Query 011605
Match_columns 481
No_of_seqs 148 out of 1746
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 11:36:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 7.3E-54 2.5E-58 421.3 39.5 379 16-470 50-433 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 4.8E-52 1.7E-56 408.6 37.7 388 16-476 9-414 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1.3E-51 4.4E-56 404.5 36.4 370 21-467 36-405 (410)
4 1s2m_A Putative ATP-dependent 100.0 7.4E-51 2.5E-55 397.8 38.0 373 21-472 20-392 (400)
5 3eiq_A Eukaryotic initiation f 100.0 4.5E-51 1.6E-55 401.3 34.7 367 34-470 46-412 (414)
6 1xti_A Probable ATP-dependent 100.0 1.6E-49 5.5E-54 387.3 39.8 370 22-467 8-380 (391)
7 3fht_A ATP-dependent RNA helic 100.0 2.3E-49 8E-54 388.9 34.0 364 20-457 23-395 (412)
8 3pey_A ATP-dependent RNA helic 100.0 3.8E-49 1.3E-53 385.2 34.7 360 20-455 3-370 (395)
9 1fuu_A Yeast initiation factor 100.0 1E-50 3.5E-55 396.2 19.1 376 19-472 18-393 (394)
10 1hv8_A Putative ATP-dependent 100.0 2.8E-48 9.4E-53 375.3 34.9 356 20-456 4-359 (367)
11 3sqw_A ATP-dependent RNA helic 100.0 8E-48 2.7E-52 392.4 34.6 369 34-455 27-411 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 3.7E-47 1.3E-51 387.6 36.1 369 34-455 78-462 (563)
13 2z0m_A 337AA long hypothetical 100.0 7.5E-47 2.6E-51 360.8 33.1 335 35-455 1-335 (337)
14 3fmp_B ATP-dependent RNA helic 100.0 3.8E-49 1.3E-53 394.1 16.3 361 21-455 91-460 (479)
15 1oyw_A RECQ helicase, ATP-depe 100.0 2.9E-46 9.9E-51 373.8 29.9 348 22-453 2-354 (523)
16 2v1x_A ATP-dependent DNA helic 100.0 6.7E-46 2.3E-50 374.6 29.2 343 35-451 28-383 (591)
17 3fho_A ATP-dependent RNA helic 100.0 3.5E-47 1.2E-51 380.8 19.0 354 34-457 125-486 (508)
18 3oiy_A Reverse gyrase helicase 100.0 4.1E-43 1.4E-47 344.1 28.0 341 38-455 9-376 (414)
19 2zj8_A DNA helicase, putative 100.0 1.8E-41 6.2E-46 354.0 29.4 341 23-444 2-389 (720)
20 2va8_A SSO2462, SKI2-type heli 100.0 6.8E-41 2.3E-45 349.9 32.6 342 20-443 6-409 (715)
21 2p6r_A Afuhel308 helicase; pro 100.0 1.9E-41 6.5E-46 352.9 25.0 336 35-444 10-390 (702)
22 4a2p_A RIG-I, retinoic acid in 100.0 5.2E-41 1.8E-45 342.5 26.1 338 46-445 3-511 (556)
23 2ykg_A Probable ATP-dependent 100.0 7.8E-41 2.7E-45 349.6 24.0 349 40-448 3-522 (696)
24 3l9o_A ATP-dependent RNA helic 100.0 7E-40 2.4E-44 350.9 28.0 338 35-451 169-607 (1108)
25 3tbk_A RIG-I helicase domain; 100.0 4.1E-40 1.4E-44 335.8 23.6 339 50-448 4-513 (555)
26 1wp9_A ATP-dependent RNA helic 100.0 7.2E-39 2.5E-43 321.5 32.0 324 50-446 9-479 (494)
27 4f92_B U5 small nuclear ribonu 100.0 3E-40 1E-44 365.4 23.5 380 32-479 63-507 (1724)
28 4a2q_A RIG-I, retinoic acid in 100.0 1.3E-39 4.4E-44 343.3 26.6 341 45-445 243-752 (797)
29 4f92_B U5 small nuclear ribonu 100.0 3.9E-39 1.3E-43 356.5 30.6 358 34-452 910-1318(1724)
30 2xgj_A ATP-dependent RNA helic 100.0 9.3E-39 3.2E-43 339.4 29.4 328 44-451 81-509 (1010)
31 1gm5_A RECG; helicase, replica 100.0 6.3E-39 2.2E-43 330.2 26.2 328 36-441 355-696 (780)
32 1gku_B Reverse gyrase, TOP-RG; 100.0 4.3E-39 1.5E-43 345.1 25.1 338 41-456 48-468 (1054)
33 4ddu_A Reverse gyrase; topoiso 100.0 3.5E-38 1.2E-42 337.7 29.8 336 45-455 74-503 (1104)
34 4a2w_A RIG-I, retinoic acid in 100.0 1.4E-38 4.7E-43 338.6 24.2 340 45-445 243-752 (936)
35 4a4z_A Antiviral helicase SKI2 100.0 1.3E-37 4.4E-42 330.7 27.4 329 45-452 35-504 (997)
36 2eyq_A TRCF, transcription-rep 100.0 5.1E-37 1.7E-41 330.9 30.6 329 35-442 588-922 (1151)
37 4gl2_A Interferon-induced heli 100.0 8.5E-38 2.9E-42 326.8 21.5 339 50-442 7-519 (699)
38 2fwr_A DNA repair protein RAD2 100.0 2.2E-37 7.5E-42 308.6 22.1 289 50-438 93-448 (472)
39 2oca_A DAR protein, ATP-depend 100.0 4.1E-37 1.4E-41 309.6 22.4 311 49-440 112-453 (510)
40 1tf5_A Preprotein translocase 100.0 3.5E-36 1.2E-40 303.6 26.8 369 45-455 79-565 (844)
41 2xau_A PRE-mRNA-splicing facto 100.0 2.5E-35 8.7E-40 305.7 21.3 329 35-444 79-445 (773)
42 1nkt_A Preprotein translocase 100.0 9E-34 3.1E-38 285.5 30.9 369 45-455 107-637 (922)
43 2jlq_A Serine protease subunit 100.0 3.1E-35 1.1E-39 289.4 20.0 288 47-441 1-310 (451)
44 2fsf_A Preprotein translocase 100.0 1.8E-34 6.1E-39 290.3 23.8 357 46-444 71-585 (853)
45 2whx_A Serine protease/ntpase/ 100.0 4.1E-35 1.4E-39 296.8 18.9 313 35-454 157-493 (618)
46 1yks_A Genome polyprotein [con 100.0 6.8E-36 2.3E-40 292.7 11.9 279 67-454 6-314 (440)
47 3dmq_A RNA polymerase-associat 100.0 6.6E-34 2.3E-38 303.0 23.9 136 316-454 487-625 (968)
48 2wv9_A Flavivirin protease NS2 100.0 2.2E-34 7.6E-39 293.1 16.7 309 42-452 202-546 (673)
49 3h1t_A Type I site-specific re 100.0 3.1E-34 1.1E-38 293.3 17.2 318 50-441 178-558 (590)
50 2z83_A Helicase/nucleoside tri 100.0 1.5E-33 5.1E-38 277.8 21.3 268 68-442 20-313 (459)
51 3o8b_A HCV NS3 protease/helica 100.0 2.3E-33 7.9E-38 281.0 18.7 280 51-446 218-518 (666)
52 2v6i_A RNA helicase; membrane, 100.0 6.2E-33 2.1E-37 271.1 20.8 269 69-439 2-288 (431)
53 1z63_A Helicase of the SNF2/RA 100.0 1E-32 3.4E-37 277.0 21.7 312 49-439 36-448 (500)
54 3rc3_A ATP-dependent RNA helic 100.0 2.7E-31 9.3E-36 269.5 24.1 283 68-453 154-455 (677)
55 3mwy_W Chromo domain-containin 100.0 1.1E-30 3.6E-35 274.5 25.1 381 49-454 235-698 (800)
56 1z3i_X Similar to RAD54-like; 100.0 6E-30 2.1E-34 262.2 29.3 123 317-442 398-528 (644)
57 3fe2_A Probable ATP-dependent 100.0 3.5E-30 1.2E-34 232.7 20.1 212 16-297 23-238 (242)
58 3ber_A Probable ATP-dependent 100.0 3.2E-29 1.1E-33 226.9 21.6 205 21-295 42-246 (249)
59 2pl3_A Probable ATP-dependent 100.0 6.2E-29 2.1E-33 223.9 21.4 207 19-295 22-231 (236)
60 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 8.9E-29 3E-33 261.4 25.6 347 37-456 251-721 (1038)
61 2oxc_A Probable ATP-dependent 100.0 4.1E-29 1.4E-33 223.9 19.6 208 16-295 18-227 (230)
62 1vec_A ATP-dependent RNA helic 100.0 6.1E-29 2.1E-33 219.2 20.1 202 22-294 3-205 (206)
63 3jux_A Protein translocase sub 100.0 9.5E-28 3.3E-32 236.7 30.2 385 46-455 72-607 (822)
64 3ly5_A ATP-dependent RNA helic 100.0 5.1E-29 1.7E-33 227.3 19.3 206 23-291 48-257 (262)
65 3bor_A Human initiation factor 100.0 4E-29 1.4E-33 225.0 18.3 210 16-295 24-233 (237)
66 1t6n_A Probable ATP-dependent 100.0 2.5E-28 8.7E-33 217.4 23.0 206 19-294 11-218 (220)
67 3iuy_A Probable ATP-dependent 100.0 4.8E-29 1.7E-33 223.3 18.3 209 16-294 13-226 (228)
68 1wrb_A DJVLGB; RNA helicase, D 100.0 3.6E-29 1.2E-33 227.9 17.7 213 20-298 21-241 (253)
69 1q0u_A Bstdead; DEAD protein, 100.0 6.1E-29 2.1E-33 221.2 17.9 205 22-297 4-212 (219)
70 3dkp_A Probable ATP-dependent 100.0 2.6E-29 8.9E-34 227.7 15.7 220 16-298 19-242 (245)
71 1qde_A EIF4A, translation init 100.0 9.5E-29 3.2E-33 220.9 18.7 208 17-296 9-216 (224)
72 3fmo_B ATP-dependent RNA helic 100.0 8.2E-29 2.8E-33 230.0 18.5 205 21-296 91-297 (300)
73 2gxq_A Heat resistant RNA depe 100.0 6.5E-28 2.2E-32 212.8 19.6 201 23-295 2-204 (207)
74 1c4o_A DNA nucleotide excision 99.9 8.1E-24 2.8E-28 216.5 30.8 111 331-445 438-553 (664)
75 2hjv_A ATP-dependent RNA helic 99.9 6.5E-25 2.2E-29 185.0 18.1 148 306-456 9-156 (163)
76 1fuk_A Eukaryotic initiation f 99.9 3.6E-25 1.2E-29 187.1 14.7 155 310-470 7-162 (165)
77 2jgn_A DBX, DDX3, ATP-dependen 99.9 5.5E-25 1.9E-29 189.0 15.2 161 305-471 18-179 (185)
78 1t5i_A C_terminal domain of A 99.9 1.3E-24 4.3E-29 184.6 16.2 156 306-467 5-161 (172)
79 2ipc_A Preprotein translocase 99.9 1.9E-23 6.5E-28 210.1 27.0 131 46-210 76-215 (997)
80 2d7d_A Uvrabc system protein B 99.9 7.1E-23 2.4E-27 209.4 30.6 111 331-445 444-559 (661)
81 2p6n_A ATP-dependent RNA helic 99.9 1.7E-24 5.7E-29 186.7 15.5 175 287-469 11-186 (191)
82 3eaq_A Heat resistant RNA depe 99.9 5.1E-24 1.8E-28 187.3 18.6 146 308-456 7-152 (212)
83 2rb4_A ATP-dependent RNA helic 99.9 3.3E-24 1.1E-28 183.0 16.7 148 306-456 7-161 (175)
84 2vl7_A XPD; helicase, unknown 99.9 1.8E-23 6.1E-28 209.8 18.2 153 46-210 4-188 (540)
85 3i32_A Heat resistant RNA depe 99.9 5.8E-23 2E-27 188.9 17.1 146 308-456 4-149 (300)
86 2yjt_D ATP-dependent RNA helic 99.8 1.5E-24 5E-29 184.2 0.0 141 312-455 9-150 (170)
87 3crv_A XPD/RAD3 related DNA he 99.9 2.3E-21 7.9E-26 195.4 18.5 155 47-211 1-187 (551)
88 4a15_A XPD helicase, ATP-depen 99.8 2.8E-20 9.6E-25 188.7 19.5 89 50-141 3-91 (620)
89 3b6e_A Interferon-induced heli 99.8 8.2E-21 2.8E-25 168.3 12.6 144 46-215 29-180 (216)
90 3llm_A ATP-dependent RNA helic 99.8 4.9E-19 1.7E-23 158.6 13.6 180 11-224 1-205 (235)
91 1rif_A DAR protein, DNA helica 99.8 4.8E-19 1.6E-23 163.4 10.2 128 50-212 113-240 (282)
92 1z5z_A Helicase of the SNF2/RA 99.7 9.4E-18 3.2E-22 152.4 12.8 125 315-442 93-224 (271)
93 2fz4_A DNA repair protein RAD2 99.7 1.3E-17 4.3E-22 149.1 12.5 116 50-214 93-209 (237)
94 4b3f_X DNA-binding protein smu 98.3 2.5E-06 8.4E-11 87.5 10.0 68 49-124 188-256 (646)
95 1w36_D RECD, exodeoxyribonucle 98.2 2.6E-06 8.9E-11 86.3 9.3 86 38-129 136-224 (608)
96 2gk6_A Regulator of nonsense t 98.1 2.9E-05 9.8E-10 79.1 13.3 70 48-124 178-247 (624)
97 2xzl_A ATP-dependent helicase 98.0 7.6E-05 2.6E-09 77.8 14.5 70 48-124 358-427 (802)
98 3upu_A ATP-dependent DNA helic 98.0 1.1E-05 3.8E-10 79.1 7.3 74 45-121 20-94 (459)
99 2wjy_A Regulator of nonsense t 97.9 7.1E-05 2.4E-09 77.9 13.4 70 48-124 354-423 (800)
100 3hgt_A HDA1 complex subunit 3; 97.9 0.00021 7.1E-09 65.0 13.5 127 315-449 106-244 (328)
101 3e1s_A Exodeoxyribonuclease V, 97.7 9.3E-05 3.2E-09 74.2 9.5 62 50-119 189-250 (574)
102 3lfu_A DNA helicase II; SF1 he 97.0 0.0011 3.7E-08 68.1 8.0 71 49-125 8-78 (647)
103 1uaa_A REP helicase, protein ( 96.9 0.0021 7.1E-08 66.2 8.2 71 50-126 2-72 (673)
104 3vkw_A Replicase large subunit 96.7 0.0019 6.3E-08 61.7 6.0 42 72-122 164-205 (446)
105 1pjr_A PCRA; DNA repair, DNA r 96.7 0.0038 1.3E-07 64.7 8.6 71 49-125 10-80 (724)
106 2o0j_A Terminase, DNA packagin 96.6 0.0055 1.9E-07 57.7 8.1 72 50-127 163-234 (385)
107 1w4r_A Thymidine kinase; type 96.4 0.0052 1.8E-07 51.5 6.3 37 70-110 21-57 (195)
108 1xx6_A Thymidine kinase; NESG, 96.4 0.0099 3.4E-07 50.1 8.1 38 70-111 9-46 (191)
109 3e2i_A Thymidine kinase; Zn-bi 96.4 0.0061 2.1E-07 51.9 6.5 37 72-112 31-67 (219)
110 3ec2_A DNA replication protein 96.4 0.013 4.4E-07 49.0 8.5 19 69-87 38-56 (180)
111 2j9r_A Thymidine kinase; TK1, 96.2 0.0087 3E-07 51.0 6.4 37 72-112 31-67 (214)
112 2b8t_A Thymidine kinase; deoxy 96.1 0.0093 3.2E-07 51.6 6.3 39 69-111 12-50 (223)
113 3cpe_A Terminase, DNA packagin 96.0 0.0062 2.1E-07 61.5 5.3 73 50-128 163-235 (592)
114 2orw_A Thymidine kinase; TMTK, 96.0 0.015 5.3E-07 48.7 6.9 39 69-111 3-41 (184)
115 3u4q_A ATP-dependent helicase/ 95.6 0.019 6.6E-07 63.2 7.4 70 50-125 10-81 (1232)
116 2orv_A Thymidine kinase; TP4A 95.5 0.016 5.6E-07 49.8 5.4 40 69-112 19-58 (234)
117 3te6_A Regulatory protein SIR3 95.5 0.069 2.3E-06 48.8 9.7 27 68-95 44-70 (318)
118 1a5t_A Delta prime, HOLB; zinc 95.4 0.03 1E-06 52.0 7.4 38 51-88 3-43 (334)
119 1l8q_A Chromosomal replication 95.4 0.14 4.9E-06 47.1 11.8 36 69-108 37-72 (324)
120 2w58_A DNAI, primosome compone 95.0 0.028 9.5E-07 47.9 5.2 18 70-87 55-72 (202)
121 2z4s_A Chromosomal replication 94.4 0.32 1.1E-05 46.9 11.8 39 69-109 130-168 (440)
122 2chg_A Replication factor C sm 94.3 0.75 2.6E-05 39.1 13.0 17 70-86 39-55 (226)
123 2zpa_A Uncharacterized protein 94.2 0.066 2.3E-06 53.9 6.4 58 50-116 175-232 (671)
124 1gm5_A RECG; helicase, replica 94.2 0.12 4.1E-06 53.6 8.6 81 332-412 417-499 (780)
125 1sxj_D Activator 1 41 kDa subu 93.7 0.18 6.1E-06 47.0 8.3 18 70-87 59-76 (353)
126 2v1u_A Cell division control p 93.5 0.094 3.2E-06 49.5 5.9 19 69-87 44-62 (387)
127 3oiy_A Reverse gyrase helicase 93.1 0.21 7.1E-06 47.8 7.7 82 331-412 63-148 (414)
128 3u61_B DNA polymerase accessor 92.5 0.73 2.5E-05 42.2 10.3 14 197-210 105-118 (324)
129 2qby_A CDC6 homolog 1, cell di 91.7 0.38 1.3E-05 45.2 7.6 19 69-87 45-63 (386)
130 3vfd_A Spastin; ATPase, microt 91.7 0.82 2.8E-05 43.2 9.8 18 69-86 148-165 (389)
131 2gno_A DNA polymerase III, gam 91.4 0.48 1.6E-05 43.1 7.5 18 70-87 19-36 (305)
132 3hjh_A Transcription-repair-co 91.2 1.1 3.6E-05 43.6 10.1 75 321-411 372-446 (483)
133 3kl4_A SRP54, signal recogniti 91.1 0.97 3.3E-05 43.1 9.5 34 71-108 99-132 (433)
134 2qby_B CDC6 homolog 3, cell di 90.9 0.5 1.7E-05 44.5 7.5 19 69-87 45-63 (384)
135 2hjv_A ATP-dependent RNA helic 90.5 4.6 0.00016 32.4 12.1 79 100-206 34-112 (163)
136 4ddu_A Reverse gyrase; topoiso 90.2 0.48 1.6E-05 51.3 7.3 81 331-411 120-204 (1104)
137 2zr9_A Protein RECA, recombina 90.0 0.23 8E-06 46.1 4.2 49 58-110 48-98 (349)
138 3pfi_A Holliday junction ATP-d 90.0 1.4 4.9E-05 40.5 9.6 18 69-86 55-72 (338)
139 1t6n_A Probable ATP-dependent 90.0 1.2 4.1E-05 38.0 8.6 118 333-453 83-210 (220)
140 2eyq_A TRCF, transcription-rep 89.8 1.1 3.8E-05 48.8 9.8 79 331-409 651-731 (1151)
141 3dm5_A SRP54, signal recogniti 89.6 0.8 2.7E-05 43.8 7.5 58 71-135 102-161 (443)
142 1iqp_A RFCS; clamp loader, ext 89.2 0.55 1.9E-05 42.9 6.1 18 70-87 47-64 (327)
143 1vma_A Cell division protein F 88.7 3.1 0.00011 37.6 10.5 34 71-108 106-139 (306)
144 1tue_A Replication protein E1; 88.7 0.48 1.7E-05 39.9 4.7 47 38-86 29-75 (212)
145 1xp8_A RECA protein, recombina 88.6 0.3 1E-05 45.7 3.8 49 58-110 61-111 (366)
146 1jr3_A DNA polymerase III subu 88.6 0.75 2.6E-05 43.0 6.7 17 71-87 40-56 (373)
147 3ber_A Probable ATP-dependent 88.6 3.3 0.00011 36.2 10.5 118 331-455 110-239 (249)
148 3hr8_A Protein RECA; alpha and 88.2 0.31 1.1E-05 45.3 3.6 51 58-112 48-100 (356)
149 1fuk_A Eukaryotic initiation f 88.2 7.2 0.00025 31.3 11.6 78 100-205 29-106 (165)
150 3n70_A Transport activator; si 88.2 0.33 1.1E-05 38.5 3.3 19 68-86 23-41 (145)
151 3io5_A Recombination and repai 88.0 0.35 1.2E-05 43.8 3.6 45 67-114 27-71 (333)
152 3eaq_A Heat resistant RNA depe 87.6 7 0.00024 33.0 11.7 75 101-203 31-105 (212)
153 3cmu_A Protein RECA, recombina 87.5 0.44 1.5E-05 54.2 4.7 52 59-114 1415-1468(2050)
154 2rb4_A ATP-dependent RNA helic 87.4 6.6 0.00023 31.9 11.0 76 100-203 33-108 (175)
155 2jgn_A DBX, DDX3, ATP-dependen 87.3 3.9 0.00013 33.8 9.6 77 100-204 45-121 (185)
156 1t5i_A C_terminal domain of A 87.0 9.3 0.00032 30.9 11.7 79 100-206 30-108 (172)
157 2p6n_A ATP-dependent RNA helic 86.6 5.5 0.00019 33.0 10.2 77 101-205 54-130 (191)
158 2gxq_A Heat resistant RNA depe 86.0 3.8 0.00013 34.3 9.1 119 332-455 72-197 (207)
159 2zts_A Putative uncharacterize 85.6 0.74 2.5E-05 40.2 4.5 60 60-123 20-80 (251)
160 3co5_A Putative two-component 85.4 0.29 1E-05 38.7 1.6 17 69-85 27-43 (143)
161 2w0m_A SSO2452; RECA, SSPF, un 85.4 1.1 3.8E-05 38.5 5.5 47 58-108 11-58 (235)
162 2qgz_A Helicase loader, putati 85.3 0.77 2.6E-05 41.8 4.5 19 69-87 152-170 (308)
163 3iuy_A Probable ATP-dependent 85.0 2.3 7.8E-05 36.5 7.3 77 331-411 93-175 (228)
164 2l82_A Designed protein OR32; 84.0 10 0.00034 27.4 9.4 123 335-465 5-136 (162)
165 2v1x_A ATP-dependent DNA helic 83.7 2.4 8.2E-05 42.5 7.6 59 332-393 84-144 (591)
166 2p65_A Hypothetical protein PF 83.6 1.4 4.7E-05 36.1 5.1 19 69-87 43-61 (187)
167 1vec_A ATP-dependent RNA helic 83.6 4.8 0.00016 33.6 8.6 119 332-454 71-198 (206)
168 3syl_A Protein CBBX; photosynt 83.5 1.2 3.9E-05 40.5 4.9 19 69-87 67-85 (309)
169 1oyw_A RECQ helicase, ATP-depe 83.4 2.3 8E-05 41.9 7.3 59 332-393 65-123 (523)
170 2oxc_A Probable ATP-dependent 83.3 1.7 5.7E-05 37.4 5.7 74 332-410 92-173 (230)
171 1u0j_A DNA replication protein 83.3 2 6.7E-05 37.9 6.0 47 38-87 74-122 (267)
172 3u4q_B ATP-dependent helicase/ 83.0 1.7 5.8E-05 47.7 6.7 48 73-122 5-52 (1166)
173 2cvh_A DNA repair and recombin 82.9 1.3 4.3E-05 37.8 4.7 44 58-108 8-52 (220)
174 3fe2_A Probable ATP-dependent 82.7 5.4 0.00018 34.5 8.8 117 332-456 102-230 (242)
175 2dr3_A UPF0273 protein PH0284; 82.2 1.2 4.2E-05 38.6 4.4 50 68-122 22-71 (247)
176 3bh0_A DNAB-like replicative h 82.2 1.7 5.7E-05 39.7 5.4 62 57-123 56-117 (315)
177 2kjq_A DNAA-related protein; s 82.1 1.4 4.7E-05 35.1 4.2 19 68-86 35-53 (149)
178 4b4t_J 26S protease regulatory 81.9 0.67 2.3E-05 43.6 2.6 18 69-86 182-199 (405)
179 2eyu_A Twitching motility prot 81.8 0.87 3E-05 40.3 3.2 19 68-86 24-42 (261)
180 3bor_A Human initiation factor 81.8 2.7 9.1E-05 36.4 6.4 118 331-455 97-226 (237)
181 1jbk_A CLPB protein; beta barr 81.6 1.4 4.9E-05 36.2 4.4 19 69-87 43-61 (195)
182 1w36_B RECB, exodeoxyribonucle 81.5 2.2 7.5E-05 46.8 6.9 57 70-126 17-81 (1180)
183 4b4t_M 26S protease regulatory 81.2 0.74 2.5E-05 43.9 2.7 18 69-86 215-232 (434)
184 2r44_A Uncharacterized protein 80.5 0.48 1.6E-05 43.7 1.1 32 55-86 32-63 (331)
185 2bjv_A PSP operon transcriptio 80.4 1.9 6.4E-05 38.1 5.0 18 69-86 29-46 (265)
186 3bos_A Putative DNA replicatio 80.2 1.9 6.4E-05 37.2 4.8 19 69-87 52-70 (242)
187 1wrb_A DJVLGB; RNA helicase, D 80.1 15 0.00051 31.8 10.8 120 333-456 101-232 (253)
188 3i5x_A ATP-dependent RNA helic 79.7 27 0.00091 34.5 13.7 83 99-206 337-419 (563)
189 2oap_1 GSPE-2, type II secreti 79.4 3.3 0.00011 40.6 6.7 19 68-86 259-277 (511)
190 1xti_A Probable ATP-dependent 78.9 8.2 0.00028 35.9 9.3 77 332-411 76-160 (391)
191 1e9r_A Conjugal transfer prote 78.8 1.9 6.4E-05 41.4 4.8 43 69-115 53-95 (437)
192 2i4i_A ATP-dependent RNA helic 78.6 17 0.00058 34.1 11.5 76 100-203 275-350 (417)
193 3eie_A Vacuolar protein sortin 78.3 1.4 4.8E-05 40.3 3.5 18 69-86 51-68 (322)
194 3ly5_A ATP-dependent RNA helic 78.3 8.1 0.00028 33.9 8.5 76 332-411 126-209 (262)
195 3i32_A Heat resistant RNA depe 78.2 17 0.00057 32.7 10.5 75 101-203 28-102 (300)
196 2pl3_A Probable ATP-dependent 78.1 9.9 0.00034 32.5 8.9 119 331-454 96-223 (236)
197 4ag6_A VIRB4 ATPase, type IV s 78.1 2.2 7.5E-05 40.3 4.9 41 68-112 34-74 (392)
198 4b4t_I 26S protease regulatory 78.0 1.2 4E-05 42.3 2.8 18 69-86 216-233 (437)
199 3bgw_A DNAB-like replicative h 78.0 2.6 8.8E-05 40.5 5.4 49 58-110 186-234 (444)
200 3sqw_A ATP-dependent RNA helic 77.7 24 0.00081 35.1 12.6 83 100-207 287-369 (579)
201 3fmo_B ATP-dependent RNA helic 77.6 3.8 0.00013 37.0 6.2 117 332-455 162-289 (300)
202 2c9o_A RUVB-like 1; hexameric 77.0 2.1 7.2E-05 41.4 4.5 20 68-87 62-81 (456)
203 1g5t_A COB(I)alamin adenosyltr 77.0 3 0.0001 34.8 4.8 36 69-108 28-63 (196)
204 3hws_A ATP-dependent CLP prote 76.9 1.2 4E-05 41.7 2.6 18 69-86 51-68 (363)
205 2qmh_A HPR kinase/phosphorylas 76.7 1.3 4.4E-05 37.2 2.4 18 69-86 34-51 (205)
206 2iut_A DNA translocase FTSK; n 76.3 2.5 8.7E-05 41.7 4.8 43 69-111 214-256 (574)
207 2d7d_A Uvrabc system protein B 76.2 15 0.0005 37.4 10.6 82 100-209 444-525 (661)
208 2ius_A DNA translocase FTSK; n 76.2 2.6 8.8E-05 41.2 4.8 43 68-110 166-208 (512)
209 3nbx_X ATPase RAVA; AAA+ ATPas 76.0 0.56 1.9E-05 45.9 0.1 31 56-86 28-58 (500)
210 2qor_A Guanylate kinase; phosp 76.0 2 6.7E-05 36.2 3.6 22 65-86 8-29 (204)
211 3cf0_A Transitional endoplasmi 75.6 1.8 6.1E-05 39.2 3.4 19 68-86 48-66 (301)
212 1u94_A RECA protein, recombina 75.5 3.2 0.00011 38.5 5.1 49 58-110 50-100 (356)
213 4a1f_A DNAB helicase, replicat 75.4 3.6 0.00012 37.8 5.3 48 58-109 35-82 (338)
214 4b4t_K 26S protease regulatory 75.2 2.3 7.9E-05 40.5 4.1 18 69-86 206-223 (428)
215 3h4m_A Proteasome-activating n 75.0 1.9 6.5E-05 38.5 3.4 18 69-86 51-68 (285)
216 3a8t_A Adenylate isopentenyltr 74.8 1.6 5.5E-05 40.0 2.8 19 70-88 41-59 (339)
217 3uk6_A RUVB-like 2; hexameric 74.7 2.4 8.2E-05 39.4 4.1 19 69-87 70-88 (368)
218 3vaa_A Shikimate kinase, SK; s 74.6 1.8 6.2E-05 36.2 3.0 19 69-87 25-43 (199)
219 1kgd_A CASK, peripheral plasma 74.5 2 6.8E-05 35.3 3.2 18 69-86 5-22 (180)
220 1p9r_A General secretion pathw 74.4 2.4 8.2E-05 40.3 4.0 31 54-86 154-184 (418)
221 4b4t_L 26S protease subunit RP 74.4 2.4 8.2E-05 40.4 4.0 18 69-86 215-232 (437)
222 2qz4_A Paraplegin; AAA+, SPG7, 74.1 2.1 7E-05 37.6 3.3 18 69-86 39-56 (262)
223 2r8r_A Sensor protein; KDPD, P 74.0 3.5 0.00012 35.3 4.5 23 71-93 8-30 (228)
224 3trf_A Shikimate kinase, SK; a 73.5 2 6.7E-05 35.4 2.9 19 69-87 5-23 (185)
225 1goj_A Kinesin, kinesin heavy 73.5 1.4 4.8E-05 40.8 2.1 35 52-86 58-98 (355)
226 1cr0_A DNA primase/helicase; R 73.1 7.4 0.00025 34.8 6.9 49 58-109 24-72 (296)
227 3iij_A Coilin-interacting nucl 73.0 2.8 9.6E-05 34.3 3.7 19 69-87 11-29 (180)
228 2ehv_A Hypothetical protein PH 72.8 3.5 0.00012 35.7 4.5 23 66-88 27-49 (251)
229 1ojl_A Transcriptional regulat 72.7 2.4 8.3E-05 38.4 3.5 18 69-86 25-42 (304)
230 1gku_B Reverse gyrase, TOP-RG; 72.7 6 0.00021 42.7 7.1 79 331-411 98-183 (1054)
231 3b9p_A CG5977-PA, isoform A; A 72.6 2 6.9E-05 38.6 2.9 18 69-86 54-71 (297)
232 1lvg_A Guanylate kinase, GMP k 72.5 2.2 7.6E-05 35.7 3.0 18 69-86 4-21 (198)
233 2chq_A Replication factor C sm 72.4 3.6 0.00012 37.2 4.6 18 70-87 39-56 (319)
234 1qde_A EIF4A, translation init 72.4 5.2 0.00018 33.9 5.5 116 331-455 81-208 (224)
235 1kag_A SKI, shikimate kinase I 72.4 2.5 8.7E-05 34.2 3.3 18 69-86 4-21 (173)
236 3exa_A TRNA delta(2)-isopenten 72.3 2 6.8E-05 38.9 2.7 17 71-87 5-21 (322)
237 1ofh_A ATP-dependent HSL prote 72.2 2.3 8E-05 38.3 3.3 18 69-86 50-67 (310)
238 1d2n_A N-ethylmaleimide-sensit 72.1 1.9 6.5E-05 38.2 2.6 19 69-87 64-82 (272)
239 3dc4_A Kinesin-like protein NO 72.1 0.94 3.2E-05 41.7 0.6 36 51-86 71-112 (344)
240 2r2a_A Uncharacterized protein 71.9 1.9 6.5E-05 36.2 2.4 17 72-88 8-24 (199)
241 1zp6_A Hypothetical protein AT 71.9 1.8 6.3E-05 35.8 2.3 19 68-86 8-26 (191)
242 2q6t_A DNAB replication FORK h 71.8 5.4 0.00018 38.3 5.9 50 58-110 189-238 (444)
243 3bfn_A Kinesin-like protein KI 71.8 1.6 5.6E-05 40.8 2.1 36 51-86 75-116 (388)
244 2r6a_A DNAB helicase, replicat 71.8 5.6 0.00019 38.3 6.0 50 58-110 192-241 (454)
245 1xwi_A SKD1 protein; VPS4B, AA 71.7 2.1 7E-05 39.2 2.8 18 69-86 45-62 (322)
246 4a14_A Kinesin, kinesin-like p 71.6 1.3 4.5E-05 40.8 1.4 36 51-86 60-101 (344)
247 3foz_A TRNA delta(2)-isopenten 71.6 2.1 7.2E-05 38.6 2.7 17 71-87 12-28 (316)
248 1c4o_A DNA nucleotide excision 71.6 25 0.00087 35.6 11.1 81 100-208 438-518 (664)
249 3tau_A Guanylate kinase, GMP k 71.4 2.4 8.2E-05 35.8 3.0 18 69-86 8-25 (208)
250 3lw7_A Adenylate kinase relate 71.2 1.7 6E-05 35.1 2.0 15 72-86 4-18 (179)
251 3fht_A ATP-dependent RNA helic 71.1 32 0.0011 32.0 11.2 76 100-203 265-340 (412)
252 1y63_A LMAJ004144AAA protein; 71.0 2.9 0.0001 34.4 3.4 18 69-86 10-27 (184)
253 3t15_A Ribulose bisphosphate c 71.0 2.2 7.5E-05 38.4 2.8 18 70-87 37-54 (293)
254 1njg_A DNA polymerase III subu 71.0 2.7 9.1E-05 36.0 3.3 17 70-86 46-62 (250)
255 1q57_A DNA primase/helicase; d 70.8 3.9 0.00013 40.1 4.7 60 58-121 231-290 (503)
256 3vkg_A Dynein heavy chain, cyt 70.8 4.6 0.00016 48.4 5.9 52 35-87 873-924 (3245)
257 1lv7_A FTSH; alpha/beta domain 70.7 2.3 8E-05 37.2 2.8 18 69-86 45-62 (257)
258 3cmw_A Protein RECA, recombina 70.5 3.7 0.00012 46.2 4.8 50 68-124 1430-1479(1706)
259 1wp9_A ATP-dependent RNA helic 70.5 19 0.00065 34.3 9.7 76 331-411 51-133 (494)
260 3tr0_A Guanylate kinase, GMP k 70.4 2.7 9.4E-05 35.1 3.1 18 69-86 7-24 (205)
261 2ze6_A Isopentenyl transferase 70.3 2.3 8E-05 37.2 2.7 16 72-87 4-19 (253)
262 4b4t_H 26S protease regulatory 70.3 2.3 7.8E-05 40.7 2.8 18 69-86 243-260 (467)
263 1qhx_A CPT, protein (chloramph 70.0 2.2 7.4E-05 34.9 2.3 18 69-86 3-20 (178)
264 2qp9_X Vacuolar protein sortin 69.9 2.6 9E-05 39.1 3.1 19 69-87 84-102 (355)
265 4akg_A Glutathione S-transfera 69.7 3.3 0.00011 48.9 4.4 53 35-88 890-942 (2695)
266 3pey_A ATP-dependent RNA helic 69.5 23 0.0008 32.7 9.8 80 100-207 242-321 (395)
267 2db3_A ATP-dependent RNA helic 69.4 29 0.00099 32.9 10.5 73 103-203 302-374 (434)
268 2j37_W Signal recognition part 69.4 15 0.00052 35.7 8.4 35 71-109 103-137 (504)
269 2j41_A Guanylate kinase; GMP, 69.0 3.1 0.00011 34.9 3.2 18 69-86 6-23 (207)
270 1um8_A ATP-dependent CLP prote 68.7 3 0.0001 39.0 3.3 18 69-86 72-89 (376)
271 2z43_A DNA repair and recombin 68.6 3.8 0.00013 37.4 3.9 52 59-110 96-150 (324)
272 3nwn_A Kinesin-like protein KI 68.1 3.1 0.00011 38.5 3.1 33 54-86 84-122 (359)
273 1s2m_A Putative ATP-dependent 67.9 52 0.0018 30.5 11.9 78 100-205 257-334 (400)
274 3crm_A TRNA delta(2)-isopenten 67.4 2.9 9.8E-05 38.1 2.7 18 70-87 6-23 (323)
275 2gza_A Type IV secretion syste 67.3 2.9 9.9E-05 38.9 2.8 18 68-85 174-191 (361)
276 3f9v_A Minichromosome maintena 67.0 3.8 0.00013 41.0 3.8 15 71-85 329-343 (595)
277 1n0w_A DNA repair protein RAD5 66.8 3.9 0.00013 35.3 3.4 32 59-90 13-45 (243)
278 3kb2_A SPBC2 prophage-derived 66.7 3.2 0.00011 33.5 2.7 16 71-86 3-18 (173)
279 3ney_A 55 kDa erythrocyte memb 66.6 4 0.00014 34.1 3.3 18 69-86 19-36 (197)
280 1bg2_A Kinesin; motor protein, 66.5 4 0.00014 37.2 3.5 35 52-86 55-95 (325)
281 3lre_A Kinesin-like protein KI 66.5 2 6.8E-05 39.8 1.5 35 52-86 83-123 (355)
282 2r62_A Cell division protease 66.4 2.2 7.5E-05 37.7 1.7 18 69-86 44-61 (268)
283 3c8u_A Fructokinase; YP_612366 66.4 4.2 0.00014 34.2 3.5 18 69-86 22-39 (208)
284 2ewv_A Twitching motility prot 66.3 2.9 9.8E-05 39.1 2.6 19 68-86 135-153 (372)
285 2px0_A Flagellar biosynthesis 66.3 5.4 0.00019 35.9 4.3 37 69-108 105-141 (296)
286 1f9v_A Kinesin-like protein KA 66.2 3 0.0001 38.4 2.7 23 64-86 78-102 (347)
287 1ex7_A Guanylate kinase; subst 66.1 3.1 0.00011 34.5 2.4 16 70-85 2-17 (186)
288 1z6g_A Guanylate kinase; struc 66.1 4.1 0.00014 34.7 3.3 19 68-86 22-40 (218)
289 1sxj_C Activator 1 40 kDa subu 66.0 2.3 7.7E-05 39.2 1.8 17 71-87 48-64 (340)
290 2j0s_A ATP-dependent RNA helic 65.9 45 0.0015 31.0 11.1 77 101-205 276-352 (410)
291 3jvv_A Twitching mobility prot 65.6 3 0.0001 38.7 2.5 18 69-86 123-140 (356)
292 3d8b_A Fidgetin-like protein 1 65.6 3.5 0.00012 38.3 3.0 18 69-86 117-134 (357)
293 1ixz_A ATP-dependent metallopr 65.5 4.2 0.00014 35.5 3.4 17 70-86 50-66 (254)
294 1ly1_A Polynucleotide kinase; 65.3 3.6 0.00012 33.5 2.7 16 71-86 4-19 (181)
295 3a00_A Guanylate kinase, GMP k 65.2 4.2 0.00014 33.5 3.1 16 71-86 3-18 (186)
296 3d3q_A TRNA delta(2)-isopenten 65.0 3.9 0.00013 37.5 3.1 17 71-87 9-25 (340)
297 4gp7_A Metallophosphoesterase; 65.0 2.5 8.5E-05 34.4 1.7 18 69-86 9-26 (171)
298 3ice_A Transcription terminati 64.9 8.2 0.00028 36.1 5.2 30 57-87 163-192 (422)
299 2vvg_A Kinesin-2; motor protei 64.8 4.5 0.00015 37.3 3.5 36 51-86 66-107 (350)
300 2pt7_A CAG-ALFA; ATPase, prote 64.8 5.7 0.0002 36.3 4.2 18 68-85 170-187 (330)
301 2h58_A Kinesin-like protein KI 64.7 4.6 0.00016 36.9 3.5 19 68-86 78-98 (330)
302 2y65_A Kinesin, kinesin heavy 64.7 4.5 0.00015 37.5 3.5 36 51-86 61-102 (365)
303 3cm0_A Adenylate kinase; ATP-b 64.6 2.8 9.6E-05 34.4 2.0 19 69-87 4-22 (186)
304 4eun_A Thermoresistant glucoki 64.2 4.1 0.00014 34.0 3.0 18 69-86 29-46 (200)
305 1zuh_A Shikimate kinase; alpha 64.0 3.9 0.00013 32.9 2.7 18 70-87 8-25 (168)
306 2x8a_A Nuclear valosin-contain 63.7 4.7 0.00016 35.8 3.4 17 70-86 45-61 (274)
307 2zfi_A Kinesin-like protein KI 63.7 4.8 0.00016 37.4 3.5 34 53-86 68-107 (366)
308 3t0q_A AGR253WP; kinesin, alph 63.6 4.9 0.00017 37.1 3.5 22 65-86 80-103 (349)
309 4etp_A Kinesin-like protein KA 63.3 5 0.00017 37.8 3.6 19 68-86 138-158 (403)
310 3b6u_A Kinesin-like protein KI 63.3 4.4 0.00015 37.7 3.1 35 52-86 79-119 (372)
311 2v54_A DTMP kinase, thymidylat 63.2 5 0.00017 33.4 3.3 19 69-87 4-22 (204)
312 1c9k_A COBU, adenosylcobinamid 63.0 4.8 0.00016 33.1 3.0 43 72-122 2-44 (180)
313 2v9p_A Replication protein E1; 62.9 5.6 0.00019 35.9 3.7 30 57-86 114-143 (305)
314 2l8b_A Protein TRAI, DNA helic 62.9 13 0.00045 30.4 5.5 58 53-115 37-94 (189)
315 1hv8_A Putative ATP-dependent 62.9 53 0.0018 29.8 10.8 78 100-205 237-314 (367)
316 1gvn_B Zeta; postsegregational 62.7 6.1 0.00021 35.3 3.9 16 71-86 35-50 (287)
317 1t5c_A CENP-E protein, centrom 62.6 4.6 0.00016 37.2 3.1 34 53-86 56-95 (349)
318 4fcw_A Chaperone protein CLPB; 62.5 3.7 0.00013 37.0 2.5 17 71-87 49-65 (311)
319 1s96_A Guanylate kinase, GMP k 62.0 4.8 0.00016 34.3 3.0 19 67-85 14-32 (219)
320 2zan_A Vacuolar protein sortin 62.0 4.1 0.00014 39.1 2.8 18 69-86 167-184 (444)
321 2nr8_A Kinesin-like protein KI 62.0 4.8 0.00016 37.3 3.1 34 53-86 82-121 (358)
322 1v8k_A Kinesin-like protein KI 61.9 4.7 0.00016 38.0 3.1 35 52-86 132-172 (410)
323 4a74_A DNA repair and recombin 61.9 3.8 0.00013 35.0 2.3 29 59-87 14-43 (231)
324 1znw_A Guanylate kinase, GMP k 61.8 4.9 0.00017 33.8 3.0 19 68-86 19-37 (207)
325 1knq_A Gluconate kinase; ALFA/ 61.7 4.1 0.00014 33.1 2.4 18 69-86 8-25 (175)
326 3gbj_A KIF13B protein; kinesin 61.7 4.8 0.00016 37.2 3.1 34 53-86 71-110 (354)
327 3pxg_A Negative regulator of g 61.5 5.7 0.0002 38.4 3.8 19 69-87 201-219 (468)
328 3cmw_A Protein RECA, recombina 61.5 7.9 0.00027 43.6 5.2 49 58-110 21-71 (1706)
329 1v5w_A DMC1, meiotic recombina 61.5 6 0.0002 36.4 3.8 53 59-111 111-166 (343)
330 2heh_A KIF2C protein; kinesin, 61.4 5.1 0.00017 37.4 3.2 35 52-86 112-152 (387)
331 3cf2_A TER ATPase, transitiona 61.3 6.6 0.00023 40.7 4.3 18 69-86 238-255 (806)
332 3u06_A Protein claret segregat 61.2 5.1 0.00018 37.8 3.2 19 68-86 136-156 (412)
333 3k1j_A LON protease, ATP-depen 61.1 3.1 0.0001 41.9 1.8 19 68-86 59-77 (604)
334 1kht_A Adenylate kinase; phosp 61.1 4.9 0.00017 33.0 2.8 19 69-87 3-21 (192)
335 1hqc_A RUVB; extended AAA-ATPa 61.0 3.8 0.00013 37.2 2.4 18 69-86 38-55 (324)
336 2rhm_A Putative kinase; P-loop 61.0 4.4 0.00015 33.4 2.5 19 69-87 5-23 (193)
337 1g8p_A Magnesium-chelatase 38 60.9 2.7 9.2E-05 38.7 1.3 18 69-86 45-62 (350)
338 1x88_A Kinesin-like protein KI 60.8 4.6 0.00016 37.4 2.8 35 52-86 66-106 (359)
339 3t61_A Gluconokinase; PSI-biol 60.8 4.7 0.00016 33.6 2.7 17 70-86 19-35 (202)
340 2i1q_A DNA repair and recombin 60.7 7.2 0.00024 35.5 4.1 33 59-91 87-120 (322)
341 3uie_A Adenylyl-sulfate kinase 60.7 4.4 0.00015 33.8 2.5 19 69-87 25-43 (200)
342 2owm_A Nckin3-434, related to 60.6 5.8 0.0002 37.9 3.5 34 53-86 115-154 (443)
343 3b85_A Phosphate starvation-in 60.6 7 0.00024 33.0 3.7 28 55-86 12-39 (208)
344 3eph_A TRNA isopentenyltransfe 60.6 4 0.00014 38.4 2.3 17 72-88 5-21 (409)
345 3pvs_A Replication-associated 60.6 4.4 0.00015 38.9 2.7 17 70-86 51-67 (447)
346 1in4_A RUVB, holliday junction 60.4 5 0.00017 36.8 3.0 17 70-86 52-68 (334)
347 1iy2_A ATP-dependent metallopr 60.3 5.9 0.0002 35.1 3.4 17 70-86 74-90 (278)
348 2qt1_A Nicotinamide riboside k 59.9 4.6 0.00016 33.9 2.5 18 69-86 21-38 (207)
349 1via_A Shikimate kinase; struc 59.7 5.7 0.00019 32.2 3.0 17 71-87 6-22 (175)
350 2bdt_A BH3686; alpha-beta prot 59.6 5.2 0.00018 32.9 2.8 16 71-86 4-19 (189)
351 2v3c_C SRP54, signal recogniti 59.5 10 0.00035 36.2 5.0 35 70-108 100-134 (432)
352 2iyv_A Shikimate kinase, SK; t 59.4 6.2 0.00021 32.2 3.2 18 70-87 3-20 (184)
353 2wbe_C Bipolar kinesin KRP-130 59.3 5 0.00017 37.4 2.8 35 52-86 78-118 (373)
354 3cob_A Kinesin heavy chain-lik 59.2 4.6 0.00016 37.5 2.5 19 68-86 77-97 (369)
355 3hu3_A Transitional endoplasmi 59.1 4.8 0.00017 39.1 2.8 18 69-86 238-255 (489)
356 3fb4_A Adenylate kinase; psych 58.9 5.3 0.00018 33.7 2.8 17 71-87 2-18 (216)
357 1zd8_A GTP:AMP phosphotransfer 58.8 4.8 0.00017 34.4 2.5 18 69-86 7-24 (227)
358 1zu4_A FTSY; GTPase, signal re 58.7 9.1 0.00031 34.8 4.4 34 71-108 107-140 (320)
359 2rep_A Kinesin-like protein KI 58.6 5.6 0.00019 37.0 3.0 36 51-86 93-133 (376)
360 3foj_A Uncharacterized protein 58.5 9.2 0.00032 27.6 3.7 36 332-370 56-91 (100)
361 1sxj_E Activator 1 40 kDa subu 58.4 8.3 0.00028 35.5 4.2 17 70-86 37-53 (354)
362 3lnc_A Guanylate kinase, GMP k 58.3 4.7 0.00016 34.6 2.3 18 69-86 27-44 (231)
363 3nwj_A ATSK2; P loop, shikimat 58.1 6.6 0.00023 34.2 3.2 19 69-87 48-66 (250)
364 3dl0_A Adenylate kinase; phosp 57.9 5.7 0.00019 33.5 2.8 17 71-87 2-18 (216)
365 1g41_A Heat shock protein HSLU 57.8 6.7 0.00023 37.4 3.5 18 69-86 50-67 (444)
366 1tev_A UMP-CMP kinase; ploop, 57.8 5.8 0.0002 32.7 2.7 18 70-87 4-21 (196)
367 1aky_A Adenylate kinase; ATP:A 57.6 6.3 0.00022 33.4 3.0 19 69-87 4-22 (220)
368 1ye8_A Protein THEP1, hypothet 57.4 6.1 0.00021 32.4 2.7 16 71-86 2-17 (178)
369 3bs4_A Uncharacterized protein 57.4 14 0.00048 32.3 5.2 61 59-124 10-71 (260)
370 3eme_A Rhodanese-like domain p 56.9 9.2 0.00031 27.7 3.4 36 332-370 56-91 (103)
371 1cke_A CK, MSSA, protein (cyti 56.9 6 0.0002 33.7 2.7 18 70-87 6-23 (227)
372 3sr0_A Adenylate kinase; phosp 56.8 6.2 0.00021 33.2 2.8 16 72-87 3-18 (206)
373 1q0u_A Bstdead; DEAD protein, 56.8 5.8 0.0002 33.6 2.7 76 332-411 72-158 (219)
374 1nlf_A Regulatory protein REPA 56.8 3.2 0.00011 36.9 1.0 25 66-90 27-51 (279)
375 3gk5_A Uncharacterized rhodane 56.7 8.7 0.0003 28.3 3.3 38 331-371 54-91 (108)
376 1e6c_A Shikimate kinase; phosp 56.6 6.4 0.00022 31.7 2.8 18 70-87 3-20 (173)
377 3lda_A DNA repair protein RAD5 56.6 7.9 0.00027 36.5 3.7 41 69-109 178-220 (400)
378 2c95_A Adenylate kinase 1; tra 56.6 5.8 0.0002 32.7 2.6 19 69-87 9-27 (196)
379 3b9q_A Chloroplast SRP recepto 56.2 12 0.0004 33.7 4.7 36 69-108 100-135 (302)
380 2i3b_A HCR-ntpase, human cance 56.1 7.6 0.00026 32.2 3.1 17 70-86 2-18 (189)
381 1jjv_A Dephospho-COA kinase; P 56.1 6.3 0.00022 32.9 2.7 15 72-86 5-19 (206)
382 2p5t_B PEZT; postsegregational 56.0 10 0.00034 33.1 4.1 17 70-86 33-49 (253)
383 1sxj_B Activator 1 37 kDa subu 56.0 10 0.00034 34.2 4.3 17 71-87 44-60 (323)
384 1nks_A Adenylate kinase; therm 55.9 5.6 0.00019 32.7 2.3 17 71-87 3-19 (194)
385 2wwf_A Thymidilate kinase, put 55.4 6.7 0.00023 32.9 2.8 19 69-87 10-28 (212)
386 1qf9_A UMP/CMP kinase, protein 55.4 5.9 0.0002 32.5 2.4 17 71-87 8-24 (194)
387 3tif_A Uncharacterized ABC tra 55.4 5.2 0.00018 34.5 2.1 18 68-85 30-47 (235)
388 1f2t_A RAD50 ABC-ATPase; DNA d 55.3 5.5 0.00019 31.5 2.0 15 71-85 25-39 (149)
389 3cf2_A TER ATPase, transitiona 55.3 13 0.00043 38.6 5.1 18 69-86 511-528 (806)
390 1svm_A Large T antigen; AAA+ f 55.2 9.1 0.00031 35.7 3.8 22 65-86 165-186 (377)
391 1fnn_A CDC6P, cell division co 55.2 5.7 0.00019 37.1 2.5 16 71-86 46-61 (389)
392 1zak_A Adenylate kinase; ATP:A 55.1 7.1 0.00024 33.1 2.9 19 69-87 5-23 (222)
393 3iwh_A Rhodanese-like domain p 55.1 10 0.00036 27.6 3.4 36 332-370 56-91 (103)
394 3umf_A Adenylate kinase; rossm 55.0 6.8 0.00023 33.3 2.7 18 70-87 30-47 (217)
395 3cmu_A Protein RECA, recombina 54.9 11 0.00036 43.3 4.9 48 59-110 1069-1118(2050)
396 2cdn_A Adenylate kinase; phosp 54.8 6.9 0.00024 32.6 2.7 18 70-87 21-38 (201)
397 1ak2_A Adenylate kinase isoenz 54.7 7.5 0.00026 33.3 3.0 19 69-87 16-34 (233)
398 2jaq_A Deoxyguanosine kinase; 54.5 6.9 0.00024 32.5 2.7 16 72-87 3-18 (205)
399 1rj9_A FTSY, signal recognitio 54.5 12 0.00042 33.7 4.4 36 69-108 102-137 (304)
400 2bwj_A Adenylate kinase 5; pho 54.4 6.2 0.00021 32.7 2.4 18 69-86 12-29 (199)
401 3tqf_A HPR(Ser) kinase; transf 54.4 5.9 0.0002 32.3 2.0 19 69-87 16-34 (181)
402 1tf7_A KAIC; homohexamer, hexa 54.4 11 0.00038 37.0 4.5 48 58-108 27-75 (525)
403 1tf5_A Preprotein translocase 54.2 33 0.0011 35.5 7.9 76 328-409 120-209 (844)
404 1sxj_A Activator 1 95 kDa subu 54.2 6.6 0.00022 38.6 2.8 18 70-87 78-95 (516)
405 2pez_A Bifunctional 3'-phospho 53.8 6.8 0.00023 31.8 2.5 19 69-87 5-23 (179)
406 1ukz_A Uridylate kinase; trans 53.7 7.4 0.00025 32.4 2.8 16 71-86 17-32 (203)
407 2ce7_A Cell division protein F 53.7 6.6 0.00022 38.0 2.7 18 69-86 49-66 (476)
408 2fsf_A Preprotein translocase 53.5 29 0.00099 35.9 7.4 60 329-394 112-172 (853)
409 1fuu_A Yeast initiation factor 53.4 22 0.00076 32.9 6.4 75 331-410 88-169 (394)
410 4gl2_A Interferon-induced heli 53.4 3.4 0.00012 42.3 0.7 75 333-411 57-144 (699)
411 1nij_A Hypothetical protein YJ 53.3 11 0.00037 34.3 4.0 15 71-85 6-20 (318)
412 2pt5_A Shikimate kinase, SK; a 53.2 7.8 0.00027 31.0 2.7 16 71-86 2-17 (168)
413 3b6e_A Interferon-induced heli 53.0 13 0.00044 31.0 4.2 76 332-411 82-170 (216)
414 2pbr_A DTMP kinase, thymidylat 52.7 7.8 0.00027 31.8 2.7 16 72-87 3-18 (195)
415 2p6r_A Afuhel308 helicase; pro 52.6 17 0.00059 37.1 5.8 91 331-428 67-168 (702)
416 3asz_A Uridine kinase; cytidin 52.5 6.4 0.00022 33.1 2.2 18 69-86 6-23 (211)
417 2if2_A Dephospho-COA kinase; a 52.5 6.9 0.00024 32.6 2.4 16 71-86 3-18 (204)
418 2z0h_A DTMP kinase, thymidylat 52.4 8 0.00027 31.9 2.8 16 72-87 3-18 (197)
419 4e22_A Cytidylate kinase; P-lo 52.4 8.3 0.00028 33.6 2.9 18 69-86 27-44 (252)
420 2cbz_A Multidrug resistance-as 52.3 6.3 0.00021 34.1 2.1 18 68-85 30-47 (237)
421 2yvu_A Probable adenylyl-sulfa 51.9 7.6 0.00026 31.8 2.5 19 69-87 13-31 (186)
422 1nn5_A Similar to deoxythymidy 51.9 8.3 0.00028 32.3 2.8 19 69-87 9-27 (215)
423 3a4m_A L-seryl-tRNA(SEC) kinas 51.8 6.3 0.00021 34.6 2.0 18 70-87 5-22 (260)
424 2plr_A DTMP kinase, probable t 51.8 8.1 0.00028 32.3 2.7 19 69-87 4-22 (213)
425 1htw_A HI0065; nucleotide-bind 51.7 9.2 0.00032 30.6 2.9 18 68-85 32-49 (158)
426 3pxi_A Negative regulator of g 51.5 9.9 0.00034 39.4 3.8 19 69-87 201-219 (758)
427 2grj_A Dephospho-COA kinase; T 51.4 8.7 0.0003 31.9 2.8 17 71-87 14-30 (192)
428 2vhj_A Ntpase P4, P4; non- hyd 51.2 8.1 0.00028 35.1 2.7 21 69-89 123-143 (331)
429 3eiq_A Eukaryotic initiation f 51.1 75 0.0026 29.4 9.8 78 331-411 107-191 (414)
430 3m6a_A ATP-dependent protease 50.9 8.3 0.00028 38.1 3.0 19 68-86 107-125 (543)
431 3dkp_A Probable ATP-dependent 50.9 27 0.00092 29.9 6.1 121 332-455 98-232 (245)
432 1e4v_A Adenylate kinase; trans 50.7 7.7 0.00026 32.7 2.4 17 71-87 2-18 (214)
433 2f1r_A Molybdopterin-guanine d 50.6 6.1 0.00021 32.2 1.6 16 71-86 4-19 (171)
434 2og2_A Putative signal recogni 50.5 16 0.00054 33.8 4.6 35 70-108 158-192 (359)
435 2vli_A Antibiotic resistance p 50.5 7.6 0.00026 31.6 2.3 19 69-87 5-23 (183)
436 3tlx_A Adenylate kinase 2; str 50.4 8.7 0.0003 33.2 2.7 19 69-87 29-47 (243)
437 2bbw_A Adenylate kinase 4, AK4 50.2 8.8 0.0003 33.2 2.7 18 69-86 27-44 (246)
438 2oca_A DAR protein, ATP-depend 50.1 55 0.0019 31.7 8.8 79 102-207 348-426 (510)
439 2xb4_A Adenylate kinase; ATP-b 50.0 8.9 0.0003 32.6 2.7 16 72-87 3-18 (223)
440 3tbk_A RIG-I helicase domain; 49.7 24 0.00081 34.6 6.2 75 332-410 52-134 (555)
441 1sgw_A Putative ABC transporte 49.7 8.8 0.0003 32.5 2.6 18 68-85 34-51 (214)
442 1j8m_F SRP54, signal recogniti 49.6 15 0.00052 32.9 4.3 34 71-108 100-133 (297)
443 3kta_A Chromosome segregation 49.5 8.9 0.0003 31.2 2.5 15 71-85 28-42 (182)
444 2xxa_A Signal recognition part 49.5 16 0.00053 34.9 4.5 35 71-108 102-136 (433)
445 4a2p_A RIG-I, retinoic acid in 49.3 28 0.00095 34.1 6.6 75 332-410 55-137 (556)
446 3l0o_A Transcription terminati 49.3 27 0.00092 32.7 5.8 33 53-86 160-192 (427)
447 1nkt_A Preprotein translocase 49.2 43 0.0015 35.0 7.8 76 328-409 148-237 (922)
448 2ipc_A Preprotein translocase 49.2 37 0.0013 35.6 7.3 61 328-394 116-177 (997)
449 3oaa_A ATP synthase subunit al 49.1 90 0.0031 30.1 9.6 70 50-124 144-215 (513)
450 1uf9_A TT1252 protein; P-loop, 49.0 8.3 0.00029 31.9 2.3 16 71-86 10-25 (203)
451 3tqc_A Pantothenate kinase; bi 48.8 19 0.00066 32.6 4.8 15 72-86 95-109 (321)
452 3be4_A Adenylate kinase; malar 48.7 8.4 0.00029 32.6 2.3 19 69-87 5-23 (217)
453 3e70_C DPA, signal recognition 48.5 16 0.00055 33.3 4.3 18 69-86 129-146 (328)
454 1wv9_A Rhodanese homolog TT165 48.5 18 0.00061 25.6 3.8 35 333-370 54-88 (94)
455 2ghi_A Transport protein; mult 48.5 7.7 0.00026 34.0 2.1 18 68-85 45-62 (260)
456 3nh6_A ATP-binding cassette SU 48.2 8 0.00027 34.9 2.2 19 67-85 78-96 (306)
457 1ls1_A Signal recognition part 47.6 18 0.00061 32.4 4.4 36 69-108 98-133 (295)
458 4a2q_A RIG-I, retinoic acid in 47.6 35 0.0012 35.5 7.2 75 332-410 296-378 (797)
459 2pze_A Cystic fibrosis transme 47.3 9 0.00031 32.9 2.3 18 68-85 33-50 (229)
460 3gfo_A Cobalt import ATP-bindi 47.2 8.7 0.0003 34.0 2.2 18 68-85 33-50 (275)
461 1ry6_A Internal kinesin; kines 47.1 8.6 0.00029 35.6 2.2 18 69-86 83-102 (360)
462 2obl_A ESCN; ATPase, hydrolase 47.0 16 0.00055 33.6 4.1 29 56-85 59-87 (347)
463 2ff7_A Alpha-hemolysin translo 47.0 9.1 0.00031 33.3 2.3 18 68-85 34-51 (247)
464 3qf7_A RAD50; ABC-ATPase, ATPa 46.8 8.1 0.00028 35.9 2.0 16 71-86 25-40 (365)
465 1b0u_A Histidine permease; ABC 46.7 8.5 0.00029 33.8 2.1 18 68-85 31-48 (262)
466 1m7g_A Adenylylsulfate kinase; 46.4 11 0.00038 31.6 2.7 19 69-87 25-43 (211)
467 1r6b_X CLPA protein; AAA+, N-t 46.4 16 0.00055 37.7 4.5 20 68-87 206-225 (758)
468 2dhr_A FTSH; AAA+ protein, hex 46.4 9.9 0.00034 37.0 2.6 17 70-86 65-81 (499)
469 1mv5_A LMRA, multidrug resista 46.1 7.3 0.00025 33.8 1.5 18 68-85 27-44 (243)
470 1g6h_A High-affinity branched- 45.9 9.7 0.00033 33.3 2.3 18 68-85 32-49 (257)
471 1vpl_A ABC transporter, ATP-bi 45.8 8.9 0.00031 33.5 2.1 18 68-85 40-57 (256)
472 1ji0_A ABC transporter; ATP bi 45.8 9.8 0.00033 32.9 2.3 18 68-85 31-48 (240)
473 2ixe_A Antigen peptide transpo 45.8 9 0.00031 33.9 2.1 18 68-85 44-61 (271)
474 1vht_A Dephospho-COA kinase; s 45.7 11 0.00039 31.7 2.7 16 71-86 6-21 (218)
475 2olj_A Amino acid ABC transpor 45.6 9 0.00031 33.7 2.1 18 68-85 49-66 (263)
476 1rz3_A Hypothetical protein rb 45.6 10 0.00035 31.6 2.4 17 70-86 23-39 (201)
477 2dpy_A FLII, flagellum-specifi 45.6 25 0.00087 33.5 5.3 29 56-85 145-173 (438)
478 4g1u_C Hemin import ATP-bindin 45.5 9.7 0.00033 33.5 2.2 18 68-85 36-53 (266)
479 3hjh_A Transcription-repair-co 45.5 2.1E+02 0.007 27.5 11.7 105 317-424 25-146 (483)
480 1ypw_A Transitional endoplasmi 45.5 11 0.00038 39.2 3.1 19 68-86 237-255 (806)
481 2pcj_A ABC transporter, lipopr 45.4 8.7 0.0003 32.8 1.9 18 68-85 29-46 (224)
482 2yz2_A Putative ABC transporte 45.3 9.2 0.00032 33.7 2.1 18 68-85 32-49 (266)
483 3g5j_A Putative ATP/GTP bindin 44.9 28 0.00096 26.3 4.7 38 331-371 87-126 (134)
484 2yhs_A FTSY, cell division pro 44.9 22 0.00075 34.4 4.7 34 70-107 294-327 (503)
485 1xjc_A MOBB protein homolog; s 44.7 27 0.00093 28.2 4.6 16 71-86 6-21 (169)
486 1uj2_A Uridine-cytidine kinase 44.6 12 0.00042 32.4 2.8 16 72-87 25-40 (252)
487 1pzn_A RAD51, DNA repair and r 44.4 12 0.00042 34.4 2.8 21 69-89 131-151 (349)
488 3hix_A ALR3790 protein; rhodan 44.3 20 0.00067 26.1 3.5 38 331-370 51-88 (106)
489 2zu0_C Probable ATP-dependent 44.3 12 0.00042 32.9 2.7 18 68-85 45-62 (267)
490 2jeo_A Uridine-cytidine kinase 44.1 12 0.00041 32.3 2.6 18 69-86 25-42 (245)
491 1odf_A YGR205W, hypothetical 3 44.1 12 0.00042 33.4 2.7 15 72-86 34-48 (290)
492 2qi9_C Vitamin B12 import ATP- 44.1 11 0.00037 32.9 2.3 18 68-85 25-42 (249)
493 3flh_A Uncharacterized protein 44.1 16 0.00053 27.6 3.0 36 332-370 71-108 (124)
494 2z0m_A 337AA long hypothetical 44.0 39 0.0013 30.3 6.3 74 332-410 56-136 (337)
495 3qks_A DNA double-strand break 43.2 11 0.00036 31.6 2.0 15 71-85 25-39 (203)
496 1ltq_A Polynucleotide kinase; 42.9 10 0.00035 33.9 2.0 16 71-86 4-19 (301)
497 3auy_A DNA double-strand break 42.9 8.9 0.00031 35.7 1.7 14 72-85 28-41 (371)
498 2r9v_A ATP synthase subunit al 42.8 90 0.0031 30.2 8.6 69 50-123 157-227 (515)
499 2ihy_A ABC transporter, ATP-bi 42.7 11 0.00039 33.3 2.3 18 68-85 46-63 (279)
500 2nq2_C Hypothetical ABC transp 42.6 11 0.00039 32.8 2.2 18 68-85 30-47 (253)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.3e-54 Score=421.30 Aligned_cols=379 Identities=25% Similarity=0.413 Sum_probs=317.4
Q ss_pred cCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 011605 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~ 95 (481)
..|.+..+|+++. |++.+.+.++.+||..|+++|.++++.++. ++++++++|||+|||++|+++++..+.
