- ++...+.. .+.+++.++||-.-+..+
T Consensus 352 ~Ls~~Q~~Av~~i~~s---~~~~il~G~aGTGKTtll~-~i~~~~~~---~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGS---GDIAVVVGRAGTGKSTMLK-AAREAWEA---AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhcC---CCEEEEEecCCCCHHHHHH-HHHHHHHh---CCCeEEEEeCcHHHHHHH
Confidence 6899999999887651 2447899999999997632 33333333 245799999996655433
No 213
>PRK04296 thymidine kinase; Provisional
Probab=96.73 E-value=0.0036 Score=54.08 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=23.2
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
=.++.+|+|+|||..++-.+.. +.. .+.+++++-|.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~-~~~---~g~~v~i~k~~ 39 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYN-YEE---RGMKVLVFKPA 39 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHH-HHH---cCCeEEEEecc
Confidence 3578999999999765443333 222 24478877663
No 214
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.73 E-value=0.015 Score=62.38 Aligned_cols=61 Identities=13% Similarity=-0.038 Sum_probs=44.2
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCC-CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHH
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~-~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (481)
.|+ .+++-|.+++..++. ++ -+++.++.|+|||.+ +-++...+.. .+.+++.++||-.-+.
T Consensus 343 ~g~-~Ls~eQr~Av~~il~----s~~v~vv~G~AGTGKTT~-l~~~~~~~e~---~G~~V~~~ApTGkAA~ 404 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTD----GRDLGVVVGYAGTGKSAM-LGVAREAWEA---AGYEVRGAALSGIAAE 404 (988)
T ss_pred cCC-CCCHHHHHHHHHHhc----CCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEecCcHHHHH
Confidence 455 799999999988775 44 378999999999986 3334443333 2457999999966554
No 215
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.0076 Score=54.53 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=32.2
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHH
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 122 (481)
++.++++.|++|+|||..+...+.+.+ .. + .-++.+++.+++.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~---g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KA---G-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc---C-CeEEEEEHHHHHHHHHHHHh
Confidence 578999999999999987654333333 32 2 34455566677665544443
No 216
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.59 E-value=0.0052 Score=59.11 Aligned_cols=60 Identities=27% Similarity=0.316 Sum_probs=39.8
Q ss_pred cchhhHHhHHhhhCCC--CCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 51 LFPVQVAVWQETIGPG--LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~--~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
+++-|.+++..+++.. ..+.++++.|+-|+|||+.+- .+...+.. .+..+++++||-.-|
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~---~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS---RGKKVLVTAPTGIAA 63 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc---ccceEEEecchHHHH
Confidence 5677888887775444 346679999999999998642 23333322 234688888884433
No 217
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.56 E-value=0.0098 Score=53.74 Aligned_cols=65 Identities=25% Similarity=0.362 Sum_probs=53.3
Q ss_pred HHHHHHhcCCceEEEEccccccCCCCCC--------CcEEEEcCCCCChhHHHHHhhhcccCCCC-ccEEEEee
Q 011605 376 KTLKAFREGKIQVLVSSDAMTRGMDVEG--------VNNVVNYDKPAYIKTYIHRAGRTARAGQL-GRCFTLLH 440 (481)
Q Consensus 376 ~~~~~f~~g~~~iLv~t~~l~~Gvdl~~--------~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~-g~~~~~~~ 440 (481)
...++|.+|+..|+|.+.+.+.|+.+.. -++-|...+|||....+|..||+.|.|+. +..|.++.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~ 125 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLV 125 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEee
Confidence 5567899999999999999999998863 23566788999999999999999999986 54455443
No 218
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.45 E-value=0.0091 Score=55.14 Aligned_cols=67 Identities=21% Similarity=0.217 Sum_probs=45.9
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCC-EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHH
Q 011605 45 NMGISSLFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 45 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~-~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (481)
-+|+.-.+..|.-|+..++. ..-+ +.+.++.|||||+.++.+.+......+ .-.++++.=|+..+.+
T Consensus 223 vwGi~prn~eQ~~ALdlLld---~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLD---DDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-RYRKIIVTRPTVPVGE 290 (436)
T ss_pred hhccCcccHHHHHHHHHhcC---CCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-hhceEEEecCCcCccc
Confidence 47886666667666666554 1222 678999999999999888777776643 3336777767766553
No 219
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.43 E-value=0.02 Score=49.55 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=32.5
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc-ccHHHHHHHHHHHHHhccccCceEEE
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-PTRDLALQVKDVFAAIAPAVGLSVGL 134 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~-Pt~~L~~q~~~~~~~~~~~~~~~~~~ 134 (481)
+++.||||+|||.+..-.+.....+ +.++.+++ -+...+ -.++++.+++.+++.+..
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~----~~~v~lis~D~~R~g--a~eQL~~~a~~l~vp~~~ 61 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK----GKKVALISADTYRIG--AVEQLKTYAEILGVPFYV 61 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT----T--EEEEEESTSSTH--HHHHHHHHHHHHTEEEEE
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc----cccceeecCCCCCcc--HHHHHHHHHHHhccccch
Confidence 5789999999999876544333222 33455554 222222 244566666656766544
No 220
>PRK06921 hypothetical protein; Provisional
Probab=96.42 E-value=0.065 Score=48.93 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (481)
+.++++.|++|+|||..+.. +...+... .+..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~a-ia~~l~~~--~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTA-AANELMRK--KGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHhhh--cCceEEEEEH
Confidence 56799999999999976533 34433332 1335666553
No 221
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.41 E-value=0.0097 Score=63.23 Aligned_cols=99 Identities=16% Similarity=0.081 Sum_probs=66.2
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHH--------------hccCCccEEEEcccHHHHHHHHHHHHHhccccCce
Q 011605 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSN--------------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131 (481)
Q Consensus 66 ~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~--------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 131 (481)
+..|+.+++...+|.|||..-+...+...-. +...-..+|||+|. ++..||..++..-+... +.
T Consensus 371 ~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lK 448 (1394)
T KOG0298|consen 371 KKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LK 448 (1394)
T ss_pred ccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ce
Confidence 3346778999999999998754433322211 01123469999998 77789999999988763 78
Q ss_pred EEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHH
Q 011605 132 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (481)
Q Consensus 132 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l 187 (481)
+..+.|-......... ..-.+||++|||+.|..-+
T Consensus 449 v~~Y~Girk~~~~~~~---------------------el~~yDIVlTtYdiLr~El 483 (1394)
T KOG0298|consen 449 VLLYFGIRKTFWLSPF---------------------ELLQYDIVLTTYDILRNEL 483 (1394)
T ss_pred EEEEechhhhcccCch---------------------hhhccCEEEeehHHHHhHh
Confidence 8888876543222111 1135699999999996655
No 222
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.37 E-value=0.022 Score=46.59 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+..+++.||+|+|||..+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999997543
No 223
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.30 E-value=0.016 Score=61.40 Aligned_cols=72 Identities=24% Similarity=0.224 Sum_probs=54.9
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (481)
..+++-|.+++.+ ...+++|.|+.|||||.+...-+...+...+....++|+++-|+.-+..+.+.+.+++.
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3588999887653 25679999999999999876655555544334445899999999999999888887753
No 224
>PRK12377 putative replication protein; Provisional
Probab=96.28 E-value=0.045 Score=49.22 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=26.0
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHH
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (481)
.++++.|++|+|||..+.. +...+... +..++++ +...+..++
T Consensus 102 ~~l~l~G~~GtGKThLa~A-Ia~~l~~~---g~~v~~i-~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAA-IGNRLLAK---GRSVIVV-TVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHc---CCCeEEE-EHHHHHHHH
Confidence 5789999999999986543 33333332 2345444 444555543
No 225
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.27 E-value=0.023 Score=53.78 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=39.8
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEE
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGL 134 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 134 (481)
++.+.+.||||.|||.+..-.+.......+ ...-.||-+-|-.++. .++++.+++-+++.+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEV 265 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhH--HHHHHHHHHHhCCceEE
Confidence 456889999999999986654444442222 2224555566666654 55677777666665443
No 226
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.022 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=18.7
Q ss_pred CCCEEEECCCCchhHHHhHHHHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQ 92 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~ 92 (481)
+..+++.||||+|||.+....+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 556889999999999986554443
No 227
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.04 E-value=0.047 Score=47.01 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=32.0
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
+++.|++|+|||..++-.+...+.. +.+++|++.. ....++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~----g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR----GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC----CCcEEEEECC-CCHHHHHHHHHHc
Confidence 5889999999998766545544433 3468888644 4455566666555
No 228
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.02 E-value=0.082 Score=46.80 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=23.8
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
.+++.|++|+|||-. +.++...+... .++.+++++...
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~-~~~~~v~y~~~~ 73 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ-HPGKRVVYLSAE 73 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH-CTTS-EEEEEHH
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc-cccccceeecHH
Confidence 489999999999984 33344444432 245567776543
No 229
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.01 E-value=0.076 Score=57.57 Aligned_cols=74 Identities=15% Similarity=0.018 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
.++.........++ .+++-|.+++..+.. .++-.++.|+.|+|||.+. -++...+.. .+.+++.++||-.-+
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~l-~~~~~~~e~---~G~~V~g~ApTgkAA 438 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTMM-KAAREAWEA---AGYRVVGGALAGKAA 438 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHHH-HHHHHHHHH---cCCeEEEEcCcHHHH
Confidence 44444444333344 799999999887642 2344789999999999763 334443333 345799999996655
Q ss_pred HH
Q 011605 115 LQ 116 (481)
Q Consensus 115 ~q 116 (481)
..
T Consensus 439 ~~ 440 (1102)
T PRK13826 439 EG 440 (1102)
T ss_pred HH
Confidence 43
No 230
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.99 E-value=0.027 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=16.8
Q ss_pred CCEEEECCCCchhHHHhHHHHH
Q 011605 70 RDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~ 91 (481)
..+++.||||+|||.+....+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999988654333
No 231
>PRK14974 cell division protein FtsY; Provisional
Probab=95.91 E-value=0.084 Score=49.72 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=21.8
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (481)
+++.|++|+|||.+....+ ..+... +.+++++..
T Consensus 143 i~~~G~~GvGKTTtiakLA-~~l~~~---g~~V~li~~ 176 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLA-YYLKKN---GFSVVIAAG 176 (336)
T ss_pred EEEEcCCCCCHHHHHHHHH-HHHHHc---CCeEEEecC
Confidence 6789999999998765433 333332 335666653
No 232
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.90 E-value=0.07 Score=59.81 Aligned_cols=69 Identities=22% Similarity=0.179 Sum_probs=53.2
Q ss_pred cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011605 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (481)
+++-|.+++.. .+++++|.|+.|||||.+..--++..+..+ ..-.+++++|=|++-+.++...+.+.+.
T Consensus 2 ~t~~Q~~ai~~------~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 2 WTDEQWQAIYT------RGQNILVSASAGSGKTAVLVERIIKKILRG-VDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-CCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 56788887652 478999999999999998766566655544 2234699999999999998888877653
No 233
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.86 E-value=0.02 Score=57.28 Aligned_cols=75 Identities=21% Similarity=0.105 Sum_probs=52.7
Q ss_pred hhhHHhHHhhhCC-----CCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011605 53 PVQVAVWQETIGP-----GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 53 ~~Q~~~~~~~~~~-----~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 127 (481)
|||.-.+..++.- ...-+.+++.-|=|-|||......++..+.-.+..+..++++++++..+...+..+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 5676665555521 01123478888999999987665555555444455678999999999999999988888654
No 234
>PRK08116 hypothetical protein; Validated
Probab=95.84 E-value=0.086 Score=48.23 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=25.0
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHH
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (481)
..+++.|++|+|||..+.. +...+... +..++++ +...+..
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l~~~---~~~v~~~-~~~~ll~ 155 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANELIEK---GVPVIFV-NFPQLLN 155 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHHc---CCeEEEE-EHHHHHH
Confidence 3499999999999987543 44444432 2345544 3444444
No 235
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.66 E-value=0.052 Score=48.66 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=22.3
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEE
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil 107 (481)
..+++.+++|+|||..+.. +...+... +..++++
T Consensus 100 ~~~~l~G~~GtGKThLa~a-ia~~l~~~---g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA-ICNELLLR---GKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHhc---CCeEEEE
Confidence 4689999999999986543 33333332 3356655
No 236
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.53 E-value=0.023 Score=53.50 Aligned_cols=39 Identities=26% Similarity=0.525 Sum_probs=30.1
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHH
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~ 88 (481)
.++|||...|+.++....-....++.||.|.|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 358999999999987532234478999999999987654
No 237
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.52 E-value=0.38 Score=48.84 Aligned_cols=44 Identities=20% Similarity=0.138 Sum_probs=25.1
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHH
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (481)
.+++.|++|+|||.... ++...+... ..+.+++++.. ..+..++
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~~-~~g~~V~Yita-eef~~el 359 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARRL-YPGTRVRYVSS-EEFTNEF 359 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHHh-CCCCeEEEeeH-HHHHHHH
Confidence 48999999999997533 233333221 23445666553 4444443
No 238
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.50 E-value=0.085 Score=55.33 Aligned_cols=81 Identities=12% Similarity=0.228 Sum_probs=68.3
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-cccCCCCCCCcEEE
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l~~Gvdl~~~~~Vi 408 (481)
.+.++++.+++...+.+.++.++++. ..+..+..++|+++..+|.+.++...+|+.+|+|+|.. +...+.+.++..||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 45689999999999999999887753 33578999999999999999999999999999999964 55567888888887
Q ss_pred EcC
Q 011605 409 NYD 411 (481)
Q Consensus 409 ~~~ 411 (481)
.-.
T Consensus 389 IDE 391 (681)
T PRK10917 389 IDE 391 (681)
T ss_pred Eec
Confidence 643
No 239
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.49 E-value=0.24 Score=41.27 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=23.6
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
+++.|++|+|||..+...+... .. .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~-~~---~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI-AT---KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH-Hh---cCCEEEEEECCcch
Confidence 5789999999998754433322 22 23467777654443
No 240
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.46 E-value=0.068 Score=48.83 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.8
Q ss_pred CCCEEEECCCCchhHHH
Q 011605 69 ERDLCINSPTGSGKTLS 85 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~ 85 (481)
-.+++++|+||.|||..
T Consensus 61 mp~lLivG~snnGKT~I 77 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMI 77 (302)
T ss_pred CCceEEecCCCCcHHHH
Confidence 36799999999999974
No 241
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.32 E-value=0.042 Score=46.42 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=27.8
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHH
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (481)
-++.+|+++|||.. ++..+.+....+.++++..|...
T Consensus 7 ~~i~gpM~SGKT~e----Ll~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 7 EFIYGPMFSGKTEE----LLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEccCcCcchHH----HHHHHHHHHHcCCeEEEEecccc
Confidence 47899999999985 44555555556678999998754
No 242
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.32 E-value=0.039 Score=44.67 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=25.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
+..+++.+|+|+|||..... ++..+... ...++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~---~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP---GGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC---CCCEEEECCEEccc
Confidence 46789999999999986533 22221111 12477777665443
No 243
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.20 E-value=0.061 Score=48.05 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=58.3
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCc-chHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEe
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS-SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~ 178 (481)
..|.+|||+.+---+.++.+.++.+-.. +..++.+...- ...++...+. .....|.||
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~--------------------~~~~~i~vG 183 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLK--------------------KTRVHIAVG 183 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHH--------------------hCCceEEEe
Confidence 4577888888866666777777776311 23344444443 2333322221 134689999
Q ss_pred CchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 179 TPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
||+++..+++. ..+.++++.+||+|--|.
T Consensus 184 TP~Rl~kLle~-~~L~l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 184 TPGRLSKLLEN-GALSLSNLKRIVLDWSYL 212 (252)
T ss_pred ChHHHHHHHHc-CCCCcccCeEEEEcCCcc
Confidence 99999999976 457889999999998773
No 244
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.068 Score=52.94 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=16.0
Q ss_pred CCEEEECCCCchhHHHhHH
Q 011605 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~ 88 (481)
+..++.||.|+|||.++..
