Query 011607
Match_columns 481
No_of_seqs 266 out of 825
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 11:39:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011607.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011607hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iw1a1 c.87.1.8 (A:2-371) Lip 37.0 30 0.0022 30.1 6.8 71 302-377 282-354 (370)
2 d2bisa1 c.87.1.8 (A:1-437) Gly 32.4 39 0.0029 30.5 7.0 88 303-399 342-430 (437)
3 d2bfwa1 c.87.1.8 (A:218-413) G 31.2 61 0.0044 26.3 7.5 71 301-376 123-194 (196)
4 d2dt7b1 a.217.1.1 (B:134-217) 19.5 36 0.0026 25.2 3.1 35 362-396 37-84 (84)
5 d1veha_ d.52.8.1 (A:) HIRA-int 17.7 64 0.0047 24.2 4.3 48 115-165 40-89 (92)
6 d2f9fa1 c.87.1.8 (A:2-167) Fir 13.2 93 0.0067 24.4 4.5 66 301-372 98-165 (166)
7 d2nxoa1 c.94.1.1 (A:5-281) Hyp 11.1 48 0.0035 28.7 2.1 22 348-369 204-225 (277)
8 d2dt6a1 a.217.1.1 (A:48-110) S 10.6 1.3E+02 0.0096 20.6 4.0 39 361-399 8-59 (63)
9 d1s16a1 d.14.1.3 (A:1217-1383) 10.5 1E+02 0.0076 25.4 4.0 25 354-378 140-164 (167)
10 d1kija1 d.14.1.3 (A:221-392) D 9.5 1.3E+02 0.0095 24.8 4.2 25 354-378 139-163 (172)
No 1
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=37.02 E-value=30 Score=30.06 Aligned_cols=71 Identities=6% Similarity=-0.024 Sum_probs=47.5
Q ss_pred cccchHHHHhcCCeeeeecCc-hhhhhhhhccCCce-eEecCCCCCcccHHHHHHhchhcHHHHHHHHHHHHHHHHHH
Q 011607 302 WSVSEKYILACDSMTLLVKPY-FHDFFIRYLQPLRH-YWPIRDKDKCKSIKFAVDWGNTHKQKAQEIGRAASNFIQEE 377 (481)
Q Consensus 302 ~S~Rlk~LL~~~SvVlk~~s~-~~e~f~~~L~P~~H-YVPv~~d~~~sDL~~~v~w~~~h~~~Aq~IA~~g~~fa~~~ 377 (481)
++..+---|+||-.|+..+.. ..| .+....+ ++-++..+ .++|.++|.-+.++++..++++++|+++++++
T Consensus 282 ~~~~~~EAma~G~PvI~s~~~g~~e----~i~~~~~G~l~~~~~d-~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~ 354 (370)
T d2iw1a1 282 AGIVLLEAITAGLPVLTTAVCGYAH----YIADANCGTVIAEPFS-QEQLNEVLRKALTQSPLRMAWAENARHYADTQ 354 (370)
T ss_dssp SCHHHHHHHHHTCCEEEETTSTTTH----HHHHHTCEEEECSSCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS
T ss_pred ccceeeecccCCeeEEEeCCCChHH----HhcCCCceEEEcCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 444455668888877765422 333 2333444 33233222 37899999999899999999999999999765
No 2
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=32.38 E-value=39 Score=30.51 Aligned_cols=88 Identities=5% Similarity=-0.007 Sum_probs=54.8
Q ss_pred ccchHHHHhcCCeeeeecCchhhhhhhhccCCceeEecCCCCCcccHHHHHHhch-hcHHHHHHHHHHHHHHHHHHhchh
Q 011607 303 SVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGN-THKQKAQEIGRAASNFIQEELKME 381 (481)
Q Consensus 303 S~Rlk~LL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~-~h~~~Aq~IA~~g~~fa~~~L~~~ 381 (481)
+..+---|+||-.|+.....- ..+.+.....|+ +...+ .++|.++|..+. .+++..++++++|++.+++ ++.+
T Consensus 342 ~~~~~Eama~G~Pvi~~~~g~---~~e~i~~~~G~~-~~~~d-~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~-~s~~ 415 (437)