T Consensus 50 ~~p~~~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~ 119 (434)
T 2db3_A 50 DVPQPIQHFTSAD------LRDIIIDNVNKSGYKIPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLL 119 (434)
T ss_dssp SCCCCCCCGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCcCChhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHH
Confidence 4456677788875 999999999999999999999999999886 899999999999999999999999887
Q ss_pred Hhc----cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcC
Q 011605 96 NRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (481)
Q Consensus 96 ~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (481)
... ..++++||++||++|+.|+.+.+++++...++++..++|+........ .+..
T Consensus 120 ~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---------------------~l~~ 178 (434)
T 2db3_A 120 EDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---------------------CITR 178 (434)
T ss_dssp HSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---------------------HHTT
T ss_pred hcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---------------------Hhhc
Confidence 643 236789999999999999999999998887889999999887655432 2335
Q ss_pred CCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhh
Q 011605 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (481)
Q Consensus 172 ~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
+++|+|+||+++.+++.... ..+++++++|+||||++.+.+|...+..++......
T Consensus 179 ~~~Ivv~Tp~~l~~~l~~~~-~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~----------------------- 234 (434)
T 2db3_A 179 GCHVVIATPGRLLDFVDRTF-ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR----------------------- 234 (434)
T ss_dssp CCSEEEECHHHHHHHHHTTS-CCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC-----------------------
T ss_pred CCCEEEEChHHHHHHHHhCC-cccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC-----------------------
Confidence 78999999999999987643 568899999999999999999988888887764211
Q ss_pred ccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcC
Q 011605 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331 (481)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 331 (481)
+..+.+++|||++.....+....+.++..+........ ...+...........|...+.+++....
T Consensus 235 -------------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~-~~~i~~~~~~~~~~~k~~~l~~~l~~~~ 300 (434)
T 2db3_A 235 -------------PEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGA-CSDVKQTIYEVNKYAKRSKLIEILSEQA 300 (434)
T ss_dssp -------------SSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCC-CTTEEEEEEECCGGGHHHHHHHHHHHCC
T ss_pred -------------CCceEEEEeccCCHHHHHHHHHhccCCEEEEecccccc-ccccceEEEEeCcHHHHHHHHHHHHhCC
Confidence 34489999999988888777777777766554433222 1223333344455667788888887765
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~ 411 (481)
. ++||||++.+.++.+++.|.+.+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 301 ~-~~lVF~~t~~~a~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d 376 (434)
T 2db3_A 301 D-GTIVFVETKRGADFLASFLSEKE---FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYD 376 (434)
T ss_dssp T-TEEEECSSHHHHHHHHHHHHHTT---CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESS
T ss_pred C-CEEEEEeCcHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEEC
Confidence 4 49999999999999999999876 8899999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHhhhcccCCCCccEEEEeec-chHHHHHHHHHHhcCCCCCCCCCCchhhh
Q 011605 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHK-DEVKRFKKLLQKADNDSCPIHSIPSSLIE 470 (481)
Q Consensus 412 ~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (481)
.|.+..+|+||+||+||.|+.|.+++|+++ .+...+..+.+.+.... +++|+.+.+
T Consensus 377 ~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~---~~vp~~l~~ 433 (434)
T 2db3_A 377 MPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSG---QTVPDFLRT 433 (434)
T ss_dssp CCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTT---CCCCGGGC-
T ss_pred CCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcC---CCCCHHHHh
Confidence 999999999999999999999999999994 56677788888887766 778877654
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.8e-52 Score=408.58 Aligned_cols=388 Identities=27% Similarity=0.408 Sum_probs=316.7
Q ss_pred cCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 011605 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~ 95 (481)
..|.+..+|+++. |++.+.+.+..+||..|+++|.++++.++. ++++++.+|||+|||++++++++..+.
T Consensus 9 ~~p~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~ 78 (417)
T 2i4i_A 9 NCPPHIESFSDVE------MGEIIMGNIELTRYTRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIY 78 (417)
T ss_dssp TCCCCCSSGGGSC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCcccCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 4577778899986 999999999999999999999999998876 899999999999999999999998876
Q ss_pred Hhcc-----------------CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCc
Q 011605 96 NRAV-----------------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158 (481)
Q Consensus 96 ~~~~-----------------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 158 (481)
.... .++++||++||++|+.|+.+.+++++...++.+..+.|+.........
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------- 147 (417)
T 2i4i_A 79 SDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD----------- 147 (417)
T ss_dssp HHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH-----------
T ss_pred hccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH-----------
Confidence 6421 236799999999999999999999988778899999998876554332
Q ss_pred cCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccc
Q 011605 159 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAST 238 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 238 (481)
+..+++|+|+||+++.+.+... ...++.+++||+||+|++.++++...+..++.......
T Consensus 148 ----------~~~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~--------- 207 (417)
T 2i4i_A 148 ----------LERGCHLLVATPGRLVDMMERG-KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP--------- 207 (417)
T ss_dssp ----------HTTCCSEEEECHHHHHHHHHTT-SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCC---------
T ss_pred ----------hhCCCCEEEEChHHHHHHHHcC-CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCC---------
Confidence 2356799999999999988764 35688899999999999998888888877766432110
Q ss_pred cccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCc
Q 011605 239 FLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL 318 (481)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (481)
....+.+++|||++..........+..+.......... ....+...........
T Consensus 208 -------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ 261 (417)
T 2i4i_A 208 -------------------------KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGS-TSENITQKVVWVEESD 261 (417)
T ss_dssp -------------------------BTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----CCSSEEEEEEECCGGG
T ss_pred -------------------------cCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCC-CccCceEEEEEeccHh
Confidence 02447899999998776666666666665444332221 1222333333445566
Q ss_pred hHHHHHHHHHhc-CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcccccc
Q 011605 319 KPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397 (481)
Q Consensus 319 k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~ 397 (481)
+...+..++... .++++||||+++++++.+++.|.+.+ ..+..+||+++..+|.++++.|++|+.+|||||+++++
T Consensus 262 ~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 338 (417)
T 2i4i_A 262 KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 338 (417)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHT
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC---CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhc
Confidence 777888888776 56789999999999999999999876 88999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhhhhhccc
Q 011605 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVY 476 (481)
Q Consensus 398 Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (481)
|+|+|++++||+++.|.+...|+||+||+||.|+.|.|++++++.+...+.++++.+.... ..+|..+.+......
T Consensus 339 Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~l~~~~~~~~ 414 (417)
T 2i4i_A 339 GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK---QEVPSWLENMAYEHH 414 (417)
T ss_dssp TSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT---CCCCHHHHHHHTCSC
T ss_pred CCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc---CcCCHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999998766 677777665554433
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.3e-51 Score=404.50 Aligned_cols=370 Identities=24% Similarity=0.413 Sum_probs=307.4
Q ss_pred CCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccC
Q 011605 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~ 100 (481)
..+|+++. |++.+.+.++.+||..|+++|.++++.++. ++++++.+|||+|||++++++++..+... ..
T Consensus 36 ~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~ 104 (410)
T 2j0s_A 36 TPTFDTMG------LREDLLRGIYAYGFEKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQ-VR 104 (410)
T ss_dssp CCSGGGGC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTT-SC
T ss_pred CCCHhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhc-cC
Confidence 34566664 999999999999999999999999999886 78999999999999999999988876543 34
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCc
Q 011605 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~ 180 (481)
+.++||++|+++|+.|+.+.+.+++...++.+....|+......... +..+++|+|+||
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~ivv~Tp 163 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---------------------LDYGQHVVAGTP 163 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---------------------HHHCCSEEEECH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---------------------hhcCCCEEEcCH
Confidence 56899999999999999999999988888899888888876554332 234669999999
Q ss_pred hHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccC
Q 011605 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
+.+.+.+... ...+..+++||+||+|++.+.++...+..++....
T Consensus 164 ~~l~~~l~~~-~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~---------------------------------- 208 (410)
T 2j0s_A 164 GRVFDMIRRR-SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP---------------------------------- 208 (410)
T ss_dssp HHHHHHHHTT-SSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSC----------------------------------
T ss_pred HHHHHHHHhC-CccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCc----------------------------------
Confidence 9999988763 45678899999999999988887777776665442
Q ss_pred CCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEec
Q 011605 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (481)
Q Consensus 261 ~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~ 340 (481)
+..+++++|||++..........+.++..+...............+........+...+..++.....+++||||+
T Consensus 209 ----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~ 284 (410)
T 2j0s_A 209 ----PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCN 284 (410)
T ss_dssp ----TTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECS
T ss_pred ----cCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEc
Confidence 2347899999998777777777777766554433332222222233333344557888888888888889999999
Q ss_pred chhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHH
Q 011605 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (481)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~ 420 (481)
+.+.++.+++.|.+.+ ..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|++...|+
T Consensus 285 ~~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~ 361 (410)
T 2j0s_A 285 TKRKVDWLTEKMREAN---FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYI 361 (410)
T ss_dssp SHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHH
T ss_pred CHHHHHHHHHHHHhCC---CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHH
Confidence 9999999999999876 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCch
Q 011605 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSS 467 (481)
Q Consensus 421 Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (481)
||+||+||.|+.|.|++++...+...++++.+.++..- .++|.+
T Consensus 362 Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~ 405 (410)
T 2j0s_A 362 HRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQI---DEMPMN 405 (410)
T ss_dssp HHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCC---EECCSC
T ss_pred HhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCc---eecccc
Confidence 99999999999999999999999999999999886533 444443
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.4e-51 Score=397.85 Aligned_cols=373 Identities=28% Similarity=0.476 Sum_probs=308.6
Q ss_pred CCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccC
Q 011605 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~ 100 (481)
..+|+++. |++.+.+.+.++||..|+++|.++++.++. ++++++.+|||+|||++++++++..+... ..
T Consensus 20 ~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~-~~ 88 (400)
T 1s2m_A 20 GNTFEDFY------LKRELLMGIFEAGFEKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPK-LN 88 (400)
T ss_dssp -CCGGGGC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTT-SC
T ss_pred cCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhc-cC
Confidence 44577775 999999999999999999999999999886 78899999999999999999988876543 24
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCc
Q 011605 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~ 180 (481)
+.+++|++|+++|+.|+.+.+++++...++.+....|+......... ...+++|+|+||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~Ivv~T~ 147 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR---------------------LNETVHILVGTP 147 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH---------------------TTSCCSEEEECH
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH---------------------hcCCCCEEEEch
Confidence 56899999999999999999999998888899998888776544322 235679999999
Q ss_pred hHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccC
Q 011605 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
+.+.+.+... ...+.++++||+||+|++.+.++...+..+.....
T Consensus 148 ~~l~~~~~~~-~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~---------------------------------- 192 (400)
T 1s2m_A 148 GRVLDLASRK-VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP---------------------------------- 192 (400)
T ss_dssp HHHHHHHHTT-CSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSC----------------------------------
T ss_pred HHHHHHHHhC-CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC----------------------------------
Confidence 9999887663 35678899999999999988888877777765542
Q ss_pred CCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEec
Q 011605 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (481)
Q Consensus 261 ~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~ 340 (481)
+..+.+++|||++..........+..+........ ........+........+...+..++.....+++||||+
T Consensus 193 ----~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~ 266 (400)
T 1s2m_A 193 ----PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCN 266 (400)
T ss_dssp ----SSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECS
T ss_pred ----cCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEe
Confidence 23478999999987766666666655544332221 112223334444455667788888888888899999999
Q ss_pred chhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHH
Q 011605 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (481)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~ 420 (481)
+++.++.+++.|++.+ ..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|++...|+
T Consensus 267 ~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~ 343 (400)
T 1s2m_A 267 STNRVELLAKKITDLG---YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYL 343 (400)
T ss_dssp SHHHHHHHHHHHHHHT---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHH
T ss_pred cHHHHHHHHHHHHhcC---CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHH
Confidence 9999999999999876 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhhhh
Q 011605 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 472 (481)
Q Consensus 421 Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (481)
||+||+||.|+.|.|+++++..+...++++++.+...- .++|..+.+.+
T Consensus 344 Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~ 392 (400)
T 1s2m_A 344 HRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEI---AAIPATIDKSL 392 (400)
T ss_dssp HHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCC---EECCSSCCGGG
T ss_pred HhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCc---ccccccccccc
Confidence 99999999999999999999999999999999886543 56666655544
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.5e-51 Score=401.32 Aligned_cols=367 Identities=24% Similarity=0.403 Sum_probs=294.1
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
++++.+.+.+.++||..|+++|.+++..++. ++++++.+|||+|||++++++++..+... ..+.+++|++|+++|
T Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L 120 (414)
T 3eiq_A 46 NLSESLLRGIYAYGFEKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELD-LKATQALVLAPTREL 120 (414)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTT-SCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhc-CCceeEEEEeChHHH
Confidence 3999999999999999999999999999886 88999999999999999999998877654 245689999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCc
Q 011605 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
+.|+.+.+++++...+..+....|+........... ..+++|+|+||+.+.+.+.. ...
T Consensus 121 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~iiv~T~~~l~~~l~~-~~~ 179 (414)
T 3eiq_A 121 AQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQ--------------------MEAPHIIVGTPGRVFDMLNR-RYL 179 (414)
T ss_dssp HHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHT--------------------TTCCSEEEECHHHHHHHHHH-TSS
T ss_pred HHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHh--------------------cCCCCEEEECHHHHHHHHHc-CCc
Confidence 999999999998888888888888877655543322 24579999999999998876 335
Q ss_pred ccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeec
Q 011605 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 273 (481)
.+..+++||+||||++.++++...+..++.... +..+++++|
T Consensus 180 ~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~i~~S 221 (414)
T 3eiq_A 180 SPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN--------------------------------------SNTQVVLLS 221 (414)
T ss_dssp CSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSC--------------------------------------TTCEEEEEC
T ss_pred ccccCcEEEEECHHHhhccCcHHHHHHHHHhCC--------------------------------------CCCeEEEEE
Confidence 677899999999999988888777777765542 244789999
Q ss_pred eeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHh
Q 011605 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~ 353 (481)
||+...........+.++..+...............+........+...+..++.....+++||||+++++++.+++.|.
T Consensus 222 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~ 301 (414)
T 3eiq_A 222 ATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMH 301 (414)
T ss_dssp SCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHH
Confidence 99988777777777777766555444433333334444445556688888998888888999999999999999999999
Q ss_pred hccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCc
Q 011605 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g 433 (481)
+.+ ..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|.+...|.||+||+||.|+.|
T Consensus 302 ~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g 378 (414)
T 3eiq_A 302 ARD---FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 378 (414)
T ss_dssp TTT---CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------
T ss_pred hcC---CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCc
Confidence 776 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhh
Q 011605 434 RCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIE 470 (481)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (481)
.|++++++.+...+.++.+.++..- .++|.++.+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 412 (414)
T 3eiq_A 379 VAINMVTEEDKRTLRDIETFYNTSI---EEMPLNVAD 412 (414)
T ss_dssp CEEEEECSTHHHHHHHHHHHTTCCC---EECCC----
T ss_pred eEEEEEcHHHHHHHHHHHHHHcCCc---cccChhhhh
Confidence 9999999999999999999886654 566665544
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.6e-49 Score=387.28 Aligned_cols=370 Identities=25% Similarity=0.358 Sum_probs=300.2
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCC
Q 011605 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (481)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~ 101 (481)
++|++.. |++.+.+.++++||..|+++|.++++.++. ++++++.+|||+|||++++++++..+... ..+
T Consensus 8 ~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~ 76 (391)
T 1xti_A 8 SGFRDFL------LKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV-TGQ 76 (391)
T ss_dssp -CGGGGC------CCHHHHHHHHHHSCCSCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCC-TTC
T ss_pred CChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhccc-CCC
Confidence 4577775 999999999999999999999999999876 78999999999999999999988776543 245
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCc
Q 011605 102 LRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~ 180 (481)
.++||++|+++|+.|+.+.+.++.... ++++..+.|+.........+. ...++|+|+||
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------------~~~~~iiv~T~ 136 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK--------------------KNCPHIVVGTP 136 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH--------------------HSCCSEEEECH
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh--------------------cCCCCEEEECH
Confidence 689999999999999999999998765 788889998887655433221 13469999999
Q ss_pred hHHHHHHhcCCCcccCCccEEEEechhHhhH-HHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccccccc
Q 011605 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
+.+...+... ...+.++++||+||||++.+ .++...+..++....
T Consensus 137 ~~l~~~~~~~-~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~--------------------------------- 182 (391)
T 1xti_A 137 GRILALARNK-SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP--------------------------------- 182 (391)
T ss_dssp HHHHHHHHTT-SSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC---------------------------------
T ss_pred HHHHHHHHcC-CccccccCEEEEeCHHHHhhccchHHHHHHHHhhCC---------------------------------
Confidence 9999988763 35678899999999999876 456666666654432
Q ss_pred CCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEe
Q 011605 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (481)
Q Consensus 260 ~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~ 339 (481)
...+.+++|||+...........+..+..+...............+........+...+.+++.....+++||||
T Consensus 183 -----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~ 257 (391)
T 1xti_A 183 -----HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFV 257 (391)
T ss_dssp -----SSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEEC
T ss_pred -----CCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEe
Confidence 234789999999988777777777666655443332222233344444555667788888888888889999999
Q ss_pred cchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHH
Q 011605 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (481)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~ 419 (481)
+++++++.+++.|.+.+ ..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|++...|
T Consensus 258 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~ 334 (391)
T 1xti_A 258 KSVQRCIALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 334 (391)
T ss_dssp SCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHH
T ss_pred CcHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 99999999999999876 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCccEEEEeecchH-HHHHHHHHHhcCCCCCCCCCCch
Q 011605 420 IHRAGRTARAGQLGRCFTLLHKDEV-KRFKKLLQKADNDSCPIHSIPSS 467 (481)
Q Consensus 420 ~Q~~GR~~R~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 467 (481)
+||+||+||.|+.|.|++++...+. ..+..+.+.++. +..++|.+
T Consensus 335 ~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 380 (391)
T 1xti_A 335 LHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV---NISELPDE 380 (391)
T ss_dssp HHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTC---CCEECCSC
T ss_pred HHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcC---ChhhCCcc
Confidence 9999999999999999999987754 556666666533 33455544
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.3e-49 Score=388.92 Aligned_cols=364 Identities=23% Similarity=0.351 Sum_probs=294.6
Q ss_pred CCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhcc
Q 011605 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~ 99 (481)
...+|+++. |++.+.+.+.++||..|+++|.++++.++.. .++++++.+|||+|||++++++++..+... .
T Consensus 23 ~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~ 93 (412)
T 3fht_A 23 SVKSFEELR------LKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-N 93 (412)
T ss_dssp CSSCTGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTT-S
T ss_pred ccCCHhhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhc-C
Confidence 345677764 9999999999999999999999999998872 248899999999999999999998877654 3
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEe
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~ 178 (481)
.+++++|++|+++|+.|+.+.++++.... +..+....++...... ....++|+|+
T Consensus 94 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~ivv~ 149 (412)
T 3fht_A 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIG 149 (412)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT------------------------CCCCCSEEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh------------------------hcCCCCEEEE
Confidence 45689999999999999999999987654 5667766666543211 1235699999
Q ss_pred CchHHHHHHhcCCCcccCCccEEEEechhHhhH-HHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccccc
Q 011605 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (481)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (481)
||+.+.+.+.......+.++++||+||+|++.+ .++...+..+.....
T Consensus 150 T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~------------------------------- 198 (412)
T 3fht_A 150 TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------------- 198 (412)
T ss_dssp CHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC-------------------------------
T ss_pred CchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC-------------------------------
Confidence 999999998775666788999999999999876 455555555554432
Q ss_pred ccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEE
Q 011605 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337 (481)
Q Consensus 258 ~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lV 337 (481)
+..+++++|||+...........+..+..+...............+........+...+..++.....+++||
T Consensus 199 -------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lv 271 (412)
T 3fht_A 199 -------RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMI 271 (412)
T ss_dssp -------TTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEE
T ss_pred -------CCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEE
Confidence 2347999999998877777777777666655444333333333333333444567778888888888899999
Q ss_pred EecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCC---
Q 011605 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA--- 414 (481)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~--- 414 (481)
||+++++++.+++.|.+.+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 272 f~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~ 348 (412)
T 3fht_A 272 FCHTRKTASWLAAELSKEG---HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD 348 (412)
T ss_dssp ECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSS
T ss_pred EeCCHHHHHHHHHHHHhCC---CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCC
Confidence 9999999999999999876 7899999999999999999999999999999999999999999999999999994
Q ss_pred ---ChhHHHHHhhhcccCCCCccEEEEeecch-HHHHHHHHHHhcCC
Q 011605 415 ---YIKTYIHRAGRTARAGQLGRCFTLLHKDE-VKRFKKLLQKADND 457 (481)
Q Consensus 415 ---s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ 457 (481)
+..+|+||+||+||.|+.|.|+++++..+ ...+..+.+.++..
T Consensus 349 ~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 395 (412)
T 3fht_A 349 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKK 395 (412)
T ss_dssp SSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCC
T ss_pred CCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCc
Confidence 67899999999999999999999998765 66777777777543
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.8e-49 Score=385.22 Aligned_cols=360 Identities=22% Similarity=0.315 Sum_probs=287.8
Q ss_pred CCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhcc
Q 011605 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~ 99 (481)
-..+|+++. |++.+.+.+.++||..|+++|.++++.++.. .++++++.+|||+|||++++++++..+... .
T Consensus 3 ~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-~ 73 (395)
T 3pey_A 3 MAKSFDELG------LAPELLKGIYAMKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-D 73 (395)
T ss_dssp -CCSSTTSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTT-C
T ss_pred cccCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccC-C
Confidence 346677775 9999999999999999999999999998872 238899999999999999999988876554 3
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.++||++|+++|+.|+.+.+++++...++.+....++..... ...+++|+|+|
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~iiv~T 128 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN-------------------------KQINAQVIVGT 128 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT-------------------------SCBCCSEEEEC
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh-------------------------ccCCCCEEEEc
Confidence 45689999999999999999999998777777777776643211 12357999999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEechhHhhH-HHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccc
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (481)
|+.+.+.+.. ....+.++++||+||||++.+ .++...+..+.....
T Consensus 129 ~~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~-------------------------------- 175 (395)
T 3pey_A 129 PGTVLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP-------------------------------- 175 (395)
T ss_dssp HHHHHHHHHT-TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSC--------------------------------
T ss_pred HHHHHHHHHc-CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCC--------------------------------
Confidence 9999998876 335688899999999999876 455555555544432
Q ss_pred cCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEE
Q 011605 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338 (481)
Q Consensus 259 ~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf 338 (481)
+..+++++|||+...........+..+..................+........+...+..++.....+++|||
T Consensus 176 ------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf 249 (395)
T 3pey_A 176 ------KDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIF 249 (395)
T ss_dssp ------TTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEE
T ss_pred ------CCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEE
Confidence 23478999999987766666666655554443333322222222333333445566777777777778999999
Q ss_pred ecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCC----
Q 011605 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA---- 414 (481)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~---- 414 (481)
|+++.+++.+++.|++.+ ..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|+
T Consensus 250 ~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~ 326 (395)
T 3pey_A 250 VATKKTANVLYGKLKSEG---HEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANG 326 (395)
T ss_dssp CSCHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTS
T ss_pred eCCHHHHHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcC
Confidence 999999999999999876 7899999999999999999999999999999999999999999999999999998
Q ss_pred --ChhHHHHHhhhcccCCCCccEEEEeecchHH-HHHHHHHHhc
Q 011605 415 --YIKTYIHRAGRTARAGQLGRCFTLLHKDEVK-RFKKLLQKAD 455 (481)
Q Consensus 415 --s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~-~~~~~~~~~~ 455 (481)
++..|+||+||+||.|+.|.|++++...+.. .+..+.+.+.
T Consensus 327 ~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 327 QADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp SBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 9999999999999999999999999876554 5555555554
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1e-50 Score=396.21 Aligned_cols=376 Identities=26% Similarity=0.428 Sum_probs=168.1
Q ss_pred CCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc
Q 011605 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (481)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~ 98 (481)
....+|+++. |++.+.+.+..+||..|+++|.++++.++. ++++++.+|||+|||++++++++..+...
T Consensus 18 ~~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~- 86 (394)
T 1fuu_A 18 KVVYKFDDME------LDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTS- 86 (394)
T ss_dssp CCCCSSGGGC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTT-
T ss_pred cccCChhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhcc-
Confidence 3345677775 999999999999999999999999999886 78999999999999999999988877654
Q ss_pred cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEe
Q 011605 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (481)
Q Consensus 99 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~ 178 (481)
..++++||++|+++|+.|+.+.+.+++...++.+..+.|+.........+ .+++|+|+
T Consensus 87 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------------~~~~i~v~ 144 (394)
T 1fuu_A 87 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL----------------------RDAQIVVG 144 (394)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHH----------------------HHCSEEEE
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhc----------------------CCCCEEEE
Confidence 34668999999999999999999999888889999999988765543222 13589999
Q ss_pred CchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccc
Q 011605 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (481)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (481)
||+.+.+.+... ...+.+++++|+||+|++.+.++...+..++....
T Consensus 145 T~~~l~~~~~~~-~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~-------------------------------- 191 (394)
T 1fuu_A 145 TPGRVFDNIQRR-RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP-------------------------------- 191 (394)
T ss_dssp CHHHHHHHHHTT-SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC--------------------------------
T ss_pred CHHHHHHHHHhC-CcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCC--------------------------------
Confidence 999999988763 35678899999999999988887777777766543
Q ss_pred cCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEE
Q 011605 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338 (481)
Q Consensus 259 ~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf 338 (481)
+..+.+++|||+...........+..+..+...............+........+...+..++.....+++|||
T Consensus 192 ------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf 265 (394)
T 1fuu_A 192 ------PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIF 265 (394)
T ss_dssp ------TTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------------------------
T ss_pred ------CCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEE
Confidence 23478999999987766666666666655443333222222222222223333456666777776677899999
Q ss_pred ecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhH
Q 011605 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (481)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~ 418 (481)
|+++++++.+++.|++.+ ..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|+++..
T Consensus 266 ~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~ 342 (394)
T 1fuu_A 266 CNTRRKVEELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKEN 342 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECCHHHHHHHHHHHHHcC---CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHH
Confidence 999999999999998765 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchhhhhh
Q 011605 419 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESL 472 (481)
Q Consensus 419 ~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (481)
|.||+||+||.|+.|.|++++.+.+...+..+.+.+...- ..+|..+.+.+
T Consensus 343 ~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~ 393 (394)
T 1fuu_A 343 YIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQI---EELPSDIATLL 393 (394)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcc---cccCcchhhhc
Confidence 9999999999999999999999999998888887765433 55555554433
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.8e-48 Score=375.27 Aligned_cols=356 Identities=28% Similarity=0.462 Sum_probs=291.6
Q ss_pred CCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhcc
Q 011605 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~ 99 (481)
...+|+++. |++.+.+.++++||..|+++|.++++.++. .++++++.+|||+|||++++++++..+...
T Consensus 4 ~~~~f~~~~------l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-- 72 (367)
T 1hv8_A 4 EYMNFNELN------LSDNILNAIRNKGFEKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN-- 72 (367)
T ss_dssp CCCCGGGSS------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS--
T ss_pred ccCchhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc--
Confidence 344577775 999999999999999999999999999886 136899999999999999998888766543
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.+++|++|+++|+.|+.+.+.+++...++.+....|+.......... .+++|+|+|
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------------~~~~iiv~T 130 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL----------------------KNANIVVGT 130 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH----------------------HTCSEEEEC
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc----------------------CCCCEEEec
Confidence 4568999999999999999999999877788888888887765443221 246999999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccccccc
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
|+.+.+.+... ...+.+++++|+||+|.+.+.++...+..++....
T Consensus 131 ~~~l~~~~~~~-~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~--------------------------------- 176 (367)
T 1hv8_A 131 PGRILDHINRG-TLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN--------------------------------- 176 (367)
T ss_dssp HHHHHHHHHTT-CSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC---------------------------------
T ss_pred HHHHHHHHHcC-CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC---------------------------------
Confidence 99999988763 35678899999999999988777766666665442
Q ss_pred CCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEe
Q 011605 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (481)
Q Consensus 260 ~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~ 339 (481)
+..+.+++|||+...........+.++........ ..............+...+..++. ..+.++||||
T Consensus 177 -----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~ 245 (367)
T 1hv8_A 177 -----KDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN-----ANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFC 245 (367)
T ss_dssp -----SSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS-----SSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEEC
T ss_pred -----CCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC-----CCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEE
Confidence 23478999999987666555555544433332221 122223333445566666666665 4567899999
Q ss_pred cchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHH
Q 011605 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (481)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~ 419 (481)
+++++++.+++.|++.+ ..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|+++.+|
T Consensus 246 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~ 322 (367)
T 1hv8_A 246 KTKRDTKELASMLRDIG---FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESY 322 (367)
T ss_dssp SSHHHHHHHHHHHHHTT---CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHH
T ss_pred CCHHHHHHHHHHHHhcC---CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHh
Confidence 99999999999999876 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcC
Q 011605 420 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (481)
Q Consensus 420 ~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (481)
.||+||+||.|+.|.|++++++.+...++.+.+.++.
T Consensus 323 ~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 323 MHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp HHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred hhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999988854
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8e-48 Score=392.44 Aligned_cols=369 Identities=28% Similarity=0.417 Sum_probs=289.2
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc---cCCccEEEEccc
Q 011605 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPT 110 (481)
Q Consensus 34 ~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~---~~~~~~lil~Pt 110 (481)
.|++++.+++..+||..|+++|.++++.++.. .++++++.+|||+|||++|+++++..+.... ..++++||++||
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Pt 104 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 104 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcch
Confidence 39999999999999999999999999998841 2788999999999999999999999887753 234689999999
Q ss_pred HHHHHHHHHHHHHhccc----cCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHH
Q 011605 111 RDLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (481)
Q Consensus 111 ~~L~~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~ 186 (481)
++|+.|+.+.+.+++.. ....+....|+.........+. ..+++|+|+||+++...
T Consensus 105 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~--------------------~~~~~IlV~Tp~~l~~~ 164 (579)
T 3sqw_A 105 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN--------------------KLRPNIVIATPGRLIDV 164 (579)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHH--------------------HHCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHh--------------------cCCCCEEEECHHHHHHH
Confidence 99999999999998642 2456677777766554433322 23579999999999988
Q ss_pred HhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcc
Q 011605 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (481)
Q Consensus 187 l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (481)
+.......++.+++||+||||++.+++|...+..+...+...... ..+.
T Consensus 165 l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~-------------------------------~~~~ 213 (579)
T 3sqw_A 165 LEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-------------------------------SADN 213 (579)
T ss_dssp HHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-------------------------------CTTC
T ss_pred HHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcc-------------------------------cccC
Confidence 876433457889999999999999999999988888776432210 0134
Q ss_pred eeeeeeceeeccCchhhhcccccCCceeecCCc---cccCcccccccccccCC-CchH-H---HHHHHHHh-cCCCeEEE
Q 011605 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET---RYKLPERLESYKLICES-KLKP-L---YLVALLQS-LGEEKCIV 337 (481)
Q Consensus 267 ~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~k~-~---~l~~~l~~-~~~~~~lV 337 (481)
.+++++|||++..........+..+........ .......+......... ..+. . .+...+.. ..+.++||
T Consensus 214 ~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iV 293 (579)
T 3sqw_A 214 IKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAII 293 (579)
T ss_dssp CEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEE
Confidence 589999999988777777777666543322111 11111122222222222 2222 2 22222222 45679999
Q ss_pred EecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChh
Q 011605 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (481)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~ 417 (481)
||+++..++.+++.|.+....+..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.++.
T Consensus 294 F~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~ 373 (579)
T 3sqw_A 294 FAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELA 373 (579)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTT
T ss_pred ECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHH
Confidence 99999999999999988633347899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhc
Q 011605 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 418 ~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
.|+||+||+||.|+.|.|++++.+.+...++.+++...
T Consensus 374 ~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 374 NYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 411 (579)
T ss_dssp HHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred HhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999988764
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.7e-47 Score=387.56 Aligned_cols=369 Identities=28% Similarity=0.417 Sum_probs=288.0
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhcc---CCccEEEEccc
Q 011605 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPT 110 (481)
Q Consensus 34 ~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~---~~~~~lil~Pt 110 (481)
.|++.+.+++..+||..|+++|.++++.++.. .++++++.+|||+|||++|+++++..+..... .++++||++||
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~--~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Pt 155 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 155 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCc
Confidence 38999999999999999999999999998841 26789999999999999999999998877542 24589999999
Q ss_pred HHHHHHHHHHHHHhcccc----CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHH
Q 011605 111 RDLALQVKDVFAAIAPAV----GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (481)
Q Consensus 111 ~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~ 186 (481)
++|+.|+.+.+++++... ...+....|+.........+. ..+++|+|+||+++.+.
T Consensus 156 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------------~~~~~Iiv~Tp~~l~~~ 215 (563)
T 3i5x_A 156 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN--------------------KLRPNIVIATPGRLIDV 215 (563)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHH--------------------HHCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHh--------------------cCCCCEEEECcHHHHHH
Confidence 999999999999875421 355677777776554433221 24679999999999988
Q ss_pred HhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcc
Q 011605 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (481)
Q Consensus 187 l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (481)
+.......++.+++||+||||++.+++|...+..+...+...... ..+.
T Consensus 216 l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~-------------------------------~~~~ 264 (563)
T 3i5x_A 216 LEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-------------------------------SADN 264 (563)
T ss_dssp HHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-------------------------------CTTC
T ss_pred HHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhcccc-------------------------------CccC
Confidence 876433457889999999999999999999988888776432210 1135
Q ss_pred eeeeeeceeeccCchhhhcccccCCceeecCCc---cccCcccccccccccCC-CchH----HHHHHHHHh-cCCCeEEE
Q 011605 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET---RYKLPERLESYKLICES-KLKP----LYLVALLQS-LGEEKCIV 337 (481)
Q Consensus 267 ~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~k~----~~l~~~l~~-~~~~~~lV 337 (481)
.+++++|||++..........+..+........ .......+......... ..+. ..+...+.. ..+.++||
T Consensus 265 ~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iV 344 (563)
T 3i5x_A 265 IKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAII 344 (563)
T ss_dssp CEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEE
Confidence 589999999988777777766665543322111 11111111211222221 2222 222222222 45779999
Q ss_pred EecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChh
Q 011605 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (481)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~ 417 (481)
||+++..++.+++.|++....+..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.++.
T Consensus 345 F~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~ 424 (563)
T 3i5x_A 345 FAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELA 424 (563)
T ss_dssp ECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTT
T ss_pred EcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchh
Confidence 99999999999999988633348899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhc
Q 011605 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 418 ~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
.|+||+||+||.|+.|.|++++...+...++.+++...
T Consensus 425 ~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 425 NYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp HHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred hhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999987764
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.5e-47 Score=360.85 Aligned_cols=335 Identities=27% Similarity=0.438 Sum_probs=267.8
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
|++++.+.++.+||..|+++|.++++.++. ++++++.+|||+|||++++++++.. +.+++|++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHH
Confidence 678999999999999999999999999886 7899999999999999998887752 44899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcc
Q 011605 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~ 194 (481)
.|+.+.+++++...+..+..+.|+.........+ ..++|+|+||+.+.+.+.. ....
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~i~v~T~~~l~~~~~~-~~~~ 126 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV----------------------RNADIVVATPGRLLDLWSK-GVID 126 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH----------------------TTCSEEEECHHHHHHHHHT-TSCC
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc----------------------CCCCEEEECHHHHHHHHHc-CCcc
Confidence 9999999999888788898888887665443221 2469999999999988776 3355
Q ss_pred cCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeece
Q 011605 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 274 (481)
+.++++||+||+|++.++++...+..++..... ..+.+++||
T Consensus 127 ~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~SA 168 (337)
T 2z0m_A 127 LSSFEIVIIDEADLMFEMGFIDDIKIILAQTSN--------------------------------------RKITGLFSA 168 (337)
T ss_dssp GGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTT--------------------------------------CSEEEEEES
T ss_pred hhhCcEEEEEChHHhhccccHHHHHHHHhhCCc--------------------------------------ccEEEEEeC
Confidence 788999999999999888877777776655421 236778999
Q ss_pred eeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhh
Q 011605 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~ 354 (481)
|++..........+..+..+...... ..............+ .....+....++++||||++.++++.+++.|.
T Consensus 169 T~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~- 241 (337)
T 2z0m_A 169 TIPEEIRKVVKDFITNYEEIEACIGL----ANVEHKFVHVKDDWR--SKVQALRENKDKGVIVFVRTRNRVAKLVRLFD- 241 (337)
T ss_dssp CCCHHHHHHHHHHSCSCEEEECSGGG----GGEEEEEEECSSSSH--HHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT-
T ss_pred cCCHHHHHHHHHhcCCceeeeccccc----CCceEEEEEeChHHH--HHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-
Confidence 99877666665555554433222111 111111111122222 22355566678899999999999999998875
Q ss_pred ccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCcc
Q 011605 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~ 434 (481)
.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|+|+..|+||+||+||.|++|.
T Consensus 242 ------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~ 315 (337)
T 2z0m_A 242 ------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGE 315 (337)
T ss_dssp ------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEE
T ss_pred ------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCce
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecchHHHHHHHHHHhc
Q 011605 435 CFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~ 455 (481)
|++|+. .+...++++.+.++
T Consensus 316 ~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 316 AITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp EEEEES-SCHHHHHHHC----
T ss_pred EEEEEe-CcHHHHHHHHHHhc
Confidence 999999 88888888877664
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.8e-49 Score=394.11 Aligned_cols=361 Identities=24% Similarity=0.352 Sum_probs=160.3
Q ss_pred CCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccC
Q 011605 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~ 100 (481)
..+|+++. |++.+.+.+.++||..|+++|.++++.++.. .++++++.+|||+|||++|+++++..+..+ ..
T Consensus 91 ~~~f~~~~------l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-~~ 161 (479)
T 3fmp_B 91 VKSFEELR------LKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-NK 161 (479)
T ss_dssp CCCSGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTT-SC
T ss_pred cCCHHHcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhc-CC
Confidence 34555554 9999999999999999999999999998862 248899999999999999999998877654 34
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 101 CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
++++||++|+++|+.|+.+.++++.... ++.+....++...... ....++|+|+|
T Consensus 162 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~Ivv~T 217 (479)
T 3fmp_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGT 217 (479)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT------------------------CCCCCSEEEEC
T ss_pred CCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc------------------------ccCCCCEEEEC
Confidence 5689999999999999999999887654 5666666665542211 12346899999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEechhHhhH-HHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccc
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (481)
|+.+.+++.....+.+.++++||+||+|.+.+ .++...+..+.....
T Consensus 218 p~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~-------------------------------- 265 (479)
T 3fmp_B 218 PGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------------- 265 (479)
T ss_dssp HHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC--------------------------------
T ss_pred chHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC--------------------------------
Confidence 99999999776667788999999999999876 455555555544432
Q ss_pred cCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEE
Q 011605 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338 (481)
Q Consensus 259 ~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf 338 (481)
...+++++|||++..........+..+..+.............+.+........+...+..++.....+++|||
T Consensus 266 ------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF 339 (479)
T 3fmp_B 266 ------RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIF 339 (479)
T ss_dssp ------TTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------------------
T ss_pred ------ccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEE
Confidence 24489999999988777777777777766555443333322223333333445666677777777677899999
Q ss_pred ecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCC----
Q 011605 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA---- 414 (481)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~---- 414 (481)
|++...++.+++.|...+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 340 ~~s~~~~~~l~~~L~~~~---~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~ 416 (479)
T 3fmp_B 340 CHTRKTASWLAAELSKEG---HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG 416 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCcHHHHHHHHHHHHhCC---ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCcc
Confidence 999999999999998776 8899999999999999999999999999999999999999999999999999994
Q ss_pred --ChhHHHHHhhhcccCCCCccEEEEeecch-HHHHHHHHHHhc
Q 011605 415 --YIKTYIHRAGRTARAGQLGRCFTLLHKDE-VKRFKKLLQKAD 455 (481)
Q Consensus 415 --s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~-~~~~~~~~~~~~ 455 (481)
+...|+||+||+||.|+.|.|+++++..+ ...+..+.+.+.
T Consensus 417 ~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~ 460 (479)
T 3fmp_B 417 NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 460 (479)
T ss_dssp --------------------------------------------
T ss_pred CCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhC
Confidence 56799999999999999999999998765 555555555553
No 15
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.9e-46 Score=373.83 Aligned_cols=348 Identities=22% Similarity=0.298 Sum_probs=269.9
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccC
Q 011605 22 SLFEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (481)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~ 100 (481)
.+|++++ |++.+.+.+++ +||..|+++|.++++.++. ++++++.+|||+|||++|+++++..
T Consensus 2 ~~fe~l~------L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~~------- 64 (523)
T 1oyw_A 2 AQAEVLN------LESGAKQVLQETFGYQQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALLL------- 64 (523)
T ss_dssp CCCCCSS------HHHHHHHHHHHTTCCSSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHS-------
T ss_pred CChhhCC------CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHHHh-------
Confidence 4566665 99999999998 9999999999999999886 8899999999999999999887741
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCc
Q 011605 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~ 180 (481)
..++||++|+++|+.|+.+.++.+ ++.+..+.++........... ......++|+++||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~-----------------~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMT-----------------GCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHhcCCCCEEEECH
Confidence 247999999999999999999886 788888888876544322111 11224579999999
Q ss_pred hHHHHHHhcCCCcccCCccEEEEechhHhhHHH--HhhhHHHHHHhcccccccccccccccccccccchhhhhccccccc
Q 011605 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (481)
+++...... ..+...++++|||||||++.+++ |+..+..+......
T Consensus 124 e~l~~~~~~-~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~------------------------------- 171 (523)
T 1oyw_A 124 ERLMLDNFL-EHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR------------------------------- 171 (523)
T ss_dssp HHHTSTTHH-HHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH-------------------------------
T ss_pred HHHhChHHH-HHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh-------------------------------
Confidence 998532111 11234678999999999987655 33333222211110
Q ss_pred cCCCCCcceeeeeeceeeccCchhhh--cccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEE
Q 011605 259 FKDKPYPRLVKMVLSATLTQDPNKLA--QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336 (481)
Q Consensus 259 ~~~~~~~~~~~v~~sat~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~l 336 (481)
.+..+++++|||+........ ...+..+...........+ .........+...+...+....++++|
T Consensus 172 -----~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l------~~~v~~~~~~~~~l~~~l~~~~~~~~I 240 (523)
T 1oyw_A 172 -----FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNI------RYMLMEKFKPLDQLMRYVQEQRGKSGI 240 (523)
T ss_dssp -----CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTE------EEEEEECSSHHHHHHHHHHHTTTCCEE
T ss_pred -----CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCce------EEEEEeCCCHHHHHHHHHHhcCCCcEE
Confidence 134578999999986644322 2334455444333222211 112223355667788888877788999
Q ss_pred EEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCCh
Q 011605 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416 (481)
Q Consensus 337 Vf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~ 416 (481)
|||++++.++.+++.|.+.+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.|.
T Consensus 241 Vf~~sr~~~e~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~ 317 (523)
T 1oyw_A 241 IYCNSRAKVEDTAARLQSKG---ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 317 (523)
T ss_dssp EECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSH
T ss_pred EEeCCHHHHHHHHHHHHHCC---CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCH
Confidence 99999999999999999876 789999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHH
Q 011605 417 KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453 (481)
Q Consensus 417 ~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~ 453 (481)
.+|.|++||+||.|+.|.|+++++..|...++.+++.
T Consensus 318 ~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 318 ESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp HHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 9999999999999999999999999988887777764
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=6.7e-46 Score=374.59 Aligned_cols=343 Identities=20% Similarity=0.278 Sum_probs=260.6
Q ss_pred CCHHHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 35 l~~~l~~~~~~-~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
|++.+.+.|++ +||..|+++|.++++.++. ++++++.+|||+|||++|++|++. ...++||++|+++|
T Consensus 28 l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~-------~~g~~lVisP~~~L 96 (591)
T 2v1x_A 28 WSGKVKDILQNVFKLEKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC-------SDGFTLVICPLISL 96 (591)
T ss_dssp THHHHHHHHHHTSCCCSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT-------SSSEEEEECSCHHH
T ss_pred CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH-------cCCcEEEEeCHHHH
Confidence 88999999998 7999999999999999987 899999999999999999998874 23489999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHH---HHhcC
Q 011605 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD---HINAT 190 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~---~l~~~ 190 (481)
+.|+.+.+..+ |+.+..+.|+.........+.. .......++|+|+||+++.. ++...
T Consensus 97 ~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~---------------l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l 157 (591)
T 2v1x_A 97 MEDQLMVLKQL----GISATMLNASSSKEHVKWVHAE---------------MVNKNSELKLIYVTPEKIAKSKMFMSRL 157 (591)
T ss_dssp HHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHH---------------HHCTTCCCCEEEECHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHH---------------hhcccCCCCEEEEChhHhhccHHHHHHH
Confidence 99999999987 7888899998876544322110 00023467999999998742 22110
Q ss_pred -CCcccCCccEEEEechhHhhHHH--HhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcce
Q 011605 191 -RGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (481)
Q Consensus 191 -~~~~~~~~~~iVvDE~H~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (481)
....+..++++||||||++.+++ |...+..+..... ..+..
T Consensus 158 ~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~------------------------------------~~~~~ 201 (591)
T 2v1x_A 158 EKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKR------------------------------------QFPNA 201 (591)
T ss_dssp HHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHH------------------------------------HCTTS
T ss_pred HhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHH------------------------------------hCCCC
Confidence 11346689999999999987665 3333222110000 01345
Q ss_pred eeeeeceeeccCchhhhcccc--cCCceeecCCccccCcccccccccccCCC---chHHHHHHHHHh-cCCCeEEEEecc
Q 011605 268 VKMVLSATLTQDPNKLAQLDL--HHPLFLTTGETRYKLPERLESYKLICESK---LKPLYLVALLQS-LGEEKCIVFTSS 341 (481)
Q Consensus 268 ~~v~~sat~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~-~~~~~~lVf~~s 341 (481)
+++++|||++......+...+ ..+..+........+ .+....... .+...+..++.. ..++++||||++
T Consensus 202 ~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl-----~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~s 276 (591)
T 2v1x_A 202 SLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNL-----YYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFS 276 (591)
T ss_dssp EEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTE-----EEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSS
T ss_pred cEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCccc-----EEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCc
Confidence 899999999876544433333 233333332222111 112222222 233455555543 357899999999
Q ss_pred hhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHH
Q 011605 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421 (481)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q 421 (481)
++.++.+++.|...+ ..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.|...|+|
T Consensus 277 r~~~e~la~~L~~~g---~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Q 353 (591)
T 2v1x_A 277 QKDSEQVTVSLQNLG---IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQ 353 (591)
T ss_dssp HHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHCC---CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHH
Confidence 999999999999876 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCccEEEEeecchHHHHHHHH
Q 011605 422 RAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451 (481)
Q Consensus 422 ~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 451 (481)
++||+||.|+.|.|++++...|...+..++
T Consensus 354 r~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 354 ESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp HHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred HhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999998888777665
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-47 Score=380.77 Aligned_cols=354 Identities=22% Similarity=0.319 Sum_probs=241.9
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
++++.+.+.+.+.||..|+++|.+++..++.. .++++++.+|||+|||++++++++..+..+ ..+.++||++|+++|
T Consensus 125 ~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~-~~~~~vLvl~P~~~L 201 (508)
T 3fho_A 125 XXXXXXXXXXXXXXXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDAS-VPKPQAICLAPSREL 201 (508)
T ss_dssp --------------CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTT-CCSCCEEEECSCHHH
T ss_pred ccccccccccccccccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhC-CCCceEEEEECcHHH
Confidence 57888999999999999999999999998873 238899999999999999999998877664 345689999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCc
Q 011605 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
+.|+.+.+++++...++.+....++..... ...+++|+|+||+.+.+.+.. ...
T Consensus 202 ~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~Ivv~T~~~l~~~l~~-~~~ 255 (508)
T 3fho_A 202 ARQIMDVVTEMGKYTEVKTAFGIKDSVPKG-------------------------AKIDAQIVIGTPGTVMDLMKR-RQL 255 (508)
T ss_dssp HHHHHHHHHHHSTTSSCCEEC-----------------------------------CCCCSEEEECHHHHHHHHHT-TCS
T ss_pred HHHHHHHHHHhCCccCeeEEEEeCCccccc-------------------------ccCCCCEEEECHHHHHHHHHc-CCc
Confidence 999999999998766655555444332111 123579999999999998876 335
Q ss_pred ccCCccEEEEechhHhhH-HHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeee
Q 011605 194 TLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (481)
.+..+++||+||+|++.+ .++...+..+..... +..+++++
T Consensus 256 ~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~l 297 (508)
T 3fho_A 256 DARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP--------------------------------------RNTQIVLF 297 (508)
T ss_dssp CCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSC--------------------------------------TTCEEEEE
T ss_pred cccCCCEEEEechhhhcccCCcHHHHHHHHHhCC--------------------------------------cCCeEEEE
Confidence 688899999999999876 556666666655543 23478999
Q ss_pred ceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHH
Q 011605 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (481)
Q Consensus 273 sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (481)
|||+..............+..+...............+........+...+..++.....+++||||+++.+++.+++.|
T Consensus 298 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 298 SATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp ESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHH
T ss_pred eCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 99998777776666666555443333332222222223333344556677777777777899999999999999999999
Q ss_pred hhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCC------CChhHHHHHhhhc
Q 011605 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRT 426 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~------~s~~~~~Q~~GR~ 426 (481)
.+.+ ..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.| .++..|+||+||+
T Consensus 378 ~~~~---~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRa 454 (508)
T 3fho_A 378 TADG---HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRT 454 (508)
T ss_dssp TTTT---CCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCC
T ss_pred HhCC---CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhc
Confidence 8766 789999999999999999999999999999999999999999999999999999 7899999999999
Q ss_pred ccCCCCccEEEEeec-chHHHHHHHHHHhcCC
Q 011605 427 ARAGQLGRCFTLLHK-DEVKRFKKLLQKADND 457 (481)
Q Consensus 427 ~R~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 457 (481)
||.|+.|.|++++.. .+...+..+.+.+...
T Consensus 455 gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~ 486 (508)
T 3fho_A 455 GRFGRVGVSINFVHDKKSWEEMNAIQEYFQRP 486 (508)
T ss_dssp C-----CEEEEEECTTTSSSSHHHHHHHSCCC
T ss_pred CCCCCCcEEEEEEeChHHHHHHHHHHHHHCCC
Confidence 999999999999985 4556677777776543
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.1e-43 Score=344.13 Aligned_cols=341 Identities=18% Similarity=0.266 Sum_probs=245.3
Q ss_pred HHHHHHHH-CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHH
Q 011605 38 RLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 38 ~l~~~~~~-~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (481)
++.+.+++ +|| .|+++|.++++.++. ++++++.+|||+|||++++++++..+. .+++++|++||++|+.|
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~~----~~~~~lil~Pt~~L~~q 79 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQ 79 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHH
Confidence 44555554 677 899999999999876 789999999999999988888776542 35589999999999999
Q ss_pred HHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcC-CCcEEEeCchHHHHHHhcCCCccc
Q 011605 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTL 195 (481)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~T~~~l~~~l~~~~~~~~ 195 (481)
+.+.++.++. .++++..++|+.......... ..+.. .++|+|+||+.+.+.+.. ..+
T Consensus 80 ~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~------------------~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~ 137 (414)
T 3oiy_A 80 TLERLQKLAD-EKVKIFGFYSSMKKEEKEKFE------------------KSFEEDDYHILVFSTQFVSKNREK---LSQ 137 (414)
T ss_dssp HHHHHHHHCC-SSCCEEECCTTSCHHHHHHHH------------------HHHHHTCCSEEEEEHHHHHHCHHH---HTT
T ss_pred HHHHHHHHcc-CCceEEEEECCCChhhHHHHH------------------HHhhcCCCCEEEECHHHHHHHHHH---hcc
Confidence 9999999987 789999999998864432211 12223 379999999999887765 556
Q ss_pred CCccEEEEechhHhhHH-----------HHhhh-HHHHHHhcccccccccccccccccccccchhhhhccccccccCCCC
Q 011605 196 EHLCYLVVDETDRLLRE-----------AYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263 (481)
Q Consensus 196 ~~~~~iVvDE~H~l~~~-----------~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (481)
.++++||+||||++..+ +|... +..++..+... ........
T Consensus 138 ~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~---------------------------~~~~~l~~ 190 (414)
T 3oiy_A 138 KRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQG---------------------------KIYERPKN 190 (414)
T ss_dssp CCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHT---------------------------CCCCCCTT
T ss_pred ccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccc---------------------------hhhhhccc
Confidence 78999999999987653 23333 44444443210 00000000
Q ss_pred Ccceeeeeeceee-ccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecch
Q 011605 264 YPRLVKMVLSATL-TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 342 (481)
Q Consensus 264 ~~~~~~v~~sat~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~ 342 (481)
.+..+.+++|||+ +............. +...... .....+...... ..+...+..++... ++++||||+++
T Consensus 191 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~i~~~~~~---~~~~~~l~~~l~~~-~~~~lVF~~~~ 262 (414)
T 3oiy_A 191 LKPGILVVSSATAKPRGIRPLLFRDLLN---FTVGRLV-SVARNITHVRIS---SRSKEKLVELLEIF-RDGILIFAQTE 262 (414)
T ss_dssp CCCCEEEESSCCSSCCSSTTHHHHHHHS---CCSSCCC-CCCCSEEEEEES---SCCHHHHHHHHHHH-CSSEEEEESSH
T ss_pred CCCceEEEEecCCCcchhHHHHHHHhhc---cCcCccc-cccccchheeec---cCHHHHHHHHHHHc-CCCEEEEECCH
Confidence 1345899999994 43333222111111 1111111 111112222211 24566677777764 58999999999
Q ss_pred hhHHHHHHHHhhccccceeEE-EcccccChHHHHHHHHHHhcCCceEEEE----ccccccCCCCCC-CcEEEEcCCC--C
Q 011605 343 ESTHRLCTLLNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKP--A 414 (481)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~iLv~----t~~l~~Gvdl~~-~~~Vi~~~~~--~ 414 (481)
..++.+++.|+..+ ..+. .+||. +|. ++.|++|+.+|||| |+++++|+|+|+ +++||+++.| .
