Query 011607
Match_columns 481
No_of_seqs 266 out of 825
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 11:39:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jjm_A Glycosyl transferase, g 74.4 15 0.00052 35.9 10.2 89 301-393 296-384 (394)
2 3okp_A GDP-mannose-dependent a 73.4 14 0.00048 35.7 9.6 92 302-401 292-383 (394)
3 3c48_A Predicted glycosyltrans 71.0 31 0.0011 34.0 11.7 87 302-393 338-424 (438)
4 2gek_A Phosphatidylinositol ma 69.1 16 0.00056 35.5 9.0 97 299-403 293-389 (406)
5 3oy2_A Glycosyltransferase B73 67.5 18 0.00061 35.6 9.0 92 302-403 286-396 (413)
6 2x6q_A Trehalose-synthase TRET 65.2 26 0.0009 34.5 9.7 86 301-392 327-412 (416)
7 3qhp_A Type 1 capsular polysac 57.5 34 0.0012 28.8 7.8 74 303-382 88-162 (166)
8 2bfw_A GLGA glycogen synthase; 55.2 43 0.0015 29.0 8.3 69 303-376 129-198 (200)
9 2r60_A Glycosyl transferase, g 52.6 66 0.0023 32.5 10.4 88 302-393 371-458 (499)
10 2iw1_A Lipopolysaccharide core 50.6 22 0.00075 34.1 6.0 87 301-394 282-371 (374)
11 3s28_A Sucrose synthase 1; gly 40.2 63 0.0022 36.2 8.3 91 302-396 677-771 (816)
12 3fro_A GLGA glycogen synthase; 32.1 1.2E+02 0.0041 29.4 8.1 88 303-399 344-432 (439)
13 2dt7_B Splicing factor 3 subun 24.9 59 0.002 26.0 3.5 36 361-396 37-85 (85)
No 1
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=74.36 E-value=15 Score=35.90 Aligned_cols=89 Identities=9% Similarity=0.016 Sum_probs=61.0
Q ss_pred ccccchHHHHhcCCeeeeecCchhhhhhhhccCCceeEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHHhch
Q 011607 301 AWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEELKM 380 (481)
Q Consensus 301 ~~S~Rlk~LL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~L~~ 380 (481)
+++..+---|+||-.|+..... -..+.+.....=+-+..++ .++|.++|..+.++++..++++++|++++++..+.
T Consensus 296 ~~~~~~~EAma~G~PvI~~~~~---~~~e~v~~~~~g~~~~~~d-~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~ 371 (394)
T 2jjm_A 296 SFGLVLLEAMACGVPCIGTRVG---GIPEVIQHGDTGYLCEVGD-TTGVADQAIQLLKDEELHRNMGERARESVYEQFRS 371 (394)
T ss_dssp SCCHHHHHHHHTTCCEEEECCT---TSTTTCCBTTTEEEECTTC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCchHHHHHHhcCCCEEEecCC---ChHHHhhcCCceEEeCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCH
Confidence 3445556678889877776532 2233344433333344322 37899999999899999999999999999888888
Q ss_pred hHHHHHHHHHHHH
Q 011607 381 EYVYDYMFHLLNE 393 (481)
Q Consensus 381 ~~~~~Y~~~LL~e 393 (481)
+.+..-+..++.+
T Consensus 372 ~~~~~~~~~~~~~ 384 (394)
T 2jjm_A 372 EKIVSQYETIYYD 384 (394)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877755555543
No 2
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=73.39 E-value=14 Score=35.72 Aligned_cols=92 Identities=10% Similarity=0.016 Sum_probs=61.7
Q ss_pred cccchHHHHhcCCeeeeecCchhhhhhhhccCCceeEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHHhchh
Q 011607 302 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEELKME 381 (481)
Q Consensus 302 ~S~Rlk~LL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~L~~~ 381 (481)
++..+---|+||-.|+.... .-..+.+... .=+-+..++ .++|.++|..+.++++..++++++|++++++..+.+
T Consensus 292 ~~~~~~Ea~a~G~PvI~~~~---~~~~e~i~~~-~g~~~~~~d-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 366 (394)