T Consensus 36 ha~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 36 QSILLVGASGVGKTTCARI 54 (491)
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 4689999999999987654
No 245
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.19 E-value=0.19 Score=49.71 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=28.7
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHH
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (481)
+.+++.|++|+|||... -++...+... ..+.+++++.. ..+..++...+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~-~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN-FSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh-CCCCeEEEEEH-HHHHHHHHHHH
Confidence 45889999999999654 3344433332 23456776655 34444444333
No 246
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.16 E-value=0.089 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=17.5
Q ss_pred CCCEEEECCCCchhHHHhHHHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~ 91 (481)
++.+++.+|||+|||.+....+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44578999999999987654333
No 247
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.21 Score=47.66 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=22.4
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
+.+.+.||||+|||.+....+.. +.. .+.++.++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~---~GkkVglI~ 276 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG---KKKTVGFIT 276 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH---cCCcEEEEe
Confidence 45789999999999886554433 322 233555554
No 248
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.13 E-value=0.2 Score=51.93 Aligned_cols=94 Identities=17% Similarity=0.100 Sum_probs=74.5
Q ss_pred CCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc
Q 011605 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (481)
Q Consensus 316 ~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~ 393 (481)
.+.|.+....++... .+.++||.++.+..+.++.+.|++..+ +..+..+|++++..+|.+......+|+.+|+|+|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~-~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG-AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 446776666666543 467899999999999999999987542 24588899999999999999999999999999998
Q ss_pred ccccCCCCCCCcEEEEcC
Q 011605 394 AMTRGMDVEGVNNVVNYD 411 (481)
Q Consensus 394 ~l~~Gvdl~~~~~Vi~~~ 411 (481)
... -.-++++..||..+
T Consensus 249 SAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 249 SAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eeE-EeccCCCCEEEEEc
Confidence 643 34566777777654
No 249
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.12 E-value=0.2 Score=57.19 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=44.6
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHH-hccCCccEEEEcccHHHHHHH
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~-~~~~~~~~lil~Pt~~L~~q~ 117 (481)
.+++.|.+|+..++..- ++-+++.+..|+|||.+. -.++..+.. ....+.+++.++||-.-+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~--dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILEST--DRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCC--CcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 78999999999888521 245889999999999863 233333322 112345788899997766543
No 250
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.10 E-value=0.3 Score=49.74 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=49.5
Q ss_pred chhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011605 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 52 ~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 127 (481)
.|.=.+-++++++.+ ..+-.++.+|=|.|||.+..+.+...+.. .+.++++.+|...-+.+.++.++..+..
T Consensus 171 ~~~~~~~id~~~~~f-kq~~tV~taPRqrGKS~iVgi~l~~La~f---~Gi~IlvTAH~~~ts~evF~rv~~~le~ 242 (752)
T PHA03333 171 SPRTLREIDRIFDEY-GKCYTAATVPRRCGKTTIMAIILAAMISF---LEIDIVVQAQRKTMCLTLYNRVETVVHA 242 (752)
T ss_pred ChhhHHHHHHHHHHH-hhcceEEEeccCCCcHHHHHHHHHHHHHh---cCCeEEEECCChhhHHHHHHHHHHHHHH
Confidence 333334455555544 24557888999999998765444433322 2468999999999999988888877763
No 251
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=95.05 E-value=0.013 Score=49.92 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=32.1
Q ss_pred hhhHHHhhcCCCcEEEeCchHHHHHHhcCCCc-ccCCccEEEEechhHhhH
Q 011605 162 PEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLR 211 (481)
Q Consensus 162 ~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~-~~~~~~~iVvDE~H~l~~ 211 (481)
|....+.....++|+|+++..++......... ...+-.+|||||||++.+
T Consensus 109 PY~~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 109 PYYLARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHHHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred hhHHHHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 44455666677899999999887654331111 122446899999998754
No 252
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.059 Score=54.78 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.4
Q ss_pred CCEEEECCCCchhHHHhHH
Q 011605 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~ 88 (481)
...++.||.|+|||.++..
T Consensus 38 HAyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARI 56 (702)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3469999999999987644
No 253
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.03 E-value=0.13 Score=50.81 Aligned_cols=62 Identities=16% Similarity=0.050 Sum_probs=37.7
Q ss_pred hHHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 58 ~~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
-++.++. .+..+.-+++.+++|+|||...+..+.... . .+.+++|+.-. +...|+.....++
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~---~g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA-A---AGGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH-h---cCCeEEEEEcc-ccHHHHHHHHHHc
Confidence 3456665 334455688999999999987654433322 2 23478888744 3445555555544
No 254
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.99 E-value=0.14 Score=53.31 Aligned_cols=81 Identities=14% Similarity=0.228 Sum_probs=67.7
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-cccCCCCCCCcEEE
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l~~Gvdl~~~~~Vi 408 (481)
.+.++++.+++...+.++++.++++. ..+..+..++|+++..+|...++...+|+.+|+|+|.. +...+++.++..||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 35689999999999999998887653 33588999999999999999999999999999999964 44567788888877
Q ss_pred EcC
Q 011605 409 NYD 411 (481)
Q Consensus 409 ~~~ 411 (481)
.-.
T Consensus 363 IDE 365 (630)
T TIGR00643 363 IDE 365 (630)
T ss_pred Eec
Confidence 644
No 255
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.97 E-value=0.083 Score=51.88 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.2
Q ss_pred CEEEECCCCchhHHHhHH
Q 011605 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~ 88 (481)
..++.||.|+|||.++..
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999987654
No 256
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.97 E-value=0.35 Score=50.04 Aligned_cols=84 Identities=12% Similarity=0.195 Sum_probs=51.5
Q ss_pred HHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHH
Q 011605 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 44 ~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
..+.-+....-|.+.+..++..- ..-+++.|.=|-|||.+.=+++....... ...+++|.+|+.+-++..+..+.+
T Consensus 208 ~~l~~T~dQ~~~l~~~~~l~~~~--~~~~vlTAdRGRGKSA~lGi~~~~~~~~~--~~~~iiVTAP~~~nv~~Lf~fa~~ 283 (758)
T COG1444 208 YELCLTEDQAEALEILERLLDAP--KRALVLTADRGRGKSAALGIALAAAARLA--GSVRIIVTAPTPANVQTLFEFAGK 283 (758)
T ss_pred hhhhcChhHHHHHHHHHHHHcCC--CceEEEEcCCCCcHhHHHhHHHHHHHHhc--CCceEEEeCCCHHHHHHHHHHHHH
Confidence 33333344444444555544411 22578899999999976544442211221 145799999999999888887777
Q ss_pred hccccCce
Q 011605 124 IAPAVGLS 131 (481)
Q Consensus 124 ~~~~~~~~ 131 (481)
-+..+|.+
T Consensus 284 ~l~~lg~~ 291 (758)
T COG1444 284 GLEFLGYK 291 (758)
T ss_pred hHHHhCCc
Confidence 66666544
No 257
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.92 E-value=0.19 Score=50.53 Aligned_cols=78 Identities=8% Similarity=0.114 Sum_probs=63.3
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEc
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~ 410 (481)
.+.++||.++++..+.++++.|++.. +..+..+||+++..+|.+......+|+.+|+|+|...-. ..+.++..||.-
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f--~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVD 100 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRF--GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVD 100 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh--CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEE
Confidence 36689999999999999999998643 256788999999999999888888999999999975332 456678887764
Q ss_pred C
Q 011605 411 D 411 (481)
Q Consensus 411 ~ 411 (481)
+
T Consensus 101 E 101 (505)
T TIGR00595 101 E 101 (505)
T ss_pred C
Confidence 4
No 258
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=94.92 E-value=0.069 Score=47.72 Aligned_cols=87 Identities=16% Similarity=0.317 Sum_probs=63.9
Q ss_pred eeEEEcccccChHHHHHHHHHHhcCC----ceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhh-cc-cCCCCc
Q 011605 360 IKIKEYSGLQRQSVRSKTLKAFREGK----IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR-TA-RAGQLG 433 (481)
Q Consensus 360 ~~~~~~~~~~~~~~r~~~~~~f~~g~----~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR-~~-R~~~~g 433 (481)
..+..++++.+... -.+.++. ..|+|+-+.+++|+.+.++....+...+...+.+.|| || .| |.|-.+
T Consensus 111 ~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR~gY~d 184 (239)
T PF10593_consen 111 IEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYRPGYED 184 (239)
T ss_pred ceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHH-hhcccCCccccc
Confidence 66777776654422 2233332 7889999999999999999999999999888888888 45 44 666678
Q ss_pred cEEEEeecchHHHHHHHHH
Q 011605 434 RCFTLLHKDEVKRFKKLLQ 452 (481)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~ 452 (481)
.|-++.+..-...+..+.+
T Consensus 185 l~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred ceEEecCHHHHHHHHHHHH
Confidence 9999998876555554443
No 259
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.91 E-value=0.2 Score=52.41 Aligned_cols=78 Identities=6% Similarity=0.118 Sum_probs=63.8
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~ 411 (481)
+.++||.++++..+.++.+.+++.. +..+..+||+++..+|.+......+|+.+|+|+|..... ..+.++..||.-+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 6689999999999999999998742 267889999999999998888889999999999975332 4566788777655
Q ss_pred C
Q 011605 412 K 412 (481)
Q Consensus 412 ~ 412 (481)
.
T Consensus 267 e 267 (679)
T PRK05580 267 E 267 (679)
T ss_pred C
Confidence 3
No 260
>PRK06893 DNA replication initiation factor; Validated
Probab=94.91 E-value=0.18 Score=44.99 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=14.6
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
..++++||+|+|||-...
T Consensus 40 ~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 447899999999997543
No 261
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.91 E-value=0.11 Score=53.58 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=14.8
Q ss_pred CEEEECCCCchhHHHhHH
Q 011605 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~ 88 (481)
-+|+.|+.|+|||.++..
T Consensus 40 AyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999987644
No 262
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.85 E-value=0.092 Score=49.11 Aligned_cols=41 Identities=27% Similarity=0.277 Sum_probs=32.0
Q ss_pred CCccchhhHHhHHhhhCCCCCCC---CEEEECCCCchhHHHhHH
Q 011605 48 ISSLFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~---~~l~~~~tG~GKT~~~~~ 88 (481)
++.++|||..+|+.+...+..++ ..++.||.|+||+..+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 35789999999999876544442 478999999999987654
No 263
>PRK09183 transposase/IS protein; Provisional
Probab=94.84 E-value=0.82 Score=41.63 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=40.8
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCC
Q 011605 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (481)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~ 101 (481)
.++++..+...++++......+....| +..+.++++.||+|+|||..+......... .+
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~-----------------i~~~~~v~l~Gp~GtGKThLa~al~~~a~~----~G 130 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSF-----------------IERNENIVLLGPSGVGKTHLAIALGYEAVR----AG 130 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCc-----------------hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH----cC
Confidence 445555555555566655555544322 123778999999999999765433222222 23
Q ss_pred ccEEEEcccHHHHHH
Q 011605 102 LRALVVLPTRDLALQ 116 (481)
Q Consensus 102 ~~~lil~Pt~~L~~q 116 (481)
.+++++. ...+..+
T Consensus 131 ~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 131 IKVRFTT-AADLLLQ 144 (259)
T ss_pred CeEEEEe-HHHHHHH
Confidence 3566654 3345433
No 264
>PRK05973 replicative DNA helicase; Provisional
Probab=94.80 E-value=0.092 Score=46.72 Aligned_cols=85 Identities=18% Similarity=0.106 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHCCCCccchhhHHh-----HHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAV-----WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~-----~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (481)
|+..+-++-.+-||.........+ ...+...+..|.-++|.|++|+|||..++-.+...+.+ +.+++|++-
T Consensus 25 ~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~----Ge~vlyfSl 100 (237)
T PRK05973 25 LHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS----GRTGVFFTL 100 (237)
T ss_pred HHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc----CCeEEEEEE
Confidence 556666666677886665555443 23334455556668999999999998766545444332 346888764
Q ss_pred cHHHHHHHHHHHHHh
Q 011605 110 TRDLALQVKDVFAAI 124 (481)
Q Consensus 110 t~~L~~q~~~~~~~~ 124 (481)
-.. ..|..+.+..+
T Consensus 101 Ees-~~~i~~R~~s~ 114 (237)
T PRK05973 101 EYT-EQDVRDRLRAL 114 (237)
T ss_pred eCC-HHHHHHHHHHc
Confidence 332 45556566555
No 265
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.80 E-value=0.064 Score=53.55 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=16.4
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 011605 70 RDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~ 89 (481)
...+++||.|+|||.++...
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999876543
No 266
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.78 E-value=0.091 Score=48.03 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 011605 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~ 88 (481)
..++++.||+|+|||..+-.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred cceEEEEcCCCCCHHHHHHH
Confidence 35689999999999987543
No 267
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.75 E-value=0.0071 Score=50.88 Aligned_cols=55 Identities=18% Similarity=0.281 Sum_probs=24.3
Q ss_pred EEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCc
Q 011605 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 130 (481)
Q Consensus 73 l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 130 (481)
++.|+=|.|||.+.-+++...+..+ ..+++|.+|+.+-++..++.+...++..+.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~---~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~ 55 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG---KIRILVTAPSPENVQTLFEFAEKGLKALGY 55 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS--------EEEE-SS--S-HHHHHCC---------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc---CceEEEecCCHHHHHHHHHHHHhhcccccc
Confidence 4788999999976433333222222 146999999998887777666555444333
No 268
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.74 E-value=0.18 Score=56.82 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=44.2
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHH-hccCCccEEEEcccHHHHHHH
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~-~~~~~~~~lil~Pt~~L~~q~ 117 (481)
.+++.|.+|+..++..- ++-+++.|..|+|||.+.- .++..+.. ....+.+++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~--dr~~~IqG~AGTGKTT~l~-~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETS--DRFTVVQGYAGVGKTTQFR-AVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCC--CceEEEEeCCCCCHHHHHH-HHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 78999999999888521 3458899999999998732 22222221 112345788899997766544
No 269
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.73 E-value=0.13 Score=53.98 Aligned_cols=74 Identities=14% Similarity=0.317 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccc----cceeEEEcccccChHHHHHHHHHHhcCCceEEEEcccc
Q 011605 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (481)
Q Consensus 321 ~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l 395 (481)
-.+..+.-...+.++++.+||...+.+.++.|+++.. ....+. +|+.++..++++.+++|.+|+++|||+|+.+
T Consensus 114 g~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 114 GLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 3445555555678999999999999999999987641 223333 9999999999999999999999999999763
No 270
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.64 E-value=0.2 Score=46.04 Aligned_cols=57 Identities=11% Similarity=0.003 Sum_probs=33.1
Q ss_pred hhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHH
Q 011605 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 62 ~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 122 (481)
++..+..+.-+++.|++|+|||..+...+...+.. .+.+++++.--. -..++...+.
T Consensus 23 ~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g~~vl~iS~E~-~~~~~~~r~~ 79 (271)
T cd01122 23 LTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ---HGVRVGTISLEE-PVVRTARRLL 79 (271)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cCceEEEEEccc-CHHHHHHHHH
Confidence 34344456778999999999998655444433322 134688876322 2333444443
No 271
>CHL00181 cbbX CbbX; Provisional
Probab=94.60 E-value=0.18 Score=46.62 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=16.5
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 011605 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~ 88 (481)
+.++++.||+|+|||.++-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 44589999999999987654
No 272
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.23 Score=47.62 Aligned_cols=27 Identities=30% Similarity=0.608 Sum_probs=19.8
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHh
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNR 97 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~ 97 (481)
.|+++.|+||+|||.+.-. +.+.+...
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHHhh
Confidence 4699999999999987644 44454443
No 273
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=94.46 E-value=0.047 Score=49.33 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=27.1
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhc---cCCccEEEEcccHHHHH
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLAL 115 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~---~~~~~~lil~Pt~~L~~ 115 (481)
.+|.||||+||+- +++.+...+ ...-.+++|+|++..+.
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~lI~P~PETVfFItP~~~mIp 131 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQLIQPPPETVFFITPQKDMIP 131 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCcccCCCCceEEECCCCCCCC
Confidence 5789999999996 444444432 12337999999887654
No 274
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.41 E-value=0.089 Score=47.57 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=19.4
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHh
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNR 97 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~ 97 (481)
++|.+|||||||.+. .++++.+-+.
T Consensus 128 ILVTGpTGSGKSTTl-AamId~iN~~ 152 (353)
T COG2805 128 ILVTGPTGSGKSTTL-AAMIDYINKH 152 (353)
T ss_pred EEEeCCCCCcHHHHH-HHHHHHHhcc
Confidence 789999999999873 5567666554
No 275
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.37 E-value=0.17 Score=47.26 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=23.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
++++++.|++|+|||..+.. +...+.. .+..+.++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~A-ia~~l~~---~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAA-IANELAK---KGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH---cCCCEEEEE
Confidence 46799999999999986543 3333332 233455553
No 276
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.33 E-value=0.2 Score=49.80 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=25.7
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHH
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (481)
+.+++.||+|+|||..... +...+... ..+.+++++.. ..+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~-~~~~~v~yi~~-~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEK-NPNAKVVYVTS-EKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEEEH-HHHHHH
Confidence 4589999999999976433 33333332 22445666643 344443
No 277
>PHA02533 17 large terminase protein; Provisional
Probab=94.29 E-value=0.19 Score=50.72 Aligned_cols=71 Identities=14% Similarity=0.025 Sum_probs=50.1
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (481)
.|+++|.+.+..+.. ++-.++..+=..|||......++...... .+..+++++|+...+...++.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~--~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFN--KDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 578899888776532 34456777888899988664444333332 345899999999999888887776543
No 278
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.25 E-value=0.34 Score=47.49 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=22.2
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
.+++++++|+|||.++...+. .+... +.+++++.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~-~L~~~---g~kV~lV~ 130 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLAR-YFKKK---GLKVGLVA 130 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHHHc---CCeEEEec
Confidence 377899999999998765443 33332 33566554
No 279
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.13 E-value=0.12 Score=49.93 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=18.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~ 95 (481)
..++++.||+|+|||.+.-. ++..+.
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~-~~~~l~ 65 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKY-VMKELE 65 (365)
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHHH
Confidence 35799999999999976533 444443
No 280
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.06 E-value=0.11 Score=52.17 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=14.9
Q ss_pred CEEEECCCCchhHHHhHH
Q 011605 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~ 88 (481)
..++.||.|+|||.++..
