BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011608
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/472 (40%), Positives = 276/472 (58%), Gaps = 16/472 (3%)
Query: 1 MQTTKT-HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPN- 58
M+ +KT H+A++ SPGMGH IP++E KR + VT FV+A + ++Q L +
Sbjct: 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVT-FVIAGEGPPSKAQRTVLDSL 59
Query: 59 PHLFNIVSLPPVDISALLDADASIVIKIIFMMRESLPALRSSISTLKPR---PTALFADL 115
P + V LPPVD++ L + I +I + S P LR + PTAL DL
Sbjct: 60 PSSISSVFLPPVDLTDL-SSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDL 118
Query: 116 FGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGRKQPLMIPGCRSVR 175
FGT+AF +A EF + Y++ + A L+ ++ P +D+ + E +PLM+PGC V
Sbjct: 119 FGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPVA 178
Query: 176 FQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRD-GISKLPPIY 234
+D L+ D KD + L A+GIL+NT+ +LEP + +L++ G+ K PP+Y
Sbjct: 179 GKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDK-PPVY 237
Query: 235 PIGPVVRX-XXXXXXXXXXXXXXWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQ 293
P+GP+V WLD QP SV+YVSFG GGTL+ Q+ E+A GL S+
Sbjct: 238 PVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSE 297
Query: 294 QRFIWVVRPPMDNDVSGSFFKVGDGSSDGTP-DYLPDGFLTRNAKMGLVVPDWAPQVEIL 352
QRF+WV+R P + S+F D S P +LP GFL R K G V+P WAPQ ++L
Sbjct: 298 QRFLWVIRSP-SGIANSSYF---DSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVL 353
Query: 353 GHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTEN 412
H S GGFL+HCGWNSTLES+V+G+PLI WPLYAEQKMNA +L+E++ A+RP +
Sbjct: 354 AHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAG-DDG 412
Query: 413 LVKREEIEMMVRRILVDKEGQALRSRVKELXXXXXXXXXXXXXXYNALSQVA 464
LV+REE+ +V+ ++ +EG+ +R+++KEL ALS VA
Sbjct: 413 LVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVA 464
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 133/461 (28%), Positives = 223/461 (48%), Gaps = 52/461 (11%)
Query: 3 TTKTHIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVAT-----DTSTVQSQLRNL 56
+ + + +PG+GH LE K + + +T+F + S ++S L +
Sbjct: 7 NKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQ 66
Query: 57 PNPHLFNI--VSLPPVDISALLDADASIVIKIIFMMRESLPALRSSIST-LKPRPTALFA 113
P L ++ V PP ++ S I+ + +P ++++I T L + L
Sbjct: 67 PQIQLIDLPEVEPPPQELLK------SPEFYILTFLESLIPHVKATIKTILSNKVVGLVL 120
Query: 114 DLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGR----KQPLMIP 169
D F + +EF + Y+++ SN FL+ + ++ R EE + Q L IP
Sbjct: 121 DFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLML---SLKNRQIEEVFDDSDRDHQLLNIP 177
Query: 170 GCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISK 229
G + + L KD + Y ++ GI++NT+ DLE +++ +L D K
Sbjct: 178 GISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEK 237
Query: 230 LPPIYPIGPVV----RXXXXXXXXXXXXXXXWLDMQPTESVIYVSFGGGG-TLSANQMIE 284
+PPIY +GP++ + WLD QP +SV+++ FG G + +Q+ E
Sbjct: 238 IPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIRE 297
Query: 285 VAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGL-VVP 343
+A GL+ S RF+W S+ P+GFL G ++
Sbjct: 298 IALGLKHSGVRFLW--------------------SNSAEKKVFPEGFLEWMELEGKGMIC 337
Query: 344 DWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGV-- 401
WAPQVE+L H ++GGF+SHCGWNS LES+ GVP++ WP+YAEQ++NA L +E GV
Sbjct: 338 GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGL 397
Query: 402 AVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKEL 442
+R + ++V EEIE ++ L+DK+ + +V+E+
Sbjct: 398 GLRVDYRKGSDVVAAEEIEKGLKD-LMDKD-SIVHKKVQEM 436
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 132/459 (28%), Positives = 221/459 (48%), Gaps = 48/459 (10%)
Query: 3 TTKTHIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVAT-----DTSTVQSQLRNL 56
+ + + +PG+GH LE K + + +T+F + S ++S L +