T 3okp_A 292 LGIVYLEAQACGVPVIAGTS---GGAPETVTPA-TGLVVEGSD-VDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWE 366 (394)
T ss_dssp SCHHHHHHHHTTCCEEECSS---TTGGGGCCTT-TEEECCTTC-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTBHH
T ss_pred cCcHHHHHHHcCCCEEEeCC---CChHHHHhcC-CceEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 34445556888887777553 2333444444 333344322 388999999999999999999999999999989888
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 011607 382 YVYDYMFHLLNEYAKLLKFK 401 (481)
Q Consensus 382 ~~~~Y~~~LL~eYa~l~~~~ 401 (481)
.+..-+..++ .++.+-+
T Consensus 367 ~~~~~~~~~~---~~~~r~~ 383 (394)
T 3okp_A 367 IMGERLTNIL---QSEPRKL 383 (394)
T ss_dssp HHHHHHHHHH---HSCCC--
T ss_pred HHHHHHHHHH---HHhccCc
Confidence 7776555544 4454433
No 3
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=70.97 E-value=31 Score=34.03 Aligned_cols=87 Identities=7% Similarity=-0.057 Sum_probs=58.1
Q ss_pred cccchHHHHhcCCeeeeecCchhhhhhhhccCCceeEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHHhchh
Q 011607 302 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEELKME 381 (481)
Q Consensus 302 ~S~Rlk~LL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~L~~~ 381 (481)
++..+---|+|+-.|+..... -..+.+.....=+-+..++ .++|.++|..+.++++..++++++|++++++ .+.+
T Consensus 338 ~~~~~~Eama~G~PvI~~~~~---~~~e~i~~~~~g~~~~~~d-~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~s~~ 412 (438)
T 3c48_A 338 FGLVAMEAQASGTPVIAARVG---GLPIAVAEGETGLLVDGHS-PHAWADALATLLDDDETRIRMGEDAVEHART-FSWA 412 (438)
T ss_dssp SCHHHHHHHHTTCCEEEESCT---THHHHSCBTTTEEEESSCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHH
T ss_pred CchHHHHHHHcCCCEEecCCC---ChhHHhhCCCcEEECCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh-CCHH
Confidence 444455668888877776532 2333444444433344322 3789999999989999999999999999988 7777
Q ss_pred HHHHHHHHHHHH
Q 011607 382 YVYDYMFHLLNE 393 (481)
Q Consensus 382 ~~~~Y~~~LL~e 393 (481)
.+..-+..++.+
T Consensus 413 ~~~~~~~~~~~~ 424 (438)
T 3c48_A 413 ATAAQLSSLYND 424 (438)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666544444443
No 4
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=69.15 E-value=16 Score=35.50 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=65.9
Q ss_pred CcccccchHHHHhcCCeeeeecCchhhhhhhhccCCceeEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHHh
Q 011607 299 GYAWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEEL 378 (481)
Q Consensus 299 G~~~S~Rlk~LL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~L 378 (481)
+-+++..+---|+||-.|+.... .-+.+.+....+=+-+..++ .++|.++|..+.++++..++++++|+++++ ..
T Consensus 293 ~e~~~~~~~Ea~a~G~PvI~~~~---~~~~e~i~~~~~g~~~~~~d-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~-~~ 367 (406)
T 2gek_A 293 GESFGIVLVEAMAAGTAVVASDL---DAFRRVLADGDAGRLVPVDD-ADGMAAALIGILEDDQLRAGYVARASERVH-RY 367 (406)
T ss_dssp CCSSCHHHHHHHHHTCEEEECCC---HHHHHHHTTTTSSEECCTTC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHGG-GG
T ss_pred CCCCchHHHHHHHcCCCEEEecC---CcHHHHhcCCCceEEeCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-hC
Confidence 34455566677889998887664 23334455444433344322 378999999999999999999999999998 77
Q ss_pred chhHHHHHHHHHHHHHHHhhcCCCC
Q 011607 379 KMEYVYDYMFHLLNEYAKLLKFKPV 403 (481)
Q Consensus 379 ~~~~~~~Y~~~LL~eYa~l~~~~P~ 403 (481)
+.+.+..-+..+ |.+++.-++.