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRI 57 (509)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 468999999999987644
No 281
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.03 E-value=0.34 Score=56.67 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=45.4
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHH
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~ 120 (481)
.+.+-|.+++..++.. ..+-.++.++.|+|||.+. -.+...+.. .+.+++.++||-.-+..+.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s--~~~v~ii~G~aGTGKTt~l-~~l~~~~~~---~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTS--TKRFIIINGFGGTGSTEIA-QLLLHLASE---QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhC--CCCeEEEEECCCCCHHHHH-HHHHHHHHh---cCCeEEEEeCCHHHHHHHHHH
Confidence 6889999999887761 1234789999999999763 333333333 356899999998766555443
No 282
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.99 E-value=0.7 Score=47.02 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=42.8
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (481)
.+..++..|=-.|||.... +++..+... ..+.++++.+|.+..++..++++...+.
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s-~~Gi~IgytAH~~~ts~~vF~eI~~~le 309 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT-FRGIKIGYTAHIRKATEPVFEEIGARLR 309 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh-CCCCEEEEEcCcHHHHHHHHHHHHHHHh
Confidence 5667888888999998654 444444432 3467899999999999999999888765
No 283
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.97 E-value=0.23 Score=53.58 Aligned_cols=81 Identities=11% Similarity=0.255 Sum_probs=66.6
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhc-cccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc-ccccCCCCCCCcEEE
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~-~l~~Gvdl~~~~~Vi 408 (481)
.+.+++|.+|+...|.+.++.+++. ...+..+..++|..+..++..+++.+.+|+.+|+|+|. .+...+.+.++..+|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 3578999999999999999988764 23346788899999999999999999999999999996 455567888888877
Q ss_pred EcC
Q 011605 409 NYD 411 (481)
Q Consensus 409 ~~~ 411 (481)
.-.
T Consensus 579 IDE 581 (926)
T TIGR00580 579 IDE 581 (926)
T ss_pred eec
Confidence 633
No 284
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.91 E-value=0.28 Score=48.12 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=23.5
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
..+++.|++|+|||.... ++...+... ..+.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~-~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILEN-NPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHh-CCCCcEEEEE
Confidence 357899999999998653 333333332 2244677764
No 285
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.86 E-value=0.34 Score=48.21 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=38.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHH--hccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSN--RAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~--~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
++-++|.|..|||||.+++==+...++. +...+..++|+.|++....-..+-+-+++
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhc
Confidence 4558999999999998875434433333 23344469999999988775555454443
No 286
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.86 E-value=0.3 Score=46.93 Aligned_cols=62 Identities=18% Similarity=0.102 Sum_probs=35.9
Q ss_pred hHHhhhCC-CCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 58 VWQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 58 ~~~~~~~~-~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
-++.++.. +..+.-+++.+++|+|||...+..+.. +.. .+.+++|+.-.. ...|+.....++
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~-~a~---~g~~VlYvs~EE-s~~qi~~Ra~rl 132 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR-LAK---RGGKVLYVSGEE-SPEQIKLRADRL 132 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH-HHh---cCCeEEEEECCc-CHHHHHHHHHHc
Confidence 34555543 334555889999999999865543332 222 234788886543 344554444444
No 287
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.75 E-value=0.22 Score=51.84 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=30.6
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc-cHHHHHHHHHHHHHhccccCceEE
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP-TRDLALQVKDVFAAIAPAVGLSVG 133 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P-t~~L~~q~~~~~~~~~~~~~~~~~ 133 (481)
-+.+.||||+|||.+....+....... .+.++.+++- +...+ -.+.++.++...++.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~--G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~ 246 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVARE--GADQLALLTTDSFRIG--ALEQLRIYGRILGVPVH 246 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHc--CCCeEEEecCcccchH--HHHHHHHHHHhCCCCcc
Confidence 467999999999987654333221221 1124545442 32211 13345555554565543
No 288
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.71 E-value=0.17 Score=47.69 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=26.8
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (481)
+.++++.|+||+|||..+.. +...+... +..++++. ...+..+
T Consensus 183 ~~~Lll~G~~GtGKThLa~a-Ia~~l~~~---g~~V~y~t-~~~l~~~ 225 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNC-IAKELLDR---GKSVIYRT-ADELIEI 225 (329)
T ss_pred CCcEEEECCCCCcHHHHHHH-HHHHHHHC---CCeEEEEE-HHHHHHH
Confidence 47799999999999986543 33333332 33555544 4455543
No 289
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.69 E-value=0.62 Score=46.10 Aligned_cols=78 Identities=17% Similarity=0.050 Sum_probs=56.7
Q ss_pred ccchhhHHhHHhhhCCCCCC------CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHH
Q 011605 50 SLFPVQVAVWQETIGPGLFE------RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~------~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
.+-|||.-++..++.-...+ +.+++..|=+-|||..+...++..+.-....+..+.|++|+.+.+.+.+..++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 78899988888777433222 237899999999998765434444443335677899999999999888888877
Q ss_pred hccc
Q 011605 124 IAPA 127 (481)
Q Consensus 124 ~~~~ 127 (481)
....
T Consensus 141 mv~~ 144 (546)
T COG4626 141 MVKR 144 (546)
T ss_pred HHHh
Confidence 7654
No 290
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.69 E-value=0.63 Score=49.01 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=25.3
Q ss_pred chhhHHhHHhhhCCCCC--C-CCE-EEECCCCchhHHHhHHHHHHHH
Q 011605 52 FPVQVAVWQETIGPGLF--E-RDL-CINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 52 ~~~Q~~~~~~~~~~~~~--~-~~~-l~~~~tG~GKT~~~~~~~~~~l 94 (481)
|.-|.+.+...+..... + .++ +|.|+||+|||.+.-. ++..+
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~-VLrEL 805 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYS-VIQLL 805 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHH-HHHHH
Confidence 45555555555543332 2 234 5999999999987644 33444
No 291
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.67 E-value=0.12 Score=46.06 Aligned_cols=60 Identities=22% Similarity=0.173 Sum_probs=37.8
Q ss_pred HhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHH-hccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 60 QETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 60 ~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
+.++. .+..+..+++.+++|+|||..++-.+...+.+ + .++++++-. +-..++.+.+..+
T Consensus 9 D~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~g----e~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 9 DELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFG----EKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp HHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------EEEEESS-S-HHHHHHHHHTT
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcC----CcEEEEEec-CCHHHHHHHHHHc
Confidence 44452 23346779999999999998876656666555 3 268888743 3345556666655
No 292
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.60 E-value=0.21 Score=46.91 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=39.2
Q ss_pred HHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 43 ~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
+.+.|. +.+.|.+.+..++. .+.++++.|+||+|||.. +.+++..+... ....+++++-.+.++
T Consensus 127 l~~~g~--~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~-~~~~rivtIEd~~El 190 (319)
T PRK13894 127 YVERGI--MTAAQREAIIAAVR---AHRNILVIGGTGSGKTTL-VNAIINEMVIQ-DPTERVFIIEDTGEI 190 (319)
T ss_pred HHhcCC--CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHhhhhc-CCCceEEEEcCCCcc
Confidence 334454 45667777666554 478899999999999964 34444443221 123367766666554
No 293
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.59 E-value=0.2 Score=51.30 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=16.8
Q ss_pred CCEEEECCCCchhHHHhHHHH
Q 011605 70 RDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~ 90 (481)
+.+++.||.|+|||.++...+
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458999999999998765433
No 294
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.57 E-value=0.18 Score=47.19 Aligned_cols=54 Identities=19% Similarity=0.049 Sum_probs=35.3
Q ss_pred hHHhhhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHH
Q 011605 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 58 ~~~~~~~--~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (481)
.++.++. .+..|.-..+.+|+|+|||..++..+...... +.+++|+..-..+-.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~----g~~~vyId~E~~~~~ 97 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL----GGTVAFIDAEHALDP 97 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCCEEEECccccHHH
Confidence 4555555 33345557899999999998776555443332 447888887655544
No 295
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.56 E-value=0.12 Score=49.73 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.4
Q ss_pred EEEECCCCchhHHHhHH
Q 011605 72 LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~ 88 (481)
.++.||.|+|||..+..
T Consensus 41 ~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 41 WLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEecCCCCCHHHHHHH
Confidence 58999999999987644
No 296
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.52 E-value=0.22 Score=46.47 Aligned_cols=54 Identities=20% Similarity=0.077 Sum_probs=34.4
Q ss_pred hHHhhhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHH
Q 011605 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 58 ~~~~~~~--~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (481)
.++.++. .+..|.-..+.+|+|+|||..++-.+...... +.+++++..-..+-.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~----g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA----GGTAAFIDAEHALDP 97 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEEcccchhHH
Confidence 3455554 34445567899999999998876555444332 447888865544443
No 297
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.51 E-value=0.15 Score=45.76 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=39.6
Q ss_pred HHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 59 ~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
++.++. .+..+..+++.|++|+|||..++-.+...+.+ +.+++|++- .+-..+..+.+..+
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~----ge~~lyvs~-ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGIYVAL-EEHPVQVRRNMAQF 71 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc----CCcEEEEEe-eCCHHHHHHHHHHh
Confidence 345454 33456778999999999998766555554433 347888873 34555666666655
No 298
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.51 E-value=0.34 Score=47.41 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=41.7
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHH-HHHHHHHHHHHhccccCc
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD-LALQVKDVFAAIAPAVGL 130 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~-L~~q~~~~~~~~~~~~~~ 130 (481)
.++.++.|||||.+....++..+... ..+.+++++-++.. +..-+...+......+|+
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~-~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~ 62 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN-KKQQNILAARKVQNSIRDSVFKDIENLLSIEGI 62 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc-CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCC
Confidence 57899999999999887777666664 13457888888877 555666667666555454
No 299
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.48 E-value=0.53 Score=47.71 Aligned_cols=91 Identities=15% Similarity=0.307 Sum_probs=70.7
Q ss_pred HHHHHHHHhc-CCCeEEEEecchhhHHHHHHHHhhc-cccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-ccc
Q 011605 321 LYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTR 397 (481)
Q Consensus 321 ~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l~~ 397 (481)
..+...+... .+.++...++|.-.|++-++.+.++ .+.++.+.++.|.+..+.|.++++...+|+.+++|+|.+ +..
T Consensus 299 VA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd 378 (677)
T COG1200 299 VALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD 378 (677)
T ss_pred HHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc
Confidence 3444444433 4678999999977776666665543 234488999999999999999999999999999999976 557
Q ss_pred CCCCCCCcEEEEcC
Q 011605 398 GMDVEGVNNVVNYD 411 (481)
Q Consensus 398 Gvdl~~~~~Vi~~~ 411 (481)
.+++.++..||.-.
T Consensus 379 ~V~F~~LgLVIiDE 392 (677)
T COG1200 379 KVEFHNLGLVIIDE 392 (677)
T ss_pred ceeecceeEEEEec
Confidence 89999988888633
No 300
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.45 E-value=0.42 Score=49.66 Aligned_cols=92 Identities=10% Similarity=0.119 Sum_probs=73.6
Q ss_pred CCCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEc
Q 011605 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (481)
Q Consensus 315 ~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t 392 (481)
..+.|.+....++.+. .+..+||.++.+....++...++...+ .++..+|+++++.+|.....+...|+.+|+|+|
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg--~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt 303 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG--AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT 303 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC--CChhhhcccCChHHHHHHHHHHhcCCceEEEEe
Confidence 3456666666666543 467899999999999999988876542 789999999999999999999999999999999
Q ss_pred cccccCCCCCCCcEEEE
Q 011605 393 DAMTRGMDVEGVNNVVN 409 (481)
Q Consensus 393 ~~l~~Gvdl~~~~~Vi~ 409 (481)
...- -.-++++..||.
T Consensus 304 RSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 304 RSAL-FLPFKNLGLIIV 319 (730)
T ss_pred chhh-cCchhhccEEEE
Confidence 7633 345667777775
No 301
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.45 E-value=0.11 Score=48.69 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=29.8
Q ss_pred cchhhHHhHHhhhCCCCCC---CCEEEECCCCchhHHHhHHH
Q 011605 51 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~---~~~l~~~~tG~GKT~~~~~~ 89 (481)
++|||+..|+.+...+..+ ...++.||.|.||+..+...
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~ 44 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRAL 44 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHH
Confidence 4789999998887665544 34678999999999876543
No 302
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.43 E-value=0.17 Score=51.55 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=16.1
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 011605 70 RDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~ 89 (481)
...|+.+|.|+|||.++...
T Consensus 39 ha~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45788999999999876543
No 303
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.42 E-value=0.4 Score=47.67 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=17.6
Q ss_pred CCCCEEEECCCCchhHHHhHHHH
Q 011605 68 FERDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~ 90 (481)
.++.+.+.||+|+|||.+....+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35668899999999998764433
No 304
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.37 E-value=0.31 Score=48.47 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=15.0
Q ss_pred CEEEECCCCchhHHHhHH
Q 011605 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~ 88 (481)
.++++||+|+|||..+..
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999987644
No 305
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.33 E-value=0.21 Score=47.83 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=18.0
Q ss_pred CCCCCCCEEEECCCCchhHHHh
Q 011605 65 PGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 65 ~~~~~~~~l~~~~tG~GKT~~~ 86 (481)
.+-.|+.+++.+|+|+|||...
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred EeCCCCEEEEECCCCCChhHHH
Confidence 3445888999999999999753
No 306
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.29 E-value=0.26 Score=48.21 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
..++++.||+|+|||.+.-
T Consensus 55 ~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3569999999999998643
No 307
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.26 E-value=0.2 Score=51.47 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=14.9
Q ss_pred EEEECCCCchhHHHhHHH
Q 011605 72 LCINSPTGSGKTLSYALP 89 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~ 89 (481)
.++.|+.|+|||.++...
T Consensus 41 yLf~Gp~GvGKTTlAr~l 58 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLL 58 (647)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 589999999999876543
No 308
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.25 E-value=0.36 Score=43.26 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=37.3
Q ss_pred HHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 59 ~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
++.++. .+..+.-+++.+++|+|||..+...+...+.+ +.+++|+.-... ..++.+.+..+
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~----g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ----GKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC----CCEEEEEEcCCC-HHHHHHHHHHC
Confidence 345554 23345668899999999998765544443332 446777765433 34555566555
No 309
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.25 E-value=0.16 Score=52.13 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.7
Q ss_pred CCEEEECCCCchhHHHhHH
Q 011605 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~ 88 (481)
..+|+.||.|+|||..+..
T Consensus 39 Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4579999999999987644
No 310
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.20 E-value=0.13 Score=52.33 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=15.6
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 011605 70 RDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~ 89 (481)
+..+++||.|+|||.++-..
T Consensus 39 hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34688999999999876443
No 311
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.15 E-value=0.31 Score=49.71 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.0
Q ss_pred CEEEECCCCchhHHHhHH
Q 011605 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~ 88 (481)
-.|+.|+.|+|||.++..
T Consensus 40 A~LFtGP~GvGKTTLAri 57 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRI 57 (700)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999987654
No 312
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.14 E-value=0.17 Score=51.42 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=51.9
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHH-HHHHhcc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD-VFAAIAP 126 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~-~~~~~~~ 126 (481)
....|||.+.++.+-..- -+.+.+..++-+|||.+.+..+...+...+ ..++++.||...+.++.+ .+..+..
T Consensus 15 ~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P---~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQDP---GPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeCC---CCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 366789988877644311 246889999999999976655554444433 369999999999998774 5666544
No 313
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.10 E-value=1.2 Score=42.09 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=29.3
Q ss_pred cchhhHHhHHhhhCCCCCCC-CEEEECCCCchhHHHhHHH
Q 011605 51 LFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~-~~l~~~~tG~GKT~~~~~~ 89 (481)
++|||...|+.+.....+-. ..++.||.|.|||..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 36999999999886532223 4789999999999876543
No 314
>PLN03025 replication factor C subunit; Provisional
Probab=93.06 E-value=0.58 Score=44.20 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=15.7
Q ss_pred CCEEEECCCCchhHHHhHH
Q 011605 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~ 88 (481)
.++++.||+|+|||..+..
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999976543
No 315
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.04 E-value=0.21 Score=46.82 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=36.7
Q ss_pred cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
+.+.|.+.+..++. .+.+++++|+||||||... -+++..+... ....+++.+=.+.+|
T Consensus 129 ~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTll-~aL~~~i~~~-~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAID---SRLNIVISGGTGSGKTTLA-NAVIAEIVAS-APEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHH-HHHHHHHhcC-CCCceEEEecCCccc
Confidence 55677776666665 4678999999999999753 3444444322 123356665555554
No 316
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.03 E-value=0.39 Score=53.78 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=45.9
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (481)
..+++|.|+.|||||.+...-++..+..+ ....++++++-|+.-+.++...+...+.
