Query 011608
Match_columns 481
No_of_seqs 132 out of 1336
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:15:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02992 coniferyl-alcohol glu 100.0 1.2E-72 2.7E-77 560.5 47.2 471 1-480 1-480 (481)
2 PLN03015 UDP-glucosyl transfer 100.0 4.2E-70 9E-75 539.1 45.3 456 5-468 3-467 (470)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.2E-69 7E-74 535.8 45.7 436 4-469 6-450 (451)
4 PLN02863 UDP-glucoronosyl/UDP- 100.0 3.1E-69 6.8E-74 539.6 45.0 443 3-469 7-471 (477)
5 PLN02173 UDP-glucosyl transfer 100.0 8E-69 1.7E-73 530.4 45.0 428 1-468 1-447 (449)
6 PLN00164 glucosyltransferase; 100.0 9.7E-69 2.1E-73 537.9 45.7 454 5-470 3-474 (480)
7 PLN02555 limonoid glucosyltran 100.0 7.2E-68 1.6E-72 527.9 44.5 447 3-474 5-474 (480)
8 PLN02210 UDP-glucosyl transfer 100.0 1.1E-67 2.3E-72 527.1 45.3 431 2-468 5-454 (456)
9 PLN02207 UDP-glycosyltransfera 100.0 1.9E-67 4.2E-72 522.4 45.8 442 6-469 4-465 (468)
10 PLN02670 transferase, transfer 100.0 1.9E-67 4.1E-72 523.0 44.6 440 4-471 5-467 (472)
11 PLN02534 UDP-glycosyltransfera 100.0 4.4E-67 9.6E-72 522.8 46.5 444 5-469 8-486 (491)
12 PLN03004 UDP-glycosyltransfera 100.0 1E-67 2.2E-72 522.9 40.9 440 1-458 1-450 (451)
13 PLN02208 glycosyltransferase f 100.0 4.8E-67 1E-71 519.0 44.2 425 1-470 1-440 (442)
14 PLN02562 UDP-glycosyltransfera 100.0 4.6E-67 1E-71 522.1 44.1 426 5-468 6-448 (448)
15 PLN02764 glycosyltransferase f 100.0 2E-66 4.3E-71 511.5 43.9 429 1-471 1-447 (453)
16 PLN02554 UDP-glycosyltransfera 100.0 2.7E-66 5.9E-71 522.4 43.6 446 5-470 2-479 (481)
17 PLN03007 UDP-glucosyltransfera 100.0 9.7E-66 2.1E-70 519.1 45.0 445 1-470 1-481 (482)
18 PLN02152 indole-3-acetate beta 100.0 1E-65 2.2E-70 509.2 43.7 434 6-467 4-454 (455)
19 PLN02167 UDP-glycosyltransfera 100.0 9.1E-66 2E-70 517.8 43.9 446 5-469 3-472 (475)
20 PLN00414 glycosyltransferase f 100.0 1.6E-65 3.5E-70 508.7 43.5 422 4-470 3-441 (446)
21 PLN02448 UDP-glycosyltransfera 100.0 2.8E-65 6.1E-70 513.2 44.7 436 3-470 8-458 (459)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.6E-46 3.4E-51 379.8 32.8 408 6-467 21-464 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 3.1E-49 6.8E-54 406.5 1.1 375 7-446 2-423 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 5.6E-42 1.2E-46 341.8 28.5 360 11-448 1-375 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.8E-42 6E-47 345.6 22.8 364 6-446 1-385 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 2.8E-42 6.1E-47 355.0 19.9 404 5-447 5-437 (496)
27 COG1819 Glycosyl transferases, 100.0 1.6E-39 3.4E-44 320.3 23.5 383 5-468 1-399 (406)
28 PRK12446 undecaprenyldiphospho 99.9 2.6E-25 5.5E-30 216.7 27.8 322 7-440 3-334 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.9 7.2E-22 1.6E-26 190.1 29.0 326 6-441 1-337 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 1.9E-22 4.2E-27 195.6 25.3 303 6-426 1-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 1.6E-20 3.5E-25 181.8 25.4 305 7-431 1-316 (321)
32 PRK00726 murG undecaprenyldiph 99.8 2.1E-17 4.7E-22 162.9 28.7 338 6-462 2-350 (357)
33 cd03785 GT1_MurG MurG is an N- 99.7 9.4E-16 2E-20 150.8 27.3 314 7-431 1-326 (350)
34 TIGR01133 murG undecaprenyldip 99.7 1.5E-14 3.4E-19 142.0 27.6 312 6-431 1-323 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 5.3E-15 1.1E-19 146.4 20.8 351 6-464 6-383 (385)
36 PRK13609 diacylglycerol glucos 99.6 1.5E-13 3.3E-18 136.7 26.3 135 263-431 201-340 (380)
37 TIGR03590 PseG pseudaminic aci 99.6 1.2E-13 2.6E-18 130.5 19.8 255 15-394 13-278 (279)
38 PRK13608 diacylglycerol glucos 99.6 1.4E-13 3.1E-18 136.9 20.5 175 263-478 201-382 (391)
39 COG4671 Predicted glycosyl tra 99.6 1.1E-12 2.5E-17 120.6 22.0 335 5-428 9-364 (400)
40 PRK00025 lpxB lipid-A-disaccha 99.5 6.2E-13 1.3E-17 132.3 21.6 347 6-465 2-373 (380)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 3.1E-15 6.7E-20 130.6 0.1 136 266-431 1-146 (167)
42 PLN02605 monogalactosyldiacylg 99.5 7.5E-12 1.6E-16 124.4 21.6 81 338-429 265-347 (382)
43 TIGR03492 conserved hypothetic 99.4 5.7E-11 1.2E-15 117.8 23.3 320 17-431 8-366 (396)
44 PF03033 Glyco_transf_28: Glyc 99.3 4.2E-12 9.1E-17 107.2 6.3 119 8-138 1-131 (139)
45 cd03814 GT1_like_2 This family 99.1 1.4E-07 3.1E-12 92.6 31.2 81 338-431 247-334 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.1 1.7E-07 3.6E-12 95.9 31.7 138 266-441 264-413 (465)
47 COG3980 spsG Spore coat polysa 99.1 2.5E-08 5.5E-13 89.6 19.2 292 6-442 1-303 (318)
48 cd03800 GT1_Sucrose_synthase T 99.0 6.6E-07 1.4E-11 89.4 31.4 81 338-431 283-370 (398)
49 cd03823 GT1_ExpE7_like This fa 99.0 6.2E-07 1.4E-11 87.7 28.7 81 338-431 243-331 (359)
50 cd03794 GT1_wbuB_like This fam 99.0 7E-07 1.5E-11 88.2 28.1 92 337-441 274-378 (394)
51 PRK10307 putative glycosyl tra 99.0 2.8E-06 6.1E-11 85.5 32.2 94 338-442 284-387 (412)
52 cd03816 GT1_ALG1_like This fam 98.9 3.6E-06 7.7E-11 84.7 31.4 122 4-135 2-128 (415)
53 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 7.7E-08 1.7E-12 95.1 17.7 133 263-431 197-339 (363)
54 TIGR00236 wecB UDP-N-acetylglu 98.9 2.8E-07 6.1E-12 91.2 21.6 318 6-431 1-336 (365)
55 cd03817 GT1_UGDG_like This fam 98.9 2.5E-06 5.4E-11 83.9 28.2 92 338-443 259-358 (374)
56 PRK05749 3-deoxy-D-manno-octul 98.9 3.8E-06 8.1E-11 85.0 29.5 73 349-431 314-390 (425)
57 cd04962 GT1_like_5 This family 98.9 2.5E-06 5.5E-11 84.4 27.3 91 339-442 254-350 (371)
58 cd03818 GT1_ExpC_like This fam 98.8 1.2E-05 2.7E-10 80.4 31.0 81 338-431 281-368 (396)
59 cd03795 GT1_like_4 This family 98.8 2.5E-06 5.5E-11 83.7 25.3 141 266-442 192-346 (357)
60 cd03808 GT1_cap1E_like This fa 98.8 1.4E-05 3E-10 77.9 30.1 81 338-431 246-331 (359)
61 TIGR03449 mycothiol_MshA UDP-N 98.8 5.1E-05 1.1E-09 76.2 34.2 81 338-431 283-370 (405)
62 cd03801 GT1_YqgM_like This fam 98.8 9.3E-06 2E-10 79.3 28.2 82 337-431 255-343 (374)
63 cd03798 GT1_wlbH_like This fam 98.8 1.7E-05 3.7E-10 77.6 30.0 81 338-431 259-346 (377)
64 cd03820 GT1_amsD_like This fam 98.7 2.3E-05 4.9E-10 76.0 26.7 80 339-431 236-321 (348)
65 cd03825 GT1_wcfI_like This fam 98.6 5.4E-05 1.2E-09 74.5 28.9 80 339-431 245-332 (365)
66 cd03821 GT1_Bme6_like This fam 98.6 7.6E-05 1.7E-09 73.2 28.6 92 338-442 262-359 (375)
67 cd03805 GT1_ALG2_like This fam 98.6 0.00018 3.9E-09 71.8 30.5 91 338-442 280-378 (392)
68 cd03802 GT1_AviGT4_like This f 98.5 6.1E-05 1.3E-09 73.2 25.4 128 267-429 173-308 (335)
69 COG1519 KdtA 3-deoxy-D-manno-o 98.5 0.00019 4.1E-09 69.3 27.4 322 8-445 51-403 (419)
70 PF04007 DUF354: Protein of un 98.5 0.00034 7.4E-09 67.3 28.6 295 14-427 8-308 (335)
71 cd03819 GT1_WavL_like This fam 98.5 0.00024 5.2E-09 69.6 28.8 95 338-443 246-346 (355)
72 TIGR02472 sucr_P_syn_N sucrose 98.5 0.00054 1.2E-08 69.5 32.0 82 339-431 318-408 (439)
73 cd03796 GT1_PIG-A_like This fa 98.5 0.00013 2.9E-09 73.0 27.3 77 339-430 251-334 (398)
74 cd03799 GT1_amsK_like This is 98.4 0.00024 5.3E-09 69.5 27.2 90 338-440 236-339 (355)
75 PRK14089 ipid-A-disaccharide s 98.4 8.8E-06 1.9E-10 78.7 16.2 89 348-445 229-331 (347)
76 cd03822 GT1_ecORF704_like This 98.4 0.00035 7.5E-09 68.5 28.0 79 339-431 248-336 (366)
77 PRK09922 UDP-D-galactose:(gluc 98.4 0.0001 2.2E-09 72.8 23.9 131 266-431 181-326 (359)
78 cd05844 GT1_like_7 Glycosyltra 98.4 0.00019 4.1E-09 70.8 25.7 81 338-431 245-338 (367)
79 cd03812 GT1_CapH_like This fam 98.4 0.0003 6.5E-09 69.0 26.1 80 338-431 249-333 (358)
80 cd03807 GT1_WbnK_like This fam 98.4 0.00082 1.8E-08 65.5 28.6 78 339-431 252-334 (365)
81 cd03811 GT1_WabH_like This fam 98.3 0.00023 4.9E-09 69.0 23.9 81 338-431 246-334 (353)
82 cd04951 GT1_WbdM_like This fam 98.3 0.0002 4.4E-09 70.2 23.6 76 339-429 246-326 (360)
83 KOG3349 Predicted glycosyltran 98.3 3.8E-06 8.2E-11 68.3 7.5 116 266-404 5-131 (170)
84 TIGR03087 stp1 sugar transfera 98.2 0.00015 3.1E-09 72.7 20.1 90 337-441 279-375 (397)
85 TIGR02468 sucrsPsyn_pln sucros 98.2 0.0047 1E-07 67.4 32.2 92 339-441 549-650 (1050)
86 cd04955 GT1_like_6 This family 98.2 0.0035 7.5E-08 61.6 29.4 78 337-431 247-332 (363)
87 TIGR03568 NeuC_NnaA UDP-N-acet 98.2 0.00069 1.5E-08 66.8 23.6 321 6-427 1-337 (365)
88 TIGR03088 stp2 sugar transfera 98.2 0.0042 9E-08 61.6 28.8 80 339-431 256-340 (374)
89 TIGR02470 sucr_synth sucrose s 98.1 0.012 2.6E-07 62.8 32.3 127 6-134 256-414 (784)
90 PRK01021 lpxB lipid-A-disaccha 98.1 0.00086 1.9E-08 68.6 22.5 196 232-461 382-600 (608)
91 PLN02275 transferase, transfer 98.1 0.0075 1.6E-07 59.8 28.6 75 338-427 286-371 (371)
92 PLN02846 digalactosyldiacylgly 98.0 0.0037 8E-08 62.9 25.0 73 342-430 288-364 (462)
93 PF02684 LpxB: Lipid-A-disacch 98.0 0.00063 1.4E-08 66.4 18.8 103 347-457 253-365 (373)
94 PRK15427 colanic acid biosynth 98.0 0.0067 1.5E-07 60.9 26.9 90 338-440 279-383 (406)
95 PLN00142 sucrose synthase 98.0 0.0069 1.5E-07 64.6 27.6 111 24-136 319-439 (815)
96 cd03809 GT1_mtfB_like This fam 98.0 0.0028 6E-08 62.0 23.5 82 337-431 252-338 (365)
97 TIGR02149 glgA_Coryne glycogen 97.9 0.034 7.3E-07 55.3 29.0 82 343-431 266-354 (388)
98 PRK00654 glgA glycogen synthas 97.8 0.0041 8.9E-08 63.7 21.3 70 350-428 352-427 (466)
99 cd03792 GT1_Trehalose_phosphor 97.8 0.053 1.2E-06 53.6 28.7 78 339-431 253-339 (372)
100 COG0381 WecB UDP-N-acetylgluco 97.7 0.014 3E-07 56.3 22.3 351 6-475 4-376 (383)
101 PRK15179 Vi polysaccharide bio 97.7 0.1 2.2E-06 55.6 32.7 94 338-442 574-673 (694)
102 PF02350 Epimerase_2: UDP-N-ac 97.6 0.00081 1.8E-08 65.6 12.6 131 262-429 178-318 (346)
103 cd03806 GT1_ALG11_like This fa 97.6 0.044 9.5E-07 55.3 25.5 79 338-431 305-394 (419)
104 PF13844 Glyco_transf_41: Glyc 97.6 0.00082 1.8E-08 67.0 12.0 174 262-473 282-466 (468)
105 cd04946 GT1_AmsK_like This fam 97.6 0.0011 2.4E-08 66.5 13.3 95 338-442 289-391 (407)
106 PRK15484 lipopolysaccharide 1, 97.5 0.0061 1.3E-07 60.6 17.3 82 338-431 257-346 (380)
107 COG0763 LpxB Lipid A disacchar 97.4 0.012 2.6E-07 56.5 16.9 108 351-466 261-378 (381)
108 PLN02949 transferase, transfer 97.4 0.22 4.8E-06 50.7 32.5 80 338-430 335-423 (463)
109 PLN02501 digalactosyldiacylgly 97.3 0.17 3.7E-06 52.9 25.4 76 340-431 603-683 (794)
110 cd04949 GT1_gtfA_like This fam 97.3 0.026 5.7E-07 55.7 19.4 96 339-444 262-361 (372)
111 cd03804 GT1_wbaZ_like This fam 97.3 0.0019 4.1E-08 63.4 10.4 127 267-430 197-327 (351)
112 COG5017 Uncharacterized conser 97.3 0.0028 6.1E-08 50.9 9.1 60 344-406 54-122 (161)
113 PLN02316 synthase/transferase 97.2 0.56 1.2E-05 51.9 29.7 102 350-464 915-1028(1036)
114 PF00534 Glycos_transf_1: Glyc 97.2 0.0019 4.2E-08 56.1 8.4 90 338-440 73-170 (172)
115 cd04950 GT1_like_1 Glycosyltra 97.1 0.35 7.5E-06 47.9 29.6 80 337-431 253-342 (373)
116 cd03813 GT1_like_3 This family 97.0 0.14 3E-06 52.6 21.6 81 338-431 354-444 (475)
117 TIGR02193 heptsyl_trn_I lipopo 97.0 0.056 1.2E-06 52.3 17.7 42 7-48 1-43 (319)
118 TIGR02095 glgA glycogen/starch 97.0 0.57 1.2E-05 48.1 26.1 77 339-428 347-436 (473)
119 PF13692 Glyco_trans_1_4: Glyc 96.9 0.002 4.4E-08 53.4 5.9 79 338-429 53-135 (135)
120 TIGR02918 accessory Sec system 96.8 0.31 6.7E-06 50.2 21.9 98 338-443 376-481 (500)
121 KOG4626 O-linked N-acetylgluco 96.8 0.027 5.8E-07 56.9 13.1 176 263-476 757-943 (966)
122 cd01635 Glycosyltransferase_GT 96.7 0.24 5.3E-06 44.4 18.2 26 15-41 12-37 (229)
123 COG3914 Spy Predicted O-linked 96.6 0.064 1.4E-06 54.0 14.6 177 262-476 427-616 (620)
124 PRK09814 beta-1,6-galactofuran 96.6 0.0097 2.1E-07 58.0 9.1 108 339-464 208-330 (333)
125 cd03791 GT1_Glycogen_synthase_ 96.3 1.5 3.2E-05 45.0 25.9 71 350-429 366-442 (476)
126 PRK10125 putative glycosyl tra 96.3 1.4 3E-05 44.2 25.0 32 12-44 9-40 (405)
127 PF06722 DUF1205: Protein of u 95.4 0.016 3.5E-07 44.8 3.2 54 251-304 27-85 (97)
128 PF13477 Glyco_trans_4_2: Glyc 95.2 0.42 9.1E-06 39.6 11.8 103 7-136 1-107 (139)
129 PHA01633 putative glycosyl tra 95.1 0.48 1E-05 45.9 13.2 83 339-429 202-307 (335)
130 PRK15490 Vi polysaccharide bio 94.5 6.8 0.00015 40.6 21.0 62 338-406 455-521 (578)
131 PRK10017 colanic acid biosynth 94.3 1.3 2.7E-05 44.6 14.3 80 350-442 323-403 (426)
132 PF13579 Glyco_trans_4_4: Glyc 94.2 0.1 2.2E-06 44.0 5.5 97 21-136 6-104 (160)
133 COG1817 Uncharacterized protei 93.7 6.2 0.00013 37.2 23.5 108 12-137 6-113 (346)
134 PF01975 SurE: Survival protei 93.5 0.41 8.9E-06 42.4 8.1 42 6-49 1-42 (196)
135 PF13524 Glyco_trans_1_2: Glyc 93.4 0.64 1.4E-05 35.4 8.3 82 363-464 9-91 (92)
136 TIGR02201 heptsyl_trn_III lipo 93.2 8 0.00017 37.7 17.6 106 7-133 1-108 (344)
137 PHA01630 putative group 1 glyc 92.9 2.2 4.7E-05 41.5 13.0 76 345-430 197-295 (331)
138 cd03789 GT1_LPS_heptosyltransf 92.2 10 0.00022 35.6 18.1 42 7-48 1-43 (279)
139 PF08660 Alg14: Oligosaccharid 91.7 2.1 4.6E-05 37.0 10.0 116 12-137 4-130 (170)
140 PRK14098 glycogen synthase; Pr 91.1 4.4 9.6E-05 41.7 13.5 79 338-427 362-449 (489)
141 PF12000 Glyco_trans_4_3: Gkyc 89.6 6.4 0.00014 34.0 11.0 91 31-135 1-95 (171)
142 PF13439 Glyco_transf_4: Glyco 88.5 3.2 6.9E-05 35.3 8.8 101 14-138 10-111 (177)
143 cd02067 B12-binding B12 bindin 88.4 5.2 0.00011 32.1 9.3 45 7-52 1-45 (119)
144 PRK10422 lipopolysaccharide co 88.2 4.6 9.9E-05 39.6 10.6 111 1-133 1-113 (352)
145 PRK13932 stationary phase surv 86.2 7.7 0.00017 35.9 10.0 42 4-48 4-45 (257)
146 COG1618 Predicted nucleotide k 84.7 8.2 0.00018 32.8 8.5 60 1-69 1-60 (179)
147 TIGR03713 acc_sec_asp1 accesso 83.5 1.4 3E-05 45.6 4.3 89 339-445 410-505 (519)
148 COG4370 Uncharacterized protei 82.6 2.7 5.9E-05 39.2 5.3 87 343-441 300-388 (412)
149 PRK13934 stationary phase surv 81.5 14 0.0003 34.4 9.6 40 6-48 1-40 (266)
150 PRK02261 methylaspartate mutas 81.3 4.9 0.00011 33.3 6.1 47 5-52 3-49 (137)
151 PLN02939 transferase, transfer 79.8 47 0.001 36.9 14.2 83 338-428 837-930 (977)
152 PF06258 Mito_fiss_Elm1: Mitoc 79.7 11 0.00023 36.3 8.6 57 347-406 221-281 (311)
153 COG0496 SurE Predicted acid ph 79.1 11 0.00023 34.7 7.8 110 6-137 1-126 (252)
154 TIGR02400 trehalose_OtsA alpha 76.6 10 0.00022 38.6 7.9 102 344-467 342-454 (456)
155 cd03788 GT1_TPS Trehalose-6-Ph 76.0 10 0.00022 38.7 7.8 73 343-431 346-429 (460)
156 PRK14099 glycogen synthase; Pr 75.6 52 0.0011 33.8 12.9 40 4-44 2-47 (485)
157 PRK05973 replicative DNA helic 75.3 20 0.00043 32.9 8.6 45 7-52 66-110 (237)
158 COG1703 ArgK Putative periplas 75.2 35 0.00077 32.2 10.1 113 4-133 50-171 (323)
159 PRK13935 stationary phase surv 75.0 29 0.00063 32.1 9.6 41 6-49 1-41 (253)
160 PRK10964 ADP-heptose:LPS hepto 74.4 14 0.00031 35.5 8.1 43 6-48 1-44 (322)
161 PRK13933 stationary phase surv 74.1 34 0.00074 31.6 9.9 40 6-48 1-40 (253)
162 COG0003 ArsA Predicted ATPase 74.0 41 0.00088 32.4 10.8 42 6-48 2-44 (322)
163 TIGR02919 accessory Sec system 73.5 62 0.0013 32.8 12.4 93 338-445 328-425 (438)
164 PLN03063 alpha,alpha-trehalose 73.4 48 0.001 36.5 12.5 100 350-470 371-478 (797)
165 PRK10916 ADP-heptose:LPS hepto 71.8 38 0.00082 33.0 10.5 104 6-133 1-106 (348)
166 PF02702 KdpD: Osmosensitive K 71.8 17 0.00037 32.2 6.9 42 5-47 5-46 (211)
167 TIGR00715 precor6x_red precorr 71.5 36 0.00077 31.6 9.5 93 6-135 1-99 (256)
168 PF02310 B12-binding: B12 bind 70.7 13 0.00027 29.8 5.8 46 6-52 1-46 (121)
169 PRK05595 replicative DNA helic 70.6 24 0.00052 35.8 8.9 44 8-52 204-248 (444)
170 COG0859 RfaF ADP-heptose:LPS h 70.5 1.1E+02 0.0023 29.7 18.0 105 5-133 1-107 (334)
171 cd03793 GT1_Glycogen_synthase_ 70.1 21 0.00045 37.2 8.2 80 347-430 467-553 (590)
172 PF02951 GSH-S_N: Prokaryotic 70.0 9 0.00019 30.9 4.5 38 6-44 1-41 (119)
173 PRK08506 replicative DNA helic 69.1 42 0.0009 34.4 10.3 45 7-52 194-238 (472)
174 PF04413 Glycos_transf_N: 3-De 68.6 34 0.00074 30.0 8.4 100 8-136 23-126 (186)
175 TIGR00087 surE 5'/3'-nucleotid 66.8 30 0.00065 31.8 7.9 41 6-49 1-41 (244)
176 PRK06321 replicative DNA helic 65.6 47 0.001 34.0 9.8 45 7-52 228-273 (472)
177 PRK05986 cob(I)alamin adenolsy 64.4 1E+02 0.0022 27.2 11.1 102 6-118 23-126 (191)
178 TIGR02195 heptsyl_trn_II lipop 63.6 53 0.0011 31.7 9.6 103 7-133 1-105 (334)
179 TIGR03600 phage_DnaB phage rep 63.1 71 0.0015 32.2 10.6 44 8-52 197-241 (421)
180 PF02441 Flavoprotein: Flavopr 63.1 12 0.00027 30.5 4.2 41 6-48 1-41 (129)
181 cd00561 CobA_CobO_BtuR ATP:cor 62.7 98 0.0021 26.4 10.8 101 7-118 4-106 (159)
182 TIGR02370 pyl_corrinoid methyl 62.6 22 0.00049 31.5 6.1 47 5-52 84-130 (197)
183 cd02071 MM_CoA_mut_B12_BD meth 62.5 19 0.00042 29.0 5.2 44 7-51 1-44 (122)
184 cd02070 corrinoid_protein_B12- 62.3 23 0.0005 31.5 6.2 47 5-52 82-128 (201)
185 COG2874 FlaH Predicted ATPases 61.0 66 0.0014 28.9 8.4 93 15-121 38-137 (235)
186 PRK00346 surE 5'(3')-nucleotid 60.9 94 0.002 28.8 9.9 41 6-49 1-41 (250)
187 PLN02470 acetolactate synthase 60.4 55 0.0012 34.6 9.6 28 356-383 76-109 (585)
188 PRK05636 replicative DNA helic 60.4 48 0.001 34.3 8.8 45 7-52 267-312 (505)
189 COG0438 RfaG Glycosyltransfera 60.4 1.5E+02 0.0032 27.7 15.9 80 338-430 257-343 (381)
190 TIGR02015 BchY chlorophyllide 60.0 77 0.0017 31.9 10.1 90 7-135 287-380 (422)
191 PRK05748 replicative DNA helic 59.4 79 0.0017 32.1 10.2 45 7-52 205-250 (448)
192 TIGR02655 circ_KaiC circadian 59.2 1.1E+02 0.0024 31.4 11.4 93 7-118 265-364 (484)
193 cd00550 ArsA_ATPase Oxyanion-t 59.1 86 0.0019 29.0 9.7 38 8-46 3-40 (254)
194 cd07039 TPP_PYR_POX Pyrimidine 58.4 1.2E+02 0.0025 25.9 10.7 27 357-383 64-96 (164)