T Consensus 368 s~~~~~~~~~~~---~~~~~~~~~~ 389 (406)
T 2gek_A 368 DWSVVSAQIMRV---YETVSGAGIK 389 (406)
T ss_dssp BHHHHHHHHHHH---HHHHCCTTCC
T ss_pred CHHHHHHHHHHH---HHHHHhhccc
Confidence 777766655444 4556655543
No 5
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=67.51 E-value=18 Score=35.59 Aligned_cols=92 Identities=9% Similarity=0.040 Sum_probs=60.6
Q ss_pred cccchHHHHhcCCeeeeecCchhhhhhhhccCCce-------------------eEecCCCCCcccHHHHHHhchhcHHH
Q 011607 302 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRH-------------------YWPIRDKDKCKSIKFAVDWGNTHKQK 362 (481)
Q Consensus 302 ~S~Rlk~LL~~~SvVlk~~s~~~e~f~~~L~P~~H-------------------YVPv~~d~~~sDL~~~v~w~~~h~~~ 362 (481)
++.-+---|+||-.|+..+.. -..+.+....+ .++.. | .++|.++| .+.++++.
T Consensus 286 ~~~~~lEAma~G~PvI~s~~~---g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~-d--~~~la~~i-~l~~~~~~ 358 (413)
T 3oy2_A 286 FGLCSAEGAVLGKPLIISAVG---GADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGII-D--VDDLVEAF-TFFKDEKN 358 (413)
T ss_dssp SCHHHHHHHTTTCCEEEECCH---HHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEEC-C--HHHHHHHH-HHTTSHHH
T ss_pred CCcHHHHHHHcCCCEEEcCCC---ChHHHHccCcccccccccccccccccCcceeeCCC-C--HHHHHHHH-HHhcCHHH
Confidence 334445568888877776532 23344444444 44433 2 37899999 88889999
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhhcCCCC
Q 011607 363 AQEIGRAASNFIQEELKMEYVYDYMFHLLNEYAKLLKFKPV 403 (481)
Q Consensus 363 Aq~IA~~g~~fa~~~L~~~~~~~Y~~~LL~eYa~l~~~~P~ 403 (481)
.++++++|++++++..+.+.+..- ++.-|.+++.-++.
T Consensus 359 ~~~~~~~a~~~~~~~fs~~~~~~~---~~~~~~~~~~~~~~ 396 (413)
T 3oy2_A 359 RKEYGKRVQDFVKTKPTWDDISSD---IIDFFNSLLRVESR 396 (413)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHH---HHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHH---HHHHHHHHHhhcCC
Confidence 999999999999888888777664 44455667665543
No 6
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=65.16 E-value=26 Score=34.46 Aligned_cols=86 Identities=9% Similarity=0.028 Sum_probs=59.8
Q ss_pred ccccchHHHHhcCCeeeeecCchhhhhhhhccCCceeEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHHhch
Q 011607 301 AWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEELKM 380 (481)
Q Consensus 301 ~~S~Rlk~LL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~L~~ 380 (481)
+++..+---|+||-.|+..+.. -..+.+.....=+-+. |. ++|.++|..+.++++..++++++|++++++..+.