Sbjct: 7 NKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQ 66
Query: 57 PNPHLFNIVSLPPVDISALLDADASIVIKIIFMMRESLPALRSSIST-LKPRPTALFADL 115
P L ++ + P L S I+ + +P ++++I T L + L D
Sbjct: 67 PQIQLIDLPEVEPPPQELL----KSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDF 122
Query: 116 FGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGR----KQPLMIPGC 171
F + +EF + Y+++ SN FL+ + ++ R EE + Q L IPG
Sbjct: 123 FCVSMIDVGNEFGIPSYLFLTSNVGFLSLML---SLKNRQIEEVFDDSDRDHQLLNIPGI 179
Query: 172 RSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLP 231
+ + L KD + Y ++ GI++NT+ DLE +++ +L D K+P
Sbjct: 180 SNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIP 239
Query: 232 PIYPIGPVV----RXXXXXXXXXXXXXXXWLDMQPTESVIYVSFGGGG-TLSANQMIEVA 286
PIY +GP++ + WLD QP +SV+++ FG G + +Q+ E+A
Sbjct: 240 PIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIA 299
Query: 287 WGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGL-VVPDW 345
GL+ S RF+W S+ P+GFL G ++ W
Sbjct: 300 LGLKHSGVRFLW--------------------SNSAEKKVFPEGFLEWMELEGKGMICGW 339
Query: 346 APQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGV--AV 403
APQVE+L H ++GGF+SHCGWNS LES+ GVP++ WP+YAEQ++NA L +E GV +
Sbjct: 340 APQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGL 399
Query: 404 RPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKEL 442
R + ++V EEIE ++ L+DK+ + +V+E+
Sbjct: 400 RVDYRKGSDVVAAEEIEKGLKD-LMDKD-SIVHKKVQEM 436
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 130/497 (26%), Positives = 220/497 (44%), Gaps = 65/497 (13%)
Query: 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLF-- 62
K H+ ++ P GH P+ +L K + F +T +T +L P F
Sbjct: 8 KPHVVMIPYPVQGHINPLFKLAKLLHLRG-FHITF----VNTEYNHKRLLKSRGPKAFDG 62
Query: 63 ----NIVSLP----PVDISALLDADASIVIKII---FMMRESLPALRSSISTLKPRPTAL 111
N S+P P++ + D + + + F+ R + ST P T L
Sbjct: 63 FTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCL 122
Query: 112 FADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKR----LQEEHYGRKQPL- 166
+D + Q A+EFE+ +Y +S+A L ++F + +R ++E Y L
Sbjct: 123 VSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLE 182
Query: 167 ----MIPGCRSVRFQDTLEAF--TDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTL 220
IPG ++ R +D ++ T+P D + + ++ + + IL+NT+ +LE +
Sbjct: 183 TKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVI 242
Query: 221 ASLRDGISKLPPIYPIGPV------------VRXXXXXXXXXXXXXXXWLDMQPTESVIY 268
+L S +P IYPIGP+ + WL+ + SV+Y
Sbjct: 243 NALS---STIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVY 299
Query: 269 VSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLP 328
V+FG ++ Q++E AWGL ++ F+W++RP D + GS
Sbjct: 300 VNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRP--DLVIGGSVI-------------FS 344
Query: 329 DGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQ 388
F A GL+ W PQ ++L H S+GGFL+HCGWNST ESI GVP++ WP +A+Q
Sbjct: 345 SEFTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQ 403
Query: 389 KMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELXXXXXX 448
+ + E + M + VKREE+ ++ ++ +G+ ++ + EL
Sbjct: 404 PTDCRFICNEWEIG-----MEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEE 458
Query: 449 XXXXXXXXYNALSQVAK 465
Y L++V K
Sbjct: 459 NTRPGGCSYMNLNKVIK 475
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/342 (29%), Positives = 160/342 (46%), Gaps = 33/342 (9%)
Query: 107 RP-TALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHY-GRKQ 164
RP + L AD F A +A E + + + L+ +Y I +++ GR+
Sbjct: 111 RPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGRED 170
Query: 165 PLM--IPGCRSVRFQDTLEAFTDPK-DQLFDEYL-RIGLEMVTADGILINTWEDLEPTTL 220
L+ IPG VRF+D E + LF L R+G + A + IN++E+L+ +
Sbjct: 171 ELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLT 230