195 TIGR02398 gluc_glyc_Psyn gluco 57.9 1.7E+02 0.0036 30.2 12.1 111 341-472 365-485 (487)
196 PF05159 Capsule_synth: Capsul 56.7 43 0.00094 31.2 7.3 42 340-384 185-226 (269)
197 cd01974 Nitrogenase_MoFe_beta 56.7 1.2E+02 0.0026 30.8 10.9 36 95-135 367-402 (435)
198 PRK12342 hypothetical protein; 56.3 1.6E+02 0.0035 27.3 10.7 39 96-136 100-144 (254)
199 PHA02542 41 41 helicase; Provi 56.2 20 0.00042 36.7 5.2 44 8-52 193-236 (473)
200 PRK06849 hypothetical protein; 56.2 70 0.0015 31.7 9.1 36 4-44 3-38 (389)
201 cd01980 Chlide_reductase_Y Chl 56.1 1.3E+02 0.0029 30.1 11.1 93 7-135 282-375 (416)
202 PRK09165 replicative DNA helic 56.1 80 0.0017 32.6 9.6 44 8-52 220-278 (497)
203 PF12146 Hydrolase_4: Putative 56.0 23 0.00049 26.1 4.2 35 6-41 16-50 (79)
204 cd00984 DnaB_C DnaB helicase C 55.9 1E+02 0.0022 28.0 9.6 45 8-52 16-60 (242)
205 COG2185 Sbm Methylmalonyl-CoA 55.5 37 0.00079 28.3 5.6 47 4-51 11-57 (143)
206 PRK08760 replicative DNA helic 55.3 78 0.0017 32.5 9.3 45 7-52 231-276 (476)
207 PF06925 MGDG_synth: Monogalac 54.3 40 0.00088 28.9 6.2 45 90-136 74-124 (169)
208 PRK04328 hypothetical protein; 53.8 1.8E+02 0.0039 26.7 11.2 45 7-52 25-69 (249)
209 PRK08006 replicative DNA helic 53.4 1.3E+02 0.0027 30.9 10.4 45 7-52 226-271 (471)
210 TIGR00665 DnaB replicative DNA 52.9 64 0.0014 32.6 8.4 45 7-52 197-242 (434)
211 PRK10964 ADP-heptose:LPS hepto 52.2 38 0.00083 32.5 6.4 137 265-428 179-321 (322)
212 PRK08840 replicative DNA helic 51.9 1.4E+02 0.003 30.6 10.4 45 7-52 219-264 (464)
213 PRK07773 replicative DNA helic 51.9 79 0.0017 35.4 9.4 45 8-52 220-264 (886)
214 COG0541 Ffh Signal recognition 51.8 72 0.0016 31.9 7.9 62 5-67 100-161 (451)
215 PRK06904 replicative DNA helic 51.7 78 0.0017 32.4 8.7 45 7-52 223-268 (472)
216 PRK13931 stationary phase surv 51.6 1.2E+02 0.0027 28.2 9.2 101 20-136 14-129 (261)
217 TIGR00725 conserved hypothetic 51.4 78 0.0017 27.0 7.3 101 251-385 20-124 (159)
218 cd02069 methionine_synthase_B1 51.3 45 0.00098 30.0 6.2 48 4-52 87-134 (213)
219 PRK00090 bioD dithiobiotin syn 51.0 97 0.0021 27.8 8.5 34 8-42 2-36 (222)
220 PRK14501 putative bifunctional 50.9 39 0.00084 36.9 6.7 111 342-470 346-463 (726)
221 PRK10490 sensor protein KdpD; 50.1 71 0.0015 35.8 8.7 42 5-47 24-65 (895)
222 PRK06067 flagellar accessory p 50.0 40 0.00087 30.7 5.8 45 7-52 27-71 (234)
223 COG0552 FtsY Signal recognitio 49.9 64 0.0014 31.1 7.0 61 6-67 140-200 (340)
224 PRK06718 precorrin-2 dehydroge 49.9 1.9E+02 0.0041 25.7 10.0 107 348-464 64-180 (202)
225 PRK11519 tyrosine kinase; Prov 49.8 1.7E+02 0.0036 32.0 11.3 117 5-136 525-668 (719)
226 smart00851 MGS MGS-like domain 49.4 1E+02 0.0022 23.0 7.1 34 97-132 47-89 (90)
227 PLN02929 NADH kinase 49.2 28 0.00061 33.1 4.6 65 357-430 65-138 (301)
228 cd01425 RPS2 Ribosomal protein 48.9 98 0.0021 27.3 7.8 114 19-138 42-160 (193)
229 cd07035 TPP_PYR_POX_like Pyrim 48.8 1.6E+02 0.0034 24.6 9.9 28 357-384 60-93 (155)
230 TIGR00959 ffh signal recogniti 48.8 88 0.0019 31.6 8.3 45 6-51 100-145 (428)
231 PRK04885 ppnK inorganic polyph 48.1 33 0.00071 32.1 4.9 53 357-430 36-94 (265)
232 cd03115 SRP The signal recogni 47.9 1.4E+02 0.0031 25.4 8.7 40 8-48 3-42 (173)
233 TIGR03877 thermo_KaiC_1 KaiC d 47.6 1.2E+02 0.0025 27.7 8.5 45 7-52 23-67 (237)
234 TIGR00347 bioD dethiobiotin sy 47.4 1.4E+02 0.0031 25.1 8.6 28 12-40 5-32 (166)
235 PF00551 Formyl_trans_N: Formy 47.2 1.5E+02 0.0033 25.7 8.8 106 6-137 1-110 (181)
236 PRK06749 replicative DNA helic 46.5 1.3E+02 0.0027 30.5 9.1 45 7-52 188-232 (428)
237 PRK03359 putative electron tra 46.5 2.5E+02 0.0053 26.1 11.2 39 96-136 103-147 (256)
238 PRK06249 2-dehydropantoate 2-r 46.4 28 0.00061 33.4 4.4 38 1-44 1-38 (313)
239 cd02065 B12-binding_like B12 b 46.3 55 0.0012 26.1 5.5 44 8-52 2-45 (125)
240 PRK06276 acetolactate synthase 46.1 53 0.0011 34.8 6.7 27 357-383 64-96 (586)
241 PF01075 Glyco_transf_9: Glyco 45.9 33 0.00072 31.4 4.6 95 263-382 104-208 (247)
242 PTZ00445 p36-lilke protein; Pr 45.8 95 0.0021 27.9 7.0 113 17-136 74-206 (219)
243 PRK08322 acetolactate synthase 45.7 50 0.0011 34.6 6.4 27 357-383 64-96 (547)
244 TIGR03880 KaiC_arch_3 KaiC dom 45.6 75 0.0016 28.6 6.9 100 8-118 19-118 (224)
245 cd01121 Sms Sms (bacterial rad 45.3 2.7E+02 0.0058 27.6 11.0 41 8-49 85-125 (372)
246 KOG0853 Glycosyltransferase [C 45.2 18 0.0004 36.7 2.9 67 362-441 376-442 (495)
247 PF05225 HTH_psq: helix-turn-h 45.1 41 0.0009 21.7 3.6 25 415-442 1-26 (45)
248 TIGR03878 thermo_KaiC_2 KaiC d 44.8 70 0.0015 29.7 6.6 38 8-46 39-76 (259)
249 PRK07004 replicative DNA helic 44.6 1.8E+02 0.0038 29.8 9.9 44 8-52 216-260 (460)
250 PRK03708 ppnK inorganic polyph 44.6 36 0.00078 32.0 4.6 53 357-430 58-113 (277)
251 PRK10867 signal recognition pa 44.6 93 0.002 31.4 7.8 47 6-52 101-147 (433)
252 PRK02155 ppnK NAD(+)/NADH kina 44.2 40 0.00087 32.0 4.9 53 357-430 64-120 (291)
253 PF02142 MGS: MGS-like domain 44.0 28 0.00061 26.6 3.2 83 22-132 2-94 (95)
254 cd01124 KaiC KaiC is a circadi 43.7 1.7E+02 0.0036 25.2 8.6 44 8-52 2-45 (187)
255 PRK14077 pnk inorganic polypho 43.6 51 0.0011 31.2 5.5 53 357-430 65-121 (287)
256 cd03466 Nitrogenase_NifN_2 Nit 43.5 2E+02 0.0042 29.1 10.0 36 95-135 362-397 (429)
257 cd07038 TPP_PYR_PDC_IPDC_like 43.4 59 0.0013 27.7 5.5 28 357-384 60-93 (162)
258 PF00862 Sucrose_synth: Sucros 43.4 43 0.00092 34.1 5.0 119 15-136 295-432 (550)
259 PRK01911 ppnK inorganic polyph 43.3 46 0.00099 31.6 5.1 53 357-430 65-121 (292)
260 PRK09841 cryptic autophosphory 43.2 4.6E+02 0.01 28.6 13.4 40 5-45 530-571 (726)
261 COG0801 FolK 7,8-dihydro-6-hyd 43.0 52 0.0011 28.0 4.8 34 266-299 3-36 (160)
262 PRK03372 ppnK inorganic polyph 42.8 52 0.0011 31.5 5.4 53 357-430 73-129 (306)
263 PRK08305 spoVFB dipicolinate s 42.6 43 0.00092 29.7 4.4 40 5-45 5-44 (196)
264 cd07037 TPP_PYR_MenD Pyrimidin 42.5 52 0.0011 28.1 4.9 27 357-383 61-93 (162)
265 PRK13789 phosphoribosylamine-- 42.4 1.1E+02 0.0025 30.8 8.1 93 1-132 1-96 (426)
266 PF06180 CbiK: Cobalt chelatas 42.2 44 0.00095 31.2 4.7 38 265-302 2-42 (262)
267 COG2894 MinD Septum formation 42.0 56 0.0012 29.5 5.0 36 7-43 3-40 (272)
268 PRK11823 DNA repair protein Ra 41.7 76 0.0016 32.3 6.7 42 8-50 83-124 (446)
269 TIGR00064 ftsY signal recognit 41.6 1.5E+02 0.0032 27.8 8.3 41 7-48 74-114 (272)
270 TIGR01425 SRP54_euk signal rec 41.4 98 0.0021 31.2 7.3 42 6-48 101-142 (429)
271 KOG0081 GTPase Rab27, small G 40.8 65 0.0014 27.2 4.9 44 93-136 105-163 (219)
272 PRK04539 ppnK inorganic polyph 40.6 57 0.0012 31.0 5.3 53 357-430 69-125 (296)
273 PRK05647 purN phosphoribosylgl 40.6 2.6E+02 0.0057 24.8 9.3 108 6-137 2-111 (200)
274 PF06506 PrpR_N: Propionate ca 40.5 40 0.00086 29.2 4.0 33 353-386 31-63 (176)
275 TIGR02302 aProt_lowcomp conser 40.4 1.5E+02 0.0032 32.8 8.9 64 414-478 474-543 (851)
276 PRK02231 ppnK inorganic polyph 40.3 55 0.0012 30.7 5.1 61 347-430 35-99 (272)
277 PRK02649 ppnK inorganic polyph 40.0 53 0.0012 31.4 5.0 53 357-430 69-125 (305)
278 KOG2941 Beta-1,4-mannosyltrans 40.0 3.7E+02 0.008 26.3 28.4 127 4-141 11-142 (444)
279 PF00448 SRP54: SRP54-type pro 39.8 84 0.0018 27.8 6.0 60 7-67 3-62 (196)
280 cd01968 Nitrogenase_NifE_I Nit 39.7 2.2E+02 0.0048 28.5 9.8 35 95-134 346-380 (410)
281 COG3660 Predicted nucleoside-d 39.7 1.2E+02 0.0025 28.3 6.7 38 344-382 234-271 (329)
282 COG0052 RpsB Ribosomal protein 39.5 1.1E+02 0.0023 28.1 6.5 34 105-138 154-189 (252)
283 PF07355 GRDB: Glycine/sarcosi 39.4 67 0.0015 31.1 5.5 45 88-134 63-117 (349)
284 COG0223 Fmt Methionyl-tRNA for 39.4 69 0.0015 30.6 5.6 38 5-48 1-38 (307)
285 TIGR01470 cysG_Nterm siroheme 39.2 2.8E+02 0.0061 24.7 9.3 95 349-449 64-165 (205)
286 PF04464 Glyphos_transf: CDP-G 39.1 44 0.00096 32.8 4.6 92 344-446 259-351 (369)
287 PF02606 LpxK: Tetraacyldisacc 39.1 1.5E+02 0.0034 28.6 8.1 90 11-118 43-139 (326)
288 PRK03378 ppnK inorganic polyph 38.7 60 0.0013 30.8 5.2 53 357-430 64-120 (292)
289 PF01012 ETF: Electron transfe 38.5 2.2E+02 0.0047 24.1 8.3 98 21-136 19-122 (164)
290 PF07302 AroM: AroM protein; 38.4 3E+02 0.0066 24.9 9.5 34 99-134 172-208 (221)
291 COG1066 Sms Predicted ATP-depe 38.3 62 0.0013 32.2 5.1 101 8-135 96-217 (456)
292 PRK14478 nitrogenase molybdenu 38.2 2.1E+02 0.0045 29.4 9.3 33 96-133 384-416 (475)
293 PRK12311 rpsB 30S ribosomal pr 38.1 1.3E+02 0.0028 29.1 7.2 34 105-138 150-185 (326)
294 TIGR01283 nifE nitrogenase mol 37.8 2.4E+02 0.0053 28.7 9.8 36 94-134 384-419 (456)
295 cd01840 SGNH_hydrolase_yrhL_li 37.8 76 0.0016 26.4 5.2 37 263-300 50-86 (150)
296 PRK03501 ppnK inorganic polyph 37.8 74 0.0016 29.7 5.5 54 357-430 40-98 (264)
297 cd00532 MGS-like MGS-like doma 37.8 1.9E+02 0.004 22.8 7.2 84 18-133 10-104 (112)
298 COG2210 Peroxiredoxin family p 37.3 71 0.0015 26.3 4.6 37 5-43 4-40 (137)
299 PRK14075 pnk inorganic polypho 37.3 69 0.0015 29.7 5.3 53 357-430 42-95 (256)
300 PF09140 MipZ: ATPase MipZ; I 36.7 10 0.00022 34.8 -0.3 43 7-50 1-45 (261)
301 PRK10422 lipopolysaccharide co 36.5 1.4E+02 0.003 29.1 7.6 98 264-382 183-287 (352)
302 KOG0100 Molecular chaperones G 36.5 1E+02 0.0022 30.4 6.2 53 375-427 499-553 (663)
303 PRK01231 ppnK inorganic polyph 36.4 67 0.0014 30.6 5.1 53 357-430 63-119 (295)
304 TIGR03029 EpsG chain length de 35.8 3.6E+02 0.0078 25.0 13.2 38 5-43 102-141 (274)
305 PRK07710 acetolactate synthase 35.7 86 0.0019 33.0 6.3 27 357-383 79-111 (571)
306 COG2230 Cfa Cyclopropane fatty 35.6 32 0.0007 32.3 2.7 39 364-402 81-121 (283)
307 PF02374 ArsA_ATPase: Anion-tr 35.6 52 0.0011 31.5 4.2 42 6-48 1-43 (305)
308 COG3340 PepE Peptidase E [Amin 35.5 3.1E+02 0.0067 24.7 8.5 48 251-299 21-68 (224)
309 PRK11889 flhF flagellar biosyn 35.3 1.7E+02 0.0038 29.2 7.7 40 6-46 242-281 (436)
310 PRK08155 acetolactate synthase 34.9 1.2E+02 0.0026 31.9 7.2 27 357-383 77-109 (564)
311 COG4088 Predicted nucleotide k 34.9 48 0.001 29.6 3.4 37 6-43 2-38 (261)
312 cd03412 CbiK_N Anaerobic cobal 34.7 69 0.0015 26.0 4.3 36 265-300 2-39 (127)
313 TIGR00639 PurN phosphoribosylg 34.5 3.2E+02 0.007 24.0 10.3 107 6-137 1-110 (190)
314 PRK07525 sulfoacetaldehyde ace 33.8 2.9E+02 0.0062 29.3 9.9 27 357-383 69-101 (588)
315 COG3195 Uncharacterized protei 33.5 1.7E+02 0.0036 25.0 6.2 73 367-445 88-162 (176)
316 TIGR03646 YtoQ_fam YtoQ family 33.4 1.4E+02 0.003 24.4 5.5 102 266-384 2-111 (144)
317 PF10163 EnY2: Transcription f 33.4 89 0.0019 23.4 4.4 48 415-468 15-62 (86)
318 TIGR00416 sms DNA repair prote 33.2 1.5E+02 0.0033 30.1 7.4 41 8-49 97-137 (454)
319 COG1484 DnaC DNA replication p 33.1 47 0.001 30.8 3.4 40 6-46 106-145 (254)
320 PF13779 DUF4175: Domain of un 33.0 2.2E+02 0.0048 31.5 8.8 65 413-478 442-512 (820)
321 COG0299 PurN Folate-dependent 31.9 1.7E+02 0.0037 25.8 6.3 103 281-425 67-171 (200)
322 PF03808 Glyco_tran_WecB: Glyc 31.9 3.3E+02 0.0072 23.4 11.5 86 206-303 51-136 (172)
323 PRK02797 4-alpha-L-fucosyltran 31.8 1.1E+02 0.0023 29.3 5.5 75 343-426 212-291 (322)
324 COG1663 LpxK Tetraacyldisaccha 31.5 1.6E+02 0.0034 28.5 6.6 32 11-43 55-86 (336)
325 TIGR00147 lipid kinase, YegS/R 31.4 1.7E+02 0.0038 27.5 7.2 28 357-384 58-91 (293)
326 PRK12446 undecaprenyldiphospho 31.2 88 0.0019 30.6 5.2 33 350-382 85-120 (352)
327 TIGR02237 recomb_radB DNA repa 31.2 1.7E+02 0.0037 25.8 6.7 36 8-44 15-50 (209)
328 PF00731 AIRC: AIR carboxylase 31.1 3.2E+02 0.007 23.0 8.8 138 267-447 3-147 (150)
329 PRK10416 signal recognition pa 30.8 2E+02 0.0043 27.7 7.4 41 6-47 115-155 (318)
330 COG1422 Predicted membrane pro 30.6 2.1E+02 0.0046 25.3 6.6 46 419-466 60-106 (201)
331 PRK06732 phosphopantothenate-- 30.5 60 0.0013 29.6 3.6 21 22-43 29-49 (229)
332 cd01141 TroA_d Periplasmic bin 30.4 79 0.0017 27.4 4.3 34 100-135 64-99 (186)
333 PF09001 DUF1890: Domain of un 30.4 58 0.0012 26.8 3.0 30 17-47 11-40 (139)
334 PLN02935 Bifunctional NADH kin 30.4 72 0.0016 32.6 4.4 53 357-430 263-319 (508)
335 PRK14076 pnk inorganic polypho 30.1 84 0.0018 33.1 5.1 53 357-430 349-405 (569)
336 PF03401 TctC: Tripartite tric 29.9 53 0.0011 30.9 3.3 54 416-478 219-272 (274)
337 COG2109 BtuR ATP:corrinoid ade 29.9 3.9E+02 0.0085 23.6 10.1 101 8-118 31-133 (198)
338 PF04127 DFP: DNA / pantothena 29.5 56 0.0012 28.7 3.1 22 22-44 32-53 (185)
339 PRK10916 ADP-heptose:LPS hepto 29.4 2.3E+02 0.005 27.5 7.9 97 263-382 179-286 (348)
340 cd01122 GP4d_helicase GP4d_hel 29.0 1.3E+02 0.0029 27.9 5.8 46 7-52 32-77 (271)
341 cd06533 Glyco_transf_WecG_TagA 28.9 3.7E+02 0.0081 23.0 11.7 85 207-303 50-134 (171)
342 TIGR01918 various_sel_PB selen 28.5 1.3E+02 0.0027 30.1 5.5 44 90-135 61-114 (431)
343 TIGR01917 gly_red_sel_B glycin 28.4 1.3E+02 0.0027 30.1 5.5 44 90-135 61-114 (431)
344 PRK14974 cell division protein 28.3 1.8E+02 0.004 28.2 6.7 42 6-48 141-182 (336)
345 COG2159 Predicted metal-depend 28.3 2.7E+02 0.0059 26.4 7.8 70 232-302 97-166 (293)
346 PRK13011 formyltetrahydrofolat 28.3 4E+02 0.0086 25.2 8.8 76 354-443 194-271 (286)
347 PF05728 UPF0227: Uncharacteri 28.2 1.2E+02 0.0026 26.6 5.0 45 94-138 46-91 (187)
348 TIGR02852 spore_dpaB dipicolin 28.0 82 0.0018 27.7 3.8 37 7-44 2-38 (187)
349 PF06564 YhjQ: YhjQ protein; 27.7 4.9E+02 0.011 24.0 10.7 36 7-43 3-39 (243)
350 PRK11914 diacylglycerol kinase 27.7 1.5E+02 0.0032 28.3 5.9 27 358-384 66-96 (306)
351 TIGR00173 menD 2-succinyl-5-en 27.6 62 0.0013 32.7 3.5 26 357-382 64-95 (432)
352 PRK01185 ppnK inorganic polyph 27.5 1.1E+02 0.0025 28.6 4.9 53 357-430 53-106 (271)
353 TIGR01501 MthylAspMutase methy 27.4 2.2E+02 0.0048 23.5 6.0 46 6-52 2-47 (134)
354 PRK14099 glycogen synthase; Pr 27.3 95 0.0021 31.9 4.9 68 357-430 370-448 (485)
355 TIGR00682 lpxK tetraacyldisacc 27.3 2.1E+02 0.0046 27.4 6.9 31 12-43 37-67 (311)
356 PF08323 Glyco_transf_5: Starc 27.3 54 0.0012 30.2 2.8 24 20-44 20-43 (245)
357 PRK05858 hypothetical protein; 27.2 2.5E+02 0.0055 29.3 8.1 27 357-383 68-100 (542)
358 TIGR02990 ectoine_eutA ectoine 27.2 2.3E+02 0.005 26.0 6.8 102 19-134 105-212 (239)
359 cd01452 VWA_26S_proteasome_sub 27.0 3.4E+02 0.0073 23.8 7.5 63 6-69 108-174 (187)
360 COG4081 Uncharacterized protei 27.0 1.2E+02 0.0026 24.6 4.1 28 15-43 14-41 (148)
361 PRK09219 xanthine phosphoribos 26.9 1.8E+02 0.004 25.5 5.9 41 94-136 39-81 (189)
362 COG1435 Tdk Thymidine kinase [ 26.8 2.9E+02 0.0062 24.5 6.8 38 8-46 7-44 (201)
363 cd01424 MGS_CPS_II Methylglyox 26.8 3.1E+02 0.0066 21.3 7.6 84 17-133 10-100 (110)
364 CHL00076 chlB photochlorophyll 26.7 97 0.0021 32.2 4.7 36 95-135 364-399 (513)
365 TIGR02195 heptsyl_trn_II lipop 26.4 5.6E+02 0.012 24.5 10.0 96 263-382 173-276 (334)
366 PRK13010 purU formyltetrahydro 26.1 4.4E+02 0.0096 25.0 8.7 60 360-427 202-263 (289)
367 PRK13604 luxD acyl transferase 26.0 1.4E+02 0.0029 28.7 5.2 35 5-40 36-70 (307)
368 PRK08199 thiamine pyrophosphat 25.9 2.3E+02 0.0049 29.8 7.5 27 357-383 72-104 (557)
369 PRK13059 putative lipid kinase 25.8 2.3E+02 0.005 26.8 6.9 28 357-384 57-90 (295)
370 COG2205 KdpD Osmosensitive K+ 25.8 2.1E+02 0.0046 31.2 6.9 43 5-48 22-64 (890)
371 PF06506 PrpR_N: Propionate ca 25.8 74 0.0016 27.5 3.2 42 95-139 112-154 (176)
372 PRK11199 tyrA bifunctional cho 25.6 3.6E+02 0.0079 26.6 8.4 34 4-43 97-131 (374)
373 TIGR01278 DPOR_BchB light-inde 25.6 1.1E+02 0.0023 31.9 4.8 36 96-136 355-390 (511)
374 PF04493 Endonuclease_5: Endon 25.6 1.3E+02 0.0028 26.9 4.7 43 94-136 76-125 (206)
375 KOG0780 Signal recognition par 25.4 2.3E+02 0.005 28.0 6.5 46 6-52 102-147 (483)
376 PRK04761 ppnK inorganic polyph 25.4 59 0.0013 30.0 2.6 28 357-384 26-57 (246)
377 COG2910 Putative NADH-flavin r 25.3 67 0.0014 28.1 2.7 34 6-44 1-34 (211)
378 PF00282 Pyridoxal_deC: Pyrido 25.3 1.1E+02 0.0023 30.3 4.7 71 357-429 104-191 (373)
379 PRK02910 light-independent pro 25.1 1.1E+02 0.0025 31.7 4.9 35 96-135 353-387 (519)
380 PF10093 DUF2331: Uncharacteri 25.1 3.6E+02 0.0077 26.7 7.9 112 236-380 145-286 (374)
381 PRK04940 hypothetical protein; 25.0 1.3E+02 0.0029 26.2 4.6 32 107-138 60-92 (180)
382 cd01981 Pchlide_reductase_B Pc 25.0 1.1E+02 0.0025 30.8 4.9 36 96-136 361-396 (430)
383 COG2099 CobK Precorrin-6x redu 25.0 1.1E+02 0.0024 28.2 4.1 40 94-135 55-100 (257)
384 cd07025 Peptidase_S66 LD-Carbo 25.0 1.6E+02 0.0034 27.9 5.5 29 275-303 44-72 (282)
385 PLN02293 adenine phosphoribosy 24.9 2.6E+02 0.0056 24.5 6.5 43 91-135 48-92 (187)
386 PRK13768 GTPase; Provisional 24.8 3.5E+02 0.0076 25.0 7.7 37 7-44 4-40 (253)
387 COG0297 GlgA Glycogen synthase 24.7 2.6E+02 0.0056 28.8 7.3 92 363-467 380-475 (487)
388 TIGR01007 eps_fam capsular exo 24.6 4.8E+02 0.01 22.8 13.7 38 6-44 17-56 (204)
389 PF10929 DUF2811: Protein of u 24.6 2.4E+02 0.0052 19.3 5.0 44 416-463 7-51 (57)
390 TIGR02853 spore_dpaA dipicolin 24.5 1.7E+02 0.0037 27.7 5.6 101 21-133 12-118 (287)
391 PF02776 TPP_enzyme_N: Thiamin 24.3 1.4E+02 0.003 25.6 4.6 29 357-385 65-99 (172)
392 PF05693 Glycogen_syn: Glycoge 24.2 1.9E+02 0.0041 30.5 6.1 90 347-445 462-565 (633)
393 PF06785 UPF0242: Uncharacteri 24.1 1.3E+02 0.0029 28.6 4.5 101 367-470 16-142 (401)
394 PRK06048 acetolactate synthase 24.0 1.9E+02 0.0042 30.4 6.5 27 357-383 71-103 (561)
395 PRK06725 acetolactate synthase 24.0 1.9E+02 0.0041 30.5 6.4 27 357-383 78-110 (570)
396 TIGR01286 nifK nitrogenase mol 23.9 7.2E+02 0.016 25.9 10.4 36 95-135 427-462 (515)