T Consensus 327 ~~~~~~lEAma~G~PvI~~~~~---g~~e~i~~~~~g~l~~-d~--~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 400 (416)
T 2x6q_A 327 GFGLTVTEAMWKGKPVIGRAVG---GIKFQIVDGETGFLVR-DA--NEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFII 400 (416)
T ss_dssp SSCHHHHHHHHTTCCEEEESCH---HHHHHCCBTTTEEEES-SH--HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBH
T ss_pred CCccHHHHHHHcCCCEEEccCC---CChhheecCCCeEEEC-CH--HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCH
Confidence 3444556678899988876632 2233344443333233 43 7899999999899999999999999999988888
Q ss_pred hHHHHHHHHHHH
Q 011607 381 EYVYDYMFHLLN 392 (481)
Q Consensus 381 ~~~~~Y~~~LL~ 392 (481)
+.+..-+..++.
T Consensus 401 ~~~~~~~~~~~~ 412 (416)
T 2x6q_A 401 TKHMERYLDILN 412 (416)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 877665555543
No 7
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=57.50 E-value=34 Score=28.81 Aligned_cols=74 Identities=8% Similarity=0.075 Sum_probs=46.8
Q ss_pred ccchHHHHhcCC-eeeeecCchhhhhhhhccCCceeEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHHhchh
Q 011607 303 SVSEKYILACDS-MTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEELKME 381 (481)
Q Consensus 303 S~Rlk~LL~~~S-vVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~L~~~ 381 (481)
+..+---|+||- .|+... -..-....+.....+++.. | .++|.+++..+.++++..++++++|++++ +..+.+
T Consensus 88 ~~~~~Eama~G~vPvi~~~--~~~~~~~~~~~~~~~~~~~-~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~s~~ 161 (166)
T 3qhp_A 88 AIACLEAISVGIVPVIANS--PLSATRQFALDERSLFEPN-N--AKDLSAKIDWWLENKLERERMQNEYAKSA-LNYTLE 161 (166)
T ss_dssp CHHHHHHHHTTCCEEEECC--TTCGGGGGCSSGGGEECTT-C--HHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HHHC--
T ss_pred cHHHHHHHhcCCCcEEeeC--CCCchhhhccCCceEEcCC-C--HHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHCChh
Confidence 334445688897 666622 1112222334444555543 2 37899999999999999999999999998 555544
Q ss_pred H
Q 011607 382 Y 382 (481)
Q Consensus 382 ~ 382 (481)
.
T Consensus 162 ~ 162 (166)
T 3qhp_A 162 N 162 (166)
T ss_dssp -
T ss_pred h
Confidence 3
No 8
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=55.24 E-value=43 Score=29.05 Aligned_cols=69 Identities=3% Similarity=-0.090 Sum_probs=47.1
Q ss_pred ccchHHHHhcCCeeeeecCchhhhhhhhccCCceeEecCCCCCcccHHHHHHhchh-cHHHHHHHHHHHHHHHHH
Q 011607 303 SVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNT-HKQKAQEIGRAASNFIQE 376 (481)
Q Consensus 303 S~Rlk~LL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~-h~~~Aq~IA~~g~~fa~~ 376 (481)
+..+---|+|+-.|+..... .+.+.+ ...+-+-+..++ .++|.++|..+.+ +++..++++++|++++++
T Consensus 129 ~~~~~Ea~a~G~PvI~~~~~---~~~e~~-~~~~g~~~~~~~-~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~ 198 (200)
T 2bfw_A 129 GLVALEAMCLGAIPIASAVG---GLRDII-TNETGILVKAGD-PGELANAILKALELSRSDLSKFRENCKKRAMS 198 (200)
T ss_dssp CHHHHHHHHTTCEEEEESCH---HHHHHC-CTTTCEEECTTC-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCCEEEeCCC---ChHHHc-CCCceEEecCCC-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 34455567888888876543 223333 333333344322 3789999999999 999999999999999876
No 9
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=52.58 E-value=66 Score=32.54 Aligned_cols=88 Identities=7% Similarity=-0.032 Sum_probs=58.7