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~-~~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNG-VPPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcC-CCCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 57899999999999998766666666554 3445899999999999999988877654
No 317
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.00 E-value=0.18 Score=46.72 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=45.7
Q ss_pred CHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHH
Q 011605 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 36 ~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (481)
++..+....-..|..+.+-|...+..++. ...|+++++.||||||... ..+.......-+++.+=-|.+|.-
T Consensus 143 ~k~~ltl~dli~~gt~~~~~a~~L~~av~---~r~NILisGGTGSGKTTlL-----Nal~~~i~~~eRvItiEDtaELql 214 (355)
T COG4962 143 PKIKLTLLDLIIFGTMIRRAAKFLRRAVG---IRCNILISGGTGSGKTTLL-----NALSGFIDSDERVITIEDTAELQL 214 (355)
T ss_pred ccccccHHHHHHcCCcCHHHHHHHHHHHh---hceeEEEeCCCCCCHHHHH-----HHHHhcCCCcccEEEEeehhhhcc
Confidence 33334443334566888888887777665 3469999999999999753 222221122337888877766654
No 318
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.97 E-value=0.23 Score=50.37 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=15.6
Q ss_pred CCEEEECCCCchhHHHhHH
Q 011605 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~ 88 (481)
+..++.||.|+|||..+..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4478999999999987654
No 319
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.96 E-value=0.11 Score=49.06 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=30.3
Q ss_pred ccchhhHHhHHhhhCCCCCC---CCEEEECCCCchhHHHhHH
Q 011605 50 SLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~---~~~l~~~~tG~GKT~~~~~ 88 (481)
.++|||...|+.+...+..+ ...++.||.|.||+..+..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~ 43 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH
Confidence 46799999999987665444 2477999999999987654
No 320
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.96 E-value=0.38 Score=53.20 Aligned_cols=79 Identities=11% Similarity=0.230 Sum_probs=64.3
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhc-cccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-cccCCCCCCCcEEE
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l~~Gvdl~~~~~Vi 408 (481)
.+.+++|.+++...+.++++.+++. ...+..+..+++..+..++..+++...+|..+|+|+|.. +...+++.++..+|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999999988763 333467788899999999999999999999999999964 44456777788777
Q ss_pred E
Q 011605 409 N 409 (481)
Q Consensus 409 ~ 409 (481)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 5
No 321
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.95 E-value=0.24 Score=49.68 Aligned_cols=63 Identities=19% Similarity=0.111 Sum_probs=42.0
Q ss_pred HhHHhhhCC-CCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 57 AVWQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 57 ~~~~~~~~~-~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
..++.++.. +..|.-+++.+|+|+|||..++-.+...+.+ +.+++|++ ..+-..|+.+.+.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~----ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN----KERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEE-eeCCHHHHHHHHHHc
Confidence 345666643 3446668999999999998765544443333 34688877 455567777777766
No 322
>PRK09354 recA recombinase A; Provisional
Probab=92.90 E-value=0.33 Score=45.80 Aligned_cols=54 Identities=20% Similarity=0.078 Sum_probs=35.2
Q ss_pred hHHhhhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHH
Q 011605 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 58 ~~~~~~~--~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (481)
.++.++. .+..|.-..+.+|+|+|||..++..+...... +.+++|+..-..+-.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~----G~~~~yId~E~s~~~ 102 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA----GGTAAFIDAEHALDP 102 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEECCccchHH
Confidence 3455555 23334557899999999999876655544333 447888876655543
No 323
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.90 E-value=0.31 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=17.4
Q ss_pred CCCEEEECCCCchhHHHhHHHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~ 91 (481)
++.+++.+|+|+|||.+..-.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44578999999999987654443
No 324
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.88 E-value=0.076 Score=59.07 Aligned_cols=95 Identities=23% Similarity=0.383 Sum_probs=76.1
Q ss_pred CeEEEEecchhhHHHHHHHHhhccccceeEEEcccccC-----------hHHHHHHHHHHhcCCceEEEEccccccCCCC
Q 011605 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-----------QSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~-----------~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl 401 (481)
-..++|++....+....+.+.+..-.. +..+.|.+. ...+.+++..|....+++|++|.++.+|+|+
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~ 370 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSND--PLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDV 370 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccC--cceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcch
Confidence 356999999999999988887754221 222333332 1236688899999999999999999999999
Q ss_pred CCCcEEEEcCCCCChhHHHHHhhhcccC
Q 011605 402 EGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (481)
Q Consensus 402 ~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~ 429 (481)
+.++.|+.++.|.....|.|..||+.+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 371 PKCNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhhhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999999654
No 325
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.84 E-value=0.3 Score=51.94 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.7
Q ss_pred CEEEECCCCchhHHHhHHH
Q 011605 71 DLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~ 89 (481)
..|+.+|.|+|||.++...
T Consensus 39 a~Lf~Gp~G~GKTt~A~~l 57 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARIL 57 (824)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3689999999999876543
No 326
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.84 E-value=0.45 Score=55.72 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=42.9
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhH---HHHHHHHHHhccCCccEEEEcccHHHHHHH
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA---LPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~---~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (481)
.+++.|.+|+..++.. .++-+++.++.|+|||.+.. -++...+. ..+.+++.++||-.-+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~~--~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~---~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIIST--KDRFVAVQGLAGVGKTTMLESRYKPVLQAFE---SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH---hcCCeEEEEeChHHHHHHH
Confidence 7899999999988751 12346889999999998642 11222222 2355799999997766544
No 327
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.83 E-value=0.33 Score=45.41 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=29.8
Q ss_pred ccchhhHHhHHhhhCCCCCC---CCEEEECCCCchhHHHhHH
Q 011605 50 SLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~---~~~l~~~~tG~GKT~~~~~ 88 (481)
.++|||...|+.+...+..+ ...++.||.|.||+..+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~ 44 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL 44 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 56799999998877654333 3478999999999976543
No 328
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.80 E-value=0.42 Score=44.52 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=35.8
Q ss_pred cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
+.+.|.+.+..++. .+.+++++|+||+|||... .+++..+... ....+++.+=.+.++
T Consensus 117 ~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTll-~al~~~i~~~-~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVL---ARKNILVVGGTGSGKTTLA-NALLAEIAKN-DPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHH-HHHHHHhhcc-CCCceEEEECCchhh
Confidence 44555555555554 3678999999999999753 3344444331 123367766665554
No 329
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.80 E-value=0.56 Score=46.34 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=23.3
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (481)
+.+++.||+|+|||.... ++...+... +.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~---~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES---GGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc---CCCEEEeeH
Confidence 458999999999997643 233333332 346777653
No 330
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.44 Score=44.36 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHH--CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccH
Q 011605 34 CLDPRLKVALQN--MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (481)
Q Consensus 34 ~l~~~l~~~~~~--~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (481)
||..+|...-.. +...+|- .+..+ .+..-+.+++.+|+|+|||+.+= .+.+. .+ -..|=+...
T Consensus 155 GL~~Qi~EirE~VELPL~~PE-----lF~~~--GI~PPKGVLLYGPPGTGKTLLAk-----AVA~~--T~-AtFIrvvgS 219 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPE-----LFEEL--GIDPPKGVLLYGPPGTGKTLLAK-----AVANQ--TD-ATFIRVVGS 219 (406)
T ss_pred CHHHHHHHHHHHhcccccCHH-----HHHHc--CCCCCCceEeeCCCCCcHHHHHH-----HHHhc--cC-ceEEEeccH
Confidence 777777766553 2322332 22221 12235789999999999997532 22221 11 255556666
Q ss_pred HHHHH
Q 011605 112 DLALQ 116 (481)
Q Consensus 112 ~L~~q 116 (481)
+|++.
T Consensus 220 ElVqK 224 (406)
T COG1222 220 ELVQK 224 (406)
T ss_pred HHHHH
Confidence 77753
No 331
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.78 E-value=0.46 Score=41.40 Aligned_cols=18 Identities=44% Similarity=0.678 Sum_probs=15.8
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
.++++.+|+|+|||.+.+
T Consensus 49 P~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CceEeeCCCCCchhhHHH
Confidence 679999999999998754
No 332
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.77 E-value=0.24 Score=48.37 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=28.0
Q ss_pred chhhHHhHHhhhCCCCCCCC-EEEECCCCchhHHHhHHHHHHHHHH
Q 011605 52 FPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLSN 96 (481)
Q Consensus 52 ~~~Q~~~~~~~~~~~~~~~~-~l~~~~tG~GKT~~~~~~~~~~l~~ 96 (481)
.+.|.+.+..++. +... +++.||||||||.+ +..++..+..
T Consensus 243 ~~~~~~~~~~~~~---~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLN---RPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHh---CCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 5777777777765 2334 67899999999986 3445554444
No 333
>PRK04195 replication factor C large subunit; Provisional
Probab=92.76 E-value=0.43 Score=47.98 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
.+.+++.||+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4568999999999997643
No 334
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.76 E-value=0.76 Score=44.25 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=23.5
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (481)
.+.+++.|++|+|||-.. .++.........+.+++++..
T Consensus 113 ~nplfi~G~~GlGKTHLl--~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLL--QAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred CCcEEEECCCCCCHHHHH--HHHHHHHHhhCCCceEEeccH
Confidence 345899999999999743 333333332234445666554
No 335
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.62 E-value=0.27 Score=49.61 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=14.9
Q ss_pred CEEEECCCCchhHHHhHH
Q 011605 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~ 88 (481)
..++.||.|+|||..+..
T Consensus 40 a~Lf~Gp~GvGKTTlAr~ 57 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRL 57 (546)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999987654
No 336
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.096 Score=47.68 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
..|+++.+|||||||+.+.
T Consensus 97 KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eccEEEECCCCCcHHHHHH
Confidence 5789999999999998654
No 337
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.35 E-value=1 Score=44.63 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=24.2
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (481)
+.+++.||+|+|||..... +...+... ..+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~a-i~~~l~~~-~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQS-IGNYVVQN-EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHH-HHHHHHHh-CCCCeEEEEEH
Confidence 4589999999999976432 33333332 23446777754
No 338
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.27 E-value=0.44 Score=43.41 Aligned_cols=38 Identities=21% Similarity=0.077 Sum_probs=26.9
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 67 ~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
..+.-.++.+++|+|||..++-.+...+.+ +.+++|++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~----Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASR----GNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhC----CCcEEEEE
Confidence 345668999999999998766544443332 34788887
No 339
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.11 E-value=0.34 Score=47.27 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=15.2
Q ss_pred CEEEECCCCchhHHHhHH
Q 011605 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~ 88 (481)
..++.||.|+|||.++..
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999987654
No 340
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.09 E-value=0.56 Score=48.11 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=14.9
Q ss_pred CEEEECCCCchhHHHhHH
Q 011605 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~ 88 (481)
..++.||.|+|||.++..
T Consensus 40 ayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358999999999987654
No 341
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.07 E-value=0.56 Score=47.07 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.6
Q ss_pred EEEECCCCchhHHHhHH
Q 011605 72 LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~ 88 (481)
.++.||.|+|||.++..
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 59999999999987654
No 342
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.04 E-value=0.29 Score=51.73 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.4
Q ss_pred EEEECCCCchhHHHhHH
Q 011605 72 LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~ 88 (481)
.|+.||.|+|||.++..
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 48999999999987644
No 343
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.93 E-value=0.37 Score=49.09 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.0
Q ss_pred EEEECCCCchhHHHhHHH
Q 011605 72 LCINSPTGSGKTLSYALP 89 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~ 89 (481)
.++.||.|+|||.++...
T Consensus 38 ~Lf~Gp~G~GKTt~A~~l 55 (584)
T PRK14952 38 YLFSGPRGCGKTSSARIL 55 (584)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 589999999999876543
No 344
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.82 E-value=0.83 Score=43.34 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.3
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
.++++.||+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 569999999999998653
No 345
>PRK04328 hypothetical protein; Provisional
Probab=91.63 E-value=0.38 Score=43.55 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=37.8
Q ss_pred HHhhhCC-CCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 59 WQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 59 ~~~~~~~-~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
++.++.. +..|..+++.+++|+|||..++-.+...+.+ +.+++|++ +.+-..+..+.++.+
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~----ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEE-eeCCHHHHHHHHHHc
Confidence 3444543 3346678999999999998766555554444 33677776 333444555555555
No 346
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.57 E-value=0.37 Score=49.59 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=15.3
Q ss_pred CCEEEECCCCchhHHHhHH
Q 011605 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~ 88 (481)
+..++.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARI 57 (585)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3368999999999987654
No 347
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=91.49 E-value=0.46 Score=49.96 Aligned_cols=71 Identities=20% Similarity=0.175 Sum_probs=56.1
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (481)
.+++-|.+++... ...++|.++.|+|||.+..--+...+.........++.++=|+.-+.++...+.++..
T Consensus 2 ~Ln~~Q~~av~~~------~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP------DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC------CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5778898886552 5679999999999999876656666666545555799999999999999999988875
No 348
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.48 E-value=0.43 Score=48.27 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=14.8
Q ss_pred CEEEECCCCchhHHHhHH
Q 011605 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~ 88 (481)
..++.||.|+|||..+..
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358999999999987644
No 349
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=1.8 Score=39.31 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=32.7
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.+++.+|+|+||++.+-. +... .+ .+.+-+.+..|+..|..+-.++
T Consensus 168 giLLyGPPGTGKSYLAKA-----VATE--An-STFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKA-----VATE--AN-STFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred eEEEeCCCCCcHHHHHHH-----HHhh--cC-CceEEeehHHHHHHHhccHHHH
Confidence 489999999999975422 2221 12 5888899999998877665555
No 350
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.46 E-value=0.11 Score=52.93 Aligned_cols=60 Identities=23% Similarity=0.389 Sum_probs=46.3
Q ss_pred HHHhcCCceEEEEccccccCCCCCCCcEEE--------EcCCCCChhHHHHHhhhcccCCCC-ccEEEE
Q 011605 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVV--------NYDKPAYIKTYIHRAGRTARAGQL-GRCFTL 438 (481)
Q Consensus 379 ~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi--------~~~~~~s~~~~~Q~~GR~~R~~~~-g~~~~~ 438 (481)
++|-+|+-.|-|-+.+.+.||.+..-+.|+ -..+|||.+.-+|.+||..|-++- +.-|+|
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvF 919 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVF 919 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEE
Confidence 456778777888888889999998654443 478999999999999999997764 444444
No 351
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.37 E-value=1.6 Score=43.25 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=17.0
Q ss_pred CCCEEEECCCCchhHHHhHHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~ 90 (481)
+.-+.+.||||+|||.+....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 3447799999999999866544
No 352
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.25 E-value=0.66 Score=43.91 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=28.1
Q ss_pred cchhhHHhHHhhhCCCCC-CCCEEEECCCCchhHHHhHH
Q 011605 51 LFPVQVAVWQETIGPGLF-ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~-~~~~l~~~~tG~GKT~~~~~ 88 (481)
++|||...|+.+.....+ ....++.||.|.||+..+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~ 40 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH 40 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH
Confidence 468999999987763211 23477999999999987654
No 353
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.24 E-value=0.48 Score=48.60 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.7
Q ss_pred EEEECCCCchhHHHhHH
Q 011605 72 LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~ 88 (481)
.+++||.|+|||.++..
T Consensus 41 ~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRI 57 (618)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999987654
No 354
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=91.21 E-value=2.1 Score=40.30 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=12.9
Q ss_pred CCEE-EECCCCchhHHHh
Q 011605 70 RDLC-INSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l-~~~~tG~GKT~~~ 86 (481)
.+++ +.||+|+|||..+
T Consensus 43 ~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred CeEEEeeCcCCCCHHHHH
Confidence 3444 4899999999754
No 355
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.18 E-value=0.55 Score=44.86 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=19.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSN 96 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~ 96 (481)
+.-++++||||||||.+. .+++..+..
T Consensus 134 ~glilI~GpTGSGKTTtL-~aLl~~i~~ 160 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLL-AAIIRELAE 160 (358)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHhh
Confidence 566899999999999864 445554443
No 356
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.01 E-value=0.53 Score=42.00 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=33.0
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.+.-+++.+++|+|||..++-.+...+.+ +.++++++.. .-..+..+.+.++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~----g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQN----GYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhC----CCcEEEEeCC-CCHHHHHHHHHHh
Confidence 46668999999999998754444433222 3478888743 3344555555544
No 357
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=90.98 E-value=2.2 Score=40.83 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
..+++.+.|+.|.|||..
T Consensus 61 ~~~GlYl~G~vG~GKT~L 78 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTML 78 (362)
T ss_pred CCceEEEECCCCCchhHH
Confidence 357799999999999973
No 358
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.95 E-value=0.53 Score=42.43 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=17.6
Q ss_pred CCCCCCCEEEECCCCchhHHH
Q 011605 65 PGLFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 65 ~~~~~~~~l~~~~tG~GKT~~ 85 (481)
.+..|+.+++.++.|+|||..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHH
Confidence 444688999999999999963
No 359
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.91 E-value=0.91 Score=42.57 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=14.6
Q ss_pred CCEEEECCCCchhHHHh
Q 011605 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~ 86 (481)
.++++.||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999754
No 360
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=90.89 E-value=0.72 Score=44.10 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=21.1
Q ss_pred CCCCCCCEEEECCCCchhHHHhHHHHHHHHHH
Q 011605 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (481)
Q Consensus 65 ~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~ 96 (481)
.+-.|+..++.+|.|+|||..+. .+...+..
T Consensus 165 PIGkGQR~lIvgppGvGKTTLaK-~Ian~I~~ 195 (416)
T PRK09376 165 PIGKGQRGLIVAPPKAGKTVLLQ-NIANSITT 195 (416)
T ss_pred ccccCceEEEeCCCCCChhHHHH-HHHHHHHh
Confidence 34468899999999999996432 24444433
No 361
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=90.81 E-value=1.4 Score=42.38 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=14.8
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
+..++.||.|+|||..+.