Query: 221 ASLRDGISKLPPIYPIGPVVRXXXXXXXXXXXXXXXWLDMQPTESVIYVSFGGGGTLSAN 280
L+ SKL IGP WL + SV+Y+SFG T
Sbjct: 231 NDLK---SKLKTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPA 287
Query: 281 QMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGL 340
+++ ++ LE S+ FIW +R D +LP+GFL + G+
Sbjct: 288 EVVALSEALEASRVPFIWSLR-------------------DKARVHLPEGFLEKTRGYGM 328
Query: 341 VVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELG 400
VVP WAPQ E+L H +VG F++HCGWNS ES+ GVPLI P + +Q++N M+ + L
Sbjct: 329 VVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLE 387
Query: 401 VAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKEL 442
+ VR + + + +IL ++G+ LR ++ L
Sbjct: 388 IGVRIE----GGVFTKSGLMSCFDQILSQEKGKKLRENLRAL 425
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 126/445 (28%), Positives = 187/445 (42%), Gaps = 41/445 (9%)
Query: 7 HIALLASPGMGHFIPVLELGKRFATQN---DFQVTIFVVATDTSTVQSQLRNLPNPHLFN 63
H+A+LA P H P+L L K+ AT+ F DT +S LPN +N
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSN-EFLPNIKYYN 73
Query: 64 IVSLPPVDISALLDADASIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQI 123
+ P + + I + I M + +++ T L D F +
Sbjct: 74 VHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADL 133
Query: 124 ADEFEMLKYVYIASNAWFLAATIYFPTI-DKRLQEEHYGRKQPLMIPGCRSVRFQDTLEA 182
A+E + L +Y I +K +E + K ++PG ++ D E
Sbjct: 134 AEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPGFPELKASDLPEG 193
Query: 183 FTDPKDQLFDEYL-RIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPIGPVVR 241
D F L ++GLE+ A+ + IN++ + P L SK + +GP
Sbjct: 194 VIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELN---SKFKLLLNVGPFNL 250
Query: 242 XXXXXXXXXXXXXXXWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVR 301
WLD SV+Y+SFG T +++ +A LE FIW R
Sbjct: 251 TTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFR 310
Query: 302 PPMDNDVSGSFFKVGDGSSDGTP-DYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGF 360
G P + LP GFL R G +V WAPQVEIL H+SVG F
Sbjct: 311 --------------------GDPKEKLPKGFLERTKTKGKIVA-WAPQVEILKHSSVGVF 349
Query: 361 LSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAE---ELGVAVRPNEMPTENLVKRE 417
L+H GWNS LE IV GVP+I P + +Q +N T+L E E+GV V + E++ K
Sbjct: 350 LTHSGWNSVLECIVGGVPMISRPFFGDQGLN-TILTESVLEIGVGVDNGVLTKESIKKAL 408
Query: 418 EIEMMVRRILVDKEGQALRSRVKEL 442
E+ M + G +R ++ +L
Sbjct: 409 ELTMSSEK------GGIMRQKIVKL 427
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 330 GFLTRNAKMGLVVPD-----WAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPL 384
G A +G V P+ W PQ++IL AS F++H G ST+E++ N VP++ P
Sbjct: 292 GRFVDPADLGEVPPNVEVHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQ 349
Query: 385 YAEQKMNATMLAE-ELGVAVRPNEMPTENL 413
AEQ MNA + E LG + +++ E L
Sbjct: 350 IAEQTMNAERIVELGLGRHIPRDQVTAEKL 379
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 345 WAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVR 404
W PQ ++LGH F++H G N E+I +G+P + PL+A+Q N + G AVR
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAH-XKARGAAVR 133
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 14/107 (13%)
Query: 342 VPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGV 401
V DW PQ+ IL A + F++H G + E + P+I P +Q NA ML + LGV
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML-QGLGV 343
Query: 402 AVR-PNEMPTENLVKRE--------EIEMMVRRILVD--KEGQALRS 437
A + E T +L++ E+ +RRI + +EG R+
Sbjct: 344 ARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRA 390
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 345 WAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVA-- 402
W P +L HA L+H + LE+ GVPL++ P +A + + ELG+
Sbjct: 288 WIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSV 345
Query: 403 VRPNEMPTENLVKREEIEMM 422
+RP+++ ++ RE +E +
Sbjct: 346 LRPDQLEPASI--REAVERL 363