T Consensus 263 ~~~~~l~~~L~~~~---~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~ 333 (414)
T 3oiy_A 263 EEGKELYEYLKRFK---FNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGP 333 (414)
T ss_dssp HHHHHHHHHHHHTT---CCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTT
T ss_pred HHHHHHHHHHHHcC---CceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCC
Confidence 99999999999876 7787 88884 344 99999999999999 999999999999 9999999999 9
Q ss_pred ChhHHHHHhhhcccCC----CCccEEEEeecchHHHHHHHHHHhc
Q 011605 415 YIKTYIHRAGRTARAG----QLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 415 s~~~~~Q~~GR~~R~~----~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
+...|+||+||+||.| +.|.+++++ .+...+..+.+.+.
T Consensus 334 ~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 334 DVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp CHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred CHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9999999999999987 468898888 55555666665554
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.8e-41 Score=354.02 Aligned_cols=341 Identities=21% Similarity=0.259 Sum_probs=255.9
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCc
Q 011605 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102 (481)
Q Consensus 23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~ 102 (481)
+|++++ |++.+.+.++++||..|+++|.++++.++. .++++++++|||+|||+++.++++..+... +.
T Consensus 2 ~f~~l~------l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~---~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~ 69 (720)
T 2zj8_A 2 RVDELR------VDERIKSTLKERGIESFYPPQAEALKSGIL---EGKNALISIPTASGKTLIAEIAMVHRILTQ---GG 69 (720)
T ss_dssp BGGGCC------SCHHHHHHHHHTTCCBCCHHHHHHHTTTGG---GTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CS
T ss_pred cHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc---CCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CC
Confidence 356664 999999999999999999999999887322 388999999999999999999998877643 35
Q ss_pred cEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchH
Q 011605 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (481)
Q Consensus 103 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~ 182 (481)
+++|++|+++|+.|+++.++++.. .|+++..++|+...... ...+++|+|+||++
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~ 124 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE------------------------WLGKYDIIIATAEK 124 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG------------------------GGGGCSEEEECHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc------------------------ccCCCCEEEECHHH
Confidence 899999999999999999965544 48899999997653221 01356999999999
Q ss_pred HHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCC
Q 011605 183 LMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (481)
Q Consensus 183 l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (481)
+...+... ...++++++||+||+|.+.++.++..++.++.++..
T Consensus 125 l~~~~~~~-~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~----------------------------------- 168 (720)
T 2zj8_A 125 FDSLLRHG-SSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLG----------------------------------- 168 (720)
T ss_dssp HHHHHHHT-CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT-----------------------------------
T ss_pred HHHHHHcC-hhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc-----------------------------------
Confidence 98887763 344788999999999999877788888888877641
Q ss_pred CCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccc--cc-ccccc----CCCchHHHHHHHHHhcCCCeE
Q 011605 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--ES-YKLIC----ESKLKPLYLVALLQSLGEEKC 335 (481)
Q Consensus 263 ~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~----~~~~k~~~l~~~l~~~~~~~~ 335 (481)
..+++++|||+.+. ..+.. ++.... +............. .. ..... ....+...+.+.+. .++++
T Consensus 169 ---~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 240 (720)
T 2zj8_A 169 ---KAQIIGLSATIGNP-EELAE-WLNAEL-IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGA 240 (720)
T ss_dssp ---TBEEEEEECCCSCH-HHHHH-HTTEEE-EECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCE
T ss_pred ---CCeEEEEcCCcCCH-HHHHH-HhCCcc-cCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCE
Confidence 23799999998642 22221 111111 11111100000000 00 00000 02333444555444 36899
Q ss_pred EEEecchhhHHHHHHHHhhcccc------------------------------ceeEEEcccccChHHHHHHHHHHhcCC
Q 011605 336 IVFTSSVESTHRLCTLLNHFGEL------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGK 385 (481)
Q Consensus 336 lVf~~s~~~~~~l~~~L~~~~~~------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~ 385 (481)
||||+++++++.++..|.+.... ..++..+||+++..+|..+++.|++|.
T Consensus 241 LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~ 320 (720)
T 2zj8_A 241 LIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGI 320 (720)
T ss_dssp EEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred EEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCC
Confidence 99999999999999998753110 124889999999999999999999999
Q ss_pred ceEEEEccccccCCCCCCCcEEEE----cC----CCCChhHHHHHhhhcccCCC--CccEEEEeecchH
Q 011605 386 IQVLVSSDAMTRGMDVEGVNNVVN----YD----KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEV 444 (481)
Q Consensus 386 ~~iLv~t~~l~~Gvdl~~~~~Vi~----~~----~~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~~ 444 (481)
.+|||||+++++|+|+|++++||+ |+ .|.+..+|.||+||+||.|. .|.|++++...+.
T Consensus 321 ~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 389 (720)
T 2zj8_A 321 IKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDP 389 (720)
T ss_dssp SCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCH
T ss_pred CeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccH
Confidence 999999999999999999999998 55 57889999999999999885 5899999988773
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.8e-41 Score=349.92 Aligned_cols=342 Identities=21% Similarity=0.277 Sum_probs=252.4
Q ss_pred CCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhcc
Q 011605 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~ 99 (481)
...+|++++ |++.+.+.++.+||..|+++|.++++.++. .++++++++|||+|||+++.++++..+...
T Consensus 6 ~~~~~~~l~------l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~---~~~~~lv~apTGsGKT~~~~l~il~~~~~~-- 74 (715)
T 2va8_A 6 EWMPIEDLK------LPSNVIEIIKKRGIKKLNPPQTEAVKKGLL---EGNRLLLTSPTGSGKTLIAEMGIISFLLKN-- 74 (715)
T ss_dssp CCCBGGGSS------SCHHHHHHHHTTSCCBCCHHHHHHHHTTTT---TTCCEEEECCTTSCHHHHHHHHHHHHHHHS--
T ss_pred ccCcHHHcC------CCHHHHHHHHhCCCCCCCHHHHHHHHHHhc---CCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--
Confidence 445677775 999999999999999999999999887433 488999999999999999999998877643
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
+.+++|++|+++|+.|+.+.++.+ ...|+++...+|+...... . ..+++|+|+|
T Consensus 75 -~~~il~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~-----------------------~-~~~~~Iiv~T 128 (715)
T 2va8_A 75 -GGKAIYVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDA-----------------------W-LKNYDIIITT 128 (715)
T ss_dssp -CSEEEEECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCG-----------------------G-GGGCSEEEEC
T ss_pred -CCeEEEEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchh-----------------------h-cCCCCEEEEc
Confidence 458999999999999999999644 3448899999987653321 0 1256999999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccccccc
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
|+++...+.... ..++++++||+||+|.+.+..++..++.++.+..
T Consensus 129 pe~l~~~~~~~~-~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~--------------------------------- 174 (715)
T 2va8_A 129 YEKLDSLWRHRP-EWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK--------------------------------- 174 (715)
T ss_dssp HHHHHHHHHHCC-GGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHhCCh-hHhhccCEEEEechhhcCCcccchHHHHHHHhcc---------------------------------
Confidence 999999887632 4478899999999999877677777877776653
Q ss_pred CCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccc----------cc-cc-----cccCCCchHHHH
Q 011605 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL----------ES-YK-----LICESKLKPLYL 323 (481)
Q Consensus 260 ~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~-----~~~~~~~k~~~l 323 (481)
..+++++|||+.+. ..+.. ++..+. +............. .. +. ...........+
T Consensus 175 ------~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (715)
T 2va8_A 175 ------RRNLLALSATISNY-KQIAK-WLGAEP-VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYT 245 (715)
T ss_dssp ------TSEEEEEESCCTTH-HHHHH-HHTCEE-EECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHH
T ss_pred ------cCcEEEEcCCCCCH-HHHHH-HhCCCc-cCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHH
Confidence 23799999999642 22211 111111 11110000000000 00 00 000012233333
Q ss_pred HHHHHhcCCCeEEEEecchhhHHHHHHHHhhcccc---------------------------------ceeEEEcccccC
Q 011605 324 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL---------------------------------RIKIKEYSGLQR 370 (481)
Q Consensus 324 ~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~---------------------------------~~~~~~~~~~~~ 370 (481)
.+.+. .++++||||+++++++.+++.|.+.... ..++..+||+++
T Consensus 246 ~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~ 323 (715)
T 2va8_A 246 LDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLS 323 (715)
T ss_dssp HHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCC
Confidence 43333 4689999999999999999999864211 124889999999
Q ss_pred hHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEE----cC-------CCCChhHHHHHhhhcccCCC--CccEEE
Q 011605 371 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD-------KPAYIKTYIHRAGRTARAGQ--LGRCFT 437 (481)
Q Consensus 371 ~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~----~~-------~~~s~~~~~Q~~GR~~R~~~--~g~~~~ 437 (481)
..+|..+++.|++|..+|||||+++++|+|+|++++||+ |+ .|.|..+|.||+||+||.|. .|.|++
T Consensus 324 ~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 403 (715)
T 2va8_A 324 KALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIV 403 (715)
T ss_dssp HHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEE
Confidence 999999999999999999999999999999999999998 88 78899999999999999885 589999
Q ss_pred Eeecch
Q 011605 438 LLHKDE 443 (481)
Q Consensus 438 ~~~~~~ 443 (481)
++...+
T Consensus 404 l~~~~~ 409 (715)
T 2va8_A 404 VVRDKE 409 (715)
T ss_dssp ECSCGG
T ss_pred EeCCch
Confidence 987765
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.9e-41 Score=352.92 Aligned_cols=336 Identities=24% Similarity=0.299 Sum_probs=250.4
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
|++.+.+.++++||..|+++|.++++.+.. ++++++++|||+|||+++.++++..+.. +.+++|++|+++|+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~l~i~P~r~La 81 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPLRALA 81 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESSHHHH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHhC----CCcEEEEcCCccHHHHHHHHHHHHHHHh----CCcEEEEeCcHHHH
Confidence 789999999999999999999999998664 8899999999999999999999887664 34899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcc
Q 011605 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~ 194 (481)
.|+.+.++.+. ..|+++...+|+...... ...+++|+|+||+++...+.... ..
T Consensus 82 ~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~l~~~~-~~ 135 (702)
T 2p6r_A 82 GEKYESFKKWE-KIGLRIGISTGDYESRDE------------------------HLGDCDIIVTTSEKADSLIRNRA-SW 135 (702)
T ss_dssp HHHHHHHTTTT-TTTCCEEEECSSCBCCSS------------------------CSTTCSEEEEEHHHHHHHHHTTC-SG
T ss_pred HHHHHHHHHHH-hcCCEEEEEeCCCCcchh------------------------hccCCCEEEECHHHHHHHHHcCh-hH
Confidence 99999996543 348899999997653221 11357999999999999887632 44
Q ss_pred cCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeece
Q 011605 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 274 (481)
++++++||+||+|.+.+++++..++.++.++.... +..+++++||
T Consensus 136 l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~-----------------------------------~~~~ii~lSA 180 (702)
T 2p6r_A 136 IKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN-----------------------------------KALRVIGLSA 180 (702)
T ss_dssp GGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC-----------------------------------TTCEEEEEEC
T ss_pred HhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcC-----------------------------------cCceEEEECC
Confidence 78899999999999988778888888877664221 3458999999
Q ss_pred eeccCchhhhcccccCCceeecCCccccCcccc--c-ccccccC------CCchHHHHHHHHHhcCCCeEEEEecchhhH
Q 011605 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--E-SYKLICE------SKLKPLYLVALLQSLGEEKCIVFTSSVEST 345 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~------~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~ 345 (481)
|+.+ ...+.. ++..+. +............. . ....... ...+...+.+.+. .++++||||++++++
T Consensus 181 Tl~n-~~~~~~-~l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~ 255 (702)
T 2p6r_A 181 TAPN-VTEIAE-WLDADY-YVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGA 255 (702)
T ss_dssp CCTT-HHHHHH-HTTCEE-EECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHH
T ss_pred CcCC-HHHHHH-HhCCCc-ccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHH
Confidence 9874 222222 222111 11111111110000 0 0000000 0013444444443 478999999999999
Q ss_pred HHHHHHHhhccc---------------------------cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccC
Q 011605 346 HRLCTLLNHFGE---------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398 (481)
Q Consensus 346 ~~l~~~L~~~~~---------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~G 398 (481)
+.+++.|.+... .+.++..+||+++..+|..+++.|++|+.+|||||+++++|
T Consensus 256 ~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~G 335 (702)
T 2p6r_A 256 EKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAG 335 (702)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSS
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhcc
Confidence 999999875310 01357889999999999999999999999999999999999
Q ss_pred CCCCCCcEEEE----cC---CCCChhHHHHHhhhcccCCC--CccEEEEeecchH
Q 011605 399 MDVEGVNNVVN----YD---KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEV 444 (481)
Q Consensus 399 vdl~~~~~Vi~----~~---~~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~~ 444 (481)
+|+|++++||+ |+ .|.|..+|.||+||+||.|. .|.|++++...+.
T Consensus 336 idip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 336 VNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp SCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred CCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 99999999998 54 68899999999999999885 5899999988774
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.2e-41 Score=342.46 Aligned_cols=338 Identities=19% Similarity=0.201 Sum_probs=195.9
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhcc-CCccEEEEcccHHHHHHHHHHHHHh
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
++..+|+++|.++++.++. ++++++.+|||+|||++++++++..+..... .+.++||++|+++|+.||.+.+.++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 3 METKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp -----CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3455899999999999886 7899999999999999999999888876431 1568999999999999999999999
Q ss_pred ccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEe
Q 011605 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (481)
Q Consensus 125 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvD 204 (481)
+...++.+..++|+......... +..+++|+|+||+.+.+.+.......+..+++||+|
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViD 137 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVEK---------------------VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 137 (556)
T ss_dssp HGGGTCCEEECCCC-----CHHH---------------------HHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEE
T ss_pred hcccCceEEEEeCCCCcchhHHH---------------------hhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEE
Confidence 98888999999998754433221 223469999999999998877443368899999999
Q ss_pred chhHhhHHHHhhhH-HHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCch--
Q 011605 205 ETDRLLREAYQAWL-PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN-- 281 (481)
Q Consensus 205 E~H~l~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~-- 281 (481)
|||++.+++....+ ..+....... ..+..+.+++|||+.....
T Consensus 138 Eah~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~l~lSAT~~~~~~~~ 183 (556)
T 4a2p_A 138 ECHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNAKN 183 (556)
T ss_dssp TGGGCSTTSHHHHHHHHHHHHHHCC-------------------------------------CCEEEEEESCCCCTTCSS
T ss_pred CCcccCCcchHHHHHHHHHHhhhcc----------------------------------cCCCCeEEEEeCCcccCchhh
Confidence 99998765432222 1111110000 0134578999999853210
Q ss_pred --hhh-------cc------------------cccCCceeecCCccccCcc-----------------------------
Q 011605 282 --KLA-------QL------------------DLHHPLFLTTGETRYKLPE----------------------------- 305 (481)
Q Consensus 282 --~~~-------~~------------------~~~~~~~~~~~~~~~~~~~----------------------------- 305 (481)
.+. .. +...+......... ....
T Consensus 184 ~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (556)
T 4a2p_A 184 IEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR-RIHNPFAAIISNLMSETEALMRTIYSVDTLSQN 262 (556)
T ss_dssp HHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCC-CSCCHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCC-CcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 000 00 00000000000000 0000
Q ss_pred ------------cccc----------------------------------------------------------------
Q 011605 306 ------------RLES---------------------------------------------------------------- 309 (481)
Q Consensus 306 ------------~~~~---------------------------------------------------------------- 309 (481)
....
T Consensus 263 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 342 (556)
T 4a2p_A 263 SKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPY 342 (556)
T ss_dssp --CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred cccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 0000
Q ss_pred ---------------------cccccCCCchHHHHHHHHHh----cCCCeEEEEecchhhHHHHHHHHhhccc-------
Q 011605 310 ---------------------YKLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE------- 357 (481)
Q Consensus 310 ---------------------~~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~------- 357 (481)
.........|...+.+++.. ..++++||||+++..++.+++.|.+.+.
T Consensus 343 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~ 422 (556)
T 4a2p_A 343 TELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPG 422 (556)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEE
T ss_pred CHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeee
Confidence 00000124456666666644 4578999999999999999999987521
Q ss_pred --cceeEEEcccccChHHHHHHHHHHhc-CCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCcc
Q 011605 358 --LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (481)
Q Consensus 358 --~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~ 434 (481)
.+.....+||+|+..+|.++++.|++ |+.+|||||+++++|+|+|++++||+|++|+|+..|+||+|| ||. +.|.
T Consensus 423 ~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~ 500 (556)
T 4a2p_A 423 VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSK 500 (556)
T ss_dssp C------------------------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CC
T ss_pred EEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCce
Confidence 12445566888999999999999999 999999999999999999999999999999999999999999 998 7899
Q ss_pred EEEEeecchHH
Q 011605 435 CFTLLHKDEVK 445 (481)
Q Consensus 435 ~~~~~~~~~~~ 445 (481)
+++++.+.+.+
T Consensus 501 ~~~l~~~~~~~ 511 (556)
T 4a2p_A 501 CILVTSKTEVV 511 (556)
T ss_dssp EEEEESCHHHH
T ss_pred EEEEEeCcchH
Confidence 99999987664
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=7.8e-41 Score=349.59 Aligned_cols=349 Identities=17% Similarity=0.149 Sum_probs=210.4
Q ss_pred HHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhcc-CCccEEEEcccHHHHHHHH
Q 011605 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVK 118 (481)
Q Consensus 40 ~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~-~~~~~lil~Pt~~L~~q~~ 118 (481)
...+..+||..|+++|.++++.++. ++++++++|||+|||++++++++..+...+. .+.++||++||++|+.||.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHH
Confidence 3456789999999999999999886 8899999999999999999999988776431 2358999999999999999
Q ss_pred HHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCc
Q 011605 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL 198 (481)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~ 198 (481)
+.+++++...++.+..++|+........ .+..+++|+|+||+.+.+.+.......+.++
T Consensus 79 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~---------------------~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 79 SVFSKYFERHGYRVTGISGATAENVPVE---------------------QIVENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp HHHHHHTTTTTCCEEEECSSSCSSSCHH---------------------HHHHTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred HHHHHHhccCCceEEEEeCCccccccHH---------------------HhccCCCEEEECHHHHHHHHhcCcccccccc
Confidence 9999998877899999998875432211 1223579999999999999887443268889
Q ss_pred cEEEEechhHhhHHHH-hhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeec
Q 011605 199 CYLVVDETDRLLREAY-QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277 (481)
Q Consensus 199 ~~iVvDE~H~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~ 277 (481)
++|||||||++..... ...+..++.... .....+..+++++|||+.
T Consensus 138 ~~vViDEaH~~~~~~~~~~i~~~~l~~~~---------------------------------~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 138 TLMIFDECHNTSKQHPYNMIMFNYLDQKL---------------------------------GGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp SEEEEETGGGCSTTCHHHHHHHHHHHHHH---------------------------------TTCCSCCCEEEEEESCCC
T ss_pred cEEEEeCCCcccCcccHHHHHHHHHHHhh---------------------------------cccCCCCCeEEEEeCccc
Confidence 9999999999754321 111111111100 000013346777888875
Q ss_pred cCc--------hhh----------------------------------------------------------hcccccCC
Q 011605 278 QDP--------NKL----------------------------------------------------------AQLDLHHP 291 (481)
Q Consensus 278 ~~~--------~~~----------------------------------------------------------~~~~~~~~ 291 (481)
... ... ....+.++
T Consensus 185 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~ 264 (696)
T 2ykg_A 185 VGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDL 264 (696)
T ss_dssp CSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTG
T ss_pred cCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 210 000 00000000
Q ss_pred ceeecCCccccC--------------------------------------------------------------------
Q 011605 292 LFLTTGETRYKL-------------------------------------------------------------------- 303 (481)
Q Consensus 292 ~~~~~~~~~~~~-------------------------------------------------------------------- 303 (481)
..+.........
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 344 (696)
T 2ykg_A 265 ENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSN 344 (696)
T ss_dssp GGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHH
Confidence 000000000000
Q ss_pred -----ccccccccc----------------ccCCCchHHHHHHHHHhc----CCCeEEEEecchhhHHHHHHHHhhccc-
Q 011605 304 -----PERLESYKL----------------ICESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGE- 357 (481)
Q Consensus 304 -----~~~~~~~~~----------------~~~~~~k~~~l~~~l~~~----~~~~~lVf~~s~~~~~~l~~~L~~~~~- 357 (481)
......... ......|...+..++... .++++||||+++..++.+++.|+..+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~ 424 (696)
T 2ykg_A 345 VRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL 424 (696)
T ss_dssp HHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTC
T ss_pred HhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCc
Confidence 000000000 001345667777777665 567999999999999999999987642
Q ss_pred cceeEEEc--------ccccChHHHHHHHHHHhc-CCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhccc
Q 011605 358 LRIKIKEY--------SGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (481)
Q Consensus 358 ~~~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R 428 (481)
..+.+..+ |++|+..+|.++++.|++ |+.+|||||+++++|+|+|++++||+|++|+++.+|+||+|| ||
T Consensus 425 ~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR 503 (696)
T 2ykg_A 425 SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 503 (696)
T ss_dssp CSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC---------
T ss_pred cccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-Cc
Confidence 11355555 669999999999999998 999999999999999999999999999999999999999999 99
Q ss_pred CCCCccEEEEeecchHHHHH
Q 011605 429 AGQLGRCFTLLHKDEVKRFK 448 (481)
Q Consensus 429 ~~~~g~~~~~~~~~~~~~~~ 448 (481)
. +.|.|++++...+.....
T Consensus 504 ~-~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 504 A-RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp --CCCEEEEEESCHHHHHHH
T ss_pred C-CCceEEEEecCCCHHHHH
Confidence 8 789999999988774443
No 24
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-40 Score=350.88 Aligned_cols=338 Identities=18% Similarity=0.184 Sum_probs=243.6
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
+++.+...+...++..|+++|.++++.+.. ++++++++|||+|||+++.++++..+.. +.+++|++|+++|+
T Consensus 169 l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~----g~dvLV~ApTGSGKTlva~l~i~~~l~~----g~rvlvl~PtraLa 240 (1108)
T 3l9o_A 169 IAEHKRVNEARTYPFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALS 240 (1108)
T ss_dssp TTTTCCCSCSSCCSSCCCHHHHHHHHHHTT----TCCEEEECCSSSHHHHHHHHHHHHHHHT----TCEEEEEESSHHHH
T ss_pred CChhhhHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEcCcHHHH
Confidence 333333333444555899999999998765 8999999999999999999999887754 34899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcc
Q 011605 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~ 194 (481)
.|+++.+.+++. .++.++|+... ..+++|+|+||+.|.+.+.... ..
T Consensus 241 ~Q~~~~l~~~~~----~VglltGd~~~----------------------------~~~~~IlV~Tpe~L~~~L~~~~-~~ 287 (1108)
T 3l9o_A 241 NQKYRELLAEFG----DVGLMTGDITI----------------------------NPDAGCLVMTTEILRSMLYRGS-EV 287 (1108)
T ss_dssp HHHHHHHHHHTS----SEEEECSSCBC----------------------------CCSCSEEEEEHHHHHHHHHHCS-SH
T ss_pred HHHHHHHHHHhC----CccEEeCcccc----------------------------CCCCCEEEeChHHHHHHHHcCc-cc
Confidence 999999998864 56677887652 2346999999999999887743 45
Q ss_pred cCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeece
Q 011605 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 274 (481)
+.++++|||||||.+.+++++..+..++..+. +..+++++||
T Consensus 288 l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~--------------------------------------~~~qvl~lSA 329 (1108)
T 3l9o_A 288 MREVAWVIFDEVHYMRDKERGVVWEETIILLP--------------------------------------DKVRYVFLSA 329 (1108)
T ss_dssp HHHEEEEEEETGGGTTSHHHHHHHHHHHHHSC--------------------------------------TTSEEEEEEC
T ss_pred cccCCEEEEhhhhhccccchHHHHHHHHHhcC--------------------------------------CCceEEEEcC
Confidence 77899999999999999999988888887663 2448999999
Q ss_pred eeccCch--hhhcccccCCceeecCC-ccccCcccc-----cc-ccccc------------------C------------
Q 011605 275 TLTQDPN--KLAQLDLHHPLFLTTGE-TRYKLPERL-----ES-YKLIC------------------E------------ 315 (481)
Q Consensus 275 t~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~-~~~~~------------------~------------ 315 (481)
|++.... .+.......+..+.... ........+ .. +.... .
T Consensus 330 Tipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 409 (1108)
T 3l9o_A 330 TIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSR 409 (1108)
T ss_dssp SCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--------------
T ss_pred CCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccc
Confidence 9876533 33333333222211111 110000000 00 00000 0
Q ss_pred ------------C---CchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhcccc----------------------
Q 011605 316 ------------S---KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL---------------------- 358 (481)
Q Consensus 316 ------------~---~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~---------------------- 358 (481)
. ..+...+...+......++||||+++..|+.++..|...+..
T Consensus 410 ~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~ 489 (1108)
T 3l9o_A 410 GKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPET 489 (1108)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchh
Confidence 0 112223344444456679999999999999999998653210
Q ss_pred --------------ceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCC--------CCCh
Q 011605 359 --------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK--------PAYI 416 (481)
Q Consensus 359 --------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~--------~~s~ 416 (481)
..++..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||++.. +.|+
T Consensus 490 d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~ 569 (1108)
T 3l9o_A 490 DRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 569 (1108)
T ss_dssp TTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCH
T ss_pred hhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCH
Confidence 112789999999999999999999999999999999999999999999997654 3467
Q ss_pred hHHHHHhhhcccCC--CCccEEEEeecch-HHHHHHHH
Q 011605 417 KTYIHRAGRTARAG--QLGRCFTLLHKDE-VKRFKKLL 451 (481)
Q Consensus 417 ~~~~Q~~GR~~R~~--~~g~~~~~~~~~~-~~~~~~~~ 451 (481)
.+|+||+||+||.| ..|.|++++.... ...+..++
T Consensus 570 ~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~ 607 (1108)
T 3l9o_A 570 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 607 (1108)
T ss_dssp HHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHH
T ss_pred HHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHh
Confidence 78999999999999 4588888887763 34445554
No 25
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.1e-40 Score=335.80 Aligned_cols=339 Identities=18% Similarity=0.196 Sum_probs=221.4
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc-cCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
.|+++|.++++.++. ++++++.+|||+|||++++++++..+.... ..+.++||++|+++|+.||.+.+.+++...
T Consensus 4 ~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 799999999999886 789999999999999999999998887642 125689999999999999999999999888
Q ss_pred CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
++.+..++|+......... +..+++|+|+||+.+.+.+.......+.++++||+||||+
T Consensus 80 ~~~~~~~~g~~~~~~~~~~---------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~ 138 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQH---------------------IIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHN 138 (555)
T ss_dssp TCCEEEECTTTGGGSCHHH---------------------HHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGG
T ss_pred CcEEEEEcCCCcchhhHHH---------------------HhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccc
Confidence 8999999998864433221 2234699999999999988775433688899999999999
Q ss_pred hhHHHH-hhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchh-----
Q 011605 209 LLREAY-QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK----- 282 (481)
Q Consensus 209 l~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~----- 282 (481)
+...+. ...+......... ....+..+.+++|||+......
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~lSAT~~~~~~~~~~~~ 185 (555)
T 3tbk_A 139 TSKNHPYNQIMFRYLDHKLG---------------------------------ESRDPLPQVVGLTASVGVGDAKTAEEA 185 (555)
T ss_dssp CSTTCHHHHHHHHHHHHHTS---------------------------------SCCSCCCEEEEEESCCCCTTCCSHHHH
T ss_pred cCCcchHHHHHHHHHHhhhc---------------------------------cccCCCCeEEEEecCcccCccccHHHH
Confidence 876532 2212122111100 0011345799999999543100
Q ss_pred ---h---hc------------------ccccCCceeecCCcc-cc-----------------------------------
Q 011605 283 ---L---AQ------------------LDLHHPLFLTTGETR-YK----------------------------------- 302 (481)
Q Consensus 283 ---~---~~------------------~~~~~~~~~~~~~~~-~~----------------------------------- 302 (481)
. .. .+...+......... ..
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 265 (555)
T 3tbk_A 186 MQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNRE 265 (555)
T ss_dssp HHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCC
T ss_pred HHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 0 00 000000000000000 00
Q ss_pred Ccc-----ccc------------------------------------------------------cc-------------
Q 011605 303 LPE-----RLE------------------------------------------------------SY------------- 310 (481)
Q Consensus 303 ~~~-----~~~------------------------------------------------------~~------------- 310 (481)
... ... .+
T Consensus 266 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (555)
T 3tbk_A 266 FGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETE 345 (555)
T ss_dssp SSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HH
T ss_pred ccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHH
Confidence 000 000 00
Q ss_pred ------------------ccccCCCchHHHHHHHHHh----cCCCeEEEEecchhhHHHHHHHHhhccc---------cc
Q 011605 311 ------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE---------LR 359 (481)
Q Consensus 311 ------------------~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~---------~~ 359 (481)
........|...+.+++.. ...+++||||+++..++.+++.|...+. .+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g 425 (555)
T 3tbk_A 346 RELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTG 425 (555)
T ss_dssp HHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC
T ss_pred HHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEe
Confidence 0000124455566666644 3568999999999999999999987541 12
Q ss_pred eeEEEcccccChHHHHHHHHHHhc-CCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEE
Q 011605 360 IKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (481)
Q Consensus 360 ~~~~~~~~~~~~~~r~~~~~~f~~-g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 438 (481)
.....+||+|+..+|.++++.|++ |+.+|||||+++++|+|+|++++||+|++|+|+..|+||+|| ||. +.|.++++
T Consensus 426 ~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l 503 (555)
T 3tbk_A 426 RGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLL 503 (555)
T ss_dssp --------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEE
T ss_pred cCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEE
Confidence 344556779999999999999999 999999999999999999999999999999999999999999 898 78999999
Q ss_pred eecchHHHHH
Q 011605 439 LHKDEVKRFK 448 (481)
Q Consensus 439 ~~~~~~~~~~ 448 (481)
+.+.+.+...
T Consensus 504 ~~~~~~~~~~ 513 (555)
T 3tbk_A 504 TSSADVIEKE 513 (555)
T ss_dssp ESCHHHHHHH
T ss_pred EcCCCHHHHH
Confidence 9988765443
No 26
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.2e-39 Score=321.51 Aligned_cols=324 Identities=24% Similarity=0.284 Sum_probs=236.5
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (481)
.|+++|.+++..++. + ++++.+|||+|||+++++++...+.. .+.++||++|+++|+.||.+++.+++...+
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHH---SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 799999999999876 4 99999999999999999988877662 345899999999999999999999974334
Q ss_pred ceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHh
Q 011605 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 130 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l 209 (481)
..+..+.|+......... ..+++|+|+||+.+...+... ...+.++++||+||||++
T Consensus 81 ~~v~~~~g~~~~~~~~~~----------------------~~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~~ 137 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSKA----------------------WARAKVIVATPQTIENDLLAG-RISLEDVSLIVFDEAHRA 137 (494)
T ss_dssp GGEEEECSCSCHHHHHHH----------------------HHHCSEEEECHHHHHHHHHTT-SCCTTSCSEEEEETGGGC
T ss_pred hheEEeeCCcchhhhhhh----------------------ccCCCEEEecHHHHHHHHhcC-CcchhhceEEEEECCccc
Confidence 588888888765543221 124599999999999987753 356788999999999998
Q ss_pred hHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhc---c
Q 011605 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ---L 286 (481)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~---~ 286 (481)
.+......+...+.... +..+.+++|||+......... .
T Consensus 138 ~~~~~~~~~~~~~~~~~--------------------------------------~~~~~l~lTaTp~~~~~~~~~l~~~ 179 (494)
T 1wp9_A 138 VGNYAYVFIAREYKRQA--------------------------------------KNPLVIGLTASPGSTPEKIMEVINN 179 (494)
T ss_dssp STTCHHHHHHHHHHHHC--------------------------------------SSCCEEEEESCSCSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhcC--------------------------------------CCCeEEEEecCCCCCcHHHHHHHHh
Confidence 64422222222222111 233689999999744222111 0
Q ss_pred cccCCceeecCCc----c-----------ccCcccc--------------------------------------------
Q 011605 287 DLHHPLFLTTGET----R-----------YKLPERL-------------------------------------------- 307 (481)
Q Consensus 287 ~~~~~~~~~~~~~----~-----------~~~~~~~-------------------------------------------- 307 (481)
............. . ...+...
T Consensus 180 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (494)
T 1wp9_A 180 LGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIIN 259 (494)
T ss_dssp TTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHH
T ss_pred cChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHH
Confidence 0000000000000 0 0000000
Q ss_pred --------------------------------------ccc-----------------------------------cccc
Q 011605 308 --------------------------------------ESY-----------------------------------KLIC 314 (481)
Q Consensus 308 --------------------------------------~~~-----------------------------------~~~~ 314 (481)
..+ ....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (494)
T 1wp9_A 260 EEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIG 339 (494)
T ss_dssp HHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred HHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcC
Confidence 000 0001
Q ss_pred CCCchHHHHHHHHHh----cCCCeEEEEecchhhHHHHHHHHhhccccceeEEEccc--------ccChHHHHHHHHHHh
Q 011605 315 ESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG--------LQRQSVRSKTLKAFR 382 (481)
Q Consensus 315 ~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~--------~~~~~~r~~~~~~f~ 382 (481)
....|...+.+++.. ..++++||||+++..++.+++.|...+ ..+..+|| +++..+|.++++.|+
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~ 416 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG---IKAKRFVGQASKENDRGLSQREQKLILDEFA 416 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT---CCEEEECCSSCC-------CCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcC---CCcEEEeccccccccccCCHHHHHHHHHHHh
Confidence 344566667777766 468899999999999999999999876 78999999 999999999999999
Q ss_pred cCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHH
Q 011605 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446 (481)
Q Consensus 383 ~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 446 (481)
+|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|+ |.++.++.+++.+.
T Consensus 417 ~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 417 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp HTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred cCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 9999999999999999999999999999999999999999999999998 99999999876543
No 27
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3e-40 Score=365.42 Aligned_cols=380 Identities=18% Similarity=0.228 Sum_probs=265.8
Q ss_pred CCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc-------cCCccE
Q 011605 32 LPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------VRCLRA 104 (481)
Q Consensus 32 ~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~-------~~~~~~ 104 (481)
+..||+....++. ||.+++++|.++++.++. .++|++++||||+|||+++.++++..+.... ..+.++
T Consensus 63 i~~Lp~~~~~~f~--g~~~ln~iQs~~~~~al~---~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~ 137 (1724)
T 4f92_B 63 VEKLPKYAQAGFE--GFKTLNRIQSKLYRAALE---TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKI 137 (1724)
T ss_dssp TTTSCGGGSTTCT--TCSBCCHHHHHTHHHHHT---CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEE
T ss_pred hHhcCHHHHHhcC--CCCCCCHHHHHHHHHHHc---CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEE
Confidence 3346655554443 799999999999999886 4789999999999999999999999987632 245689
Q ss_pred EEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHH
Q 011605 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184 (481)
Q Consensus 105 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~ 184 (481)
||++|+++|+.|..+.+.+.+...|+.+..++|+...... ...+++|+||||+++.
T Consensus 138 lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~------------------------~~~~~~IlVtTpEkld 193 (1724)
T 4f92_B 138 IYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE------------------------EISATQIIVCTPEKWD 193 (1724)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT------------------------TGGGCSEEEECHHHHH
T ss_pred EEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc------------------------ccCCCCEEEECHHHHH
Confidence 9999999999999999999888889999999998764321 1135699999999987
Q ss_pred HHHhcCCC-cccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCC
Q 011605 185 DHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263 (481)
Q Consensus 185 ~~l~~~~~-~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (481)
.++.+... ..++.+++|||||+|.+.+ ..+..++.++.++...... .
T Consensus 194 ~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~-------------------------------~ 241 (1724)
T 4f92_B 194 IITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEM-------------------------------T 241 (1724)
T ss_dssp HHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHH-------------------------------H
T ss_pred HHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHh-------------------------------C
Confidence 76655432 2478899999999996644 5777777777654321000 0
Q ss_pred CcceeeeeeceeeccCch--hhhcccccCC-ceeecCCccccCcccccccccccCCCc---hHH----HHHHHHHh-cCC
Q 011605 264 YPRLVKMVLSATLTQDPN--KLAQLDLHHP-LFLTTGETRYKLPERLESYKLICESKL---KPL----YLVALLQS-LGE 332 (481)
Q Consensus 264 ~~~~~~v~~sat~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~~----~l~~~l~~-~~~ 332 (481)
.+.+++|++|||+++... .|+....... ..+..... |...+.......... +.. .+...+.. ..+
T Consensus 242 ~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~R----PvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 317 (1724)
T 4f92_B 242 QEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFR----PVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGK 317 (1724)
T ss_dssp TCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGC----SSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCc----cCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcC
Confidence 035589999999864322 2221110000 11111111 111111111111111 111 12222222 246
Q ss_pred CeEEEEecchhhHHHHHHHHhhccc----------------------------------cceeEEEcccccChHHHHHHH
Q 011605 333 EKCIVFTSSVESTHRLCTLLNHFGE----------------------------------LRIKIKEYSGLQRQSVRSKTL 378 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~----------------------------------~~~~~~~~~~~~~~~~r~~~~ 378 (481)
+++||||++++.|+.+++.|.+... ...+++++||+|+..+|..+.
T Consensus 318 ~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE 397 (1724)
T 4f92_B 318 NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVE 397 (1724)
T ss_dssp CCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHH
Confidence 7899999999999999988864200 123688999999999999999
Q ss_pred HHHhcCCceEEEEccccccCCCCCCCcEEEE----cC------CCCChhHHHHHhhhcccCCCC--ccEEEEeecchHHH
Q 011605 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YD------KPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKR 446 (481)
Q Consensus 379 ~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~----~~------~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~ 446 (481)
+.|++|.++|||||++++.|||+|..++||. |+ .+.+..+|.||+|||||.|.+ |.+++++...+...
T Consensus 398 ~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~ 477 (1724)
T 4f92_B 398 DLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQY 477 (1724)
T ss_dssp HHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCH
T ss_pred HHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHH
Confidence 9999999999999999999999999888875 33 245799999999999998865 99999999988887
Q ss_pred HHHHHHHhcCCCCCCCCCCchhhhhhhccccCC
Q 011605 447 FKKLLQKADNDSCPIHSIPSSLIESLRPVYKSG 479 (481)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (481)
+..++..-... ...+...+.++|+.+.-.|
T Consensus 478 ~~~ll~~~~pi---eS~l~~~l~d~L~aeI~~g 507 (1724)
T 4f92_B 478 YLSLLNQQLPI---ESQMVSKLPDMLNAEIVLG 507 (1724)
T ss_dssp HHHHTTTCSCC---CCCTTTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcc---hhhccccHHHHHHHHHHHh
Confidence 77765543221 1334455666666654433
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-39 Score=343.26 Aligned_cols=341 Identities=18% Similarity=0.187 Sum_probs=203.1
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc-cCCccEEEEcccHHHHHHHHHHHHH
Q 011605 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 45 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
.+|+..|+++|.++++.++. ++++++++|||+|||++++++++..+.... ..+.++||++|+++|+.||.+.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 46789999999999999876 789999999999999999999998887642 1256899999999999999999999
Q ss_pred hccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEE
Q 011605 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 124 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVv 203 (481)
++...++.+..++|+........ .+..+++|+|+||+.+.+.+.......+.++++|||
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVE---------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHH---------------------HHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred hcccCCceEEEEeCCcchhhhHH---------------------HhhCCCCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 99888999999999885443322 223467999999999999887644336888999999
Q ss_pred echhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCc---
Q 011605 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP--- 280 (481)
Q Consensus 204 DE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~--- 280 (481)
||||++..... +..+......... ....+..+++++|||+....
T Consensus 378 DEaH~~~~~~~---~~~i~~~~~~~~~------------------------------~~~~~~~~~l~lSATp~~~~~~~ 424 (797)
T 4a2q_A 378 DECHNTTGNHP---YNVLMTRYLEQKF------------------------------NSASQLPQILGLTASVGVGNAKN 424 (797)
T ss_dssp TTGGGCSTTSH---HHHHHHHHHHHHH------------------------------TTCCCCCEEEEEESCCCCTTCCS
T ss_pred ECccccCCCcc---HHHHHHHHHHHhh------------------------------ccCCCCCeEEEEcCCcccccccc
Confidence 99999876432 2222211111000 00113457899999995321
Q ss_pred -----hh---hh------------------cccccCCceeecCCcc-cc-----------------------------C-
Q 011605 281 -----NK---LA------------------QLDLHHPLFLTTGETR-YK-----------------------------L- 303 (481)
Q Consensus 281 -----~~---~~------------------~~~~~~~~~~~~~~~~-~~-----------------------------~- 303 (481)
.. +. ..+...+......... .. .
T Consensus 425 ~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~ 504 (797)
T 4a2q_A 425 IEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNS 504 (797)
T ss_dssp HHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhc
Confidence 00 00 0000111000000000 00 0
Q ss_pred -----cc----cccc-----------------------------------------------------------------
Q 011605 304 -----PE----RLES----------------------------------------------------------------- 309 (481)
Q Consensus 304 -----~~----~~~~----------------------------------------------------------------- 309 (481)
.. ....
T Consensus 505 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 584 (797)
T 4a2q_A 505 KKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYT 584 (797)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCcc
Confidence 00 0000
Q ss_pred --------------------cccccCCCchHHHHHHHHHh----cCCCeEEEEecchhhHHHHHHHHhhccc--------
Q 011605 310 --------------------YKLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE-------- 357 (481)
Q Consensus 310 --------------------~~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~-------- 357 (481)
.........|...+..++.. ..++++||||+++..++.+++.|++.+.
T Consensus 585 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~ 664 (797)
T 4a2q_A 585 ELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGV 664 (797)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceE
Confidence 00000124455566666654 4568999999999999999999987421
Q ss_pred -cceeEEEcccccChHHHHHHHHHHhc-CCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccE
Q 011605 358 -LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435 (481)
Q Consensus 358 -~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~ 435 (481)
.+.+...+||+|+..+|..+++.|++ |+.+|||||+++++|+|+|++++||+|++|+|+..|+||+|| ||. +.|.|
T Consensus 665 l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~ 742 (797)
T 4a2q_A 665 LMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKC 742 (797)
T ss_dssp C----------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCE
T ss_pred EEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceE
Confidence 12455667899999999999999999 999999999999999999999999999999999999999999 998 78999
Q ss_pred EEEeecchHH
Q 011605 436 FTLLHKDEVK 445 (481)
Q Consensus 436 ~~~~~~~~~~ 445 (481)
++++...+.+
T Consensus 743 i~l~~~~~~e 752 (797)
T 4a2q_A 743 ILVTSKTEVV 752 (797)
T ss_dssp EEEECCHHHH
T ss_pred EEEEeCCcHH
Confidence 9999887653
No 29
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.9e-39 Score=356.53 Aligned_cols=358 Identities=18% Similarity=0.175 Sum_probs=257.5
Q ss_pred CCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
.|++...+.+...+|..++|+|.++++.+++ .+.|++++||||+|||+++.++++..+... ++.+++|++|+++|
T Consensus 910 ~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~---~~~nvlv~APTGSGKTliaelail~~l~~~--~~~kavyi~P~raL 984 (1724)
T 4f92_B 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYN---SDDNVFVGAPTGSGKTICAEFAILRMLLQS--SEGRCVYITPMEAL 984 (1724)
T ss_dssp GSCCHHHHTTTTTTCSBCCHHHHHHHHHHHS---CCSCEEEECCTTSCCHHHHHHHHHHHHHHC--TTCCEEEECSCHHH
T ss_pred cccCHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCCcEEEEeCCCCCchHHHHHHHHHHHHhC--CCCEEEEEcChHHH
Confidence 4666667777777899999999999999886 467899999999999999999999988874 34589999999999
Q ss_pred HHHHHHHHHH-hccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCC
Q 011605 114 ALQVKDVFAA-IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (481)
Q Consensus 114 ~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~ 192 (481)
+.|.++++.+ +....|++++.++|+....... ..+++|+|+||+++..++.++..
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~------------------------~~~~~IiV~TPEkld~llr~~~~ 1040 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL------------------------LGKGNIIISTPEKWDILSRRWKQ 1040 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH------------------------HHHCSEEEECHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcchhh------------------------cCCCCEEEECHHHHHHHHhCccc
Confidence 9999999876 4556789999999987543331 12459999999999887766543
Q ss_pred c-ccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeee
Q 011605 193 F-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (481)
Q Consensus 193 ~-~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (481)
. .++++++||+||+|.+.+ ..+..++.++.++...... ..+.+++++
T Consensus 1041 ~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~-------------------------------~~~~~riI~ 1088 (1724)
T 4f92_B 1041 RKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQ-------------------------------IERPIRIVA 1088 (1724)
T ss_dssp CHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHT-------------------------------TSSCCEEEE
T ss_pred ccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhh-------------------------------cCCCceEEE
Confidence 2 478899999999997765 4677777777665432110 013568999
Q ss_pred eceeeccCchhhhcccccCCc--eeecCCccccCcccccccccccCC---CchHHHHHHHH-HhcCCCeEEEEecchhhH
Q 011605 272 LSATLTQDPNKLAQLDLHHPL--FLTTGETRYKLPERLESYKLICES---KLKPLYLVALL-QSLGEEKCIVFTSSVEST 345 (481)
Q Consensus 272 ~sat~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~k~~~l~~~l-~~~~~~~~lVf~~s~~~~ 345 (481)
+|||+.+......+....... .+........+...+..+...... ......+...+ ....++++||||++++.|
T Consensus 1089 lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~ 1168 (1724)
T 4f92_B 1089 LSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQT 1168 (1724)
T ss_dssp EESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHH
T ss_pred EeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHH
Confidence 999997543332222222221 222221111111111111000000 00111222233 334677999999999999
Q ss_pred HHHHHHHhhcc-------------------------------ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc
Q 011605 346 HRLCTLLNHFG-------------------------------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (481)
Q Consensus 346 ~~l~~~L~~~~-------------------------------~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~ 394 (481)
+.++..|.... ....+++++|++++..+|..+++.|++|.++|||||++
T Consensus 1169 ~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~t 1248 (1724)
T 4f92_B 1169 RLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRS 1248 (1724)
T ss_dssp HHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGG
T ss_pred HHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChH
Confidence 99987764310 01246899999999999999999999999999999999
Q ss_pred cccCCCCCCCcEEEEc----------CCCCChhHHHHHhhhcccCCCC--ccEEEEeecchHHHHHHHHH
Q 011605 395 MTRGMDVEGVNNVVNY----------DKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLLQ 452 (481)
Q Consensus 395 l~~Gvdl~~~~~Vi~~----------~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~ 452 (481)
++.|+|+|...+||.. ..+.+..+|.||+|||||.|.+ |.|++++...+...+++++.
T Consensus 1249 lA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~ 1318 (1724)
T 4f92_B 1249 LCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLY 1318 (1724)
T ss_dssp GSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTT
T ss_pred HHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhC
Confidence 9999999988877732 2346789999999999999975 99999999888877777653
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-39 Score=339.37 Aligned_cols=328 Identities=19% Similarity=0.195 Sum_probs=242.5
Q ss_pred HHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHH
Q 011605 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 44 ~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
..++| .|+++|.+++..+.. ++++++++|||+|||+++.++++..+.. +.+++|++|+++|+.|+++.+.+
T Consensus 81 ~~~~f-~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~~----g~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 81 RTYPF-TLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp CCCSS-CCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHHT----TCEEEEEESSHHHHHHHHHHHHH
T ss_pred HhCCC-CCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhcc----CCeEEEECChHHHHHHHHHHHHH
Confidence 45678 599999999999875 8899999999999999998888877644 35899999999999999999998
Q ss_pred hccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEE
Q 011605 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 124 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVv 203 (481)
++. .++.++|+.... .+++|+|+||+.+.+.+... ...+.++++|||
T Consensus 152 ~~~----~vglltGd~~~~----------------------------~~~~IvV~Tpe~L~~~L~~~-~~~l~~l~lVVi 198 (1010)
T 2xgj_A 152 EFG----DVGLMTGDITIN----------------------------PDAGCLVMTTEILRSMLYRG-SEVMREVAWVIF 198 (1010)
T ss_dssp HHS----CEEEECSSCEEC----------------------------TTCSEEEEEHHHHHHHHHHT-CTTGGGEEEEEE
T ss_pred HhC----CEEEEeCCCccC----------------------------CCCCEEEEcHHHHHHHHHcC-cchhhcCCEEEE
Confidence 864 677788876532 24589999999999887763 356788999999
Q ss_pred echhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCch--
Q 011605 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN-- 281 (481)
Q Consensus 204 DE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~-- 281 (481)
||+|.+.+..++..++.++..+. +..+++++|||+++...
T Consensus 199 DEaH~l~d~~rg~~~e~il~~l~--------------------------------------~~~~il~LSATi~n~~e~a 240 (1010)
T 2xgj_A 199 DEVHYMRDKERGVVWEETIILLP--------------------------------------DKVRYVFLSATIPNAMEFA 240 (1010)
T ss_dssp ETGGGGGCTTTHHHHHHHHHHSC--------------------------------------TTCEEEEEECCCTTHHHHH
T ss_pred echhhhcccchhHHHHHHHHhcC--------------------------------------CCCeEEEEcCCCCCHHHHH
Confidence 99999988777777777766553 24488999999875432
Q ss_pred hhhcccccCCceeecC-CccccCcccc-----ccc-c------------------cccC-------------------C-
Q 011605 282 KLAQLDLHHPLFLTTG-ETRYKLPERL-----ESY-K------------------LICE-------------------S- 316 (481)
Q Consensus 282 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~-~------------------~~~~-------------------~- 316 (481)
.+.......+..+... .....+...+ ... . .... .
T Consensus 241 ~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~ 320 (1010)
T 2xgj_A 241 EWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKG 320 (1010)
T ss_dssp HHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----------------------
T ss_pred HHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccccccccccccccc
Confidence 2222111222111111 0000000000 000 0 0000 0
Q ss_pred -------CchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhcccc-------------------------------
Q 011605 317 -------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL------------------------------- 358 (481)
Q Consensus 317 -------~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~------------------------------- 358 (481)
......+...+......++||||+++..|+.+++.|...+..
T Consensus 321 ~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~ 400 (1010)
T 2xgj_A 321 GSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKH 400 (1010)
T ss_dssp --------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHH
T ss_pred ccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHH
Confidence 122333444455555679999999999999999998763210
Q ss_pred -----ceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEE----cCC----CCChhHHHHHhhh
Q 011605 359 -----RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YDK----PAYIKTYIHRAGR 425 (481)
Q Consensus 359 -----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~----~~~----~~s~~~~~Q~~GR 425 (481)
..++..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+ |+. |.++.+|.||+||
T Consensus 401 l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GR 480 (1010)
T 2xgj_A 401 ILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGR 480 (1010)
T ss_dssp HHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTT
T ss_pred HHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhh
Confidence 124889999999999999999999999999999999999999999999999 888 8899999999999
Q ss_pred cccCCCC--ccEEEEeecc-hHHHHHHHH
Q 011605 426 TARAGQL--GRCFTLLHKD-EVKRFKKLL 451 (481)
Q Consensus 426 ~~R~~~~--g~~~~~~~~~-~~~~~~~~~ 451 (481)
+||.|++ |.|++++... +...+.+++
T Consensus 481 AGR~G~d~~G~vi~l~~~~~e~~~~~~l~ 509 (1010)
T 2xgj_A 481 AGRRGLDDRGIVIMMIDEKMEPQVAKGMV 509 (1010)
T ss_dssp BCCTTTCSSEEEEEEECSCCCHHHHHHHH
T ss_pred cccCCCCCceEEEEEECCCCCHHHHHHHH
Confidence 9999975 9999999866 444555553
No 31
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.3e-39 Score=330.24 Aligned_cols=328 Identities=17% Similarity=0.212 Sum_probs=235.4
Q ss_pred CHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHH
Q 011605 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 36 ~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~--~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (481)
.+.+.+.++.++| .|+++|.++++.++..+..+ .+++++++||+|||++++++++..+..+ .+++|++||++|
T Consensus 355 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g----~qvlvlaPtr~L 429 (780)
T 1gm5_A 355 GKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG----FQTAFMVPTSIL 429 (780)
T ss_dssp THHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT----SCEEEECSCHHH
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC----CeEEEEeCcHHH
Confidence 3566677788999 99999999999988643323 4899999999999999999999887654 489999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcC-CCcEEEeCchHHHHHHhcCCC
Q 011605 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRG 192 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~T~~~l~~~l~~~~~ 192 (481)
+.|+++.+.+++...++++..++|+.........+ ..+.. .++|+|+||+.+.+ .
T Consensus 430 a~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~------------------~~l~~g~~~IvVgT~~ll~~------~ 485 (780)
T 1gm5_A 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIK------------------SGLRNGQIDVVIGTHALIQE------D 485 (780)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHH------------------HHHHSSCCCEEEECTTHHHH------C
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHH------------------HHHhcCCCCEEEECHHHHhh------h
Confidence 99999999999988899999999998765543222 22333 48999999987744 2
Q ss_pred cccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeee
Q 011605 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (481)
Q Consensus 193 ~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 272 (481)
..+.++++||+||+|++..... ..+. . .....+++++
T Consensus 486 ~~~~~l~lVVIDEaHr~g~~qr--------~~l~----------------------------------~-~~~~~~vL~m 522 (780)
T 1gm5_A 486 VHFKNLGLVIIDEQHRFGVKQR--------EALM----------------------------------N-KGKMVDTLVM 522 (780)
T ss_dssp CCCSCCCEEEEESCCCC-------------CCCC----------------------------------S-SSSCCCEEEE
T ss_pred hhccCCceEEecccchhhHHHH--------HHHH----------------------------------H-hCCCCCEEEE
Confidence 4578899999999998521110 0000 0 0024578999
Q ss_pred ceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHh-c-CCCeEEEEecchh-------
Q 011605 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS-L-GEEKCIVFTSSVE------- 343 (481)
Q Consensus 273 sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~-~~~~~lVf~~s~~------- 343 (481)
|||+.............+...+..... .............+...+...+.. . .+++++|||+.+.
T Consensus 523 SATp~p~tl~~~~~g~~~~s~i~~~p~------~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~ 596 (780)
T 1gm5_A 523 SATPIPRSMALAFYGDLDVTVIDEMPP------GRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNV 596 (780)
T ss_dssp ESSCCCHHHHHHHTCCSSCEEECCCCS------SCCCCEECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------
T ss_pred eCCCCHHHHHHHHhCCcceeeeeccCC------CCcceEEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhH
Confidence 999865433322211111111111000 000111111122233334444433 2 4678999999764
Q ss_pred -hHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCC-ChhHHHH
Q 011605 344 -STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIH 421 (481)
Q Consensus 344 -~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~-s~~~~~Q 421 (481)
.++.+++.|++..-.+..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++++. +...+.|
T Consensus 597 ~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Q 676 (780)
T 1gm5_A 597 KSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQ 676 (780)
T ss_dssp CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHH
Confidence 46777777776111236789999999999999999999999999999999999999999999999999986 6889999
Q ss_pred HhhhcccCCCCccEEEEeec
Q 011605 422 RAGRTARAGQLGRCFTLLHK 441 (481)
Q Consensus 422 ~~GR~~R~~~~g~~~~~~~~ 441 (481)
++||+||.|+.|.|++++.+
T Consensus 677 r~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 677 LRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp HHHTSCCSSTTCEEECCCCS
T ss_pred HhcccCcCCCCCEEEEEECC
Confidence 99999999999999999874
No 32
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.3e-39 Score=345.06 Aligned_cols=338 Identities=20% Similarity=0.301 Sum_probs=248.4
Q ss_pred HHHH-HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHH
Q 011605 41 VALQ-NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (481)
Q Consensus 41 ~~~~-~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~ 119 (481)
+.+. .+||. | ++|.++++.++. ++++++.+|||+|||+ +.++++..+.. .++++||++||++|+.|+.+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl-~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILR----KESFAATAPTGVGKTS-FGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHT----TCCEECCCCBTSCSHH-HHHHHHHHHHT---TSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHh----CCCEEEEcCCCCCHHH-HHHHHHHHHhh---cCCeEEEEeccHHHHHHHHH
Confidence 3344 48998 9 999999999886 8999999999999998 77777766554 35689999999999999999
Q ss_pred HHHHhccccCc----eEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCccc
Q 011605 120 VFAAIAPAVGL----SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195 (481)
Q Consensus 120 ~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~ 195 (481)
.+++++...++ .+..++|+.+........ ..+.. ++|+|+||+.|.+.+.. +
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~------------------~~l~~-~~IlV~TP~~L~~~l~~-----L 173 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFM------------------QNLRN-FKIVITTTQFLSKHYRE-----L 173 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHH------------------HSGGG-CSEEEEEHHHHHHCSTT-----S
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHH------------------hhccC-CCEEEEcHHHHHHHHHH-----h
Confidence 99999988788 899999998766542221 22334 79999999999987765 6
Q ss_pred CCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeecee
Q 011605 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (481)
Q Consensus 196 ~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat 275 (481)
++++++|+||||++++ ++..+..++..+........ .......+.+++|||
T Consensus 174 ~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~---------------------------~~~~~~~q~~l~SAT 224 (1054)
T 1gku_B 174 GHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKT---------------------------KSWVGEARGCLMVST 224 (1054)
T ss_dssp CCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTT---------------------------TEEEECCSSEEEECC
T ss_pred ccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhh---------------------------hhcccCCceEEEEec
Confidence 6899999999999887 56667777665532110000 000134478899999
Q ss_pred eccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhc
Q 011605 276 LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355 (481)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~ 355 (481)
.+.. .......+..+..+......... ..+..... ...+...+..++... ++++||||++...++.+++.|+..
T Consensus 225 ~t~~-~~~~~~~~~~~~~i~v~~~~~~~-~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~ 298 (1054)
T 1gku_B 225 ATAK-KGKKAELFRQLLNFDIGSSRITV-RNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK 298 (1054)
T ss_dssp CCSC-CCTTHHHHHHHHCCCCSCCEECC-CCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS
T ss_pred CCCc-hhHHHHHhhcceEEEccCcccCc-CCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc
Confidence 8876 43333333322222222111111 11111111 244555566666655 578999999999999999999864
Q ss_pred cccceeEEEcccccChHHHHHHHHHHhcCCceEEEE----ccccccCCCCCCC-cEEEEcCCC-----------------
Q 011605 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEGV-NNVVNYDKP----------------- 413 (481)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~----t~~l~~Gvdl~~~-~~Vi~~~~~----------------- 413 (481)
+.+..+||++. .+++.|++|+.+|||| |+++++|+|+|++ ++||+++.|
T Consensus 299 ----~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~ 369 (1054)
T 1gku_B 299 ----FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMV 369 (1054)
T ss_dssp ----SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHH
T ss_pred ----cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHH
Confidence 67899999983 7788999999999999 8999999999995 999999999
Q ss_pred ------------------------------------------------------CChhHHHHHhhhcccCCCCc--cEEE
Q 011605 414 ------------------------------------------------------AYIKTYIHRAGRTARAGQLG--RCFT 437 (481)
Q Consensus 414 ------------------------------------------------------~s~~~~~Q~~GR~~R~~~~g--~~~~ 437 (481)
.+..+|+||+||+||.|..| .+++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~ 449 (1054)
T 1gku_B 370 KLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGAS 449 (1054)
T ss_dssp HHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEE
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEE
Confidence 68999999999999987775 5888
Q ss_pred EeecchHHHHHHHHHHhcC
Q 011605 438 LLHKDEVKRFKKLLQKADN 456 (481)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~ 456 (481)
++...+...+..+.+.+..