T Consensus 37 ~~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIAR 54 (355)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999997653
No 362
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=90.75 E-value=1.4 Score=40.50 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=22.0
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
-+.+.+++|+|||.++.-.+.. +.. .+.+++++.
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~-l~~---~g~~V~li~ 107 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANK-LKK---QGKSVLLAA 107 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHh---cCCEEEEEe
Confidence 3667899999999886654433 322 234666665
No 363
>PRK10867 signal recognition particle protein; Provisional
Probab=90.75 E-value=0.95 Score=44.35 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=31.0
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc--ccHHHHHHHHHHHHHhccccCceEEE
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGL 134 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~ 134 (481)
+++++++|+|||.++.-.+.. +... .+.+++++. +.+.-+. ++++.++...++.+..
T Consensus 103 I~~vG~~GsGKTTtaakLA~~-l~~~--~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~ 161 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKY-LKKK--KKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFP 161 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHH-HHHh--cCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEe
Confidence 678999999999987654443 3322 133566554 2333222 2333444444666544
No 364
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.73 E-value=3.5 Score=37.66 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=16.3
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 011605 70 RDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~ 89 (481)
..+++.+++|+|||..+...
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l 95 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKM 95 (270)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 56889999999999876543
No 365
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=90.62 E-value=0.49 Score=52.74 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=49.1
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHHh-ccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 127 (481)
.+++++|.|..|||||++...-++..+..+ +..-..+|++|-|++-+.++...+..-...
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 367899999999999999877778777775 245558999999999999999887766543
No 366
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.60 E-value=2.3 Score=42.75 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHh
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 149 (481)
..+++++|+|+|||+ +...+.+.... -.|-+-.=+|.+.+..+=.+.
T Consensus 546 sGvLL~GPPGCGKTL-----lAKAVANEag~---NFisVKGPELlNkYVGESErA------------------------- 592 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTL-----LAKAVANEAGA---NFISVKGPELLNKYVGESERA------------------------- 592 (802)
T ss_pred CceEEeCCCCccHHH-----HHHHHhhhccC---ceEeecCHHHHHHHhhhHHHH-------------------------
Q ss_pred hccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhH-------HHHhhhHHHHH
Q 011605 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-------EAYQAWLPTVL 222 (481)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~-------~~~~~~~~~l~ 222 (481)
+.....+ ..-+..++|+|||++.+.. +.-..-+.+++
T Consensus 593 ---------------------------------VR~vFqR---AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLL 636 (802)
T KOG0733|consen 593 ---------------------------------VRQVFQR---ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLL 636 (802)
T ss_pred ---------------------------------HHHHHHH---hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHH
Q ss_pred HhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCc
Q 011605 223 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (481)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~ 280 (481)
.-+.-.. .+..+.++.||..++.
T Consensus 637 tElDGl~-----------------------------------~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 637 TELDGLE-----------------------------------ERRGVYVIAATNRPDI 659 (802)
T ss_pred HHhcccc-----------------------------------cccceEEEeecCCCcc
No 367
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=90.54 E-value=2.1 Score=33.69 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=30.8
Q ss_pred EECCCCchhHHHhHHHHHHHHHHhccCCccEEEE-----cccHHHHHHHHHHHHHh
Q 011605 74 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-----LPTRDLALQVKDVFAAI 124 (481)
Q Consensus 74 ~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil-----~Pt~~L~~q~~~~~~~~ 124 (481)
+.|+||+|||++.-+ +.+.+........-+... .|....+.+...+++++
T Consensus 58 fHG~tGtGKn~v~~l-iA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~ 112 (127)
T PF06309_consen 58 FHGWTGTGKNFVSRL-IAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSW 112 (127)
T ss_pred eecCCCCcHHHHHHH-HHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHH
Confidence 699999999998866 444555543333333332 36666666555566555
No 368
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.45 E-value=0.35 Score=49.43 Aligned_cols=60 Identities=23% Similarity=0.246 Sum_probs=41.0
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEe
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 135 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 135 (481)
+++-...|.||-.+..--+.+...++ +.++|.+.-+..|--+-.+.+...... ++.+..+
T Consensus 292 fLiGDGAGVGKGRTvAgiIfeNyLkG---RKrAlW~SVSsDLKfDAERDL~DigA~-~I~V~al 351 (1300)
T KOG1513|consen 292 FLIGDGAGVGKGRTVAGIIFENYLKG---RKRALWFSVSSDLKFDAERDLRDIGAT-GIAVHAL 351 (1300)
T ss_pred eeeccCcccCCCceeEEEEehhhhcc---cceeEEEEeccccccchhhchhhcCCC-Cccceeh
Confidence 67777777777655433356666664 347999999989988888888877554 4555443
No 369
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=90.44 E-value=1.1 Score=38.48 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.6
Q ss_pred CCEEEECCCCchhHHHhHH
Q 011605 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~ 88 (481)
...++.||.|+|||..+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~ 33 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALA 33 (188)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999986544
No 370
>PRK10263 DNA translocase FtsK; Provisional
Probab=90.41 E-value=2.4 Score=46.77 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=29.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
..+++|.|.||+|||.+....++..+........++++|=|-
T Consensus 1010 ~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK 1051 (1355)
T PRK10263 1010 MPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPK 1051 (1355)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCC
Confidence 478999999999999876655555555543344456666555
No 371
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=90.39 E-value=2.1 Score=36.01 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=30.1
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHH
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
.++.+++|||||..+...+.. .+.+++|+.-....-..+.+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 478999999999865433322 234788887666666666666554
No 372
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=90.37 E-value=1.4 Score=36.91 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=16.6
Q ss_pred CCEEEECCCCchhHHHhHHHHH
Q 011605 70 RDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~ 91 (481)
...++.||.|+||+..+...+.
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~ 41 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFAR 41 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHH
Confidence 3479999999999987654333
No 373
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.30 E-value=0.55 Score=42.33 Aligned_cols=46 Identities=13% Similarity=-0.094 Sum_probs=30.8
Q ss_pred hhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc
Q 011605 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 61 ~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (481)
.++..+..|.-+++.|++|+|||..++-.+...+... +.++++++.
T Consensus 5 ~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~---g~~vly~s~ 50 (242)
T cd00984 5 NLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQ---GKPVLFFSL 50 (242)
T ss_pred hhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCceEEEeC
Confidence 3444455566789999999999987655444444331 347888873
No 374
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.28 E-value=0.87 Score=39.12 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=24.2
Q ss_pred cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 011605 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~ 86 (481)
+.+.|.+.+...+. .+..+++.+|||+|||...
T Consensus 10 ~~~~~~~~l~~~v~---~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 10 FSPLQAAYLWLAVE---ARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHHH
Confidence 45556666555554 4788999999999999753
No 375
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.28 E-value=1.1 Score=44.08 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.1
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
.++++.||+|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997643
No 376
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.28 E-value=0.57 Score=50.60 Aligned_cols=101 Identities=18% Similarity=0.085 Sum_probs=70.1
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEc
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~ 410 (481)
..+++|||+.-......+...+.-.+ +..... ++ .++....+..|++ -.-+++-+...+.|+|+-++.+|+..
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~---I~~~~~-~~--t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ 1292 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNL---IKKQLD-GE--TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLV 1292 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhh---hHhhhc-cC--Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhhee
Confidence 35688999876555555555554333 221111 22 2334556666655 22345667888999999999999999
Q ss_pred CCCCChhHHHHHhhhcccCCCCccEEEE
Q 011605 411 DKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (481)
Q Consensus 411 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 438 (481)
++--++..-.|.+||+.|.|++..+++.
T Consensus 1293 ePiLN~~~E~QAigRvhRiGQ~~pT~V~ 1320 (1394)
T KOG0298|consen 1293 EPILNPGDEAQAIGRVHRIGQKRPTFVH 1320 (1394)
T ss_pred ccccCchHHHhhhhhhhhcccccchhhh
Confidence 9999999999999999999998555544
No 377
>PF12846 AAA_10: AAA-like domain
Probab=90.25 E-value=0.4 Score=44.74 Aligned_cols=42 Identities=26% Similarity=0.256 Sum_probs=27.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
+.++++.|+||+|||......+...+.. +..++++=|.-+..
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~----g~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRR----GPRVVIFDPKGDYS 42 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHc----CCCEEEEcCCchHH
Confidence 3578999999999998765433333333 34678886664433
No 378
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.19 E-value=2.8 Score=39.38 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=21.4
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
-+.+.+|+|+|||.++...+. .+.. .+.+++++.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~-~l~~---~g~~V~Li~ 149 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAH-KYKA---QGKKVLLAA 149 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHHh---cCCeEEEEe
Confidence 367899999999987654332 2222 233566664
No 379
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.04 E-value=1.8 Score=39.44 Aligned_cols=50 Identities=16% Similarity=-0.005 Sum_probs=31.9
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
.++.++..+..+.=.++.|.||.|||..++-.+......+ +..++|++.-
T Consensus 8 ~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~---~~~vly~SlE 57 (259)
T PF03796_consen 8 ALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNG---GYPVLYFSLE 57 (259)
T ss_dssp HHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT---SSEEEEEESS
T ss_pred HHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhc---CCeEEEEcCC
Confidence 3455555444455588999999999987665555544442 2468888754
No 380
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.04 E-value=1.1 Score=44.88 Aligned_cols=36 Identities=8% Similarity=0.043 Sum_probs=24.3
Q ss_pred HHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcC
Q 011605 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (481)
Q Consensus 421 Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (481)
+++-++-|...+|..++.+.+...+.+..-++.+.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (486)
T PRK14953 405 AILKNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKK 440 (486)
T ss_pred HHHhhhhhhhhcCceEEEecccHHHHHHHHHHHHHH
Confidence 444567777777999988887766666555555543
No 381
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.03 E-value=0.94 Score=40.89 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.5
Q ss_pred CCEEEECCCCchhHHHh
Q 011605 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~ 86 (481)
.++++.+|+|.|||..+
T Consensus 53 DHvLl~GPPGlGKTTLA 69 (332)
T COG2255 53 DHVLLFGPPGLGKTTLA 69 (332)
T ss_pred CeEEeeCCCCCcHHHHH
Confidence 45899999999999754
No 382
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.02 E-value=0.84 Score=47.12 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 011605 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~ 88 (481)
....++.||.|+|||.++..
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred CceEEEECCCCCChHHHHHH
Confidence 34679999999999987654
No 383
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=0.83 Score=43.05 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=24.2
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHH
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (481)
+.+++.+|+|+|||+.+ ..+.... ..+.+=+....|...|
T Consensus 246 kgvLm~GPPGTGKTlLA-----KAvATEc---~tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA-----KAVATEC---GTTFFNVSSSTLTSKW 285 (491)
T ss_pred ceeeeeCCCCCcHHHHH-----HHHHHhh---cCeEEEechhhhhhhh
Confidence 57999999999999743 2222221 1455555555555443
No 384
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=89.91 E-value=0.52 Score=48.13 Aligned_cols=71 Identities=24% Similarity=0.034 Sum_probs=51.6
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHh--ccCCccEEEEcccHHHHHHHHHHHHH
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~--~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
.-+-.-|..|++..+. .+=.++.+|+|+|||++.+.++-..+.+. .....+++++|=|..-++|....+..
T Consensus 377 ~ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eeecHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 3455668888887665 55679999999999999877555444443 12334799999999988887766654
No 385
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=89.90 E-value=0.68 Score=44.15 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.2
Q ss_pred CEEEECCCCchhHHHhHH
Q 011605 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~ 88 (481)
..++.||.|+|||..+..
T Consensus 47 a~L~~G~~G~GKttlA~~ 64 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFH 64 (351)
T ss_pred eEeeECCCCCCHHHHHHH
Confidence 488999999999987644
No 386
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=89.85 E-value=0.72 Score=42.11 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=35.8
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 66 ~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+..++.+++.+++|+|||..++-.+...+.. +-++++++-. +...+..+.+..+.
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~----ge~vlyvs~~-e~~~~l~~~~~~~g 74 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE----GEPVLYVSTE-ESPEELLENARSFG 74 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc----CCcEEEEEec-CCHHHHHHHHHHcC
Confidence 3457789999999999998655444443333 4467777644 44555666666553
No 387
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.80 E-value=0.27 Score=44.95 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=24.1
Q ss_pred hhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhH
Q 011605 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 53 ~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~ 87 (481)
+...+..+.++..+..+.++++.||+|+|||..+.
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 33444444444444458899999999999998654
No 388
>PRK12608 transcription termination factor Rho; Provisional
Probab=89.80 E-value=3 Score=39.81 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=27.1
Q ss_pred hhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHH
Q 011605 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (481)
Q Consensus 53 ~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~ 96 (481)
..-.++++.+. .+-.|++.++.|+.|+|||..... ++..+..
T Consensus 118 ~~~~RvID~l~-PiGkGQR~LIvG~pGtGKTTLl~~-la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVA-PIGKGQRGLIVAPPRAGKTVLLQQ-IAAAVAA 159 (380)
T ss_pred chhHhhhhhee-ecCCCceEEEECCCCCCHHHHHHH-HHHHHHh
Confidence 34445655543 344688999999999999986433 3444433
No 389
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.79 E-value=1.4 Score=42.77 Aligned_cols=20 Identities=45% Similarity=0.483 Sum_probs=16.2
Q ss_pred EEEECCCCchhHHHhHHHHH
Q 011605 72 LCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~ 91 (481)
+++.+|+|+|||.++.-.+.
T Consensus 226 i~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999998765444
No 390
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.79 E-value=1.5 Score=42.66 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=35.9
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEecc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 137 (481)
+.-+.+.||||+|||.+....+...+.... .....++.+.+.... ..+.+..++...|+.+.....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~~ 256 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG-ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIKD 256 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCCC
Confidence 445889999999999876543332222211 112345555554443 234455565555666554433
No 391
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.71 E-value=0.91 Score=46.72 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.7
Q ss_pred CCEEEECCCCchhHHHhHH
Q 011605 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~ 88 (481)
...|+.||.|+|||.++..
T Consensus 39 ha~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3478999999999987654
No 392
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=89.51 E-value=2.5 Score=41.28 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=32.4
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc--cHHHHHHHHHHHHHhccccCceEEEec
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP--TRDLALQVKDVFAAIAPAVGLSVGLAV 136 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~ 136 (481)
+.+++++|+|||.++.-.+. .+.. .+.++++++. .+.-+. .+++.++...++.+....
T Consensus 103 i~lvG~~GvGKTTtaaKLA~-~l~~---~G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~ 162 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAY-YYQR---KGFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSY 162 (429)
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH---CCCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeec
Confidence 67899999999987654333 2332 2346666653 333332 344445544466554433
No 393
>PRK14701 reverse gyrase; Provisional
Probab=89.41 E-value=1.5 Score=50.44 Aligned_cols=64 Identities=17% Similarity=0.367 Sum_probs=54.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccc---cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~ 394 (481)
.+.++||.+|++..+.++++.++.+.. .+..+..+||+++..++.+.++.+.+|+.+|||+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 356899999999999999999987542 2467788999999999999999999999999999975
No 394
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=89.29 E-value=0.74 Score=43.60 Aligned_cols=39 Identities=15% Similarity=-0.148 Sum_probs=25.1
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHh--ccCCccEEEEccc
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPT 110 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~--~~~~~~~lil~Pt 110 (481)
..+.|++|+|||..++..++...... ...+.+++|+.--
T Consensus 129 tEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE 169 (344)
T PLN03187 129 TEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE 169 (344)
T ss_pred EEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence 66999999999987765444332221 1223578888653
No 395
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=89.27 E-value=1.4 Score=43.63 Aligned_cols=62 Identities=18% Similarity=0.127 Sum_probs=37.3
Q ss_pred hHHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 58 ~~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
-++.++. .+..|.-+++.+++|+|||...+..+.. +.. .+.+++|+..- +-..|+.....++
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~-~a~---~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ-LAK---NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH-HHh---cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 3455564 3334556889999999999876543333 222 23478888754 3345555544444
No 396
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=89.06 E-value=2.3 Score=46.07 Aligned_cols=79 Identities=10% Similarity=0.277 Sum_probs=65.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhc-cccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc-ccccCCCCCCCcEEE
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~-~l~~Gvdl~~~~~Vi 408 (481)
.+.++.|.++|.-.|++-.+.+++. .+..+++..+..-.+.+|..++++...+|+.+|+|+|. .++.+|-+.++..+|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 4568999999987777777666553 23448888999999999999999999999999999995 688889999999887
Q ss_pred E
Q 011605 409 N 409 (481)
Q Consensus 409 ~ 409 (481)
.
T Consensus 722 I 722 (1139)
T COG1197 722 I 722 (1139)
T ss_pred E
Confidence 6
No 397
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.02 E-value=0.95 Score=45.47 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=40.3
Q ss_pred HHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 59 ~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
++.++. .+..+...++.+++|+|||..++-.+...+.+. +-+++|++-- +-..++.+.+..+.