>pdb|3T30|B Chain B, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|E Chain E, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|D Chain D, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|A Chain A, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|C Chain C, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|H Chain H, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|I Chain I, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|J Chain J, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|F Chain F, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
pdb|3T30|G Chain G, Human Nucleoplasmin (Npm2): A Histone Chaperone In Oocytes
And Early Embryos
Length = 110
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 285 VAWGLELSQQRFIWVVRPPMDNDVSGSFF 313
V WG ELSQ+R W RP ++ S
Sbjct: 5 VLWGCELSQERRTWTFRPQLEGKQSCRLL 33
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|B Chain B, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|C Chain C, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|D Chain D, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
Length = 425
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 279 ANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGT 323
A + V +G ++ RFI ++ DV+G F VG GS+D +
Sbjct: 162 ARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDAS 206
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|D Chain D, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|A Chain A, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|B Chain B, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
Length = 425
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 279 ANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGT 323
A + V +G ++ RFI ++ DV+G F VG GS+D +
Sbjct: 162 ARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDAS 206
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|B Chain B, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|C Chain C, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|D Chain D, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
Length = 425
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 279 ANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGT 323
A + V +G ++ RFI ++ DV+G F VG GS+D +
Sbjct: 162 ARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDAS 206
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product
Length = 425
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 279 ANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGT 323
A + V +G ++ RFI ++ DV+G F VG GS+D +
Sbjct: 162 ARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDAS 206
>pdb|1IHF|A Chain A, Integration Host FactorDNA COMPLEX
pdb|1OUZ|A Chain A, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed
With A Variant H' Site (T44a)
pdb|1OWF|A Chain A, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed
With The Native H' Site
pdb|1OWG|A Chain A, Crystal Structure Of Wt Ihf Complexed With An Altered H'
Site (T44a)
pdb|2HT0|A Chain A, Ihf Bound To Doubly Nicked Dna
Length = 99
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 406 NEMPTENLVKREEIEMMVRRILVDKEGQALRSRVK 440
N+ P N E+I + RR++ + GQ L+SRV+
Sbjct: 58 NQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 345 WAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWP 383
W PQ +L H + + H G +TL ++ GVP + +P
Sbjct: 299 WVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFP 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,816,889
Number of Sequences: 62578
Number of extensions: 506780
Number of successful extensions: 1203
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1154
Number of HSP's gapped (non-prelim): 24
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)