T Consensus 450 ~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 450 FLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEECSCHHHHHHHHHHHHT
T ss_pred EEEecCHHHHHHHHHHHhh
Confidence 8888888888888888775
No 33
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3.5e-38 Score=337.72 Aligned_cols=336 Identities=18% Similarity=0.265 Sum_probs=241.4
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 45 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.+|| .|+++|.++++.++. ++++++++|||+|||++++.+++..+. .+.++||++||++|+.|+.+.++++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHHHHHHHHHHHh
Confidence 3788 799999999999886 889999999999999988887776652 3458999999999999999999997
Q ss_pred ccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcC-CCcEEEeCchHHHHHHhcCCCcccCCccEEEE
Q 011605 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 125 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVv 203 (481)
+ ..++++..++|+.+....... +..+.. .++|+|+||+.+.+++.. +.++++++||+
T Consensus 145 ~-~~~i~v~~l~Gg~~~~er~~~------------------~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lVi 202 (1104)
T 4ddu_A 145 A-DEKVKIFGFYSSMKKEEKEKF------------------EKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFV 202 (1104)
T ss_dssp S-CTTSCEEEECTTCCTTHHHHH------------------HHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEE
T ss_pred h-CCCCeEEEEeCCCCHHHHHHH------------------HHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEE
Confidence 7 568899999999876333221 122333 489999999999888764 55778999999
Q ss_pred echhHhhH-----------HHHhhh-HHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeee
Q 011605 204 DETDRLLR-----------EAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (481)
Q Consensus 204 DE~H~l~~-----------~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (481)
||||++.. .+|... +..++..+... ............++++
T Consensus 203 DEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~---------------------------~~~~~~~~~~~~q~ll 255 (1104)
T 4ddu_A 203 DDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQG---------------------------KIYERPKNLKPGILVV 255 (1104)
T ss_dssp SCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHT---------------------------SCCCCCSSCCCCEEEE
T ss_pred eCCCccccccccchhhhHhcCCCHHHHHHHHHhcccc---------------------------hhhhhhccCCCceEEE
Confidence 99997654 333334 55555544310 0000000013458999
Q ss_pred eceee-ccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHH
Q 011605 272 LSATL-TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350 (481)
Q Consensus 272 ~sat~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~ 350 (481)
+|||+ +........... ..+....... ....+....... .+...+..++... ++++||||+++..++.+++
T Consensus 256 ~SAT~~p~~~~~~~~~~~---l~i~v~~~~~-~~~~i~~~~~~~---~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~ 327 (1104)
T 4ddu_A 256 SSATAKPRGIRPLLFRDL---LNFTVGRLVS-VARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEEEGKELYE 327 (1104)
T ss_dssp ECBSSCCCSSTTHHHHHH---TCCCCCBCCC-CCCCEEEEEESC---CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHHH
T ss_pred EcCCCCcHHHHHHHhhcc---eeEEeccCCC-CcCCceeEEEec---CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHHH
Confidence 99994 433332111111 1111111111 111222222222 4666677777764 5899999999999999999
Q ss_pred HHhhccccceeEE-EcccccChHHHHHHHHHHhcCCceEEEE----ccccccCCCCCC-CcEEEEcCCCC----------
Q 011605 351 LLNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKPA---------- 414 (481)
Q Consensus 351 ~L~~~~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~iLv~----t~~l~~Gvdl~~-~~~Vi~~~~~~---------- 414 (481)
.|...+ ..+. .+||. |.+ ++.|++|+.+|||| |+++++|+|+|+ +++||+++.|.
T Consensus 328 ~L~~~g---~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~ 398 (1104)
T 4ddu_A 328 YLKRFK---FNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKA 398 (1104)
T ss_dssp HHHHTT---CCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSC
T ss_pred HHHhCC---CCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccC
Confidence 999876 7887 88882 555 99999999999999 999999999999 99999999998
Q ss_pred --------------------------------------------------------------ChhHHHHHhhhcccCCCC
Q 011605 415 --------------------------------------------------------------YIKTYIHRAGRTARAGQL 432 (481)
Q Consensus 415 --------------------------------------------------------------s~~~~~Q~~GR~~R~~~~ 432 (481)
+...|+||+||+||.+..
T Consensus 399 ~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~g 478 (1104)
T 4ddu_A 399 PRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNG 478 (1104)
T ss_dssp CHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCC
Confidence 677899999999996643
Q ss_pred --ccEEEEeecchHHHHHHHHHHhc
Q 011605 433 --GRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 433 --g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
+.++.++..+|.+.+..+.+.+.
T Consensus 479 g~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 479 VLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp EECCEEEEEECCCHHHHHHHHHHHH
T ss_pred CcccceEEEEEecHHHHHHHHHHHh
Confidence 24455555567776766666664
No 34
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.4e-38 Score=338.62 Aligned_cols=340 Identities=19% Similarity=0.198 Sum_probs=201.8
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc-cCCccEEEEcccHHHHHHHHHHHHH
Q 011605 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 45 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
-.|+..|+++|.++++.++. ++++++.+|||+|||++++++++..+.... ..+.++||++|+++|+.||.+.+++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp -----CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 35678999999999999876 889999999999999999999887766532 1156899999999999999999999
Q ss_pred hccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEE
Q 011605 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 124 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVv 203 (481)
++...++.+..++|+......... +..+++|+|+||+++.+.+.......+.++++||+
T Consensus 319 ~~~~~~~~v~~~~G~~~~~~~~~~---------------------~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liVi 377 (936)
T 4a2w_A 319 HFERQGYSVQGISGENFSNVSVEK---------------------VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (936)
T ss_dssp HHHTTTCCEEEECCC-----CCHH---------------------HHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred HhcccCceEEEEECCcchhhHHHH---------------------hccCCCEEEecHHHHHHHHHcCccccccCCCEEEE
Confidence 988778999999998754332111 12346999999999999888644336888999999
Q ss_pred echhHhhHHHH-hhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCch-
Q 011605 204 DETDRLLREAY-QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN- 281 (481)
Q Consensus 204 DE~H~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~- 281 (481)
||||++...+. ...+..+....... ..+..+++++|||+.....
T Consensus 378 DEaH~~~~~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~l~LSATp~~~~~~ 423 (936)
T 4a2w_A 378 DECHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNAK 423 (936)
T ss_dssp ETGGGCSTTCHHHHHHHHHHHHHHTT----------------------------------CSCCCEEEEEESCCCCTTCC
T ss_pred ECccccCCCccHHHHHHHHHHHhhcc----------------------------------CCCcCeEEEecCCcccccch
Confidence 99999865432 11111221111000 0134478889999843210
Q ss_pred -------hh---h------------------cccccCCceeecCCcc-cc-----------------------------C
Q 011605 282 -------KL---A------------------QLDLHHPLFLTTGETR-YK-----------------------------L 303 (481)
Q Consensus 282 -------~~---~------------------~~~~~~~~~~~~~~~~-~~-----------------------------~ 303 (481)
.. . ..+...+......... .. .
T Consensus 424 ~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~ 503 (936)
T 4a2w_A 424 NIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQN 503 (936)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC---------
T ss_pred hHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 00 0 0000111100000000 00 0
Q ss_pred -----cc-----cc------------------------------------------------------ccc---------
Q 011605 304 -----PE-----RL------------------------------------------------------ESY--------- 310 (481)
Q Consensus 304 -----~~-----~~------------------------------------------------------~~~--------- 310 (481)
.. .. ..+
T Consensus 504 ~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~ 583 (936)
T 4a2w_A 504 SKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPY 583 (936)
T ss_dssp ---CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccC
Confidence 00 00 000
Q ss_pred ----------------------ccccCCCchHHHHHHHHHh----cCCCeEEEEecchhhHHHHHHHHhhccc-------
Q 011605 311 ----------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE------- 357 (481)
Q Consensus 311 ----------------------~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~------- 357 (481)
........|...+.+++.. ..++++||||+++..++.+++.|.+...
T Consensus 584 ~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~ 663 (936)
T 4a2w_A 584 TELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPG 663 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCE
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCcccccccee
Confidence 0000124466666667665 3568999999999999999999987511
Q ss_pred --cceeEEEcccccChHHHHHHHHHHhc-CCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCcc
Q 011605 358 --LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (481)
Q Consensus 358 --~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~ 434 (481)
.+.....+||+|+..+|.++++.|++ |+.+|||||+++++|+|+|++++||+|++|+|+..|+||+|| ||. +.|.
T Consensus 664 ~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~ 741 (936)
T 4a2w_A 664 VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSK 741 (936)
T ss_dssp EC----------------------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCC
T ss_pred EEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCE
Confidence 12445567899999999999999999 999999999999999999999999999999999999999999 998 7899
Q ss_pred EEEEeecchHH
Q 011605 435 CFTLLHKDEVK 445 (481)
Q Consensus 435 ~~~~~~~~~~~ 445 (481)
+++++...+.+
T Consensus 742 vi~Li~~~t~e 752 (936)
T 4a2w_A 742 CILVTSKTEVV 752 (936)
T ss_dssp EEEEESCHHHH
T ss_pred EEEEEeCCCHH
Confidence 99999887654
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.3e-37 Score=330.71 Aligned_cols=329 Identities=16% Similarity=0.152 Sum_probs=239.5
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 45 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.++| .|+++|.++++.++. ++++++.+|||+|||+++++++...+.. +.+++|++|+++|+.|+++.+.++
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~~----g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHRN----MTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHHT----TCEEEEEESCGGGHHHHHHHHHTT
T ss_pred hCCC-CCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4677 699999999999886 8899999999999999988887765443 348999999999999999999987
Q ss_pred ccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEe
Q 011605 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (481)
Q Consensus 125 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvD 204 (481)
+. ++.+..++|+.... ..++|+|+||+.|.+.+.... ..+.++++||||
T Consensus 106 ~~--~~~v~~l~G~~~~~----------------------------~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~lvViD 154 (997)
T 4a4z_A 106 FD--DVNIGLITGDVQIN----------------------------PDANCLIMTTEILRSMLYRGA-DLIRDVEFVIFD 154 (997)
T ss_dssp C----CCEEEECSSCEEC----------------------------TTSSEEEEEHHHHHHHHHHTC-SGGGGEEEEEEC
T ss_pred cC--CCeEEEEeCCCccC----------------------------CCCCEEEECHHHHHHHHHhCc-hhhcCCCEEEEE
Confidence 54 67888888876421 335999999999988886633 457889999999
Q ss_pred chhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchh--
Q 011605 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK-- 282 (481)
Q Consensus 205 E~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~-- 282 (481)
|+|++.+++++..++.++..+. +..+++++|||+++....
T Consensus 155 EaH~l~d~~~g~~~e~ii~~l~--------------------------------------~~v~iIlLSAT~~n~~ef~~ 196 (997)
T 4a4z_A 155 EVHYVNDQDRGVVWEEVIIMLP--------------------------------------QHVKFILLSATVPNTYEFAN 196 (997)
T ss_dssp CTTCCCTTCTTCCHHHHHHHSC--------------------------------------TTCEEEEEECCCTTHHHHHH
T ss_pred CcccccccchHHHHHHHHHhcc--------------------------------------cCCCEEEEcCCCCChHHHHH
Confidence 9999988888888877776653 245789999998643222
Q ss_pred hhcccccCCc-eeecCCccccCccc-------------------------------------------------------
Q 011605 283 LAQLDLHHPL-FLTTGETRYKLPER------------------------------------------------------- 306 (481)
Q Consensus 283 ~~~~~~~~~~-~~~~~~~~~~~~~~------------------------------------------------------- 306 (481)
+......... ++.......++...
T Consensus 197 ~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (997)
T 4a4z_A 197 WIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRG 276 (997)
T ss_dssp HHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------------
T ss_pred HHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccc
Confidence 1111110110 11000000000000
Q ss_pred ----------------------------------ccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHH
Q 011605 307 ----------------------------------LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (481)
Q Consensus 307 ----------------------------------~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (481)
...+........+...+...+......++||||++.+.|+.++..|
T Consensus 277 ~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L 356 (997)
T 4a4z_A 277 GSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWL 356 (997)
T ss_dssp ----------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHH
Confidence 0000111122334556777777777789999999999999999999
Q ss_pred hhcccc------------------------------------ceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccc
Q 011605 353 NHFGEL------------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (481)
Q Consensus 353 ~~~~~~------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~ 396 (481)
...+.. ..++..+||+|+..+|..+++.|++|..+|||||++++
T Consensus 357 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a 436 (997)
T 4a4z_A 357 EGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFA 436 (997)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhh
Confidence 764311 12578999999999999999999999999999999999
Q ss_pred cCCCCCCCcEEEEcCCCC---------ChhHHHHHhhhcccCCCC--ccEEEEee--cchHHHHHHHHH
Q 011605 397 RGMDVEGVNNVVNYDKPA---------YIKTYIHRAGRTARAGQL--GRCFTLLH--KDEVKRFKKLLQ 452 (481)
Q Consensus 397 ~Gvdl~~~~~Vi~~~~~~---------s~~~~~Q~~GR~~R~~~~--g~~~~~~~--~~~~~~~~~~~~ 452 (481)
+|+|+|+ ..||+.+.+. |+.+|.||+||+||.|.+ |.|++++. ..+...+++++.
T Consensus 437 ~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~ 504 (997)
T 4a4z_A 437 MGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTM 504 (997)
T ss_dssp HSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHH
T ss_pred CCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhc
Confidence 9999999 6666666555 899999999999999854 77777773 334555555543
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=5.1e-37 Score=330.86 Aligned_cols=329 Identities=17% Similarity=0.183 Sum_probs=241.2
Q ss_pred CCHHHHHHHH-HCCCCccchhhHHhHHhhhCCCCCCC--CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccH
Q 011605 35 LDPRLKVALQ-NMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (481)
Q Consensus 35 l~~~l~~~~~-~~~~~~~~~~Q~~~~~~~~~~~~~~~--~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (481)
+++...+.+. .++| .++++|.++++.++..+..++ +++++++||+|||++++.++...+.. +.+++|++||+
T Consensus 588 ~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~----g~~vlvlvPt~ 662 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN----HKQVAVLVPTT 662 (1151)
T ss_dssp CCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT----TCEEEEECSSH
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh----CCeEEEEechH
Confidence 4555555554 5788 579999999999886444354 89999999999999998877765443 34899999999
Q ss_pred HHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcC-CCcEEEeCchHHHHHHhcC
Q 011605 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINAT 190 (481)
Q Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ili~T~~~l~~~l~~~ 190 (481)
+|+.|+++.+.+.+...++.+..+++.......... +..+.. .++|+|+||+.+..
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~------------------~~~l~~g~~dIvV~T~~ll~~----- 719 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI------------------LAEVAEGKIDILIGTHKLLQS----- 719 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHH------------------HHHHHTTCCSEEEECTHHHHS-----
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHH------------------HHHHhcCCCCEEEECHHHHhC-----
Confidence 999999999999888778888888887655443222 122333 48999999986632
Q ss_pred CCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeee
Q 011605 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (481)
Q Consensus 191 ~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 270 (481)
...+.++++|||||+|++... ....+.... ...+++
T Consensus 720 -~~~~~~l~lvIiDEaH~~g~~-----~~~~l~~l~--------------------------------------~~~~vl 755 (1151)
T 2eyq_A 720 -DVKFKDLGLLIVDEEHRFGVR-----HKERIKAMR--------------------------------------ANVDIL 755 (1151)
T ss_dssp -CCCCSSEEEEEEESGGGSCHH-----HHHHHHHHH--------------------------------------TTSEEE
T ss_pred -CccccccceEEEechHhcChH-----HHHHHHHhc--------------------------------------CCCCEE
Confidence 245788999999999986332 122222211 233789
Q ss_pred eeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhc-CCCeEEEEecchhhHHHHH
Q 011605 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLC 349 (481)
Q Consensus 271 ~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~ 349 (481)
++|||+.+.........+.+...+...... ...+..+ .....+......+++.. .+++++|||++++.++.++
T Consensus 756 ~lSATp~p~~l~~~~~~~~~~~~i~~~~~~---r~~i~~~---~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~ 829 (1151)
T 2eyq_A 756 TLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTF---VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 829 (1151)
T ss_dssp EEESSCCCHHHHHHHTTTSEEEECCCCCCB---CBCEEEE---EEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHH
T ss_pred EEcCCCChhhHHHHHhcCCCceEEecCCCC---ccccEEE---EecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHH
Confidence 999998765544444444333322221111 0011111 11112223333344333 5789999999999999999
Q ss_pred HHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCC-CCChhHHHHHhhhccc
Q 011605 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK-PAYIKTYIHRAGRTAR 428 (481)
Q Consensus 350 ~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~-~~s~~~~~Q~~GR~~R 428 (481)
+.|++.. .+..+..+||+|+..+|+++++.|++|+.+|||||+++++|+|+|++++||+++. +.+..+|.||+||+||
T Consensus 830 ~~L~~~~-p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR 908 (1151)
T 2eyq_A 830 ERLAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 908 (1151)
T ss_dssp HHHHHHC-TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCB
T ss_pred HHHHHhC-CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCc
Confidence 9998762 1267899999999999999999999999999999999999999999999999887 5688999999999999
Q ss_pred CCCCccEEEEeecc
Q 011605 429 AGQLGRCFTLLHKD 442 (481)
Q Consensus 429 ~~~~g~~~~~~~~~ 442 (481)
.|+.|.|++++...
T Consensus 909 ~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 909 SHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTBCEEEEEEECCG
T ss_pred CCCceEEEEEECCc
Confidence 99999999998765
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=8.5e-38 Score=326.80 Aligned_cols=339 Identities=19% Similarity=0.236 Sum_probs=216.1
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhcc--CCccEEEEcccHHHHHHH-HHHHHHhcc
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQV-KDVFAAIAP 126 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~--~~~~~lil~Pt~~L~~q~-~~~~~~~~~ 126 (481)
.|+++|.++++.++. ++++++.+|||+|||++++++++..+..+.. .+.++||++|+++|+.|| .+.+++++.
T Consensus 7 ~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 7 QLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 799999999999887 7899999999999999999999888776532 235899999999999999 999999876
Q ss_pred ccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhc-----CCCcccCCccEE
Q 011605 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-----TRGFTLEHLCYL 201 (481)
Q Consensus 127 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~-----~~~~~~~~~~~i 201 (481)
. ++.+..++|+........ .....++|+|+||+.|.+.+.. ...+.+..+++|
T Consensus 83 ~-~~~v~~~~g~~~~~~~~~---------------------~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lv 140 (699)
T 4gl2_A 83 K-WYRVIGLSGDTQLKISFP---------------------EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLI 140 (699)
T ss_dssp T-TSCEEEEC----CCCCHH---------------------HHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEE
T ss_pred c-CceEEEEeCCcchhhHHH---------------------hhhcCCCEEEECHHHHHHHHhccccccccceecccCcEE
Confidence 5 478888888875432211 1224579999999999988742 223567889999
Q ss_pred EEechhHhhHHHHhhhH-HHHHHh-cccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccC
Q 011605 202 VVDETDRLLREAYQAWL-PTVLQL-TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (481)
Q Consensus 202 VvDE~H~l~~~~~~~~~-~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~ 279 (481)
||||||++........+ ..+... ..... . ........+..+++++|||+...
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~~~~-------------------------~-~~~~~~~~~~~~il~lTATp~~~ 194 (699)
T 4gl2_A 141 IIDECHHTNKEAVYNNIMRHYLMQKLKNNR-------------------------L-KKENKPVIPLPQILGLTASPGVG 194 (699)
T ss_dssp EEESGGGCBTTBSSCSHHHHHHHHHHHHHH-------------------------H-HC----CCCCCEEEEECSCCCCC
T ss_pred EEECccccCccchHHHHHHHHHHhhhcccc-------------------------c-ccccccCCCCCEEEEeccccccc
Confidence 99999987443222111 111111 00000 0 00000111344789999999863
Q ss_pred ch--------hhh---cc-cc-----------------cCCcee--ecCCccc---------------------cCcc-c
Q 011605 280 PN--------KLA---QL-DL-----------------HHPLFL--TTGETRY---------------------KLPE-R 306 (481)
Q Consensus 280 ~~--------~~~---~~-~~-----------------~~~~~~--~~~~~~~---------------------~~~~-~ 306 (481)
.. ... .. .. ..+... ....... .... .
T Consensus 195 ~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g 274 (699)
T 4gl2_A 195 GATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFG 274 (699)
T ss_dssp SCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSS
T ss_pred ccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhcc
Confidence 11 000 00 00 000000 0000000 0000 0
Q ss_pred ---ccc--------------------------------------------------------------------------
Q 011605 307 ---LES-------------------------------------------------------------------------- 309 (481)
Q Consensus 307 ---~~~-------------------------------------------------------------------------- 309 (481)
+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (699)
T 4gl2_A 275 TQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDET 354 (699)
T ss_dssp SHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchh
Confidence 000
Q ss_pred -----------------cccc-cCCCchHHHHHHHHHh----cC-CCeEEEEecchhhHHHHHHHHhhcc---ccceeEE
Q 011605 310 -----------------YKLI-CESKLKPLYLVALLQS----LG-EEKCIVFTSSVESTHRLCTLLNHFG---ELRIKIK 363 (481)
Q Consensus 310 -----------------~~~~-~~~~~k~~~l~~~l~~----~~-~~~~lVf~~s~~~~~~l~~~L~~~~---~~~~~~~ 363 (481)
.... .....|...+..++.. .. ++++||||+++..++.+++.|++.. ..+..+.
T Consensus 355 ~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~ 434 (699)
T 4gl2_A 355 DRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAH 434 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CE
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceE
Confidence 0000 0011222222233322 23 7899999999999999999998751 1137889
Q ss_pred Ecccc--------cChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccE
Q 011605 364 EYSGL--------QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435 (481)
Q Consensus 364 ~~~~~--------~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~ 435 (481)
.+||+ |+..+|.++++.|++|+.+|||||+++++|+|+|++++||+|++|+|+..|+||+||+||.| +.+
T Consensus 435 ~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~ 512 (699)
T 4gl2_A 435 HLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STY 512 (699)
T ss_dssp ECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEE
T ss_pred EEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceE
Confidence 99999 99999999999999999999999999999999999999999999999999999999986654 444
Q ss_pred EEEeecc
Q 011605 436 FTLLHKD 442 (481)
Q Consensus 436 ~~~~~~~ 442 (481)
++++...
T Consensus 513 ~l~~~~~ 519 (699)
T 4gl2_A 513 VLVAHSG 519 (699)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 4444433
No 38
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.2e-37 Score=308.55 Aligned_cols=289 Identities=25% Similarity=0.312 Sum_probs=213.4
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (481)
.|+++|.+++..++. ++++++++|||+|||++++.++... +.++||++|+++|+.||.+++.++ +
T Consensus 93 ~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~~~~~~~~----~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----G 157 (472)
T ss_dssp CBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHHHHHGGGG----C
T ss_pred CcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHHHHHHHhC----C
Confidence 799999999998876 5679999999999999998877653 348999999999999999998884 6
Q ss_pred ce-EEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 130 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 130 ~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
+. +..+.|+.. ...+|+|+||+.+...+... ..++++||+||+|+
T Consensus 158 ~~~v~~~~g~~~------------------------------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~ 203 (472)
T 2fwr_A 158 EEYVGEFSGRIK------------------------------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHH 203 (472)
T ss_dssp GGGEEEBSSSCB------------------------------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGG
T ss_pred CcceEEECCCcC------------------------------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcC
Confidence 77 888887654 23589999999998766431 24589999999999
Q ss_pred hhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCc--------
Q 011605 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-------- 280 (481)
Q Consensus 209 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~-------- 280 (481)
+.+..+.. +...+ +..+.+++|||+....
T Consensus 204 ~~~~~~~~----~~~~~---------------------------------------~~~~~l~lSATp~~~~~~~~~l~~ 240 (472)
T 2fwr_A 204 LPAESYVQ----IAQMS---------------------------------------IAPFRLGLTATFEREDGRHEILKE 240 (472)
T ss_dssp TTSTTTHH----HHHTC---------------------------------------CCSEEEEEESCCCCTTSGGGSHHH
T ss_pred CCChHHHH----HHHhc---------------------------------------CCCeEEEEecCccCCCCHHHHHHH
Confidence 87655442 22222 1225678888886321
Q ss_pred -----------hhhhcccccCCceeec--C--Ccc---------------------ccCccccccc--------------
Q 011605 281 -----------NKLAQLDLHHPLFLTT--G--ETR---------------------YKLPERLESY-------------- 310 (481)
Q Consensus 281 -----------~~~~~~~~~~~~~~~~--~--~~~---------------------~~~~~~~~~~-------------- 310 (481)
.......+..+..... . ... .........+
T Consensus 241 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (472)
T 2fwr_A 241 VVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEAL 320 (472)
T ss_dssp HTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTT
T ss_pred HhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHH
Confidence 1111111111110000 0 000 0000000000
Q ss_pred -------ccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhc
Q 011605 311 -------KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (481)
Q Consensus 311 -------~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 383 (481)
........|...+.+++....++++||||++...++.+++.|. +..+||+++..+|.++++.|++
T Consensus 321 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------~~~~~g~~~~~~R~~~~~~F~~ 392 (472)
T 2fwr_A 321 RAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------IPAITHRTSREEREEILEGFRT 392 (472)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------CCBCCSSSCSHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------cceeeCCCCHHHHHHHHHHHhC
Confidence 0112344567788888888888999999999999999998874 4568999999999999999999
Q ss_pred CCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCC-ccEEEE
Q 011605 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL-GRCFTL 438 (481)
Q Consensus 384 g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~-g~~~~~ 438 (481)
|+.+|||+|+++++|+|+|++++||+++.++++..|.|++||+||.|+. +.+++|
T Consensus 393 g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 393 GRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999865 555554
No 39
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=4.1e-37 Score=309.64 Aligned_cols=311 Identities=18% Similarity=0.190 Sum_probs=221.9
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
..|+++|.+++..++. +.++++++|||+|||++++.++...+..+ +.++||++|+++|+.||.+.+++++...
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC---SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC---CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 3899999999999886 68899999999999999988877766543 3489999999999999999999986555
Q ss_pred CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
+..+..+.|+...... .....+|+|+||+.+... ....+.++++||+||+|+
T Consensus 185 ~~~v~~~~~~~~~~~~------------------------~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~ 236 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK------------------------YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHL 236 (510)
T ss_dssp GGGEEECGGGCCTTGG------------------------GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGG
T ss_pred ccceEEEecCCccccc------------------------cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcC
Confidence 5677777777653321 234579999999976442 224567899999999999
Q ss_pred hhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhc-cc
Q 011605 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LD 287 (481)
Q Consensus 209 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~-~~ 287 (481)
+.... +..++..+. +..+.+++|||+......... ..
T Consensus 237 ~~~~~----~~~il~~~~--------------------------------------~~~~~l~lSATp~~~~~~~~~~~~ 274 (510)
T 2oca_A 237 ATGKS----ISSIISGLN--------------------------------------NCMFKFGLSGSLRDGKANIMQYVG 274 (510)
T ss_dssp CCHHH----HHHHGGGCT--------------------------------------TCCEEEEEESCGGGCSSCHHHHHH
T ss_pred CCccc----HHHHHHhcc--------------------------------------cCcEEEEEEeCCCCCcccHHHhHH
Confidence 86532 333333221 223688999999665433111 11
Q ss_pred ccCCceeecCCccc-----cCc--------------------cccc-ccccccCCCchHHHHHHHHHhc---CCCeEEEE
Q 011605 288 LHHPLFLTTGETRY-----KLP--------------------ERLE-SYKLICESKLKPLYLVALLQSL---GEEKCIVF 338 (481)
Q Consensus 288 ~~~~~~~~~~~~~~-----~~~--------------------~~~~-~~~~~~~~~~k~~~l~~~l~~~---~~~~~lVf 338 (481)
+..+.......... ..+ ..+. .+........+...+.+++... ...++|||
T Consensus 275 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf 354 (510)
T 2oca_A 275 MFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMF 354 (510)
T ss_dssp HHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 11111111111000 000 0000 0111222223444455555443 34455666
Q ss_pred ecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEc-cccccCCCCCCCcEEEEcCCCCChh
Q 011605 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIK 417 (481)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t-~~l~~Gvdl~~~~~Vi~~~~~~s~~ 417 (481)
++ +.+++.+++.|.+.+ ..+..+||+++..+|.++++.|++|+.+||||| +++++|+|+|++++||++++++++.
T Consensus 355 ~~-~~~~~~l~~~L~~~~---~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~ 430 (510)
T 2oca_A 355 KH-VSHGKAIFDLIKNEY---DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKI 430 (510)
T ss_dssp SS-HHHHHHHHHHHHTTC---SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCC
T ss_pred ec-HHHHHHHHHHHHHcC---CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHH
Confidence 65 999999999999876 488999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCccEEEEee
Q 011605 418 TYIHRAGRTARAGQLGRCFTLLH 440 (481)
Q Consensus 418 ~~~Q~~GR~~R~~~~g~~~~~~~ 440 (481)
.|.|++||+||.|+.+.++++++
T Consensus 431 ~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 431 IVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHHhcccccCCCCceEEEEE
Confidence 99999999999998874444444
No 40
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.5e-36 Score=303.64 Aligned_cols=369 Identities=19% Similarity=0.196 Sum_probs=251.4
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 45 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.+|| .|++.|..+++.++. |+ +..++||+|||++|.+|++..... +..++|++||++||.|..+++..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~----G~--Iaea~TGeGKTlaf~LP~~l~aL~----g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHD----GN--IAEMKTGEGKTLTSTLPVYLNALT----GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHT----TS--EEECCTTSCHHHHHHHHHHHHHTT----SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhC----CC--EEEccCCcHHHHHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4899 999999999998875 66 999999999999999998743332 457999999999999999999999
Q ss_pred ccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcC-----CCcccCCc
Q 011605 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHL 198 (481)
Q Consensus 125 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~-----~~~~~~~~ 198 (481)
+..+|+++.++.|+.+...... ..+++|+|+||+.| .+++... ....++.+
T Consensus 148 ~~~lgl~v~~i~gg~~~~~r~~-----------------------~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~ 204 (844)
T 1tf5_A 148 FEFLGLTVGLNLNSMSKDEKRE-----------------------AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPL 204 (844)
T ss_dssp HHHTTCCEEECCTTSCHHHHHH-----------------------HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC
T ss_pred HhhcCCeEEEEeCCCCHHHHHH-----------------------hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCC
Confidence 9999999999999986543322 12469999999999 5555432 12457889
Q ss_pred cEEEEechhHhh-HHH---------------HhhhHHHHHHhcccc--------ccc-------------------cccc
Q 011605 199 CYLVVDETDRLL-REA---------------YQAWLPTVLQLTRSD--------NEN-------------------RFSD 235 (481)
Q Consensus 199 ~~iVvDE~H~l~-~~~---------------~~~~~~~l~~~~~~~--------~~~-------------------~~~~ 235 (481)
.++|+||||.++ +.+ +...+..++..+... ..+ .|+.
T Consensus 205 ~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsa 284 (844)
T 1tf5_A 205 HFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDV 284 (844)
T ss_dssp CEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSG
T ss_pred CEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCC
Confidence 999999999987 543 556666666665420 000 0110
Q ss_pred cccccccccc----chh-------hhhc----------ccc-c----------------cccCCCC----C---------
Q 011605 236 ASTFLPSAFG----SLK-------TIRR----------CGV-E----------------RGFKDKP----Y--------- 264 (481)
Q Consensus 236 ~~~~~~~~~~----~~~-------~~~~----------~~~-~----------------~~~~~~~----~--------- 264 (481)
....+...+. ... ++-. ++. . ....-.. .
T Consensus 285 t~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~f 364 (844)
T 1tf5_A 285 KHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYF 364 (844)
T ss_dssp GGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHH
Confidence 0000000000 000 0000 000 0 0000000 0
Q ss_pred -cceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHh--cCCCeEEEEecc
Q 011605 265 -PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSS 341 (481)
Q Consensus 265 -~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s 341 (481)
--.++..+|+|.......+...+..+...+... .+.. ..-...........|...+...+.. ..+.++||||+|
T Consensus 365 r~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn--~p~~-r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s 441 (844)
T 1tf5_A 365 RMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN--RPVV-RDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 441 (844)
T ss_dssp TTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCS--SCCC-CEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HHHhhhccCCcccchhHHHHHHHhCCceEEecCC--CCcc-cccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 001345677887655444444443332222211 1111 1111112223445677777776654 246789999999
Q ss_pred hhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCC--------CCcEEEEcCCC
Q 011605 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE--------GVNNVVNYDKP 413 (481)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~--------~~~~Vi~~~~~ 413 (481)
++.++.+++.|...| +.+..+||.++..+|..+.++|+.| .|+|||+++++|+|++ +..+||+++.|
T Consensus 442 ~~~se~Ls~~L~~~g---i~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p 516 (844)
T 1tf5_A 442 VETSELISKLLKNKG---IPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERH 516 (844)
T ss_dssp HHHHHHHHHHHHTTT---CCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCC
T ss_pred HHHHHHHHHHHHHCC---CCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCC
Confidence 999999999999877 8899999999888877666666555 7999999999999999 78899999999
Q ss_pred CChhHHHHHhhhcccCCCCccEEEEeecchH-------HHHHHHHHHhc
Q 011605 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKAD 455 (481)
Q Consensus 414 ~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~-------~~~~~~~~~~~ 455 (481)
.|...|.||+||+||.|.+|.+++|++..|. +....+++.+.
T Consensus 517 ~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~l~r~f~~~~~~~~~~~~~ 565 (844)
T 1tf5_A 517 ESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTMAMLDRFG 565 (844)
T ss_dssp SSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSHHHHHHHHHHHHT
T ss_pred CCHHHHHhhcCccccCCCCCeEEEEecHHHHHHHHHhHHHHHHHHHhcC
Confidence 9999999999999999999999999987653 34566666654
No 41
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.5e-35 Score=305.71 Aligned_cols=329 Identities=18% Similarity=0.230 Sum_probs=229.3
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHH-hccCCccEEEEcccHHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDL 113 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~-~~~~~~~~lil~Pt~~L 113 (481)
+++.+.+.+.+.+ ..|.+.|++++..++. .+++++++||||+|||.. ++++-.... ....+.++++++|+++|
T Consensus 79 l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~---~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~~~g~~ilvl~P~r~L 152 (773)
T 2xau_A 79 FTPKYVDILKIRR-ELPVHAQRDEFLKLYQ---NNQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQVACTQPRRVA 152 (773)
T ss_dssp CCHHHHHHHHHHT-TSGGGGGHHHHHHHHH---HCSEEEEECCTTSSHHHH--HHHHHHHHHCGGGGTCEEEEEESCHHH
T ss_pred CCHHHHHHHHHhh-cCChHHHHHHHHHHHh---CCCeEEEECCCCCCHHHH--HHHHHHHhccccCCCceEEecCchHHH
Confidence 8999999999888 6899999999988875 356799999999999993 333311111 11124579999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCc
Q 011605 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~ 193 (481)
+.|+.+.+.... +..+....|...... .......+|+++|++.+.+.+... .
T Consensus 153 a~q~~~~l~~~~---~~~v~~~vG~~i~~~-----------------------~~~~~~~~I~v~T~G~l~r~l~~~--~ 204 (773)
T 2xau_A 153 AMSVAQRVAEEM---DVKLGEEVGYSIRFE-----------------------NKTSNKTILKYMTDGMLLREAMED--H 204 (773)
T ss_dssp HHHHHHHHHHHT---TCCBTTTEEEEETTE-----------------------EECCTTCSEEEEEHHHHHHHHHHS--T
T ss_pred HHHHHHHHHHHh---CCchhheecceeccc-----------------------cccCCCCCEEEECHHHHHHHHhhC--c
Confidence 999887665443 333322222110000 001135689999999998877652 4
Q ss_pred ccCCccEEEEechhH-hhHHH-HhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeee
Q 011605 194 TLEHLCYLVVDETDR-LLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (481)
Q Consensus 194 ~~~~~~~iVvDE~H~-l~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 271 (481)
.+.++++||+||+|. .++.. ....+..+.... +..++++
T Consensus 205 ~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~---------------------------------------~~~~iIl 245 (773)
T 2xau_A 205 DLSRYSCIILDEAHERTLATDILMGLLKQVVKRR---------------------------------------PDLKIII 245 (773)
T ss_dssp TCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC---------------------------------------TTCEEEE
T ss_pred cccCCCEEEecCccccccchHHHHHHHHHHHHhC---------------------------------------CCceEEE
Confidence 588899999999996 44422 233333333222 2447999
Q ss_pred eceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchH----HHHHHHHHhcCCCeEEEEecchhhHHH
Q 011605 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP----LYLVALLQSLGEEKCIVFTSSVESTHR 347 (481)
Q Consensus 272 ~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~----~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (481)
+|||.. ...+.......+. +....... .+..+.......... ..+..+......+++||||++..+++.
T Consensus 246 ~SAT~~--~~~l~~~~~~~~v-i~v~gr~~----pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~ 318 (773)
T 2xau_A 246 MSATLD--AEKFQRYFNDAPL-LAVPGRTY----PVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIED 318 (773)
T ss_dssp EESCSC--CHHHHHHTTSCCE-EECCCCCC----CEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHH
T ss_pred Eecccc--HHHHHHHhcCCCc-ccccCccc----ceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHH
Confidence 999994 2333332222232 22222111 122222222222222 223333334467899999999999999
Q ss_pred HHHHHhhc--------cccceeEEEcccccChHHHHHHHHHHh-----cCCceEEEEccccccCCCCCCCcEEEEcCC--
Q 011605 348 LCTLLNHF--------GELRIKIKEYSGLQRQSVRSKTLKAFR-----EGKIQVLVSSDAMTRGMDVEGVNNVVNYDK-- 412 (481)
Q Consensus 348 l~~~L~~~--------~~~~~~~~~~~~~~~~~~r~~~~~~f~-----~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~-- 412 (481)
+++.|.+. ...+..+..+||+++..+|..+++.|+ +|..+|||||+++++|+|+|++++||+++.
T Consensus 319 l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k 398 (773)
T 2xau_A 319 AVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSK 398 (773)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEE
T ss_pred HHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCcc
Confidence 99999751 123478999999999999999999999 999999999999999999999999999887
Q ss_pred ----------------CCChhHHHHHhhhcccCCCCccEEEEeecchH
Q 011605 413 ----------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 413 ----------------~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 444 (481)
|.|..+|.||+||+||. +.|.|+.++++.+.
T Consensus 399 ~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 399 QKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred ceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 88999999999999998 78999999987665
No 42
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=9e-34 Score=285.53 Aligned_cols=369 Identities=18% Similarity=0.168 Sum_probs=253.4
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 45 ~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
.+|+ .|++.|..++..++. |+ +..++||+|||+++.+|++-.... +..++|++||+.|+.|..+++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~----G~--Iaem~TGeGKTLa~~LP~~l~aL~----g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHL----GN--VAEMKTGEGKTLTCVLPAYLNALA----GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHT----TE--EEECCTTSCHHHHTHHHHHHHHTT----TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhc----CC--EEEecCCCccHHHHHHHHHHHHHh----CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4798 999999999998775 55 999999999999999998654443 347999999999999999999999
Q ss_pred ccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcCC-----CcccCCc
Q 011605 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHL 198 (481)
Q Consensus 125 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~~-----~~~~~~~ 198 (481)
+..+|++++++.|+.+....... .+++|+++||+.| .+++.... ...++.+
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r~~~-----------------------y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l 232 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDERRVA-----------------------YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGH 232 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHHHHH-----------------------HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC
T ss_pred HhhcCCeEEEEeCCCCHHHHHHh-----------------------cCCCEEEECchHhhHHHHHhhhhccHhhhccCCC
Confidence 99999999999998875433221 2469999999999 66665532 3457889
Q ss_pred cEEEEechhHhhH----------------HHHhhhHHHHHHhcccc--------ccc-------------------cccc
Q 011605 199 CYLVVDETDRLLR----------------EAYQAWLPTVLQLTRSD--------NEN-------------------RFSD 235 (481)
Q Consensus 199 ~~iVvDE~H~l~~----------------~~~~~~~~~l~~~~~~~--------~~~-------------------~~~~ 235 (481)
.++|+||||.++. .++...+..++..+... ..+ .|+.
T Consensus 233 ~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsa 312 (922)
T 1nkt_A 233 HYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEA 312 (922)
T ss_dssp CEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCS
T ss_pred CEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCC
Confidence 9999999999983 24667777777776420 000 1111
Q ss_pred cccccccccc----chhhhhc-------cccc---ccc-----C----------------CC-------C--------C-
Q 011605 236 ASTFLPSAFG----SLKTIRR-------CGVE---RGF-----K----------------DK-------P--------Y- 264 (481)
Q Consensus 236 ~~~~~~~~~~----~~~~~~~-------~~~~---~~~-----~----------------~~-------~--------~- 264 (481)
....+...+. ....+.+ ++.. ..+ . .. . +
T Consensus 313 t~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyf 392 (922)
T 1nkt_A 313 ANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYF 392 (922)
T ss_dssp TTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHH
Confidence 0000000000 0000000 0000 000 0 00 0 0
Q ss_pred -cceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhc--CCCeEEEEecc
Q 011605 265 -PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSS 341 (481)
Q Consensus 265 -~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s 341 (481)
--.++..||+|.......+...+..+...++.. .+..... ....+......|...+...+... .+.++||||+|
T Consensus 393 r~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn--~p~~R~d-~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~S 469 (922)
T 1nkt_A 393 RLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTN--MPMIRED-QSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTS 469 (922)
T ss_dssp TTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCS--SCCCCEE-CCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred HhhhhhhccccCchhHHHHHHHHhCCCeEEeCCC--CCccccc-CCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 001345677777554444444433332222221 1111111 11122334456777776666442 46689999999
Q ss_pred hhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCC-----------------
Q 011605 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV----------------- 404 (481)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~----------------- 404 (481)
+..++.+++.|++.| +.+..+|+.+...++..+.++|+.| .|+|||+++++|+|++..
T Consensus 470 ie~sE~Ls~~L~~~G---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~ 544 (922)
T 1nkt_A 470 VERSEYLSRQFTKRR---IPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLD 544 (922)
T ss_dssp HHHHHHHHHHHHHTT---CCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhcccc
Confidence 999999999999887 8899999999887777777888877 799999999999999964
Q ss_pred -----------------------------------cEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchH-----
Q 011605 405 -----------------------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV----- 444 (481)
Q Consensus 405 -----------------------------------~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~----- 444 (481)
.+||+++.|.|...|.|++||+||.|.+|.++.|++..|.
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~r~f 624 (922)
T 1nkt_A 545 PVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRF 624 (922)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHHHT
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHHHHh
Confidence 4899999999999999999999999999999999987654
Q ss_pred --HHHHHHHHHhc
Q 011605 445 --KRFKKLLQKAD 455 (481)
Q Consensus 445 --~~~~~~~~~~~ 455 (481)
+++.++++.+.
T Consensus 625 ~~~~~~~~~~~~~ 637 (922)
T 1nkt_A 625 NGAALETLLTRLN 637 (922)
T ss_dssp THHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhC
Confidence 34666666664
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.1e-35 Score=289.37 Aligned_cols=288 Identities=16% Similarity=0.190 Sum_probs=204.4
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCE-EEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 47 GISSLFPVQVAVWQETIGPGLFERDL-CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 47 ~~~~~~~~Q~~~~~~~~~~~~~~~~~-l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
|+.++.+.|. +++.++. +++. ++.+|||+|||++++++++..+.. .+.+++|++||++|+.|+.+.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~----~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFR----KKRLTIMDLHPGAGKTKRILPSIVREALL---RRLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGS----TTCEEEECCCTTSSCCTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHHh----cCCeEEEECCCCCCHhhHHHHHHHHHHHh---cCCcEEEECCCHHHHHHHHHHhc---
Confidence 6788999984 6666665 6665 999999999999998988876655 24589999999999999988775
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEec
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE 205 (481)
+..+....+.... ....+..|.++|++.+.+.+... ..+.++++||+||
T Consensus 70 ---g~~v~~~~~~~~~--------------------------~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDE 118 (451)
T 2jlq_A 70 ---GLPIRYQTPAVKS--------------------------DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDE 118 (451)
T ss_dssp ---TSCEEECCTTCSC--------------------------CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEET
T ss_pred ---Cceeeeeeccccc--------------------------cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeC
Confidence 3333222211100 01134578899999987776543 4478899999999
Q ss_pred hhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhc
Q 011605 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (481)
Q Consensus 206 ~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~ 285 (481)
||.+ +..+......+...... +..+++++|||++........
T Consensus 119 ah~~-~~~~~~~~~~~~~~~~~-------------------------------------~~~~~i~~SAT~~~~~~~~~~ 160 (451)
T 2jlq_A 119 AHFT-DPCSVAARGYISTRVEM-------------------------------------GEAAAIFMTATPPGSTDPFPQ 160 (451)
T ss_dssp TTCC-SHHHHHHHHHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSCC
T ss_pred CccC-CcchHHHHHHHHHhhcC-------------------------------------CCceEEEEccCCCccchhhhc
Confidence 9976 33333333333222110 345899999999765433221
Q ss_pred ccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEc
Q 011605 286 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365 (481)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~ 365 (481)
..+....... ..+. ..+. . +...+.. ..+++||||+++++++.+++.|++.+ ..+..+
T Consensus 161 ---~~~~~~~~~~---~~p~--~~~~------~----~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g---~~~~~l 218 (451)
T 2jlq_A 161 ---SNSPIEDIER---EIPE--RSWN------T----GFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSG---KRVIQL 218 (451)
T ss_dssp ---CSSCEEEEEC---CCCS--SCCS------S----SCHHHHH-CCSCEEEECSSHHHHHHHHHHHHTTT---CCEEEE
T ss_pred ---CCCceEecCc---cCCc--hhhH------H----HHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcC---CeEEEC
Confidence 2222221110 0010 0010 0 1122223 26799999999999999999999876 788888
Q ss_pred ccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcC--------------------CCCChhHHHHHhhh
Q 011605 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD--------------------KPAYIKTYIHRAGR 425 (481)
Q Consensus 366 ~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~--------------------~~~s~~~~~Q~~GR 425 (481)
|+.+. .++++.|++|+.+|||||+++++|+|+|+ ++||+++ .|.+..+|+||+||
T Consensus 219 h~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GR 293 (451)
T 2jlq_A 219 SRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGR 293 (451)
T ss_dssp CTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTT
T ss_pred CHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccc
Confidence 98754 57899999999999999999999999999 9999988 89999999999999
Q ss_pred cccCCC-CccEEEEeec
Q 011605 426 TARAGQ-LGRCFTLLHK 441 (481)
Q Consensus 426 ~~R~~~-~g~~~~~~~~ 441 (481)
+||.|+ .|.|++++..
T Consensus 294 aGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 294 IGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp SSCCTTCCCEEEEECSC
T ss_pred cCCCCCCCccEEEEeCC
Confidence 999998 7889888743
No 44
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.8e-34 Score=290.34 Aligned_cols=357 Identities=18% Similarity=0.162 Sum_probs=235.6
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|. .|++.|..++..++. |+ +..++||+|||+++.+|++..... +..++|++||++|+.|.+.++..++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~----G~--Iaem~TGsGKTlaf~LP~l~~~l~----g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNE----RC--IAEMRTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHS----SE--EEECCTTSCHHHHHHHHHHHHHTT----SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccC----Ce--eeeecCCchHHHHHHHHHHHHHHc----CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 675 899999999998775 55 999999999999999998854433 4579999999999999999999999
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcCC-----CcccCCcc
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~~-----~~~~~~~~ 199 (481)
..+|++++++.|+.+..... ...+++|+|+||+.| .+++.... ...++++.
T Consensus 140 ~~lgl~v~~i~GG~~~~~r~-----------------------~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~ 196 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAPAKR-----------------------EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLH 196 (853)
T ss_dssp HHTTCCEEECCTTCCHHHHH-----------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCC
T ss_pred HhcCCeEEEEeCCCCHHHHH-----------------------HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCc
Confidence 99999999999998754321 112469999999999 67766532 24578899
Q ss_pred EEEEechhHhh-HHH---------------HhhhHHHHHHhcccc-------------------ccc-------------
Q 011605 200 YLVVDETDRLL-REA---------------YQAWLPTVLQLTRSD-------------------NEN------------- 231 (481)
Q Consensus 200 ~iVvDE~H~l~-~~~---------------~~~~~~~l~~~~~~~-------------------~~~------------- 231 (481)
++|+||||.++ +.+ +...+..++..+... ..+
T Consensus 197 ~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~ 276 (853)
T 2fsf_A 197 YALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEE 276 (853)
T ss_dssp EEEESCHHHHTTTTTTCEEEEEEC--------------------------------------------------------
T ss_pred EEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHH
Confidence 99999999988 332 334445555444320 000
Q ss_pred -------------cccccccccccccc----chh-------hhhcccc-----------------ccccCCC--------
Q 011605 232 -------------RFSDASTFLPSAFG----SLK-------TIRRCGV-----------------ERGFKDK-------- 262 (481)
Q Consensus 232 -------------~~~~~~~~~~~~~~----~~~-------~~~~~~~-----------------~~~~~~~-------- 262 (481)
.|+.....+...+. ... ++-.++. ..+..+.
T Consensus 277 ~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~ 356 (853)
T 2fsf_A 277 LLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQ 356 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccce
Confidence 00000000000000 000 0000000 0000000
Q ss_pred ------CCc----------ceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHH
Q 011605 263 ------PYP----------RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326 (481)
Q Consensus 263 ------~~~----------~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 326 (481)
... -.++..||+|.......+...+..+...+++ ..+.. ..-....+......|...+...
T Consensus 357 I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPt--n~p~~-R~d~~d~v~~~~~~K~~al~~~ 433 (853)
T 2fsf_A 357 IQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPT--NRPMI-RKDLPDLVYMTEAEKIQAIIED 433 (853)
T ss_dssp CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCC--SSCCC-CEECCCEEESSHHHHHHHHHHH
T ss_pred ecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCC--CCCce-eecCCcEEEeCHHHHHHHHHHH
Confidence 000 0124466777655444444443332222221 11111 1111112334456677777777
Q ss_pred HHh-c-CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCC
Q 011605 327 LQS-L-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404 (481)
Q Consensus 327 l~~-~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~ 404 (481)
+.. + .+.++||||+|+..++.+++.|++.| +.+..+||.+...++..+.++|+.| .|+|||+++++|+|++..
T Consensus 434 i~~~~~~gqpvLVft~sie~se~Ls~~L~~~g---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~ 508 (853)
T 2fsf_A 434 IKERTAKGQPVLVGTISIEKSELVSNELTKAG---IKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLG 508 (853)
T ss_dssp HHHHHTTTCCEEEEESSHHHHHHHHHHHHHTT---CCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTT
T ss_pred HHHHhcCCCCEEEEECcHHHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCC
Confidence 654 2 46789999999999999999999887 8899999999888888888888888 699999999999999963
Q ss_pred -------------------------------------cEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchH
Q 011605 405 -------------------------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 405 -------------------------------------~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 444 (481)
.+||+++.|.|...|.|++||+||.|.+|.++.|++..|.
T Consensus 509 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 509 GSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp CCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred CchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5899999999999999999999999999999999987653
No 45
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.1e-35 Score=296.77 Aligned_cols=313 Identities=14% Similarity=0.108 Sum_probs=219.0
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
+++.+.+++.+. ...+.|.|+.+++.+ ..++++++.+|||+|||++++++++..+... +.++||++||++|+
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq~~~i~~l----~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~---~~~vLvl~PtreLa 228 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDYEVDEDIF----RKKRLTIMDLHPGAGKTKRILPSIVREALKR---RLRTLILAPTRVVA 228 (618)
T ss_dssp -----CEECBCC-CCCCCCCCCCCGGGG----STTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHH
T ss_pred chHHHHHHHhhc-cccCCCccccCHHHH----hcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC---CCeEEEEcChHHHH
Confidence 455544444432 467888887654443 3589999999999999999999998887653 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcc
Q 011605 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~ 194 (481)
.|+.+.+.. ..+....+.... ....+..+.++|.+.+.+.+... ..
T Consensus 229 ~Qi~~~l~~------~~v~~~~~~l~~--------------------------~~tp~~~i~~~t~~~l~~~l~~~--~~ 274 (618)
T 2whx_A 229 AEMEEALRG------LPIRYQTPAVKS--------------------------DHTGREIVDLMCHATFTTRLLSS--TR 274 (618)
T ss_dssp HHHHHHTTT------SCEEECCTTSSC--------------------------CCCSSSCEEEEEHHHHHHHHHHC--SS
T ss_pred HHHHHHhcC------CceeEeccccee--------------------------ccCCCceEEEEChHHHHHHHhcc--cc
Confidence 999877762 222211111000 00123367778888777655442 34
Q ss_pred cCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeece
Q 011605 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 274 (481)
++++++||+||||++ +.++...+..+...... +..+++++||
T Consensus 275 l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~-------------------------------------~~~q~il~SA 316 (618)
T 2whx_A 275 VPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM-------------------------------------GEAAAIFMTA 316 (618)
T ss_dssp CCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH-------------------------------------TSCEEEEECS
T ss_pred ccCCeEEEEECCCCC-CccHHHHHHHHHHHhcc-------------------------------------cCccEEEEEC
Confidence 788999999999987 66677777777665421 2348999999
Q ss_pred eeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhh
Q 011605 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~ 354 (481)
|+......+.. ..+..+..... .+. .+...+...+.+ ..+++||||++++.++.+++.|++
T Consensus 317 T~~~~~~~~~~---~~~~~~~v~~~---~~~------------~~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~ 377 (618)
T 2whx_A 317 TPPGSTDPFPQ---SNSPIEDIERE---IPE------------RSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRK 377 (618)
T ss_dssp SCTTCCCSSCC---CSSCEEEEECC---CCS------------SCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHH
T ss_pred CCchhhhhhhc---cCCceeeeccc---CCH------------HHHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHH
Confidence 99876544333 11211111100 000 000011222223 367999999999999999999998
Q ss_pred ccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEE--------------------EEcCCCC
Q 011605 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV--------------------VNYDKPA 414 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~V--------------------i~~~~~~ 414 (481)
.+ ..+..+||. +|.++++.|++|+.+|||||+++++|+|+| +++| |+++.|.
T Consensus 378 ~g---~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~ 449 (618)
T 2whx_A 378 SG---KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPV 449 (618)
T ss_dssp TT---CCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEEC
T ss_pred cC---CcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccC
Confidence 76 788889984 688899999999999999999999999997 8887 6677789
Q ss_pred ChhHHHHHhhhcccCCC-CccEEEEee---cchHHHHHHHHHHh
Q 011605 415 YIKTYIHRAGRTARAGQ-LGRCFTLLH---KDEVKRFKKLLQKA 454 (481)
Q Consensus 415 s~~~~~Q~~GR~~R~~~-~g~~~~~~~---~~~~~~~~~~~~~~ 454 (481)
+..+|+||+||+||.|. .|.|++++. ..+...+..+++.+
T Consensus 450 s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 450 TPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred CHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 99999999999999965 799999997 66665555555544
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=6.8e-36 Score=292.66 Aligned_cols=279 Identities=15% Similarity=0.159 Sum_probs=186.0
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHH
Q 011605 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146 (481)
Q Consensus 67 ~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 146 (481)
..++++++++|||+|||++++++++..+..+ +.+++|++||++|+.|+++.+..+ + +....+...
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~---~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~~~~------ 70 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARR---RLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQAFS------ 70 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTTTS----C--EEEESSCCC------
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc---CCeEEEEcchHHHHHHHHHHHhcC----C--eEEecccce------
Confidence 4589999999999999999999888877653 458999999999999999887743 2 222111110
Q ss_pred HHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhc-------CCCcccCCccEEEEechhHhhHHHHhhhHH
Q 011605 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-------TRGFTLEHLCYLVVDETDRLLREAYQAWLP 219 (481)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~-------~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~ 219 (481)
.++||+.+...+.. .....+.+++++|+||+|.+ +..+...+.
T Consensus 71 -----------------------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~ 120 (440)
T 1yks_A 71 -----------------------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARG 120 (440)
T ss_dssp -----------------------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHH
T ss_pred -----------------------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHH
Confidence 14444433221111 01134788999999999987 444433333
Q ss_pred HHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCc
Q 011605 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (481)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~ 299 (481)
.+...... ...+++++|||+......+.... .+.....
T Consensus 121 ~~~~~~~~-------------------------------------~~~~~l~~SAT~~~~~~~~~~~~--~~~~~~~--- 158 (440)
T 1yks_A 121 WAAHRARA-------------------------------------NESATILMTATPPGTSDEFPHSN--GEIEDVQ--- 158 (440)
T ss_dssp HHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSCCCS--SCEEEEE---
T ss_pred HHHHHhcc-------------------------------------CCceEEEEeCCCCchhhhhhhcC--CCeeEee---
Confidence 33332211 23489999999977654433311 1110000
Q ss_pred cccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHH
Q 011605 300 RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 379 (481)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~ 379 (481)
.......... +...+.+ .++++||||++++.++.+++.|++.+ ..+..+|| .+|.++++
T Consensus 159 ------------~~~~~~~~~~-~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~---~~v~~lhg----~~R~~~~~ 217 (440)
T 1yks_A 159 ------------TDIPSEPWNT-GHDWILA-DKRPTAWFLPSIRAANVMAASLRKAG---KSVVVLNR----KTFEREYP 217 (440)
T ss_dssp ------------CCCCSSCCSS-SCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTT---CCEEECCS----SSCC----
T ss_pred ------------eccChHHHHH-HHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcC---CCEEEecc----hhHHHHHh
Confidence 0000000011 1122222 26799999999999999999999876 78999999 35889999
Q ss_pred HHhcCCceEEEEccccccCCCCCCCcEEEE-------------------cCCCCChhHHHHHhhhcccC-CCCccEEEEe
Q 011605 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------------------YDKPAYIKTYIHRAGRTARA-GQLGRCFTLL 439 (481)
Q Consensus 380 ~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~-------------------~~~~~s~~~~~Q~~GR~~R~-~~~g~~~~~~ 439 (481)
.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|+||+||+||. |+.|.|++++
T Consensus 218 ~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 218 TIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp ----CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred hhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 99999999999999999999999 999986 78899999999999999997 6789999996
Q ss_pred ---ecchHHHHHHHHHHh
Q 011605 440 ---HKDEVKRFKKLLQKA 454 (481)
Q Consensus 440 ---~~~~~~~~~~~~~~~ 454 (481)
+..+...+..+...+
T Consensus 297 ~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 297 EPTSENNAHHVCWLEASM 314 (440)
T ss_dssp SCCCCCCTTBHHHHHHHH
T ss_pred ccCChhhhhhhhhhhHHh
Confidence 566665555555544
No 47
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=6.6e-34 Score=302.96 Aligned_cols=136 Identities=21% Similarity=0.202 Sum_probs=119.4
Q ss_pred CCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhh-ccccceeEEEcccccChHHHHHHHHHHhcCC--ceEEEEc
Q 011605 316 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSS 392 (481)
Q Consensus 316 ~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~iLv~t 392 (481)
...|...+..++....++++||||++...++.+++.|.+ .+ +.+..+||+|+..+|..+++.|++|+ .+|||||
T Consensus 487 ~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g---~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 487 FDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG---IRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp TSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTC---CCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred ccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 455788888888888889999999999999999999985 45 78999999999999999999999998 9999999
Q ss_pred cccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHh
Q 011605 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (481)
Q Consensus 393 ~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (481)
+++++|+|+|++++||++++|+++..|.|++||++|.|+.+.|+++.........+.+.+.+
T Consensus 564 ~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 564 EIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp CCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred chhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887776554444444444444
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.2e-34 Score=293.11 Aligned_cols=309 Identities=14% Similarity=0.147 Sum_probs=204.9
Q ss_pred HHHHCCCC-----ccchhhH-----HhHHhhhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc
Q 011605 42 ALQNMGIS-----SLFPVQV-----AVWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 42 ~~~~~~~~-----~~~~~Q~-----~~~~~~~~--~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (481)
.+..+||. .|++.|. ++++.++. .+..++++++++|||+|||++|+++++..+... +.+++|++|
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~---~~~~lilaP 278 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK---RLRTAVLAP 278 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT---TCCEEEEES
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---CCcEEEEcc
Confidence 33456766 8999999 66665541 112589999999999999999999988876653 458999999
Q ss_pred cHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhc
Q 011605 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (481)
Q Consensus 110 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~ 189 (481)
|++|+.|+.+.+..+ ++. ...+.... . ...+.-+-+.+...+.+.+..
T Consensus 279 Tr~La~Q~~~~l~~~----~i~--~~~~~l~~-------v-------------------~tp~~ll~~l~~~~l~~~l~~ 326 (673)
T 2wv9_A 279 TRVVAAEMAEALRGL----PVR--YLTPAVQR-------E-------------------HSGNEIVDVMCHATLTHRLMS 326 (673)
T ss_dssp SHHHHHHHHHHTTTS----CCE--ECCC---C-------C-------------------CCSCCCEEEEEHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC----Cee--eecccccc-------c-------------------CCHHHHHHHHHhhhhHHHHhc
Confidence 999999998877744 221 11111000 0 001112334444444443333
Q ss_pred CCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceee
Q 011605 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (481)
Q Consensus 190 ~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (481)
. ..++++++||+||+|++ +..+...+..+...... ...++
T Consensus 327 ~--~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~-------------------------------------~~~~v 366 (673)
T 2wv9_A 327 P--LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEA-------------------------------------GEAAA 366 (673)
T ss_dssp S--SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHT-------------------------------------TSCEE
T ss_pred c--cccccceEEEEeCCccc-CccHHHHHHHHHHhccc-------------------------------------cCCcE
Confidence 1 45788999999999987 22222222222222210 23489
Q ss_pred eeeceeeccCchhhhcccccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHH
Q 011605 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349 (481)
Q Consensus 270 v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~ 349 (481)
+++|||+......+.... .+...... ......... +...+.+ ..+++||||+++++++.++
T Consensus 367 l~~SAT~~~~i~~~~~~~--~~i~~v~~---------------~~~~~~~~~-~l~~l~~-~~~~~lVF~~s~~~~e~la 427 (673)
T 2wv9_A 367 IFMTATPPGTSDPFPDTN--SPVHDVSS---------------EIPDRAWSS-GFEWITD-YAGKTVWFVASVKMSNEIA 427 (673)
T ss_dssp EEECSSCTTCCCSSCCCS--SCEEEEEC---------------CCCSSCCSS-CCHHHHS-CCSCEEEECSSHHHHHHHH
T ss_pred EEEcCCCChhhhhhcccC--CceEEEee---------------ecCHHHHHH-HHHHHHh-CCCCEEEEECCHHHHHHHH
Confidence 999999986654433211 11110000 000000001 1112222 4789999999999999999
Q ss_pred HHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEE--------------------
Q 011605 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------------------- 409 (481)
Q Consensus 350 ~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~-------------------- 409 (481)
+.|++.+ ..+..+||. +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 428 ~~L~~~g---~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll 499 (673)
T 2wv9_A 428 QCLQRAG---KRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILS 499 (673)
T ss_dssp HHHHTTT---CCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEEC
T ss_pred HHHHhCC---CeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceec
Confidence 9999875 789999993 689999999999999999999999999999 999997
Q ss_pred cCCCCChhHHHHHhhhcccC-CCCccEEEEe---ecchHHHHHHHHH
Q 011605 410 YDKPAYIKTYIHRAGRTARA-GQLGRCFTLL---HKDEVKRFKKLLQ 452 (481)
Q Consensus 410 ~~~~~s~~~~~Q~~GR~~R~-~~~g~~~~~~---~~~~~~~~~~~~~ 452 (481)
++.|.+..+|+||+||+||. |+.|.|++++ +..+...+..++.