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~---ge~~lyvs~e-E~~~~l~~~~~~~G 73 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHF---DEPGVFVTFE-ESPQDIIKNARSFG 73 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC---CCCEEEEEEe-cCHHHHHHHHHHcC
Confidence 355554 344577799999999999987655444444331 3368888743 44555666666653
No 398
>PRK10436 hypothetical protein; Provisional
Probab=88.98 E-value=0.94 Score=44.86 Aligned_cols=46 Identities=33% Similarity=0.590 Sum_probs=28.3
Q ss_pred HHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHH
Q 011605 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 43 ~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l 94 (481)
|.++|+ .+.|.+.+..++.. .+.-++++||||||||.+. .+++..+
T Consensus 197 L~~LG~---~~~~~~~l~~~~~~--~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQQ--PQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHHh--cCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 345664 35555555555431 1344889999999999864 3345444
No 399
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=88.98 E-value=2.3 Score=41.75 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=16.6
Q ss_pred EEEECCCCchhHHHhHHHHHH
Q 011605 72 LCINSPTGSGKTLSYALPIVQ 92 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~ 92 (481)
+++++++|+|||.++.-.+..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 678999999999987654443
No 400
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.94 E-value=0.5 Score=44.68 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.+.+++++|+||||||..
T Consensus 159 ~~~nili~G~tgSGKTTl 176 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTF 176 (332)
T ss_pred cCCcEEEECCCCCCHHHH
Confidence 478999999999999975
No 401
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.90 E-value=0.94 Score=46.19 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.0
Q ss_pred CEEEECCCCchhHHHhHH
Q 011605 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~ 88 (481)
..++.||.|+|||.++..
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987644
No 402
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.78 E-value=2.2 Score=44.64 Aligned_cols=30 Identities=23% Similarity=0.239 Sum_probs=24.7
Q ss_pred CccEEEEechhHhhHHHHhhhHHHHHHhcc
Q 011605 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (481)
Q Consensus 197 ~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~ 226 (481)
+.-++|+|+.|.+.+......+..+++..+
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P 158 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAP 158 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCC
Confidence 346899999999988888888888887764
No 403
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=88.64 E-value=1.2 Score=39.71 Aligned_cols=61 Identities=13% Similarity=0.045 Sum_probs=35.5
Q ss_pred HHhhh-CCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 59 WQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 59 ~~~~~-~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
++.++ ..+..|..+++.+++|+|||..+...+...+.+ +.++++++- .....++.+..+.+
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~----g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD----GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 34444 234457779999999999998765444443332 335777763 23334444444433
No 404
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.34 E-value=0.62 Score=44.17 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=26.7
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
.+.+++++|+||||||... -+++..+. ...+++.+=.+.++
T Consensus 161 ~~~nilI~G~tGSGKTTll-~aLl~~i~----~~~rivtiEd~~El 201 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMS-KTLISAIP----PQERLITIEDTLEL 201 (344)
T ss_pred cCCeEEEECCCCccHHHHH-HHHHcccC----CCCCEEEECCCccc
Confidence 4788999999999999753 33333322 23356666566554
No 405
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.24 E-value=3.5 Score=40.97 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=56.5
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.++||.|-|+.-+.++.+.+++. ++++..++|+.+..+....+.. .-...+.|+|+|
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~-----------------FreG~~~vLVAT 398 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKG-----------------FREGKSPVLVAT 398 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHh-----------------cccCCcceEEEc
Confidence 4568999999999999888888776 6889999999987776544332 123458999999
Q ss_pred chHHHHHHhcCCCcccCCccEEE
Q 011605 180 PGRLMDHINATRGFTLEHLCYLV 202 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iV 202 (481)
. +. .+++++.++++||
T Consensus 399 d------VA-aRGLDi~dV~lVI 414 (519)
T KOG0331|consen 399 D------VA-ARGLDVPDVDLVI 414 (519)
T ss_pred c------cc-cccCCCccccEEE
Confidence 3 22 2557788888888
No 406
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=88.19 E-value=3.5 Score=34.81 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=15.0
Q ss_pred EEEECCCCchhHHHhHHHH
Q 011605 72 LCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~ 90 (481)
+++.+++|+|||......+
T Consensus 3 ~~~~G~~G~GKTt~~~~la 21 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLA 21 (173)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999998765433
No 407
>PHA00012 I assembly protein
Probab=88.16 E-value=0.97 Score=41.82 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=20.0
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHh
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNR 97 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~ 97 (481)
-++.|..|+|||+.++..+...+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47899999999998777666655553
No 408
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=88.09 E-value=2 Score=43.47 Aligned_cols=71 Identities=18% Similarity=0.416 Sum_probs=55.7
Q ss_pred EEEEecchhhHHHHHHHHhhcccc--ceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-----cccC-CCCCCCcE
Q 011605 335 CIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-MDVEGVNN 406 (481)
Q Consensus 335 ~lVf~~s~~~~~~l~~~L~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-----l~~G-vdl~~~~~ 406 (481)
+||++++++.|.++++.+..++.. +..+..+.|+++...+. +.++.| .+|||+|+- +..+ +++..+..
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999999999877532 46788999998875544 445556 999999963 4455 78888888
Q ss_pred EEE
Q 011605 407 VVN 409 (481)
Q Consensus 407 Vi~ 409 (481)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 886
No 409
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=87.83 E-value=0.4 Score=42.91 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.4
Q ss_pred EEEECCCCchhHHHh
Q 011605 72 LCINSPTGSGKTLSY 86 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~ 86 (481)
+++.|+.|+|||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 368999999999853
No 410
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=87.61 E-value=0.92 Score=40.28 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=23.3
Q ss_pred HhHHhhhCCCCCCCC-EEEECCCCchhHHHhHHHHHHH
Q 011605 57 AVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQT 93 (481)
Q Consensus 57 ~~~~~~~~~~~~~~~-~l~~~~tG~GKT~~~~~~~~~~ 93 (481)
+++..+...+..++. +.++++.|+|||...- +++..
T Consensus 38 e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s 74 (269)
T COG3267 38 EALLMLHAAIADGQGILAVTGEVGSGKTVLRR-ALLAS 74 (269)
T ss_pred HHHHHHHHHHhcCCceEEEEecCCCchhHHHH-HHHHh
Confidence 334444444445664 7799999999998765 34443
No 411
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=87.57 E-value=2.1 Score=43.17 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=14.8
Q ss_pred CEEEECCCCchhHHHhHH
Q 011605 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~ 88 (481)
..++.||.|+|||.++..
T Consensus 38 ayLf~Gp~G~GKTt~Ar~ 55 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARI 55 (535)
T ss_pred eEEEECCCCCcHHHHHHH
Confidence 358999999999987654
No 412
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=87.57 E-value=1.1 Score=43.57 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 011605 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~ 88 (481)
....++.||.|+|||..+..
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~ 55 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARA 55 (394)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 34588999999999987644
No 413
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=87.55 E-value=3.7 Score=36.85 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=31.1
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHH--------HhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLS--------NRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~--------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (481)
-.++.+|.|+|||..++-.++.... .....+.+++|+.--.. ..++.+.+..++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~-~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDP-REEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCC-HHHHHHHHHHHHh
Confidence 3689999999999876654443221 11123457888873221 2234445555543
No 414
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.52 E-value=3 Score=44.41 Aligned_cols=38 Identities=16% Similarity=-0.033 Sum_probs=23.6
Q ss_pred cchhhHHhHHhhhCCCC--CCCCEEEECCCCchhHHHhHH
Q 011605 51 LFPVQVAVWQETIGPGL--FERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~--~~~~~l~~~~tG~GKT~~~~~ 88 (481)
+--.|.+.+..++..+. ...+.++.||+|+|||..+-.
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 43445444444443221 246799999999999986543
No 415
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=87.45 E-value=4.8 Score=42.24 Aligned_cols=109 Identities=16% Similarity=0.179 Sum_probs=64.9
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccc----cceeEEEcccccChHHHHHHHHHHhc--------CCceEEEEccccccCC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFRE--------GKIQVLVSSDAMTRGM 399 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~----~~~~~~~~~~~~~~~~r~~~~~~f~~--------g~~~iLv~t~~l~~Gv 399 (481)
...+|+|+++....+++....+..+. .+..-..+-.. +..+-.+++..|-+ |..-+.||-...++|+
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr-~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPR-SKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccC-CccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 45699999999877777544432110 00111111111 33344555555542 2234556678899999
Q ss_pred CCCC--CcEEEEcCCCC--------------------------------------ChhHHHHHhhhcccCCCC-ccEEEE
Q 011605 400 DVEG--VNNVVNYDKPA--------------------------------------YIKTYIHRAGRTARAGQL-GRCFTL 438 (481)
Q Consensus 400 dl~~--~~~Vi~~~~~~--------------------------------------s~~~~~Q~~GR~~R~~~~-g~~~~~ 438 (481)
|+.+ .+.||..++|. ....+.|.+||+.|..++ |.++++
T Consensus 640 DFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~ 719 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILC 719 (945)
T ss_pred CccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEe
Confidence 9985 66788877661 122455999999997766 766655
Q ss_pred eec
Q 011605 439 LHK 441 (481)
Q Consensus 439 ~~~ 441 (481)
.++
T Consensus 720 D~R 722 (945)
T KOG1132|consen 720 DDR 722 (945)
T ss_pred ech
Confidence 443
No 416
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=87.44 E-value=0.68 Score=45.04 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=33.9
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
++++.||||+|||..++.|.+-. . ...++|+-|--++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---~---~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---W---PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---C---CCCEEEEccchhHHHHHHHHHHHc
Confidence 46899999999999887664432 1 236888888888887655544443
No 417
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=87.38 E-value=2.4 Score=41.36 Aligned_cols=69 Identities=19% Similarity=0.070 Sum_probs=47.6
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
.+-..|.++.-.... |.. .+.+=.|||||...++-+.. + ..+.++.++++-+=|+.|+.++...+.+++
T Consensus 162 nfD~~Q~kaa~~~~~----G~q-rIrGLAGSGKT~~La~Kaa~-l-h~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 162 NFDTDQTKAAFQSGF----GKQ-RIRGLAGSGKTELLAHKAAE-L-HSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cccchhheeeeecCC----chh-hhhcccCCCchhHHHHHHHH-H-hcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 455777776433222 333 67888999999865443332 2 223566789999999999999988888776
No 418
>PRK06904 replicative DNA helicase; Validated
Probab=87.38 E-value=6.2 Score=39.45 Aligned_cols=61 Identities=11% Similarity=-0.143 Sum_probs=33.1
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHH
Q 011605 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 122 (481)
.++.+...+..|.=+++.|.||.|||..++-.+...... .+.+++|++.- --..|+...+-
T Consensus 210 ~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~---~g~~Vl~fSlE-Ms~~ql~~Rll 270 (472)
T PRK06904 210 DLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA---SEKPVLVFSLE-MPAEQIMMRML 270 (472)
T ss_pred HHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh---cCCeEEEEecc-CCHHHHHHHHH
Confidence 345555444444457889999999998654333322222 13357776533 33444444433
No 419
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.22 E-value=3.2 Score=41.19 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.6
Q ss_pred CCEEEECCCCchhHHHhHH
Q 011605 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~ 88 (481)
...++.||.|+|||.++..
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARI 58 (451)
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 3478999999999987654
No 420
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=87.21 E-value=3.5 Score=39.70 Aligned_cols=42 Identities=29% Similarity=0.208 Sum_probs=24.0
Q ss_pred EEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHH
Q 011605 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 73 l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (481)
++.++.|+|||......++..+...+. ...++++ ++..-+.+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-GRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS---EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-CcEEEEe-cCHHHHHH
Confidence 467899999999877666665555321 2344444 76666554
No 421
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.19 E-value=7.1 Score=36.39 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=31.6
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc-ccHHHHHHHHHHHHHhccccCceEEE
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-PTRDLALQVKDVFAAIAPAVGLSVGL 134 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~-Pt~~L~~q~~~~~~~~~~~~~~~~~~ 134 (481)
+++++.+|+|||.+..- +..++.. .+.++++.+ -|-.-+ -.++++.++...|..+..
T Consensus 142 il~vGVNG~GKTTTIaK-LA~~l~~---~g~~VllaA~DTFRAa--AiEQL~~w~er~gv~vI~ 199 (340)
T COG0552 142 ILFVGVNGVGKTTTIAK-LAKYLKQ---QGKSVLLAAGDTFRAA--AIEQLEVWGERLGVPVIS 199 (340)
T ss_pred EEEEecCCCchHhHHHH-HHHHHHH---CCCeEEEEecchHHHH--HHHHHHHHHHHhCCeEEc
Confidence 67899999999988543 3333333 233566654 332211 233445555545766555
No 422
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.11 E-value=1.5 Score=40.07 Aligned_cols=46 Identities=24% Similarity=0.487 Sum_probs=28.9
Q ss_pred HHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHH
Q 011605 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 43 ~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l 94 (481)
+.++|+ .+.|.+.+..++.. .+..+++.++||+|||... .+++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 456664 45566666665541 1345889999999999864 3344433
No 423
>PRK08727 hypothetical protein; Validated
Probab=87.07 E-value=5.3 Score=35.73 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=27.4
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHH
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
..+++.|++|+|||-.... +...+.. .+.+++++. ..++.....+.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a-~~~~~~~---~~~~~~y~~-~~~~~~~~~~~~~~ 90 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA-LCAAAEQ---AGRSSAYLP-LQAAAGRLRDALEA 90 (233)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHH---cCCcEEEEe-HHHhhhhHHHHHHH
Confidence 4489999999999965432 2223332 234677765 33444433333333
No 424
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=87.02 E-value=4.3 Score=38.31 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=16.2
Q ss_pred CCC-EEEECCCCchhHHHhHH
Q 011605 69 ERD-LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~-~l~~~~tG~GKT~~~~~ 88 (481)
... .++.||.|+|||.++..
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~ 43 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALA 43 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHH
Confidence 345 89999999999987644
No 425
>PHA00350 putative assembly protein
Probab=86.95 E-value=1.4 Score=42.47 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=13.9
Q ss_pred EEEECCCCchhHHHhHH
Q 011605 72 LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~ 88 (481)
.++.|..|+|||+.++.
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 36899999999987654
No 426
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=86.76 E-value=4.8 Score=39.70 Aligned_cols=48 Identities=10% Similarity=-0.110 Sum_probs=31.3
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
.++.++..+..|.=+++.|++|+|||..++-.+...... .+.+++|+.
T Consensus 183 ~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~---~g~~v~~fS 230 (421)
T TIGR03600 183 KLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR---EGKPVLFFS 230 (421)
T ss_pred hHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh---CCCcEEEEE
Confidence 456666655556668899999999998765544333222 233677776
No 427
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=86.59 E-value=1.7 Score=48.48 Aligned_cols=78 Identities=9% Similarity=0.295 Sum_probs=57.6
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccc-cce---eEEEcccccChHHHHHHHHHHhcCCceEEEEcccc-ccCCC-CC-CC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGE-LRI---KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM-TRGMD-VE-GV 404 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l-~~Gvd-l~-~~ 404 (481)
+.+++|.+|++..+.++++.+..+.. .+. .++.+||+++..++....+.+.+|..+|||+|+.. ...++ +. .+
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~ 200 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKF 200 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCC
Confidence 57899999999999999998887542 112 24468999999999888899999999999999642 21111 12 46
Q ss_pred cEEEE
Q 011605 405 NNVVN 409 (481)
Q Consensus 405 ~~Vi~ 409 (481)
+++|.
T Consensus 201 ~~iVv 205 (1171)
T TIGR01054 201 DFIFV 205 (1171)
T ss_pred CEEEE
Confidence 66665
No 428
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=86.56 E-value=1.8 Score=38.52 Aligned_cols=60 Identities=17% Similarity=0.064 Sum_probs=37.0
Q ss_pred HhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 60 QETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 60 ~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
+.++. .+..+.-+++.+++|+|||..++-.+...+.+ +.+++|++-.. -..++.+.+..+
T Consensus 6 D~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~----g~~~~y~s~e~-~~~~l~~~~~~~ 66 (224)
T TIGR03880 6 DEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN----GEKAMYISLEE-REERILGYAKSK 66 (224)
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECCC-CHHHHHHHHHHc
Confidence 44443 33346668899999999998765444443333 34688876543 355566666555
No 429
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=86.44 E-value=2 Score=41.32 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=16.1
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 011605 70 RDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~ 89 (481)
...++.||.|+||+..+...
T Consensus 42 HA~Lf~Gp~G~GK~~lA~~~ 61 (365)
T PRK07471 42 HAWLIGGPQGIGKATLAYRM 61 (365)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 34889999999999876543
No 430
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=86.43 E-value=1.9 Score=44.99 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.4
Q ss_pred EEEECCCCchhHHHhHH
Q 011605 72 LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~ 88 (481)
.++.||.|+|||.++..
T Consensus 43 YLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKI 59 (725)
T ss_pred EEEECCCCCcHHHHHHH
Confidence 58999999999987644
No 431
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.41 E-value=0.55 Score=44.82 Aligned_cols=20 Identities=40% Similarity=0.509 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 011605 68 FERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~ 87 (481)
...|+|+.+|||+|||+.+.