Q ss_pred cccchHHHHhcCCeeeeecCchhhhhhhhccCCceeEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHHhchh
Q 011607 302 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEELKME 381 (481)
Q Consensus 302 ~S~Rlk~LL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~L~~~ 381 (481)
++..+---|+||-.|+..+.. -..+.+....+=+-+..++ .++|.++|..+.++++..++++++|++++.+..+.+
T Consensus 371 ~~~~~lEAma~G~PvI~s~~~---g~~e~v~~~~~g~l~~~~d-~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~ 446 (499)
T 2r60_A 371 FGLAPVEAMASGLPAVVTRNG---GPAEILDGGKYGVLVDPED-PEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQ 446 (499)
T ss_dssp CCSHHHHHHHTTCCEEEESSB---HHHHHTGGGTSSEEECTTC-HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHH
T ss_pred CCcHHHHHHHcCCCEEEecCC---CHHHHhcCCceEEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 344455568888888776532 2223333333222222222 378999999998999999999999999999988888
Q ss_pred HHHHHHHHHHHH
Q 011607 382 YVYDYMFHLLNE 393 (481)
Q Consensus 382 ~~~~Y~~~LL~e 393 (481)
.+..-+..++.+
T Consensus 447 ~~~~~~~~~y~~ 458 (499)
T 2r60_A 447 ETARGYLEVIQE 458 (499)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777655555444
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=50.58 E-value=22 Score=34.11 Aligned_cols=87 Identities=6% Similarity=-0.052 Sum_probs=56.3
Q ss_pred ccccchHHHHhcCCeeeeecC-chhhhhhhhccCCceeEecC--CCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHH
Q 011607 301 AWSVSEKYILACDSMTLLVKP-YFHDFFIRYLQPLRHYWPIR--DKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEE 377 (481)
Q Consensus 301 ~~S~Rlk~LL~~~SvVlk~~s-~~~e~f~~~L~P~~HYVPv~--~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~ 377 (481)
+++..+---|+|+-.|+..+. ...|... ....=+-+. .| .++|.+++..+.++++..++++++|+++++++
T Consensus 282 ~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~----~~~~g~~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 355 (374)
T 2iw1_A 282 AAGIVLLEAITAGLPVLTTAVCGYAHYIA----DANCGTVIAEPFS--QEQLNEVLRKALTQSPLRMAWAENARHYADTQ 355 (374)
T ss_dssp SSCHHHHHHHHHTCCEEEETTSTTTHHHH----HHTCEEEECSSCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHCCCCEEEecCCCchhhhc----cCCceEEeCCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh
Confidence 344445566888887777653 2333332 222222222 23 37899999999899999999999999999876
Q ss_pred hchhHHHHHHHHHHHHH
Q 011607 378 LKMEYVYDYMFHLLNEY 394 (481)
Q Consensus 378 L~~~~~~~Y~~~LL~eY 394 (481)
+...+..-+..+|.+|
T Consensus 356 -~~~~~~~~~~~~l~~~ 371 (374)
T 2iw1_A 356 -DLYSLPEKAADIITGG 371 (374)
T ss_dssp -CCSCHHHHHHHHHHCC
T ss_pred -hHHHHHHHHHHHHHHh
Confidence 5555555555555543
No 11
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=40.23 E-value=63 Score=36.20 Aligned_cols=91 Identities=10% Similarity=0.011 Sum_probs=60.0
Q ss_pred cccchHHHHhcCCeeeeecCchhhhhhhhccCCceeEecCCCCCcccHHHHHHhc----hhcHHHHHHHHHHHHHHHHHH
Q 011607 302 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWG----NTHKQKAQEIGRAASNFIQEE 377 (481)
Q Consensus 302 ~S~Rlk~LL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~----~~h~~~Aq~IA~~g~~fa~~~ 377 (481)
++.-+---|+||-.|+..... -..+.+....+=+-+...+ .++|.++|..+ ..+++..++++++|++++.+.