397 TIGR01005 eps_transp_fam exopo 23.7 8.8E+02 0.019 26.6 11.8 39 6-45 546-586 (754)
398 PF01152 Bac_globin: Bacterial 23.6 2.1E+02 0.0046 22.6 5.4 35 443-477 86-120 (120)
399 cd01423 MGS_CPS_I_III Methylgl 23.6 3.7E+02 0.0079 21.1 7.5 95 9-133 3-106 (116)
400 COG1383 RPS17A Ribosomal prote 23.5 2.7E+02 0.0058 20.2 4.9 10 471-480 43-52 (74)
401 PLN02939 transferase, transfer 23.4 86 0.0019 35.0 3.7 40 4-44 480-525 (977)
402 PF10083 DUF2321: Uncharacteri 23.3 2.2E+02 0.0047 24.1 5.2 72 381-467 77-149 (158)
403 PRK07313 phosphopantothenoylcy 23.1 1.1E+02 0.0024 26.7 3.8 40 7-48 3-42 (182)
404 PLN02695 GDP-D-mannose-3',5'-e 23.1 1.5E+02 0.0032 29.2 5.2 37 2-43 18-54 (370)
405 PRK07454 short chain dehydroge 22.8 1.7E+02 0.0036 26.4 5.2 39 1-43 1-39 (241)
406 PF01497 Peripla_BP_2: Peripla 22.7 1.2E+02 0.0026 27.3 4.2 38 99-138 54-93 (238)
407 PF02572 CobA_CobO_BtuR: ATP:c 22.6 5.1E+02 0.011 22.4 9.2 101 7-118 5-107 (172)
408 PRK13054 lipid kinase; Reviewe 22.6 2.2E+02 0.0049 27.0 6.2 28 357-384 57-92 (300)
409 cd01018 ZntC Metal binding pro 22.4 6.3E+02 0.014 23.4 11.3 43 94-138 206-250 (266)
410 cd01976 Nitrogenase_MoFe_alpha 22.3 1.1E+02 0.0023 30.9 4.0 36 95-135 359-394 (421)
411 PRK05562 precorrin-2 dehydroge 22.3 5.9E+02 0.013 23.1 8.9 87 352-448 83-179 (223)
412 cd08806 CARD_CARD14_CARMA2 Cas 22.3 3.2E+02 0.007 20.5 5.3 50 423-478 36-85 (86)
413 PF12695 Abhydrolase_5: Alpha/ 22.1 1.6E+02 0.0034 23.7 4.5 35 8-43 1-35 (145)
414 PRK07206 hypothetical protein; 21.9 2.8E+02 0.006 27.7 7.0 91 7-131 4-96 (416)
415 PRK13236 nitrogenase reductase 21.9 1.7E+02 0.0037 27.8 5.1 43 1-44 1-44 (296)
416 PRK08057 cobalt-precorrin-6x r 21.9 1.6E+02 0.0034 27.2 4.7 92 6-136 3-100 (248)
417 TIGR00313 cobQ cobyric acid sy 21.8 8.8E+02 0.019 24.9 10.8 29 14-43 8-36 (475)
418 PRK14092 2-amino-4-hydroxy-6-h 21.8 2.1E+02 0.0045 24.6 5.0 29 264-292 7-35 (163)
419 PRK01151 rps17E 30S ribosomal 21.7 2.6E+02 0.0056 19.3 4.4 10 471-480 42-51 (58)
420 TIGR00421 ubiX_pad polyprenyl 21.7 90 0.002 27.2 2.9 39 8-48 2-40 (181)
421 PF11657 Activator-TraM: Trans 21.7 4.8E+02 0.01 21.8 7.2 12 394-405 11-22 (144)
422 PF02353 CMAS: Mycolic acid cy 21.6 17 0.00037 34.2 -1.7 44 359-402 66-111 (273)
423 PF02585 PIG-L: GlcNAc-PI de-N 21.6 4.2E+02 0.0091 21.1 8.8 22 91-114 86-107 (128)
424 PRK05632 phosphate acetyltrans 21.6 1E+03 0.023 25.7 11.6 101 7-137 4-115 (684)
425 COG2179 Predicted hydrolase of 21.5 2.2E+02 0.0048 24.5 5.0 92 19-138 48-141 (175)
426 PF01372 Melittin: Melittin; 21.4 14 0.0003 20.2 -1.3 17 365-381 1-17 (26)
427 PRK12723 flagellar biosynthesi 21.4 4.7E+02 0.01 26.1 8.1 45 6-51 175-223 (388)
428 PF01210 NAD_Gly3P_dh_N: NAD-d 21.3 71 0.0015 27.0 2.2 31 8-44 2-32 (157)
429 PRK09620 hypothetical protein; 21.3 1.5E+02 0.0033 27.0 4.4 21 22-43 32-52 (229)
430 PRK06029 3-octaprenyl-4-hydrox 21.2 1.1E+02 0.0024 26.9 3.3 41 6-48 2-43 (185)
431 PRK13337 putative lipid kinase 21.2 3.4E+02 0.0074 25.8 7.1 28 357-384 58-91 (304)
432 PRK14098 glycogen synthase; Pr 21.1 1.6E+02 0.0034 30.4 5.0 42 1-43 1-48 (489)
433 COG1737 RpiR Transcriptional r 21.1 3.3E+02 0.0071 25.6 6.8 92 253-390 122-218 (281)
434 cd00861 ProRS_anticodon_short 21.1 1.8E+02 0.0039 21.6 4.3 36 6-42 2-39 (94)
435 COG1698 Uncharacterized protei 21.0 3.8E+02 0.0081 20.3 5.7 52 415-469 11-66 (93)
436 PRK09302 circadian clock prote 21.0 2.1E+02 0.0045 29.7 6.0 45 7-52 275-319 (509)
437 COG0287 TyrA Prephenate dehydr 20.9 7.1E+02 0.015 23.5 8.9 39 5-49 3-41 (279)
438 cd02034 CooC The accessory pro 20.9 2.1E+02 0.0046 22.7 4.7 37 7-44 1-37 (116)
439 PRK00784 cobyric acid synthase 20.9 7E+02 0.015 25.7 9.7 35 7-42 4-39 (488)
440 PRK05920 aromatic acid decarbo 20.8 1.3E+02 0.0027 26.9 3.7 42 6-49 4-45 (204)
441 PF13450 NAD_binding_8: NAD(P) 20.5 1.2E+02 0.0026 21.4 2.9 21 22-43 8-28 (68)
442 PF09875 DUF2102: Uncharacteri 20.4 1.5E+02 0.0032 23.1 3.4 54 250-303 11-65 (104)
443 TIGR00655 PurU formyltetrahydr 20.4 4.2E+02 0.009 25.0 7.3 59 360-426 193-253 (280)
444 PF14336 DUF4392: Domain of un 20.0 91 0.002 29.6 2.8 32 20-52 63-94 (291)
No 1
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.2e-72 Score=560.47 Aligned_cols=471 Identities=50% Similarity=0.965 Sum_probs=366.7
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCC-C
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFA-TQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLD-A 78 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 78 (481)
|-..+.||+++|+|++||++|++.||+.|+ .+ |+.|||++++.+...+.+.... .++++++.+|.+...++ + .
T Consensus 1 ~~~~~pHVvl~P~paqGHi~P~l~LAk~La~~~-g~~vT~v~t~~n~~~~~~~~~~---~~~i~~~~lp~p~~~gl-p~~ 75 (481)
T PLN02992 1 MHITKPHAAMFSSPGMGHVIPVIELGKRLSANH-GFHVTVFVLETDAASAQSKFLN---STGVDIVGLPSPDISGL-VDP 75 (481)
T ss_pred CCCCCcEEEEeCCcccchHHHHHHHHHHHHhCC-CcEEEEEeCCCchhhhhhcccc---CCCceEEECCCccccCC-CCC
Confidence 667789999999999999999999999998 78 9999999999765543222111 13688999987655444 3 3
Q ss_pred CccHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhcc
Q 011608 79 DASIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEE 158 (481)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (481)
+.+....+......+.+.+++++++...+|+|||+|.++.|+..+|+++|||.+.|+++++..++...+.|.+......+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~ 155 (481)
T PLN02992 76 SAHVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEE 155 (481)
T ss_pred CccHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccc
Confidence 33333344444556678888888875447899999999999999999999999999999998888777766433221111
Q ss_pred ccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhc--cCC--CCCee
Q 011608 159 HYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDG--ISK--LPPIY 234 (481)
Q Consensus 159 ~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~--~~~--~p~~~ 234 (481)
.....+++.+||+++++..+++..+.......+..+.+......+++++++|||.+||+..++++... ... .++++
T Consensus 156 ~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~ 235 (481)
T PLN02992 156 HTVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVY 235 (481)
T ss_pred cccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceE
Confidence 11112345688988888888886554444444555566666778899999999999999999988642 111 24699
Q ss_pred eeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccc
Q 011608 235 PIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFK 314 (481)
Q Consensus 235 ~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~ 314 (481)
.|||++...... ..+++|.+|||++++++||||||||+...+.+++++++.+|+.++++|||+++.+...+.++.++.
T Consensus 236 ~VGPl~~~~~~~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~ 313 (481)
T PLN02992 236 PIGPLCRPIQSS--KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFS 313 (481)
T ss_pred EecCccCCcCCC--cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccccccccccc
Confidence 999998642211 245679999999988999999999999999999999999999999999999975421111111111
Q ss_pred cC-CCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHH
Q 011608 315 VG-DGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNAT 393 (481)
Q Consensus 315 ~~-~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~ 393 (481)
.. +...+.....+|++|.+|++++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+
T Consensus 314 ~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~ 393 (481)
T PLN02992 314 ANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAA 393 (481)
T ss_pred CcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHH
Confidence 00 00000012358999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh--cCCChHHHHHHHHHHHHHHH
Q 011608 394 MLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKAST--KGGSSYNALSQVAKQCEMSL 471 (481)
Q Consensus 394 ~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~ 471 (481)
++++++|+|+.++. ++..++.++|+++|+++|.++.|+.||++++++++.+++|++ +||++++++++|++++.+-.
T Consensus 394 ~~~~~~g~gv~~~~--~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~~~ 471 (481)
T PLN02992 394 LLSDELGIAVRSDD--PKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQRFL 471 (481)
T ss_pred HHHHHhCeeEEecC--CCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH
Confidence 98669999999863 113589999999999999888888999999999999999995 59999999999999998877
Q ss_pred HHHHHhhhc
Q 011608 472 QGLMAKVMG 480 (481)
Q Consensus 472 ~~~~~~~~~ 480 (481)
..++----|
T Consensus 472 ~~~~~~~~~ 480 (481)
T PLN02992 472 ERVRCLARG 480 (481)
T ss_pred HHHHHHhcC
Confidence 766544334
No 2
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=4.2e-70 Score=539.09 Aligned_cols=456 Identities=46% Similarity=0.871 Sum_probs=353.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhh-hh-ccCCCCCCceEEEecCCCCCCCCCCCCccH
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQ-SQ-LRNLPNPHLFNIVSLPPVDISALLDADASI 82 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 82 (481)
+.||+++|+|++||++|++.||+.|+.+.|..|||++++.+..... +. .......+++++.++|....+++-+.+.+.
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~ 82 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATI 82 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccH
Confidence 3599999999999999999999999954379999999886554321 11 221111125899999865543321222233
Q ss_pred HHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCc-eEEEechhHHHHHHHhhcccchhhhhccccC
Q 011608 83 VIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEML-KYVYIASNAWFLAATIYFPTIDKRLQEEHYG 161 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (481)
...+....+.+.+.++++|+++..+++|||+|.++.|+..+|+++||| .+.|++++++.+..++|+|........+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~~~ 162 (470)
T PLN03015 83 FTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEYVD 162 (470)
T ss_pred HHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccccccCC
Confidence 334555666777889999987655789999999999999999999999 6888888888887777776543322211111
Q ss_pred CCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhcc-CC---CCCeeeeC
Q 011608 162 RKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGI-SK---LPPIYPIG 237 (481)
Q Consensus 162 ~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~-~~---~p~~~~vG 237 (481)
..+++.+||+++++..+++..+.++....+..+.+..+...+++++++|||++||+..++.+.... .+ .|+++.||
T Consensus 163 ~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~VG 242 (470)
T PLN03015 163 IKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYPIG 242 (470)
T ss_pred CCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCceEEec
Confidence 123456899988999999876654443334555566666889999999999999999999887531 00 25699999
Q ss_pred CcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCC
Q 011608 238 PVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGD 317 (481)
Q Consensus 238 pl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 317 (481)
|++...... ..+++|.+|||++++++||||||||+...+++++.+++.+|+.++++|||+++.+.... +.... +
T Consensus 243 Pl~~~~~~~--~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~--~~~~~--~ 316 (470)
T PLN03015 243 PIVRTNVHV--EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYL--GASSS--D 316 (470)
T ss_pred CCCCCcccc--cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCcccc--ccccc--c
Confidence 998532111 13457999999999999999999999999999999999999999999999997542100 00000 0
Q ss_pred CCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHHHHHH
Q 011608 318 GSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAE 397 (481)
Q Consensus 318 ~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~ 397 (481)
.+.....+|++|.+|++++++++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.||+++++
T Consensus 317 --~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~ 394 (470)
T PLN03015 317 --DDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTE 394 (470)
T ss_pred --ccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHH
Confidence 000123589999999999999988999999999999999999999999999999999999999999999999999988
Q ss_pred hhceeEeccccCCCCccCHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 011608 398 ELGVAVRPNEMPTENLVKREEIEMMVRRILVD--KEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCE 468 (481)
Q Consensus 398 ~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~--~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (481)
.+|+|+++........+++++|+++|+++|.+ ++|+.+|+||++|++.+++|+++||++++++++|+.++.
T Consensus 395 ~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 395 EIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhcc
Confidence 99999998511111368999999999999963 568899999999999999999999999999999998874
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.2e-69 Score=535.81 Aligned_cols=436 Identities=28% Similarity=0.464 Sum_probs=333.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHH
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIV 83 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (481)
.+.||+++|+|++||++|++.||+.|+.+ |+.|||++++.+... ..... .+++|.++|..-.++. .......
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~-G~~VT~v~T~~n~~~---~~~~~---~~i~~~~ip~glp~~~-~~~~~~~ 77 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLK-GFSITIAQTKFNYFS---PSDDF---TDFQFVTIPESLPESD-FKNLGPI 77 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcC-CCEEEEEeCcccccc---cccCC---CCeEEEeCCCCCCccc-ccccCHH
Confidence 34899999999999999999999999999 999999999965421 11111 2688888875211100 0111122
Q ss_pred HHHHHHHHHhhHHHHHHHhhc----CCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhh-cc
Q 011608 84 IKIIFMMRESLPALRSSISTL----KPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQ-EE 158 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~----~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~-~~ 158 (481)
..+..+...+.+.+.+.++++ ..+++|||+|.++.|+..+|+++|||.+.|++++++.++.+.+++.+..... .+
T Consensus 78 ~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~ 157 (451)
T PLN02410 78 EFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAP 157 (451)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCC
Confidence 233334445566677777664 2357999999999999999999999999999999988877766544332100 00
Q ss_pred ccC--CCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeee
Q 011608 159 HYG--RKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPI 236 (481)
Q Consensus 159 ~~~--~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~v 236 (481)
... ......+|++++++..+++.............+ +......+++++++|||.+||+..++++.... -+++++|
T Consensus 158 ~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~--~~~v~~v 234 (451)
T PLN02410 158 LKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELY-RNTVDKRTASSVIINTASCLESSSLSRLQQQL--QIPVYPI 234 (451)
T ss_pred ccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHH-HHHhhcccCCEEEEeChHHhhHHHHHHHHhcc--CCCEEEe
Confidence 001 112335788877777777754332222222222 22223567889999999999999999987641 1479999
Q ss_pred CCcccCCC--CCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccc
Q 011608 237 GPVVRSMG--SSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFK 314 (481)
Q Consensus 237 Gpl~~~~~--~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~ 314 (481)
||++.... ......+++|.+|||++++++||||||||+...+.+++.+++.+|+.++++|||+++.+...
T Consensus 235 Gpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~-------- 306 (451)
T PLN02410 235 GPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVR-------- 306 (451)
T ss_pred cccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCccc--------
Confidence 99975421 11112345689999999999999999999999999999999999999999999999743110
Q ss_pred cCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHHH
Q 011608 315 VGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATM 394 (481)
Q Consensus 315 ~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~ 394 (481)
+......+|++|++|++++++ +.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.||++
T Consensus 307 -----~~~~~~~lp~~f~er~~~~g~-v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~ 380 (451)
T PLN02410 307 -----GSEWIESLPKEFSKIISGRGY-IVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARY 380 (451)
T ss_pred -----ccchhhcCChhHHHhccCCeE-EEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHH
Confidence 000113489999999987654 44999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 011608 395 LAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEM 469 (481)
Q Consensus 395 v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 469 (481)
+++.+|+|+.+. ..+++++|+++|+++|.+++|+.||+|+++|++++++++++||+++.++++||+++..
T Consensus 381 ~~~~~~~G~~~~-----~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 381 LECVWKIGIQVE-----GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHhCeeEEeC-----CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 976779999986 5689999999999999887788999999999999999999999999999999998753
No 4
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.1e-69 Score=539.58 Aligned_cols=443 Identities=28% Similarity=0.465 Sum_probs=342.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccH
Q 011608 3 TTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASI 82 (481)
Q Consensus 3 ~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 82 (481)
.+++||+++|+|++||++|++.||+.|+.+ |+.|||++++.+.+.+.+..... ++++++.++.+....+ +.+.+.