T Consensus 225 eKSNvLllGPtGsGKTllaq 244 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQ 244 (564)
T ss_pred ecccEEEECCCCCchhHHHH
Confidence 35789999999999998653
No 432
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=86.30 E-value=0.96 Score=45.38 Aligned_cols=49 Identities=27% Similarity=0.317 Sum_probs=35.5
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.++++.||||+|||..+++|.+- .. + ..++|.-|--+|........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll---~~--~-~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL---NY--P-GSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH---hc--c-CCEEEEECCCcHHHHHHHHHHHC
Confidence 36999999999999998877542 21 1 15888888888877666555554
No 433
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=86.26 E-value=0.96 Score=39.56 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=22.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
..++++.|.||+|||......+...+.........+.++=+.
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 568999999999999875544444433222233344444443
No 434
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=86.25 E-value=2.5 Score=44.50 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.3
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
.++++.||+|+|||..+.
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999997653
No 435
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.12 E-value=2.5 Score=45.61 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.8
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 011605 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~ 88 (481)
.++.++.||+|+|||..+-.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred cCCeEEECCCCCCHHHHHHH
Confidence 46899999999999987643
No 436
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=86.03 E-value=2 Score=41.30 Aligned_cols=26 Identities=31% Similarity=0.151 Sum_probs=18.8
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~ 95 (481)
+..+++++|||||||... .+++..+.
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 456899999999999864 34555443
No 437
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=86.01 E-value=2.6 Score=45.10 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+..+++.+|+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999754
No 438
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=85.95 E-value=1.4 Score=39.23 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=29.7
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (481)
++++.|.|.||+|||.+.-. ++..+.. ..+.+++|+=|.-+
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~-ll~~l~~--~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKV-LLEELLK--KKGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEECCCCCCHHHHHHH-HHHHHHh--cCCCCEEEEcCCCc
Confidence 57899999999999987544 5555553 23447888877744
No 439
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.94 E-value=4.4 Score=38.29 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-c--
Q 011605 320 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-- 395 (481)
Q Consensus 320 ~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l-- 395 (481)
++.+..++.+-..-.++|.+++++.+.+|++.+..+| .-+..+..+-|+++. +......+ .+..|||||+- +
T Consensus 117 LPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m--~~q~~~L~--kkPhilVaTPGrL~d 192 (476)
T KOG0330|consen 117 LPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDM--MLQANQLS--KKPHILVATPGRLWD 192 (476)
T ss_pred HHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchH--HHHHHHhh--cCCCEEEeCcHHHHH
Confidence 4556666666566789999999999999999999885 466788899999986 33333333 35678999963 1
Q ss_pred ----ccCCCCCCCcEEEE
Q 011605 396 ----TRGMDVEGVNNVVN 409 (481)
Q Consensus 396 ----~~Gvdl~~~~~Vi~ 409 (481)
..|+.+..+++.|+
T Consensus 193 hl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 193 HLENTKGFSLEQLKFLVL 210 (476)
T ss_pred HHHhccCccHHHhHHHhh
Confidence 36777777776664
No 440
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=85.84 E-value=1.2 Score=39.11 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=26.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
+.-..+.+++|+|||..++-.+...... +.+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~----g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ----GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECC
Confidence 4557899999999998876544443322 3467777654
No 441
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=85.75 E-value=0.68 Score=42.56 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=26.6
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
.+.++++.|+||||||... .+++..+... ..+++++=.+.++
T Consensus 126 ~~~~ili~G~tGSGKTT~l-~all~~i~~~---~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLL-NALLEEIPPE---DERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHCHTT---TSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHH-HHHhhhcccc---ccceEEeccccce
Confidence 3678999999999999764 3344443332 2356666555444
No 442
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=85.64 E-value=2.7 Score=38.41 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=16.9
Q ss_pred EECCCCchhHHHhHHHHHHHHHHh
Q 011605 74 INSPTGSGKTLSYALPIVQTLSNR 97 (481)
Q Consensus 74 ~~~~tG~GKT~~~~~~~~~~l~~~ 97 (481)
+.|+||+||.+++-+ +.+.+...
T Consensus 115 fHG~tGTGKN~Va~i-iA~n~~~~ 137 (344)
T KOG2170|consen 115 FHGWTGTGKNYVAEI-IAENLYRG 137 (344)
T ss_pred ecCCCCCchhHHHHH-HHHHHHhc
Confidence 589999999998765 44444443
No 443
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=85.62 E-value=1.7 Score=38.42 Aligned_cols=46 Identities=20% Similarity=0.110 Sum_probs=29.5
Q ss_pred HHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 59 ~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
++.++. .+..+.-+.+.+++|+|||..++..+..... .+.+++++.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~----~g~~v~yi~ 54 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG----QGKKVAYID 54 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEE
Confidence 455554 2334555889999999999877655444332 234677773
No 444
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.61 E-value=7 Score=33.94 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=23.5
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
=+++.++.|+|||...+-.++-.+.++. ++.+++
T Consensus 30 L~lIEGd~~tGKSvLsqr~~YG~L~~g~----~v~yvs 63 (235)
T COG2874 30 LILIEGDNGTGKSVLSQRFAYGFLMNGY----RVTYVS 63 (235)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhCCc----eEEEEE
Confidence 3789999999999876665555555542 455554
No 445
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=85.30 E-value=30 Score=31.71 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=20.8
Q ss_pred cchhhHHHHHHHHhhccccceeEEEcccccC
Q 011605 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (481)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 370 (481)
.|+..++++++.|++.+ ..+...|-.+.
T Consensus 255 RSV~iae~La~~L~~~~---~~v~v~HRdl~ 282 (284)
T PF03668_consen 255 RSVAIAERLAERLREKG---YTVVVRHRDLE 282 (284)
T ss_pred cHHHHHHHHHHHHHhcC---CcceEEcCCCC
Confidence 34888999999998876 56666676554
No 446
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.28 E-value=2.1 Score=45.32 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.6
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
.+++.||||+|||..+-
T Consensus 490 ~~Lf~GP~GvGKT~lAk 506 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999998653
No 447
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=85.24 E-value=3.7 Score=39.16 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=37.2
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHH---hccccCceEEEeccCcchHHH
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA---IAPAVGLSVGLAVGQSSIADE 144 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~---~~~~~~~~~~~~~g~~~~~~~ 144 (481)
.++|+++|+|+|||..+-+-+- ..+....-+..+..-+.++..-+.+ .... |..+.+.....+...+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~-------~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~-gr~tiLflDEIHRfnK 118 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAG-------TTNAAFEALSAVTSGVKDLREIIEEARKNRLL-GRRTILFLDEIHRFNK 118 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHH-------hhCCceEEeccccccHHHHHHHHHHHHHHHhc-CCceEEEEehhhhcCh
Confidence 5799999999999986533211 1222455555554444444433332 2221 5566666666654433
No 448
>PRK08760 replicative DNA helicase; Provisional
Probab=85.23 E-value=6.6 Score=39.32 Aligned_cols=63 Identities=10% Similarity=-0.157 Sum_probs=35.6
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.++.+...+..|.=+++.|.+|.|||..++-.+....... +.+++|.+.-. -..|+...+...
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~---g~~V~~fSlEM-s~~ql~~Rl~a~ 280 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKS---KKGVAVFSMEM-SASQLAMRLISS 280 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhc---CCceEEEeccC-CHHHHHHHHHHh
Confidence 3455555554455578899999999987654443332221 23577765332 234455544433
No 449
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=85.22 E-value=8.5 Score=37.82 Aligned_cols=127 Identities=14% Similarity=0.223 Sum_probs=87.6
Q ss_pred HHhcCCCeEEEEecchhhHHHHHHHHhhc-cccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc-----ccccC-C
Q 011605 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-M 399 (481)
Q Consensus 327 l~~~~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~-----~l~~G-v 399 (481)
++..+ +++|+..||...+.+-++.+.+. +.....+..+.|..+..+|..... +.+|+|+|+ .+-.| +
T Consensus 54 l~~~~-~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Gri 127 (542)
T COG1111 54 LRWFG-GKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRI 127 (542)
T ss_pred HHhcC-CeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCcc
Confidence 34443 48999999988888888777653 333356788999999988886554 358999985 23455 8
Q ss_pred CCCCCcEEEEcCCCCChh--HHHHHhhhcccCCCC--ccEEEEeecchHHHHHHHHHHhcCCCC
Q 011605 400 DVEGVNNVVNYDKPAYIK--TYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLLQKADNDSC 459 (481)
Q Consensus 400 dl~~~~~Vi~~~~~~s~~--~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (481)
|+.++.++|+-....... .|.+.+-...|.... =.+.+-...++.+.+.++++.|.....
T Consensus 128 d~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~v 191 (542)
T COG1111 128 DLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKV 191 (542)
T ss_pred ChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceE
Confidence 999999998866554433 455666556664433 222333456788999999999877664
No 450
>PRK04841 transcriptional regulator MalT; Provisional
Probab=85.20 E-value=4.9 Score=44.20 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=21.3
Q ss_pred CccEEEEechhHhhHHHHhhhHHHHHHhc
Q 011605 197 HLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (481)
Q Consensus 197 ~~~~iVvDE~H~l~~~~~~~~~~~l~~~~ 225 (481)
..-+||+|++|.+.+......+..++...
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~ 149 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQ 149 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhC
Confidence 34589999999886666666777777654
No 451
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=85.19 E-value=1.1 Score=45.81 Aligned_cols=46 Identities=33% Similarity=0.491 Sum_probs=28.9
Q ss_pred HHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHH
Q 011605 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 43 ~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l 94 (481)
+.++|| .+.|.+.+..++.. .+.-++++||||||||.+. .+++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~--~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHK--PQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 456675 35555565555531 1344789999999999874 3455544
No 452
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=85.19 E-value=7.6 Score=33.65 Aligned_cols=77 Identities=16% Similarity=0.303 Sum_probs=52.6
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-----cccC-CCCCC
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-MDVEG 403 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-----l~~G-vdl~~ 403 (481)
.+.+++|.+++...+.+.+..+.... ..+..+..++|+.+..+.....+ ++.+|+|+|.. +..+ .++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 35689999999999999888776653 23467778888887654433322 56789999942 2222 56677
Q ss_pred CcEEEEcC
Q 011605 404 VNNVVNYD 411 (481)
Q Consensus 404 ~~~Vi~~~ 411 (481)
++.+|.-+
T Consensus 144 l~~lIvDE 151 (203)
T cd00268 144 VKYLVLDE 151 (203)
T ss_pred CCEEEEeC
Confidence 88877544
No 453
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=85.04 E-value=0.42 Score=41.30 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=13.6
Q ss_pred CCCCEEEECCCCchhHHHh
Q 011605 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~ 86 (481)
.+.++++.+|.|+|||..+
T Consensus 21 G~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp CC--EEEES-CCCTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 3678999999999999753
No 454
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.02 E-value=2.2 Score=42.79 Aligned_cols=45 Identities=27% Similarity=0.495 Sum_probs=28.2
Q ss_pred HHHCCCCccchhhHHhHHhhhCCCCCCCC-EEEECCCCchhHHHhHHHHHHHH
Q 011605 43 LQNMGISSLFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 43 ~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~-~l~~~~tG~GKT~~~~~~~~~~l 94 (481)
+.++|| .+.|.+.+..++. ..+. ++++||||||||.+. .+++..+
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~---~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIR---RPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHh---cCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 445665 4556666666554 2334 689999999999864 3344443
No 455
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=85.00 E-value=1.7 Score=44.61 Aligned_cols=54 Identities=20% Similarity=0.093 Sum_probs=36.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHH--HHHHHHHHHHHhcc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD--LALQVKDVFAAIAP 126 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~--L~~q~~~~~~~~~~ 126 (481)
..+.++.|+||+|||......+.+.+..+ ..++++=|-.. +...+...+++.++
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~g----~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRRG----DVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 56799999999999998766555555443 36777777653 44444555555544
No 456
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.98 E-value=6.6 Score=37.90 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=14.9
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
...++.||.|+|||..+.
T Consensus 40 ~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR 57 (367)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997653
No 457
>CHL00095 clpC Clp protease ATP binding subunit
Probab=84.95 E-value=2 Score=46.42 Aligned_cols=35 Identities=20% Similarity=0.020 Sum_probs=23.6
Q ss_pred hhhHHhHHhhhCCCCC--------C---CCEEEECCCCchhHHHhH
Q 011605 53 PVQVAVWQETIGPGLF--------E---RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 53 ~~Q~~~~~~~~~~~~~--------~---~~~l~~~~tG~GKT~~~~ 87 (481)
-.|.+|+..+...+.. + ..+++.||||+|||..+-
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~ 557 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTK 557 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHH
Confidence 4688877766543321 1 137899999999998653
No 458
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=84.87 E-value=2 Score=38.21 Aligned_cols=48 Identities=23% Similarity=0.135 Sum_probs=30.4
Q ss_pred HHhhhCC-CCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 59 WQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 59 ~~~~~~~-~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
++.++.. +..|.-..+.+++|+|||..++-.+...+.. +.+++|+.-.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~----~~~v~yi~~e 60 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN----GKKVIYIDTE 60 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEECC
Confidence 4555542 3335568899999999998776555544332 3467777543
No 459
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.85 E-value=2.6 Score=37.51 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+..+++.|++|+|||..+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 460
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.72 E-value=7.4 Score=38.82 Aligned_cols=103 Identities=14% Similarity=0.138 Sum_probs=73.7
Q ss_pred CCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhcccccc
Q 011605 77 PTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156 (481)
Q Consensus 77 ~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 156 (481)
-.++||+..-++++.+.+..+ -.|.++|.+-+.+-+.|.+.++. .+ -++++..++|..+.......
T Consensus 365 lvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~-~~--~~i~v~vIh~e~~~~qrde~--------- 430 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELE-IY--DNINVDVIHGERSQKQRDET--------- 430 (593)
T ss_pred heeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhh-hc--cCcceeeEecccchhHHHHH---------
Confidence 347788877777777766665 56789999999999999888886 22 37888899998665444222
Q ss_pred CccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
+.+.......++||| +++.+ +.+|.++++||-+++-.
T Consensus 431 --------~~~FR~g~IwvLicT-----dll~R--GiDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 431 --------MERFRIGKIWVLICT-----DLLAR--GIDFKGVNLVINYDFPQ 467 (593)
T ss_pred --------HHHHhccCeeEEEeh-----hhhhc--cccccCcceEEecCCCc
Confidence 223334557899999 34443 47899999999988774
No 461
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=84.65 E-value=3 Score=44.38 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.2
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
.+++.||||+|||..+-
T Consensus 486 ~~lf~Gp~GvGKT~lA~ 502 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAK 502 (731)
T ss_pred eEEEECCCCccHHHHHH
Confidence 37899999999997653
No 462
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=84.58 E-value=9.8 Score=39.66 Aligned_cols=77 Identities=17% Similarity=0.307 Sum_probs=53.0
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccc--cceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc-----cccc-CCCCC
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVE 402 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~-----~l~~-Gvdl~ 402 (481)
...++||.|++++.+.++++.+..+.. .+..+..++|+.+....... +. ...+|+|+|+ .+.. .+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~---l~-~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA---LR-QGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcchh
Confidence 345899999999999999988776532 24677788888775443332 22 4578999994 2223 36788
Q ss_pred CCcEEEEcC
Q 011605 403 GVNNVVNYD 411 (481)
Q Consensus 403 ~~~~Vi~~~ 411 (481)
++..||.-.
T Consensus 149 ~l~~lVlDE 157 (629)
T PRK11634 149 KLSGLVLDE 157 (629)
T ss_pred hceEEEecc
Confidence 888877543
No 463
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=84.54 E-value=1.1 Score=45.83 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=37.3
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.++++.||||+|||..++.|.+-.. +..++|+=|--++........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5689999999999999988865432 225888889988887766655554
No 464
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=84.49 E-value=2.4 Score=43.98 Aligned_cols=53 Identities=23% Similarity=0.201 Sum_probs=35.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHH--HHHHHHHHHHHhc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD--LALQVKDVFAAIA 125 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~--L~~q~~~~~~~~~ 125 (481)
..++++.|+||+|||..+...+.+.+..+ ..++++=|--. |...+...+++.+
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~g----~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRRG----DVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 57799999999999987655444444433 35777767644 5555555555553
No 465
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=84.36 E-value=2.3 Score=36.60 Aligned_cols=63 Identities=24% Similarity=0.131 Sum_probs=36.1
Q ss_pred hhCCCC-CCCCEEEECCCCchhHHHhHHHHHHHHHHh------ccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 62 TIGPGL-FERDLCINSPTGSGKTLSYALPIVQTLSNR------AVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 62 ~~~~~~-~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
++..+. .|.-.++.|++|+|||...+-.+...+... .....+++++..-.. ..++.+.+..+.
T Consensus 24 li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 24 LIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp EETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred eECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 344443 355589999999999987665454444311 013457888865544 556667777664
No 466
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=84.36 E-value=1.6 Score=43.61 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=16.9
Q ss_pred cCCccEEEEechhHhhHHHHhh
Q 011605 195 LEHLCYLVVDETDRLLREAYQA 216 (481)
Q Consensus 195 ~~~~~~iVvDE~H~l~~~~~~~ 216 (481)
..+++++|+||+|.+...+|..