T d2bisa1 342 GLVALEAMCLGAIPIASAVGG---LRDIITNETGIL-VKAGD-PGELANAILKALELSRSDLSKFRENCKKRAMS-FSWE 415 (437)
T ss_dssp CHHHHHHHTTTCEEEEESCTT---HHHHCCTTTCEE-ECTTC-HHHHHHHHHHHHTTTTSCTHHHHHHHHHHHHH-SCHH
T ss_pred chHHHHHHHCCCCEEEeCCCC---cHHhEECCcEEE-ECCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-CCHH
Confidence 333445588999888765331 122233333443 23222 378889997754 4778899999999999864 6877
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 011607 382 YVYDYMFHLLNEYAKLLK 399 (481)
Q Consensus 382 ~~~~Y~~~LL~eYa~l~~ 399 (481)
.+.. +++.-|.++++
T Consensus 416 ~~a~---~~~~iY~~~i~ 430 (437)
T d2bisa1 416 KSAE---RYVKAYTGSID 430 (437)
T ss_dssp HHHH---HHHHHHHTCSC
T ss_pred HHHH---HHHHHHHHHHH
Confidence 7654 45555766653
No 3
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=31.22 E-value=61 Score=26.31 Aligned_cols=71 Identities=3% Similarity=-0.049 Sum_probs=46.5
Q ss_pred ccccchHHHHhcCCeeeeecCchhhhhhhhccCCceeEecCCCCCcccHHHHHHhchh-cHHHHHHHHHHHHHHHHH
Q 011607 301 AWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNT-HKQKAQEIGRAASNFIQE 376 (481)
Q Consensus 301 ~~S~Rlk~LL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~sDL~~~v~w~~~-h~~~Aq~IA~~g~~fa~~ 376 (481)
+++..+.--|+|+-+|+..... ...+.+.....|+ +..++ ..+|.++|..+.. ..+..++|+++|++.+.+
T Consensus 123 ~~~~~~~Eam~~G~pvI~~~~~---~~~e~i~~~~g~~-~~~~~-~~~l~~~i~~~l~~~~~~~~~~~~~a~~~a~~ 194 (196)
T d2bfwa1 123 PFGLVALEAMCLGAIPIASAVG---GLRDIITNETGIL-VKAGD-PGELANAILKALELSRSDLSKFRENCKKRAMS 194 (196)
T ss_dssp SSCHHHHHHHHTTCEEEEESCH---HHHHHCCTTTCEE-ECTTC-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhcCceeeecCCC---ccceeecCCceee-ECCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 3556667789999999987642 2233333333343 44332 3788888876544 677889999999998865
No 4
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.55 E-value=36 Score=25.23 Aligned_cols=35 Identities=26% Similarity=0.549 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHH------------Hhch-hHHHHHHHHHHHHHHH
Q 011607 362 KAQEIGRAASNFIQE------------ELKM-EYVYDYMFHLLNEYAK 396 (481)
Q Consensus 362 ~Aq~IA~~g~~fa~~------------~L~~-~~~~~Y~~~LL~eYa~ 396 (481)
.|+-+|++|.+|-.. +|++ .....|+.++|.+|++
T Consensus 37 tA~fVa~~G~~fe~~l~~~~~~Np~F~FL~~~~~~~~yY~~lv~~Y~~ 84 (84)
T d2dt7b1 37 TAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTK 84 (84)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCHHHHHHHHHcccCCCceeccCCCCcCcHHHHHHHHHHhC
Confidence 366777777776533 2332 3568899999999974
No 5
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.66 E-value=64 Score=24.20 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=33.6
Q ss_pred EEEECCEEEEEeccccccc-hhHHHH-HHHHHHHHhcCCCCCCeEEEeeCCCC
Q 011607 115 LILVNNKVYIHKYKQSIQT-RDVFTI-WGILQLLRKYPGRLPDLELMFDCDDR 165 (481)
Q Consensus 115 v~I~~G~lyv~~~~~~~~t-R~~~tl-~~il~llr~~~~~LPDvef~~n~~D~ 165 (481)
+-|.+|.|||.-.+.|-.- -...|+ .+|.++|+. .+|++.-+.++.|.