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~-G~~VTfv~T~~n~~~~~~~~~~~---~~i~~~~lp~P~~~~l-PdG~~~ 81 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALR-GLTITVLVTPKNLPFLNPLLSKH---PSIETLVLPFPSHPSI-PSGVEN 81 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHhhhcccC---CCeeEEeCCCCCcCCC-CCCCcC
Confidence 456999999999999999999999999999 99999999998776544322222 3588888776544333 443221
Q ss_pred --------HHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhh
Q 011608 83 --------VIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKR 154 (481)
Q Consensus 83 --------~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~ 154 (481)
...+........+.+.+++++...+++|||+|.++.|+..+|+++|||.+.|++++++.++.+.+++.....
T Consensus 82 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~ 161 (477)
T PLN02863 82 VKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPT 161 (477)
T ss_pred hhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccc
Confidence 112334444556677777776434789999999999999999999999999999999999888776421100
Q ss_pred hhccccCCCCC---ccCCCCcccCcccccccccCC--CchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCC
Q 011608 155 LQEEHYGRKQP---LMIPGCRSVRFQDTLEAFTDP--KDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISK 229 (481)
Q Consensus 155 ~~~~~~~~~~~---~~~pg~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~ 229 (481)
. .......+. ..+||++.++..+++..+... .......+.+..+....++++++|||.+||+..++++... .+
T Consensus 162 ~-~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-~~ 239 (477)
T PLN02863 162 K-INPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKE-LG 239 (477)
T ss_pred c-ccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhh-cC
Confidence 0 000011111 247888888888888755421 2223344444444456778899999999999999998764 12
Q ss_pred CCCeeeeCCcccCCC-C--------CCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 011608 230 LPPIYPIGPVVRSMG-S--------SHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVV 300 (481)
Q Consensus 230 ~p~~~~vGpl~~~~~-~--------~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 300 (481)
.++++.|||++.... . .....+++|.+||+++++++||||||||+...+.+++.+++.+|+.++++|||++
T Consensus 240 ~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~ 319 (477)
T PLN02863 240 HDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCV 319 (477)
T ss_pred CCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 257999999975321 0 0001246899999999889999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCccee
Q 011608 301 RPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLI 380 (481)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v 380 (481)
+.+... ......+|++|.++.+++|+++.+|+||.+||+|++|++|||||||||++||+++|||||
T Consensus 320 ~~~~~~--------------~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l 385 (477)
T PLN02863 320 KEPVNE--------------ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPML 385 (477)
T ss_pred CCCccc--------------ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEE
Confidence 754210 001235889999999988999999999999999999999999999999999999999999
Q ss_pred ecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHH
Q 011608 381 VWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNAL 460 (481)
Q Consensus 381 ~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~ 460 (481)
++|+++||+.||+++++.+|+|+++.. .+....+++++.++|+++|.+ ++.||+||+++++.+++|+++||++++++
T Consensus 386 ~~P~~~DQ~~na~~v~~~~gvG~~~~~-~~~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~~~l 462 (477)
T PLN02863 386 AWPMAADQFVNASLLVDELKVAVRVCE-GADTVPDSDELARVFMESVSE--NQVERERAKELRRAALDAIKERGSSVKDL 462 (477)
T ss_pred eCCccccchhhHHHHHHhhceeEEecc-CCCCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 999999999999998778999999852 111346899999999999942 34599999999999999999999999999
Q ss_pred HHHHHHHHH
Q 011608 461 SQVAKQCEM 469 (481)
Q Consensus 461 ~~~~~~~~~ 469 (481)
++||+++..
T Consensus 463 ~~~v~~i~~ 471 (477)
T PLN02863 463 DGFVKHVVE 471 (477)
T ss_pred HHHHHHHHH
Confidence 999999864
No 5
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=8e-69 Score=530.38 Aligned_cols=428 Identities=25% Similarity=0.418 Sum_probs=337.6
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCc
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADA 80 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (481)
|++.+.||+++|+|++||++|+++||+.|+.+ |+.|||++++.+.+.+.. ... ++++|+.++..-.++......
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~-G~~vT~v~t~~~~~~~~~---~~~--~~i~~~~ipdglp~~~~~~~~ 74 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSK-GFKTTHTLTTFIFNTIHL---DPS--SPISIATISDGYDQGGFSSAG 74 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcC-CCEEEEEECCchhhhccc---CCC--CCEEEEEcCCCCCCccccccc
Confidence 88999999999999999999999999999999 999999999976543221 111 358999987521110101111
Q ss_pred cHHHHHHHHHHHhhHHHHHHHhhc--CCCC-cEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhc
Q 011608 81 SIVIKIIFMMRESLPALRSSISTL--KPRP-TALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQE 157 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~-D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 157 (481)
+....+..+.+.+.+.++++|++. ..+| +|||+|.+++|+..+|+++|||.+.|++++++.+..+++ +....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~~~---- 149 (449)
T PLN02173 75 SVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYINN---- 149 (449)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHhcc----
Confidence 233334444446677888888764 1245 999999999999999999999999999988877755432 21110
Q ss_pred cccCCCCCccCCCCcccCcccccccccCCC--chhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeee
Q 011608 158 EHYGRKQPLMIPGCRSVRFQDTLEAFTDPK--DQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYP 235 (481)
Q Consensus 158 ~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~ 235 (481)
....+.+||+++++..+++..+.... ...+..+.+..+...+++++++|||.++|+..++++... ++++.
T Consensus 150 ----~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~----~~v~~ 221 (449)
T PLN02173 150 ----GSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV----CPVLT 221 (449)
T ss_pred ----CCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc----CCeeE
Confidence 11234578888888888887664322 223444555666778899999999999999999888643 47999
Q ss_pred eCCcccCC-------CCCC-----C--CCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEc
Q 011608 236 IGPVVRSM-------GSSH-----M--SENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVR 301 (481)
Q Consensus 236 vGpl~~~~-------~~~~-----~--~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 301 (481)
|||++... .... . ..+++|.+||+.+++++||||||||+...+.+++.+++.+| ++.+|+|+++
T Consensus 222 VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr 299 (449)
T PLN02173 222 IGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVR 299 (449)
T ss_pred EcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEe
Confidence 99997420 0000 0 12346999999999999999999999999999999999999 7788999996
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceee
Q 011608 302 PPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIV 381 (481)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~ 381 (481)
.+. ...+|++|.++..+.|+++.+|+||.+||+|++|++|||||||||++||+++|||||+
T Consensus 300 ~~~-------------------~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~ 360 (449)
T PLN02173 300 ASE-------------------ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVA 360 (449)
T ss_pred ccc-------------------hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEe
Confidence 431 1357889999987678888899999999999999999999999999999999999999
Q ss_pred cccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHH
Q 011608 382 WPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALS 461 (481)
Q Consensus 382 ~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~ 461 (481)
+|+++||+.||+++++.+|+|+.+..-+++..+++++|+++|+++|.+++|+.+|+||+++++.+++++++||+++++++
T Consensus 361 ~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~ 440 (449)
T PLN02173 361 MPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININ 440 (449)
T ss_pred cCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999999999777799999863111123699999999999999888899999999999999999999999999999
Q ss_pred HHHHHHH
Q 011608 462 QVAKQCE 468 (481)
Q Consensus 462 ~~~~~~~ 468 (481)
+|++++.
T Consensus 441 ~~v~~~~ 447 (449)
T PLN02173 441 TFVSKIQ 447 (449)
T ss_pred HHHHHhc
Confidence 9999874
No 6
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=9.7e-69 Score=537.93 Aligned_cols=454 Identities=36% Similarity=0.603 Sum_probs=351.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCC----CeEEEEecCCCch----hhhhhccC-CCCCCceEEEecCCCCCCCC
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQND----FQVTIFVVATDTS----TVQSQLRN-LPNPHLFNIVSLPPVDISAL 75 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~G----h~Vt~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~i~~~~~~~~ 75 (481)
+.|||++|+|++||++|++.||+.|+.+ | +.|||++++.+.+ .+.+.+.. .....+++|.++|....
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~-g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~--- 78 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLAS-SGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEP--- 78 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhC-CCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCC---
Confidence 3599999999999999999999999999 6 7999999986543 22222221 11112589999986432
Q ss_pred CCCCc-cHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhh
Q 011608 76 LDADA-SIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKR 154 (481)
Q Consensus 76 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~ 154 (481)
+.+. +....+..+...+.+.++++++++..+++|||+|.++.|+..+|+++|||.+.|+++++..++.+.++|.....
T Consensus 79 -p~~~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 157 (480)
T PLN00164 79 -PTDAAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEE 157 (480)
T ss_pred -CCccccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhccc
Confidence 2222 22233444556677788888887633569999999999999999999999999999999999988887654332
Q ss_pred hhccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhcc--CC--C
Q 011608 155 LQEEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGI--SK--L 230 (481)
Q Consensus 155 ~~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~--~~--~ 230 (481)
..........++.+||+++++..+++..+..+....+..+....+...+++++++|||.+||+...+.+.... ++ .
T Consensus 158 ~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~ 237 (480)
T PLN00164 158 VAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGRPA 237 (480)
T ss_pred ccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccccCCC
Confidence 2111111113345889888888898876554433334445555566788999999999999999999887641 22 3
Q ss_pred CCeeeeCCcccCC-CCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCC
Q 011608 231 PPIYPIGPVVRSM-GSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVS 309 (481)
Q Consensus 231 p~~~~vGpl~~~~-~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 309 (481)
|+++.|||++... .......+++|.+|||++++++||||||||+...+.+++.+++.+|+.++++|||+++.+...+
T Consensus 238 ~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~-- 315 (480)
T PLN00164 238 PTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAG-- 315 (480)
T ss_pred CceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccc--
Confidence 5799999998431 1111124568999999999999999999999999999999999999999999999997542100
Q ss_pred CcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchh
Q 011608 310 GSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQK 389 (481)
Q Consensus 310 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~ 389 (481)
. ....+. . ....+|++|.++++++++++.+|+||.+||+|++|++|||||||||++||+++|||||+||+++||+
T Consensus 316 -~-~~~~~~-~--~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~ 390 (480)
T PLN00164 316 -S-RHPTDA-D--LDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQH 390 (480)
T ss_pred -c-cccccc-c--hhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccch
Confidence 0 000000 0 1124889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhceeEeccccCC-CCccCHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 011608 390 MNATMLAEELGVAVRPNEMPT-ENLVKREEIEMMVRRILVDK--EGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQ 466 (481)
Q Consensus 390 ~na~~v~~~~G~g~~~~~~~~-~~~~~~~~l~~al~~vl~~~--~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 466 (481)
.||+++++.+|+|+.++..++ ++.+++++|+++|+++|.++ +|+.+|+||++|++.+++++++||++++++++|+++
T Consensus 391 ~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~ 470 (480)
T PLN00164 391 LNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLARE 470 (480)
T ss_pred hHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 999988678999999853111 12479999999999999874 488999999999999999999999999999999999
Q ss_pred HHHH
Q 011608 467 CEMS 470 (481)
Q Consensus 467 ~~~~ 470 (481)
+...
T Consensus 471 ~~~~ 474 (480)
T PLN00164 471 IRHG 474 (480)
T ss_pred HHhc
Confidence 8654
No 7
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=7.2e-68 Score=527.85 Aligned_cols=447 Identities=24% Similarity=0.399 Sum_probs=342.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh--c-cC--CCC-CCceEEEecCCCCCCCCC
Q 011608 3 TTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ--L-RN--LPN-PHLFNIVSLPPVDISALL 76 (481)
Q Consensus 3 ~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~--~-~~--~~~-~~~~~~~~i~~~~~~~~~ 76 (481)
+.+.||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+.+. + .. ... ...++|..++. ++
T Consensus 5 ~~~~HVv~~PfpaqGHi~Pml~lA~~La~~-G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pd----gl- 78 (480)
T PLN02555 5 SSLVHVMLVSFPGQGHVNPLLRLGKLLASK-GLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFED----GW- 78 (480)
T ss_pred CCCCEEEEECCcccccHHHHHHHHHHHHhC-CCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCC----CC-
Confidence 345999999999999999999999999999 9999999999766554321 1 10 010 01245555543 11
Q ss_pred CCC----ccHHHHHHHHHHHhhHHHHHHHhhcC--CC-CcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcc
Q 011608 77 DAD----ASIVIKIIFMMRESLPALRSSISTLK--PR-PTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFP 149 (481)
Q Consensus 77 ~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~--~~-~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p 149 (481)
+.+ .+....+..+...+.+.+.++|+++. .+ ++|||+|.++.|+..+|+++|||.++|++++++.++.+.+++
T Consensus 79 p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 79 AEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred CCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 221 12222333344455677777777641 24 499999999999999999999999999999999988877764
Q ss_pred cchhhhhccccCCCCCccCCCCcccCcccccccccC--CCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhcc
Q 011608 150 TIDKRLQEEHYGRKQPLMIPGCRSVRFQDTLEAFTD--PKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGI 227 (481)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 227 (481)
.-...... ......++.+||+++++..+++.++.. .....+..+.+..+...+++++++|||.+||+..+..+...
T Consensus 159 ~~~~~~~~-~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~- 236 (480)
T PLN02555 159 HGLVPFPT-ETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKL- 236 (480)
T ss_pred hcCCCccc-ccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhC-
Confidence 31101110 000112356899888888999876542 12233444556666778899999999999999999888653
Q ss_pred CCCCCeeeeCCcccCCCC--C---C--CCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 011608 228 SKLPPIYPIGPVVRSMGS--S---H--MSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVV 300 (481)
Q Consensus 228 ~~~p~~~~vGpl~~~~~~--~---~--~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 300 (481)
. +++.|||++..... . . ...+++|.+||+++++++||||||||+...+.+++.+++.+++.++++|||++
T Consensus 237 --~-~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~ 313 (480)
T PLN02555 237 --C-PIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVM 313 (480)
T ss_pred --C-CEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 3 49999999743110 1 0 12457899999999888999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCccee
Q 011608 301 RPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLI 380 (481)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v 380 (481)
+..... .......+|++|.++.++. ..+.+|+||.+||.|++|++|||||||||++||+++|||||
T Consensus 314 ~~~~~~-------------~~~~~~~lp~~~~~~~~~~-g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l 379 (480)
T PLN02555 314 RPPHKD-------------SGVEPHVLPEEFLEKAGDK-GKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVV 379 (480)
T ss_pred ecCccc-------------ccchhhcCChhhhhhcCCc-eEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEE
Confidence 743110 0001235888998887654 46669999999999999999999999999999999999999
Q ss_pred ecccccchhhhHHHHHHhhceeEeccccC-CCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 011608 381 VWPLYAEQKMNATMLAEELGVAVRPNEMP-TENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNA 459 (481)
Q Consensus 381 ~~P~~~DQ~~na~~v~~~~G~g~~~~~~~-~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~ 459 (481)
++|+++||+.||+++++.+|+|+++...+ ....+++++|+++|+++|.+++|+.+|+||++|++.+++|+++||+++.+
T Consensus 380 ~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~ 459 (480)
T PLN02555 380 CFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRN 459 (480)
T ss_pred eCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 99999999999999977789999994210 11468999999999999988888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 011608 460 LSQVAKQCEMSLQGL 474 (481)
Q Consensus 460 ~~~~~~~~~~~~~~~ 474 (481)
+++||+++....+.|
T Consensus 460 l~~~v~~i~~~~~~~ 474 (480)
T PLN02555 460 FQEFVDKLVRKSVEI 474 (480)
T ss_pred HHHHHHHHHhcccee
Confidence 999999998775544
No 8
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.1e-67 Score=527.10 Aligned_cols=431 Identities=23% Similarity=0.387 Sum_probs=330.9
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHH--HHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCC
Q 011608 2 QTTKTHIALLASPGMGHFIPVLELGKR--FATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDAD 79 (481)
Q Consensus 2 ~~~~~~vvl~~~p~~GHi~P~l~La~~--L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 79 (481)
.+++.||+++|+|++||++|++.||++ |++| |++|||++++.+.+.+.+ ..... ..+++..++. ++ +.+
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~-G~~VT~v~t~~~~~~~~~-~~~~~--~~~~~~~~~~----gl-p~~ 75 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSK-NLHFTLATTEQARDLLST-VEKPR--RPVDLVFFSD----GL-PKD 75 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcC-CcEEEEEeccchhhhhcc-ccCCC--CceEEEECCC----CC-CCC
Confidence 345689999999999999999999999 5699 999999999977655321 11101 2466666653 22 322
Q ss_pred c--cHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhc
Q 011608 80 A--SIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQE 157 (481)
Q Consensus 80 ~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 157 (481)
. +....+..+.+.+.+.+++++++. ++||||+|.++.|+..+|+++|||.++|++.++..+....+++......+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~- 152 (456)
T PLN02210 76 DPRAPETLLKSLNKVGAKNLSKIIEEK--RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFP- 152 (456)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHhcC--CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCC-
Confidence 1 222233334445566778888776 89999999999999999999999999999999888887665532111111
Q ss_pred cccCCCCCccCCCCcccCcccccccccCCCchhHHHHH-HHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeee
Q 011608 158 EHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYL-RIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPI 236 (481)
Q Consensus 158 ~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~v 236 (481)
.......+..+|+++++...+++..+.......+.... +..+....++++++|||.++|+..++.+... +++++|
T Consensus 153 ~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~----~~v~~V 228 (456)
T PLN02210 153 DLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL----KPVIPI 228 (456)
T ss_pred cccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc----CCEEEE
Confidence 11111123458888778888888765544333333333 3334456788999999999999999887653 479999
Q ss_pred CCcccC----CCC----C-----CCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCC
Q 011608 237 GPVVRS----MGS----S-----HMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPP 303 (481)
Q Consensus 237 Gpl~~~----~~~----~-----~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 303 (481)
||++.. ... . ....+++|.+||+++++++||||||||+...+.+++++++.+|+.++.+|||+++..
T Consensus 229 GPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~ 308 (456)
T PLN02210 229 GPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPK 308 (456)
T ss_pred cccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 999742 110 0 012356799999999889999999999988999999999999999999999999643
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCchhHHhhhc-CCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeec
Q 011608 304 MDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNA-KMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVW 382 (481)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~ 382 (481)
.. ...+.+|.++.+ +++ ++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 309 ~~-------------------~~~~~~~~~~~~~~~g-~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~ 368 (456)
T PLN02210 309 EK-------------------AQNVQVLQEMVKEGQG-VVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAY 368 (456)
T ss_pred cc-------------------ccchhhHHhhccCCCe-EEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEec
Confidence 11 122356666663 445 456999999999999999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHH
Q 011608 383 PLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQ 462 (481)
Q Consensus 383 P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~ 462 (481)
|+++||+.||+++++.+|+|++++..+.++.+++++|+++|+++|.+++|+.||+||++|++.+++|+++||++++++++
T Consensus 369 P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~ 448 (456)
T PLN02210 369 PSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDL 448 (456)
T ss_pred ccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999996459999998631111468999999999999988889999999999999999999999999999999
Q ss_pred HHHHHH
Q 011608 463 VAKQCE 468 (481)
Q Consensus 463 ~~~~~~ 468 (481)
||+++.
T Consensus 449 ~v~~~~ 454 (456)
T PLN02210 449 FISDIT 454 (456)
T ss_pred HHHHHh
Confidence 999875
No 9
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.9e-67 Score=522.38 Aligned_cols=442 Identities=29% Similarity=0.594 Sum_probs=335.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC--CeEEEEecCCCch-hhhhhccCC-CCCCceEEEecCCCCCCCCCCCCcc
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQND--FQVTIFVVATDTS-TVQSQLRNL-PNPHLFNIVSLPPVDISALLDADAS 81 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~G--h~Vt~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~ 81 (481)
.||+++|+|++||++|++.||+.|+.+ | ..|||++++.+.+ .+.+.+... ...++++|+.+|.......-....+
T Consensus 4 ~hvv~~P~p~qGHi~P~l~lA~~La~~-gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~ 82 (468)
T PLN02207 4 AELIFIPTPTVGHLVPFLEFARRLIEQ-DDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQS 82 (468)
T ss_pred cEEEEeCCcchhhHHHHHHHHHHHHhC-CCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccccC
Confidence 699999999999999999999999999 7 9999999997652 222222211 1113699999984322111001112
Q ss_pred HHHHHHHHHHHh----hHHHHHHHhhcC---CCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhh
Q 011608 82 IVIKIIFMMRES----LPALRSSISTLK---PRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKR 154 (481)
Q Consensus 82 ~~~~~~~~~~~~----~~~~~~~l~~~~---~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~ 154 (481)
....+....... .+.+.+++++.. .+++|||+|.++.|+..+|+++|||.+.|+++++..++...+.|.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~~ 162 (468)
T PLN02207 83 VEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHSK 162 (468)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcccc
Confidence 333333444444 334555555431 2348999999999999999999999999999999988888777654321
Q ss_pred hhcc-ccCCCCCccCCCC-cccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCC
Q 011608 155 LQEE-HYGRKQPLMIPGC-RSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPP 232 (481)
Q Consensus 155 ~~~~-~~~~~~~~~~pg~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~ 232 (481)
.... ......++.+||+ ++++..+++.++.... . +..+.+.....++++++++||+.++|...+..+... +..|+
T Consensus 163 ~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~-~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~-~~~p~ 239 (468)
T PLN02207 163 DTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED-G-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDE-QNYPS 239 (468)
T ss_pred ccccCcCCCCCeEECCCCCCCCChHHCcchhcCCc-c-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhc-cCCCc
Confidence 1000 0011133568997 5789999887664222 1 444555556678899999999999999998888542 23567
Q ss_pred eeeeCCcccCCCCCCC----CCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCC
Q 011608 233 IYPIGPVVRSMGSSHM----SENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDV 308 (481)
Q Consensus 233 ~~~vGpl~~~~~~~~~----~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 308 (481)
++.|||++..+..+.. ..+++|.+|||++++++||||||||+...+.+++++++.+|+.++++|||+++.+..
T Consensus 240 v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~--- 316 (468)
T PLN02207 240 VYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEV--- 316 (468)
T ss_pred EEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCc---
Confidence 9999999864321110 123679999999988999999999999999999999999999999999999974311
Q ss_pred CCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccch
Q 011608 309 SGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQ 388 (481)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ 388 (481)
. ..+.+|++|.++.++++ .+.+|+||.+||+|+++++|||||||||++||+++|||||+||+++||
T Consensus 317 -----------~--~~~~lp~~f~er~~~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ 382 (468)
T PLN02207 317 -----------T--NDDLLPEGFLDRVSGRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQ 382 (468)
T ss_pred -----------c--ccccCCHHHHhhcCCCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccc
Confidence 0 12468999999887755 555999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhceeEeccc---cCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 011608 389 KMNATMLAEELGVAVRPNE---MPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAK 465 (481)
Q Consensus 389 ~~na~~v~~~~G~g~~~~~---~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 465 (481)
+.||+++++.+|+|+++.. ++.+..+++++|+++|+++|.+ +++.||+||++|++.+++|+.+||++++++++|++
T Consensus 383 ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~ 461 (468)
T PLN02207 383 QLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIH 461 (468)
T ss_pred hhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999998766999997741 1111346999999999999963 36679999999999999999999999999999999
Q ss_pred HHHH
Q 011608 466 QCEM 469 (481)
Q Consensus 466 ~~~~ 469 (481)
++..