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNA 138 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNA 138 (515)
T ss_pred cccceEEEEecHHhhhHHHHHH
Confidence 5678999999999876555543
No 467
>PRK05642 DNA replication initiation factor; Validated
Probab=84.26 E-value=7.9 Score=34.64 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=25.1
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHH
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (481)
..++++|++|+|||.... ++...+.. .+.+++|+.. ..+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~-a~~~~~~~---~~~~v~y~~~-~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ-AACLRFEQ---RGEPAVYLPL-AELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh---CCCcEEEeeH-HHHHh
Confidence 458899999999997532 23333322 2346777654 45544
No 468
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.21 E-value=2.1 Score=47.74 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=43.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHh-ccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
....+|.|..|||||++....++..+..+ ...-.++|+|+=|++-+.++...+++.
T Consensus 9 ~G~~lieAsAGtGKT~ti~~~~lrll~~~~~~~~~~iLvvTFT~aAt~el~~RIr~r 65 (1087)
T TIGR00609 9 NGTFLIEASAGTGKTFTIAQLYLRLLLEGGPLTVEEILVVTFTNAATEELKTRIRGR 65 (1087)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHhcCCCCChhhEEEEehhHHHHHHHHHHHHHH
Confidence 34689999999999998766666666654 234458999999988888888777754
No 469
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.11 E-value=3.5 Score=42.68 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=14.7
Q ss_pred CEEEECCCCchhHHHhHH
Q 011605 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~ 88 (481)
..|++||.|+|||.++..
T Consensus 41 ayLf~Gp~G~GKtt~A~~ 58 (614)
T PRK14971 41 AYLFCGPRGVGKTTCARI 58 (614)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 378999999999985543
No 470
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=83.95 E-value=3.1 Score=39.56 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=36.6
Q ss_pred HHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 41 ~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
..+.+.|+ +.+.+.+.+..++. .+.++++.++||+|||... .+++..+. ...+++++--+.++
T Consensus 155 ~~l~~~g~--~~~~~~~~L~~~v~---~~~~ili~G~tGsGKTTll-~al~~~i~----~~~riv~iEd~~El 217 (340)
T TIGR03819 155 DELVASGT--FPPGVARLLRAIVA---ARLAFLISGGTGSGKTTLL-SALLALVA----PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHh---CCCeEEEECCCCCCHHHHH-HHHHccCC----CCCcEEEECCccee
Confidence 33444554 44555555555554 3678999999999999743 22332222 22356666555454
No 471
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=83.78 E-value=12 Score=34.95 Aligned_cols=95 Identities=17% Similarity=0.273 Sum_probs=62.7
Q ss_pred HHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhh
Q 011605 90 IVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169 (481)
Q Consensus 90 ~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (481)
+..++......+..++|.+|+.+..+|.+..++..... ..++.+++......+..+..++
T Consensus 294 l~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~--~~i~~Vhs~d~~R~EkV~~fR~------------------ 353 (441)
T COG4098 294 LKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPK--ETIASVHSEDQHRKEKVEAFRD------------------ 353 (441)
T ss_pred HHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCc--cceeeeeccCccHHHHHHHHHc------------------
Confidence 44444444456678999999999999999888665543 3445555555444444433322
Q ss_pred cCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHH
Q 011605 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212 (481)
Q Consensus 170 ~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~ 212 (481)
...+|+|+|. .++ +++.+.++++.|++--|.+...
T Consensus 354 -G~~~lLiTTT-----ILE--RGVTfp~vdV~Vlgaeh~vfTe 388 (441)
T COG4098 354 -GKITLLITTT-----ILE--RGVTFPNVDVFVLGAEHRVFTE 388 (441)
T ss_pred -CceEEEEEee-----hhh--cccccccceEEEecCCcccccH
Confidence 3468999993 334 3467889999999988866433
No 472
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=83.67 E-value=3.2 Score=42.16 Aligned_cols=63 Identities=14% Similarity=0.053 Sum_probs=38.5
Q ss_pred hHHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 58 ~~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.++.++. .+..|+-+++.+++|+|||..++-.+...+.+. +.+++|++=. +-..++.+.+..+
T Consensus 19 ~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~---ge~~lyis~e-e~~~~i~~~~~~~ 82 (509)
T PRK09302 19 GFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRF---DEPGVFVTFE-ESPEDIIRNVASF 82 (509)
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCCEEEEEcc-CCHHHHHHHHHHc
Confidence 3445553 344577789999999999987655444444431 3468777532 3344555555555
No 473
>PHA02244 ATPase-like protein
Probab=83.42 E-value=1.5 Score=41.66 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=16.9
Q ss_pred CCCCCEEEECCCCchhHHHh
Q 011605 67 LFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 67 ~~~~~~l~~~~tG~GKT~~~ 86 (481)
..+.++++.||||+|||..+
T Consensus 117 ~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred hcCCCEEEECCCCCCHHHHH
Confidence 35788999999999999754
No 474
>PRK13531 regulatory ATPase RavA; Provisional
Probab=83.26 E-value=0.82 Score=45.08 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=27.2
Q ss_pred hhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 011605 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 53 ~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~ 86 (481)
..|.+++..++.....+.++++.||+|+|||..+
T Consensus 23 ~gre~vI~lll~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 23 YERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred cCcHHHHHHHHHHHccCCCEEEECCCChhHHHHH
Confidence 4566666666666667999999999999999865
No 475
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=82.99 E-value=9.9 Score=38.04 Aligned_cols=75 Identities=13% Similarity=0.262 Sum_probs=53.7
Q ss_pred CeEEEEecchhhHHHHHHHHhhccc--cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-----cc-cCCCCCCC
Q 011605 333 EKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MT-RGMDVEGV 404 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-----l~-~Gvdl~~~ 404 (481)
.++||.+++++.+.++++.++.+.. .+..+..++|+.+.......+. +..+|+|+|+- +. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 4789999999999999988876532 2467888899888755443332 56789999942 22 34678888
Q ss_pred cEEEEcC
Q 011605 405 NNVVNYD 411 (481)
Q Consensus 405 ~~Vi~~~ 411 (481)
+.+|.-.
T Consensus 149 ~~lViDE 155 (460)
T PRK11776 149 NTLVLDE 155 (460)
T ss_pred CEEEEEC
Confidence 8888644
No 476
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=82.97 E-value=3.4 Score=39.20 Aligned_cols=40 Identities=15% Similarity=-0.082 Sum_probs=24.4
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHH--hccCCccEEEEccc
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSN--RAVRCLRALVVLPT 110 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~--~~~~~~~~lil~Pt 110 (481)
=..+.+++|+|||..++..+...... ....+.+++|+.--
T Consensus 125 i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE 166 (342)
T PLN03186 125 ITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTE 166 (342)
T ss_pred EEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECC
Confidence 36799999999998876444332221 11123378888533
No 477
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=82.91 E-value=1.1 Score=30.29 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.5
Q ss_pred CCCEEEECCCCchhHHH
Q 011605 69 ERDLCINSPTGSGKTLS 85 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~ 85 (481)
+...++.+++|+|||..
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34689999999999975
No 478
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=82.86 E-value=2 Score=39.79 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+.++++.||+|+|||.++-
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4479999999999998753
No 479
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.86 E-value=0.56 Score=47.87 Aligned_cols=69 Identities=16% Similarity=0.140 Sum_probs=40.7
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEE-cccHHHHHHHHH
Q 011605 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-LPTRDLALQVKD 119 (481)
Q Consensus 47 ~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil-~Pt~~L~~q~~~ 119 (481)
.|.+|..--...++.+--.+..|+.+.+++|.|+|||.++. ++.+++... ..++++= +|-+++-.++.+
T Consensus 472 sFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTias--LL~rfY~Pt--sG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 472 SFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIAS--LLLRFYDPT--SGRILLDGVPISDINHKYLR 541 (716)
T ss_pred eeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHH--HHHHhcCCC--CCeEEECCeehhhcCHHHHH
Confidence 45555554433444333334458889999999999998653 555666532 2233222 577776665554
No 480
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.84 E-value=12 Score=34.65 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=34.4
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHH--hccCCccEEEEcccHHHHHHHH-----------HHHHHhccccCceEEEe
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSN--RAVRCLRALVVLPTRDLALQVK-----------DVFAAIAPAVGLSVGLA 135 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~--~~~~~~~~lil~Pt~~L~~q~~-----------~~~~~~~~~~~~~~~~~ 135 (481)
+=+++.||+|+|||-.+ -++.+.+.- ........+|=.....|...|+ ..++++...-|.=++++
T Consensus 178 RliLlhGPPGTGKTSLC-KaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLC-KALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eEEEEeCCCCCChhHHH-HHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 33788999999999754 223333311 1111223555566666555554 44555555444434443
No 481
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=82.57 E-value=2.5 Score=35.59 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=14.7
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
...+++.+++|+||+..+
T Consensus 22 ~~pVlI~GE~GtGK~~lA 39 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLA 39 (168)
T ss_dssp TS-EEEECSTTSSHHHHH
T ss_pred CCCEEEEcCCCCcHHHHH
Confidence 467999999999999853
No 482
>PRK08840 replicative DNA helicase; Provisional
Probab=82.55 E-value=14 Score=36.88 Aligned_cols=47 Identities=9% Similarity=-0.093 Sum_probs=28.5
Q ss_pred HHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 59 ~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
++.+...+..|.=+++.|.||.|||..++-.+...... .+..++|..
T Consensus 207 LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~---~~~~v~~fS 253 (464)
T PRK08840 207 LNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD---QDKPVLIFS 253 (464)
T ss_pred HHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh---CCCeEEEEe
Confidence 35555555445557889999999998764433332222 133577765
No 483
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.49 E-value=0.93 Score=36.70 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.3
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
++++.||+|+|||..+-
T Consensus 1 ~vlL~G~~G~GKt~l~~ 17 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLAR 17 (139)
T ss_dssp EEEEEESSSSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 484
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=82.42 E-value=1 Score=35.28 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=13.4
Q ss_pred EEEECCCCchhHHHhH
Q 011605 72 LCINSPTGSGKTLSYA 87 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~ 87 (481)
+++.|++|+|||..+-
T Consensus 2 I~I~G~~gsGKST~a~ 17 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAK 17 (121)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999998653
No 485
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=82.35 E-value=2.4 Score=41.07 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=17.7
Q ss_pred CCCCCEEEECCCCchhHHHhH
Q 011605 67 LFERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 67 ~~~~~~l~~~~tG~GKT~~~~ 87 (481)
.++.|++..+|+|+|||..+.
T Consensus 207 e~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHH
Confidence 357899999999999997654
No 486
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=82.34 E-value=20 Score=39.08 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=29.5
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (481)
...++++.+.||+|||.+....++..+........+.+++=|
T Consensus 529 k~~hllv~G~tgsGKSv~lnt~i~Sll~~~~P~ev~~~~iD~ 570 (858)
T COG1674 529 KAGHLLIAGATGSGKSVALNTMILSLLYTHSPEEVRFYIIDP 570 (858)
T ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHHHhCChhHeEEEEEcC
Confidence 347899999999999988776677766665444444444433
No 487
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=82.32 E-value=10 Score=39.33 Aligned_cols=69 Identities=13% Similarity=0.018 Sum_probs=51.9
Q ss_pred cCCCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCc
Q 011605 330 LGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405 (481)
Q Consensus 330 ~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~ 405 (481)
..+.+++|.+++...|.+.++.+..+. ..++.+..+.|+++..+|.... ..+|+++|+. +.|+|.=.-+
T Consensus 142 l~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~~-e~~FDyLrd~ 211 (656)
T PRK12898 142 LAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTNK-ELVFDYLRDR 211 (656)
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECCC-chhhhhcccc
Confidence 356789999999999999888877643 3458899999998876555332 4689999986 6788875433
No 488
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=82.23 E-value=8.6 Score=38.13 Aligned_cols=49 Identities=6% Similarity=-0.195 Sum_probs=30.8
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc
Q 011605 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (481)
.++.++..+..|.=+++.|++|+|||..++-.+....... +..+++++.
T Consensus 184 ~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~---g~~vl~~Sl 232 (434)
T TIGR00665 184 DLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKE---GKPVAFFSL 232 (434)
T ss_pred hhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhC---CCeEEEEeC
Confidence 4456555555555688999999999987654444333221 335777753
No 489
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.00 E-value=7.4 Score=36.67 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=15.2
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
-+++++.+|+|+|||..+
T Consensus 127 ~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLA 144 (386)
T ss_pred CccceecCCCCchHHHHH
Confidence 467999999999999754
No 490
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=81.97 E-value=9.6 Score=35.58 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchhHHHhHH
Q 011605 68 FERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~ 88 (481)
++..+++.+|-|+|||.....
T Consensus 48 EsnsviiigprgsgkT~li~~ 68 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDT 68 (408)
T ss_pred CCCceEEEccCCCCceEeeHH
Confidence 356799999999999975433
No 491
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=81.87 E-value=1.3 Score=35.23 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=13.0
Q ss_pred EEEECCCCchhHHHh
Q 011605 72 LCINSPTGSGKTLSY 86 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~ 86 (481)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999854
No 492
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=81.74 E-value=1.2 Score=38.70 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=16.3
Q ss_pred EEEECCCCchhHHHhHHHHHHHHH
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~ 95 (481)
+++++|||+|||.+. ..++..+.
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhh
Confidence 678999999999864 33444433
No 493
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=81.74 E-value=1.3 Score=37.77 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=21.5
Q ss_pred hhhHHhHHhhhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHh
Q 011605 53 PVQVAVWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (481)
Q Consensus 53 ~~Q~~~~~~~~~--~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~ 97 (481)
..|.+.+...+. .-..++.+++.|+.|+|||.... .++..+...
T Consensus 6 ~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~-~~~~~~~~~ 51 (185)
T PF13191_consen 6 EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLR-ALLDRLAER 51 (185)
T ss_dssp HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHH-HHHHHHHhc
Confidence 344444444442 11224669999999999997532 244444443
No 494
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=81.69 E-value=1.9 Score=42.38 Aligned_cols=44 Identities=25% Similarity=0.340 Sum_probs=30.5
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (481)
.+++++.|+||+|||.. +..++..+... +.+++|+=|.-+....
T Consensus 42 ~~h~~i~g~tGsGKt~~-i~~l~~~~~~~---~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQ-IRELLASIRAR---GDRAIIYDPNGGFVSK 85 (410)
T ss_pred hccEEEEcCCCCCHHHH-HHHHHHHHHhc---CCCEEEEeCCcchhHh
Confidence 57899999999999986 33344444432 3468888888766543
No 495
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=81.67 E-value=2.3 Score=37.72 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=16.6
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 011605 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~ 88 (481)
+..+++.|++|+|||..+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56799999999999986543
No 496
>PRK06321 replicative DNA helicase; Provisional
Probab=81.60 E-value=21 Score=35.75 Aligned_cols=48 Identities=13% Similarity=-0.018 Sum_probs=28.5
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
.++.+...+..|.=+++.|.+|.|||..++- +...+... .+..+++++
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafal~-ia~~~a~~--~g~~v~~fS 262 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALALN-IAENFCFQ--NRLPVGIFS 262 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHHHH-HHHHHHHh--cCCeEEEEe
Confidence 4466565444444478899999999986554 33333221 133566665
No 497
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=81.50 E-value=7 Score=36.71 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=15.6
Q ss_pred CCEEEECCCCchhHHHhHH
Q 011605 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~ 88 (481)
...++.||.|+||+..+..
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~ 45 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALC 45 (314)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999986643
No 498
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=81.29 E-value=16 Score=37.23 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=38.4
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.+..+..-|=-.|||.. +.|++..+... ..+.++.|++..+..++-...++...
T Consensus 202 QkaTVFLVPRRHGKTWf-~VpiIsllL~s-~~gI~IGYvAHqKhvs~~Vf~EI~~~ 255 (668)
T PHA03372 202 QKATVFLVPRRHGKTWF-IIPIISFLLKN-IIGISIGYVAHQKHVSQFVLKEVEFR 255 (668)
T ss_pred ccceEEEecccCCceeh-HHHHHHHHHHh-hcCceEEEEeeHHHHHHHHHHHHHHH
Confidence 44556667888999974 45666666664 57789999998887777666665433
No 499
>PRK08506 replicative DNA helicase; Provisional
Probab=81.26 E-value=9.2 Score=38.31 Aligned_cols=59 Identities=12% Similarity=-0.132 Sum_probs=35.3
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHH
Q 011605 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (481)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (481)
.++.+...+..|.=+++.|.||.|||..++-.+...+. .+.+++|++.- .-..|+...+
T Consensus 181 ~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~----~g~~V~~fSlE-Ms~~ql~~Rl 239 (472)
T PRK08506 181 ELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALN----QDKGVAFFSLE-MPAEQLMLRM 239 (472)
T ss_pred HHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHh----cCCcEEEEeCc-CCHHHHHHHH
Confidence 44555555555555788999999999876654544332 23367777533 3344444444
No 500
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=81.25 E-value=3.9 Score=41.52 Aligned_cols=62 Identities=18% Similarity=0.074 Sum_probs=39.3
Q ss_pred hHHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 58 ~~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.++.++. .+..+..+++.+++|+|||..++..+...+.. +.+++|++-. .-.+++.+.+..+
T Consensus 261 ~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~----g~~~~yis~e-~~~~~i~~~~~~~ 323 (509)
T PRK09302 261 DLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRR----GERCLLFAFE-ESRAQLIRNARSW 323 (509)
T ss_pred HHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhC----CCcEEEEEec-CCHHHHHHHHHHc
Confidence 3455554 34456668899999999998766555444333 3478888644 3355566666555
Done!