T Consensus 500 ~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~ 546 (673)
T 2wv9_A 500 VPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEA 546 (673)
T ss_dssp CSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHH
T ss_pred ccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHH
Confidence 56788999999999999998 7889999996 4555444444433
No 49
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.1e-34 Score=293.25 Aligned_cols=318 Identities=17% Similarity=0.150 Sum_probs=187.2
Q ss_pred ccchhhHHhHHhhhCCCCCC-CCEEEECCCCchhHHHhHHHHHHHHHHh-----ccCCccEEEEcccHHHHHHHH-HHHH
Q 011605 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRDLALQVK-DVFA 122 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~-~~~l~~~~tG~GKT~~~~~~~~~~l~~~-----~~~~~~~lil~Pt~~L~~q~~-~~~~ 122 (481)
.|+++|.++++.++..+..+ ++++++++||+|||++++..+...+..+ ...+.++||++|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 79999999999987655444 5589999999999999765444433332 014678999999999999998 6666
Q ss_pred HhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcC---CCcccCCcc
Q 011605 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT---RGFTLEHLC 199 (481)
Q Consensus 123 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~---~~~~~~~~~ 199 (481)
.+ +..+..+.+.. ...+.+|+|+||+.+....... ..+....++
T Consensus 258 ~~----~~~~~~~~~~~-----------------------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~ 304 (590)
T 3h1t_A 258 PF----GDARHKIEGGK-----------------------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFD 304 (590)
T ss_dssp TT----CSSEEECCC-------------------------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCS
T ss_pred hc----chhhhhhhccC-----------------------------CCCCCcEEEEEhhhhccccccccccccCCCCccC
Confidence 55 33333333221 1245699999999998765321 123456789
Q ss_pred EEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccC
Q 011605 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (481)
Q Consensus 200 ~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~ 279 (481)
+||+||||++..... ..+..++..+ +..+.+++|||+...
T Consensus 305 lvIiDEaH~~~~~~~-~~~~~il~~~---------------------------------------~~~~~l~lTATP~~~ 344 (590)
T 3h1t_A 305 LIIIDECHRGSARDN-SNWREILEYF---------------------------------------EPAFQIGMTATPLRE 344 (590)
T ss_dssp EEEESCCC----------CHHHHHHS---------------------------------------TTSEEEEEESSCSCT
T ss_pred EEEEECCccccccch-HHHHHHHHhC---------------------------------------CcceEEEeccccccc
Confidence 999999999865321 2233333333 123688999998754
Q ss_pred chhhhcccccCCce-----------------eecCCccccCc-------------ccccccccccCC-------CchHH-
Q 011605 280 PNKLAQLDLHHPLF-----------------LTTGETRYKLP-------------ERLESYKLICES-------KLKPL- 321 (481)
Q Consensus 280 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~-------------~~~~~~~~~~~~-------~~k~~- 321 (481)
........+..+.. ........... ............ ..+..
T Consensus 345 ~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 424 (590)
T 3h1t_A 345 DNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDA 424 (590)
T ss_dssp TTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHH
T ss_pred cchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHH
Confidence 33211111111110 00000000000 000000000000 00111
Q ss_pred ---HHHHHHHhc-CCCeEEEEecchhhHHHHHHHHhhccc-----cceeEEEcccccChHHHHHHHHHHhcCCce---EE
Q 011605 322 ---YLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGE-----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQ---VL 389 (481)
Q Consensus 322 ---~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---iL 389 (481)
.+.+.+... ..+++||||+++.+++.+++.|.+.+. ....+..+||.++. +|.++++.|++|+.+ ||
T Consensus 425 i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~il 503 (590)
T 3h1t_A 425 FAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVIL 503 (590)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEE
T ss_pred HHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEE
Confidence 122223332 457999999999999999999987542 11236778998764 799999999998765 88
Q ss_pred EEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCC--C-ccEEEEeec
Q 011605 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ--L-GRCFTLLHK 441 (481)
Q Consensus 390 v~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~--~-g~~~~~~~~ 441 (481)
|+|+++++|+|+|++++||++++++|+..|+||+||++|.+. . ..++++...
T Consensus 504 vtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 504 TTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp EESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred EECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 899999999999999999999999999999999999999875 3 444444444
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.5e-33 Score=277.82 Aligned_cols=268 Identities=17% Similarity=0.223 Sum_probs=187.5
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHH
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 147 (481)
.++++++.+|||+|||++|+++++..+... +.++||++||++|+.|+.+.+. +..+....+.....
T Consensus 20 ~~~~vlv~a~TGsGKT~~~~l~il~~~~~~---~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~----- 85 (459)
T 2z83_A 20 KRQMTVLDLHPGSGKTRKILPQIIKDAIQQ---RLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE----- 85 (459)
T ss_dssp TTCEEEECCCTTSCTTTTHHHHHHHHHHHT---TCCEEEEECSHHHHHHHHHHTT------TSCEEECC-----------
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEECchHHHHHHHHHHhc------CceEeEEecccccC-----
Confidence 478899999999999999999998877653 4589999999999999988876 33333222221100
Q ss_pred HhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHh-----hHHHHhhhHHHHH
Q 011605 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-----LREAYQAWLPTVL 222 (481)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l-----~~~~~~~~~~~l~ 222 (481)
...+..+.++|.+.+.+.+... ..++++++||+||||.+ ...++...
T Consensus 86 ---------------------~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~~~----- 137 (459)
T 2z83_A 86 ---------------------HQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYIAT----- 137 (459)
T ss_dssp -----------------------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHHHH-----
T ss_pred ---------------------CCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHHHH-----
Confidence 0123357778888776655442 45788999999999973 33322211
Q ss_pred HhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCcccc
Q 011605 223 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK 302 (481)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (481)
+... +..+++++|||++.....+... ..+...... .
T Consensus 138 -~~~~-------------------------------------~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~----~ 173 (459)
T 2z83_A 138 -KVEL-------------------------------------GEAAAIFMTATPPGTTDPFPDS--NAPIHDLQD----E 173 (459)
T ss_dssp -HHHT-------------------------------------TSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC----C
T ss_pred -Hhcc-------------------------------------CCccEEEEEcCCCcchhhhccC--CCCeEEecc----c
Confidence 1100 2448999999998665443322 222221110 0
Q ss_pred CcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHh
Q 011605 303 LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382 (481)
Q Consensus 303 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~ 382 (481)
.+. ...... ...+... .+++||||+++..++.+++.|+..+ ..+..+|+. +|..+++.|+
T Consensus 174 ~~~--------~~~~~~----~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g---~~v~~lh~~----~R~~~~~~f~ 233 (459)
T 2z83_A 174 IPD--------RAWSSG----YEWITEY-AGKTVWFVASVKMGNEIAMCLQRAG---KKVIQLNRK----SYDTEYPKCK 233 (459)
T ss_dssp CCS--------SCCSSC----CHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTT---CCEEEESTT----CCCCCGGGSS
T ss_pred CCc--------chhHHH----HHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcC---CcEEecCHH----HHHHHHhhcc
Confidence 000 000111 1223333 6899999999999999999999876 788889984 5778899999
Q ss_pred cCCceEEEEccccccCCCCCCCcEEEE--------------------cCCCCChhHHHHHhhhcccCCC-CccEEEEeec
Q 011605 383 EGKIQVLVSSDAMTRGMDVEGVNNVVN--------------------YDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLHK 441 (481)
Q Consensus 383 ~g~~~iLv~t~~l~~Gvdl~~~~~Vi~--------------------~~~~~s~~~~~Q~~GR~~R~~~-~g~~~~~~~~ 441 (481)
+|+.+|||||+++++|+|+|+ +.||+ ++.|.|..+|+||+||+||.|+ .|.+++++..
T Consensus 234 ~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~ 312 (459)
T 2z83_A 234 NGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGA 312 (459)
T ss_dssp SCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcc
Confidence 999999999999999999999 99998 6699999999999999999997 8999999877
Q ss_pred c
Q 011605 442 D 442 (481)
Q Consensus 442 ~ 442 (481)
.
T Consensus 313 ~ 313 (459)
T 2z83_A 313 T 313 (459)
T ss_dssp C
T ss_pred c
Confidence 5
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.3e-33 Score=281.03 Aligned_cols=280 Identities=18% Similarity=0.254 Sum_probs=197.7
Q ss_pred cchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCc
Q 011605 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 130 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 130 (481)
++.+|.++ ...+..++++++.+|||+|||.++.+++++ .+.+++|++||++|+.|+++.+.+.. +.
T Consensus 218 ~~~~q~~i----~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------~g~~vLVl~PTReLA~Qia~~l~~~~---g~ 283 (666)
T 3o8b_A 218 VFTDNSSP----PAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------QGYKVLVLNPSVAATLGFGAYMSKAH---GI 283 (666)
T ss_dssp SCCCCCSC----CCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHH---SC
T ss_pred cHHHHHHH----HHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------CCCeEEEEcchHHHHHHHHHHHHHHh---CC
Confidence 44555333 334445788999999999999988877664 24489999999999999988766543 55
Q ss_pred eEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhh
Q 011605 131 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210 (481)
Q Consensus 131 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~ 210 (481)
.+....|+.. ...+.+|+|+||+.|+ .. ..+.++++++||+||+|. .
T Consensus 284 ~vg~~vG~~~----------------------------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH~-l 330 (666)
T 3o8b_A 284 DPNIRTGVRT----------------------------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECHS-T 330 (666)
T ss_dssp CCEEECSSCE----------------------------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTTC-C
T ss_pred CeeEEECcEe----------------------------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccchh-c
Confidence 5566666543 1245799999999974 22 346678899999999985 4
Q ss_pred HHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccC
Q 011605 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 290 (481)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~ 290 (481)
+.++...+..+........ ....+++|||+...... ..
T Consensus 331 ~~~~~~~l~~Il~~l~~~~------------------------------------~~llil~SAT~~~~i~~------~~ 368 (666)
T 3o8b_A 331 DSTTILGIGTVLDQAETAG------------------------------------ARLVVLATATPPGSVTV------PH 368 (666)
T ss_dssp SHHHHHHHHHHHHHTTTTT------------------------------------CSEEEEEESSCTTCCCC------CC
T ss_pred CccHHHHHHHHHHhhhhcC------------------------------------CceEEEECCCCCccccc------CC
Confidence 6667777777776654321 11357779999764221 11
Q ss_pred CceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccC
Q 011605 291 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (481)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 370 (481)
+........ .......+. .... +.....+++||||++++.++.+++.|++.+ ..+..+||+++
T Consensus 369 p~i~~v~~~---~~~~i~~~~----~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g---~~v~~lHG~l~ 431 (666)
T 3o8b_A 369 PNIEEVALS---NTGEIPFYG----KAIP-------IEAIRGGRHLIFCHSKKKCDELAAKLSGLG---INAVAYYRGLD 431 (666)
T ss_dssp TTEEEEECB---SCSSEEETT----EEEC-------GGGSSSSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECTTSC
T ss_pred cceEEEeec---ccchhHHHH----hhhh-------hhhccCCcEEEEeCCHHHHHHHHHHHHhCC---CcEEEecCCCC
Confidence 111100000 000000000 0000 122357899999999999999999999876 88999999999
Q ss_pred hHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEE----------EcC-----------CCCChhHHHHHhhhcccC
Q 011605 371 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV----------NYD-----------KPAYIKTYIHRAGRTARA 429 (481)
Q Consensus 371 ~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi----------~~~-----------~~~s~~~~~Q~~GR~~R~ 429 (481)
..+ |.++..+|||||+++++|+|+| +++|| +|+ .|.+..+|+||+||+||
T Consensus 432 q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR- 502 (666)
T 3o8b_A 432 VSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR- 502 (666)
T ss_dssp GGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-
T ss_pred HHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-
Confidence 864 4556679999999999999997 99988 455 78899999999999999
Q ss_pred CCCccEEEEeecchHHH
Q 011605 430 GQLGRCFTLLHKDEVKR 446 (481)
Q Consensus 430 ~~~g~~~~~~~~~~~~~ 446 (481)
|+.|. +.++...+...
T Consensus 503 g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 503 GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp SSCEE-EEESCCCCBCS
T ss_pred CCCCE-EEEEecchhhc
Confidence 88899 88888765443
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=6.2e-33 Score=271.14 Aligned_cols=269 Identities=13% Similarity=0.139 Sum_probs=185.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 148 (481)
++++++++|||+|||++++++++..+... +.+++|++||++|+.|+.+.+. +..+....|.....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~---g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~~------ 66 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK---RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQSE------ 66 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC---CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcccc------
Confidence 67899999999999999988888655543 4589999999999999887665 44555554432110
Q ss_pred hhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccc
Q 011605 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228 (481)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~ 228 (481)
...+..+.+.|.+.+.+.+.. ...+.++++||+||+|.+ ...+......+......
T Consensus 67 --------------------~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~- 122 (431)
T 2v6i_A 67 --------------------RTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM- 122 (431)
T ss_dssp ----------------------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT-
T ss_pred --------------------CCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC-
Confidence 011235667787877665544 245788999999999987 43333333333333211
Q ss_pred cccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCccccc
Q 011605 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308 (481)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (481)
+..+++++|||+......+... ..+...... .
T Consensus 123 ------------------------------------~~~~~l~~SAT~~~~~~~~~~~--~~~i~~~~~--------~-- 154 (431)
T 2v6i_A 123 ------------------------------------GDAGAIFMTATPPGTTEAFPPS--NSPIIDEET--------R-- 154 (431)
T ss_dssp ------------------------------------TSCEEEEEESSCTTCCCSSCCC--SSCCEEEEC--------C--
T ss_pred ------------------------------------CCCcEEEEeCCCCcchhhhcCC--CCceeeccc--------c--
Confidence 2458999999998754333221 111110000 0
Q ss_pred ccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceE
Q 011605 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388 (481)
Q Consensus 309 ~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~i 388 (481)
+ . ..+...+...+.+. .+++||||+++++++.+++.|++.+ ..+..+||+ +|.++++.|++|+.+|
T Consensus 155 -~----~-~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~---~~v~~lhg~----~r~~~~~~f~~g~~~v 220 (431)
T 2v6i_A 155 -I----P-DKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAG---KKVLYLNRK----TFESEYPKCKSEKWDF 220 (431)
T ss_dssp -C----C-SSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTT---CCEEEESTT----THHHHTTHHHHSCCSE
T ss_pred -C----C-HHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcC---CeEEEeCCc----cHHHHHHhhcCCCCeE
Confidence 0 0 00011112233332 6789999999999999999999875 789999987 4788999999999999
Q ss_pred EEEccccccCCCCCCCcE-----------------EEEcCCCCChhHHHHHhhhcccCCCC-ccEEEEe
Q 011605 389 LVSSDAMTRGMDVEGVNN-----------------VVNYDKPAYIKTYIHRAGRTARAGQL-GRCFTLL 439 (481)
Q Consensus 389 Lv~t~~l~~Gvdl~~~~~-----------------Vi~~~~~~s~~~~~Q~~GR~~R~~~~-g~~~~~~ 439 (481)
||||+++++|+|+| +.. ||+++.|.+..+|+||+||+||.|.. |.++++.
T Consensus 221 LVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 221 VITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred EEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 99999999999999 554 56778889999999999999999865 4445554
No 53
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1e-32 Score=276.97 Aligned_cols=312 Identities=16% Similarity=0.209 Sum_probs=206.9
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
..|++||.+++..+......+.++++.++||+|||++++..+...... ....++|||||+ .|+.||.+++++++.
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~--~~~~~~LIv~P~-~l~~qw~~e~~~~~~-- 110 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE--NELTPSLVICPL-SVLKNWEEELSKFAP-- 110 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT--TCCSSEEEEECS-TTHHHHHHHHHHHCT--
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc--CCCCCEEEEccH-HHHHHHHHHHHHHCC--
Confidence 379999999987764322346789999999999999976655443322 234589999995 688999999999976
Q ss_pred CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
+..+....|.... .....++|+|+||+.+.+... +....+++||+||||+
T Consensus 111 ~~~v~~~~g~~~~--------------------------~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~ 160 (500)
T 1z63_A 111 HLRFAVFHEDRSK--------------------------IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQN 160 (500)
T ss_dssp TSCEEECSSSTTS--------------------------CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGG
T ss_pred CceEEEEecCchh--------------------------ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccc
Confidence 4556666665421 011345899999999865432 2234689999999999
Q ss_pred hhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhc---
Q 011605 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ--- 285 (481)
Q Consensus 209 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~--- 285 (481)
+.+.. ......+..+ +....+++|||+..+......
T Consensus 161 ~kn~~--~~~~~~l~~l---------------------------------------~~~~~l~LTaTP~~n~~~el~~ll 199 (500)
T 1z63_A 161 IKNPQ--TKIFKAVKEL---------------------------------------KSKYRIALTGTPIENKVDDLWSIM 199 (500)
T ss_dssp GSCTT--SHHHHHHHTS---------------------------------------CEEEEEEECSSCSTTCHHHHHHHH
T ss_pred cCCHh--HHHHHHHHhh---------------------------------------ccCcEEEEecCCCCCCHHHHHHHH
Confidence 75432 1111111111 112457788887543111000
Q ss_pred ---------------------------------ccccCCceeecCCcc----ccCcccc-------------cccc----
Q 011605 286 ---------------------------------LDLHHPLFLTTGETR----YKLPERL-------------ESYK---- 311 (481)
Q Consensus 286 ---------------------------------~~~~~~~~~~~~~~~----~~~~~~~-------------~~~~---- 311 (481)
..+..+......... ..++... ..|.
T Consensus 200 ~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~ 279 (500)
T 1z63_A 200 TFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVE 279 (500)
T ss_dssp HHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHH
T ss_pred HHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHH
Confidence 000011111000000 0000000 0000
Q ss_pred ---------------------------------------cccCCCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHH
Q 011605 312 ---------------------------------------LICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCT 350 (481)
Q Consensus 312 ---------------------------------------~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~ 350 (481)
.......|...+.+++... .++++||||++...++.+++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~ 359 (500)
T 1z63_A 280 NLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRN 359 (500)
T ss_dssp HHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHH
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHH
Confidence 0112244666666666554 57899999999999999999
Q ss_pred HHhhc-cccceeEEEcccccChHHHHHHHHHHhcC-Cce-EEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcc
Q 011605 351 LLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (481)
Q Consensus 351 ~L~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~ 427 (481)
.|... + ..+..+||+++..+|.++++.|++| +.+ +|++|.++++|+|+|++++||++++|+++..+.|++||++
T Consensus 360 ~l~~~~~---~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~ 436 (500)
T 1z63_A 360 IIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVY 436 (500)
T ss_dssp HHHHHHT---CCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTT
T ss_pred HHHHhhC---CCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHH
Confidence 99874 5 6788999999999999999999988 555 7899999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEe
Q 011605 428 RAGQLGRCFTLL 439 (481)
Q Consensus 428 R~~~~g~~~~~~ 439 (481)
|.|+.+.++++.
T Consensus 437 R~Gq~~~v~v~~ 448 (500)
T 1z63_A 437 RIGQTRNVIVHK 448 (500)
T ss_dssp TTTTTSCEEEEE
T ss_pred HcCCCCeeEEEE
Confidence 999987765543
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.98 E-value=2.7e-31 Score=269.47 Aligned_cols=283 Identities=16% Similarity=0.169 Sum_probs=198.0
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHH
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 147 (481)
.+++++++||||+|||..+ +..+... .+.+|++|+++|+.|+++.+++. |+.+..++|+......
T Consensus 154 ~rk~vlv~apTGSGKT~~a----l~~l~~~----~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~--- 218 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHA----IQKYFSA----KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ--- 218 (677)
T ss_dssp CCEEEEEECCTTSSHHHHH----HHHHHHS----SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS---
T ss_pred CCCEEEEEcCCCCCHHHHH----HHHHHhc----CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec---
Confidence 4788999999999999843 3333333 24699999999999999998876 7888888888654100
Q ss_pred HhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhccc
Q 011605 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (481)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~ 227 (481)
. -....+++++|++.+. ....++++|+||+|.+.+.+++..+..++.....
T Consensus 219 ---T-----------------pGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~ 269 (677)
T 3rc3_A 219 ---P-----------------NGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA 269 (677)
T ss_dssp ---T-----------------TCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE
T ss_pred ---C-----------------CCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCc
Confidence 0 0123578888876531 2456799999999999887787777766665532
Q ss_pred ccccccccccccccccccchhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccc
Q 011605 228 DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307 (481)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (481)
...+++++|||... ....... ......+...... .+...
T Consensus 270 -------------------------------------~~i~il~~SAT~~~-i~~l~~~-~~~~~~v~~~~r~--~~l~~ 308 (677)
T 3rc3_A 270 -------------------------------------EEVHLCGEPAAIDL-VMELMYT-TGEEVEVRDYKRL--TPISV 308 (677)
T ss_dssp -------------------------------------EEEEEEECGGGHHH-HHHHHHH-HTCCEEEEECCCS--SCEEE
T ss_pred -------------------------------------cceEEEeccchHHH-HHHHHHh-cCCceEEEEeeec--chHHH
Confidence 24578888998531 2211111 1112111111000 00000
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhc--CC
Q 011605 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GK 385 (481)
Q Consensus 308 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~ 385 (481)
..... ..+... ..+.+|||++.++++.+++.|.+.+ ..+..+||+|+..+|..+++.|++ |.
T Consensus 309 -----~~~~l-------~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g---~~v~~lHG~L~~~~R~~~~~~F~~~~g~ 372 (677)
T 3rc3_A 309 -----LDHAL-------ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRG---LESAVIYGSLPPGTKLAQAKKFNDPNDP 372 (677)
T ss_dssp -----CSSCC-------CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHCTTSS
T ss_pred -----HHHHH-------HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcC---CCeeeeeccCCHHHHHHHHHHHHccCCC
Confidence 00000 011122 2345888999999999999999876 789999999999999999999998 88
Q ss_pred ceEEEEccccccCCCCCCCcEEEEcCC--------------CCChhHHHHHhhhcccCCCC---ccEEEEeecchHHHHH
Q 011605 386 IQVLVSSDAMTRGMDVEGVNNVVNYDK--------------PAYIKTYIHRAGRTARAGQL---GRCFTLLHKDEVKRFK 448 (481)
Q Consensus 386 ~~iLv~t~~l~~Gvdl~~~~~Vi~~~~--------------~~s~~~~~Q~~GR~~R~~~~---g~~~~~~~~~~~~~~~ 448 (481)
.+|||||+++++|+|+ +++.||+++. |.+..+|.||+||+||.|.. |.|+.+ ...+.+.+.
T Consensus 373 ~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l-~~~d~~~~~ 450 (677)
T 3rc3_A 373 CKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM-NHEDLSLLK 450 (677)
T ss_dssp CCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEES-STTHHHHHH
T ss_pred eEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEE-ecchHHHHH
Confidence 9999999999999999 8999999998 77899999999999999965 555554 344555565
Q ss_pred HHHHH
Q 011605 449 KLLQK 453 (481)
Q Consensus 449 ~~~~~ 453 (481)
+++..
T Consensus 451 ~~~~~ 455 (677)
T 3rc3_A 451 EILKR 455 (677)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 55544
No 55
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-30 Score=274.50 Aligned_cols=381 Identities=19% Similarity=0.162 Sum_probs=224.3
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
..+++||.+++..++.....+.++++.++||+|||++++..+...+... ....++||||| ..|+.||.+++.++++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-~~~~~~LIV~P-~sll~qW~~E~~~~~p-- 310 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-RQNGPHIIVVP-LSTMPAWLDTFEKWAP-- 310 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-SCCSCEEEECC-TTTHHHHHHHHHHHST--
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-CCCCCEEEEEC-chHHHHHHHHHHHHCC--
Confidence 3799999999987764444588999999999999999877665554443 33457999999 5788999999999986
Q ss_pred CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
++.+....|..........+.-... ..........++|+|+|++.+...... +....+++||+||||+
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~---------~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~ 378 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTN---------PRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHR 378 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSC---------C-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHhhcc---------ccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhh
Confidence 5677778887665544332221000 000011223578999999999775433 2233588999999998
Q ss_pred hhHHHHhhhHHHHHHhcccccccccccccccccccccc----hh----------------------------------h-
Q 011605 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGS----LK----------------------------------T- 249 (481)
Q Consensus 209 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------------------------------~- 249 (481)
+-+.. ......+..+... ......++.+...... .. +
T Consensus 379 lkn~~--s~~~~~l~~l~~~--~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~ 454 (800)
T 3mwy_W 379 LKNAE--SSLYESLNSFKVA--NRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPF 454 (800)
T ss_dssp GCCSS--SHHHHHHTTSEEE--EEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGG
T ss_pred hcCch--hHHHHHHHHhhhc--cEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHH
Confidence 73321 1111111111100 0000000000000000 00 0
Q ss_pred hhccccccccCCCCCcceeeeeeceeeccCchhhhcccc-----------------------------cCCceeecCCcc
Q 011605 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL-----------------------------HHPLFLTTGETR 300 (481)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~ 300 (481)
+.+..........+......+.+.-|... .......+ .+|..+......
T Consensus 455 ~lRR~k~dv~~~LP~k~~~~v~v~ls~~q--~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~ 532 (800)
T 3mwy_W 455 ILRRLKKDVEKSLPSKTERILRVELSDVQ--TEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEER 532 (800)
T ss_dssp EEECCGGGGTTTSCCEEEEEEEECCCHHH--HHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHH
T ss_pred HhhhhHHhhhhccCCcEEEEEEeCCCHHH--HHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHH
Confidence 00000000000011111111111111110 00000000 000000000000
Q ss_pred c------cCcccccccccccCCCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChH
Q 011605 301 Y------KLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 372 (481)
Q Consensus 301 ~------~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 372 (481)
. .................|...+..++... .++++||||+....+..+...|...+ +.+..+||+++..
T Consensus 533 ~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g---~~~~~i~G~~~~~ 609 (800)
T 3mwy_W 533 VLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKG---INFQRLDGTVPSA 609 (800)
T ss_dssp HCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHT---CCCEEESTTSCHH
T ss_pred HHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCC---CCEEEEeCCCCHH
Confidence 0 00000000001112355777777777765 46799999999999999999998876 8899999999999
Q ss_pred HHHHHHHHHhcCCc---eEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEE--eecch--HH
Q 011605 373 VRSKTLKAFREGKI---QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL--LHKDE--VK 445 (481)
Q Consensus 373 ~r~~~~~~f~~g~~---~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~--~~~~~--~~ 445 (481)
+|.++++.|+++.. .+|++|.++++|+|++.+++||++++++|+..+.|++||++|.|+...|.+| +..+. ..
T Consensus 610 eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~ 689 (800)
T 3mwy_W 610 QRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEE 689 (800)
T ss_dssp HHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHH
T ss_pred HHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHH
Confidence 99999999998654 5899999999999999999999999999999999999999999988655554 55442 23
Q ss_pred HHHHHHHHh
Q 011605 446 RFKKLLQKA 454 (481)
Q Consensus 446 ~~~~~~~~~ 454 (481)
.+....+++
T Consensus 690 i~~~~~~K~ 698 (800)
T 3mwy_W 690 VLERARKKM 698 (800)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444444433
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=6e-30 Score=262.23 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=105.9
Q ss_pred CchHHHHHHHHHh---cCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCc---eEEE
Q 011605 317 KLKPLYLVALLQS---LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI---QVLV 390 (481)
Q Consensus 317 ~~k~~~l~~~l~~---~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~iLv 390 (481)
..|...+..++.. ..++++||||++...++.+.+.|...+ +.+..+||+++..+|.++++.|++|.. .+|+
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~ 474 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR---YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFML 474 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHT---CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCC---CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Confidence 3455555555543 357899999999999999999998877 788999999999999999999998865 4889
Q ss_pred EccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEE--eecc
Q 011605 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL--LHKD 442 (481)
Q Consensus 391 ~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~--~~~~ 442 (481)
+|.+.++|+|++++++||+++++|++..+.|++||++|.|+...|++| +..+
T Consensus 475 st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 475 SSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp EGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred ecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 999999999999999999999999999999999999999988665554 4444
No 57
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=3.5e-30 Score=232.72 Aligned_cols=212 Identities=28% Similarity=0.426 Sum_probs=180.3
Q ss_pred cCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 011605 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~ 95 (481)
..|.+..+|++.. |++.+.+.+.++||..|+++|.++++.++. ++++++.+|||+|||++|+++++..+.
T Consensus 23 ~~p~~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~ 92 (242)
T 3fe2_A 23 NCPKPVLNFYEAN------FPANVMDVIARQNFTEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHIN 92 (242)
T ss_dssp CCCCCCSSTTTTT------CCHHHHHHHHTTTCCSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHH
Confidence 4567778888885 999999999999999999999999999886 889999999999999999999998887
Q ss_pred Hhc----cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcC
Q 011605 96 NRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (481)
Q Consensus 96 ~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (481)
... ..++++||++||++|+.|+.+.+++++...++.+..+.|+......... +..
T Consensus 93 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~ 151 (242)
T 3fe2_A 93 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD---------------------LER 151 (242)
T ss_dssp TSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH---------------------HHH
T ss_pred hccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---------------------hcC
Confidence 532 3467899999999999999999999988889999999998876655433 234
Q ss_pred CCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhh
Q 011605 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (481)
Q Consensus 172 ~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
+++|+|+||+++.+.+... ...+++++++|+||||++.+++|...+..++..+.
T Consensus 152 ~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~------------------------- 205 (242)
T 3fe2_A 152 GVEICIATPGRLIDFLECG-KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR------------------------- 205 (242)
T ss_dssp CCSEEEECHHHHHHHHHHT-SCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSC-------------------------
T ss_pred CCCEEEECHHHHHHHHHcC-CCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCC-------------------------
Confidence 6799999999999988763 35688999999999999999888888888877653
Q ss_pred ccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecC
Q 011605 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (481)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~ 297 (481)
+..+.+++|||++.....+...++.++..+...
T Consensus 206 -------------~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 206 -------------PDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp -------------SSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred -------------ccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 234899999999988888888888888766554
No 58
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=3.2e-29 Score=226.86 Aligned_cols=205 Identities=32% Similarity=0.504 Sum_probs=173.3
Q ss_pred CCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccC
Q 011605 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~ 100 (481)
..+|+++. |++.+.++++.+||..|+++|.++++.++. ++++++.+|||+|||++++++++..+... ..
T Consensus 42 ~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~-~~ 110 (249)
T 3ber_A 42 TKTFKDLG------VTDVLCEACDQLGWTKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLET-PQ 110 (249)
T ss_dssp HCCTGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHS-CC
T ss_pred cCCHHHcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcC-CC
Confidence 45566664 999999999999999999999999999886 79999999999999999999999888765 34
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCc
Q 011605 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~ 180 (481)
+.++||++|+++|+.|+.+.+++++...++.+..+.|+......... +..+++|+|+||
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~I~v~Tp 169 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA---------------------LAKKPHIIIATP 169 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHH---------------------HHTCCSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHH---------------------hcCCCCEEEECH
Confidence 56899999999999999999999988888999999988765444322 235679999999
Q ss_pred hHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccC
Q 011605 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
+++.+.+.......+..++++|+||||++.+.++...+..++..+.
T Consensus 170 ~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~---------------------------------- 215 (249)
T 3ber_A 170 GRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP---------------------------------- 215 (249)
T ss_dssp HHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSC----------------------------------
T ss_pred HHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCC----------------------------------
Confidence 9999988765556788999999999999998888888888876553
Q ss_pred CCCCcceeeeeeceeeccCchhhhcccccCCceee
Q 011605 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (481)
Q Consensus 261 ~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~ 295 (481)
+..+.+++|||++.....+...++.+|..+.
T Consensus 216 ----~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~ 246 (249)
T 3ber_A 216 ----RDRKTFLFSATMTKKVQKLQRAALKNPVKCA 246 (249)
T ss_dssp ----SSSEEEEEESSCCHHHHHHHHHHCSSCEEEE
T ss_pred ----CCCeEEEEeccCCHHHHHHHHHHCCCCEEEE
Confidence 2347899999999888888888888887653
No 59
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=6.2e-29 Score=223.89 Aligned_cols=207 Identities=29% Similarity=0.479 Sum_probs=171.5
Q ss_pred CCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc
Q 011605 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (481)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~ 98 (481)
....+|++.+ +++.+.+.++++||..|+++|.++++.++. ++++++.+|||+|||++++++++..+....
T Consensus 22 ~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~ 91 (236)
T 2pl3_A 22 NEITRFSDFP------LSKKTLKGLQEAQYRLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQ 91 (236)
T ss_dssp GGCSBGGGSC------CCHHHHHHHHHTTCCBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTT
T ss_pred cccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhc
Confidence 4456688875 999999999999999999999999999886 889999999999999999999998876521
Q ss_pred ---cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcE
Q 011605 99 ---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175 (481)
Q Consensus 99 ---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 175 (481)
..+.+++|++|+++|+.|+.+.+++++...++.+..+.|+.......... .+++|
T Consensus 92 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------------~~~~i 149 (236)
T 2pl3_A 92 WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI----------------------NNINI 149 (236)
T ss_dssp CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH----------------------TTCSE
T ss_pred ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC----------------------CCCCE
Confidence 24568999999999999999999999887788898888887655442221 45799
Q ss_pred EEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccc
Q 011605 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (481)
Q Consensus 176 li~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (481)
+|+||+.+.+.+.......+.+++++|+||||++.++++...+..++..+..
T Consensus 150 iv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~---------------------------- 201 (236)
T 2pl3_A 150 LVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK---------------------------- 201 (236)
T ss_dssp EEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCT----------------------------
T ss_pred EEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCC----------------------------
Confidence 9999999999887654566788999999999999988888888877766532
Q ss_pred ccccCCCCCcceeeeeeceeeccCchhhhcccccCCceee
Q 011605 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (481)
Q Consensus 256 ~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~ 295 (481)
..+.+++|||++..........+.+|..+.
T Consensus 202 ----------~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~ 231 (236)
T 2pl3_A 202 ----------KRQTLLFSATQTKSVKDLARLSLKNPEYVW 231 (236)
T ss_dssp ----------TSEEEEEESSCCHHHHHHHHHSCSSCEEEE
T ss_pred ----------CCeEEEEEeeCCHHHHHHHHHhCCCCEEEE
Confidence 337899999999888888888888876654
No 60
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.96 E-value=8.9e-29 Score=261.35 Aligned_cols=347 Identities=16% Similarity=0.140 Sum_probs=215.8
Q ss_pred HHHHHHHHHCC-------CCccchhhHHhHHhhhCCCC----------CCCCEEEECCCCchhHHHhHHHHHHHHHHhcc
Q 011605 37 PRLKVALQNMG-------ISSLFPVQVAVWQETIGPGL----------FERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (481)
Q Consensus 37 ~~l~~~~~~~~-------~~~~~~~Q~~~~~~~~~~~~----------~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~ 99 (481)
+.+++.+..+- -..||++|.+|++.++..+. .+++++++++||||||+++ ++++..+.. ..
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-~~ 328 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-LD 328 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-CT
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-cC
Confidence 55666666542 23599999999999876321 1367999999999999997 445544432 22
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhh-cCCCcEEEe
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ili~ 178 (481)
...++|||+|+++|+.|+.+.+..++.. .+.+..+.... ...+ ..+++|+|+
T Consensus 329 ~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l---------------------~~~L~~~~~~IiVt 381 (1038)
T 2w00_A 329 FIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGL---------------------KRNLDKDDNKIIVT 381 (1038)
T ss_dssp TCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHH---------------------HHHHHCSSCCEEEE
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHH---------------------HHHhcCCCCCEEEE
Confidence 3458999999999999999999987542 11222222111 1112 245799999
Q ss_pred CchHHHHHHhcCCC-cccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccccc
Q 011605 179 TPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (481)
Q Consensus 179 T~~~l~~~l~~~~~-~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (481)
|++++...+..... ..++.+.+||+||||++....+ ...+...+
T Consensus 382 Tiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~---~~~I~~~~-------------------------------- 426 (1038)
T 2w00_A 382 TIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEA---QKNLKKKF-------------------------------- 426 (1038)
T ss_dssp EHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHH---HHHHHHHC--------------------------------
T ss_pred EHHHHHHHHhcccchhccccccEEEEEccchhcchHH---HHHHHHhC--------------------------------
Confidence 99999987765321 2356788999999999764332 33333332
Q ss_pred ccCCCCCcceeeeeeceeeccCch--------hhhcc-------------cccCCceeecCCccccC-----c---cc--
Q 011605 258 GFKDKPYPRLVKMVLSATLTQDPN--------KLAQL-------------DLHHPLFLTTGETRYKL-----P---ER-- 306 (481)
Q Consensus 258 ~~~~~~~~~~~~v~~sat~~~~~~--------~~~~~-------------~~~~~~~~~~~~~~~~~-----~---~~-- 306 (481)
+..+.+++|||+..... ..... +...+..+......... . ..
T Consensus 427 -------p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~ 499 (1038)
T 2w00_A 427 -------KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLS 499 (1038)
T ss_dssp -------SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHH
T ss_pred -------CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHH
Confidence 23468899999875321 11100 00111111000000000 0 00
Q ss_pred -ccccccccCCCchHHHH-HHHHHhc-----------CCCeEEEEecchhhHHHHHHHHhhccc---------cceeE-E
Q 011605 307 -LESYKLICESKLKPLYL-VALLQSL-----------GEEKCIVFTSSVESTHRLCTLLNHFGE---------LRIKI-K 363 (481)
Q Consensus 307 -~~~~~~~~~~~~k~~~l-~~~l~~~-----------~~~~~lVf~~s~~~~~~l~~~L~~~~~---------~~~~~-~ 363 (481)
....... ....+...+ ..++... .+.++||||+++.+|..+++.|.+.+. .+..+ .
T Consensus 500 ~i~~~~~l-~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~av 578 (1038)
T 2w00_A 500 AAENQQAF-LHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIAT 578 (1038)
T ss_dssp HTCSTTTT-TCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEE
T ss_pred HHHHHHHh-cCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEE
Confidence 0000011 111122222 2232221 235899999999999999999987641 11333 3
Q ss_pred Ecccc----------c----------Ch-----------------------------HHHHHHHHHHhcCCceEEEEccc
Q 011605 364 EYSGL----------Q----------RQ-----------------------------SVRSKTLKAFREGKIQVLVSSDA 394 (481)
Q Consensus 364 ~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~iLv~t~~ 394 (481)
.+|+. + +. .+|..++++|++|+.+|||+|++
T Consensus 579 v~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ 658 (1038)
T 2w00_A 579 IFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGM 658 (1038)
T ss_dssp ECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESST
T ss_pred EEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcch
Confidence 45542 2 11 14788999999999999999999
Q ss_pred cccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCC--ccEEEEeecchHHHHHHHHHHhcC
Q 011605 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLLQKADN 456 (481)
Q Consensus 395 l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~~~~~~~ 456 (481)
+.+|+|+|.+ .++.++.|.+...|+|++||++|.+.. ..++++...+..+.+.+-+..+..
T Consensus 659 lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~~~l~~Al~~y~~ 721 (1038)
T 2w00_A 659 FLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAITLFGD 721 (1038)
T ss_dssp TSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCHHHHHHHHHHTSC
T ss_pred HHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccccHHHHHHHHHHHhC
Confidence 9999999999 677889999999999999999998753 345555555555655555555543
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.96 E-value=4.1e-29 Score=223.88 Aligned_cols=208 Identities=22% Similarity=0.315 Sum_probs=167.2
Q ss_pred cCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 011605 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~ 95 (481)
..|....+|+++. |++.+.+.++++||..|+++|.++++.++. ++++++.+|||+|||++++++++..+.
T Consensus 18 ~~~~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~ 87 (230)
T 2oxc_A 18 VLLAEPADFESLL------LSRPVLEGLRAAGFERPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLV 87 (230)
T ss_dssp ------CCGGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4455566788885 999999999999999999999999999876 889999999999999999999988775
Q ss_pred HhccCCccEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCc
Q 011605 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174 (481)
Q Consensus 96 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (481)
.. ..+.++||++|+++|+.|+.+.+++++... ++.+..+.|+......... ..+++
T Consensus 88 ~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~ 144 (230)
T 2oxc_A 88 LE-NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR----------------------LKKCH 144 (230)
T ss_dssp TT-SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH----------------------TTSCS
T ss_pred hc-CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh----------------------ccCCC
Confidence 54 245689999999999999999999997655 7888888888765544222 13579
Q ss_pred EEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHH-HhhhHHHHHHhcccccccccccccccccccccchhhhhcc
Q 011605 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253 (481)
Q Consensus 175 Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (481)
|+|+||+.+.+.+.. ....+.+++++|+||||++.+++ +...+..++..+..
T Consensus 145 Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~-------------------------- 197 (230)
T 2oxc_A 145 IAVGSPGRIKQLIEL-DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA-------------------------- 197 (230)
T ss_dssp EEEECHHHHHHHHHT-TSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS--------------------------
T ss_pred EEEECHHHHHHHHhc-CCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC--------------------------
Confidence 999999999998876 33567889999999999998886 88888877766531
Q ss_pred ccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceee
Q 011605 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (481)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~ 295 (481)
..+++++|||++.....+...++.+|..+.
T Consensus 198 ------------~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 198 ------------SKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp ------------SCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred ------------CCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 337899999998887777777777776543
No 62
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=6.1e-29 Score=219.18 Aligned_cols=202 Identities=27% Similarity=0.468 Sum_probs=167.8
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCC
Q 011605 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (481)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~ 101 (481)
.+|++++ |++++.+.+.++||..|+++|.++++.++. ++++++.+|||+|||++++++++..+... ..+
T Consensus 3 ~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~~~ 71 (206)
T 1vec_A 3 NEFEDYC------LKRELLMGIFEMGWEKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLK-KDN 71 (206)
T ss_dssp SSGGGSC------CCHHHHHHHHTTTCCSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTT-SCS
T ss_pred CChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhccc-CCC
Confidence 4577775 999999999999999999999999999886 78999999999999999999988876553 345
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCc
Q 011605 102 LRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~ 180 (481)
.+++|++|+++|+.|+.+.+.+++... +..+....|+......... +..+++|+|+||
T Consensus 72 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~i~v~T~ 130 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---------------------LDDTVHVVIATP 130 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---------------------TTSCCSEEEECH
T ss_pred eeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---------------------cCCCCCEEEeCH
Confidence 689999999999999999999998776 7888888888776544322 235679999999
Q ss_pred hHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccC
Q 011605 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
+.+.+.+... ...+.+++++|+||||++.+.++...+..+.....
T Consensus 131 ~~l~~~~~~~-~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~---------------------------------- 175 (206)
T 1vec_A 131 GRILDLIKKG-VAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP---------------------------------- 175 (206)
T ss_dssp HHHHHHHHTT-CSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSC----------------------------------
T ss_pred HHHHHHHHcC-CcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCC----------------------------------
Confidence 9999888763 35678899999999999988888888887776653
Q ss_pred CCCCcceeeeeeceeeccCchhhhcccccCCcee
Q 011605 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294 (481)
Q Consensus 261 ~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~ 294 (481)
+..+.+++|||++.........++.+|..+
T Consensus 176 ----~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 176 ----KNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp ----TTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ----ccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 134789999999988888888777776543
No 63
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.96 E-value=9.5e-28 Score=236.69 Aligned_cols=385 Identities=18% Similarity=0.182 Sum_probs=238.6
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|. .|++.|.-..-.+. ++-+..+.||.|||+++.+|++-.... +..+.|++|+..||.|-++++..+.
T Consensus 72 lg~-r~~dvQligg~~L~------~G~iaEM~TGEGKTLva~lp~~lnAL~----G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALH------EGKVAEMKTGEGKTLAATMPIYLNALI----GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp TSC-CCCHHHHHHHHHHH------TTCEEECCTTSCHHHHTHHHHHHHHTT----SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHh------CCChhhccCCCCccHHHHHHHHHHHhc----CCceEEEeccHHHHHhHHHHHHHHH
Confidence 676 78899977655433 334999999999999999987644444 3479999999999999999999999
Q ss_pred cccCceEEEeccCcc-----------hHHHHHHHhh-ccccccC----------------c-cCChhhHHHhhcCCCcEE
Q 011605 126 PAVGLSVGLAVGQSS-----------IADEISELIK-RPKLEAG----------------I-CYDPEDVLQELQSAVDIL 176 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~-----------~~~~~~~~~~-~~~~~~~----------------~-~~~~~~~~~~~~~~~~Il 176 (481)
..+|++++++..... ..+....-++ -|.-... . ...+.. +...-.|+|+
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY~~DIt 218 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAYLCDVT 218 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHHHSSEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHhcCCCE
Confidence 999999999887310 0000000000 0000000 0 000111 1111246999
Q ss_pred EeCchHH-HHHHhcC-----CCcccCCccEEEEechhHhhHHH----------------HhhhHHHHHHhcccc------
Q 011605 177 VATPGRL-MDHINAT-----RGFTLEHLCYLVVDETDRLLREA----------------YQAWLPTVLQLTRSD------ 228 (481)
Q Consensus 177 i~T~~~l-~~~l~~~-----~~~~~~~~~~iVvDE~H~l~~~~----------------~~~~~~~l~~~~~~~------ 228 (481)
.+|..-+ .+.|... .......+.+.||||++.++=+. ....+..+...+...
T Consensus 219 YgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 298 (822)
T 3jux_A 219 YGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVD 298 (822)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEEC
T ss_pred EccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 9998776 3444332 12235678999999999743210 000111111110000
Q ss_pred ---------------------cccccc-------------------------------------cccccc-c--cccc--
Q 011605 229 ---------------------NENRFS-------------------------------------DASTFL-P--SAFG-- 245 (481)
Q Consensus 229 ---------------------~~~~~~-------------------------------------~~~~~~-~--~~~~-- 245 (481)
..+.+. ...... + .|-.
T Consensus 299 ek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 378 (822)
T 3jux_A 299 EKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGL 378 (822)
T ss_dssp CSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGH
T ss_pred cccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHH
Confidence 000000 000000 0 0000
Q ss_pred -----c---------hhhhhccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCCccccCcccccccc
Q 011605 246 -----S---------LKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYK 311 (481)
Q Consensus 246 -----~---------~~~~~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (481)
. ..+.-.-.++..+.... ++..||+|.......+...+..+...++.. .+.. .......
T Consensus 379 HQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~----kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn--kp~~-R~d~~d~ 451 (822)
T 3jux_A 379 HQAIEAKEGVPIKEESITYATITFQNYFRMYE----KLAGMTGTAKTEESEFVQVYGMEVVVIPTH--KPMI-RKDHDDL 451 (822)
T ss_dssp HHHHHHHHSSCCCCCCCEEEEECHHHHHTTSS----EEEEEESSCGGGHHHHHHHSCCCEEECCCS--SCCC-CEECCCE
T ss_pred HHHHHHHcCCCCCCCcchhHHHHHHHHHHHhh----HHeEECCCCchHHHHHHHHhCCeEEEECCC--CCcc-eeecCcE
Confidence 0 00011111222222222 478999999766555555443332222221 1111 1111112
Q ss_pred cccCCCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEE
Q 011605 312 LICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389 (481)
Q Consensus 312 ~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iL 389 (481)
.......|...+...+... .+.++||||+|+..++.+++.|++.+ +.+..+||+....++..+..+++.| .|+
T Consensus 452 vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~G---i~~~vLhgkq~~rE~~ii~~ag~~g--~Vt 526 (822)
T 3jux_A 452 VFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKG---IPHQVLNAKYHEKEAEIVAKAGQKG--MVT 526 (822)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTT---CCCEEECSCHHHHHHHHHHHHHSTT--CEE
T ss_pred EEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEeeCCchHHHHHHHHhCCCCC--eEE
Confidence 3344456777777766543 46799999999999999999999877 8889999997776666666667666 699
Q ss_pred EEccccccCCCCC--------CCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecch-------HHHHHHHHHHh
Q 011605 390 VSSDAMTRGMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE-------VKRFKKLLQKA 454 (481)
Q Consensus 390 v~t~~l~~Gvdl~--------~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~-------~~~~~~~~~~~ 454 (481)
|||+++++|+|++ +..+||+++.|.|...|.|++||+||.|.+|.+++|++..| .+++.++++.+
T Consensus 527 VATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~ 606 (822)
T 3jux_A 527 IATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNIL 606 (822)
T ss_dssp EEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHS
T ss_pred EEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHc
Confidence 9999999999998 66799999999999999999999999999999999999876 35777777777
Q ss_pred c
Q 011605 455 D 455 (481)
Q Consensus 455 ~ 455 (481)
.
T Consensus 607 ~ 607 (822)
T 3jux_A 607 K 607 (822)
T ss_dssp S
T ss_pred C
Confidence 4
No 64
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.96 E-value=5.1e-29 Score=227.31 Aligned_cols=206 Identities=32% Similarity=0.508 Sum_probs=169.9
Q ss_pred cccCCCCCCC-CCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc---
Q 011605 23 LFEDCPLDHL-PCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--- 98 (481)
Q Consensus 23 ~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~--- 98 (481)
.|++..|.++ ..+++.+.+.+.++||..|+++|.++++.++. ++++++++|||+|||++|+++++..+....
T Consensus 48 ~~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~ 123 (262)
T 3ly5_A 48 AFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMP 123 (262)
T ss_dssp BSGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCG
T ss_pred ccccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccc
Confidence 4555555555 24899999999999999999999999999886 789999999999999999999998887632
Q ss_pred cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEe
Q 011605 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (481)
Q Consensus 99 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~ 178 (481)
..+.+++|++||++|+.|+.+.+++++...+..+..+.|+......... +..+++|+|+
T Consensus 124 ~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~Iiv~ 182 (262)
T 3ly5_A 124 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---------------------LGNGINIIVA 182 (262)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---------------------HHHCCSEEEE
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---------------------hcCCCCEEEE
Confidence 2456899999999999999999999998888888888888776554332 2345799999
Q ss_pred CchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccc
Q 011605 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (481)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (481)
||+++...+.......+++++++|+||||++.++++...+..++..+..
T Consensus 183 Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~------------------------------- 231 (262)
T 3ly5_A 183 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT------------------------------- 231 (262)
T ss_dssp CHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCS-------------------------------
T ss_pred cHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCC-------------------------------
Confidence 9999999887766567889999999999999999999888888877632
Q ss_pred cCCCCCcceeeeeeceeeccCchhhhcccccCC
Q 011605 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291 (481)
Q Consensus 259 ~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~ 291 (481)
..+++++|||++.....+....+..+
T Consensus 232 -------~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 232 -------RRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp -------SSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred -------CCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 34789999999988888887776544
No 65
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.96 E-value=4e-29 Score=224.95 Aligned_cols=210 Identities=25% Similarity=0.391 Sum_probs=165.5
Q ss_pred cCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 011605 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~ 95 (481)
..|....+|+++. |++.+.+.+.++||..|+++|.++++.++. ++++++.+|||+|||++++++++..+.
T Consensus 24 ~~~~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~ 93 (237)
T 3bor_A 24 NWNEIVDNFDDMN------LKESLLRGIYAYGFEKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLE 93 (237)
T ss_dssp ---CCCCSGGGSC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCC
T ss_pred CCCCccCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4455667788885 999999999999999999999999999886 789999999999999999999988775
Q ss_pred HhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcE
Q 011605 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175 (481)
Q Consensus 96 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 175 (481)
.. ..+.++||++|+++|+.|+.+.+++++...+..+....|+.........+ ....++|
T Consensus 94 ~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l--------------------~~~~~~I 152 (237)
T 3bor_A 94 IE-FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKL--------------------QAEAPHI 152 (237)
T ss_dssp TT-SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC---------------------------------CCCSE
T ss_pred hc-CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHH--------------------hcCCCCE
Confidence 43 24568999999999999999999999887788888888876544332211 1123799
Q ss_pred EEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccc
Q 011605 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (481)
Q Consensus 176 li~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (481)
+|+||+.+.+.+... ...+..++++|+||||++.++++...+..++....
T Consensus 153 lv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~----------------------------- 202 (237)
T 3bor_A 153 VVGTPGRVFDMLNRR-YLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLN----------------------------- 202 (237)
T ss_dssp EEECHHHHHHHHHTT-SSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSC-----------------------------
T ss_pred EEECHHHHHHHHHhC-CcCcccCcEEEECCchHhhccCcHHHHHHHHHhCC-----------------------------
Confidence 999999999988763 35678899999999999988888888877776552
Q ss_pred ccccCCCCCcceeeeeeceeeccCchhhhcccccCCceee
Q 011605 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (481)
Q Consensus 256 ~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~ 295 (481)
+..+++++|||++.........++.+|..+.
T Consensus 203 ---------~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~ 233 (237)
T 3bor_A 203 ---------TSIQVVLLSATMPTDVLEVTKKFMRDPIRIL 233 (237)
T ss_dssp ---------TTCEEEEECSSCCHHHHHHHHHHCSSCEEEC
T ss_pred ---------CCCeEEEEEEecCHHHHHHHHHHCCCCEEEE
Confidence 2347899999999888888888887776553
No 66
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=2.5e-28 Score=217.45 Aligned_cols=206 Identities=24% Similarity=0.367 Sum_probs=165.8
Q ss_pred CCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc
Q 011605 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (481)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~ 98 (481)
.+..+|++.. |++.+.+.+.++||..|+++|.++++.++. ++++++.+|||+|||++++++++..+...
T Consensus 11 ~~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~- 79 (220)
T 1t6n_A 11 IHSSGFRDFL------LKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV- 79 (220)
T ss_dssp ---CCSTTSC------CCHHHHHHHHHTTCCCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCC-
T ss_pred ccCCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhcc-
Confidence 3344566664 999999999999999999999999999887 78999999999999999999988876543
Q ss_pred cCCccEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEE
Q 011605 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (481)
Q Consensus 99 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili 177 (481)
..+.+++|++|+++|+.|+.+.++++.... ++++..+.|+.........+. ...++|+|
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--------------------~~~~~i~v 139 (220)
T 1t6n_A 80 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK--------------------KNCPHIVV 139 (220)
T ss_dssp TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH--------------------HSCCSEEE
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh--------------------cCCCCEEE
Confidence 234589999999999999999999998766 788899999877655433322 13469999
Q ss_pred eCchHHHHHHhcCCCcccCCccEEEEechhHhhH-HHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccc
Q 011605 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (481)
Q Consensus 178 ~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (481)
+||+.+...+.. ....+.+++++|+||||++.+ .++...+..++....
T Consensus 140 ~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~------------------------------ 188 (220)
T 1t6n_A 140 GTPGRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP------------------------------ 188 (220)
T ss_dssp ECHHHHHHHHHT-TSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC------------------------------
T ss_pred eCHHHHHHHHHh-CCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC------------------------------
Confidence 999999998876 335688999999999999976 567777776665442
Q ss_pred cccCCCCCcceeeeeeceeeccCchhhhcccccCCcee
Q 011605 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294 (481)
Q Consensus 257 ~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~ 294 (481)
+..+++++|||++.........++.+|..+
T Consensus 189 --------~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 189 --------HEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp --------SSSEEEEEESCCCTTTHHHHHTTCSSCEEE
T ss_pred --------CcCeEEEEEeecCHHHHHHHHHHcCCCeEE
Confidence 234789999999998888888888777654
No 67
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.96 E-value=4.8e-29 Score=223.33 Aligned_cols=209 Identities=30% Similarity=0.435 Sum_probs=166.8
Q ss_pred cCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 011605 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~ 95 (481)
..|.+..+|++.. ++++.+.+++.++||..|+++|.++++.++. ++++++.+|||+|||++++++++..+.
T Consensus 13 ~~p~p~~~f~~~~-----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~ 83 (228)
T 3iuy_A 13 LIPKPTCRFKDAF-----QQYPDLLKSIIRVGILKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLD 83 (228)
T ss_dssp CCCCCCCSHHHHH-----TTCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred cCCCChhhHhhhh-----ccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 4566777788731 3999999999999999999999999999886 889999999999999999999888775
Q ss_pred Hh-----ccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhc
Q 011605 96 NR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (481)
Q Consensus 96 ~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (481)
.. ...++++||++||++|+.|+.+.++++.. .++.+..+.|+........ .+.
T Consensus 84 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------------~~~ 141 (228)
T 3iuy_A 84 SQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY-KGLKSICIYGGRNRNGQIE---------------------DIS 141 (228)
T ss_dssp ---------CCCSEEEECSSHHHHHHHHHHHHHHCC-TTCCEEEECC------CHH---------------------HHH
T ss_pred hccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcc-cCceEEEEECCCChHHHHH---------------------Hhc
Confidence 42 12567899999999999999999999863 3778888888765443322 233
Q ss_pred CCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhh
Q 011605 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250 (481)
Q Consensus 171 ~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
.+++|+|+||+++.+.+.. ....+++++++|+||||++.+.++...+..++....
T Consensus 142 ~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~------------------------ 196 (228)
T 3iuy_A 142 KGVDIIIATPGRLNDLQMN-NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVR------------------------ 196 (228)
T ss_dssp SCCSEEEECHHHHHHHHHT-TCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSC------------------------
T ss_pred CCCCEEEECHHHHHHHHHc-CCcCcccceEEEEECHHHHhccchHHHHHHHHHhCC------------------------
Confidence 5679999999999998776 335688899999999999999888888888877653
Q ss_pred hccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCcee
Q 011605 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294 (481)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~ 294 (481)
+..+++++|||++..........+.+|..+
T Consensus 197 --------------~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 226 (228)
T 3iuy_A 197 --------------PDRQTVMTSATWPDTVRQLALSYLKDPMIV 226 (228)
T ss_dssp --------------SSCEEEEEESCCCHHHHHHHHTTCSSCEEE
T ss_pred --------------cCCeEEEEEeeCCHHHHHHHHHHCCCCEEE
Confidence 234899999999988888888888777654
No 68
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.96 E-value=3.6e-29 Score=227.87 Aligned_cols=213 Identities=27% Similarity=0.433 Sum_probs=174.3
Q ss_pred CCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc-
Q 011605 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA- 98 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~- 98 (481)
+..+|+++. |++.+.+++..+||..|+++|.++++.++. ++++++.+|||+|||++++++++..+....
T Consensus 21 ~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~ 90 (253)
T 1wrb_A 21 VIENFDELK------LDPTIRNNILLASYQRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDL 90 (253)
T ss_dssp CCCSSGGGS------CCCSTTTTTTTTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ccCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhcc
Confidence 556688875 889999999999999999999999999887 789999999999999999999998876532
Q ss_pred -------cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcC
Q 011605 99 -------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (481)
Q Consensus 99 -------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (481)
..++++||++|+++|+.|+.+.+++++...++.+..+.|+........ .+..
T Consensus 91 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~ 149 (253)
T 1wrb_A 91 NQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---------------------EVQM 149 (253)
T ss_dssp ------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---------------------HHSS
T ss_pred ccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---------------------HhCC
Confidence 234689999999999999999999998877888888888876554432 2335
Q ss_pred CCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhh
Q 011605 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (481)
Q Consensus 172 ~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
+++|+|+||+++.+.+... ...+++++++|+||||++.++++...+..++.......
T Consensus 150 ~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~---------------------- 206 (253)
T 1wrb_A 150 GCHLLVATPGRLVDFIEKN-KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS---------------------- 206 (253)
T ss_dssp CCSEEEECHHHHHHHHHTT-SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCC----------------------
T ss_pred CCCEEEECHHHHHHHHHcC-CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCC----------------------
Confidence 6799999999999988764 35678899999999999999988888888887542211
Q ss_pred ccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCC
Q 011605 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (481)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~ 298 (481)
....+.+++|||++..........+.++..+....