T Consensus 677 fglvllEAMA~G~PVIasd~G---G~~EiV~dg~~Gllv~p~D-~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~ 752 (816)
T 3s28_A 677 FGLTVVEAMTCGLPTFATCKG---GPAEIIVHGKSGFHIDPYH-GDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEK 752 (816)
T ss_dssp SCHHHHHHHHTTCCEEEESSB---THHHHCCBTTTBEEECTTS-HHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHcCCCEEEeCCC---ChHHHHccCCcEEEeCCCC-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 333344568888877776432 1223344444433344322 36788888554 389999999999999999998
Q ss_pred hchhHHHHHHHHHHHHHHH
Q 011607 378 LKMEYVYDYMFHLLNEYAK 396 (481)
Q Consensus 378 L~~~~~~~Y~~~LL~eYa~ 396 (481)
.+.+.+..-+..+...|..
T Consensus 753 fSwe~~a~~ll~lY~~~g~ 771 (816)
T 3s28_A 753 YTWQIYSQRLLTLTGVYGF 771 (816)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhH
Confidence 8888877766666666543
No 12
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=32.09 E-value=1.2e+02 Score=29.40 Aligned_cols=88 Identities=5% Similarity=-0.012 Sum_probs=56.7
Q ss_pred ccchHHHHhcCCeeeeecCchhhhhhhhccCCceeEecCCCCCcccHHHHHHhchh-cHHHHHHHHHHHHHHHHHHhchh
Q 011607 303 SVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNT-HKQKAQEIGRAASNFIQEELKME 381 (481)
Q Consensus 303 S~Rlk~LL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~-h~~~Aq~IA~~g~~fa~~~L~~~ 381 (481)
+..+---|+||-.|+..... -..+.+....-+ -+..++ .++|.++|..+.+ +++..++++++|++++ +..+.+
T Consensus 344 ~~~~~EAma~G~Pvi~s~~~---~~~e~~~~~~g~-~~~~~d-~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-~~~s~~ 417 (439)
T 3fro_A 344 GLVALEAMCLGAIPIASAVG---GLRDIITNETGI-LVKAGD-PGELANAILKALELSRSDLSKFRENCKKRA-MSFSWE 417 (439)
T ss_dssp CHHHHHHHHTTCEEEEESST---HHHHHCCTTTCE-EECTTC-HHHHHHHHHHHHHHTTTTTHHHHHHHHHHH-HTSCHH
T ss_pred cHHHHHHHHCCCCeEEcCCC---CcceeEEcCceE-EeCCCC-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-hhCcHH
Confidence 33344568899888876532 233344344223 233322 3789999998877 8999999999999999 557777
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 011607 382 YVYDYMFHLLNEYAKLLK 399 (481)
Q Consensus 382 ~~~~Y~~~LL~eYa~l~~ 399 (481)
.+.. +++.-|.++++
T Consensus 418 ~~~~---~~~~~~~~~~~ 432 (439)
T 3fro_A 418 KSAE---RYVKAYTGSID 432 (439)
T ss_dssp HHHH---HHHHHHHTCSC
T ss_pred HHHH---HHHHHHHHHHH
Confidence 6655 34444555543
No 13
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=24.88 E-value=59 Score=26.03 Aligned_cols=36 Identities=25% Similarity=0.519 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHH------------Hhch-hHHHHHHHHHHHHHHH
Q 011607 361 QKAQEIGRAASNFIQE------------ELKM-EYVYDYMFHLLNEYAK 396 (481)
Q Consensus 361 ~~Aq~IA~~g~~fa~~------------~L~~-~~~~~Y~~~LL~eYa~ 396 (481)
..|+=+|++|.+|... +|++ +....|+.+++.+|.+
T Consensus 37 ~TA~FVArnG~~Fe~~l~~re~~NpqF~FL~p~h~~~~yy~~~v~~Y~~ 85 (85)
T 2dt7_B 37 LTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTK 85 (85)
T ss_dssp HHHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHCC
T ss_pred HHHHHHhhccHHHHHHHHHhcCCCCceeeCCCCCCchHHHHHHHHHHhC
Confidence 3488888888887643 3444 3588999999999964
Done!