T Consensus 462 ~~~~ 465 (468)
T PLN02207 462 DVIG 465 (468)
T ss_pred HHHh
Confidence 8753
No 10
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.9e-67 Score=522.96 Aligned_cols=440 Identities=24% Similarity=0.392 Sum_probs=335.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCcc--
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADAS-- 81 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-- 81 (481)
.++||+++|+|++||++|++.||+.|+.| |+.|||++++.+...+.+...... .+++++.++.+..+++ +++.+
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~~~~~~~~~--~~i~~~~lp~p~~dgl-p~~~~~~ 80 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQK-GHKISFISTPRNLHRLPKIPSQLS--SSITLVSFPLPSVPGL-PSSAESS 80 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhC-CCEEEEEeCCchHHhhhhccccCC--CCeeEEECCCCccCCC-CCCcccc
Confidence 34799999999999999999999999999 999999999976654332111111 3589999986554444 43321
Q ss_pred --H----HHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhh
Q 011608 82 --I----VIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRL 155 (481)
Q Consensus 82 --~----~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~ 155 (481)
. ...+....+.+.+.+++++++. +++|||+|.++.|+..+|+++|||.+.|+++++..++.+.+.+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~ 158 (472)
T PLN02670 81 TDVPYTKQQLLKKAFDLLEPPLTTFLETS--KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGG 158 (472)
T ss_pred cccchhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcc
Confidence 1 1123345556677888888887 8999999999999999999999999999999988887765433221110
Q ss_pred hccccCCCCCc-cCCCCcc------cCcccccccccCC--CchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhc
Q 011608 156 QEEHYGRKQPL-MIPGCRS------VRFQDTLEAFTDP--KDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDG 226 (481)
Q Consensus 156 ~~~~~~~~~~~-~~pg~~~------~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~ 226 (481)
......+.. .+|+..+ +...+++.++... .......+.+......+++++++|||.+||+.+++.+...
T Consensus 159 --~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~ 236 (472)
T PLN02670 159 --DLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDL 236 (472)
T ss_pred --cCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHh
Confidence 000111111 2343322 3445666554321 1122334445555567889999999999999999998754
Q ss_pred cCCCCCeeeeCCcccC--CCCCCC----CCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 011608 227 ISKLPPIYPIGPVVRS--MGSSHM----SENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVV 300 (481)
Q Consensus 227 ~~~~p~~~~vGpl~~~--~~~~~~----~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 300 (481)
. .++++.|||+... ...... ..+++|.+|||++++++||||||||+...+.+++.+++.+|+.++++|||++
T Consensus 237 ~--~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~ 314 (472)
T PLN02670 237 Y--RKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVL 314 (472)
T ss_pred h--CCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 1 1479999999753 111100 0126799999999889999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCccee
Q 011608 301 RPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLI 380 (481)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v 380 (481)
+.+... ..+....+|++|.++++++++++.+|+||.+||+|++|++|||||||||++||+++|||||
T Consensus 315 r~~~~~-------------~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l 381 (472)
T PLN02670 315 RNEPGT-------------TQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLI 381 (472)
T ss_pred cCCccc-------------ccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEE
Confidence 753210 0001236899999999999999999999999999999999999999999999999999999
Q ss_pred ecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHH
Q 011608 381 VWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNAL 460 (481)
Q Consensus 381 ~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~ 460 (481)
++|+++||+.||+++ +++|+|++++..+.++.+++++|+++|+++|.+++|+.||+||+++++. ++..+...+.+
T Consensus 382 ~~P~~~DQ~~Na~~v-~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~----~~~~~~~~~~~ 456 (472)
T PLN02670 382 LFPVLNEQGLNTRLL-HGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNL----FGDMDRNNRYV 456 (472)
T ss_pred eCcchhccHHHHHHH-HHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHH----HhCcchhHHHH
Confidence 999999999999999 6899999996422113589999999999999888788899999999999 55678899999
Q ss_pred HHHHHHHHHHH
Q 011608 461 SQVAKQCEMSL 471 (481)
Q Consensus 461 ~~~~~~~~~~~ 471 (481)
++|+.+++.+.
T Consensus 457 ~~~~~~l~~~~ 467 (472)
T PLN02670 457 DELVHYLRENR 467 (472)
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 11
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=4.4e-67 Score=522.82 Aligned_cols=444 Identities=28% Similarity=0.469 Sum_probs=335.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCC-CCCCceEEEecCCCCCC-CCCCCCcc-
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNL-PNPHLFNIVSLPPVDIS-ALLDADAS- 81 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~-~~~~~~~~- 81 (481)
++||+++|+|++||++|++.||+.|+.+ |+.|||++++.+...+.+..... ..+..++|+++|.+... ++ +++.+
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dgl-p~~~~~ 85 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAER-GVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGL-PIGCEN 85 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhC-CCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCC-CCCccc
Confidence 4799999999999999999999999999 99999999997765544332211 11124889999855432 33 43321
Q ss_pred --------HHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchh
Q 011608 82 --------IVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDK 153 (481)
Q Consensus 82 --------~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~ 153 (481)
....+........+.+.++|++...+++|||+|.++.|+..+|+++|||.+.|++++++.+....++.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~ 165 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNA 165 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcc
Confidence 111223334455677777777643478999999999999999999999999999998887765432211100
Q ss_pred hhhccccCCCCCccCCCCcc---cCcccccccccCCCchhHHHHHHHhhh-hcccceEEecChhhhcHHHHHHHHhccCC
Q 011608 154 RLQEEHYGRKQPLMIPGCRS---VRFQDTLEAFTDPKDQLFDEYLRIGLE-MVTADGILINTWEDLEPTTLASLRDGISK 229 (481)
Q Consensus 154 ~~~~~~~~~~~~~~~pg~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~l~~~~~~~~~~~~~~ 229 (481)
.. .......++.+|++++ ++..+++..+.... ....+...... .+.++++++|||.+||+..++.+....
T Consensus 166 ~~--~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~-- 239 (491)
T PLN02534 166 HL--SVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLP--DLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAI-- 239 (491)
T ss_pred cc--cCCCCCceeecCCCCccccccHHHCChhhcCcc--cHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhc--
Confidence 00 0111123455777653 66777765443221 12333333332 345779999999999999999887541
Q ss_pred CCCeeeeCCcccCCC---CC---C--CC-CchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 011608 230 LPPIYPIGPVVRSMG---SS---H--MS-ENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVV 300 (481)
Q Consensus 230 ~p~~~~vGpl~~~~~---~~---~--~~-~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 300 (481)
.++++.|||++.... .. . .. .+++|.+|||++++++||||||||+....++++.+++.+|+.++++|||++
T Consensus 240 ~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~ 319 (491)
T PLN02534 240 KKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVI 319 (491)
T ss_pred CCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 146999999974211 00 0 01 235799999999989999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCccee
Q 011608 301 RPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLI 380 (481)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v 380 (481)
+.+... .+.....+|++|.+++++.|+++.+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 320 r~~~~~-------------~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v 386 (491)
T PLN02534 320 KTGEKH-------------SELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMI 386 (491)
T ss_pred ecCccc-------------cchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEE
Confidence 743110 0000124689999998888999999999999999999999999999999999999999999
Q ss_pred ecccccchhhhHHHHHHhhceeEeccc-----cC-CC---CccCHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHH
Q 011608 381 VWPLYAEQKMNATMLAEELGVAVRPNE-----MP-TE---NLVKREEIEMMVRRILV--DKEGQALRSRVKELKHSAKKA 449 (481)
Q Consensus 381 ~~P~~~DQ~~na~~v~~~~G~g~~~~~-----~~-~~---~~~~~~~l~~al~~vl~--~~~~~~~r~~a~~l~~~~~~~ 449 (481)
++|+++||+.||+++++.+|+|+++.. +. ++ ..+++++|+++|+++|. +++|+.+|+||++|++.++++
T Consensus 387 ~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~A 466 (491)
T PLN02534 387 TWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKA 466 (491)
T ss_pred eccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998741 00 10 13799999999999997 466889999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHH
Q 011608 450 STKGGSSYNALSQVAKQCEM 469 (481)
Q Consensus 450 ~~~~g~~~~~~~~~~~~~~~ 469 (481)
+.+||++++++++||+++..
T Consensus 467 v~~GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 467 MELGGSSHINLSILIQDVLK 486 (491)
T ss_pred hcCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999963
No 12
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1e-67 Score=522.87 Aligned_cols=440 Identities=32% Similarity=0.600 Sum_probs=331.8
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCC--CeEEEEe--cCCCchhhhhhccCC-CCCCceEEEecCCCCC-CC
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQND--FQVTIFV--VATDTSTVQSQLRNL-PNPHLFNIVSLPPVDI-SA 74 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~G--h~Vt~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~-~~ 74 (481)
|+.. ||+++|+|++||++|++.||+.|+.+ | +.||+.. ++.+...+.+.+... ...++++|+.+|.... ++
T Consensus 1 ~~~~--Hvvl~P~p~qGHi~P~l~LA~~La~~-g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~ 77 (451)
T PLN03004 1 MGEE--AIVLYPAPPIGHLVSMVELGKTILSK-NPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSS 77 (451)
T ss_pred CCCc--EEEEeCCcccchHHHHHHHHHHHHhC-CCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCC
Confidence 4554 99999999999999999999999999 8 5566644 433222211111111 1113699999986432 12
Q ss_pred CCCCCccHHHHHHHHHHHhhHHHHHHHhhc-C-CCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccch
Q 011608 75 LLDADASIVIKIIFMMRESLPALRSSISTL-K-PRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTID 152 (481)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~ 152 (481)
......+....+........+.+.++|+++ . .+++|||+|.++.|+..+|+++|||.++|++++++.++.+.++|...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~ 157 (451)
T PLN03004 78 SSTSRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTID 157 (451)
T ss_pred ccccccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcc
Confidence 101111222334444556667778888776 2 24599999999999999999999999999999999999888776433
Q ss_pred hhhhccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCC
Q 011608 153 KRLQEEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPP 232 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~ 232 (481)
...+........++.+||+++++..+++..+..+....+..+.+......+++++++|||.+||+..++.+.... ..++
T Consensus 158 ~~~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~-~~~~ 236 (451)
T PLN03004 158 ETTPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEEL-CFRN 236 (451)
T ss_pred ccccccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcC-CCCC
Confidence 221111001112356889888888999877655444444555555666778889999999999999999886531 1247
Q ss_pred eeeeCCcccCCC-C-CCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCC
Q 011608 233 IYPIGPVVRSMG-S-SHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSG 310 (481)
Q Consensus 233 ~~~vGpl~~~~~-~-~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 310 (481)
++.|||++.... . .....+.+|.+|||++++++||||||||+...+.+++++++.+|+.++++|||+++.+...
T Consensus 237 v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~---- 312 (451)
T PLN03004 237 IYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPEL---- 312 (451)
T ss_pred EEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccc----
Confidence 999999975321 1 1011235699999999889999999999999999999999999999999999999753110
Q ss_pred cccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhh
Q 011608 311 SFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKM 390 (481)
Q Consensus 311 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~ 390 (481)
+.........+|++|++|++++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 313 ------~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~ 386 (451)
T PLN03004 313 ------EKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRF 386 (451)
T ss_pred ------cccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchh
Confidence 00000011238999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHH
Q 011608 391 NATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYN 458 (481)
Q Consensus 391 na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~ 458 (481)
||+++++++|+|++++.. +...+++++|+++|+++|.|++ ||+|++++++.++.|+++||++++
T Consensus 387 na~~~~~~~g~g~~l~~~-~~~~~~~e~l~~av~~vm~~~~---~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 387 NRVMIVDEIKIAISMNES-ETGFVSSTEVEKRVQEIIGECP---VRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hHHHHHHHhCceEEecCC-cCCccCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999996578999999731 1135799999999999998766 999999999999999999999864
No 13
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=4.8e-67 Score=518.96 Aligned_cols=425 Identities=22% Similarity=0.349 Sum_probs=325.4
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCc
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADA 80 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (481)
|++. +||+++|+|++||++|++.||+.|+++ ||+|||++++.+...+.+. ...+ .++++..++....+++ +.+.
T Consensus 1 ~~~~-~hvv~~P~paqGHi~P~l~LAk~La~~-G~~VT~vtt~~~~~~i~~~-~a~~--~~i~~~~l~~p~~dgL-p~g~ 74 (442)
T PLN02208 1 MEPK-FHAFMFPWFAFGHMIPFLHLANKLAEK-GHRVTFLLPKKAQKQLEHH-NLFP--DSIVFHPLTIPPVNGL-PAGA 74 (442)
T ss_pred CCCC-CEEEEecCccccHHHHHHHHHHHHHhC-CCEEEEEeccchhhhhhcc-cCCC--CceEEEEeCCCCccCC-CCCc
Confidence 5554 899999999999999999999999999 9999999998766554332 1111 2466666554322233 4332
Q ss_pred c----HH----HHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccch
Q 011608 81 S----IV----IKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTID 152 (481)
Q Consensus 81 ~----~~----~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~ 152 (481)
+ .. ..+........+.+++++++. ++||||+| ++.|+..+|+++|||++.|+++++..+. +.+.|..
T Consensus 75 ~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~--~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~- 149 (442)
T PLN02208 75 ETTSDIPISMDNLLSEALDLTRDQVEAAVRAL--RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGG- 149 (442)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCcc-
Confidence 1 11 123334556667788888877 89999999 5889999999999999999999888664 4444420
Q ss_pred hhhhccccCCCCCccCCCCcc----cCcccccccccCCCchhHHHHHHH-hhhhcccceEEecChhhhcHHHHHHHHhcc
Q 011608 153 KRLQEEHYGRKQPLMIPGCRS----VRFQDTLEAFTDPKDQLFDEYLRI-GLEMVTADGILINTWEDLEPTTLASLRDGI 227 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~pg~~~----~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 227 (481)
.. ..++||++. ++..+++.+ ......+..+.+. .+...+++++++|||.+||+.+++++....
T Consensus 150 -~~---------~~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~ 217 (442)
T PLN02208 150 -KL---------GVPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQY 217 (442)
T ss_pred -cc---------CCCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhc
Confidence 00 012455543 344455532 1222223333332 245668899999999999999998886531
Q ss_pred CCCCCeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCC
Q 011608 228 SKLPPIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDND 307 (481)
Q Consensus 228 ~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 307 (481)
.|+++.|||++...... ...+++|.+|||++++++||||||||+...+.+++.+++.+++..+.+++|+++.+...
T Consensus 218 --~~~v~~vGpl~~~~~~~-~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~- 293 (442)
T PLN02208 218 --HKKVLLTGPMFPEPDTS-KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS- 293 (442)
T ss_pred --CCCEEEEeecccCcCCC-CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc-
Confidence 25799999998643211 12578999999999889999999999998999999999999999999999999753110
Q ss_pred CCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccc
Q 011608 308 VSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAE 387 (481)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~D 387 (481)
.. ....+|++|.++++++|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++|
T Consensus 294 ------------~~-~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~D 360 (442)
T PLN02208 294 ------------ST-VQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSD 360 (442)
T ss_pred ------------cc-hhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchh
Confidence 00 12468999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 011608 388 QKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK--EGQALRSRVKELKHSAKKASTKGGSSYNALSQVAK 465 (481)
Q Consensus 388 Q~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~--~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 465 (481)
|+.||+++++.+|+|+.++.- +++.+++++|+++|+++|.++ .|+.+|++++++++.+ .++|++++++++||+
T Consensus 361 Q~~na~~~~~~~g~gv~~~~~-~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~----~~~gsS~~~l~~~v~ 435 (442)
T PLN02208 361 QVLFTRLMTEEFEVSVEVSRE-KTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEIL----VSPGLLTGYVDKFVE 435 (442)
T ss_pred hHHHHHHHHHHhceeEEeccc-cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH----hcCCcHHHHHHHHHH
Confidence 999999986669999998731 112389999999999999874 4899999999999995 457899999999999
Q ss_pred HHHHH
Q 011608 466 QCEMS 470 (481)
Q Consensus 466 ~~~~~ 470 (481)
++++.
T Consensus 436 ~l~~~ 440 (442)
T PLN02208 436 ELQEY 440 (442)
T ss_pred HHHHh
Confidence 98653
No 14
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=4.6e-67 Score=522.06 Aligned_cols=426 Identities=23% Similarity=0.361 Sum_probs=330.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHH
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVI 84 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (481)
+.||+++|+|++||++|+++||+.|+.+ |+.|||++++.+.+.+.+..... ++++|+.+|....++. ..+..
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~~~~~~~~~---~~i~~v~lp~g~~~~~---~~~~~- 77 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSR-GFEPVVITPEFIHRRISATLDPK---LGITFMSISDGQDDDP---PRDFF- 77 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhC-CCEEEEEeCcchhhhhhhccCCC---CCEEEEECCCCCCCCc---cccHH-
Confidence 3699999999999999999999999999 99999999997765443322221 3689999985322111 11222
Q ss_pred HHHHHH-HHhhHHHHHHHhhcC--CCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhcccc-
Q 011608 85 KIIFMM-RESLPALRSSISTLK--PRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHY- 160 (481)
Q Consensus 85 ~~~~~~-~~~~~~~~~~l~~~~--~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~- 160 (481)
.+.... ..+.+.+.++++++. .+++|||+|.+..|+..+|+++|||.+.|+++++..++.+.+.|...........
T Consensus 78 ~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~ 157 (448)
T PLN02562 78 SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETG 157 (448)
T ss_pred HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccccc
Confidence 223333 356778888888762 2458999999999999999999999999999998888877666543221100000
Q ss_pred --CCCCCc-cCCCCcccCcccccccccCC--CchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhcc--CCCCCe
Q 011608 161 --GRKQPL-MIPGCRSVRFQDTLEAFTDP--KDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGI--SKLPPI 233 (481)
Q Consensus 161 --~~~~~~-~~pg~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~--~~~p~~ 233 (481)
...+++ .+||++.++..+++.++... ....+..+.+..+...+++++++|||.+||+..+..+.... +..|++
T Consensus 158 ~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v 237 (448)
T PLN02562 158 CPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQI 237 (448)
T ss_pred ccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCE
Confidence 011122 47888778888888765432 22335556666667778899999999999998888765432 224679
Q ss_pred eeeCCcccCCCC----CC-CCCchhhhhhhccCCCCcEEEEEeCCCC-CCChHHHHHHHHHHHhCCCcEEEEEcCCCCCC
Q 011608 234 YPIGPVVRSMGS----SH-MSENSSLLEWLDMQPTESVIYVSFGGGG-TLSANQMIEVAWGLELSQQRFIWVVRPPMDND 307 (481)
Q Consensus 234 ~~vGpl~~~~~~----~~-~~~~~~~~~~l~~~~~~~vv~vs~GS~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 307 (481)
+.|||++..... .. ...+.+|.+||+++++++||||||||+. ..+.+++++++.+|++++++|||+++.+.
T Consensus 238 ~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~--- 314 (448)
T PLN02562 238 LQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW--- 314 (448)
T ss_pred EEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc---
Confidence 999999864311 10 1234568899999988899999999985 67899999999999999999999996431
Q ss_pred CCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccc
Q 011608 308 VSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAE 387 (481)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~D 387 (481)
.+.+|++|.++.++ |+.+.+|+||.+||+|++|++|||||||||++||+++|||||++|+++|
T Consensus 315 ----------------~~~l~~~~~~~~~~-~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~D 377 (448)
T PLN02562 315 ----------------REGLPPGYVERVSK-QGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGD 377 (448)
T ss_pred ----------------hhhCCHHHHHHhcc-CEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccc
Confidence 13578899888865 5566699999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011608 388 QKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQC 467 (481)
Q Consensus 388 Q~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 467 (481)
|+.||+++++.+|+|+.+. ++++++|+++|+++|.|++ ||+||+++++++..+ ..||++++++++||+++
T Consensus 378 Q~~na~~~~~~~g~g~~~~------~~~~~~l~~~v~~~l~~~~---~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 378 QFVNCAYIVDVWKIGVRIS------GFGQKEVEEGLRKVMEDSG---MGERLMKLRERAMGE-EARLRSMMNFTTLKDEL 447 (448)
T ss_pred hHHHHHHHHHHhCceeEeC------CCCHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHh
Confidence 9999999965589998873 3799999999999998876 999999999998876 66799999999999986
Q ss_pred H
Q 011608 468 E 468 (481)
Q Consensus 468 ~ 468 (481)
+
T Consensus 448 ~ 448 (448)
T PLN02562 448 K 448 (448)
T ss_pred C
Confidence 3
No 15
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2e-66 Score=511.54 Aligned_cols=429 Identities=22% Similarity=0.363 Sum_probs=329.2
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCc
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADA 80 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (481)
|.+.++||+++|+|++||++|++.||+.|+.+ |+.|||++++.+...+.+ ....+....+.+.++|.. +++ +.+.
T Consensus 1 ~~~~~~Hvvl~P~paqGHi~P~l~LAk~La~~-g~~vT~~tt~~~~~~~~~-~~~~~~~~~v~~~~~p~~--~gl-p~g~ 75 (453)
T PLN02764 1 MGGLKFHVLMYPWFATGHMTPFLFLANKLAEK-GHTVTFLLPKKALKQLEH-LNLFPHNIVFRSVTVPHV--DGL-PVGT 75 (453)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHhC-CCEEEEEeCcchhhhhcc-cccCCCCceEEEEECCCc--CCC-CCcc
Confidence 78889999999999999999999999999999 999999999976544322 211110113667777732 233 4332
Q ss_pred c--------HHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccch
Q 011608 81 S--------IVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTID 152 (481)
Q Consensus 81 ~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~ 152 (481)
+ ....+........+.+.++|++. ++||||+|. +.|+..+|+++|||.+.|+++++..++.+.+ +.
T Consensus 76 e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~--~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~-- 149 (453)
T PLN02764 76 ETVSEIPVTSADLLMSAMDLTRDQVEVVVRAV--EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG-- 149 (453)
T ss_pred cccccCChhHHHHHHHHHHHhHHHHHHHHHhC--CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc--
Confidence 1 11223444445667888888887 889999995 8899999999999999999999988877642 21
Q ss_pred hhhhccccCCCCCccCCCCc----ccCccccccccc-CC--CchhHHHHHHHh-hhhcccceEEecChhhhcHHHHHHHH
Q 011608 153 KRLQEEHYGRKQPLMIPGCR----SVRFQDTLEAFT-DP--KDQLFDEYLRIG-LEMVTADGILINTWEDLEPTTLASLR 224 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~pg~~----~~~~~~l~~~~~-~~--~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~~~ 224 (481)
... +.++||++ .++..+++.... .. .......+.... +...+++++++|||.+||+.+++.+.
T Consensus 150 ~~~---------~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~ 220 (453)
T PLN02764 150 GEL---------GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIE 220 (453)
T ss_pred ccC---------CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHH
Confidence 000 01235554 244455544211 11 111122233333 55677889999999999999999887
Q ss_pred hccCCCCCeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCC
Q 011608 225 DGISKLPPIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPM 304 (481)
Q Consensus 225 ~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 304 (481)
... -++++.|||++...... ...+++|.+|||++++++||||||||+...+.+++.+++.+|+.++.+|+|+++.+.
T Consensus 221 ~~~--~~~v~~VGPL~~~~~~~-~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~ 297 (453)
T PLN02764 221 KHC--RKKVLLTGPVFPEPDKT-RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPR 297 (453)
T ss_pred hhc--CCcEEEeccCccCcccc-ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 531 14699999997532111 113568999999999999999999999999999999999999999999999998532
Q ss_pred CCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeeccc
Q 011608 305 DNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPL 384 (481)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~ 384 (481)
. .....+.+|++|.++++++++++.+|+||.+||+|++|++|||||||||++||+++|||||++|+
T Consensus 298 ~--------------~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~ 363 (453)
T PLN02764 298 G--------------SSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQ 363 (453)
T ss_pred C--------------CcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCc
Confidence 1 00012469999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHhhcCCChHHHHHH
Q 011608 385 YAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVD--KEGQALRSRVKELKHSAKKASTKGGSSYNALSQ 462 (481)
Q Consensus 385 ~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~--~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~ 462 (481)
++||+.||+++++.+|+|+.+... +.+.+++++|+++|+++|.+ +.|+.+|++++++++.+ +++|++++++++
T Consensus 364 ~~DQ~~na~~l~~~~g~gv~~~~~-~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~----~~~GSS~~~l~~ 438 (453)
T PLN02764 364 LGDQVLNTRLLSDELKVSVEVARE-ETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETL----ASPGLLTGYVDN 438 (453)
T ss_pred ccchHHHHHHHHHHhceEEEeccc-cCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH----HhcCCHHHHHHH
Confidence 999999999997679999987531 01358999999999999987 44888999999999994 568999999999
Q ss_pred HHHHHHHHH
Q 011608 463 VAKQCEMSL 471 (481)
Q Consensus 463 ~~~~~~~~~ 471 (481)
|++++....