T Consensus 207 ------------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 241 (253)
T 1wrb_A 207 ------------GINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGR 241 (253)
T ss_dssp ------------GGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred ------------CCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECC
Confidence 02447999999999888888888888877665443
No 69
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.96 E-value=6.1e-29 Score=221.16 Aligned_cols=205 Identities=22% Similarity=0.353 Sum_probs=168.3
Q ss_pred CcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCC
Q 011605 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (481)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~ 101 (481)
.+|+++. |++.+.++++++||..|+++|.++++.++. ++++++.+|||+|||++++++++..+... ..+
T Consensus 4 ~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-~~~ 72 (219)
T 1q0u_A 4 TQFTRFP------FQPFIIEAIKTLRFYKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPE-RAE 72 (219)
T ss_dssp CCGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTT-SCS
T ss_pred CCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhC-cCC
Confidence 4577775 999999999999999999999999999886 78999999999999999999998877654 345
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhcccc----CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEE
Q 011605 102 LRALVVLPTRDLALQVKDVFAAIAPAV----GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (481)
Q Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili 177 (481)
.+++|++||++|+.|+.+.+++++... ++.+..+.|+....... ..+..+++|+|
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------------~~~~~~~~Iiv 131 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---------------------EKLNVQPHIVI 131 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---------------------CCCSSCCSEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---------------------HHcCCCCCEEE
Confidence 689999999999999999999998765 67777888876543221 11234679999
Q ss_pred eCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhcccccc
Q 011605 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (481)
Q Consensus 178 ~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (481)
+||+.+.+.+.. ....+..++++|+||||++.++++...+..++..+.
T Consensus 132 ~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------------- 179 (219)
T 1q0u_A 132 GTPGRINDFIRE-QALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP------------------------------- 179 (219)
T ss_dssp ECHHHHHHHHHT-TCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC-------------------------------
T ss_pred eCHHHHHHHHHc-CCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCC-------------------------------
Confidence 999999998876 335678899999999999988888888877776653
Q ss_pred ccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecC
Q 011605 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (481)
Q Consensus 258 ~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~ 297 (481)
+..+++++|||++.....+...++.+|..+...
T Consensus 180 -------~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 180 -------KDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp -------TTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred -------cccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 234789999999998888888888888766443
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.6e-29 Score=227.70 Aligned_cols=220 Identities=27% Similarity=0.469 Sum_probs=171.7
Q ss_pred cCCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHH
Q 011605 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~ 95 (481)
..|.+..+|+++. ..+ ++++.+.+.+.++||..|+++|.++++.++. ++++++.+|||+|||++|+++++..+.
T Consensus 19 ~~p~~~~~f~~l~-~~~-~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~ 92 (245)
T 3dkp_A 19 DLPDPIATFQQLD-QEY-KINSRLLQNILDAGFQMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLK 92 (245)
T ss_dssp SCCCCCSSHHHHH-HHH-CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred CCCCcccCHHHhh-hcc-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4566677777761 000 3999999999999999999999999999886 789999999999999999999998887
Q ss_pred HhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcE
Q 011605 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175 (481)
Q Consensus 96 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 175 (481)
.....+.+++|++||++|+.|+.+.+++++...++.+..+.|+....... ......+++|
T Consensus 93 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~I 152 (245)
T 3dkp_A 93 QPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKF--------------------GPKSSKKFDI 152 (245)
T ss_dssp SCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTT--------------------STTSCCCCCE
T ss_pred hcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHh--------------------hhhhcCCCCE
Confidence 65456678999999999999999999999887788777766654321110 0112356799
Q ss_pred EEeCchHHHHHHhcCC-CcccCCccEEEEechhHhhHH---HHhhhHHHHHHhcccccccccccccccccccccchhhhh
Q 011605 176 LVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE---AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (481)
Q Consensus 176 li~T~~~l~~~l~~~~-~~~~~~~~~iVvDE~H~l~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
+|+||+++...+.... ...+++++++|+||||++.++ ++...+..++.....
T Consensus 153 ~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~------------------------ 208 (245)
T 3dkp_A 153 LVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS------------------------ 208 (245)
T ss_dssp EEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC------------------------
T ss_pred EEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC------------------------
Confidence 9999999999887753 356889999999999999885 455555555433321
Q ss_pred ccccccccCCCCCcceeeeeeceeeccCchhhhcccccCCceeecCC
Q 011605 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (481)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~~~ 298 (481)
+..+.+++|||++.....+....+.++..+....
T Consensus 209 -------------~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 209 -------------HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp -------------TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred -------------CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 3447899999999999999998888887765543
No 71
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.96 E-value=9.5e-29 Score=220.91 Aligned_cols=208 Identities=25% Similarity=0.417 Sum_probs=167.4
Q ss_pred CCCCCCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHH
Q 011605 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (481)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~ 96 (481)
.|+...+|+++. |++.+.+.++++||..|+++|.++++.++. ++++++.+|||+|||++++++++..+..
T Consensus 9 ~~~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~ 78 (224)
T 1qde_A 9 YDKVVYKFDDME------LDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDT 78 (224)
T ss_dssp CCCCCCCGGGGT------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCT
T ss_pred cCcccCChhhcC------CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 345566788885 999999999999999999999999999886 7899999999999999999999887765
Q ss_pred hccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEE
Q 011605 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (481)
Q Consensus 97 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il 176 (481)
. ..+.++||++|+++|+.|+.+.+.+++...++.+..+.|+......... ...++|+
T Consensus 79 ~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~ii 135 (224)
T 1qde_A 79 S-VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG----------------------LRDAQIV 135 (224)
T ss_dssp T-CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC--------------------------------CTTCSEE
T ss_pred c-CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc----------------------CCCCCEE
Confidence 4 3456899999999999999999999988778888888888765443211 1236999
Q ss_pred EeCchHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccc
Q 011605 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (481)
Q Consensus 177 i~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (481)
|+||+.+.+.+... ...+++++++|+||||++.++++...+..++....
T Consensus 136 v~Tp~~l~~~~~~~-~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~------------------------------ 184 (224)
T 1qde_A 136 VGTPGRVFDNIQRR-RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------------------------------ 184 (224)
T ss_dssp EECHHHHHHHHHTT-SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC------------------------------
T ss_pred EECHHHHHHHHHhC-CcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCC------------------------------
Confidence 99999999888763 45678899999999999988888887877776653
Q ss_pred cccCCCCCcceeeeeeceeeccCchhhhcccccCCceeec
Q 011605 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (481)
Q Consensus 257 ~~~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~ 296 (481)
+..+++++|||++.........++.+|..+..
T Consensus 185 --------~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~ 216 (224)
T 1qde_A 185 --------PTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 216 (224)
T ss_dssp --------TTCEEEEEESSCCHHHHHHHHHHCSSCEEEC-
T ss_pred --------ccCeEEEEEeecCHHHHHHHHHHCCCCEEEEe
Confidence 23478999999998888888888887776544
No 72
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.96 E-value=8.2e-29 Score=230.02 Aligned_cols=205 Identities=21% Similarity=0.306 Sum_probs=169.1
Q ss_pred CCcccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccC
Q 011605 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~ 100 (481)
..+|+++. |++.+.+.+..+||..|+++|.++++.++.. .++++++++|||+|||++|+++++..+... ..
T Consensus 91 ~~~f~~l~------l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-~~ 161 (300)
T 3fmo_B 91 VKSFEELR------LKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-NK 161 (300)
T ss_dssp CCCSGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTT-SC
T ss_pred cCCHhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhcc-CC
Confidence 45666664 9999999999999999999999999998862 138999999999999999999999887664 35
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 101 CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
++++||++||++|+.|+.+.++.++... ++.+....|+...... ...+++|+|+|
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~IlV~T 217 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGT 217 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT------------------------CCCCCSEEEEC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh------------------------hcCCCCEEEEC
Confidence 6689999999999999999999998754 6777777777653211 12457999999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEechhHhhH-HHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccc
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (481)
|+++.+++.+...+.+++++++|+||||++.+ .++...+..+...+.
T Consensus 218 P~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~-------------------------------- 265 (300)
T 3fmo_B 218 PGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------------- 265 (300)
T ss_dssp HHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC--------------------------------
T ss_pred HHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC--------------------------------
Confidence 99999999775566788999999999999987 677777777766553
Q ss_pred cCCCCCcceeeeeeceeeccCchhhhcccccCCceeec
Q 011605 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (481)
Q Consensus 259 ~~~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~~ 296 (481)
+..+++++|||++.....++..++.+|..+..
T Consensus 266 ------~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 266 ------RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp ------TTCEEEEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred ------CCCEEEEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 23489999999999999999999988876654
No 73
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.96 E-value=6.5e-28 Score=212.77 Aligned_cols=201 Identities=34% Similarity=0.514 Sum_probs=164.2
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHh--ccC
Q 011605 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVR 100 (481)
Q Consensus 23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~--~~~ 100 (481)
+|++++ |++++.+.++++||..|+++|.++++.++. ++++++.+|||+|||++++++++..+... ...
T Consensus 2 ~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~ 71 (207)
T 2gxq_A 2 EFKDFP------LKPEILEALHGRGLTTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGR 71 (207)
T ss_dssp CGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTC
T ss_pred ChhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCC
Confidence 466665 999999999999999999999999999886 78999999999999999999988877542 124
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCc
Q 011605 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~ 180 (481)
+++++|++|+++|+.|+.+.+.+++.. +++..+.|+......... +..+++|+|+||
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------------------~~~~~~i~v~T~ 128 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEA---------------------LLRGADAVVATP 128 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHH---------------------HHHCCSEEEECH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHH---------------------hhCCCCEEEECH
Confidence 568999999999999999999999764 667777777765443222 224679999999
Q ss_pred hHHHHHHhcCCCcccCCccEEEEechhHhhHHHHhhhHHHHHHhcccccccccccccccccccccchhhhhccccccccC
Q 011605 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
+.+.+.+.. ....+.+++++|+||||++.+.++...+..++....
T Consensus 129 ~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~---------------------------------- 173 (207)
T 2gxq_A 129 GRALDYLRQ-GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP---------------------------------- 173 (207)
T ss_dssp HHHHHHHHH-TSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSC----------------------------------
T ss_pred HHHHHHHHc-CCcchhhceEEEEEChhHhhccchHHHHHHHHHhCC----------------------------------
Confidence 999998876 345688899999999999988888888887766542
Q ss_pred CCCCcceeeeeeceeeccCchhhhcccccCCceee
Q 011605 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (481)
Q Consensus 261 ~~~~~~~~~v~~sat~~~~~~~~~~~~~~~~~~~~ 295 (481)
+..+.+++|||++.........++.+|..+.
T Consensus 174 ----~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 174 ----PSRQTLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp ----TTSEEEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred ----ccCeEEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 2347899999999888888888887776553
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.93 E-value=8.1e-24 Score=216.52 Aligned_cols=111 Identities=21% Similarity=0.295 Sum_probs=103.6
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEc
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~ 410 (481)
.+.++||||++...++.+++.|.+.+ +.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~ 514 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHG---IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAIL 514 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEET
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcC---CCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEe
Confidence 57799999999999999999999877 788999999999999999999999999999999999999999999999999
Q ss_pred CC-----CCChhHHHHHhhhcccCCCCccEEEEeecchHH
Q 011605 411 DK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445 (481)
Q Consensus 411 ~~-----~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 445 (481)
+. |.+..+|+||+||+||.+ .|.|+++++..+..
T Consensus 515 d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~ 553 (664)
T 1c4o_A 515 DADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEA 553 (664)
T ss_dssp TTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHH
T ss_pred CCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHH
Confidence 97 889999999999999984 79999999876543
No 75
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.93 E-value=6.5e-25 Score=184.99 Aligned_cols=148 Identities=26% Similarity=0.453 Sum_probs=137.3
Q ss_pred cccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCC
Q 011605 306 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385 (481)
Q Consensus 306 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 385 (481)
.+.++........|...+..++.....+++||||++...++.+++.|...+ ..+..+||+|+..+|..+++.|++|+
T Consensus 9 ~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 9 NIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLG---YPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 345555666678899999999988888899999999999999999999876 88999999999999999999999999
Q ss_pred ceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcC
Q 011605 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (481)
Q Consensus 386 ~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (481)
.+|||+|+++++|+|+|++++||+++.|+++..|.||+||+||.|+.|.+++++...+...+.++.+.+..
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 156 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGF 156 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTS
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988743
No 76
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=3.6e-25 Score=187.10 Aligned_cols=155 Identities=27% Similarity=0.452 Sum_probs=133.4
Q ss_pred cccccCCCc-hHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceE
Q 011605 310 YKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388 (481)
Q Consensus 310 ~~~~~~~~~-k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~i 388 (481)
+........ |...+.++++....+++||||++...++.+++.|...+ ..+..+||+++..+|..+++.|++|+.+|
T Consensus 7 ~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 83 (165)
T 1fuk_A 7 FYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFRSGSSRI 83 (165)
T ss_dssp EEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred EEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHcCCCEE
Confidence 333444444 89999999998888999999999999999999999876 78999999999999999999999999999
Q ss_pred EEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCCchh
Q 011605 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSL 468 (481)
Q Consensus 389 Lv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (481)
||+|+++++|+|+|++++||+++.|+++..|.||+||+||.|+.|.|++++...+...+.++.+.+...- ..+|..+
T Consensus 84 lv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 160 (165)
T 1fuk_A 84 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQI---EELPSDI 160 (165)
T ss_dssp EEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCC---EECCSCC
T ss_pred EEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCc---cccCccH
Confidence 9999999999999999999999999999999999999999999999999999999999999988875543 5555554
Q ss_pred hh
Q 011605 469 IE 470 (481)
Q Consensus 469 ~~ 470 (481)
.+
T Consensus 161 ~~ 162 (165)
T 1fuk_A 161 AT 162 (165)
T ss_dssp TT
T ss_pred Hh
Confidence 43
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=5.5e-25 Score=188.99 Aligned_cols=161 Identities=29% Similarity=0.484 Sum_probs=130.9
Q ss_pred ccccccccccCCCchHHHHHHHHHhc-CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhc
Q 011605 305 ERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (481)
Q Consensus 305 ~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 383 (481)
..+..+........|...+.+++... .++++||||++...++.+++.|...+ ..+..+||+++..+|..+++.|++
T Consensus 18 ~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g---~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 18 ENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp TTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT---CCEEEEC--------CHHHHHHHH
T ss_pred CCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC---CceEEEeCCCCHHHHHHHHHHHHc
Confidence 44555555666778999999988887 57899999999999999999999876 889999999999999999999999
Q ss_pred CCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCC
Q 011605 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHS 463 (481)
Q Consensus 384 g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (481)
|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.|++++...+...+.++++.+.... .+
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~---~~ 171 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK---QE 171 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTT---CC
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhcc---CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887765 67
Q ss_pred CCchhhhh
Q 011605 464 IPSSLIES 471 (481)
Q Consensus 464 ~~~~~~~~ 471 (481)
+|+.+.++
T Consensus 172 ~~~~l~~~ 179 (185)
T 2jgn_A 172 VPSWLENM 179 (185)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
Confidence 77765554
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=1.3e-24 Score=184.64 Aligned_cols=156 Identities=26% Similarity=0.399 Sum_probs=136.8
Q ss_pred cccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCC
Q 011605 306 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385 (481)
Q Consensus 306 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 385 (481)
.+.++........|...+.++++....+++||||++...++.+++.|...+ ..+..+||+|+..+|..+++.|++|+
T Consensus 5 ~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcC---CCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 345556666678899999999998888999999999999999999999876 78999999999999999999999999
Q ss_pred ceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecc-hHHHHHHHHHHhcCCCCCCCCC
Q 011605 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLLQKADNDSCPIHSI 464 (481)
Q Consensus 386 ~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 464 (481)
.+|||||+++++|+|+|++++||+++.|+++..|+||+||+||.|+.|.+++++... +...+..+.+.+.. ...++
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~ 158 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV---NISEL 158 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCC---CEEEC
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhc---chhhC
Confidence 999999999999999999999999999999999999999999999999999999876 45677777777643 23455
Q ss_pred Cch
Q 011605 465 PSS 467 (481)
Q Consensus 465 ~~~ 467 (481)
|..
T Consensus 159 ~~~ 161 (172)
T 1t5i_A 159 PDE 161 (172)
T ss_dssp C--
T ss_pred Chh
Confidence 544
No 79
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=1.9e-23 Score=210.07 Aligned_cols=131 Identities=25% Similarity=0.295 Sum_probs=108.9
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
+|+ .|++.|..++..++. |+ +..+.||+|||+++.+|++-.... +..++|++||+.|+.|.+.++..++
T Consensus 76 lG~-~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~aL~----G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNALT----GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHHTT----CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHHHh----CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 899 999999999998775 55 999999999999999998644433 3479999999999999999999999
Q ss_pred cccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHH-HHHHhcCC-----CcccC---
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLE--- 196 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l-~~~l~~~~-----~~~~~--- 196 (481)
..+|++++++.|+.+...... ..+++|+|+||..+ ++++.... ...++
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r~~-----------------------ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~ 201 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAERRK-----------------------AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDH 201 (997)
T ss_dssp HTTTCCEEECCTTCCHHHHHH-----------------------HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSS
T ss_pred HhcCCeEEEEeCCCCHHHHHH-----------------------HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCC
Confidence 999999999999887443322 13569999999999 77776542 24567
Q ss_pred CccEEEEechhHhh
Q 011605 197 HLCYLVVDETDRLL 210 (481)
Q Consensus 197 ~~~~iVvDE~H~l~ 210 (481)
.+.++|+||+|.++
T Consensus 202 ~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 202 PLHYAIIDEVDSIL 215 (997)
T ss_dssp SSCEEEETTHHHHT
T ss_pred CcceEEEechHHHH
Confidence 89999999999976
No 80
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.92 E-value=7.1e-23 Score=209.41 Aligned_cols=111 Identities=25% Similarity=0.344 Sum_probs=103.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEc
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~ 410 (481)
.+.++||||++...++.+++.|.+.+ ..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~ 520 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIG---IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAIL 520 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEET
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcC---CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEe
Confidence 46799999999999999999999876 788999999999999999999999999999999999999999999999999
Q ss_pred CC-----CCChhHHHHHhhhcccCCCCccEEEEeecchHH
Q 011605 411 DK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445 (481)
Q Consensus 411 ~~-----~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 445 (481)
+. |.+..+|+||+||+||. ..|.|+++++..+..
T Consensus 521 d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~ 559 (661)
T 2d7d_A 521 DADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKS 559 (661)
T ss_dssp TTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHH
T ss_pred CcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHH
Confidence 97 88999999999999998 689999999886543
No 81
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.92 E-value=1.7e-24 Score=186.72 Aligned_cols=175 Identities=25% Similarity=0.355 Sum_probs=135.0
Q ss_pred cccCCceeecCCccccCcccccccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcc
Q 011605 287 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366 (481)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~ 366 (481)
++.+|..+...... .....+..+........|...+..++... ++++||||++...++.+++.|...+ ..+..+|
T Consensus 11 ~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g---~~~~~lh 85 (191)
T 2p6n_A 11 VDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKG---VEAVAIH 85 (191)
T ss_dssp ------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHT---CCEEEEC
T ss_pred ccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcC---CcEEEEe
Confidence 34455444333322 22334445555566678888888888765 5689999999999999999999876 8899999
Q ss_pred cccChHHHHHHHHHHhcCCceEEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecc-hHH
Q 011605 367 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVK 445 (481)
Q Consensus 367 ~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~ 445 (481)
|+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++++... +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876 667
Q ss_pred HHHHHHHHhcCCCCCCCCCCchhh
Q 011605 446 RFKKLLQKADNDSCPIHSIPSSLI 469 (481)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~ 469 (481)
.+..+.+.+.... .++|+.+.
T Consensus 166 ~~~~l~~~l~~~~---~~~p~~l~ 186 (191)
T 2p6n_A 166 VLMDLKALLLEAK---QKVPPVLQ 186 (191)
T ss_dssp HHHHHHHHHHHTT---CCCCHHHH
T ss_pred HHHHHHHHHHHcc---CcCCHHHH
Confidence 7777777776655 56676643
No 82
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=5.1e-24 Score=187.33 Aligned_cols=146 Identities=30% Similarity=0.448 Sum_probs=133.9
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCce
Q 011605 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387 (481)
Q Consensus 308 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 387 (481)
...........|...+..++....++++||||++...++.+++.|...+ ..+..+||+++..+|..+++.|++|+.+
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT---CCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 3445556678899999999998889999999999999999999999876 8899999999999999999999999999
Q ss_pred EEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcC
Q 011605 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (481)
Q Consensus 388 iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (481)
|||||+++++|+|+|++++||+++.|+++..|.||+||+||.|+.|.|+++++..+...+..+.+.++.
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999998888754
No 83
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=3.3e-24 Score=183.05 Aligned_cols=148 Identities=29% Similarity=0.507 Sum_probs=130.9
Q ss_pred cccccccccCCC-chHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcC
Q 011605 306 RLESYKLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384 (481)
Q Consensus 306 ~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 384 (481)
.+.++....... .|...+..++.....+++||||++...++.+++.|...+ ..+..+||+|+..+|..+++.|++|
T Consensus 7 ~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 7 NIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG---HQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred CceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 444455555544 488999999988888899999999999999999999876 7899999999999999999999999
Q ss_pred CceEEEEccccccCCCCCCCcEEEEcCCC------CChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcC
Q 011605 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (481)
Q Consensus 385 ~~~iLv~t~~l~~Gvdl~~~~~Vi~~~~~------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (481)
+.+|||+|+++++|+|+|++++||+++.| .+...|+||+||+||.|+.|.+++++...+.+.+.++.+.+..
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 99999999999999999999999999999 8899999999999999999999999999999999999988854
No 84
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=1.8e-23 Score=209.84 Aligned_cols=153 Identities=19% Similarity=0.123 Sum_probs=91.6
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
.|| .||++|.+++..+...+..++++++.+|||+|||++++++++.. +.+++|++||++|+.|+.+++..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------~~~~~~~~~t~~l~~q~~~~~~~l- 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------KKKVLIFTRTHSQLDSIYKNAKLL- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------TCEEEEEESCHHHHHHHHHHHGGG-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------CCcEEEEcCCHHHHHHHHHHHHhc-
Confidence 577 89999999988776655568899999999999999999887642 348999999999999999887764
Q ss_pred cccCceEEEeccCcchHHHHHHHhhcc----------cc--ccCc--------------cCChhhHHHhhcCCCcEEEeC
Q 011605 126 PAVGLSVGLAVGQSSIADEISELIKRP----------KL--EAGI--------------CYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~--~~~~--------------~~~~~~~~~~~~~~~~Ili~T 179 (481)
++++..+.|............... .. ..+. ..=+....+.....++|+|+|
T Consensus 75 ---~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n 151 (540)
T 2vl7_A 75 ---GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMT 151 (540)
T ss_dssp ---TCCEEEC---------------------------------------------------------CTTGGGCSEEEEE
T ss_pred ---CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEC
Confidence 666666666542111100000000 00 0000 000111123334567999999
Q ss_pred chHHHHHHhcCC-C-----cccCCccEEEEechhHhh
Q 011605 180 PGRLMDHINATR-G-----FTLEHLCYLVVDETDRLL 210 (481)
Q Consensus 180 ~~~l~~~l~~~~-~-----~~~~~~~~iVvDE~H~l~ 210 (481)
|..+++...... . ..+...+++||||||++.
T Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 152 YPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp THHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 999977443211 0 023567899999999983
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=5.8e-23 Score=188.89 Aligned_cols=146 Identities=29% Similarity=0.448 Sum_probs=131.3
Q ss_pred cccccccCCCchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCce
Q 011605 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387 (481)
Q Consensus 308 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 387 (481)
.++........|...+..++....++++||||++...++.+++.|...+ ..+..+||+++..+|..+++.|++|+.+
T Consensus 4 ~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g---~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 4 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTT---CCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred EEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 4455666778899999999988889999999999999999999998776 8899999999999999999999999999
Q ss_pred EEEEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcC
Q 011605 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (481)
Q Consensus 388 iLv~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (481)
|||||+++++|+|+|++++||+++.|++...|+||+||+||.|+.|.|+++++..+...+..+.+.+..
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999988888754
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.81 E-value=1.5e-24 Score=184.21 Aligned_cols=141 Identities=33% Similarity=0.504 Sum_probs=128.9
Q ss_pred cccCC-CchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEE
Q 011605 312 LICES-KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390 (481)
Q Consensus 312 ~~~~~-~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv 390 (481)
..... ..|...+.++++...++++||||++...++.+++.|+..+ ..+..+||+++..+|..+++.|++|+.+|||
T Consensus 9 ~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLv 85 (170)
T 2yjt_D 9 YRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAG---INNCYLEGEMVQGKRNEAIKRLTEGRVNVLV 85 (170)
Confidence 33344 6778888888887777899999999999999999998776 7899999999999999999999999999999
Q ss_pred EccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhc
Q 011605 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 391 ~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
||+++++|+|+|++++||+++.|+++..|+||+||+||.|+.|.+++++...+...+.++.+.++
T Consensus 86 aT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 86 ATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 99999999999999999999999999999999999999999999999999999888888887664
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.87 E-value=2.3e-21 Score=195.36 Aligned_cols=155 Identities=19% Similarity=0.095 Sum_probs=109.1
Q ss_pred CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011605 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 47 ~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (481)
|| ++|++|.+++..+...+..++++++.+|||+|||+++++|++. .+.+++|++||++|+.|+.+++..+..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 45 7999999998887766667899999999999999999999886 245899999999999999999998877
Q ss_pred ccCceEEEeccCcchHHH--------------------------------HHHHhhccccccCccCChhhHHHhhcCCCc
Q 011605 127 AVGLSVGLAVGQSSIADE--------------------------------ISELIKRPKLEAGICYDPEDVLQELQSAVD 174 (481)
Q Consensus 127 ~~~~~~~~~~g~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (481)
..++++..+.|...+... .....+..+ .....-+....+.....++
T Consensus 73 ~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G--~~~~~Cpy~~ar~~~~~ad 150 (551)
T 3crv_A 73 KRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDG--LQDKFCPYYSLLNSLYKAD 150 (551)
T ss_dssp SSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHH--HHHTCCHHHHHHHHGGGCS
T ss_pred hcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcC--CcCCcCccHHHHhhhhcCC
Confidence 667888887775432100 000000000 0000112233345556789
Q ss_pred EEEeCchHHHHHHhcCCCcccCCccEEEEechhHhhH
Q 011605 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (481)
Q Consensus 175 Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l~~ 211 (481)
|+|+||..+++...+..........++||||||++.+
T Consensus 151 IVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 151 VIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9999999998865442211124677999999999887
No 88
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.85 E-value=2.8e-20 Score=188.67 Aligned_cols=89 Identities=21% Similarity=0.177 Sum_probs=74.9
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (481)
+||+.|.+++..+...+..++++++.+|||+|||+++++|++..+... +.+++|++||++++.|+.+++..+....+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~---~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER---KLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc---CCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 689999999988777666789999999999999999999999887653 34899999999999999999998877667
Q ss_pred ceEEEeccCcch
Q 011605 130 LSVGLAVGQSSI 141 (481)
Q Consensus 130 ~~~~~~~g~~~~ 141 (481)
+++..+.|....
T Consensus 80 ~~~~~l~gr~~l 91 (620)
T 4a15_A 80 IRAIPMQGRVNM 91 (620)
T ss_dssp CCEEECCCHHHH
T ss_pred eEEEEEECCCcc
Confidence 788777776653
No 89
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.84 E-value=8.2e-21 Score=168.34 Aligned_cols=144 Identities=21% Similarity=0.230 Sum_probs=103.4
Q ss_pred CCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc--cCCccEEEEcccHHHHHH-HHHHHH
Q 011605 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQ-VKDVFA 122 (481)
Q Consensus 46 ~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~--~~~~~~lil~Pt~~L~~q-~~~~~~ 122 (481)
.....|+++|.++++.++. ++++++.+|||+|||+++++++...+.... ..+.+++|++|+++|+.| +.+.+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred cCCCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 4456899999999999886 789999999999999999998887776542 235689999999999999 778888
Q ss_pred HhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCC-----cccCC
Q 011605 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-----FTLEH 197 (481)
Q Consensus 123 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~-----~~~~~ 197 (481)
.+... ++.+..+.|+......... ...+++|+|+||+.+...+..... ..+.+
T Consensus 105 ~~~~~-~~~v~~~~g~~~~~~~~~~---------------------~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~ 162 (216)
T 3b6e_A 105 PFLKK-WYRVIGLSGDTQLKISFPE---------------------VVKSCDIIISTAQILENSLLNLENGEDAGVQLSD 162 (216)
T ss_dssp HHHTT-TSCEEECCC---CCCCHHH---------------------HHHHCSEEEEEHHHHHHHHHC-------CCCGGG
T ss_pred HHhcc-CceEEEEeCCcccchhHHh---------------------hccCCCEEEECHHHHHHHHhccCcccccccchhc
Confidence 88665 6778888777643322111 113469999999999988876432 45778
Q ss_pred ccEEEEechhHhhHHHHh
Q 011605 198 LCYLVVDETDRLLREAYQ 215 (481)
Q Consensus 198 ~~~iVvDE~H~l~~~~~~ 215 (481)
+++||+||||++.+.++.
T Consensus 163 ~~~iIiDEah~~~~~~~~ 180 (216)
T 3b6e_A 163 FSLIIIDECHHTNKEAVY 180 (216)
T ss_dssp CSEEEETTC-------CH
T ss_pred ccEEEEECchhhccCCcH
Confidence 999999999998765443
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.80 E-value=4.9e-19 Score=158.57 Aligned_cols=180 Identities=21% Similarity=0.255 Sum_probs=118.4
Q ss_pred CcccccCCCCCCcccCCCCCCCC--CC-----CHHHHHHHH--------------HCCCCccchhhHHhHHhhhCCCCCC
Q 011605 11 VLPWMRSPVDVSLFEDCPLDHLP--CL-----DPRLKVALQ--------------NMGISSLFPVQVAVWQETIGPGLFE 69 (481)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~--~l-----~~~l~~~~~--------------~~~~~~~~~~Q~~~~~~~~~~~~~~ 69 (481)
+++|.+.-..++.|...+++..+ .+ ++.+.+.+. ......++++|.++++.+.. +
T Consensus 1 ~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~q~~~i~~i~~----g 76 (235)
T 3llm_A 1 VVPWSPPQSNWNPWTSSNIDEGPLAFATPEQISMDLKNELMYQLEQDHDLQAILQERELLPVKKFESEILEAISQ----N 76 (235)
T ss_dssp CCCCCCCCTTEETTTTEECCSSTTTTSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGGGHHHHHHHHHH----C
T ss_pred CcCCCCCCCCCCCCcCCccCCCCcccCChhhhcHHHHHHHHHHhhcCHHHHHHHHHHhcCChHHHHHHHHHHHhc----C
Confidence 36788887777777766654332 11 222222222 11223578999999998775 8
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhc-cCCccEEEEcccHHHHHHHHHHHHHhcc-ccCceEEEeccCcchHHHHHH
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAP-AVGLSVGLAVGQSSIADEISE 147 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~ 147 (481)
+++++.||||+|||..+..+++....... ..+.+++++.|+++++.|+.+.+..... ..+..++.......
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~------- 149 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFES------- 149 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-------
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhh-------
Confidence 89999999999999888777776655432 2345899999999999999888776542 12222222111000
Q ss_pred HhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHh-hHHHHh-hhHHHHHHh
Q 011605 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-LREAYQ-AWLPTVLQL 224 (481)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l-~~~~~~-~~~~~l~~~ 224 (481)
.....+++|+|+||+.+.+.+.. .++++++||+||+|.+ .+.++. ..+..+...
T Consensus 150 -------------------~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 150 -------------------ILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp -------------------ECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred -------------------ccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 00113468999999999998865 3788999999999985 555554 344555443
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.78 E-value=4.8e-19 Score=163.42 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=98.5
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (481)
.|+++|.+++..++. +.+.++++|||+|||++++.++...+..+ ..++||++|+++|+.||.+++.+++...+
T Consensus 113 ~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC---SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred CccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC---CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 799999999998876 56789999999999999987776655442 23799999999999999999999876555
Q ss_pred ceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhHh
Q 011605 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 130 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l 209 (481)
..+..+.++..... ......+|+|+||+.+.+.. ...+.++++||+||||++
T Consensus 186 ~~~~~~~~~~~~~~------------------------~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~ 237 (282)
T 1rif_A 186 AMIKKIGGGASKDD------------------------KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLA 237 (282)
T ss_dssp GGEEECSTTCSSTT------------------------CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGC
T ss_pred ceEEEEeCCCcchh------------------------hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccC
Confidence 66666666653221 11245699999999875432 234678899999999998
Q ss_pred hHH
Q 011605 210 LRE 212 (481)
Q Consensus 210 ~~~ 212 (481)
.+.
T Consensus 238 ~~~ 240 (282)
T 1rif_A 238 TGK 240 (282)
T ss_dssp CHH
T ss_pred Ccc
Confidence 643
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.74 E-value=9.4e-18 Score=152.42 Aligned_cols=125 Identities=15% Similarity=0.233 Sum_probs=97.2
Q ss_pred CCCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhc-cccceeEEEcccccChHHHHHHHHHHhcC-Cce-EE
Q 011605 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VL 389 (481)
Q Consensus 315 ~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-iL 389 (481)
....|...+.+++... .++++||||++...+..+...|... + ..+..+||+++..+|.++++.|+++ +.+ +|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L 169 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIV 169 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHC---SCCCEECTTSCHHHHHHHHHHHHHCTTCCEEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHhcCCCCCCEEE
Confidence 4567888888888776 6889999999999999999999874 5 7788999999999999999999998 676 78
Q ss_pred EEccccccCCCCCCCcEEEEcCCCCChhHHHHHhhhcccCCCCccEEE--Eeecc
Q 011605 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT--LLHKD 442 (481)
Q Consensus 390 v~t~~l~~Gvdl~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~--~~~~~ 442 (481)
++|.++++|+|++++++||++++||++..+.|++||++|.|+.+.+++ ++..+
T Consensus 170 ~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 170 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp EECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred EehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 899999999999999999999999999999999999999999876644 44444
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.74 E-value=1.3e-17 Score=149.06 Aligned_cols=116 Identities=28% Similarity=0.307 Sum_probs=92.3
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (481)
.|+++|.+++..++. ++++++++|||+|||.+++.++... +.+++|++|+++|+.||.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~~----~ 157 (237)
T 2fz4_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----G 157 (237)
T ss_dssp CCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS-------CSCEEEEESSHHHHHHHHHHHGGG----C
T ss_pred CcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHhC----C
Confidence 789999999998775 5679999999999999987765541 447999999999999999988874 6
Q ss_pred ce-EEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 130 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 130 ~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
+. +..+.|+.. ...+|+|+|++.+....... ...+++||+||+|+
T Consensus 158 ~~~v~~~~g~~~------------------------------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~ 203 (237)
T 2fz4_A 158 EEYVGEFSGRIK------------------------------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHH 203 (237)
T ss_dssp GGGEEEESSSCB------------------------------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSC
T ss_pred CCeEEEEeCCCC------------------------------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCcc
Confidence 66 777777653 23489999999987765431 24589999999999
Q ss_pred hhHHHH
Q 011605 209 LLREAY 214 (481)
Q Consensus 209 l~~~~~ 214 (481)
+.+..+
T Consensus 204 l~~~~~ 209 (237)
T 2fz4_A 204 LPAESY 209 (237)
T ss_dssp CCTTTH
T ss_pred CCChHH
Confidence 865443
No 94
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.26 E-value=2.5e-06 Score=87.53 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=53.0
Q ss_pred CccchhhHHhHHhhhCCCCCCC-CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 49 SSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~-~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
..+++.|.+|+..++. .+ -.+|.||+|||||.+..-.+...+.. +.++|+++||..-++++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~----~~~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS----QKELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHH----CSSEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhc----CCCceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHHhc
Confidence 4678999999998875 34 47899999999999865544444433 348999999999999888887655
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.23 E-value=2.6e-06 Score=86.35 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=58.3
Q ss_pred HHHHHHHHC-CCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHH--hHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 38 RLKVALQNM-GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS--YALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 38 ~l~~~~~~~-~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~--~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
.+...+.++ .-..-.+.|.+++..++. ++.+++.|++|||||.+ ++++.+..+. ...+.++++++||...+
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~--~~~~~~vll~APTg~AA 209 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAA 209 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTC--SSCCCCEEEEBSSHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhh--hcCCCeEEEEeCChhHH
Confidence 344555543 111226889999988875 78899999999999955 3333333221 12355899999999999
Q ss_pred HHHHHHHHHhccccC
Q 011605 115 LQVKDVFAAIAPAVG 129 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~ 129 (481)
.++.+.+...+..++
T Consensus 210 ~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 210 ARLTESLGKALRQLP 224 (608)
T ss_dssp HHHHHHHTHHHHHSS
T ss_pred HHHHHHHHHHHhcCC
Confidence 998888776655443
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.08 E-value=2.9e-05 Score=79.14 Aligned_cols=70 Identities=24% Similarity=0.243 Sum_probs=53.7
Q ss_pred CCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
+..+++.|.+|+..++. +.-.++.||+|+|||.+... ++..+... .+.++++++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~-~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHH-HHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 35688999999988875 55689999999999987543 33444331 3458999999999999888877654
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=7.6e-05 Score=77.81 Aligned_cols=70 Identities=21% Similarity=0.213 Sum_probs=53.7
Q ss_pred CCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
+..+++.|.+|+..++. +.-.++.||+|||||.+....+ ..+... .+.++++++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i-~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIV-YHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHH-HHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHH-HHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 35678999999988764 5568999999999998765433 333331 2348999999999999998888765
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.96 E-value=1.1e-05 Score=79.06 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=51.4
Q ss_pred HCCCCccchhhHHhHHhhhCCCCCCC-CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHH
Q 011605 45 NMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (481)
Q Consensus 45 ~~~~~~~~~~Q~~~~~~~~~~~~~~~-~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (481)
.+.|..+++.|.+++..++..+..+. .+++.|+.|||||.+. ..++..+.... ...+++++||...+..+...+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~--~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG--ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT--CCCEEEEESSHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC--CceEEEecCcHHHHHHHHhhh
Confidence 36678889999999887764332233 7999999999999765 34454554432 236999999988776555433
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.95 E-value=7.1e-05 Score=77.94 Aligned_cols=70 Identities=24% Similarity=0.243 Sum_probs=53.5
Q ss_pred CCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 48 ~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
...+++.|.+|+..++. +.-.++.||+|+|||.+... ++..+... .+.++++++||..-+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~-~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHH-HHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHH-HHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 34678999999988875 55689999999999987543 44444432 3458999999999998888877654
No 100
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.88 E-value=0.00021 Score=64.97 Aligned_cols=127 Identities=16% Similarity=0.091 Sum_probs=89.1
Q ss_pred CCCchHHHHHHHHHhc--CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEc
Q 011605 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (481)
Q Consensus 315 ~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t 392 (481)
..+.|+..+..++... .++++|||++..+...-+.+++...+ +....+.|.....+ .+ -.++...+.+.|
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~---~~y~RlDG~~~~~~-~k----~~~~~~~i~Llt 177 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNK---VHIKRYDGHSIKSA-AA----ANDFSCTVHLFS 177 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSS---CEEEESSSCCC------------CCSEEEEEEE
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCC---CceEeCCCCchhhh-hh----cccCCceEEEEE
Confidence 3778888888888665 46799999999999999999888655 78888888854422 11 124455555556
Q ss_pred cccccCCC-----CCCCcEEEEcCCCCChhH-HHHHhhhcccC--CC--CccEEEEeecchHHHHHH
Q 011605 393 DAMTRGMD-----VEGVNNVVNYDKPAYIKT-YIHRAGRTARA--GQ--LGRCFTLLHKDEVKRFKK 449 (481)
Q Consensus 393 ~~l~~Gvd-----l~~~~~Vi~~~~~~s~~~-~~Q~~GR~~R~--~~--~g~~~~~~~~~~~~~~~~ 449 (481)
...+.|+| +..++.||.+|..|++.+ .+|.+-|+.|. |+ .-.+|.++..+..++..-
T Consensus 178 sag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l 244 (328)
T 3hgt_A 178 SEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRL 244 (328)
T ss_dssp SSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHH
T ss_pred CCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHH
Confidence 66666776 677999999999999987 49999999886 33 366777777666654433
No 101
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.72 E-value=9.3e-05 Score=74.21 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=47.0
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHH
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~ 119 (481)
.+++.|.+++..++. ++.+++.|++|+|||.+.. .++..+.. .+.++++++||...+..+.+
T Consensus 189 ~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~-~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTK-AVADLAES---LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHH-HHHHHHHH---TTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHH-HHHHHHHh---cCCeEEEecCcHHHHHHhHh
Confidence 688999999988774 6779999999999998643 34443333 34579999999888776544
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.04 E-value=0.0011 Score=68.14 Aligned_cols=71 Identities=20% Similarity=0.127 Sum_probs=55.1
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
..+++.|.+++.. .+..++|.|+.|||||.+...-+...+........+++++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 3688999888652 2567999999999999987655555555433344589999999999999999888774
No 103
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.86 E-value=0.0021 Score=66.23 Aligned_cols=71 Identities=18% Similarity=0.089 Sum_probs=55.4
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (481)
.+++-|.+++.. .+..++|.|+.|||||.+..--+...+...+....++++++.|+..+.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 477889888654 25679999999999999866555555555334456899999999999999999887754
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.72 E-value=0.0019 Score=61.71 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=31.8
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHH
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 122 (481)
.++.|+.|+|||.... ..+.. .+.+|++||++++.++.+.+.
T Consensus 164 ~~I~G~aGsGKTt~I~----~~~~~-----~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL----SRVNF-----EEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEECTTSCHHHHHH----HHCCT-----TTCEEEESCHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHH----HHhcc-----CCeEEEeCCHHHHHHHHHHhh
Confidence 6789999999998542 22211 268999999999988777764
No 105
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.67 E-value=0.0038 Score=64.69 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=55.2
Q ss_pred CccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 49 ~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
..+++.|.+++.. .+..++|.|+.|||||.+...-+...+........++|+++.|+..+.++.+.+..+.
T Consensus 10 ~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4688999888654 2567999999999999986655555555433444589999999999999998888764
No 106
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.56 E-value=0.0055 Score=57.69 Aligned_cols=72 Identities=14% Similarity=0.014 Sum_probs=53.1
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 127 (481)
.+.++|...+..+.. .+-+++..+-+.|||......++..+.. ..+..++++.|+...+..+...+..+...
T Consensus 163 ~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~--~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCF--NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHS--SSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 789999998876532 3448899999999998765555443333 24557999999999998888777776543
No 107
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.43 E-value=0.0052 Score=51.50 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=24.9
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
+=.++.+|+|+|||...+- .+.+....+.+++++.|.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~----~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMR----RVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHH----HHHHHHHTTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHH----HHHHHHHcCCeEEEEccc
Confidence 3367899999999965333 333322345689999887
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.43 E-value=0.0099 Score=50.10 Aligned_cols=38 Identities=21% Similarity=0.109 Sum_probs=25.6
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccH
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (481)
+=.++.+++|+|||...+-.+.. +. ..+.+++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r-~~---~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRR-AK---IAKQKIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH-HH---HTTCCEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHH-HH---HCCCEEEEEEecc
Confidence 33678999999999765433332 22 3455899999884
No 109
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.40 E-value=0.0061 Score=51.87 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=24.5
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHH
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (481)
.++.+++|+|||...+-.+ ..+. ..+.+++++.|...
T Consensus 31 ~vitG~M~sGKTT~Llr~~-~r~~---~~g~kvli~kp~~D 67 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRL-RRGI---YAKQKVVVFKPAID 67 (219)
T ss_dssp EEEEECTTSCHHHHHHHHH-HHHH---HTTCCEEEEEEC--
T ss_pred EEEECCCCCCHHHHHHHHH-HHHH---HcCCceEEEEeccC
Confidence 5789999999997544333 2222 33558999999865
No 110
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.36 E-value=0.013 Score=48.96 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
++.+++.||+|+|||..+-
T Consensus 38 g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp CCEEEECCSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 6779999999999998653
No 111
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.20 E-value=0.0087 Score=51.03 Aligned_cols=37 Identities=24% Similarity=0.164 Sum_probs=24.7
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHH
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (481)
.++.+++|+|||..++-.+... ...+.+++++.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~----~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRT----QFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH----HHTTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHH----HHCCCEEEEEEeccC
Confidence 4589999999998654433332 234558999999864
No 112
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.09 E-value=0.0093 Score=51.58 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=25.8
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (481)
+.=.++.|++|+|||...+-.+.. +. ..+.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r-~~---~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR-LE---YADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH-HH---HTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH-HH---hcCCEEEEEEecc
Confidence 334678999999999875443333 22 2345789887765
No 113
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.97 E-value=0.0062 Score=61.50 Aligned_cols=73 Identities=14% Similarity=0.033 Sum_probs=54.7
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (481)
.+.++|...+..+.. .+..++..+-|.|||......++..+... ++..++++.|+...+..+...++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~----~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~--~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHH----CSEEEEEECSSSCHHHHHHHHHHHHHHTS--SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhcc----ccEEEEEEcCccChHHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 478999998876521 45588999999999987654444444443 34579999999999999888888776543
No 114
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.95 E-value=0.015 Score=48.71 Aligned_cols=39 Identities=21% Similarity=0.084 Sum_probs=25.5
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (481)
+.-.++.|++|+|||..++-.+.. +.. .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~-~~~---~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI-YKL---GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH-HHH---TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH-HHH---CCCeEEEEeecc
Confidence 444678999999999875433332 222 344789988884
No 115
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.55 E-value=0.019 Score=63.16 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=54.0
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhc--cCCccEEEEcccHHHHHHHHHHHHHhc
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (481)
.+++-|.+++.. .+++++|.|+.|||||.+.+--++..+..+. ....+++++++|++.+.++.+.+...+
T Consensus 10 ~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 688999888653 2778999999999999986555555555431 244589999999999999998887643
No 116
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.55 E-value=0.016 Score=49.85 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=27.2
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (481)
+.=.++.|++|+|||...+-.+ .+....+.+++++.|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~----~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRV----RRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH----HHHHTTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHH----HHHHHCCCeEEEEeecCC
Confidence 3335789999999997644333 333345668999998864
No 117
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.069 Score=48.84 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=19.9
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHH
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~ 95 (481)
.+.++++.||+|+|||.+.-. ++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 356799999999999987543 444444
No 118
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.43 E-value=0.03 Score=51.98 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=27.8
Q ss_pred cchhhHHhHHhhhCCCCCC---CCEEEECCCCchhHHHhHH
Q 011605 51 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 51 ~~~~Q~~~~~~~~~~~~~~---~~~l~~~~tG~GKT~~~~~ 88 (481)
++|||.+++..+...+..+ ...++.||.|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 4688988887766543333 2389999999999987643
No 119
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.36 E-value=0.14 Score=47.08 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=22.8
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
+..+++.||+|+|||..+-. +...+... +..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~~~---~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAKKR---GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHHHT---TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHC---CCEEEEEE
Confidence 46799999999999976432 33333222 33566654
No 120
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.96 E-value=0.028 Score=47.87 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.6
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
.++++.||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999998643
No 121
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.43 E-value=0.32 Score=46.92 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=23.7
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (481)
...+++.||+|+|||..+-. +...+... ..+.+++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~a-ia~~l~~~-~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS-IGNYVVQN-EPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHH-HHHHHHHH-CCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEeeH
Confidence 46799999999999986532 33333222 22345666543
No 122
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.30 E-value=0.75 Score=39.08 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=14.7
Q ss_pred CCEEEECCCCchhHHHh
Q 011605 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~ 86 (481)
.++++.||+|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999764
No 123
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.20 E-value=0.066 Score=53.87 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=39.9
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHH
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (481)
.++.-|.+++..++... ....++.|+-|.|||.+.-+ ++..+. ..++|.+|+.+-+..
T Consensus 175 ~~T~dQ~~al~~~~~~~--~~~~vlta~RGRGKSa~lG~-~~a~~~------~~~~vtAP~~~a~~~ 232 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP--PGVAAVTAARGRGKSALAGQ-LISRIA------GRAIVTAPAKASTDV 232 (671)
T ss_dssp SCCHHHHHHHHHHTTCC--SEEEEEEECTTSSHHHHHHH-HHHHSS------SCEEEECSSCCSCHH
T ss_pred CCCHHHHHHHHHHHHhh--hCeEEEecCCCCCHHHHHHH-HHHHHH------hCcEEECCCHHHHHH
Confidence 56788999988877643 23478999999999965433 333222 147888999876653
No 124
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.19 E-value=0.12 Score=53.61 Aligned_cols=81 Identities=12% Similarity=0.156 Sum_probs=67.6
Q ss_pred CCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-cccCCCCCCCcEEEE
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVVN 409 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l~~Gvdl~~~~~Vi~ 409 (481)
+.+++|.+++...+.+.++.+++.. ..+..+..++|+++..++...++.+.+|+.+|+|+|.. +...+++.+++.||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 5789999999999999988887653 33578999999999999999999999999999999964 445678888888876
Q ss_pred cCC
Q 011605 410 YDK 412 (481)
Q Consensus 410 ~~~ 412 (481)
-..
T Consensus 497 DEa 499 (780)
T 1gm5_A 497 DEQ 499 (780)
T ss_dssp ESC
T ss_pred ccc
Confidence 443
No 125
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.72 E-value=0.18 Score=46.99 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.1
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
.++++.||+|+|||..+-
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 459999999999997653
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.46 E-value=0.094 Score=49.53 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+..+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 5679999999999998653
No 127
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.08 E-value=0.21 Score=47.79 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=65.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-cc---cCCCCCCCcE
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MT---RGMDVEGVNN 406 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l~---~Gvdl~~~~~ 406 (481)
.+.++||.+|++..+.++++.++.++..+..+..++|+.+..++....+.+..|+.+|+|+|+- +. .-+++..++.
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 4678999999999999999999986544578999999999988888899999999999999953 21 1245557787
Q ss_pred EEEcCC
Q 011605 407 VVNYDK 412 (481)
Q Consensus 407 Vi~~~~ 412 (481)
||.-..
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 776443
No 128
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.49 E-value=0.73 Score=42.22 Aligned_cols=14 Identities=36% Similarity=0.321 Sum_probs=12.2
Q ss_pred CccEEEEechhHhh
Q 011605 197 HLCYLVVDETDRLL 210 (481)
Q Consensus 197 ~~~~iVvDE~H~l~ 210 (481)
...++++||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 57899999999885
No 129
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.73 E-value=0.38 Score=45.19 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+..+++.||+|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999998643
No 130
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.69 E-value=0.82 Score=43.20 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
..++++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999764
No 131
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.44 E-value=0.48 Score=43.10 Aligned_cols=18 Identities=17% Similarity=-0.123 Sum_probs=14.9
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
...++.||.|+|||..+.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 19 ISILINGEDLSYPREVSL 36 (305)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 458899999999997654
No 132
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.18 E-value=1.1 Score=43.64 Aligned_cols=75 Identities=15% Similarity=0.047 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccccccCCC
Q 011605 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400 (481)
Q Consensus 321 ~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~l~~Gvd 400 (481)
..+...++. .+.++++.|.+...++.+.+.|.+.+ +.+...... . .+..| .+.|+...+..|+.
T Consensus 372 ~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~---i~~~~~~~~-~---------~~~~g--~v~i~~g~L~~GF~ 435 (483)
T 3hjh_A 372 DALRKFLET-FDGPVVFSVESEGRREALGELLARIK---IAPQRIMRL-D---------EASDR--GRYLMIGAAEHGFV 435 (483)
T ss_dssp HHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGT---CCCEECSCG-G---------GCCTT--CEEEEESCCCSCEE
T ss_pred HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcC---CCceecCch-h---------hcCCC--cEEEEEcccccCcc
Confidence 444444433 25789999999999999999999876 443333211 1 12233 56677778899999
Q ss_pred CCCCcEEEEcC
Q 011605 401 VEGVNNVVNYD 411 (481)
Q Consensus 401 l~~~~~Vi~~~ 411 (481)
+|..+.+|+..
T Consensus 436 ~p~~klaVITE 446 (483)
T 3hjh_A 436 DTVRNLALICE 446 (483)
T ss_dssp ETTTTEEEEEH
T ss_pred cCCCCEEEEEc
Confidence 99888887754
No 133
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.08 E-value=0.97 Score=43.14 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=21.7
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
-+++.+++|+|||.++...+ ..+.. .+.+++++.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA-~~l~~---~G~kVllv~ 132 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLA-YFYKK---RGYKVGLVA 132 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHH-HHHHH---TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHH---cCCeEEEEe
Confidence 36789999999998765433 23332 234676664
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.89 E-value=0.5 Score=44.49 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
...+++.||+|+|||..+-
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3569999999999998653
No 135
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.46 E-value=4.6 Score=32.41 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=54.8
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.++||.++++..+..+.+.+... ++.+..++|+.+..+...... +......+|+|+|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~-----------------~f~~g~~~vlv~T 92 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMN-----------------EFKRGEYRYLVAT 92 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEC
Confidence 3458999999999998888877765 788999999887655543222 1222457899999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEech
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDET 206 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE~ 206 (481)
. . + ..++++..+++||.-+.
T Consensus 93 ~-~----~--~~Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 93 D-V----A--ARGIDIENISLVINYDL 112 (163)
T ss_dssp G-G----G--TTTCCCSCCSEEEESSC
T ss_pred C-h----h--hcCCchhcCCEEEEeCC
Confidence 2 1 2 24566777888876443
No 136
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.23 E-value=0.48 Score=51.32 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=66.3
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-ccc---CCCCCCCcE
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTR---GMDVEGVNN 406 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l~~---Gvdl~~~~~ 406 (481)
.+.++||.++++..+.++++.+++++..+..+..++|+++..++....+.+..|+.+|+|+|+- +.. -+++.++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 4678999999999999999999986655678999999999988999999999999999999953 211 145567888
Q ss_pred EEEcC
Q 011605 407 VVNYD 411 (481)
Q Consensus 407 Vi~~~ 411 (481)
||.-.
T Consensus 200 lViDE 204 (1104)
T 4ddu_A 200 VFVDD 204 (1104)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 87644
No 137
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.03 E-value=0.23 Score=46.14 Aligned_cols=49 Identities=18% Similarity=0.072 Sum_probs=30.9
Q ss_pred hHHhhhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 58 ~~~~~~~--~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
.++.++. .+..+.-+++.+++|+|||..++..+...... +.+++|+.-.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~----g~~vlyi~~E 98 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA----GGIAAFIDAE 98 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECC
Confidence 3455555 33445668999999999998765544333222 3467777643
No 138
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.02 E-value=1.4 Score=40.51 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
..++++.||+|+|||..+
T Consensus 55 ~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCCEEEECSTTSSHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 357999999999999854
No 139
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.01 E-value=1.2 Score=37.98 Aligned_cols=118 Identities=8% Similarity=0.156 Sum_probs=70.1
Q ss_pred CeEEEEecchhhHHHHHHHHhhcccc--ceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-c-----ccCCCCCCC
Q 011605 333 EKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVEGV 404 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l-----~~Gvdl~~~ 404 (481)
.++||.+++...+.++++.++++... +..+..++|+.+..+.. +.+.++..+|+|+|.- + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999999888776421 47788889988765443 3445567799999952 2 233567778
Q ss_pred cEEEEcCCCCC--hhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHH
Q 011605 405 NNVVNYDKPAY--IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453 (481)
Q Consensus 405 ~~Vi~~~~~~s--~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~ 453 (481)
+.+|.-....- ...+...+.+..+.-..+.-+++++..--....++++.
T Consensus 160 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 210 (220)
T 1t6n_A 160 KHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK 210 (220)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred CEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHH
Confidence 88776443211 11333333333333223344455554333334444443
No 140
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.80 E-value=1.1 Score=48.75 Aligned_cols=79 Identities=11% Similarity=0.246 Sum_probs=65.1
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhc-cccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc-ccccCCCCCCCcEEE
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~-~l~~Gvdl~~~~~Vi 408 (481)
.+.+++|.+++...+.+.++.+++. +..+..+..+++..+..++...++.+..|+.+|+|+|. .+...+.+.++..||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4568999999999999998888753 33457788999999999999999999999999999995 455567888888777
Q ss_pred E
Q 011605 409 N 409 (481)
Q Consensus 409 ~ 409 (481)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 5
No 141
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.64 E-value=0.8 Score=43.80 Aligned_cols=58 Identities=22% Similarity=0.083 Sum_probs=33.2
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc--ccHHHHHHHHHHHHHhccccCceEEEe
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLA 135 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 135 (481)
-+++.+++|+|||.++.-.+ ..+.. .+.+++++. |.+.-+ .+.+..++...++.+...
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~---~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~ 161 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQK---RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGN 161 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHT---TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECC
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHH---CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEec
Confidence 36789999999998765433 33332 234666665 333322 334555555556665443
No 142
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=89.25 E-value=0.55 Score=42.95 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.0
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
.++++.||+|+|||..+-
T Consensus 47 ~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 359999999999998653
No 143
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.68 E-value=3.1 Score=37.64 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=20.9
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
-+++.+++|+|||.++...+ ..+.. .+.+++++.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA-~~l~~---~g~kV~lv~ 139 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLA-KMFVD---EGKSVVLAA 139 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHH---TTCCEEEEE
T ss_pred EEEEEcCCCChHHHHHHHHH-HHHHh---cCCEEEEEc
Confidence 36789999999998754322 22222 233566654
No 144
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.68 E-value=0.48 Score=39.93 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=29.4
Q ss_pred HHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 011605 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 38 ~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~ 86 (481)
.|.+.|.-.|+ .+-.. ...+..++......+.+++.+|+|+|||..+
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 45566664453 44444 4444555554333345899999999999865
No 145
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.64 E-value=0.3 Score=45.65 Aligned_cols=49 Identities=16% Similarity=0.005 Sum_probs=31.1
Q ss_pred hHHhhhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 58 ~~~~~~~--~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
.++.++. .+..+.-+++.+++|+|||..++-.+...... +.+++|+..-
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~----g~~vlyi~~E 111 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA----GGTCAFIDAE 111 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC----CCeEEEEECC
Confidence 4556565 34445668899999999998765544433222 3367777644
No 146
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.63 E-value=0.75 Score=43.02 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=14.3
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
.+++.||+|+|||..+-
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998653
No 147
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=88.62 E-value=3.3 Score=36.15 Aligned_cols=118 Identities=15% Similarity=0.207 Sum_probs=70.7
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccc-cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-c------ccCCCCC
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M------TRGMDVE 402 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l------~~Gvdl~ 402 (481)
...++||.++++..+.++++.++.... .+..+..++|+.+..+....+ .+..+|+|+|.- + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 345799999999999999988877532 246778888888765443322 246799999942 2 1346777
Q ss_pred CCcEEEEcCCCC----ChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhc
Q 011605 403 GVNNVVNYDKPA----YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 403 ~~~~Vi~~~~~~----s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
.++.||.-.... +....+..+-+..+ ...-+++++..--..++++++...
T Consensus 186 ~~~~lViDEah~l~~~~~~~~l~~i~~~~~---~~~~~l~~SAT~~~~v~~~~~~~l 239 (249)
T 3ber_A 186 ALKYLVMDEADRILNMDFETEVDKILKVIP---RDRKTFLFSATMTKKVQKLQRAAL 239 (249)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHSSC---SSSEEEEEESSCCHHHHHHHHHHC
T ss_pred ccCEEEEcChhhhhccChHHHHHHHHHhCC---CCCeEEEEeccCCHHHHHHHHHHC
Confidence 888877644221 11111222222222 233455556555555666666553
No 148
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.24 E-value=0.31 Score=45.28 Aligned_cols=51 Identities=18% Similarity=-0.043 Sum_probs=30.6
Q ss_pred hHHhhhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHH
Q 011605 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 58 ~~~~~~~--~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (481)
.++.++. .+..|.-+++.+|+|+|||..++..+. .+.. .+.+++++.....
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~-~~~~---~gg~VlyId~E~s 100 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIA-EAQK---MGGVAAFIDAEHA 100 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHH-HHHH---TTCCEEEEESSCC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHH-HHHh---cCCeEEEEecccc
Confidence 3455554 233455588999999999986544333 2222 2346888865443
No 149
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=88.20 E-value=7.2 Score=31.28 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=53.5
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.++||.++++..+......+... ++.+..++|+.+..+....+. .......+|+|+|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~g~~~vlv~T 87 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMK-----------------EFRSGSSRILIST 87 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHH-----------------HHHcCCCEEEEEc
Confidence 3458999999999998888777765 788889999887655543222 1123456899999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEec
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE 205 (481)
. .+ ..++++..+++||.-+
T Consensus 88 ~-----~~--~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 88 D-----LL--ARGIDVQQVSLVINYD 106 (165)
T ss_dssp G-----GG--TTTCCCCSCSEEEESS
T ss_pred C-----hh--hcCCCcccCCEEEEeC
Confidence 3 12 2446677788877533
No 150
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.16 E-value=0.33 Score=38.55 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchhHHHh
Q 011605 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~ 86 (481)
.+.++++.|++|+|||..+
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 3678999999999999754
No 151
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.98 E-value=0.35 Score=43.85 Aligned_cols=45 Identities=11% Similarity=-0.099 Sum_probs=29.9
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 67 ~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
..| -+++.+|+|+|||..++-.+......+ .+.+++|+..-..+.