T Consensus 40 v~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~---~vpev~~V~~v~~~ 89 (92)
T d1veha_ 40 RGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF---YIPEVEGVEQVSGP 89 (92)
T ss_dssp EEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHH---HCSSCCCEEECSCS
T ss_pred EEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHH---HCCCcceEEEcCCC
Confidence 4688999999987755321 112334 577788886 58998888888774
No 6
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=13.24 E-value=93 Score=24.41 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=39.4
Q ss_pred ccccchHHHHhcCCeeeeecCchhhhhhhhccCCce-eEecCCCCCcccHHHHHHhchhcHHH-HHHHHHHHHH
Q 011607 301 AWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRH-YWPIRDKDKCKSIKFAVDWGNTHKQK-AQEIGRAASN 372 (481)
Q Consensus 301 ~~S~Rlk~LL~~~SvVlk~~s~~~e~f~~~L~P~~H-YVPv~~d~~~sDL~~~v~w~~~h~~~-Aq~IA~~g~~ 372 (481)
+++..+---|+||-.|+...... +.+.+..... |+ +..|. +++.+++..+.+++++ .+.+.++|++
T Consensus 98 ~~~~~~~Ea~~~g~pvi~s~~~~---~~e~i~~~~~g~~-~~~d~--~~~~~~i~~l~~~~~~~~~~~~~~a~~ 165 (166)
T d2f9fa1 98 DFGLTPIEAMASGKPVIAVNEGG---FKETVINEKTGYL-VNADV--NEIIDAMKKVSKNPDKFKKDCFRRAKE 165 (166)
T ss_dssp CSCHHHHHHHHTTCCEEEESSHH---HHHHCCBTTTEEE-ECSCH--HHHHHHHHHHHHCTTTTHHHHHHHHHT
T ss_pred cccccccccccccccceeecCCc---ceeeecCCccccc-CCCCH--HHHHHHHHHHHhCHHHHHHHHHHHHhC
Confidence 34444566788888888776532 2233444333 33 23343 7899999998888754 3445555554
No 7
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.11 E-value=48 Score=28.70 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=17.4
Q ss_pred cHHHHHHhchhcHHHHHHHHHH
Q 011607 348 SIKFAVDWGNTHKQKAQEIGRA 369 (481)
Q Consensus 348 DL~~~v~w~~~h~~~Aq~IA~~ 369 (481)
-+.++++|+++||++|.+|+.+
T Consensus 204 a~~~a~~~~~~~p~ea~~~~a~ 225 (277)
T d2nxoa1 204 AFLASRNLSLEEVEKVAEQAAR 225 (277)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHhCHHHHHHHHHH
Confidence 4667788999999998887654
No 8
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.57 E-value=1.3e+02 Score=20.58 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHH------------Hhchh-HHHHHHHHHHHHHHHhhc
Q 011607 361 QKAQEIGRAASNFIQE------------ELKME-YVYDYMFHLLNEYAKLLK 399 (481)
Q Consensus 361 ~~Aq~IA~~g~~fa~~------------~L~~~-~~~~Y~~~LL~eYa~l~~ 399 (481)
..|+-||++|.+|-.. +|.+. ....|+...|.+|..--.
T Consensus 8 ~tA~fVak~G~~fE~~l~~~e~~np~F~FL~~~~~~h~YY~~~l~~~~~g~~ 59 (63)
T d2dt6a1 8 KTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKA 59 (63)
T ss_dssp HHHHHHHHHCTHHHHHHHHHSTTCGGGGGGSTTSTTHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHhcHHHHHHHHHhccCCCcCcCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 4578888888877532 34444 367999999999976433
No 9
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=10.55 E-value=1e+02 Score=25.38 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=20.6
Q ss_pred HhchhcHHHHHHHHHHHHHHHHHHh
Q 011607 354 DWGNTHKQKAQEIGRAASNFIQEEL 378 (481)
Q Consensus 354 ~w~~~h~~~Aq~IA~~g~~fa~~~L 378 (481)
.|++.||+.|+.|.+.+..-++..+
T Consensus 140 ~~l~~np~~a~~i~~k~i~~~~~R~ 164 (167)
T d1s16a1 140 LWLNQNVQAAELLAEMAISSAQRRM 164 (167)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999998887665443
No 10
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=9.46 E-value=1.3e+02 Score=24.81 Aligned_cols=25 Identities=12% Similarity=-0.023 Sum_probs=20.6
Q ss_pred HhchhcHHHHHHHHHHHHHHHHHHh
Q 011607 354 DWGNTHKQKAQEIGRAASNFIQEEL 378 (481)
Q Consensus 354 ~w~~~h~~~Aq~IA~~g~~fa~~~L 378 (481)
.|++.||+.|+.|.+.+..-++..+
T Consensus 139 ~~L~~np~~a~~I~~k~~~~~~aR~ 163 (172)
T d1kija1 139 EILEENPRIAKAVYEKALRAAQARE 163 (172)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999998887665543
Done!