T Consensus 439 lv~~~~~~~ 447 (453)
T PLN02764 439 FIESLQDLV 447 (453)
T ss_pred HHHHHHHhc
Confidence 999987764
No 16
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.7e-66 Score=522.37 Aligned_cols=446 Identities=31% Similarity=0.566 Sum_probs=332.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCC--CeEEEEecCCCchhhh--h-hccCCC--CCCceEEEecCCCCCCCCCC
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQND--FQVTIFVVATDTSTVQ--S-QLRNLP--NPHLFNIVSLPPVDISALLD 77 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~G--h~Vt~~~~~~~~~~~~--~-~~~~~~--~~~~~~~~~i~~~~~~~~~~ 77 (481)
|+|||++|+|++||++|++.||+.|+.+ | ..|||++++.+..... + .+.... ..++++|+.+|....+.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~-G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~--- 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDS-DDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPT--- 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhC-CCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCc---
Confidence 5799999999999999999999999999 8 8899999997654221 1 121111 01369999998644211
Q ss_pred CCccHHHHHHHHHHHhhHHHHHHHhhc-------CCC-CcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcc
Q 011608 78 ADASIVIKIIFMMRESLPALRSSISTL-------KPR-PTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFP 149 (481)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~-~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p 149 (481)
.... .+..+.....+.+.+.++++ ..+ .+|||+|.++.|+..+|+++|||++.|+++++..++.+.++|
T Consensus 78 ~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~ 154 (481)
T PLN02554 78 TEDP---TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQ 154 (481)
T ss_pred ccch---HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhh
Confidence 1111 22223333333444444333 113 389999999999999999999999999999999999988877
Q ss_pred cchhh--hh-ccccCCCCCccCCCCc-ccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHh
Q 011608 150 TIDKR--LQ-EEHYGRKQPLMIPGCR-SVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRD 225 (481)
Q Consensus 150 ~~~~~--~~-~~~~~~~~~~~~pg~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~ 225 (481)
..... .. .+......++.+||+. +++..+++..+..+ ..+..+.+......+++++++||+.++|.....++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~ 232 (481)
T PLN02554 155 MLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK--EWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSG 232 (481)
T ss_pred hhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH--HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 64322 11 0111111234588874 78888887655432 3344555666677889999999999999999998876
Q ss_pred ccCCCCCeeeeCCccc-CCCCC--CCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcC
Q 011608 226 GISKLPPIYPIGPVVR-SMGSS--HMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRP 302 (481)
Q Consensus 226 ~~~~~p~~~~vGpl~~-~~~~~--~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 302 (481)
.-...|+++.|||++. ..... ....+++|.+||+++++++||||||||+...+.+++++++.+|++++++|||+++.
T Consensus 233 ~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~ 312 (481)
T PLN02554 233 SSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRR 312 (481)
T ss_pred cccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcC
Confidence 4112568999999943 22111 01245789999999988899999999999999999999999999999999999975
Q ss_pred CCCCCCCCcccccCCCCCC--CCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCccee
Q 011608 303 PMDNDVSGSFFKVGDGSSD--GTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLI 380 (481)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~--~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v 380 (481)
+.... .. +..++ .....+|++|.++.++.+ ++.+|+||.+||.|++|++|||||||||++||+++|||||
T Consensus 313 ~~~~~-----~~--~~~~~~~~~~~~lp~~~~~r~~~~g-~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l 384 (481)
T PLN02554 313 ASPNI-----MK--EPPGEFTNLEEILPEGFLDRTKDIG-KVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMA 384 (481)
T ss_pred Ccccc-----cc--cccccccchhhhCChHHHHHhccCc-eEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEE
Confidence 32100 00 00000 011236899999987655 5559999999999999999999999999999999999999
Q ss_pred ecccccchhhhHHHHHHhhceeEeccccC-------CCCccCHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHhhc
Q 011608 381 VWPLYAEQKMNATMLAEELGVAVRPNEMP-------TENLVKREEIEMMVRRILV-DKEGQALRSRVKELKHSAKKASTK 452 (481)
Q Consensus 381 ~~P~~~DQ~~na~~v~~~~G~g~~~~~~~-------~~~~~~~~~l~~al~~vl~-~~~~~~~r~~a~~l~~~~~~~~~~ 452 (481)
++|+++||+.||+++++.+|+|+.++... ....+++++|+++|+++|. |+ .||+||+++++.++.++++
T Consensus 385 ~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~---~~r~~a~~l~~~~~~av~~ 461 (481)
T PLN02554 385 AWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS---DVRKRVKEMSEKCHVALMD 461 (481)
T ss_pred ecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHhcC
Confidence 99999999999966458999999985210 1136899999999999996 44 4999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHH
Q 011608 453 GGSSYNALSQVAKQCEMS 470 (481)
Q Consensus 453 ~g~~~~~~~~~~~~~~~~ 470 (481)
||++++++++||+++...
T Consensus 462 gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 462 GGSSHTALKKFIQDVTKN 479 (481)
T ss_pred CChHHHHHHHHHHHHHhh
Confidence 999999999999998754
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=9.7e-66 Score=519.10 Aligned_cols=445 Identities=29% Similarity=0.507 Sum_probs=325.8
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccC----CC-CCCceEEEecCCCCCCCC
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRN----LP-NPHLFNIVSLPPVDISAL 75 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~i~~~~~~~~ 75 (481)
|...++||+++|+|++||++|++.||++|+.| |++|||++++.+...+.+.... .+ ....+.++++|... ..+
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~r-G~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~-~gl 78 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSSR-GAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVE-LGL 78 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHhC-CCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCc-CCC
Confidence 77788999999999999999999999999999 9999999999877655443111 11 00134444444211 011
Q ss_pred CCCCc---------------cHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHH
Q 011608 76 LDADA---------------SIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAW 140 (481)
Q Consensus 76 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~ 140 (481)
+.+. +....+........+.+++++++. ++||||+|.++.|+..+|+++|||.++|++++++
T Consensus 79 -P~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~ 155 (482)
T PLN03007 79 -PEGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT--RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYF 155 (482)
T ss_pred -CCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEECCcchhHHHHHHHhCCCeEEeecccHH
Confidence 2211 111112222334455666666655 8999999999999999999999999999998877
Q ss_pred HHHHHhhcccchhhhhccccCCCCCccCCCCc---ccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcH
Q 011608 141 FLAATIYFPTIDKRLQEEHYGRKQPLMIPGCR---SVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEP 217 (481)
Q Consensus 141 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~pg~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~ 217 (481)
.+............. .......++.+|+++ .+...+++.. .........+........+.+++++||+.++|.
T Consensus 156 ~~~~~~~~~~~~~~~--~~~~~~~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~ 231 (482)
T PLN03007 156 SLCASYCIRVHKPQK--KVASSSEPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELES 231 (482)
T ss_pred HHHHHHHHHhccccc--ccCCCCceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHH
Confidence 665544221100000 000001123356654 2333333321 111222233334444567888999999999999
Q ss_pred HHHHHHHhccCCCCCeeeeCCcccCCC--------C-CCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHH
Q 011608 218 TTLASLRDGISKLPPIYPIGPVVRSMG--------S-SHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWG 288 (481)
Q Consensus 218 ~~~~~~~~~~~~~p~~~~vGpl~~~~~--------~-~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~a 288 (481)
...+.+.+.. .+++++|||+..... . +....+++|.+||+++++++||||||||+...+.+++.+++.+
T Consensus 232 ~~~~~~~~~~--~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~ 309 (482)
T PLN03007 232 AYADFYKSFV--AKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAG 309 (482)
T ss_pred HHHHHHHhcc--CCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHH
Confidence 9888887541 136999999864211 0 1111257799999999889999999999988889999999999
Q ss_pred HHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCch
Q 011608 289 LELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNS 368 (481)
Q Consensus 289 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s 368 (481)
|+.++++|||+++.+... .+ ....+|++|.++..+.|+++.+|+||.+||+|+++++|||||||||
T Consensus 310 l~~~~~~flw~~~~~~~~-------------~~-~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS 375 (482)
T PLN03007 310 LEGSGQNFIWVVRKNENQ-------------GE-KEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNS 375 (482)
T ss_pred HHHCCCCEEEEEecCCcc-------------cc-hhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchH
Confidence 999999999999754210 00 1235899999999888999999999999999999999999999999
Q ss_pred hHHHHHcCcceeecccccchhhhHHHHHHhhceeEecccc----CCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 011608 369 TLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEM----PTENLVKREEIEMMVRRILVDKEGQALRSRVKELKH 444 (481)
Q Consensus 369 ~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~----~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~ 444 (481)
++||+++|||||++|+++||+.||+++++.+++|+.+... .+...+++++|+++|+++|.|++|+.||+||+++++
T Consensus 376 ~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~ 455 (482)
T PLN03007 376 LLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAE 455 (482)
T ss_pred HHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987666777665310 011468999999999999998878889999999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHH
Q 011608 445 SAKKASTKGGSSYNALSQVAKQCEMS 470 (481)
Q Consensus 445 ~~~~~~~~~g~~~~~~~~~~~~~~~~ 470 (481)
.+++++++||++++++++||+++...
T Consensus 456 ~a~~a~~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 456 MAKAAVEEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 99999999999999999999988753
No 18
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1e-65 Score=509.18 Aligned_cols=434 Identities=26% Similarity=0.415 Sum_probs=326.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFAT-QNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVI 84 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~-r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (481)
.||+++|+|++||++|+++||+.|+. + |+.|||++++.+.. ++.+......++++|+.++....++......+...
T Consensus 4 ~hvv~~P~p~qGHi~P~l~La~~La~~~-G~~vT~v~t~~~~~--~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~ 80 (455)
T PLN02152 4 PHFLLVTFPAQGHVNPSLRFARRLIKTT-GTRVTFATCLSVIH--RSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQN 80 (455)
T ss_pred cEEEEecCcccccHHHHHHHHHHHhhCC-CcEEEEEeccchhh--hhhhccCCCCCCEEEEEcCCCCCCccccccccHHH
Confidence 59999999999999999999999995 7 99999999995311 11122111113688999873111110000112333
Q ss_pred HHHHHHHHhhHHHHHHHhhcC---CCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccC
Q 011608 85 KIIFMMRESLPALRSSISTLK---PRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYG 161 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~---~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (481)
.+......+.+.+.++++++. .+++|||+|.+++|+..+|+++|||.+.|++++++.++.+++++...
T Consensus 81 ~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~--------- 151 (455)
T PLN02152 81 RLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN--------- 151 (455)
T ss_pred HHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC---------
Confidence 445555566778888887651 34599999999999999999999999999999999988876654211
Q ss_pred CCCCccCCCCcccCcccccccccCCC--chhHHHHHHHhhhhcc--cceEEecChhhhcHHHHHHHHhccCCCCCeeeeC
Q 011608 162 RKQPLMIPGCRSVRFQDTLEAFTDPK--DQLFDEYLRIGLEMVT--ADGILINTWEDLEPTTLASLRDGISKLPPIYPIG 237 (481)
Q Consensus 162 ~~~~~~~pg~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vG 237 (481)
...+.+||++++...+++.++.... ......+.+..+...+ ++++++|||++||+..++.+... +++.||
T Consensus 152 -~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~-----~v~~VG 225 (455)
T PLN02152 152 -NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNI-----EMVAVG 225 (455)
T ss_pred -CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcC-----CEEEEc
Confidence 1234588888788888887664321 2223334344443332 46999999999999999888532 699999
Q ss_pred CcccCC---CCC--C----CCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCC
Q 011608 238 PVVRSM---GSS--H----MSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDV 308 (481)
Q Consensus 238 pl~~~~---~~~--~----~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 308 (481)
|++... ... . ...+.+|.+|||++++++||||||||+...+.+++++++.+|+.++++|||+++.+....
T Consensus 226 PL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~- 304 (455)
T PLN02152 226 PLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNRE- 304 (455)
T ss_pred ccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccc-
Confidence 997532 110 0 012457999999998889999999999999999999999999999999999997531100
Q ss_pred CCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccch
Q 011608 309 SGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQ 388 (481)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ 388 (481)
... +. .......+|++|.++.++.+ ++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||
T Consensus 305 ---~~~--~~-~~~~~~~~~~~f~e~~~~~g-~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ 377 (455)
T PLN02152 305 ---AKI--EG-EEETEIEKIAGFRHELEEVG-MIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQ 377 (455)
T ss_pred ---ccc--cc-ccccccccchhHHHhccCCe-EEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccc
Confidence 000 00 00001135789998887655 555999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011608 389 KMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQC 467 (481)
Q Consensus 389 ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 467 (481)
+.||+++++.+|+|+.+.. ++++.+++++|+++|+++|+| ++..||+||++|++.+++++.+||++++++++||+++
T Consensus 378 ~~na~~~~~~~~~G~~~~~-~~~~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 378 PANAKLLEEIWKTGVRVRE-NSEGLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred hHHHHHHHHHhCceEEeec-CcCCcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999999766777777642 122346999999999999974 4567999999999999999999999999999999876
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.1e-66 Score=517.76 Aligned_cols=446 Identities=32% Similarity=0.587 Sum_probs=331.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCC---eEEEEecCCCch-hhhhhccCC-CCCCceEEEecCCCCCCCCCC-C
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDF---QVTIFVVATDTS-TVQSQLRNL-PNPHLFNIVSLPPVDISALLD-A 78 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh---~Vt~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~ 78 (481)
+.||+++|+|++||++|++.||+.|+.+ |. .||+++++.... .....+... ...++++|+++|....+.... .
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~-G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINL-DRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhC-CCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 4699999999999999999999999999 83 567777654322 111112111 111369999998643111000 0
Q ss_pred CccHHHHHHHHHHHhhHHHHHHHhhc-----C--C-CCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhccc
Q 011608 79 DASIVIKIIFMMRESLPALRSSISTL-----K--P-RPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPT 150 (481)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~-----~--~-~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~ 150 (481)
.......+..+...+.+.+++.++++ . . +++|||+|.++.|+..+|+++|||.++|++++++.++.+.++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 11111233444455555666666554 1 1 35999999999999999999999999999999998888877764
Q ss_pred chhhhhccc--cCCCCCccCCCC-cccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhcc
Q 011608 151 IDKRLQEEH--YGRKQPLMIPGC-RSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGI 227 (481)
Q Consensus 151 ~~~~~~~~~--~~~~~~~~~pg~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 227 (481)
......... ....+++.+||+ .+++..+++..+.... .+..+.+..+...+++++++|||.+||+.+++++....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~ 239 (475)
T PLN02167 162 RHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE--SYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSRLP 239 (475)
T ss_pred hccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc--hHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHhhc
Confidence 322211010 011133568887 4577777776543321 23444555566788999999999999999999886431
Q ss_pred CCCCCeeeeCCcccCCC--C-CC-CCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCC
Q 011608 228 SKLPPIYPIGPVVRSMG--S-SH-MSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPP 303 (481)
Q Consensus 228 ~~~p~~~~vGpl~~~~~--~-~~-~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 303 (481)
..+|++++|||++.... . .. ...+++|.+||+.+++++||||||||+...+.+++.+++.+|+.++++|||+++.+
T Consensus 240 ~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~ 319 (475)
T PLN02167 240 ENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTN 319 (475)
T ss_pred ccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 12478999999986321 1 10 11236799999999889999999999988899999999999999999999999753
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecc
Q 011608 304 MDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWP 383 (481)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P 383 (481)
... .......+|++|.++++++++++ +|+||.+||+|++|++|||||||||++||+++|||||+||
T Consensus 320 ~~~-------------~~~~~~~lp~~~~er~~~rg~v~-~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P 385 (475)
T PLN02167 320 PAE-------------YASPYEPLPEGFMDRVMGRGLVC-GWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWP 385 (475)
T ss_pred ccc-------------ccchhhhCChHHHHHhccCeeee-ccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecc
Confidence 110 00012358999999998766544 9999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHhhceeEecccc---CCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHH
Q 011608 384 LYAEQKMNATMLAEELGVAVRPNEM---PTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNAL 460 (481)
Q Consensus 384 ~~~DQ~~na~~v~~~~G~g~~~~~~---~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~ 460 (481)
+++||+.||+++++.+|+|+.++.. +....+++++|+++|+++|.+++ .||+|++++++.+++++++||++++++
T Consensus 386 ~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~--~~r~~a~~~~~~~~~av~~gGsS~~~l 463 (475)
T PLN02167 386 MYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGED--VPRKKVKEIAEAARKAVMDGGSSFVAV 463 (475)
T ss_pred ccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999998755899999998631 00134799999999999997652 499999999999999999999999999
Q ss_pred HHHHHHHHH
Q 011608 461 SQVAKQCEM 469 (481)
Q Consensus 461 ~~~~~~~~~ 469 (481)
++||+++..
T Consensus 464 ~~~v~~i~~ 472 (475)
T PLN02167 464 KRFIDDLLG 472 (475)
T ss_pred HHHHHHHHh
Confidence 999998864
No 20
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.6e-65 Score=508.69 Aligned_cols=422 Identities=24% Similarity=0.347 Sum_probs=318.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccH-
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASI- 82 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~- 82 (481)
+++||+++|+|++||++|++.||+.|+++ |++|||++++.+...+.+. .... ++++|..++.+..+++ +.+.+.
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~i~~~-~~~~--~~i~~~~i~lP~~dGL-P~g~e~~ 77 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEK-GHRVTFFLPKKAHKQLQPL-NLFP--DSIVFEPLTLPPVDGL-PFGAETA 77 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCchhhhhccc-ccCC--CceEEEEecCCCcCCC-CCccccc
Confidence 46899999999999999999999999999 9999999999765544322 1111 2577866654333333 443221
Q ss_pred -------HHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhh
Q 011608 83 -------VIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRL 155 (481)
Q Consensus 83 -------~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~ 155 (481)
...+........+.+++++++. +|||||+|. +.|+..+|+++|||++.|+++++..++.+.+ +. ...
T Consensus 78 ~~l~~~~~~~~~~a~~~l~~~l~~~L~~~--~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~--~~~ 151 (446)
T PLN00414 78 SDLPNSTKKPIFDAMDLLRDQIEAKVRAL--KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PR--AEL 151 (446)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cH--hhc
Confidence 1122333445566777777766 899999995 8999999999999999999999988887665 21 100
Q ss_pred hccccCCCCCccCCCCcc----cCcccc--cccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCC
Q 011608 156 QEEHYGRKQPLMIPGCRS----VRFQDT--LEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISK 229 (481)
Q Consensus 156 ~~~~~~~~~~~~~pg~~~----~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~ 229 (481)
. ..+|+++. ++..+. +.++ .. ....+.+..+...+++++++|||.+||+...+.+.+..
T Consensus 152 -------~--~~~pg~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~-- 216 (446)
T PLN00414 152 -------G--FPPPDYPLSKVALRGHDANVCSLF-AN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQC-- 216 (446)
T ss_pred -------C--CCCCCCCCCcCcCchhhcccchhh-cc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhc--
Confidence 0 11344332 222221 1111 11 12233344456677899999999999999999887641
Q ss_pred CCCeeeeCCcccCCCCC-CCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCC
Q 011608 230 LPPIYPIGPVVRSMGSS-HMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDV 308 (481)
Q Consensus 230 ~p~~~~vGpl~~~~~~~-~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 308 (481)
.++++.|||++...... ....+++|.+|||++++++||||||||+...+.+++.+++.+|+.++.+|+|+++.+...
T Consensus 217 ~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~-- 294 (446)
T PLN00414 217 QRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGS-- 294 (446)
T ss_pred CCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCc--
Confidence 13699999997532111 111245799999999999999999999999999999999999999999999999764210
Q ss_pred CCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccch
Q 011608 309 SGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQ 388 (481)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ 388 (481)
++ ..+.+|++|.++++++++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||
T Consensus 295 -----------~~-~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ 362 (446)
T PLN00414 295 -----------ST-VQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQ 362 (446)
T ss_pred -----------cc-chhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccch
Confidence 00 124689999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 011608 389 KMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK--EGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQ 466 (481)
Q Consensus 389 ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~--~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 466 (481)
+.||+++++.+|+|+++..- +++.+++++|+++++++|.++ .|+.||++++++++.+ ++.||++ ..+++||++
T Consensus 363 ~~na~~~~~~~g~g~~~~~~-~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~---~~~gg~s-s~l~~~v~~ 437 (446)
T PLN00414 363 VLITRLLTEELEVSVKVQRE-DSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETL---VSPGLLS-GYADKFVEA 437 (446)
T ss_pred HHHHHHHHHHhCeEEEeccc-cCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH---HcCCCcH-HHHHHHHHH
Confidence 99999997689999998631 112589999999999999763 4788999999999995 3345523 448999998
Q ss_pred HHHH
Q 011608 467 CEMS 470 (481)
Q Consensus 467 ~~~~ 470 (481)
++..
T Consensus 438 ~~~~ 441 (446)
T PLN00414 438 LENE 441 (446)
T ss_pred HHHh
Confidence 8554
No 21
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.8e-65 Score=513.22 Aligned_cols=436 Identities=30% Similarity=0.465 Sum_probs=335.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCcc
Q 011608 3 TTKTHIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADAS 81 (481)
Q Consensus 3 ~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 81 (481)
+.++||+++|+|++||++|++.||++|+.++ ||+|||++++.+.+.+.+.. . .++++|+++|....++. ....+
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-~---~~gi~fv~lp~~~p~~~-~~~~~ 82 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-K---PDNIRFATIPNVIPSEL-VRAAD 82 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-C---CCCEEEEECCCCCCCcc-ccccC
Confidence 4569999999999999999999999999763 79999999998776644421 1 14799999985221221 11223
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhh--hhccc
Q 011608 82 IVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKR--LQEEH 159 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~--~~~~~ 159 (481)
....+..+.+.+.+.+.++++++..++||||+|.++.|+..+|+++|||++.|+++++..++.+.+++.+... .+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~ 162 (459)
T PLN02448 83 FPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVEL 162 (459)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCcc
Confidence 3333344444566778888877544689999999999999999999999999999999888877666543221 01110
Q ss_pred cC-CCCCc-cCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeeeC
Q 011608 160 YG-RKQPL-MIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPIG 237 (481)
Q Consensus 160 ~~-~~~~~-~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vG 237 (481)
.. ..... .+|++++++..+++.++.......+..+........+++++++|||++||+..++.+...+ .++++.||
T Consensus 163 ~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~--~~~~~~iG 240 (459)
T PLN02448 163 SESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKF--PFPVYPIG 240 (459)
T ss_pred ccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhc--CCceEEec
Confidence 00 01111 3778777788888766544333335555566666677889999999999999999887652 13699999
Q ss_pred CcccCCC---CC-C--C-CCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCC
Q 011608 238 PVVRSMG---SS-H--M-SENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSG 310 (481)
Q Consensus 238 pl~~~~~---~~-~--~-~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 310 (481)
|+..... .. . . ..+.++.+||+.++++++|||||||+...+.+++++++.+|+.++++|||+++..