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g--~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQY--PDAVCLFYDSEFGIT 71 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHC--TTCEEEEEESSCCCC
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcC--CCceEEEEeccchhh
Confidence 345 578999999999987765554443331 244788887655543
No 152
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=87.62 E-value=7 Score=33.00 Aligned_cols=75 Identities=23% Similarity=0.197 Sum_probs=53.4
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCc
Q 011605 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~ 180 (481)
+.++||.++++.-++...+.+... ++.+..++|+.+.......+. .......+|+|+|.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~-----------------~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLG-----------------AFRQGEVRVLVATD 89 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHH-----------------HHHSSSCCEEEECT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHH-----------------HHHCCCCeEEEecC
Confidence 458999999999998888777765 888999999987665543322 12234578999993
Q ss_pred hHHHHHHhcCCCcccCCccEEEE
Q 011605 181 GRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVv 203 (481)
.. ..++++..+++||.
T Consensus 90 -----~~--~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 90 -----VA--ARGLDIPQVDLVVH 105 (212)
T ss_dssp -----TT--TCSSSCCCBSEEEE
T ss_pred -----hh--hcCCCCccCcEEEE
Confidence 12 24566778888774
No 153
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.49 E-value=0.44 Score=54.20 Aligned_cols=52 Identities=19% Similarity=0.109 Sum_probs=34.8
Q ss_pred HHhhhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHH
Q 011605 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 59 ~~~~~~--~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (481)
++.++. .+..++++++.+|+|+|||..+...+..... .+.+++|+.....+.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~----~G~~v~Fi~~e~~~~ 1468 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEHALD 1468 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT----TTCCEEEECTTSCCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEEEcccccC
Confidence 455554 2345778999999999999887655444333 344788887664443
No 154
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=87.35 E-value=6.6 Score=31.88 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=53.4
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.++||.++++..+..+...+... ++.+..++|+.+..+...... .......+|+|+|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~-----------------~f~~g~~~vLvaT 91 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQ-----------------RFRDGKEKVLITT 91 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHH-----------------HHHTTSCSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEe
Confidence 3458999999999998877777664 788999999987665543322 1223457899999
Q ss_pred chHHHHHHhcCCCcccCCccEEEE
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVv 203 (481)
.- + ..++++..+++||.
T Consensus 92 ~~-----~--~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 92 NV-----C--ARGIDVKQVTIVVN 108 (175)
T ss_dssp CS-----C--CTTTCCTTEEEEEE
T ss_pred cc-----h--hcCCCcccCCEEEE
Confidence 31 1 24567777888884
No 155
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=87.30 E-value=3.9 Score=33.77 Aligned_cols=77 Identities=23% Similarity=0.191 Sum_probs=44.7
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.++||.++++.-+..+...+... ++.+..++|+.+..+....+ .+......+|+|+|
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~-----------------~~f~~g~~~vLvaT 103 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEAL-----------------HQFRSGKSPILVAT 103 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHH-----------------HHHHHTSSSEEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHH-----------------HHHHcCCCeEEEEc
Confidence 4568999999999998888777765 78888889877654432211 11223457899999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEe
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVD 204 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvD 204 (481)
. .+ ..++++..+++||.=
T Consensus 104 ~-~~------~~Gldi~~~~~VI~~ 121 (185)
T 2jgn_A 104 A-VA------ARGLDISNVKHVINF 121 (185)
T ss_dssp C-------------CCCSBSEEEES
T ss_pred C-hh------hcCCCcccCCEEEEe
Confidence 3 22 234566678877753
No 156
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.00 E-value=9.3 Score=30.93 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=54.6
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.++||.++++..+..+...+... ++.+..++|+.+..+....+. .......+|+|+|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~-----------------~f~~g~~~vLvaT 88 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQ-----------------QFKDFQRRILVAT 88 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEES
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHH-----------------HHHCCCCcEEEEC
Confidence 3458999999999998888877765 788899999887655533222 1223457899999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEech
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDET 206 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE~ 206 (481)
.- + ..++++..+++||.-+.
T Consensus 89 ~~-----~--~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 89 NL-----F--GRGMDIERVNIAFNYDM 108 (172)
T ss_dssp SC-----C--STTCCGGGCSEEEESSC
T ss_pred Cc-----h--hcCcchhhCCEEEEECC
Confidence 32 1 24566777888776443
No 157
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=86.64 E-value=5.5 Score=33.04 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=53.5
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCc
Q 011605 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~ 180 (481)
+.++||.++++.-+..+...+... ++.+..++|+.+..+....+. +......+|+|+|.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~-----------------~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIE-----------------AFREGKKDVLVATD 112 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHH-----------------HHHHTSCSEEEECH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHhcCCCEEEEEcC
Confidence 347999999999999888877765 788999999887655543322 12234578999992
Q ss_pred hHHHHHHhcCCCcccCCccEEEEec
Q 011605 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVvDE 205 (481)
.+. .++++..+++||.=+
T Consensus 113 -----~~~--~Gldi~~v~~VI~~d 130 (191)
T 2p6n_A 113 -----VAS--KGLDFPAIQHVINYD 130 (191)
T ss_dssp -----HHH--TTCCCCCCSEEEESS
T ss_pred -----chh--cCCCcccCCEEEEeC
Confidence 222 346677788777633
No 158
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=86.01 E-value=3.8 Score=34.26 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=68.6
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-----cc-cCCCCCCCc
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MT-RGMDVEGVN 405 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-----l~-~Gvdl~~~~ 405 (481)
+.++||.++++..+.++++.++..... ..+..++|+.+..+....+. ...+|+|+|.. +. ..+++..++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPH-LKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTT-SCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhc-ceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 568999999999999999999877432 56677777776544333322 25789999952 12 235677788
Q ss_pred EEEEcCCCCCh-hHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhc
Q 011605 406 NVVNYDKPAYI-KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 406 ~Vi~~~~~~s~-~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
.||.-....-. ..|...+.+..+.-..+.-+++++..--+...++.+...
T Consensus 147 ~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 197 (207)
T 2gxq_A 147 VAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYM 197 (207)
T ss_dssp EEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHC
T ss_pred EEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHc
Confidence 87764322100 011111222222222334455666555555666666553
No 159
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.62 E-value=0.74 Score=40.16 Aligned_cols=60 Identities=20% Similarity=0.074 Sum_probs=34.2
Q ss_pred HhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHH
Q 011605 60 QETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 60 ~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
+.++. .+..|.-+++.|++|+|||..++-.+...+... +.+++|++-.. -..+..+.+..
T Consensus 20 D~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~---~~~v~~~s~E~-~~~~~~~~~~~ 80 (251)
T 2zts_A 20 DELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLEE-RARDLRREMAS 80 (251)
T ss_dssp GGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESSS-CHHHHHHHHHT
T ss_pred HHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCCceeecccC-CHHHHHHHHHH
Confidence 34443 233456689999999999987655444433332 22577776332 23444444443
No 160
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.41 E-value=0.29 Score=38.74 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=15.1
Q ss_pred CCCEEEECCCCchhHHH
Q 011605 69 ERDLCINSPTGSGKTLS 85 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~ 85 (481)
+.++++.|++|+|||..
T Consensus 27 ~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETV 43 (143)
T ss_dssp SSCEEEEEETTCCHHHH
T ss_pred CCcEEEECCCCccHHHH
Confidence 57899999999999974
No 161
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=85.40 E-value=1.1 Score=38.45 Aligned_cols=47 Identities=15% Similarity=0.000 Sum_probs=28.1
Q ss_pred hHHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 58 ~~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
.++.++. .+..|.-+++.+|+|+|||..+...+.. +... +.+++++.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~-~~~~---~~~v~~~~ 58 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK-GLRD---GDPCIYVT 58 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH-HHHH---TCCEEEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH-HHHC---CCeEEEEE
Confidence 3445553 4445677889999999999765433322 2222 22576665
No 162
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.28 E-value=0.77 Score=41.80 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+.++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999998654
No 163
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=85.03 E-value=2.3 Score=36.47 Aligned_cols=77 Identities=8% Similarity=0.150 Sum_probs=50.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-c-----ccCCCCCCC
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVEGV 404 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l-----~~Gvdl~~~ 404 (481)
.+.++||.++++..+.++++.++.+...+..+..++|+.+..++... +. ...+|+|+|.- + ...+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 35679999999999999999998876556777888887765433322 22 34789999942 2 124567778
Q ss_pred cEEEEcC
Q 011605 405 NNVVNYD 411 (481)
Q Consensus 405 ~~Vi~~~ 411 (481)
+.||.-.
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8877643
No 164
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=84.01 E-value=10 Score=27.44 Aligned_cols=123 Identities=18% Similarity=0.268 Sum_probs=76.5
Q ss_pred EEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc--cccCC-----CCCCCcEE
Q 011605 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA--MTRGM-----DVEGVNNV 407 (481)
Q Consensus 335 ~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~--l~~Gv-----dl~~~~~V 407 (481)
.+||.+...-..++.+.++.-| ..+.++.+..+.+.|.+.++.|.+...++--.-+. +.+.+ -.|.+++|
T Consensus 5 fvvfssdpeilkeivreikrqg---vrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvv 81 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG---VRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVV 81 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT---CEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCC---eEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEE
Confidence 5677887778888888888766 88888999999999999999997654333221111 11111 24677777
Q ss_pred EEcCCCCC--hhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcCCCCCCCCCC
Q 011605 408 VNYDKPAY--IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIP 465 (481)
Q Consensus 408 i~~~~~~s--~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (481)
++...... ...|+.-+- - +.-.+++++...+..+-+..-......+.+...++
T Consensus 82 vivttddkewikdfieeak---e--rgvevfvvynnkdddrrkeaqqefrsdgvdvrtvs 136 (162)
T 2l82_A 82 VIVTTDDKEWIKDFIEEAK---E--RGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVS 136 (162)
T ss_dssp EEEECCCHHHHHHHHHHHH---H--TTCEEEEEEECSCHHHHHHHHHHHCCSSCEEEEES
T ss_pred EEEecCcHHHHHHHHHHHH---h--cCcEEEEEecCCCchhHHHHHHHhhhcCceeeecC
Confidence 76654321 334443321 1 12456777777777666666666666666655554
No 165
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=83.65 E-value=2.4 Score=42.49 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=52.4
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHH--hcCCceEEEEcc
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF--REGKIQVLVSSD 393 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~iLv~t~ 393 (481)
.+.+||.++++..+.+.++.|...+ ..+..++|+.+..++..+...+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG---ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT---CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5799999999999999999999876 8899999999998888888887 467899999996
No 166
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.64 E-value=1.4 Score=36.15 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
..++++.||+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4678999999999998653
No 167
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=83.59 E-value=4.8 Score=33.60 Aligned_cols=119 Identities=9% Similarity=0.112 Sum_probs=66.7
Q ss_pred CCeEEEEecchhhHHHHHHHHhhcccc--ceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-c----cc-CCCCCC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M----TR-GMDVEG 403 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l----~~-Gvdl~~ 403 (481)
..++||.+++...+.++++.+.+.... +..+..++|+.+..+... .+ .+..+|+|+|.- + .. ..++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999999888765421 467788888877543322 22 346789999952 2 22 246667
Q ss_pred CcEEEEcCCCC-ChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHh
Q 011605 404 VNNVVNYDKPA-YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (481)
Q Consensus 404 ~~~Vi~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (481)
++.+|.-.... ....|...+.+..+.-....-+++++..--+...++++..
T Consensus 147 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 198 (206)
T 1vec_A 147 VQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSH 198 (206)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred CCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHH
Confidence 78777633210 0001222222221111123345555655445555655544
No 168
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.46 E-value=1.2 Score=40.47 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+.++++.||+|+|||..+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4569999999999998654
No 169
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.35 E-value=2.3 Score=41.88 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=53.1
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~ 393 (481)
.+++||.++++..+.+..+.++..+ ..+..++++.+..++......+..|..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG---VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 5789999999999999999998876 7888999999998888888999999999999984
No 170
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=83.33 E-value=1.7 Score=37.45 Aligned_cols=74 Identities=11% Similarity=0.162 Sum_probs=52.8
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccc--cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-c-----ccCCCCCC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVEG 403 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l-----~~Gvdl~~ 403 (481)
+.++||.++++..+.++++.++.++. .+..+..++|+.+..++...+ ...+|+|+|.- + ...+++..
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 46899999999999999999887642 246788888988765544332 35789999953 2 12356667
Q ss_pred CcEEEEc
Q 011605 404 VNNVVNY 410 (481)
Q Consensus 404 ~~~Vi~~ 410 (481)
++.+|.-
T Consensus 167 ~~~lViD 173 (230)
T 2oxc_A 167 IRLFILD 173 (230)
T ss_dssp CCEEEES
T ss_pred CCEEEeC
Confidence 7777753
No 171
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=83.27 E-value=2 Score=37.93 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=29.6
Q ss_pred HHHHHHHHCCCCccchhhHHh-HHhhhCCCCC-CCCEEEECCCCchhHHHhH
Q 011605 38 RLKVALQNMGISSLFPVQVAV-WQETIGPGLF-ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 38 ~l~~~~~~~~~~~~~~~Q~~~-~~~~~~~~~~-~~~~l~~~~tG~GKT~~~~ 87 (481)
.+.+.|+-.|+. +.+... +..++..... .+.+++.||+|+|||..+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 567777777763 333222 3444543312 2348999999999998764
No 172
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=82.95 E-value=1.7 Score=47.66 Aligned_cols=48 Identities=21% Similarity=0.176 Sum_probs=33.4
Q ss_pred EEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHH
Q 011605 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 73 l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 122 (481)
+|.|+.|||||.+.+--+...+..+ ..+.++++++|...... +.+.+.
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~-~~~~~il~lVP~q~TFt-~~~rl~ 52 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA-PFGKPIIFLVPDQMTFL-MEYELA 52 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC-TTSSCEEEECCGGGHHH-HHHHHT
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEecCcccHH-HHHHHH
Confidence 7899999999998766566555553 34468999999875443 333333
No 173
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=82.94 E-value=1.3 Score=37.78 Aligned_cols=44 Identities=16% Similarity=-0.061 Sum_probs=28.4
Q ss_pred hHHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 58 ~~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
.++.++. .+..|.-+++.+++|+|||..+...+. .. +.+++++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~----~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LS----GKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HH----CSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---Hc----CCcEEEEE
Confidence 4455564 455566789999999999986554333 22 23577765
No 174
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=82.75 E-value=5.4 Score=34.48 Aligned_cols=117 Identities=9% Similarity=0.114 Sum_probs=71.4
Q ss_pred CCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-----cc-cCCCCCCC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MT-RGMDVEGV 404 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-----l~-~Gvdl~~~ 404 (481)
+.++||.++++..+.++.+.++.+. ..+..+..++|+.+..+....+. + ..+|+|+|+- +. ..+++..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 5679999999999999988887652 22467888888887665544433 2 4789999952 22 23577788
Q ss_pred cEEEEcCCCC----C-hhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcC
Q 011605 405 NNVVNYDKPA----Y-IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (481)
Q Consensus 405 ~~Vi~~~~~~----s-~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (481)
+.+|.-.... + ...+.....+. ....-+++++..--+...++.+...+
T Consensus 178 ~~lViDEah~l~~~~~~~~~~~i~~~~----~~~~q~~~~SAT~~~~~~~~~~~~l~ 230 (242)
T 3fe2_A 178 TYLVLDEADRMLDMGFEPQIRKIVDQI----RPDRQTLMWSATWPKEVRQLAEDFLK 230 (242)
T ss_dssp CEEEETTHHHHHHTTCHHHHHHHHTTS----CSSCEEEEEESCCCHHHHHHHHHHCS
T ss_pred cEEEEeCHHHHhhhCcHHHHHHHHHhC----CccceEEEEEeecCHHHHHHHHHHCC
Confidence 8887644221 1 22222222222 22344566666655566666666543
No 175
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=82.24 E-value=1.2 Score=38.64 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=30.2
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHH
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 122 (481)
.|.-+++.|++|+|||..++..+...+.. +.+++++.-... ..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~----~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM----GEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT----TCCEEEEESSSC-HHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEccCC-HHHHHHHHH
Confidence 46668999999999998755433333322 336777764322 344444444
No 176
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=82.18 E-value=1.7 Score=39.70 Aligned_cols=62 Identities=8% Similarity=-0.235 Sum_probs=37.9
Q ss_pred HhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHH
Q 011605 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (481)
..++.++..+..|.-+++.|++|+|||..++-.+...... +.++++++-- .-..|+...+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~----g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT----TCEEEEEESS-SCHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc----CCeEEEEECC-CCHHHHHHHHHH
Confidence 3556777656666678999999999997655444433322 2367777643 223444444443
No 177
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=82.15 E-value=1.4 Score=35.12 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCchhHHHh
Q 011605 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~ 86 (481)
.++.+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999754
No 178
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.92 E-value=0.67 Score=43.64 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
.+++++.||+|+|||..+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 578999999999999754
No 179
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=81.83 E-value=0.87 Score=40.29 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCchhHHHh
Q 011605 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~ 86 (481)
.|.-+++.||||+|||...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 4667899999999999764
No 180
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=81.77 E-value=2.7 Score=36.36 Aligned_cols=118 Identities=9% Similarity=0.097 Sum_probs=63.4
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccc-cceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc-----cccc-CCCCCC
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVEG 403 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~-----~l~~-Gvdl~~ 403 (481)
.+.++||.++++..+.++++.++.++. .+..+...+|+.+.. ...+.+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 346899999999999999999887642 235566666665432 233445566789999993 2223 356667
Q ss_pred CcEEEEcCCC----CC-hhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhc
Q 011605 404 VNNVVNYDKP----AY-IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 404 ~~~Vi~~~~~----~s-~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
++.||.-... .+ ...+.....+. ....-+++++..--+...++++...
T Consensus 174 ~~~lViDEah~~~~~~~~~~l~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~l 226 (237)
T 3bor_A 174 IKMFVLDEADEMLSRGFKDQIYEIFQKL----NTSIQVVLLSATMPTDVLEVTKKFM 226 (237)
T ss_dssp CCEEEEESHHHHHHTTCHHHHHHHHHHS----CTTCEEEEECSSCCHHHHHHHHHHC
T ss_pred CcEEEECCchHhhccCcHHHHHHHHHhC----CCCCeEEEEEEecCHHHHHHHHHHC
Confidence 8877764322 11 11222222221 2234455566555555666666554
No 181
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=81.57 E-value=1.4 Score=36.19 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
...+++.||+|+|||..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4669999999999998643
No 182
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=81.49 E-value=2.2 Score=46.77 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=43.7
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHh--------ccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNR--------AVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~--------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (481)
...+|.|+.|||||.+...-++..+... +..-.++|+||=|++-+.++.+.+...+.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 4459999999999998766666666532 12334799999999999999998887653
No 183
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.20 E-value=0.74 Score=43.93 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
.+++++.||+|+|||..+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 577999999999999754
No 184
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=80.52 E-value=0.48 Score=43.65 Aligned_cols=32 Identities=19% Similarity=0.054 Sum_probs=21.2
Q ss_pred hHHhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 011605 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 55 Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~ 86 (481)
|.++...+...+..+.++++.||+|+|||..+
T Consensus 32 ~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 32 QKYMINRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp CHHHHHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 33343333333334778999999999999754
No 185
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=80.43 E-value=1.9 Score=38.08 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+.++++.|++|+|||..+
T Consensus 29 ~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIA 46 (265)
T ss_dssp CSCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 578999999999999754
No 186
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=80.16 E-value=1.9 Score=37.17 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+..+++.||+|+|||..+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999998643
No 187
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=80.05 E-value=15 Score=31.76 Aligned_cols=120 Identities=11% Similarity=0.123 Sum_probs=70.9
Q ss_pred CeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-cc-----cCCCCCCCc
Q 011605 333 EKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MT-----RGMDVEGVN 405 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l~-----~Gvdl~~~~ 405 (481)
.++||.++++..+.++++.++.+. ..+..+..++|+.+..+.... . ....+|+|+|.. +. ..+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 589999999999999998887754 234567777887765443322 2 346789999952 21 235677788
Q ss_pred EEEEcCCCC-----ChhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhcC
Q 011605 406 NVVNYDKPA-----YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (481)
Q Consensus 406 ~Vi~~~~~~-----s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 456 (481)
.+|.-.... ....+...+.+.......+.-+++++..--..+.++.+....
T Consensus 177 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~ 232 (253)
T 1wrb_A 177 YIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLY 232 (253)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCS
T ss_pred EEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcC
Confidence 877633221 122333333332222112344566666555566666666543
No 188
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=79.67 E-value=27 Score=34.46 Aligned_cols=83 Identities=14% Similarity=0.106 Sum_probs=57.7
Q ss_pred cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEe
Q 011605 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (481)
Q Consensus 99 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~ 178 (481)
..+.++||.++++.-+..+++.+...... ++.+..++|+....+....+. .......+|+|+
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~~~~-----------------~f~~g~~~vLva 398 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVK-----------------RFKKDESGILVC 398 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHH-----------------HHHHCSSEEEEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHHHH-----------------HHhcCCCCEEEE
Confidence 34568999999999999888888876443 678888999887665543222 122345789999
Q ss_pred CchHHHHHHhcCCCcccCCccEEEEech
Q 011605 179 TPGRLMDHINATRGFTLEHLCYLVVDET 206 (481)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iVvDE~ 206 (481)
|. .+ ..++++.++++||.-..
T Consensus 399 T~-----~~--~~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 399 TD-----VG--ARGMDFPNVHEVLQIGV 419 (563)
T ss_dssp CG-----GG--TSSCCCTTCCEEEEESC
T ss_pred cc-----hh--hcCCCcccCCEEEEECC
Confidence 94 22 24577888888875553
No 189
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=79.40 E-value=3.3 Score=40.58 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCchhHHHh
Q 011605 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~ 86 (481)
.+..+++.||||+|||...
T Consensus 259 ~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp TTCCEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999753
No 190
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=78.85 E-value=8.2 Score=35.93 Aligned_cols=77 Identities=8% Similarity=0.253 Sum_probs=55.1
Q ss_pred CCeEEEEecchhhHHHHHHHHhhcccc--ceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-c-----ccCCCCCC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVEG 403 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l-----~~Gvdl~~ 403 (481)
..++||.|++...+.++++.++++... +..+..++|+.+..+.. +.+..+..+|+|+|.- + ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHH---HHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999998888776321 47788889988765444 3345577899999942 2 23356777
Q ss_pred CcEEEEcC
Q 011605 404 VNNVVNYD 411 (481)
Q Consensus 404 ~~~Vi~~~ 411 (481)
++.||.-.
T Consensus 153 ~~~vViDE 160 (391)
T 1xti_A 153 IKHFILDE 160 (391)
T ss_dssp CSEEEECS
T ss_pred cCEEEEeC
Confidence 88877643
No 191
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=78.83 E-value=1.9 Score=41.42 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=30.2
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (481)
..++++.|+||+|||... ..++..+... +..++|+=|.-+...
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~~---g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLLR---GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHHT---TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHHC---CCcEEEEeCCCchhH
Confidence 568999999999999874 3344444432 346888888877654
No 192
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=78.63 E-value=17 Score=34.12 Aligned_cols=76 Identities=24% Similarity=0.209 Sum_probs=53.8
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.++||.++++..+..+.+.+... ++.+..++|+.+..+....+. .......+|+|+|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~-----------------~f~~g~~~vlvaT 333 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALH-----------------QFRSGKSPILVAT 333 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHHTSSCEEEEC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHH-----------------HHHcCCCCEEEEC
Confidence 4568999999999998888777765 788999999887665543322 1123457899999
Q ss_pred chHHHHHHhcCCCcccCCccEEEE
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVv 203 (481)
. .+. .++++..+++||.
T Consensus 334 ~-----~~~--~Gidip~v~~Vi~ 350 (417)
T 2i4i_A 334 A-----VAA--RGLDISNVKHVIN 350 (417)
T ss_dssp H-----HHH--TTSCCCCEEEEEE
T ss_pred C-----hhh--cCCCcccCCEEEE
Confidence 3 222 3466777888775
No 193
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=78.29 E-value=1.4 Score=40.31 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
..++++.||+|+|||..+
T Consensus 51 ~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCEEEEECSSSSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 456999999999999864
No 194
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=78.27 E-value=8.1 Score=33.87 Aligned_cols=76 Identities=13% Similarity=0.185 Sum_probs=52.3
Q ss_pred CCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc------cc-ccCCCCCC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD------AM-TRGMDVEG 403 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~------~l-~~Gvdl~~ 403 (481)
+.++||.++++..+.++++.+++.. ..+..+..+.|+....+... .+..+ .+|+|+|+ .. ..++++..
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 5679999999999999999988754 23456677777776544332 23333 78999994 11 12467778
Q ss_pred CcEEEEcC
Q 011605 404 VNNVVNYD 411 (481)
Q Consensus 404 ~~~Vi~~~ 411 (481)
++.||.-.
T Consensus 202 l~~lViDE 209 (262)
T 3ly5_A 202 LQCLVIDE 209 (262)
T ss_dssp CCEEEECS
T ss_pred CCEEEEcC
Confidence 88877643
No 195
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=78.16 E-value=17 Score=32.70 Aligned_cols=75 Identities=21% Similarity=0.194 Sum_probs=52.3
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCc
Q 011605 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~ 180 (481)
+.++||.|+++.-++.....+... ++.+..++|+.+.......+. .......+|+|+|.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~-----------------~f~~g~~~vLVaT~ 86 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMG-----------------AFRQGEVRVLVATD 86 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHH-----------------HHHHTSCCEEEECS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHH-----------------HhhcCCceEEEEec
Confidence 458999999999888777766654 888999999987665543322 12234578999993
Q ss_pred hHHHHHHhcCCCcccCCccEEEE
Q 011605 181 GRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVv 203 (481)
.. ..++++..+++||.
T Consensus 87 -----va--~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 87 -----VA--ARGLDIPQVDLVVH 102 (300)
T ss_dssp -----TT--TCSTTCCCCSEEEE
T ss_pred -----hh--hcCccccceeEEEE
Confidence 12 24567778888874
No 196
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=78.14 E-value=9.9 Score=32.52 Aligned_cols=119 Identities=11% Similarity=0.142 Sum_probs=67.4
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc-cc----cc--CCCCC
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----TR--GMDVE 402 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~-~l----~~--Gvdl~ 402 (481)
.+.++||.++++..+.++++.++..+ ..+..+..++|+.+..+....+ +..+|+|+|. .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 35689999999999999999988765 2346778888887654433322 4678999995 22 12 35666
Q ss_pred CCcEEEEcCCCCChh-HHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHh
Q 011605 403 GVNNVVNYDKPAYIK-TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (481)
Q Consensus 403 ~~~~Vi~~~~~~s~~-~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 454 (481)
.++.||.-....-.. .|...+.+..+.-..+.-+++++..-.+...++.+..
T Consensus 171 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp TCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred cccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 788777644221000 0111122222211223335555655455566666554
No 197
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.05 E-value=2.2 Score=40.26 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=27.9
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHH
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (481)
.+.++++.|+||+|||...-..+. .+.. .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~-~~~~---~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL-REYM---QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH-HHHT---TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH-HHHH---CCCEEEEEeCCcC
Confidence 367899999999999986544333 2222 3457888877654
No 198
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.04 E-value=1.2 Score=42.32 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
.+.+++.||+|+|||..+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 577999999999999854
No 199
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=78.01 E-value=2.6 Score=40.53 Aligned_cols=49 Identities=10% Similarity=-0.216 Sum_probs=33.1
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
.++.++..+..|.-+++.|++|+|||..++-.+...... +.+++|++--
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~----g~~vl~fSlE 234 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSLE 234 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT----TCEEEEECSS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc----CCEEEEEECC
Confidence 456667655556668999999999998765544443333 3468887643
No 200
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=77.67 E-value=24 Score=35.09 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=57.9
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.++||.++++.-+..+++.+...... ++.+..++|+.+..+...... .......+|+|+|
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~~~~-----------------~F~~g~~~vLVaT 348 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVK-----------------RFKKDESGILVCT 348 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHH-----------------HHHHCSSEEEEEC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHHHHH-----------------HhhcCCCeEEEEc
Confidence 4568999999999999888888876543 678888999887655533222 1223457899999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEechh
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE~H 207 (481)
. .+ ..++++.++++||.-..-
T Consensus 349 ~-----~~--~~GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 349 D-----VG--ARGMDFPNVHEVLQIGVP 369 (579)
T ss_dssp G-----GG--TSSCCCTTCCEEEEESCC
T ss_pred c-----hh--hcCCCcccCCEEEEcCCC
Confidence 4 22 245778888888865543
No 201
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=77.64 E-value=3.8 Score=36.97 Aligned_cols=117 Identities=12% Similarity=0.113 Sum_probs=66.2
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccc--cceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-c-----c-cCCCCC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----T-RGMDVE 402 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l-----~-~Gvdl~ 402 (481)
..++||.++++..+.++++.+..++. .+..+....++.+.... .....+|+|+|+- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 34799999999999999888877642 23556666655543211 1345689999953 2 1 246777
Q ss_pred CCcEEEEcCCCCCh--hHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhc
Q 011605 403 GVNNVVNYDKPAYI--KTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 403 ~~~~Vi~~~~~~s~--~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
.++++|.-....-. ..|....-+..+.-....-+++++..--....++.+...
T Consensus 235 ~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l 289 (300)
T 3fmo_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV 289 (300)
T ss_dssp GCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHS
T ss_pred hceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHC
Confidence 88888864422100 012222222222222234455666655556666666553
No 202
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=77.00 E-value=2.1 Score=41.37 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.6
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 011605 68 FERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~ 87 (481)
.++++++.||+|+|||..+-
T Consensus 62 ~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHH
Confidence 35679999999999998653
No 203
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=76.98 E-value=3 Score=34.82 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=28.4
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
...+++..++|.|||.+++..++..+..+ .+++++-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G----~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG----KNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT----CCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEEE
Confidence 45789999999999999887777766554 3788883
No 204
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=76.93 E-value=1.2 Score=41.65 Aligned_cols=18 Identities=44% Similarity=0.663 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
..++++.||+|+|||..+
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999865
No 205
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=76.74 E-value=1.3 Score=37.16 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.1
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+..+++.+|||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 556899999999999754
No 206
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=76.28 E-value=2.5 Score=41.67 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=28.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccH
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (481)
..++++.|.||+|||......++..+........+++++=|-.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 4689999999999998765544444444323344566665653
No 207
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=76.24 E-value=15 Score=37.35 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=57.8
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.++||.++|+..++.+...+... |+.+..++|+.+..+....+. .......+|+|+|
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~-----------------~f~~g~~~VLVaT 502 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIR-----------------DLRLGKYDVLVGI 502 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHH-----------------HHHHTSCSEEEES
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHH-----------------HHhcCCeEEEEec
Confidence 4558999999999998877777765 788888888876655533221 1112457899999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEechhHh
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE~H~l 209 (481)
. .+ ..++.+..+++||+-+++..
T Consensus 503 ~-----~l--~~GlDip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 503 N-----LL--REGLDIPEVSLVAILDADKE 525 (661)
T ss_dssp C-----CC--STTCCCTTEEEEEETTTTCC
T ss_pred c-----hh--hCCcccCCCCEEEEeCcccc
Confidence 4 12 24577888999999888643
No 208
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=76.22 E-value=2.6 Score=41.16 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=26.2
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
.+.++++.++||||||......+...+........+++++=|.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 3678999999999999865443443343322223344444444
No 209
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=76.01 E-value=0.56 Score=45.86 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=20.7
Q ss_pred HHhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 011605 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 56 ~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~ 86 (481)
.++...+......+.++++.||+|+|||..+
T Consensus 28 ~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 28 SHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3333333333334789999999999999743
No 210
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=76.00 E-value=2 Score=36.20 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=17.6
Q ss_pred CCCCCCCEEEECCCCchhHHHh
Q 011605 65 PGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 65 ~~~~~~~~l~~~~tG~GKT~~~ 86 (481)
.+..+.-+++.||+|+|||..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHH
Confidence 3456788999999999999854
No 211
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=75.61 E-value=1.8 Score=39.16 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCchhHHHh
Q 011605 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~ 86 (481)
.++.+++.||+|+|||..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 3567999999999999864
No 212
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=75.55 E-value=3.2 Score=38.48 Aligned_cols=49 Identities=18% Similarity=0.085 Sum_probs=31.5
Q ss_pred hHHhhhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 58 ~~~~~~~--~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
.++.++. .+..+.-+++.+++|+|||..++-.+...... +.+++|+...
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~----g~~vlyid~E 100 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE 100 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEeCC
Confidence 3555564 34445668999999999998775544433322 3368887653
No 213
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=75.36 E-value=3.6 Score=37.77 Aligned_cols=48 Identities=13% Similarity=-0.084 Sum_probs=31.8
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc
Q 011605 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (481)
.++.++..+..|.=+++.|++|+|||..++-.+..... .+.+++|+.-
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----~g~~Vl~fSl 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----DDRGVAVFSL 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----TTCEEEEEES
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEEeC
Confidence 45666665555666899999999999876544443333 2346777764
No 214
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.21 E-value=2.3 Score=40.46 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
.+.+++.||+|+|||..+
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999864
No 215
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=74.99 E-value=1.9 Score=38.45 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
..++++.||+|+|||..+
T Consensus 51 ~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CSEEEEESSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 567999999999999754
No 216
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=74.79 E-value=1.6 Score=39.98 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.3
Q ss_pred CCEEEECCCCchhHHHhHH
Q 011605 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~ 88 (481)
+-++|.||||+|||..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578999999999986543
No 217
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=74.70 E-value=2.4 Score=39.45 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
++.+++.||+|+|||..+-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4679999999999998653
No 218
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=74.64 E-value=1.8 Score=36.25 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
++.+++.|++|+|||..+-
T Consensus 25 ~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 5678999999999998653
No 219
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=74.55 E-value=2 Score=35.32 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=15.2
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
|+-+++.||+|+|||...
T Consensus 5 g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 566889999999999754
No 220
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=74.45 E-value=2.4 Score=40.29 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=20.8
Q ss_pred hhHHhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 011605 54 VQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 54 ~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~ 86 (481)
.+..++..++. ..+.-+++.||||+|||...
T Consensus 154 ~~~~~L~~l~~--~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 154 HNHDNFRRLIK--RPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHHHHT--SSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHHHH--hcCCeEEEECCCCCCHHHHH
Confidence 34455555542 23455789999999999753
No 221
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.38 E-value=2.4 Score=40.45 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
.+.+++.||+|+|||..+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 577999999999999864
No 222
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=74.13 E-value=2.1 Score=37.61 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
..++++.||+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 466999999999999764
No 223
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=74.01 E-value=3.5 Score=35.31 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=17.6
Q ss_pred CEEEECCCCchhHHHhHHHHHHH
Q 011605 71 DLCINSPTGSGKTLSYALPIVQT 93 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~ 93 (481)
++++.++.|+|||..++-.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 48899999999999865544443
No 224
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=73.50 E-value=2 Score=35.40 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
.+.+++.|++|+|||..+-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4578999999999998654
No 225
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=73.47 E-value=1.4 Score=40.76 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=22.9
Q ss_pred chhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 011605 52 FPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 52 ~~~Q~~~~~~~----~~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
..-|.+.|... +..+..|.+ ++..|.||+|||++.
T Consensus 58 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 58 SCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp TCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 34566655532 233445766 677999999999874
No 226
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=73.12 E-value=7.4 Score=34.82 Aligned_cols=49 Identities=8% Similarity=-0.057 Sum_probs=30.4
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc
Q 011605 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (481)
++..+...+..|.-+++.|++|+|||..+... ...+... .+.+++++..
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~i-a~~~~~~--~G~~v~~~~~ 72 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQ-ALQWGTA--MGKKVGLAML 72 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHH-HHHHHHT--SCCCEEEEES
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHH-HHHHHHH--cCCeEEEEeC
Confidence 45666655656777899999999999865432 2222222 2335766653
No 227
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=73.02 E-value=2.8 Score=34.29 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+..+++.|++|+|||..+-
T Consensus 11 ~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCEEEECSTTSSHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHH
Confidence 5679999999999998643
No 228
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=72.77 E-value=3.5 Score=35.74 Aligned_cols=23 Identities=26% Similarity=0.109 Sum_probs=17.8
Q ss_pred CCCCCCEEEECCCCchhHHHhHH
Q 011605 66 GLFERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 66 ~~~~~~~l~~~~tG~GKT~~~~~ 88 (481)
+..|.-+.+.+|+|+|||.....
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH
Confidence 33467789999999999986543
No 229
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=72.70 E-value=2.4 Score=38.37 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
..++++.|++|+|||..+
T Consensus 25 ~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TSCEEEESCTTSCHHHHH
T ss_pred CCcEEEECCCCchHHHHH
Confidence 567999999999999754
No 230
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=72.69 E-value=6 Score=42.68 Aligned_cols=79 Identities=9% Similarity=0.265 Sum_probs=58.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhcc-ccce----eEEEcccccChHHHHHHHHHHhcCCceEEEEccc-cccCC-CCCC
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRI----KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGM-DVEG 403 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l~~Gv-dl~~ 403 (481)
.+.++||.++++..+.++++.++.+. ..+. .+..++|+.+..++....+.+.+ .+|+|+|+- +..-+ .+..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 35789999999999999999988754 2335 78899999998887777777766 899999952 22222 2557
Q ss_pred CcEEEEcC
Q 011605 404 VNNVVNYD 411 (481)
Q Consensus 404 ~~~Vi~~~ 411 (481)
+++||.-.
T Consensus 176 l~~lViDE 183 (1054)
T 1gku_B 176 FDFIFVDD 183 (1054)
T ss_dssp CSEEEESC
T ss_pred CCEEEEeC
Confidence 77777643
No 231
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=72.56 E-value=2 Score=38.60 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
...+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 567999999999999854
No 232
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=72.55 E-value=2.2 Score=35.73 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=14.9
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
++-+.+.||+|+|||...
T Consensus 4 g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp -CCEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 667899999999999754
No 233
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=72.37 E-value=3.6 Score=37.21 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=14.9
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
.++++.||+|+|||..+.
T Consensus 39 ~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CCEEEESSSSSSHHHHHH
T ss_pred CeEEEECcCCcCHHHHHH
Confidence 359999999999997643
No 234
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=72.36 E-value=5.2 Score=33.94 Aligned_cols=116 Identities=9% Similarity=0.098 Sum_probs=63.6
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-c-----ccCCCCCC
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----TRGMDVEG 403 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l-----~~Gvdl~~ 403 (481)
...++||.+++...+.++++.+.... ..+..+..++|+.+..+... .+. +.+|+|+|.. + ....++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 34589999999999999998887754 23467778888776543332 222 3789999952 1 23456667
Q ss_pred CcEEEEcCCC----CC-hhHHHHHhhhcccCCCCccEEEEeecchHHHHHHHHHHhc
Q 011605 404 VNNVVNYDKP----AY-IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 404 ~~~Vi~~~~~----~s-~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
++.||.-... .+ ...+.....+. ....-+++++..--+...++++...
T Consensus 156 ~~~iViDEah~~~~~~~~~~l~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~ 208 (224)
T 1qde_A 156 IKMFILDEADEMLSSGFKEQIYQIFTLL----PPTTQVVLLSATMPNDVLEVTTKFM 208 (224)
T ss_dssp CCEEEEETHHHHHHTTCHHHHHHHHHHS----CTTCEEEEEESSCCHHHHHHHHHHC
T ss_pred CcEEEEcChhHHhhhhhHHHHHHHHHhC----CccCeEEEEEeecCHHHHHHHHHHC
Confidence 7877764322 11 12222222222 1233455556555555666666553
No 235
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=72.35 E-value=2.5 Score=34.22 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+..+++.|++|+|||..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999854
No 236
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=72.27 E-value=2 Score=38.89 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=14.0
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
-+++.||||+|||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 36789999999998654
No 237
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=72.16 E-value=2.3 Score=38.30 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
..++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999764
No 238
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=72.07 E-value=1.9 Score=38.24 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
..++++.||+|+|||..+-
T Consensus 64 ~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3569999999999998653
No 239
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=72.06 E-value=0.94 Score=41.72 Aligned_cols=36 Identities=25% Similarity=0.143 Sum_probs=23.2
Q ss_pred cchhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 011605 51 LFPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 51 ~~~~Q~~~~~~~~----~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
+..-|.+.|..+. ..+..|.| ++..|.||+|||++.
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3345666655532 22334666 678999999999873
No 240
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=71.92 E-value=1.9 Score=36.23 Aligned_cols=17 Identities=41% Similarity=0.493 Sum_probs=14.1
Q ss_pred EEEECCCCchhHHHhHH
Q 011605 72 LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~ 88 (481)
.++.|++|+|||..+..
T Consensus 8 ~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 57999999999986543
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=71.92 E-value=1.8 Score=35.78 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCchhHHHh
Q 011605 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~ 86 (481)
.|.-+++.|++|+|||..+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4566889999999999753
No 242
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=71.82 E-value=5.4 Score=38.31 Aligned_cols=50 Identities=12% Similarity=-0.126 Sum_probs=32.2
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
.++.++..+..|.-+++.|++|+|||..++-.+...... .+.+++++..-
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g~~vl~~slE 238 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EGVGVGIYSLE 238 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCCCEEEEESS
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEECC
Confidence 456666555556668999999999998665444433322 13368877643
No 243
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=71.81 E-value=1.6 Score=40.78 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=24.9
Q ss_pred cchhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 011605 51 LFPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 51 ~~~~Q~~~~~~~~----~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
+..-|.+.|..+. ..+..|.| ++..|.||+|||++.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 4456777776533 33345766 667999999999874
No 244
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=71.77 E-value=5.6 Score=38.31 Aligned_cols=50 Identities=6% Similarity=-0.142 Sum_probs=32.7
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
.++.++..+..|.-+++.|++|+|||..++..+...... .+.+++|+..-
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g~~Vl~~s~E 241 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TNENVAIFSLE 241 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SSCCEEEEESS
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEEECC
Confidence 556667656666778999999999998765444333222 13368887643
No 245
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=71.67 E-value=2.1 Score=39.21 Aligned_cols=18 Identities=28% Similarity=0.459 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
.+.+++.||+|+|||..+
T Consensus 45 ~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 467999999999999754
No 246
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=71.63 E-value=1.3 Score=40.84 Aligned_cols=36 Identities=28% Similarity=0.189 Sum_probs=23.3
Q ss_pred cchhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 011605 51 LFPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 51 ~~~~Q~~~~~~~~----~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
+..-|.+.|..+. ..+..|.| ++..|.||+|||++.
T Consensus 60 ~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 60 EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445666655432 23334766 677999999999874
No 247
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=71.59 E-value=2.1 Score=38.64 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=14.0
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
-+++.||||+|||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 36789999999998654
No 248
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=71.56 E-value=25 Score=35.60 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=56.3
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.++||.|+|+..++.+...+... |+.+..++|+.+..+....+. .......+|+|+|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~-----------------~f~~g~~~VLvaT 496 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIR-----------------DLRLGHYDCLVGI 496 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHH-----------------HHHTTSCSEEEES
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHH-----------------HhhcCCceEEEcc
Confidence 3458999999999998887777765 788888888776555533221 1122457899998
Q ss_pred chHHHHHHhcCCCcccCCccEEEEechhH
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE~H~ 208 (481)
.- + ..++++..+++||+=+++.
T Consensus 497 ~~-----l--~~GlDip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 497 NL-----L--REGLDIPEVSLVAILDADK 518 (664)
T ss_dssp CC-----C--CTTCCCTTEEEEEETTTTS
T ss_pred Ch-----h--hcCccCCCCCEEEEeCCcc
Confidence 31 1 2457777889888877754
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=71.38 E-value=2.4 Score=35.82 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.0
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+.-+++.||+|+|||...
T Consensus 8 g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECcCCCCHHHHH
Confidence 555789999999999854
No 250
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=71.22 E-value=1.7 Score=35.15 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=13.1
Q ss_pred EEEECCCCchhHHHh
Q 011605 72 LCINSPTGSGKTLSY 86 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~ 86 (481)
+++.|++|+|||..+
T Consensus 4 I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 4 ILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999854
No 251
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=71.06 E-value=32 Score=32.01 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=54.0
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.++||.++++.-+..+++.+... +..+..++|+.+..+....+. .......+|+|+|
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~g~~~vlv~T 323 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIE-----------------RFREGKEKVLVTT 323 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHH-----------------HHHCCCCcEEEEc
Confidence 3458999999999999888888776 778889999887665543322 1223457899999
Q ss_pred chHHHHHHhcCCCcccCCccEEEE
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVv 203 (481)
. .+ ..++++.++++||.
T Consensus 324 ~-----~~--~~Gidip~~~~Vi~ 340 (412)
T 3fht_A 324 N-----VC--ARGIDVEQVSVVIN 340 (412)
T ss_dssp G-----GG--TSSCCCTTEEEEEE
T ss_pred C-----cc--ccCCCccCCCEEEE
Confidence 3 22 24577778888874
No 252
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=71.02 E-value=2.9 Score=34.42 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+..+++.|++|+|||.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 10 GINILITGTPGTGKTSMA 27 (184)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567899999999999864
No 253
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=71.02 E-value=2.2 Score=38.40 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.7
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
..+++.||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999998643
No 254
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=71.00 E-value=2.7 Score=36.05 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.4
Q ss_pred CCEEEECCCCchhHHHh
Q 011605 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~ 86 (481)
..+++.||+|+|||..+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35899999999999764
No 255
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=70.82 E-value=3.9 Score=40.07 Aligned_cols=60 Identities=5% Similarity=-0.126 Sum_probs=35.6
Q ss_pred hHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHH
Q 011605 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (481)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (481)
.++.++..+..|.-+++.|++|+|||..++-.+...... .+.+++++.--.. ..|+...+
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~---~g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---MGKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---SCCCEEEEESSSC-HHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh---cCCcEEEEeccCC-HHHHHHHH
Confidence 345556555556668999999999998765444433222 1346887764322 33444443
No 256
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=70.77 E-value=4.6 Score=48.37 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~ 87 (481)
|...+.+.+.++|+ .+.+.+..-+-++.+.+.....+.++||||+|||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 45667777778888 67777766555555555556779999999999998754
No 257
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=70.69 E-value=2.3 Score=37.24 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=15.2
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
..++++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356999999999999754
No 258
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=70.52 E-value=3.7 Score=46.23 Aligned_cols=50 Identities=18% Similarity=0.068 Sum_probs=34.5
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
+|+-+.+.+|.|+|||..++-.+.+.. ..+..++++.+-.+|-... ++++
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~----~~g~~~~~i~~e~~~~~~~---~~~~ 1479 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQ----REGKTCAFIDAEHALDPIY---ARKL 1479 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH----HTTCCEEEECTTSCCCHHH---HHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH----hcCCeEEEEecCCCCCHHH---HHHc
Confidence 455688999999999987655444332 2345799998877776543 4444
No 259
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=70.48 E-value=19 Score=34.34 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=54.1
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc-cccc-----CCCCCC
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTR-----GMDVEG 403 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~-~l~~-----Gvdl~~ 403 (481)
...++||.|++...+.+.++.+.++. .....+..++|+.+..++..... ..+|+|+|. .+.. .+....
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 57899999999999999999888763 23347888999988766554433 358999984 2221 355667
Q ss_pred CcEEEEcC
Q 011605 404 VNNVVNYD 411 (481)
Q Consensus 404 ~~~Vi~~~ 411 (481)
++.||.-.
T Consensus 126 ~~~vIiDE 133 (494)
T 1wp9_A 126 VSLIVFDE 133 (494)
T ss_dssp CSEEEEET
T ss_pred ceEEEEEC
Confidence 78777633
No 260
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=70.38 E-value=2.7 Score=35.13 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.1
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
|.-+.+.||+|+|||...
T Consensus 7 g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECcCCCCHHHHH
Confidence 556789999999999754
No 261
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=70.31 E-value=2.3 Score=37.25 Aligned_cols=16 Identities=44% Similarity=0.289 Sum_probs=13.5
Q ss_pred EEEECCCCchhHHHhH
Q 011605 72 LCINSPTGSGKTLSYA 87 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~ 87 (481)
+++.||||+|||..+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 5789999999998653
No 262
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.30 E-value=2.3 Score=40.74 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
.+++++.||+|+|||+.+
T Consensus 243 prGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSEEEECSCTTSSHHHHH
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 577999999999999754
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=70.02 E-value=2.2 Score=34.86 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.9
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+.-+++.|++|+|||.++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 445789999999999854
No 264
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=69.93 E-value=2.6 Score=39.09 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
..++++.||+|+|||..+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4679999999999998653
No 265
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=69.69 E-value=3.3 Score=48.93 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHCCCCccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHH
Q 011605 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 35 l~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~ 88 (481)
+...+.+.+.+.|+ .+.+.+..-+.++.+.+.....+++.||||+|||.++-.
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 55667778888887 566666443333333333367799999999999987543
No 266
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=69.51 E-value=23 Score=32.69 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=55.9
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.++||.++++.-+..+++.++.. +..+..++|+.+..+....+. .......+|+|+|
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~g~~~vlv~T 300 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLID-----------------DFREGRSKVLITT 300 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHH-----------------HHHTTSCCEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHH-----------------HHHCCCCCEEEEC
Confidence 3458999999999998888777765 778889999887665543322 1122456899999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEechh
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE~H 207 (481)
. .+ ..++++.++++||.-+.-
T Consensus 301 ~-----~~--~~Gidip~~~~Vi~~~~p 321 (395)
T 3pey_A 301 N-----VL--ARGIDIPTVSMVVNYDLP 321 (395)
T ss_dssp G-----GG--SSSCCCTTEEEEEESSCC
T ss_pred C-----hh--hcCCCcccCCEEEEcCCC
Confidence 3 22 245778888888865443
No 267
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=69.43 E-value=29 Score=32.94 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=52.8
Q ss_pred cEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCchH
Q 011605 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (481)
Q Consensus 103 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~~ 182 (481)
++||.++++.-+..+.+.+... ++.+..++|+....+....+. +.......|+|+|.
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~-----------------~F~~g~~~vLvaT~-- 358 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALR-----------------DFKNGSMKVLIATS-- 358 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHH-----------------HHHTSSCSEEEECG--
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHH-----------------HHHcCCCcEEEEch--
Confidence 5999999999998888777765 788999999987665543322 12234578999994
Q ss_pred HHHHHhcCCCcccCCccEEEE
Q 011605 183 LMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 183 l~~~l~~~~~~~~~~~~~iVv 203 (481)
.+ ..++++.++++||.
T Consensus 359 ---v~--~rGlDi~~v~~VI~ 374 (434)
T 2db3_A 359 ---VA--SRGLDIKNIKHVIN 374 (434)
T ss_dssp ---GG--TSSCCCTTCCEEEE
T ss_pred ---hh--hCCCCcccCCEEEE
Confidence 22 24577888888885
No 268
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=69.41 E-value=15 Score=35.70 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=22.5
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcc
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (481)
.+++++++|+|||.++...+ ..+.. .+.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA-~~l~~---~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA-YYYQR---KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHH---TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHh---CCCeEEEEec
Confidence 47789999999998765433 23332 2346777764
No 269
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=69.00 E-value=3.1 Score=34.85 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+.-+.+.||+|+|||..+
T Consensus 6 g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCEEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 566889999999999754
No 270
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=68.72 E-value=3 Score=39.00 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
..++++.||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 467999999999999864
No 271
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=68.56 E-value=3.8 Score=37.43 Aligned_cols=52 Identities=13% Similarity=-0.103 Sum_probs=29.5
Q ss_pred HHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHh--ccCCccEEEEccc
Q 011605 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPT 110 (481)
Q Consensus 59 ~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~--~~~~~~~lil~Pt 110 (481)
++.++. .+..|.-+++.|++|+|||..++..+....... ...+.+++|+.-.
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 455553 233455588999999999987654443322110 0013467777644
No 272
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=68.14 E-value=3.1 Score=38.53 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=22.6
Q ss_pred hhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 011605 54 VQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 54 ~Q~~~~~~~~----~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
-|.+.|..+. ..++.|.| ++..|.||+|||++.
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4666665543 23345766 677999999999874
No 273
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=67.87 E-value=52 Score=30.45 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=53.9
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.++||.++++.-+...++.+... +..+..++|+.+..+...... .......+|+|+|
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~g~~~vLv~T 315 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFH-----------------EFRQGKVRTLVCS 315 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSSSEEEES
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHH-----------------HHhcCCCcEEEEc
Confidence 3458999999999998888877766 788888999887655533222 1122456899999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEec
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE 205 (481)
. .+ ..++++..+++||.-+
T Consensus 316 ~-----~~--~~Gidip~~~~Vi~~~ 334 (400)
T 1s2m_A 316 D-----LL--TRGIDIQAVNVVINFD 334 (400)
T ss_dssp S-----CS--SSSCCCTTEEEEEESS
T ss_pred C-----cc--ccCCCccCCCEEEEeC
Confidence 3 11 2456777888877533
No 274
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=67.42 E-value=2.9 Score=38.08 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=14.8
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
..+++.||||+|||..+.
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 357899999999998654
No 275
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=67.34 E-value=2.9 Score=38.92 Aligned_cols=18 Identities=44% Similarity=0.613 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|..+++.||||+|||..
T Consensus 174 ~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTL 191 (361)
T ss_dssp TTCCEEEEESSSSCHHHH
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 478899999999999975
No 276
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=66.95 E-value=3.8 Score=41.02 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=13.9
Q ss_pred CEEEECCCCchhHHH
Q 011605 71 DLCINSPTGSGKTLS 85 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~ 85 (481)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 277
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=66.82 E-value=3.9 Score=35.26 Aligned_cols=32 Identities=9% Similarity=-0.179 Sum_probs=21.7
Q ss_pred HHhhhC-CCCCCCCEEEECCCCchhHHHhHHHH
Q 011605 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 59 ~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~ 90 (481)
++.++. .+..|.-+.+.+|+|+|||..+...+
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHH
Confidence 345553 23346668999999999998765433
No 278
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=66.73 E-value=3.2 Score=33.47 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=13.6
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
-+++.|++|+|||..+
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999864
No 279
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=66.55 E-value=4 Score=34.13 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.1
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
++-+++.||+|+|||...
T Consensus 19 g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCEEEEECcCCCCHHHHH
Confidence 566889999999999753
No 280
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=66.52 E-value=4 Score=37.21 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=22.6
Q ss_pred chhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 011605 52 FPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 52 ~~~Q~~~~~~~~----~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
..-|.+.|..+. ..+..|.| ++..|.||+|||++.
T Consensus 55 ~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344655554432 22334666 678999999999874
No 281
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=66.48 E-value=2 Score=39.79 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=23.8
Q ss_pred chhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 011605 52 FPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 52 ~~~Q~~~~~~~----~~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
..-|.+.|..+ +..+..|.| ++..|.||+|||++.
T Consensus 83 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 83 TSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 34566666543 334445766 677999999999873
No 282
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=66.45 E-value=2.2 Score=37.65 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
..++++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456899999999999864
No 283
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=66.43 E-value=4.2 Score=34.24 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=14.5
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+.-+.+.||+|+|||..+
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445789999999999753
No 284
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=66.33 E-value=2.9 Score=39.12 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCchhHHHh
Q 011605 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~ 86 (481)
.+..+++.||||+|||...
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566899999999999764
No 285
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=66.27 E-value=5.4 Score=35.86 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=22.4
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
++-+++.+++|+|||.++...+. .+... .+.+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~-~l~~~--~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA-ISMLE--KHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH-HHHHT--TCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-HHHHh--cCCEEEEEe
Confidence 44578899999999987544322 22221 233566664
No 286
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=66.19 E-value=3 Score=38.41 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=17.4
Q ss_pred CCCCCCCC--EEEECCCCchhHHHh
Q 011605 64 GPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 64 ~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
..+..|.| ++..|.||+|||++.
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 78 QSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp GGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHhcCCceeEEEEECCCCCCCcEec
Confidence 33445766 677999999999874
No 287
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=66.09 E-value=3.1 Score=34.49 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=13.5
Q ss_pred CCEEEECCCCchhHHH
Q 011605 70 RDLCINSPTGSGKTLS 85 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~ 85 (481)
+-+++.||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3478999999999974
No 288
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=66.09 E-value=4.1 Score=34.71 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCchhHHHh
Q 011605 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~ 86 (481)
.|+-+.+.||+|+|||...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999753
No 289
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.03 E-value=2.3 Score=39.24 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.5
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
++++.||+|+|||..+.
T Consensus 48 ~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp CEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 38999999999998654
No 290
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=65.92 E-value=45 Score=31.04 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=53.6
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCc
Q 011605 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~ 180 (481)
..++||.++++.-++.+.+.+... ++.+..++|+.+..+....+. .......+|+|+|.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~-----------------~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMK-----------------EFRSGASRVLISTD 334 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHH-----------------HHHHTSSCEEEECG
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHH-----------------HHHCCCCCEEEECC
Confidence 348999999999998888777765 778888999887655533222 11224568999994
Q ss_pred hHHHHHHhcCCCcccCCccEEEEec
Q 011605 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVvDE 205 (481)
.+ ..++++..+++||.-+
T Consensus 335 -----~~--~~Gidi~~v~~Vi~~~ 352 (410)
T 2j0s_A 335 -----VW--ARGLDVPQVSLIINYD 352 (410)
T ss_dssp -----GG--SSSCCCTTEEEEEESS
T ss_pred -----hh--hCcCCcccCCEEEEEC
Confidence 22 2457777888887533
No 291
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=65.61 E-value=3 Score=38.67 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=15.0
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+..+++.||||+|||...
T Consensus 123 ~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 446889999999999753
No 292
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=65.57 E-value=3.5 Score=38.28 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
...+++.||+|+|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999864
No 293
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=65.50 E-value=4.2 Score=35.48 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.4
Q ss_pred CCEEEECCCCchhHHHh
Q 011605 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~ 86 (481)
+++++.||+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 44999999999999754
No 294
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=65.29 E-value=3.6 Score=33.49 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.5
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
-+++.|++|+|||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3678999999999864
No 295
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=65.17 E-value=4.2 Score=33.53 Aligned_cols=16 Identities=31% Similarity=0.677 Sum_probs=13.4
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
-+.+.||+|+|||...
T Consensus 3 ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999753
No 296
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=65.02 E-value=3.9 Score=37.49 Aligned_cols=17 Identities=41% Similarity=0.364 Sum_probs=14.3
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
-++|.||||+|||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47799999999998654
No 297
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=64.99 E-value=2.5 Score=34.41 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=14.9
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
|.-+.+.||+|+|||..+
T Consensus 9 gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 555789999999999754
No 298
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=64.91 E-value=8.2 Score=36.09 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=22.6
Q ss_pred HhHHhhhCCCCCCCCEEEECCCCchhHHHhH
Q 011605 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~ 87 (481)
++++- +..+..|+.+.+.+|+|+|||....
T Consensus 163 raID~-~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 163 RVLDL-ASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHH-HSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred eeeee-eeeecCCcEEEEecCCCCChhHHHH
Confidence 34443 4556678999999999999998654
No 299
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=64.77 E-value=4.5 Score=37.29 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=23.5
Q ss_pred cchhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 011605 51 LFPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 51 ~~~~Q~~~~~~~~----~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
+..-|.+.|..+. ..+..|.| ++..|.||+|||++.
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3455666665432 23334666 677999999999873
No 300
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=64.75 E-value=5.7 Score=36.34 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.+..+++.+|||+|||..
T Consensus 170 ~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HTCCEEEEESTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478899999999999974
No 301
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=64.67 E-value=4.6 Score=36.91 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=15.4
Q ss_pred CCCC--EEEECCCCchhHHHh
Q 011605 68 FERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~--~l~~~~tG~GKT~~~ 86 (481)
.|.| ++..|.||+|||++.
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 78 DGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred CCCEEEEEeECCCCCCCcEEE
Confidence 3666 677999999999874
No 302
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=64.66 E-value=4.5 Score=37.53 Aligned_cols=36 Identities=25% Similarity=0.177 Sum_probs=23.3
Q ss_pred cchhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 011605 51 LFPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 51 ~~~~Q~~~~~~~~----~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
+..-|.+.|..+. ..+..|.| ++..|.||+|||++.
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445666655432 23334666 677999999999873
No 303
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=64.56 E-value=2.8 Score=34.44 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+..+++.|++|+|||..+-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567899999999998653
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=64.22 E-value=4.1 Score=34.01 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.2
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+.-+++.|++|+|||..+
T Consensus 29 g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 556889999999999854
No 305
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=64.05 E-value=3.9 Score=32.91 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.5
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
+++++.++.|||||.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999998653
No 306
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=63.75 E-value=4.7 Score=35.75 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.4
Q ss_pred CCEEEECCCCchhHHHh
Q 011605 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~ 86 (481)
+++++.||+|+|||..+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 44999999999999753
No 307
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=63.74 E-value=4.8 Score=37.41 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=22.0
Q ss_pred hhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 011605 53 PVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 53 ~~Q~~~~~~~~----~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
.-|.+.|..+. ..+..|.| ++..|.||+|||++.
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34665554432 22334666 677999999999873
No 308
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=63.64 E-value=4.9 Score=37.07 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=17.0
Q ss_pred CCCCCCC--EEEECCCCchhHHHh
Q 011605 65 PGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 65 ~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
.+..|.| ++..|.||+|||++.