T Consensus 241 P~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~------- 313 (459)
T PLN02448 241 PSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE------- 313 (459)
T ss_pred CcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc-------
Confidence 9975311 00 0 0 1224799999999889999999999988889999999999999999999987432
Q ss_pred cccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhh
Q 011608 311 SFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKM 390 (481)
Q Consensus 311 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~ 390 (481)
..++.++.++ +.++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 314 -----------------~~~~~~~~~~-~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~ 375 (459)
T PLN02448 314 -----------------ASRLKEICGD-MGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPL 375 (459)
T ss_pred -----------------hhhHhHhccC-CEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchh
Confidence 1234444433 5666799999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhceeEecccc-CCCCccCHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011608 391 NATMLAEELGVAVRPNEM-PTENLVKREEIEMMVRRILVD--KEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQC 467 (481)
Q Consensus 391 na~~v~~~~G~g~~~~~~-~~~~~~~~~~l~~al~~vl~~--~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 467 (481)
||+++++.+|+|+.+... ++...+++++|+++|+++|.+ ++|+.||+||++|++.++.++++||++++++++||+++
T Consensus 376 na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~ 455 (459)
T PLN02448 376 NSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDI 455 (459)
T ss_pred hHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999997568999888531 111357999999999999986 35788999999999999999999999999999999998
Q ss_pred HHH
Q 011608 468 EMS 470 (481)
Q Consensus 468 ~~~ 470 (481)
.+.
T Consensus 456 ~~~ 458 (459)
T PLN02448 456 SQG 458 (459)
T ss_pred hcc
Confidence 753
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.6e-46 Score=379.84 Aligned_cols=408 Identities=15% Similarity=0.180 Sum_probs=252.7
Q ss_pred cEEEEE-cCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCC--CCC------CC
Q 011608 6 THIALL-ASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVD--ISA------LL 76 (481)
Q Consensus 6 ~~vvl~-~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~------~~ 76 (481)
.+|+.+ |.++.||+.-+.+++++|++| ||+||++++...... ... ...+++.+.++... ..+ .+
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~r-GH~VTvi~p~~~~~~-----~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAER-GHNVTVIKPTLRVYY-----ASH-LCGNITEIDASLSVEYFKKLVKSSAVF 93 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHc-CCeEEEEeccccccc-----ccC-CCCCEEEEEcCCChHHHHHHHhhhhHH
Confidence 457655 889999999999999999999 999999988642110 000 01245555543110 000 00
Q ss_pred CC-C--cc---H----HHHHHHHHHHh--hHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHh-CCceEEEechhHHHH-
Q 011608 77 DA-D--AS---I----VIKIIFMMRES--LPALRSSISTLKPRPTALFADLFGTEAFQIADEF-EMLKYVYIASNAWFL- 142 (481)
Q Consensus 77 ~~-~--~~---~----~~~~~~~~~~~--~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~-giP~v~~~~~~~~~~- 142 (481)
.. . .+ . ...+...++.. .+.+.++|++-+.++|+||+|.+..++..+|+.+ ++|.|.+++......
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~ 173 (507)
T PHA03392 94 RKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAEN 173 (507)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhH
Confidence 00 0 00 0 00111122211 2455666652123899999999888888899999 999888766433211
Q ss_pred HHHhh-cccchhhhhccccCCCCCccCCCCcccCcccccccccCCC-chhHHHHHHHhhh-hcccceEEecChhhhcHHH
Q 011608 143 AATIY-FPTIDKRLQEEHYGRKQPLMIPGCRSVRFQDTLEAFTDPK-DQLFDEYLRIGLE-MVTADGILINTWEDLEPTT 219 (481)
Q Consensus 143 ~~~~~-~p~~~~~~~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~l~~s~~~l~~~~ 219 (481)
..... .|...+..|.......+.+.+.+. +...+.... ...+..+...... .++..+.-.+++.++....
T Consensus 174 ~~~~gg~p~~~syvP~~~~~~~~~Msf~~R-------~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~ 246 (507)
T PHA03392 174 FETMGAVSRHPVYYPNLWRSKFGNLNVWET-------INEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRV 246 (507)
T ss_pred HHhhccCCCCCeeeCCcccCCCCCCCHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCC
Confidence 11111 222222222111111111111110 000000000 0000000000000 0111110012333333332
Q ss_pred HHHHHhc-----cC-C-CCCeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCC---CChHHHHHHHHHH
Q 011608 220 LASLRDG-----IS-K-LPPIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGT---LSANQMIEVAWGL 289 (481)
Q Consensus 220 ~~~~~~~-----~~-~-~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~---~~~~~~~~~~~al 289 (481)
..++.++ ++ + .|++++|||++.++.. ..++++++.+|+++.+ +++|||||||+.. .+.+.++.+++|+
T Consensus 247 ~l~lvns~~~~d~~rp~~p~v~~vGgi~~~~~~-~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~~~l~a~ 324 (507)
T PHA03392 247 QLLFVNVHPVFDNNRPVPPSVQYLGGLHLHKKP-PQPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQMLLRTF 324 (507)
T ss_pred cEEEEecCccccCCCCCCCCeeeecccccCCCC-CCCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHHHHHHHH
Confidence 2222222 11 1 4459999999874311 1137899999999864 5799999999853 4677899999999
Q ss_pred HhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchh
Q 011608 290 ELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNST 369 (481)
Q Consensus 290 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~ 369 (481)
++.+.+|||+++.... ...+|+ |+.+.+|+||.+||+|++|++||||||+||+
T Consensus 325 ~~l~~~viw~~~~~~~------------------~~~~p~---------Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~ 377 (507)
T PHA03392 325 KKLPYNVLWKYDGEVE------------------AINLPA---------NVLTQKWFPQRAVLKHKNVKAFVTQGGVQST 377 (507)
T ss_pred HhCCCeEEEEECCCcC------------------cccCCC---------ceEEecCCCHHHHhcCCCCCEEEecCCcccH
Confidence 9999999999854311 013444 8999999999999999999999999999999
Q ss_pred HHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Q 011608 370 LESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKA 449 (481)
Q Consensus 370 ~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~ 449 (481)
+||+++|||||++|+++||+.||+|+ +++|+|+.++. .++++++|.++|+++|+|++ ||+||+++++.++..
T Consensus 378 ~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~----~~~t~~~l~~ai~~vl~~~~---y~~~a~~ls~~~~~~ 449 (507)
T PHA03392 378 DEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDT----VTVSAAQLVLAIVDVIENPK---YRKNLKELRHLIRHQ 449 (507)
T ss_pred HHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEecc----CCcCHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhC
Confidence 99999999999999999999999999 69999999985 78999999999999999988 999999999996542
Q ss_pred hhcCCChHHHHHHHHHHH
Q 011608 450 STKGGSSYNALSQVAKQC 467 (481)
Q Consensus 450 ~~~~g~~~~~~~~~~~~~ 467 (481)
.-+....+..-++..
T Consensus 450 ---p~~~~~~av~~iE~v 464 (507)
T PHA03392 450 ---PMTPLHKAIWYTEHV 464 (507)
T ss_pred ---CCCHHHHHHHHHHHH
Confidence 323444444444443
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=3.1e-49 Score=406.51 Aligned_cols=375 Identities=23% Similarity=0.351 Sum_probs=215.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhcc-CCCCCCceEEEecCCCCCCCCCCCC-ccHHH
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLR-NLPNPHLFNIVSLPPVDISALLDAD-ASIVI 84 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~ 84 (481)
+|+++|. +.||+.++..|+++|++| ||+||++++..... +. ... .++++..++........... .+...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~r-GH~VTvl~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAER-GHNVTVLTPSPSSS-----LNPSKP--SNIRFETYPDPYPEEEFEEIFPEFIS 72 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH--TTSEEEHHHHHHT-------------S-CCEEEE-----TT------TTHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhc-CCceEEEEeecccc-----cccccc--cceeeEEEcCCcchHHHhhhhHHHHH
Confidence 5788884 789999999999999999 99999999863111 11 111 24555555432211110111 11000
Q ss_pred ----------HHHHHH-------HHhh---------HHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechh
Q 011608 85 ----------KIIFMM-------RESL---------PALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASN 138 (481)
Q Consensus 85 ----------~~~~~~-------~~~~---------~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~ 138 (481)
.+.... .... ..+.+.+++. ++|++|+|.+..++..+|+.+++|.+.+.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~--~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~ 150 (500)
T PF00201_consen 73 KFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE--KFDLVISDAFDPCGLALAHYLGIPVIIISSST 150 (500)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH--HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCC
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--ccccceEeeccchhHHHHHHhcCCeEEEeccc
Confidence 011100 0000 1112223333 79999999988888889999999987643321
Q ss_pred HHHHHHHhhcccchhhhhccccCCCCCccCCCCcccCccccccc--ccCCCchh-HHHHHHHh-hhhcc-cceE--Ee--
Q 011608 139 AWFLAATIYFPTIDKRLQEEHYGRKQPLMIPGCRSVRFQDTLEA--FTDPKDQL-FDEYLRIG-LEMVT-ADGI--LI-- 209 (481)
Q Consensus 139 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~pg~~~~~~~~l~~~--~~~~~~~~-~~~~~~~~-~~~~~-~~~~--l~-- 209 (481)
. .+...... .+. ...|++.|.....+.+. +.+|.... .....+.. ..... .+.+ -.
T Consensus 151 ~--------~~~~~~~~----~g~---p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (500)
T PF00201_consen 151 P--------MYDLSSFS----GGV---PSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFG 215 (500)
T ss_dssp S--------CSCCTCCT----SCC---CTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS
T ss_pred c--------cchhhhhc----cCC---CCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcc
Confidence 1 11100000 000 11223333333333322 23333221 11111111 11110 1111 01
Q ss_pred --cChhhhcHHHHHHHHhc-----cCC--CCCeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChH
Q 011608 210 --NTWEDLEPTTLASLRDG-----ISK--LPPIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSAN 280 (481)
Q Consensus 210 --~s~~~l~~~~~~~~~~~-----~~~--~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~ 280 (481)
.+..++......++.+. +|. .|++++||+++..+..+ +++++..|++...++++|||||||+....++
T Consensus 216 ~~~~~~~~~~~~~l~l~ns~~~ld~prp~~p~v~~vGgl~~~~~~~---l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~ 292 (500)
T PF00201_consen 216 FPFSFRELLSNASLVLINSHPSLDFPRPLLPNVVEVGGLHIKPAKP---LPEELWNFLDSSGKKGVVYVSFGSIVSSMPE 292 (500)
T ss_dssp -GGGCHHHHHHHHHCCSSTEEE----HHHHCTSTTGCGC-S----T---CHHHHHHHTSTTTTTEEEEEE-TSSSTT-HH
T ss_pred cccccHHHHHHHHHHhhhccccCcCCcchhhcccccCccccccccc---cccccchhhhccCCCCEEEEecCcccchhHH
Confidence 11222222223333322 111 45699999998765544 7899999999855678999999998654444
Q ss_pred H-HHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCc
Q 011608 281 Q-MIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGG 359 (481)
Q Consensus 281 ~-~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~ 359 (481)
. .+++++++++++++|||+++... ...+|+ |+.+.+|+||.+||.|+++++
T Consensus 293 ~~~~~~~~~~~~~~~~~iW~~~~~~-------------------~~~l~~---------n~~~~~W~PQ~~lL~hp~v~~ 344 (500)
T PF00201_consen 293 EKLKEIAEAFENLPQRFIWKYEGEP-------------------PENLPK---------NVLIVKWLPQNDLLAHPRVKL 344 (500)
T ss_dssp HHHHHHHHHHHCSTTEEEEEETCSH-------------------GCHHHT---------TEEEESS--HHHHHTSTTEEE
T ss_pred HHHHHHHHHHhhCCCcccccccccc-------------------cccccc---------eEEEeccccchhhhhccccee
Confidence 4 88999999999999999995421 122333 888999999999999999999
Q ss_pred eeeecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHH
Q 011608 360 FLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRV 439 (481)
Q Consensus 360 ~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a 439 (481)
||||||+||++||+++|||||++|+++||+.||+++ ++.|+|+.++. .++++++|.++|+++|+|++ ||+||
T Consensus 345 fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~----~~~~~~~l~~ai~~vl~~~~---y~~~a 416 (500)
T PF00201_consen 345 FITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDK----NDLTEEELRAAIREVLENPS---YKENA 416 (500)
T ss_dssp EEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGG----GC-SHHHHHHHHHHHHHSHH---HHHHH
T ss_pred eeeccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEe----cCCcHHHHHHHHHHHHhhhH---HHHHH
Confidence 999999999999999999999999999999999998 79999999986 78999999999999999998 99999
Q ss_pred HHHHHHH
Q 011608 440 KELKHSA 446 (481)
Q Consensus 440 ~~l~~~~ 446 (481)
+++++.+
T Consensus 417 ~~ls~~~ 423 (500)
T PF00201_consen 417 KRLSSLF 423 (500)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9999883
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=5.6e-42 Score=341.78 Aligned_cols=360 Identities=20% Similarity=0.236 Sum_probs=233.8
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCC-CCCCC--CccHHHHHH
Q 011608 11 LASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDIS-ALLDA--DASIVIKII 87 (481)
Q Consensus 11 ~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~--~~~~~~~~~ 87 (481)
+.+|+.||++|++.||++|+++ ||+|+|++++.+.+.+++. ++.|++++..... +.... ..+....+.
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~-Gh~V~~~~~~~~~~~v~~~--------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVAR-GHRVTYATTEEFAERVEAA--------GAEFVLYGSALPPPDNPPENTEEEPIDIIE 71 (392)
T ss_pred CCCCccccccccHHHHHHHHhC-CCeEEEEeCHHHHHHHHHc--------CCEEEecCCcCccccccccccCcchHHHHH
Confidence 3689999999999999999999 9999999999888776653 6777777642211 11000 012222222
Q ss_pred HHHHH---hhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccCCCC
Q 011608 88 FMMRE---SLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGRKQ 164 (481)
Q Consensus 88 ~~~~~---~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 164 (481)
.+... ..+.+.+.++++ +||+||+|.+++++..+|+.+|||+|.+++.+... ..+|.......
T Consensus 72 ~~~~~~~~~~~~l~~~~~~~--~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~~~~~-------- 137 (392)
T TIGR01426 72 KLLDEAEDVLPQLEEAYKGD--RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMVSPAG-------- 137 (392)
T ss_pred HHHHHHHHHHHHHHHHhcCC--CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----ccccccccccc--------
Confidence 22222 233344445555 99999999998899999999999999886543111 00111000000
Q ss_pred CccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhc--------HHHHHHHHhccCCCCC-eee
Q 011608 165 PLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLE--------PTTLASLRDGISKLPP-IYP 235 (481)
Q Consensus 165 ~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~--------~~~~~~~~~~~~~~p~-~~~ 235 (481)
+.... .... ..+. ...+.+.....++..|+-..+...+. ......+......+|+ +++
T Consensus 138 ----~~~~~--~~~~----~~~~---~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 204 (392)
T TIGR01426 138 ----EGSAE--EGAI----AERG---LAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTF 204 (392)
T ss_pred ----hhhhh--hhcc----ccch---hHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEE
Confidence 00000 0000 0000 01111111111111111000101000 0001111111112454 899
Q ss_pred eCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCccccc
Q 011608 236 IGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKV 315 (481)
Q Consensus 236 vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~ 315 (481)
+||+...+.. ...|....+++++|||||||+.....+.++.++++++..+.+++|..+.....
T Consensus 205 ~Gp~~~~~~~--------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~--------- 267 (392)
T TIGR01426 205 VGPCIGDRKE--------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP--------- 267 (392)
T ss_pred ECCCCCCccc--------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh---------
Confidence 9998764221 12366665677899999999866666788899999999999999987543110
Q ss_pred CCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHHHH
Q 011608 316 GDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATML 395 (481)
Q Consensus 316 ~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v 395 (481)
. ....+| .|+.+.+|+||.++|++++ ++|||||+||++||+++|+|+|++|...||+.||+++
T Consensus 268 -----~-~~~~~~---------~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l 330 (392)
T TIGR01426 268 -----A-DLGELP---------PNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRI 330 (392)
T ss_pred -----h-HhccCC---------CCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHH
Confidence 0 001122 3788889999999999987 9999999999999999999999999999999999999
Q ss_pred HHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 011608 396 AEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKK 448 (481)
Q Consensus 396 ~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~ 448 (481)
+++|+|+.++. ..+++++|.++|+++|.|++ |+++++++++.++.
T Consensus 331 -~~~g~g~~l~~----~~~~~~~l~~ai~~~l~~~~---~~~~~~~l~~~~~~ 375 (392)
T TIGR01426 331 -AELGLGRHLPP----EEVTAEKLREAVLAVLSDPR---YAERLRKMRAEIRE 375 (392)
T ss_pred -HHCCCEEEecc----ccCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHH
Confidence 69999999874 67899999999999999887 99999999999654
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.8e-42 Score=345.58 Aligned_cols=364 Identities=16% Similarity=0.118 Sum_probs=232.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCC--------
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLD-------- 77 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------- 77 (481)
|||+|+++|+.||++|++.||++|++| ||+|+|++++.+...+++ .|++|++++.........
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~r-Gh~V~~~t~~~~~~~v~~--------~G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA-GHEVRVATPPEFADLVEA--------AGLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHC-CCeEEEeeCHhHHHHHHH--------cCCceeeCCCCHHHHHhhhhhccccc
Confidence 799999999999999999999999999 999999999977766554 367788776521110000
Q ss_pred --CCccHHHHH---HHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccch
Q 011608 78 --ADASIVIKI---IFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTID 152 (481)
Q Consensus 78 --~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~ 152 (481)
......... ........+.+.+.++++ +||+||+|.+.+++..+|+++|||++.+++++....+.. .|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~--~~--- 144 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARDW--GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF--PP--- 144 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC--CC---
Confidence 001111111 222222333334444445 999999999888889999999999999887553111000 00
Q ss_pred hhhhccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecCh-h----hhcHHHHHHHHhcc
Q 011608 153 KRLQEEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTW-E----DLEPTTLASLRDGI 227 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~-~----~l~~~~~~~~~~~~ 227 (481)
+. +..... ...... ...............++..|+-.... . ........++....
T Consensus 145 --------------~~-~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (401)
T cd03784 145 --------------PL-GRANLR---LYALLE--AELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPP 204 (401)
T ss_pred --------------cc-chHHHH---HHHHHH--HHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCC
Confidence 00 000000 000000 00000001111111111122110000 0 00000011111111
Q ss_pred CCCCC-eeeeC-CcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCCh-HHHHHHHHHHHhCCCcEEEEEcCCC
Q 011608 228 SKLPP-IYPIG-PVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSA-NQMIEVAWGLELSQQRFIWVVRPPM 304 (481)
Q Consensus 228 ~~~p~-~~~vG-pl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~ 304 (481)
+++|. ..++| ++...+... ..+.++..|++.. +++|||||||+..... .....++++++..+.++||+++...
T Consensus 205 ~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~ 280 (401)
T cd03784 205 PDWPRFDLVTGYGFRDVPYNG--PPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGG 280 (401)
T ss_pred CCccccCcEeCCCCCCCCCCC--CCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCcc
Confidence 22444 56665 443322211 2567788888763 5599999999876544 4578899999999999999986542
Q ss_pred CCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeeccc
Q 011608 305 DNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPL 384 (481)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~ 384 (481)
. ....+|+ |+.+.+|+||.++|++++ +||||||+||++||+++|||+|++|+
T Consensus 281 ~-----------------~~~~~~~---------~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~~GvP~v~~P~ 332 (401)
T cd03784 281 L-----------------GAEDLPD---------NVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALRAGVPQLVVPF 332 (401)
T ss_pred c-----------------cccCCCC---------ceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHHcCCCEEeeCC
Confidence 1 0012233 899999999999999977 99999999999999999999999999
Q ss_pred ccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 011608 385 YAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSA 446 (481)
Q Consensus 385 ~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~ 446 (481)
..||+.||+++ +++|+|+.++. ..+++++|.++|+++|.++ ++++++++++++
T Consensus 333 ~~dQ~~~a~~~-~~~G~g~~l~~----~~~~~~~l~~al~~~l~~~----~~~~~~~~~~~~ 385 (401)
T cd03784 333 FGDQPFWAARV-AELGAGPALDP----RELTAERLAAALRRLLDPP----SRRRAAALLRRI 385 (401)
T ss_pred CCCcHHHHHHH-HHCCCCCCCCc----ccCCHHHHHHHHHHHhCHH----HHHHHHHHHHHH
Confidence 99999999999 79999999874 5689999999999999754 667777777774
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.8e-42 Score=355.02 Aligned_cols=404 Identities=27% Similarity=0.408 Sum_probs=244.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEe---cCCCCCCCCCCCCcc
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVS---LPPVDISALLDADAS 81 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~~~ 81 (481)
+.|++++++|++||++|+..+|++|+++ ||+||++++.......... ... ..+.... .+.....+.++...+
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~-gh~vt~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAER-GHNVTVVTPSFNALKLSKS--SKS--KSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHc-CCceEEEEeechhcccCCc--ccc--eeeeeeecChHHhhhhhhhhccchH
Confidence 4789999999999999999999999999 9999999999554331110 000 0011111 111010111122111
Q ss_pred -----HHHHHHHHHHHhhHHHHHHHhhc----CCCCcEEEEcCCCchHHHHHHHhC-CceEEEechhHHHHHHHhhcccc
Q 011608 82 -----IVIKIIFMMRESLPALRSSISTL----KPRPTALFADLFGTEAFQIADEFE-MLKYVYIASNAWFLAATIYFPTI 151 (481)
Q Consensus 82 -----~~~~~~~~~~~~~~~~~~~l~~~----~~~~D~VI~D~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~~~p~~ 151 (481)
.......+...+...+.+.+... ..++|++|+|.+..+...+|.... ++..++.+.++.......+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~ 159 (496)
T KOG1192|consen 80 DDDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc
Confidence 11112223333333444433222 224999999998777777776665 88888877776655443222211
Q ss_pred hhhhhccccCCC-CCccCCCCcc-cCcccccccccCCCc-hhHHHHH-HHhhhh----cccceEEecC-hhhhcHHHHHH
Q 011608 152 DKRLQEEHYGRK-QPLMIPGCRS-VRFQDTLEAFTDPKD-QLFDEYL-RIGLEM----VTADGILINT-WEDLEPTTLAS 222 (481)
Q Consensus 152 ~~~~~~~~~~~~-~~~~~pg~~~-~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~----~~~~~~l~~s-~~~l~~~~~~~ 222 (481)
..+....... ..+.+++... +....++........ ....... ...... ....+++.++ +..++......