T Consensus 80 ~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 80 SSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp GGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHCCcceeEEEeCCCCCCCceEe
Confidence 3445766 567999999999874
No 309
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=63.34 E-value=5 Score=37.85 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=15.5
Q ss_pred CCCC--EEEECCCCchhHHHh
Q 011605 68 FERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~--~l~~~~tG~GKT~~~ 86 (481)
.|.| ++..|.||+|||++.
T Consensus 138 ~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 138 DGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp TTCCEEEEEESCTTSSHHHHH
T ss_pred CCcceEEEEECCCCCCCceEe
Confidence 4766 677999999999874
No 310
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=63.27 E-value=4.4 Score=37.70 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=22.5
Q ss_pred chhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 011605 52 FPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 52 ~~~Q~~~~~~~~----~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
..-|.++|..+. ..++.|.| ++..|.||+|||++.
T Consensus 79 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 79 NAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp TCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 345655555432 22334666 677999999999873
No 311
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=63.16 E-value=5 Score=33.45 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+.-+++.|+.|+|||..+-
T Consensus 4 ~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 5568899999999998653
No 312
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=62.97 E-value=4.8 Score=33.09 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=23.1
Q ss_pred EEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHH
Q 011605 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 122 (481)
+++.|++|||||..+.- +... +.+++|+......-.++.+.+.
T Consensus 2 ilV~Gg~~SGKS~~A~~-----la~~---~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-----LIGD---APQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHHHH-----HHCS---CSSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHHHH-----HHhc---CCCeEEEecCCCCCHHHHHHHH
Confidence 57899999999975432 2221 3367787765443334444443
No 313
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=62.90 E-value=5.6 Score=35.88 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=22.0
Q ss_pred HhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 011605 57 AVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~ 86 (481)
.++..+--.+..|+-+.+.||+|+|||...
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHH
Confidence 345554445556778999999999999754
No 314
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=62.89 E-value=13 Score=30.43 Aligned_cols=58 Identities=5% Similarity=-0.048 Sum_probs=37.7
Q ss_pred hhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHH
Q 011605 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 53 ~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (481)
+.|..++..++.. ..+-.++.+.-|++|+...+..++.. .+ ..|.++.+++|+..-..
T Consensus 37 ~~~~~a~~~l~~s--~~~~~iv~g~ggs~~~~~~~a~L~~~-a~--~~Gr~V~vLAp~~~s~~ 94 (189)
T 2l8b_A 37 AGYSDAVSVLAQD--RPSLAIVSGQGGAAGQRERVAELVMM-AR--EQGREVQIIAADRRSQM 94 (189)
T ss_dssp HHHHHHHHHHHHH--SCCEECCBCSSCSHHHHHHHHHHHHH-HH--HTTCCEEEECSTTHHHH
T ss_pred ccchhHHHHHhcc--CCceEEEecccchHHHHHHHHHHHHH-HH--hcCeEEEEEcCchHHHH
Confidence 4567777766541 12336789999999998754433332 22 35668999999966544
No 315
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=62.87 E-value=53 Score=29.79 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=53.1
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeC
Q 011605 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T 179 (481)
.+.++||.++++.-+..+.+.++.. +..+..++|+.+..+...... .......+|+|+|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~~~~~vlv~T 295 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIR-----------------LFKQKKIRILIAT 295 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHH-----------------HHHTTSSSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEC
Confidence 4558999999999998888877765 788889999887655543222 1122456899999
Q ss_pred chHHHHHHhcCCCcccCCccEEEEec
Q 011605 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVvDE 205 (481)
. .+ . .++++.++++||.-.
T Consensus 296 ~-~~----~--~Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 296 D-VM----S--RGIDVNDLNCVINYH 314 (367)
T ss_dssp T-TH----H--HHCCCSCCSEEEESS
T ss_pred C-hh----h--cCCCcccCCEEEEec
Confidence 3 22 2 235566788887544
No 316
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=62.66 E-value=6.1 Score=35.34 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.7
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
-+++.||+|+|||..+
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 317
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=62.56 E-value=4.6 Score=37.22 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=21.8
Q ss_pred hhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 011605 53 PVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 53 ~~Q~~~~~~~~----~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
.-|.+.|..+. ..+..|.+ ++..|.||+|||++.
T Consensus 56 ~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 56 ETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp SCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34555554432 22334666 677999999999874
No 318
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=62.46 E-value=3.7 Score=37.02 Aligned_cols=17 Identities=35% Similarity=0.391 Sum_probs=14.7
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
.+++.||+|+|||..+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 58999999999998653
No 319
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=62.02 E-value=4.8 Score=34.33 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=15.6
Q ss_pred CCCCCEEEECCCCchhHHH
Q 011605 67 LFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 67 ~~~~~~l~~~~tG~GKT~~ 85 (481)
..|.-+++.||+|+|||..
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3467788999999999975
No 320
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=62.01 E-value=4.1 Score=39.13 Aligned_cols=18 Identities=28% Similarity=0.459 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
.+.+++.||+|+|||..+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999864
No 321
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=61.98 E-value=4.8 Score=37.25 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=22.4
Q ss_pred hhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 011605 53 PVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 53 ~~Q~~~~~~~~----~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
.-|.+.+..+. ..+..|.| ++..|.||+|||++.
T Consensus 82 ~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 82 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 34666655443 23334766 667999999999873
No 322
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=61.95 E-value=4.7 Score=38.00 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=22.2
Q ss_pred chhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 011605 52 FPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 52 ~~~Q~~~~~~~----~~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
..-|.+.|..+ +..+..|.+ ++..|.||+|||++.
T Consensus 132 ~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 132 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred CCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 34455555433 222334666 677999999999874
No 323
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=61.86 E-value=3.8 Score=34.96 Aligned_cols=29 Identities=21% Similarity=0.043 Sum_probs=19.6
Q ss_pred HHhhhC-CCCCCCCEEEECCCCchhHHHhH
Q 011605 59 WQETIG-PGLFERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 59 ~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~ 87 (481)
++.++. .+..|.-+.+.+|+|+|||....
T Consensus 14 LD~~l~ggi~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 14 LDKLLGGGIETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp HHHHTTSSEESSEEEEEEESTTSSHHHHHH
T ss_pred HHhHhcCCCCCCcEEEEECCCCCCHHHHHH
Confidence 344442 33345568899999999997643
No 324
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=61.84 E-value=4.9 Score=33.77 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCchhHHHh
Q 011605 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~ 86 (481)
.|.-+.+.||+|+|||...
T Consensus 19 ~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3666889999999999753
No 325
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=61.72 E-value=4.1 Score=33.07 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.0
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+..+++.|++|+|||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 455889999999999864
No 326
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=61.66 E-value=4.8 Score=37.18 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=22.3
Q ss_pred hhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 011605 53 PVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 53 ~~Q~~~~~~~----~~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
.-|.+.+..+ +..+..|.| ++..|.||+|||++.
T Consensus 71 a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 71 AGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred ccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4466655443 233334766 677999999999874
No 327
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=61.51 E-value=5.7 Score=38.42 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
..++++.||+|+|||..+-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 5679999999999998653
No 328
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=61.48 E-value=7.9 Score=43.61 Aligned_cols=49 Identities=18% Similarity=0.085 Sum_probs=33.9
Q ss_pred hHHhhhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 58 ~~~~~~~--~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
.++.++. .+..+..+++.+++|+|||..++..+...+.. +.+++|++-.
T Consensus 21 ~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~----G~~vlYI~te 71 (1706)
T 3cmw_A 21 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE 71 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEECTT
T ss_pred HHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhC----CCceEEEEec
Confidence 4455554 44457789999999999998876655555443 3468888644
No 329
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=61.48 E-value=6 Score=36.45 Aligned_cols=53 Identities=9% Similarity=-0.113 Sum_probs=30.0
Q ss_pred HHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHh--ccCCccEEEEcccH
Q 011605 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTR 111 (481)
Q Consensus 59 ~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~--~~~~~~~lil~Pt~ 111 (481)
++.++. .+..|.-+++.|++|+|||..++..+....... ...+.+++|+.-..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 455553 233345578999999999987654333322210 01244677776443
No 330
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=61.37 E-value=5.1 Score=37.43 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=22.4
Q ss_pred chhhHHhHHhh----hCCCCCCCC--EEEECCCCchhHHHh
Q 011605 52 FPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 52 ~~~Q~~~~~~~----~~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
..-|.+.|..+ +..+..|.+ ++..|.||+|||++.
T Consensus 112 ~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 112 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred CCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 34455555442 222334666 677999999999874
No 331
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=61.29 E-value=6.6 Score=40.66 Aligned_cols=18 Identities=39% Similarity=0.658 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
.+.+++.||+|+|||..+
T Consensus 238 p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999754
No 332
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=61.16 E-value=5.1 Score=37.84 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=15.4
Q ss_pred CCCC--EEEECCCCchhHHHh
Q 011605 68 FERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~--~l~~~~tG~GKT~~~ 86 (481)
.|.+ ++..|.||+|||++.
T Consensus 136 ~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 136 DGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred CCCceEEEEecCCCCCCeeEe
Confidence 3666 677999999999874
No 333
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=61.15 E-value=3.1 Score=41.89 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.6
Q ss_pred CCCCEEEECCCCchhHHHh
Q 011605 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~ 86 (481)
.+..+++.+|+|+|||..+
T Consensus 59 ~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHH
Confidence 4788999999999999864
No 334
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=61.05 E-value=4.9 Score=33.03 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+.-+++.|++|+|||..+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4457899999999998653
No 335
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=61.02 E-value=3.8 Score=37.19 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999754
No 336
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=61.01 E-value=4.4 Score=33.40 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=15.2
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+.-+++.|++|+|||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457899999999998653
No 337
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=60.90 E-value=2.7 Score=38.74 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=15.2
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 356999999999999754
No 338
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=60.84 E-value=4.6 Score=37.41 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=22.4
Q ss_pred chhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 011605 52 FPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 52 ~~~Q~~~~~~~~----~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
..-|.+.|..+. ..+..|.+ ++..|.||+|||++.
T Consensus 66 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 66 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred cCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 344655554432 22334666 677999999999873
No 339
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=60.78 E-value=4.7 Score=33.64 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.6
Q ss_pred CCEEEECCCCchhHHHh
Q 011605 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~ 86 (481)
.-+++.|++|+|||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999864
No 340
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=60.68 E-value=7.2 Score=35.47 Aligned_cols=33 Identities=21% Similarity=0.077 Sum_probs=21.4
Q ss_pred HHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHH
Q 011605 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 59 ~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~ 91 (481)
++.++. .+..+.-+++.+++|+|||..++-.+.
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444443 222344578999999999987654444
No 341
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=60.66 E-value=4.4 Score=33.81 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+.-+.+.|++|+|||..+-
T Consensus 25 g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5557899999999998643
No 342
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=60.61 E-value=5.8 Score=37.88 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=23.3
Q ss_pred hhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 011605 53 PVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 53 ~~Q~~~~~~~~----~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
.-|.+.|..+. ..+..|.| ++..|.||+|||++.
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 45777665543 23334766 677999999999874
No 343
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=60.58 E-value=7 Score=32.97 Aligned_cols=28 Identities=25% Similarity=0.081 Sum_probs=19.8
Q ss_pred hHHhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 011605 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 55 Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~ 86 (481)
|..++..+- .|.-+.+.+|+|+|||...
T Consensus 12 ~~~~l~~i~----~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 12 QKHYVDAID----TNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHH----HCSEEEEECCTTSSTTHHH
T ss_pred HHHHHHhcc----CCCEEEEECCCCCCHHHHH
Confidence 334455442 3777889999999999753
No 344
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=60.57 E-value=4 Score=38.39 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.0
Q ss_pred EEEECCCCchhHHHhHH
Q 011605 72 LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~~ 88 (481)
++|.||||+|||..+..
T Consensus 5 i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEECcchhhHHHHHHH
Confidence 67899999999976543
No 345
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=60.56 E-value=4.4 Score=38.93 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.9
Q ss_pred CCEEEECCCCchhHHHh
Q 011605 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~ 86 (481)
.+++++||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999854
No 346
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=60.45 E-value=5 Score=36.77 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.8
Q ss_pred CCEEEECCCCchhHHHh
Q 011605 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~ 86 (481)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56899999999999754
No 347
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=60.32 E-value=5.9 Score=35.08 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.4
Q ss_pred CCEEEECCCCchhHHHh
Q 011605 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~ 86 (481)
+++++.+|+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 44999999999999754
No 348
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=59.94 E-value=4.6 Score=33.90 Aligned_cols=18 Identities=33% Similarity=0.169 Sum_probs=14.6
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+.-+.+.|++|+|||..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445779999999999754
No 349
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=59.69 E-value=5.7 Score=32.21 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.5
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
.+++.+++|+|||..+-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68899999999998653
No 350
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=59.64 E-value=5.2 Score=32.92 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.4
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
-+++.+|+|+|||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4678999999999854
No 351
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=59.54 E-value=10 Score=36.16 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=22.7
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
..+++.+++|+|||.++...+...... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~----G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR----GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH----HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEe
Confidence 358899999999998765433332222 23677765
No 352
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=59.42 E-value=6.2 Score=32.24 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=14.9
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
..+++.|++|+|||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458899999999998653
No 353
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=59.33 E-value=5 Score=37.36 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=22.4
Q ss_pred chhhHHhHHhhh----CCCCCCCC--EEEECCCCchhHHHh
Q 011605 52 FPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 52 ~~~Q~~~~~~~~----~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
..-|.+.|..+. ..+..|.| ++..|.||+|||++.
T Consensus 78 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 78 ESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceec
Confidence 344666555432 22334666 678999999999873
No 354
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=59.19 E-value=4.6 Score=37.50 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=15.3
Q ss_pred CCCC--EEEECCCCchhHHHh
Q 011605 68 FERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~--~l~~~~tG~GKT~~~ 86 (481)
.|.| ++..|.||+|||++.
T Consensus 77 ~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 77 DGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp TTCEEEEEEEECTTSSHHHHH
T ss_pred cCCceEEEEECCCCCCCeEee
Confidence 3666 667999999999874
No 355
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=59.10 E-value=4.8 Score=39.14 Aligned_cols=18 Identities=39% Similarity=0.658 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
..++++.||+|+|||..+
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 467999999999999854
No 356
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=58.94 E-value=5.3 Score=33.70 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=14.0
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
.+++.|++|+|||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998653
No 357
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=58.84 E-value=4.8 Score=34.38 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=15.0
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
...+++.|++|+|||..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 345889999999999864
No 358
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=58.70 E-value=9.1 Score=34.81 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=21.1
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
-+.+.+++|+|||.++...+ ..+.. .+.+++++.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA-~~l~~---~g~kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMA-NYYAE---LGYKVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHH-HHHHH---TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHH---CCCeEEEEe
Confidence 36789999999998754322 22222 234676663
No 359
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=58.58 E-value=5.6 Score=37.05 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=23.7
Q ss_pred cchhhHHhHHhh---hCCCCCCCC--EEEECCCCchhHHHh
Q 011605 51 LFPVQVAVWQET---IGPGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 51 ~~~~Q~~~~~~~---~~~~~~~~~--~l~~~~tG~GKT~~~ 86 (481)
+..-|.+.|..+ +..+..|.| ++..|.||+|||++.
T Consensus 93 ~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 93 PGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp TTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred CcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 344566665543 233445766 677999999999874
No 360
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=58.53 E-value=9.2 Score=27.57 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 370 (481)
+.+++++|.+-..+...+..|+..| +++..+.|++.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNG---VNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTT---CEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCC---CCEEEecccHH
Confidence 5689999999999999999999887 57888888864
No 361
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.44 E-value=8.3 Score=35.45 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=14.5
Q ss_pred CCEEEECCCCchhHHHh
Q 011605 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~ 86 (481)
.++++.||+|+|||..+
T Consensus 37 ~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34999999999999864
No 362
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=58.27 E-value=4.7 Score=34.56 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=11.0
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
|.-+.+.||+|+|||...
T Consensus 27 G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCEEEEECSCC----CHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 555789999999999754
No 363
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=58.14 E-value=6.6 Score=34.24 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=16.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+..+++.|++|+|||..+-
T Consensus 48 g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TCCEEEECSTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 7889999999999998643
No 364
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=57.90 E-value=5.7 Score=33.54 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.0
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
.+++.|++|+|||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36889999999998653
No 365
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=57.84 E-value=6.7 Score=37.44 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
..++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999864
No 366
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=57.78 E-value=5.8 Score=32.66 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=14.7
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
.-+++.|++|||||..+-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999998653
No 367
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=57.58 E-value=6.3 Score=33.40 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+..+++.|++|+|||..+-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999998653
No 368
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=57.38 E-value=6.1 Score=32.36 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.3
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
.+.+.||+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999753
No 369
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=57.38 E-value=14 Score=32.34 Aligned_cols=61 Identities=8% Similarity=-0.083 Sum_probs=34.5
Q ss_pred HHhhhCCC-CCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011605 59 WQETIGPG-LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 59 ~~~~~~~~-~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (481)
++.++... .++..+++.+++|+|||..++-.+...+.+ +-++++++-... ..++.+.++.+
T Consensus 10 LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~----Ge~~~~~~~~e~-~~~l~~~~~~~ 71 (260)
T 3bs4_A 10 LDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKS----DNLVGMFSISYP-LQLIIRILSRF 71 (260)
T ss_dssp HHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHT----TCEEEEEECSSC-HHHHHHHHHHT
T ss_pred HHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHC----CCcEEEEEEeCC-HHHHHHHHHHc
Confidence 35556543 345667888788888884433334443333 336777764433 44456666665
No 370
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=56.92 E-value=9.2 Score=27.75 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=30.7
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 370 (481)
+.+++++|.+-..+...+..|...| +++..+.|++.
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~ 91 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANG---IDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTT---CEEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCC---CCeEEeCCCHH
Confidence 5689999999889999999999887 67888888864
No 371
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=56.88 E-value=6 Score=33.66 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=14.7
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
..+.+.|++|+|||..+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998643
No 372
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=56.82 E-value=6.2 Score=33.23 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=13.6
Q ss_pred EEEECCCCchhHHHhH
Q 011605 72 LCINSPTGSGKTLSYA 87 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~ 87 (481)
+++.||+|+||+..+-
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998654
No 373
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=56.80 E-value=5.8 Score=33.55 Aligned_cols=76 Identities=9% Similarity=0.142 Sum_probs=48.8
Q ss_pred CCeEEEEecchhhHHHHHHHHhhcccc-----ceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-----ccc-CCC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR-GMD 400 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-----l~~-Gvd 400 (481)
+.++||.++++..+.++++.+++.... +..+..++|+.+..+.. +.+ ....+|+|+|.. +.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999999998888765321 35677777776543211 111 235789999942 222 345
Q ss_pred CCCCcEEEEcC
Q 011605 401 VEGVNNVVNYD 411 (481)
Q Consensus 401 l~~~~~Vi~~~ 411 (481)
+..++.+|.-.
T Consensus 148 ~~~~~~lViDE 158 (219)
T 1q0u_A 148 VHTAHILVVDE 158 (219)
T ss_dssp GGGCCEEEECS
T ss_pred cCcceEEEEcC
Confidence 66677777533
No 374
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=56.77 E-value=3.2 Score=36.90 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=19.0
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHH
Q 011605 66 GLFERDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 66 ~~~~~~~l~~~~tG~GKT~~~~~~~ 90 (481)
+..|.-+++.+++|+|||..+...+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3346778999999999998765433
No 375
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=56.65 E-value=8.7 Score=28.25 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=31.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccCh
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 371 (481)
.+.++++||.+-..+...+..|+..| +++..+.|++..
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G---~~v~~l~GG~~~ 91 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLG---LNIVDVEGGIQS 91 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTT---CCEEEETTHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcC---CCEEEEcCcHHH
Confidence 35689999999889999999999887 578888888653
No 376
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=56.62 E-value=6.4 Score=31.69 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=14.7
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
..+++.|++|+|||.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357899999999998653
No 377
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=56.59 E-value=7.9 Score=36.46 Aligned_cols=41 Identities=10% Similarity=-0.150 Sum_probs=24.2
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHh--ccCCccEEEEcc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLP 109 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~--~~~~~~~lil~P 109 (481)
|.-+.+.+|+|+|||..+...++..+... ...+.+++++.-
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 44578999999999986553333222211 012346777754
No 378
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=56.56 E-value=5.8 Score=32.72 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+..+++.|++|+|||..+-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568899999999998653
No 379
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=56.16 E-value=12 Score=33.72 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=22.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
+.-+.+.||+|+|||...-. +..+... .+.++++..
T Consensus 100 g~vi~lvG~nGsGKTTll~~--Lag~l~~--~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGK--LAHRLKN--EGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHH--HHHHHHH--TTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHH--HHHHHHH--cCCeEEEEe
Confidence 34477999999999986432 2333332 233566664
No 380
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=56.13 E-value=7.6 Score=32.17 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=14.2
Q ss_pred CCEEEECCCCchhHHHh
Q 011605 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~ 86 (481)
..+.+.+++|+|||...
T Consensus 2 ~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCEEEESCCSSCHHHHH
T ss_pred CEEEEECCCCChHHHHH
Confidence 45789999999999864
No 381
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=56.12 E-value=6.3 Score=32.94 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=13.0
Q ss_pred EEEECCCCchhHHHh
Q 011605 72 LCINSPTGSGKTLSY 86 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~ 86 (481)
+.+.|++|+|||.++
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999864
No 382
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=55.98 E-value=10 Score=33.08 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.3
Q ss_pred CCEEEECCCCchhHHHh
Q 011605 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~ 86 (481)
..+++.|++|+|||..+
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34789999999999864
No 383
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.96 E-value=10 Score=34.21 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=14.5
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
++++.||+|+|||..+.
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 49999999999997643
No 384
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=55.87 E-value=5.6 Score=32.67 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=14.0
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
-+++.|++|+|||..+-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998653
No 385
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=55.39 E-value=6.7 Score=32.86 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+.-+++.|+.|+|||..+-
T Consensus 10 ~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp SCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 5568899999999998654
No 386
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=55.39 E-value=5.9 Score=32.53 Aligned_cols=17 Identities=29% Similarity=0.303 Sum_probs=14.2
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
-+++.|++|+|||.++-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998653
No 387
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=55.39 E-value=5.2 Score=34.54 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=15.4
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467788999999999973
No 388
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=55.31 E-value=5.5 Score=31.51 Aligned_cols=15 Identities=33% Similarity=0.213 Sum_probs=12.9
Q ss_pred CEEEECCCCchhHHH
Q 011605 71 DLCINSPTGSGKTLS 85 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~ 85 (481)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368899999999975
No 389
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=55.28 E-value=13 Score=38.63 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
.+.+++.+|+|+|||+.+
T Consensus 511 ~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CSCCEEESSTTSSHHHHH
T ss_pred CceEEEecCCCCCchHHH
Confidence 467999999999999753
No 390
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=55.21 E-value=9.1 Score=35.70 Aligned_cols=22 Identities=27% Similarity=0.125 Sum_probs=17.3
Q ss_pred CCCCCCCEEEECCCCchhHHHh
Q 011605 65 PGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 65 ~~~~~~~~l~~~~tG~GKT~~~ 86 (481)
.+..+..+++.||+|+|||...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHH
Confidence 3445667899999999999754
No 391
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=55.20 E-value=5.7 Score=37.07 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=14.4
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
.+++.||+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999864
No 392
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=55.11 E-value=7.1 Score=33.15 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
...+++.|++|+|||..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568899999999998653
No 393
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=55.05 E-value=10 Score=27.62 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=29.4
Q ss_pred CCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 370 (481)
+.+++++|.+-..+...+..|++.| +....+.|++.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G---~~~~~l~GG~~ 91 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANG---IDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTT---CEEEEETTHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcC---CCEEEecChHH
Confidence 5689999999888999999999887 66666777753
No 394
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=54.96 E-value=6.8 Score=33.30 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=14.3
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
+-+++.||+|+||+..+-
T Consensus 30 kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp EEEEEECCTTCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 336789999999998654
No 395
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=54.90 E-value=11 Score=43.33 Aligned_cols=48 Identities=19% Similarity=0.094 Sum_probs=33.5
Q ss_pred HHhhhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc
Q 011605 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 59 ~~~~~~--~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (481)
++.++. .+..+.++++.+++|+|||..+...+...+.. +.+++|++-.
T Consensus 1069 Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~----Ge~~~Fit~e 1118 (2050)
T 3cmu_A 1069 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE 1118 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTT
T ss_pred HHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEEcc
Confidence 455663 45567889999999999998766555554433 4478888644
No 396
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=54.82 E-value=6.9 Score=32.57 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=14.8
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
..+++.|++|+|||..+-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999998653
No 397
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=54.71 E-value=7.5 Score=33.34 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
...+++.|++|+|||..+-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568899999999998654
No 398
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=54.53 E-value=6.9 Score=32.48 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=13.5
Q ss_pred EEEECCCCchhHHHhH
Q 011605 72 LCINSPTGSGKTLSYA 87 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~ 87 (481)
+++.|++|+|||..+-
T Consensus 3 I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 6789999999998643
No 399
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=54.45 E-value=12 Score=33.66 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=22.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
+.-+.+.+|+|+|||...- .+..+... .+.++++..
T Consensus 102 g~vi~lvG~nGsGKTTll~--~Lagll~~--~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA--KLGRYYQN--LGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH--HHHHHHHT--TTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHH--HHHHHHHh--cCCEEEEEe
Confidence 3447789999999998643 33333332 233566654
No 400
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=54.44 E-value=6.2 Score=32.67 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.0
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+.-+++.|++|+|||..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345889999999999865
No 401
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=54.41 E-value=5.9 Score=32.29 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+..+++.++.|+|||..++
T Consensus 16 G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TEEEEEEESSSSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 6779999999999997653
No 402
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=54.37 E-value=11 Score=37.04 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=30.1
Q ss_pred hHHhhhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 58 ~~~~~~~-~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
+++.+.- .+..|.-+++.+|+|+|||......++.-+.... ...+++.
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~ 75 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVT 75 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEE
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEE
Confidence 4555544 4556778999999999999876543344444421 1355554
No 403
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=54.24 E-value=33 Score=35.52 Aligned_cols=76 Identities=11% Similarity=0.033 Sum_probs=53.5
Q ss_pred HhcCCCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-c-----c----
Q 011605 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----T---- 396 (481)
Q Consensus 328 ~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l-----~---- 396 (481)
....+..++|.+++...|.+.++.+..+. ..++.+..+.|+++..+|.... ..+|+++|+. + .
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 33456789999999999999888776643 2458889999999876555432 3689999962 2 1
Q ss_pred ---cCCCCCCCcEEEE
Q 011605 397 ---RGMDVEGVNNVVN 409 (481)
Q Consensus 397 ---~Gvdl~~~~~Vi~ 409 (481)
..+++..+.++|.
T Consensus 194 ~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred cchhhhcccCCCEEEE
Confidence 1355667777664
No 404
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.19 E-value=6.6 Score=38.55 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.3
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
+.+++.||+|+|||..+-
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 568999999999998653
No 405
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=53.76 E-value=6.8 Score=31.85 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+..+.+.+++|+|||..+-
T Consensus 5 g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4557899999999998643
No 406
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=53.70 E-value=7.4 Score=32.38 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=13.6
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
-+++.|++|+|||..+
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999864
No 407
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=53.69 E-value=6.6 Score=37.99 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=15.2
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
.+.+++.||+|+|||..+
T Consensus 49 p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356999999999999854
No 408
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=53.47 E-value=29 Score=35.92 Aligned_cols=60 Identities=8% Similarity=-0.048 Sum_probs=44.7
Q ss_pred hcCCCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc
Q 011605 329 SLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (481)
Q Consensus 329 ~~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~ 394 (481)
...+.+++|.+++...|.++++.+..+. ..++.+..+.|+++..+|.... ..+|+|+|+.
T Consensus 112 ~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 112 ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp HTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred HHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 3456689999999999998888776643 2457889999999876544332 3689999963
No 409
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=53.39 E-value=22 Score=32.88 Aligned_cols=75 Identities=11% Similarity=0.215 Sum_probs=51.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-c----c-cCCCCCC
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M----T-RGMDVEG 403 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l----~-~Gvdl~~ 403 (481)
.+.++||.+++...+.++++.+.+.. ..+..+..++|+.+..+....+. ..+|+|+|.- + . ..+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 35689999999999999998887653 33467888889887655544433 3579999842 1 1 2345566
Q ss_pred CcEEEEc
Q 011605 404 VNNVVNY 410 (481)
Q Consensus 404 ~~~Vi~~ 410 (481)
+++||.-
T Consensus 163 ~~~vIiD 169 (394)
T 1fuu_A 163 IKMFILD 169 (394)
T ss_dssp CCEEEEE
T ss_pred CcEEEEE
Confidence 7777753
No 410
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=53.36 E-value=3.4 Score=42.32 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=49.9
Q ss_pred CeEEEEecchhhHHHH-HHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc-cccc-----------CC
Q 011605 333 EKCIVFTSSVESTHRL-CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTR-----------GM 399 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l-~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~-~l~~-----------Gv 399 (481)
.++||.++++..+.+. ++.++++......+..++|+.+..++...+. +..+|+|+|. .+.. .+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999999999 8888887654578888999887654333222 4678999984 3322 24
Q ss_pred CCCCCcEEEEcC
Q 011605 400 DVEGVNNVVNYD 411 (481)
Q Consensus 400 dl~~~~~Vi~~~ 411 (481)
.+..+++||.-.
T Consensus 133 ~~~~~~lvViDE 144 (699)
T 4gl2_A 133 QLSDFSLIIIDE 144 (699)
T ss_dssp CGGGCSEEEEES
T ss_pred ecccCcEEEEEC
Confidence 566778877633
No 411
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=53.34 E-value=11 Score=34.26 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=12.8
Q ss_pred CEEEECCCCchhHHH
Q 011605 71 DLCINSPTGSGKTLS 85 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~ 85 (481)
-+++.|+.|+|||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 367899999999974
No 412
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=53.23 E-value=7.8 Score=31.00 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=13.6
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
.+++.+++|+|||..+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3678999999999864
No 413
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=53.02 E-value=13 Score=31.02 Aligned_cols=76 Identities=12% Similarity=0.197 Sum_probs=45.7
Q ss_pred CCeEEEEecchhhHHH-HHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-cc----c-------C
Q 011605 332 EEKCIVFTSSVESTHR-LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MT----R-------G 398 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~-l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l~----~-------G 398 (481)
..++||+|++...+.+ +.+.+..+...+..+..++|+.+...+...+. ...+|+|+|.- +. . +
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccc
Confidence 5789999999998888 66667665444567788888765432221111 14678888842 21 1 2
Q ss_pred CCCCCCcEEEEcC
Q 011605 399 MDVEGVNNVVNYD 411 (481)
Q Consensus 399 vdl~~~~~Vi~~~ 411 (481)
+.+..++.||.-.
T Consensus 158 ~~~~~~~~iIiDE 170 (216)
T 3b6e_A 158 VQLSDFSLIIIDE 170 (216)
T ss_dssp CCGGGCSEEEETT
T ss_pred cchhcccEEEEEC
Confidence 4555667776543
No 414
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=52.69 E-value=7.8 Score=31.81 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.5
Q ss_pred EEEECCCCchhHHHhH
Q 011605 72 LCINSPTGSGKTLSYA 87 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~ 87 (481)
+++.|+.|+|||..+-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999998653
No 415
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=52.59 E-value=17 Score=37.11 Aligned_cols=91 Identities=10% Similarity=0.083 Sum_probs=60.2
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccChHHHHHHHHHHhcCCceEEEEcc-----ccccCCC-CCCC
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRGMD-VEGV 404 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~-----~l~~Gvd-l~~~ 404 (481)
.+.++++.++++..+.+.++.++.+...+..+...+|+....++ ..+..+|+|+|. .+..+.. +..+
T Consensus 67 ~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~ 139 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAV 139 (702)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGC
T ss_pred hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhc
Confidence 36799999999999999999987665556788888888765332 124789999995 2223323 5567
Q ss_pred cEEEEcCCCC-----ChhHHHHHhhhccc
Q 011605 405 NNVVNYDKPA-----YIKTYIHRAGRTAR 428 (481)
Q Consensus 405 ~~Vi~~~~~~-----s~~~~~Q~~GR~~R 428 (481)
++||.-.... ....+...++|..+
T Consensus 140 ~~vIiDE~H~l~~~~r~~~~~~ll~~l~~ 168 (702)
T 2p6r_A 140 SCLVVDEIHLLDSEKRGATLEILVTKMRR 168 (702)
T ss_dssp CEEEETTGGGGGCTTTHHHHHHHHHHHHH
T ss_pred CEEEEeeeeecCCCCcccHHHHHHHHHHh
Confidence 8887644332 23344455555544
No 416
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=52.49 E-value=6.4 Score=33.06 Aligned_cols=18 Identities=33% Similarity=0.161 Sum_probs=14.3
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+.-+.+.||+|+|||..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 344779999999999754
No 417
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=52.49 E-value=6.9 Score=32.62 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.5
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
.+.+.|++|+|||..+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4679999999999854
No 418
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=52.45 E-value=8 Score=31.87 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=13.6
Q ss_pred EEEECCCCchhHHHhH
Q 011605 72 LCINSPTGSGKTLSYA 87 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~ 87 (481)
+++.|+.|+|||.++-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999998754
No 419
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=52.36 E-value=8.3 Score=33.60 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=15.1
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+..+.+.||+|+|||..+
T Consensus 27 g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLC 44 (252)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999754
No 420
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=52.29 E-value=6.3 Score=34.08 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=15.4
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999974
No 421
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=51.86 E-value=7.6 Score=31.80 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+.-+++.|++|+|||..+-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4457899999999998654
No 422
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=51.86 E-value=8.3 Score=32.32 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+.-+++.|+.|+|||..+-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999998654
No 423
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=51.81 E-value=6.3 Score=34.59 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=14.8
Q ss_pred CCEEEECCCCchhHHHhH
Q 011605 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~ 87 (481)
.-++++|++|+|||..+-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 357899999999998653
No 424
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=51.78 E-value=8.1 Score=32.26 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+.-+++.|+.|+|||..+-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4457899999999998653
No 425
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=51.74 E-value=9.2 Score=30.56 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=14.8
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.+|.|+|||..
T Consensus 32 ~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SCEEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 355678999999999974
No 426
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=51.47 E-value=9.9 Score=39.37 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
..++++.||+|+|||..+-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 5679999999999998654
No 427
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=51.37 E-value=8.7 Score=31.89 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=14.0
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
.+.+.|++|||||.++-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998653
No 428
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=51.19 E-value=8.1 Score=35.07 Aligned_cols=21 Identities=19% Similarity=0.071 Sum_probs=16.5
Q ss_pred CCCEEEECCCCchhHHHhHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~ 89 (481)
+..+++.+|+|+|||..+...
T Consensus 123 gsviLI~GpPGsGKTtLAlql 143 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHAL 143 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHH
Confidence 455789999999999866543
No 429
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=51.11 E-value=75 Score=29.41 Aligned_cols=78 Identities=9% Similarity=0.162 Sum_probs=52.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-----ccc-CCCCCC
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR-GMDVEG 403 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-----l~~-Gvdl~~ 403 (481)
...++||.++++..+.++++.++.++ ..+..+....|+.+.. ...+.+..+..+|+|+|.- +.. .+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVR---AEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHH---HHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchH---HHHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 45689999999999999999988764 2335666667766543 3345556678899999942 222 245666
Q ss_pred CcEEEEcC
Q 011605 404 VNNVVNYD 411 (481)
Q Consensus 404 ~~~Vi~~~ 411 (481)
+++||.-.
T Consensus 184 ~~~vViDE 191 (414)
T 3eiq_A 184 IKMFVLDE 191 (414)
T ss_dssp CCEEEECS
T ss_pred CcEEEEEC
Confidence 77776533
No 430
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=50.93 E-value=8.3 Score=38.11 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCchhHHHh
Q 011605 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~ 86 (481)
.+..+++.+|+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999754
No 431
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=50.89 E-value=27 Score=29.88 Aligned_cols=121 Identities=8% Similarity=0.085 Sum_probs=66.0
Q ss_pred CCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-c----cc---CCCCC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M----TR---GMDVE 402 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l----~~---Gvdl~ 402 (481)
+.++||.++++..+.++++.+++.. ..+..+..++++..... .......+..+|+|+|.- + .. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 4479999999999999999988753 23355666665432211 111223456789999942 2 11 46788
Q ss_pred CCcEEEEcCCCCCh----hHHHHHhhhcc-cCCCCccEEEEeecchHHHHHHHHHHhc
Q 011605 403 GVNNVVNYDKPAYI----KTYIHRAGRTA-RAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (481)
Q Consensus 403 ~~~~Vi~~~~~~s~----~~~~Q~~GR~~-R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
.++++|.-....-. ..|...+-+.. +....+.-+++++..--+.+.++++...
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l 232 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNL 232 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHS
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhC
Confidence 88888764422100 11222222221 1112233445556554555666665553
No 432
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=50.69 E-value=7.7 Score=32.70 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=14.0
Q ss_pred CEEEECCCCchhHHHhH
Q 011605 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~ 87 (481)
.+++.|++|+|||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36899999999998653
No 433
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=50.59 E-value=6.1 Score=32.15 Aligned_cols=16 Identities=38% Similarity=0.306 Sum_probs=13.3
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
-+.+.+++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999764
No 434
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=50.47 E-value=16 Score=33.80 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=21.6
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
.-+.+.+|+|+|||...-. +..+... .+.++++..
T Consensus 158 ~vi~lvG~nGsGKTTll~~--Lag~l~~--~~G~V~l~g 192 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGK--LAHRLKN--EGTKVLMAA 192 (359)
T ss_dssp EEEEEECCTTSCHHHHHHH--HHHHHHH--TTCCEEEEC
T ss_pred eEEEEEcCCCChHHHHHHH--HHhhccc--cCCEEEEec
Confidence 3477999999999986432 3333332 233566664
No 435
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=50.45 E-value=7.6 Score=31.58 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=11.2
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+.-+++.|++|+|||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457899999999998653
No 436
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=50.44 E-value=8.7 Score=33.24 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
...+++.|+.|+|||..+-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3458899999999998653
No 437
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=50.25 E-value=8.8 Score=33.21 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=14.8
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
..-+++.|++|+|||..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 345889999999999754
No 438
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=50.09 E-value=55 Score=31.66 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=48.7
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhccccCceEEEeccCcchHHHHHHHhhccccccCccCChhhHHHhhcCCCcEEEeCch
Q 011605 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (481)
Q Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~T~~ 181 (481)
.+.++++....-+..+.+.+... +.++..++|+.+..+...... +......+|+|+|++
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~-----------------~f~~g~~~vLv~T~~ 406 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKT-----------------LAENGKGIIIVASYG 406 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHH-----------------HHHHCCSCEEEEEHH
T ss_pred CCeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHH-----------------HHhCCCCCEEEEEcC
Confidence 34555555555555444444443 558888999887655432211 122345789999977
Q ss_pred HHHHHHhcCCCcccCCccEEEEechh
Q 011605 182 RLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~iVvDE~H 207 (481)
.+.. ++++..+++||+....
T Consensus 407 ~~~~------GiDip~v~~vi~~~~~ 426 (510)
T 2oca_A 407 VFST------GISVKNLHHVVLAHGV 426 (510)
T ss_dssp HHHH------SCCCCSEEEEEESSCC
T ss_pred hhhc------ccccccCcEEEEeCCC
Confidence 6533 3567778899987776
No 439
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=50.04 E-value=8.9 Score=32.61 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=13.6
Q ss_pred EEEECCCCchhHHHhH
Q 011605 72 LCINSPTGSGKTLSYA 87 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~ 87 (481)
+++.|++|+|||..+-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998653
No 440
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=49.73 E-value=24 Score=34.57 Aligned_cols=75 Identities=13% Similarity=0.259 Sum_probs=50.6
Q ss_pred CCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-cc----cC-C-CCCC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MT----RG-M-DVEG 403 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l~----~G-v-dl~~ 403 (481)
+.++||++++...+.+..+.++... ..+..+..++|+.+..++...+. +..+|+|+|.- +. .+ + ++..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 6789999999999999888887652 22478888999886554332221 13689999842 22 22 2 4556
Q ss_pred CcEEEEc
Q 011605 404 VNNVVNY 410 (481)
Q Consensus 404 ~~~Vi~~ 410 (481)
+++||.-
T Consensus 128 ~~~vViD 134 (555)
T 3tbk_A 128 FTLMIFD 134 (555)
T ss_dssp CSEEEET
T ss_pred CCEEEEE
Confidence 7777763
No 441
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=49.68 E-value=8.8 Score=32.52 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.+|+|+|||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999974
No 442
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=49.63 E-value=15 Score=32.88 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=20.9
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
-+.+.+++|+|||..+...+. .+.. .+.+++++.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~-~~~~---~g~~v~l~~ 133 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAY-FYKK---KGFKVGLVG 133 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHH-HHHH---TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH---CCCeEEEEe
Confidence 366789999999987544332 2222 233666664
No 443
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=49.54 E-value=8.9 Score=31.20 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=13.0
Q ss_pred CEEEECCCCchhHHH
Q 011605 71 DLCINSPTGSGKTLS 85 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~ 85 (481)
-.++.+++|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 467899999999975
No 444
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=49.49 E-value=16 Score=34.87 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=22.1
Q ss_pred CEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
.+++.+++|+|||.++.-.+. .+... .+.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~-~l~~~--~G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGK-FLREK--HKKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHHT--SCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHh--cCCeEEEEe
Confidence 366789999999987654333 33321 144677764
No 445
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=49.26 E-value=28 Score=34.09 Aligned_cols=75 Identities=11% Similarity=0.167 Sum_probs=48.2
Q ss_pred CCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-cc----cC-C-CCCC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MT----RG-M-DVEG 403 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l~----~G-v-dl~~ 403 (481)
+.++||.++++..+.+..+.++.+. ..+..+..++|+.+..++...+. ...+|+|+|.- +. .+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 6789999999999999988887752 22478888999886544332221 13689999842 22 22 3 5667
Q ss_pred CcEEEEc
Q 011605 404 VNNVVNY 410 (481)
Q Consensus 404 ~~~Vi~~ 410 (481)
+++||.-
T Consensus 131 ~~~vViD 137 (556)
T 4a2p_A 131 FTLMIFD 137 (556)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 7887763
No 446
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=49.26 E-value=27 Score=32.66 Aligned_cols=33 Identities=18% Similarity=0.061 Sum_probs=24.7
Q ss_pred hhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHh
Q 011605 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 53 ~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~ 86 (481)
..-.++++. +..+-+|+..++.++.|+|||...
T Consensus 160 ~tGiraID~-l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 160 IYSTRLIDL-FAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp CHHHHHHHH-HSCCBTTCEEEEEECTTCCHHHHH
T ss_pred hccchhhhh-cccccCCceEEEecCCCCChhHHH
Confidence 344455555 455667899999999999999865
No 447
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=49.24 E-value=43 Score=34.95 Aligned_cols=76 Identities=8% Similarity=0.073 Sum_probs=53.3
Q ss_pred HhcCCCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-c-----c----
Q 011605 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----T---- 396 (481)
Q Consensus 328 ~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l-----~---- 396 (481)
....+.+++|.+++...|.+.++.+..+. ..++.+.++.|+++..+|.... .++|+++|+. + .
T Consensus 148 ~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~ 221 (922)
T 1nkt_A 148 NALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMA 221 (922)
T ss_dssp HHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhh
Confidence 34456789999999999988888776543 2458899999999876655433 3689999963 2 1
Q ss_pred ---cCCCCCCCcEEEE
Q 011605 397 ---RGMDVEGVNNVVN 409 (481)
Q Consensus 397 ---~Gvdl~~~~~Vi~ 409 (481)
..+.+.++.++|.
T Consensus 222 ~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 222 HSLDDLVQRGHHYAIV 237 (922)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred ccHhhhccCCCCEEEE
Confidence 1355666776664
No 448
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=49.16 E-value=37 Score=35.56 Aligned_cols=61 Identities=13% Similarity=0.068 Sum_probs=46.2
Q ss_pred HhcCCCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc
Q 011605 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (481)
Q Consensus 328 ~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~ 394 (481)
....+.+++|.+++...|.+.++.+..+. ..++.+..+.|+++..+|.... .++|+++|+.
T Consensus 116 ~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 116 NALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 34456789999999999998888876643 3458899999999876655543 3789999964
No 449
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=49.05 E-value=90 Score=30.14 Aligned_cols=70 Identities=11% Similarity=0.014 Sum_probs=39.6
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc--ccHHHHHHHHHHHHHh
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAI 124 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~ 124 (481)
+|-.-=.++++. +..+-+|+...+.++.|+|||..+ ++.+.+.+..+..++|+. -...-+.++.+.+..-
T Consensus 144 epl~TGikaID~-l~PigrGQR~~Ifg~~g~GKT~l~----l~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~l~~~ 215 (513)
T 3oaa_A 144 QPVQTGYKAVDS-MIPIGRGQRELIIGDRQTGKTALA----IDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEH 215 (513)
T ss_dssp CBCCCSCHHHHH-HSCCBTTCBCEEEESSSSSHHHHH----HHHHHTTSSSSCEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred cccccceeeecc-ccccccCCEEEeecCCCCCcchHH----HHHHHhhccCCceEEEEEecCChHHHHHHHHHHhhc
Confidence 333333456665 445667999999999999999753 334444433443344443 2222233455555543
No 450
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=49.01 E-value=8.3 Score=31.95 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=13.6
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
.+.+.+++|||||.++
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778999999999864
No 451
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=48.76 E-value=19 Score=32.63 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=12.9
Q ss_pred EEEECCCCchhHHHh
Q 011605 72 LCINSPTGSGKTLSY 86 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~ 86 (481)
+.+.||+|+|||..+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999864
No 452
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=48.69 E-value=8.4 Score=32.59 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+..+++.|++|+|||..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457899999999998653
No 453
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=48.54 E-value=16 Score=33.28 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=14.5
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+.-+.+.+|+|+|||...
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 344789999999999864
No 454
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=48.50 E-value=18 Score=25.60 Aligned_cols=35 Identities=9% Similarity=0.011 Sum_probs=29.5
Q ss_pred CeEEEEecchhhHHHHHHHHhhccccceeEEEcccccC
Q 011605 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 370 (481)
.+++++|.+-..+...+..|+..| +.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEG---YEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHT---CCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcC---CcEEEEcccHH
Confidence 689999999888999999999887 55777888875
No 455
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=48.47 E-value=7.7 Score=34.05 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.+|+|+|||..
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999974
No 456
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=48.25 E-value=8 Score=34.89 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=16.0
Q ss_pred CCCCCEEEECCCCchhHHH
Q 011605 67 LFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 67 ~~~~~~l~~~~tG~GKT~~ 85 (481)
..|.-+.+.+|+|+|||..
T Consensus 78 ~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 3467789999999999974
No 457
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=47.65 E-value=18 Score=32.39 Aligned_cols=36 Identities=25% Similarity=0.175 Sum_probs=21.4
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEc
Q 011605 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (481)
++-+.+.+++|+|||..+...+ ..+.. .+.+++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la-~~~~~---~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLA-LYYKG---KGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHH-HHHHH---TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHH---cCCeEEEec
Confidence 3446678999999998654322 22222 233666664
No 458
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=47.64 E-value=35 Score=35.49 Aligned_cols=75 Identities=11% Similarity=0.167 Sum_probs=48.2
Q ss_pred CCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-cc----cC-C-CCCC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MT----RG-M-DVEG 403 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l~----~G-v-dl~~ 403 (481)
+.++||.+++...+.+..+.++.+. ..+..+..++|+.+...+...+. +..+|+|+|.- +. .+ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 6789999999999999988887753 22478899999886654332221 25789999842 22 22 3 4556
Q ss_pred CcEEEEc
Q 011605 404 VNNVVNY 410 (481)
Q Consensus 404 ~~~Vi~~ 410 (481)
++.||.-
T Consensus 372 ~~~iViD 378 (797)
T 4a2q_A 372 FTLMIFD 378 (797)
T ss_dssp CSEEEET
T ss_pred CCEEEEE
Confidence 7777763
No 459
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=47.30 E-value=9 Score=32.85 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.4
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.+|+|+|||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999974
No 460
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=47.22 E-value=8.7 Score=34.05 Aligned_cols=18 Identities=22% Similarity=0.123 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466688999999999974
No 461
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=47.08 E-value=8.6 Score=35.56 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=14.9
Q ss_pred CCC--EEEECCCCchhHHHh
Q 011605 69 ERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~--~l~~~~tG~GKT~~~ 86 (481)
|.+ ++..|.||+|||++.
T Consensus 83 G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 83 GCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp CCEEEEEEECCTTSSHHHHH
T ss_pred CceeEEEeeCCCCCCCCEEE
Confidence 555 688999999999874
No 462
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=47.05 E-value=16 Score=33.59 Aligned_cols=29 Identities=17% Similarity=0.081 Sum_probs=23.2
Q ss_pred HHhHHhhhCCCCCCCCEEEECCCCchhHHH
Q 011605 56 VAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 56 ~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~ 85 (481)
..+++.+ -.+..|+.+.+.+|.|+|||..
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTL 87 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTL 87 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHH
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHH
Confidence 4566766 5566788899999999999985
No 463
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=46.96 E-value=9.1 Score=33.26 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.4
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.+|+|+|||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999974
No 464
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=46.79 E-value=8.1 Score=35.91 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.4
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
-.++.||||+|||...
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4679999999999753
No 465
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=46.75 E-value=8.5 Score=33.84 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.2
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466688999999999974
No 466
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=46.39 E-value=11 Score=31.63 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchhHHHhH
Q 011605 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~ 87 (481)
+.-+++.|++|+|||..+-
T Consensus 25 ~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5557889999999998653
No 467
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=46.38 E-value=16 Score=37.74 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 011605 68 FERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~~ 87 (481)
.+.++++.||+|+|||..+-
T Consensus 206 ~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHH
Confidence 35679999999999998654
No 468
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=46.36 E-value=9.9 Score=37.00 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.6
Q ss_pred CCEEEECCCCchhHHHh
Q 011605 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~ 86 (481)
+.+++.+|+|+|||..+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999754
No 469
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=46.14 E-value=7.3 Score=33.77 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.2
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.+|+|+|||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466688999999999974
No 470
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=45.90 E-value=9.7 Score=33.33 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999974
No 471
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=45.85 E-value=8.9 Score=33.55 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 40 ~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466788999999999974
No 472
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=45.83 E-value=9.8 Score=32.89 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.+|+|+|||..
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999974
No 473
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=45.77 E-value=9 Score=33.87 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.4
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 44 ~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999974
No 474
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=45.74 E-value=11 Score=31.67 Aligned_cols=16 Identities=25% Similarity=0.327 Sum_probs=13.6
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
-+.+.|++|||||.++
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4679999999999854
No 475
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=45.64 E-value=9 Score=33.68 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 466788999999999974
No 476
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=45.61 E-value=10 Score=31.56 Aligned_cols=17 Identities=35% Similarity=0.210 Sum_probs=13.9
Q ss_pred CCEEEECCCCchhHHHh
Q 011605 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~ 86 (481)
.-+.+.|++|+|||..+
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34778999999999864
No 477
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=45.58 E-value=25 Score=33.47 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=23.4
Q ss_pred HHhHHhhhCCCCCCCCEEEECCCCchhHHH
Q 011605 56 VAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 56 ~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~ 85 (481)
..+++.+ -.+..|+-+.+.+|.|+|||..
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTL 173 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVL 173 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHH
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHH
Confidence 3567776 5666788899999999999975
No 478
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=45.52 E-value=9.7 Score=33.55 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 466788999999999974
No 479
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=45.47 E-value=2.1e+02 Score=27.54 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=66.4
Q ss_pred CchHHHHHHHHHhcCCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccc--------cC----hHHHHHHHHHHhcC
Q 011605 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL--------QR----QSVRSKTLKAFREG 384 (481)
Q Consensus 317 ~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~--------~~----~~~r~~~~~~f~~g 384 (481)
..|...+..+.... +.++||.|++...|.+++..|+.+.+.. +.++-+. .+ ..+|...+..+.++
T Consensus 25 s~ka~~~a~l~~~~-~~p~lvv~~~~~~A~~l~~~l~~~~~~~--v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~ 101 (483)
T 3hjh_A 25 AACATLVAEIAERH-AGPVVLIAPDMQNALRLHDEISQFTDQM--VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM 101 (483)
T ss_dssp THHHHHHHHHHHHS-SSCEEEEESSHHHHHHHHHHHHHTCSSC--EEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGC
T ss_pred hHHHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHhhCCCc--EEEEeCcccccccccCCChHHHHHHHHHHHHHHhC
Confidence 34444555555443 6789999999999999999998764332 3333221 11 23577888888888
Q ss_pred CceEEEEccccccCCCCC-----CCcEEEEcCCCCChhHHHHHhh
Q 011605 385 KIQVLVSSDAMTRGMDVE-----GVNNVVNYDKPAYIKTYIHRAG 424 (481)
Q Consensus 385 ~~~iLv~t~~l~~Gvdl~-----~~~~Vi~~~~~~s~~~~~Q~~G 424 (481)
+..|+|+|-....+.=.| +....+..+...+...+.++.-
T Consensus 102 ~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L~ 146 (483)
T 3hjh_A 102 QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLD 146 (483)
T ss_dssp CSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHHH
T ss_pred CCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHHH
Confidence 888888874333332222 2345666666677777776653
No 480
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=45.46 E-value=11 Score=39.22 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCchhHHHh
Q 011605 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~~ 86 (481)
.+..+++.||+|+|||..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4677999999999999754
No 481
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=45.35 E-value=8.7 Score=32.80 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.1
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466688999999999974
No 482
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=45.28 E-value=9.2 Score=33.67 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 466788999999999974
No 483
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=44.92 E-value=28 Score=26.31 Aligned_cols=38 Identities=11% Similarity=0.306 Sum_probs=30.6
Q ss_pred CC-CeEEEEe-cchhhHHHHHHHHhhccccceeEEEcccccCh
Q 011605 331 GE-EKCIVFT-SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (481)
Q Consensus 331 ~~-~~~lVf~-~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 371 (481)
.+ .+++++| .+-..+...+..|+..| +++..+.|++..
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G---~~v~~l~GG~~~ 126 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLG---VNVYQLEGGYKA 126 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTT---CCCEEETTHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcC---CceEEEeCcHHH
Confidence 34 7899999 57778889999999887 578888888754
No 484
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=44.92 E-value=22 Score=34.40 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=21.1
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEE
Q 011605 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (481)
Q Consensus 70 ~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil 107 (481)
.-+.+.|++|+|||...-. +..+... .+.++++.
T Consensus 294 eVI~LVGpNGSGKTTLl~~--LAgll~~--~~G~V~l~ 327 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGK--LARQFEQ--QGKSVMLA 327 (503)
T ss_dssp EEEEEECCTTSSHHHHHHH--HHHHHHH--TTCCEEEE
T ss_pred eEEEEECCCcccHHHHHHH--HHHHhhh--cCCeEEEe
Confidence 3477899999999986432 2233332 23467766
No 485
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=44.66 E-value=27 Score=28.16 Aligned_cols=16 Identities=25% Similarity=0.040 Sum_probs=13.1
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
-+.+.++.|+|||...
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999754
No 486
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=44.56 E-value=12 Score=32.44 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.6
Q ss_pred EEEECCCCchhHHHhH
Q 011605 72 LCINSPTGSGKTLSYA 87 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~~ 87 (481)
+.+.|++|||||.++-
T Consensus 25 I~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998653
No 487
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=44.40 E-value=12 Score=34.43 Aligned_cols=21 Identities=24% Similarity=0.026 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhHHH
Q 011605 69 ERDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~~~~ 89 (481)
|.-+.+.+|+|+|||..+...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l 151 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTL 151 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 334789999999999876543
No 488
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=44.31 E-value=20 Score=26.14 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=30.3
Q ss_pred CCCeEEEEecchhhHHHHHHHHhhccccceeEEEcccccC
Q 011605 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 370 (481)
.+.+++++|.+-..+...+..|...|. .++..+.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~--~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGF--EHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTC--SCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCC--cCEEEecCCHH
Confidence 356899999998889999999998872 14778888864
No 489
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=44.28 E-value=12 Score=32.86 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 45 ~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999974
No 490
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=44.12 E-value=12 Score=32.33 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=14.4
Q ss_pred CCCEEEECCCCchhHHHh
Q 011605 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~l~~~~tG~GKT~~~ 86 (481)
+.-+.+.||.|+|||..+
T Consensus 25 g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp SEEEEEECSTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 334678999999999864
No 491
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=44.10 E-value=12 Score=33.35 Aligned_cols=15 Identities=33% Similarity=0.747 Sum_probs=13.1
Q ss_pred EEEECCCCchhHHHh
Q 011605 72 LCINSPTGSGKTLSY 86 (481)
Q Consensus 72 ~l~~~~tG~GKT~~~ 86 (481)
+.+.|++|+|||..+
T Consensus 34 i~I~G~sGsGKSTla 48 (290)
T 1odf_A 34 IFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999865
No 492
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=44.09 E-value=11 Score=32.88 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.2
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 25 ~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 466788999999999974
No 493
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=44.07 E-value=16 Score=27.63 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=29.8
Q ss_pred CCeEEEEecchhh--HHHHHHHHhhccccceeEEEcccccC
Q 011605 332 EEKCIVFTSSVES--THRLCTLLNHFGELRIKIKEYSGLQR 370 (481)
Q Consensus 332 ~~~~lVf~~s~~~--~~~l~~~L~~~~~~~~~~~~~~~~~~ 370 (481)
+.+++++|.+-.. +...+..|+..| +.+..+.|++.
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G---~~v~~l~GG~~ 108 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAG---FEAYELAGALE 108 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHT---CEEEEETTHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcC---CeEEEeCCcHH
Confidence 5689999999877 788999999887 66888888864
No 494
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=44.02 E-value=39 Score=30.30 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=51.0
Q ss_pred CCeEEEEecchhhHHHHHHHHhhcc-ccceeEEEcccccChHHHHHHHHHHhcCCceEEEEccc-c----cc-CCCCCCC
Q 011605 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M----TR-GMDVEGV 404 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~t~~-l----~~-Gvdl~~~ 404 (481)
+.++||.+++...+.++++.+++.+ ..+..+..++|+.+..+... .+. +.+|+|+|.- + .. .+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQIN---RVR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHH---HHT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHh---hcC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 6789999999999999999988754 33467788888887654332 222 3789999842 1 12 2455667
Q ss_pred cEEEEc
Q 011605 405 NNVVNY 410 (481)
Q Consensus 405 ~~Vi~~ 410 (481)
+.||.-
T Consensus 131 ~~iViD 136 (337)
T 2z0m_A 131 EIVIID 136 (337)
T ss_dssp SEEEEE
T ss_pred cEEEEE
Confidence 777753
No 495
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=43.20 E-value=11 Score=31.65 Aligned_cols=15 Identities=33% Similarity=0.213 Sum_probs=12.9
Q ss_pred CEEEECCCCchhHHH
Q 011605 71 DLCINSPTGSGKTLS 85 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~ 85 (481)
-.++.||+|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 368899999999975
No 496
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=42.92 E-value=10 Score=33.91 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.6
Q ss_pred CEEEECCCCchhHHHh
Q 011605 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~l~~~~tG~GKT~~~ 86 (481)
-+++.|++|+|||..+
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999864
No 497
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=42.86 E-value=8.9 Score=35.70 Aligned_cols=14 Identities=36% Similarity=0.480 Sum_probs=12.7
Q ss_pred EEEECCCCchhHHH
Q 011605 72 LCINSPTGSGKTLS 85 (481)
Q Consensus 72 ~l~~~~tG~GKT~~ 85 (481)
.++.|+||+|||..
T Consensus 28 ~vi~G~NGaGKT~i 41 (371)
T 3auy_A 28 VAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999975
No 498
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=42.84 E-value=90 Score=30.19 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=38.4
Q ss_pred ccchhhHHhHHhhhCCCCCCCCEEEECCCCchhHHHhHHHHHHHHHHhccCCccEEEEccc--HHHHHHHHHHHHH
Q 011605 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT--RDLALQVKDVFAA 123 (481)
Q Consensus 50 ~~~~~Q~~~~~~~~~~~~~~~~~l~~~~tG~GKT~~~~~~~~~~l~~~~~~~~~~lil~Pt--~~L~~q~~~~~~~ 123 (481)
+|-.-=.++++. +..+-+|+...+.++.|+|||..+ +..+.+....+..++|+.-- -.-+.++.+.+..
T Consensus 157 epl~TGiraID~-l~PigrGQR~~I~g~~g~GKT~La----l~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 157 TPLQTGIKAIDS-MIPIGRGQRELIIGDRQTGKTAIA----IDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp SEECCSCHHHHH-HSCEETTCBEEEEEETTSSHHHHH----HHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred cchhcCcccccc-ccccccCCEEEEEcCCCCCccHHH----HHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHh
Confidence 333333456665 445557999999999999999753 33444433333333444322 2223345555554
No 499
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=42.68 E-value=11 Score=33.35 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 46 ~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 466788999999999974
No 500
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=42.65 E-value=11 Score=32.80 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=15.2
Q ss_pred CCCCEEEECCCCchhHHH
Q 011605 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~l~~~~tG~GKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 30 ~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp TTCEEEEECCSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466688999999999974
Done!