T Consensus 160 --~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~ 237 (496)
T KOG1192|consen 160 --YVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLD 237 (496)
T ss_pred --ccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccC
Confidence 1110000000 1111111110 111111111100000 0000000 000010 1222444554 66666554432
Q ss_pred HHhccCCCCCeeeeCCcccCCCCCCCCCchhhhhhhccCCCC--cEEEEEeCCCC---CCChHHHHHHHHHHHhC-CCcE
Q 011608 223 LRDGISKLPPIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTE--SVIYVSFGGGG---TLSANQMIEVAWGLELS-QQRF 296 (481)
Q Consensus 223 ~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~--~vv~vs~GS~~---~~~~~~~~~~~~al~~~-~~~~ 296 (481)
+.+. +..|++++|||+....... ....+.+|++..+.. +||||||||+. ..++++..+++.+++++ +++|
T Consensus 238 ~~~~-~~~~~v~~IG~l~~~~~~~---~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~F 313 (496)
T KOG1192|consen 238 FEPR-PLLPKVIPIGPLHVKDSKQ---KSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTF 313 (496)
T ss_pred CCCC-CCCCCceEECcEEecCccc---cccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceE
Confidence 2211 2245699999999863221 112466677766554 89999999997 79999999999999999 8889
Q ss_pred EEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhh-hccccCCceeeecCCchhHHHHHc
Q 011608 297 IWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEI-LGHASVGGFLSHCGWNSTLESIVN 375 (481)
Q Consensus 297 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~l-L~~~~~~~~I~HgG~~s~~eal~~ 375 (481)
+|+++.... ..+++++.++ ...|++..+|+||.++ |.|+++++||||||||||+|++++
T Consensus 314 iW~~~~~~~-------------------~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~ 373 (496)
T KOG1192|consen 314 LWKYRPDDS-------------------IYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYS 373 (496)
T ss_pred EEEecCCcc-------------------hhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhc
Confidence 999975421 1122333332 2236777799999998 599999999999999999999999
Q ss_pred CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 011608 376 GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAK 447 (481)
Q Consensus 376 GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~ 447 (481)
|||||++|+++||+.||++++ +.|.|..+.. .+++.+.+.+++.+++.+++ |+++++++++..+
T Consensus 374 GvP~v~~Plf~DQ~~Na~~i~-~~g~~~v~~~----~~~~~~~~~~~~~~il~~~~---y~~~~~~l~~~~~ 437 (496)
T KOG1192|consen 374 GVPMVCVPLFGDQPLNARLLV-RHGGGGVLDK----RDLVSEELLEAIKEILENEE---YKEAAKRLSEILR 437 (496)
T ss_pred CCceecCCccccchhHHHHHH-hCCCEEEEeh----hhcCcHHHHHHHHHHHcChH---HHHHHHHHHHHHH
Confidence 999999999999999999995 5555544442 55666559999999999998 9999999999853
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-39 Score=320.31 Aligned_cols=383 Identities=20% Similarity=0.228 Sum_probs=244.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCC-ccHH
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDAD-ASIV 83 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~ 83 (481)
+|||+++..|+.||++|.++||++|.++ ||+|+|++++.+.+.+++. ++.|..++........... .+..
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~-gheV~~~~~~~~~~~ve~a--------g~~f~~~~~~~~~~~~~~~~~~~~ 71 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRR-GHEVVFASTGKFKEFVEAA--------GLAFVAYPIRDSELATEDGKFAGV 71 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhc-CCeEEEEeCHHHHHHHHHh--------CcceeeccccCChhhhhhhhhhcc
Confidence 5899999999999999999999999999 9999999999988887764 5556666543211110111 1111
Q ss_pred HHH---HHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHh-hcccchhhhhccc
Q 011608 84 IKI---IFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATI-YFPTIDKRLQEEH 159 (481)
Q Consensus 84 ~~~---~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~-~~p~~~~~~~~~~ 159 (481)
..+ ..........+.+.+.+. .+|+++.|...+.. .+++..++|++.......+...... +.|...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 141 (406)
T COG1819 72 KSFRRLLQQFKKLIRELLELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVG------- 141 (406)
T ss_pred chhHHHhhhhhhhhHHHHHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccccc-------
Confidence 111 111222334555566666 99999988766555 7899999998875544321111110 000000
Q ss_pred cCCCCCccCCCCcccCcccccccccC-CCchhHHHHHHHhhhhcccce--EEecChhh----hcHHHHHHHHhcc-C--C
Q 011608 160 YGRKQPLMIPGCRSVRFQDTLEAFTD-PKDQLFDEYLRIGLEMVTADG--ILINTWED----LEPTTLASLRDGI-S--K 229 (481)
Q Consensus 160 ~~~~~~~~~pg~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~l~~s~~~----l~~~~~~~~~~~~-~--~ 229 (481)
.-+..+.+...++..... ....... ......++..+ ...+.... -......+....+ + +
T Consensus 142 --------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (406)
T COG1819 142 --------IAGKLPIPLYPLPPRLVRPLIFARSW---LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDR 210 (406)
T ss_pred --------ccccccccccccChhhccccccchhh---hhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCC
Confidence 000001111111111000 0000000 00000000010 00010000 0000011111110 0 1
Q ss_pred CCC-eeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCC
Q 011608 230 LPP-IYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDV 308 (481)
Q Consensus 230 ~p~-~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 308 (481)
.|. ..++||+...+. .+...|.. .++++||+||||+... .+.++.+.++++.++.++|...+. .+.
T Consensus 211 ~p~~~~~~~~~~~~~~-------~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~~-- 277 (406)
T COG1819 211 LPFIGPYIGPLLGEAA-------NELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-ARD-- 277 (406)
T ss_pred CCCCcCcccccccccc-------ccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-ccc--
Confidence 233 556677665432 22333433 3466999999999766 788999999999999999999855 220
Q ss_pred CCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccch
Q 011608 309 SGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQ 388 (481)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ 388 (481)
....+|. |+++.+|+||.++|++++ +||||||+|||+|||++|||+|++|...||
T Consensus 278 --------------~~~~~p~---------n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ 332 (406)
T COG1819 278 --------------TLVNVPD---------NVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVVIPDGADQ 332 (406)
T ss_pred --------------ccccCCC---------ceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEEecCCcch
Confidence 1345666 899999999999999988 999999999999999999999999999999
Q ss_pred hhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 011608 389 KMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCE 468 (481)
Q Consensus 389 ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (481)
+.||.++ |++|+|..++. +.++++.|+++|+++|+|+. ||++++++++.++.. ++ ...++++++++.
T Consensus 333 ~~nA~rv-e~~G~G~~l~~----~~l~~~~l~~av~~vL~~~~---~~~~~~~~~~~~~~~----~g-~~~~a~~le~~~ 399 (406)
T COG1819 333 PLNAERV-EELGAGIALPF----EELTEERLRAAVNEVLADDS---YRRAAERLAEEFKEE----DG-PAKAADLLEEFA 399 (406)
T ss_pred hHHHHHH-HHcCCceecCc----ccCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHhhhc----cc-HHHHHHHHHHHH
Confidence 9999999 79999999985 78999999999999999998 999999999996654 33 566666666643
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=2.6e-25 Score=216.71 Aligned_cols=322 Identities=17% Similarity=0.177 Sum_probs=200.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHH
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKI 86 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (481)
+|++..-++.||++|.+++|++|.++ ||+|.|++++... +..+ .+ ..++.+..++....... .........
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~-g~~v~~vg~~~~~---e~~l--~~-~~g~~~~~~~~~~l~~~--~~~~~~~~~ 73 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKED-NWDISYIGSHQGI---EKTI--IE-KENIPYYSISSGKLRRY--FDLKNIKDP 73 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhC-CCEEEEEECCCcc---cccc--Cc-ccCCcEEEEeccCcCCC--chHHHHHHH
Confidence 68999999999999999999999999 9999999987432 2221 11 12567777764322211 011111122
Q ss_pred HHHHHHhhHHHHHHHhhcCCCCcEEEEcCCC--chHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccCCCC
Q 011608 87 IFMMRESLPALRSSISTLKPRPTALFADLFG--TEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGRKQ 164 (481)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 164 (481)
..+.. ..-....++++. +||+|++.-.. ..+..+|+.+++|+++.....
T Consensus 74 ~~~~~-~~~~~~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~-------------------------- 124 (352)
T PRK12446 74 FLVMK-GVMDAYVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM-------------------------- 124 (352)
T ss_pred HHHHH-HHHHHHHHHHhc--CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC--------------------------
Confidence 22222 223344567888 99999976433 335789999999998865432
Q ss_pred CccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeeeCCcccCCC
Q 011608 165 PLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPIGPVVRSMG 244 (481)
Q Consensus 165 ~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGpl~~~~~ 244 (481)
+||+. ...+ .+..+ .+..+|++.... + + ..++.++|+.++...
T Consensus 125 ---~~g~~------------------nr~~------~~~a~-~v~~~f~~~~~~----~----~-~~k~~~tG~Pvr~~~ 167 (352)
T PRK12446 125 ---TPGLA------------------NKIA------LRFAS-KIFVTFEEAAKH----L----P-KEKVIYTGSPVREEV 167 (352)
T ss_pred ---CccHH------------------HHHH------HHhhC-EEEEEccchhhh----C----C-CCCeEEECCcCCccc
Confidence 11111 0000 11112 223334321111 1 1 124889998886543
Q ss_pred CCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHH-HHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCC
Q 011608 245 SSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQ-MIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGT 323 (481)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~-~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (481)
.. ...++..+-+.-.+++++|+|+.||.++...++ +.+++..+.. +.+++|+++...
T Consensus 168 ~~--~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~------------------- 225 (352)
T PRK12446 168 LK--GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN------------------- 225 (352)
T ss_pred cc--ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch-------------------
Confidence 21 112222222332345669999999987755544 3344444422 478888885431
Q ss_pred CCCCchhHHhhhcCCCccccccC-c-hhhhhccccCCceeeecCCchhHHHHHcCcceeecccc-----cchhhhHHHHH
Q 011608 324 PDYLPDGFLTRNAKMGLVVPDWA-P-QVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLY-----AEQKMNATMLA 396 (481)
Q Consensus 324 ~~~lp~~~~~~~~~~~~~v~~~~-p-q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~-----~DQ~~na~~v~ 396 (481)
+.. ..+.. .++.+..|+ + -.+++.+++ ++|||||.+|++|++++|+|+|++|+. +||..||+.+
T Consensus 226 ---~~~-~~~~~--~~~~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l- 296 (352)
T PRK12446 226 ---LDD-SLQNK--EGYRQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESF- 296 (352)
T ss_pred ---HHH-HHhhc--CCcEEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHH-
Confidence 101 11111 144555777 4 346888888 999999999999999999999999985 5899999999
Q ss_pred HhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHH
Q 011608 397 EELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVK 440 (481)
Q Consensus 397 ~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~ 440 (481)
++.|+|..+.. ++++++.|.+++.+++.|++ .|+++++
T Consensus 297 ~~~g~~~~l~~----~~~~~~~l~~~l~~ll~~~~--~~~~~~~ 334 (352)
T PRK12446 297 ERQGYASVLYE----EDVTVNSLIKHVEELSHNNE--KYKTALK 334 (352)
T ss_pred HHCCCEEEcch----hcCCHHHHHHHHHHHHcCHH--HHHHHHH
Confidence 69999999863 78899999999999997753 1554443
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=7.2e-22 Score=190.09 Aligned_cols=326 Identities=18% Similarity=0.198 Sum_probs=203.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCC-eEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDF-QVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVI 84 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (481)
+.|++...++.||+.|.++|+++|.++ |+ +|.++.+....+ +.+... .++.++.|+....... .... ...
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~-g~~~v~~~~~~~~~e---~~l~~~---~~~~~~~I~~~~~~~~-~~~~-~~~ 71 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKR-GWEQVIVLGTGDGLE---AFLVKQ---YGIEFELIPSGGLRRK-GSLK-LLK 71 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhh-CccEEEEecccccce---eeeccc---cCceEEEEeccccccc-CcHH-HHH
Confidence 468888889999999999999999999 99 577776663222 221111 2566777765443332 1111 111
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCcEEEE--cCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccCC
Q 011608 85 KIIFMMRESLPALRSSISTLKPRPTALFA--DLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGR 162 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~D~VI~--D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (481)
..... -........+|++. +||+|++ -+.+..+..+|..+|||+++..+..
T Consensus 72 ~~~~~-~~~~~~a~~il~~~--kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~------------------------ 124 (357)
T COG0707 72 APFKL-LKGVLQARKILKKL--KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA------------------------ 124 (357)
T ss_pred HHHHH-HHHHHHHHHHHHHc--CCCEEEecCCccccHHHHHHHhCCCCEEEEecCC------------------------
Confidence 11122 23355677889988 9999997 4455556788999999999866543
Q ss_pred CCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeeeCCcccC
Q 011608 163 KQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPIGPVVRS 242 (481)
Q Consensus 163 ~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGpl~~~ 242 (481)
.||..+ ... .+.+ ..+..+|...+.. ..-.+...+|..++.
T Consensus 125 -----~~G~an------------------k~~------~~~a-~~V~~~f~~~~~~---------~~~~~~~~tG~Pvr~ 165 (357)
T COG0707 125 -----VPGLAN------------------KIL------SKFA-KKVASAFPKLEAG---------VKPENVVVTGIPVRP 165 (357)
T ss_pred -----CcchhH------------------HHh------HHhh-ceeeecccccccc---------CCCCceEEecCcccH
Confidence 222210 000 1111 1122333321111 001137888865543
Q ss_pred CCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHH-HHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCC
Q 011608 243 MGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQ-MIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSD 321 (481)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~-~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 321 (481)
+-.. .+.......... .+++|+|+.||++...-++ +..+...+.+ +..+++..+.+.
T Consensus 166 ~~~~---~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~----------------- 223 (357)
T COG0707 166 EFEE---LPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND----------------- 223 (357)
T ss_pred Hhhc---cchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch-----------------
Confidence 2211 111121222221 4569999999987754443 3334444433 467777764331
Q ss_pred CCCCCCchhHHhhhcCCC-ccccccCchh-hhhccccCCceeeecCCchhHHHHHcCcceeecccc----cchhhhHHHH
Q 011608 322 GTPDYLPDGFLTRNAKMG-LVVPDWAPQV-EILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLY----AEQKMNATML 395 (481)
Q Consensus 322 ~~~~~lp~~~~~~~~~~~-~~v~~~~pq~-~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~----~DQ~~na~~v 395 (481)
...........+ +.+..|..++ ++++.++ ++||+.|.+|+.|++++|+|+|.+|+. +||..||..+
T Consensus 224 ------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l 295 (357)
T COG0707 224 ------LEELKSAYNELGVVRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL 295 (357)
T ss_pred ------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH
Confidence 134444444434 7777888764 5777766 999999999999999999999999985 4999999999
Q ss_pred HHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC-chHHHHHHHHH
Q 011608 396 AEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK-EGQALRSRVKE 441 (481)
Q Consensus 396 ~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~-~~~~~r~~a~~ 441 (481)
++.|.|..++. .++|++++.+.|.+++.++ ..+.|+++++.
T Consensus 296 -~~~gaa~~i~~----~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~ 337 (357)
T COG0707 296 -EKAGAALVIRQ----SELTPEKLAELILRLLSNPEKLKAMAENAKK 337 (357)
T ss_pred -HhCCCEEEecc----ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 79999999874 7799999999999999873 33334444433
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.91 E-value=1.9e-22 Score=195.61 Aligned_cols=303 Identities=19% Similarity=0.244 Sum_probs=185.2
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHH
Q 011608 6 THIALLASP-GMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVI 84 (481)
Q Consensus 6 ~~vvl~~~p-~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (481)
|||++...+ +.||+...+.|+++| + ||+|+|++.....+.+.. .+....++....... ....+...
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--r-g~~v~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~ 67 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--R-GHEVTFITSGPAPEFLKP---------RFPVREIPGLGPIQE-NGRLDRWK 67 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--c-cCceEEEEcCCcHHHhcc---------ccCEEEccCceEecc-CCccchHH
Confidence 688888876 779999999999999 7 899999998854333211 123444433221111 11111111
Q ss_pred HHH------HHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhcc
Q 011608 85 KII------FMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEE 158 (481)
Q Consensus 85 ~~~------~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (481)
... ...........+++++. +||+||+|.. +.+..+|+..|+|++.+........
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~~~---------------- 128 (318)
T PF13528_consen 68 TVRNNIRWLARLARRIRREIRWLREF--RPDLVISDFY-PLAALAARRAGIPVIVISNQYWFLH---------------- 128 (318)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHccc----------------
Confidence 111 11233344555666777 9999999964 4466789999999998776542100
Q ss_pred ccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhh--hcccceEEecChhhhcHHHHHHHHhccCCCCCeeee
Q 011608 159 HYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLE--MVTADGILINTWEDLEPTTLASLRDGISKLPPIYPI 236 (481)
Q Consensus 159 ~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~v 236 (481)
+... ... .........+.... ....+..+..++. .... ......++
T Consensus 129 ----------~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~----------~~~~~~~~ 176 (318)
T PF13528_consen 129 ----------PNFW-LPW----------DQDFGRLIERYIDRYHFPPADRRLALSFY-PPLP----------PFFRVPFV 176 (318)
T ss_pred ----------ccCC-cch----------hhhHHHHHHHhhhhccCCcccceecCCcc-cccc----------cccccccc
Confidence 0000 000 00000111111111 2222233333333 1000 01136678
Q ss_pred CCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCC-CcEEEEEcCCCCCCCCCccccc
Q 011608 237 GPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQ-QRFIWVVRPPMDNDVSGSFFKV 315 (481)
Q Consensus 237 Gpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~ 315 (481)
||+...+... .+ . .+++.|+|+||..... .++++++..+ ..+++. +....
T Consensus 177 ~p~~~~~~~~---~~-------~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~---------- 227 (318)
T PF13528_consen 177 GPIIRPEIRE---LP-------P--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAA---------- 227 (318)
T ss_pred Cchhcccccc---cC-------C--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCcc----------
Confidence 8887653322 11 1 1334799999975332 6667777766 455554 33210
Q ss_pred CCCCCCCCCCCCchhHHhhhcCCCccccccC--chhhhhccccCCceeeecCCchhHHHHHcCcceeeccc--ccchhhh
Q 011608 316 GDGSSDGTPDYLPDGFLTRNAKMGLVVPDWA--PQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPL--YAEQKMN 391 (481)
Q Consensus 316 ~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~--pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~--~~DQ~~n 391 (481)
... ..|+.+.++. +-.++|..++ ++|||||+||++|++++|+|+|++|. ..+|..|
T Consensus 228 ---------~~~---------~~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~ 287 (318)
T PF13528_consen 228 ---------DPR---------PGNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALVIPRPGQDEQEYN 287 (318)
T ss_pred ---------ccc---------CCCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHH
Confidence 111 2278887776 3467888877 99999999999999999999999999 6799999
Q ss_pred HHHHHHhhceeEeccccCCCCccCHHHHHHHHHHH
Q 011608 392 ATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRI 426 (481)
Q Consensus 392 a~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~v 426 (481)
|+.+ +++|+|..++. ++++++.|+++|+++
T Consensus 288 a~~l-~~~G~~~~~~~----~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 288 ARKL-EELGLGIVLSQ----EDLTPERLAEFLERL 317 (318)
T ss_pred HHHH-HHCCCeEEccc----ccCCHHHHHHHHhcC
Confidence 9999 79999999875 789999999999764
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.88 E-value=1.6e-20 Score=181.84 Aligned_cols=305 Identities=17% Similarity=0.170 Sum_probs=168.2
Q ss_pred EEEEEcCCCc-cCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceE-EEecCCCCCCCCCCCCccHHH
Q 011608 7 HIALLASPGM-GHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFN-IVSLPPVDISALLDADASIVI 84 (481)
Q Consensus 7 ~vvl~~~p~~-GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~ 84 (481)
||++...+.. ||+.|.++|+++|.+ ||+|+|+++......+... ++. +..++....... ....+...
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~--g~ev~~~~~~~~~~~~~~~--------~~~~~~~~p~~~~~~~-~~~~~~~~ 69 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN--DYEVSYIASGRSKNYISKY--------GFKVFETFPGIKLKGE-DGKVNIVK 69 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC--CCeEEEEEcCCHHHhhhhh--------cCcceeccCCceEeec-CCcCcHHH
Confidence 4666555555 999999999999995 7999999877522222211 121 222221111100 00011111
Q ss_pred HHH---HHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccC
Q 011608 85 KII---FMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYG 161 (481)
Q Consensus 85 ~~~---~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (481)
.+. .+.........+++++. +||+||+| +.+.+..+|+.+|||++.+..+.. .
T Consensus 70 ~l~~~~~~~~~~~~~~~~~l~~~--~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~--------~------------- 125 (321)
T TIGR00661 70 TLRNKEYSPKKAIRREINIIREY--NPDLIISD-FEYSTVVAAKLLKIPVICISNQNY--------T------------- 125 (321)
T ss_pred HHHhhccccHHHHHHHHHHHHhc--CCCEEEEC-CchHHHHHHHhcCCCEEEEecchh--------h-------------
Confidence 121 11122344455677888 99999999 566668899999999997664221 0
Q ss_pred CCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCee--eeCCc
Q 011608 162 RKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIY--PIGPV 239 (481)
Q Consensus 162 ~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~--~vGpl 239 (481)
..|+.. .......+.....+ ....+.+....+..... ..|++. .-+|.
T Consensus 126 -----~~~~~~------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------~~p~~~~~~~~~~ 175 (321)
T TIGR00661 126 -----RYPLKT------------DLIVYPTMAALRIF--NERCERFIVPDYPFPYT-----------ICPKIIKNMEGPL 175 (321)
T ss_pred -----cCCccc------------chhHHHHHHHHHHh--ccccceEeeecCCCCCC-----------CCccccccCCCcc
Confidence 011100 00000000111111 11122222222211110 011110 00111
Q ss_pred ccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCC
Q 011608 240 VRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGS 319 (481)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 319 (481)
...+..+|... +++.|+|.+||.. ...+++++++.+. +.+++.....
T Consensus 176 ----------~~~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~~-------------- 222 (321)
T TIGR00661 176 ----------IRYDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYEV-------------- 222 (321)
T ss_pred ----------cchhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCCC--------------
Confidence 11122223222 2346888888742 2456777777653 2233222111
Q ss_pred CCCCCCCCchhHHhhhcCCCccccccCc--hhhhhccccCCceeeecCCchhHHHHHcCcceeeccccc--chhhhHHHH
Q 011608 320 SDGTPDYLPDGFLTRNAKMGLVVPDWAP--QVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYA--EQKMNATML 395 (481)
Q Consensus 320 ~~~~~~~lp~~~~~~~~~~~~~v~~~~p--q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~v 395 (481)
....+++ |+.+.+|.| ..++|+.++ ++|||||++|++||+++|+|+|++|..+ ||..||+.+
T Consensus 223 ---~~~~~~~---------~v~~~~~~~~~~~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l 288 (321)
T TIGR00661 223 ---AKNSYNE---------NVEIRRITTDNFKELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKL 288 (321)
T ss_pred ---CccccCC---------CEEEEECChHHHHHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH
Confidence 0112222 788779997 345666766 9999999999999999999999999965 899999999
Q ss_pred HHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 396 AEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 396 ~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
++.|+|+.++. .++ ++.+++.++++|+.
T Consensus 289 -~~~g~~~~l~~----~~~---~~~~~~~~~~~~~~ 316 (321)
T TIGR00661 289 -EDLGCGIALEY----KEL---RLLEAILDIRNMKR 316 (321)
T ss_pred -HHCCCEEEcCh----hhH---HHHHHHHhcccccc
Confidence 69999999863 444 66667777777766
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.81 E-value=2.1e-17 Score=162.91 Aligned_cols=338 Identities=15% Similarity=0.115 Sum_probs=194.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIK 85 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 85 (481)
|+|+++..+..||....+.|+++|.++ ||+|++++.+..... ..++. .++.++.++....... ........
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~-g~ev~vv~~~~~~~~--~~~~~----~g~~~~~~~~~~~~~~--~~~~~l~~ 72 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKR-GWEVLYLGTARGMEA--RLVPK----AGIEFHFIPSGGLRRK--GSLANLKA 72 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhC-CCEEEEEECCCchhh--hcccc----CCCcEEEEeccCcCCC--ChHHHHHH
Confidence 789999988999999999999999999 999999998642110 00111 2455555543221111 11111111
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCcEEEEcCC--CchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccCCC
Q 011608 86 IIFMMRESLPALRSSISTLKPRPTALFADLF--GTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGRK 163 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 163 (481)
...+ -.....+..++++. +||+|++... ...+..+++..++|++......
T Consensus 73 ~~~~-~~~~~~~~~~ik~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------------------- 124 (357)
T PRK00726 73 PFKL-LKGVLQARKILKRF--KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA------------------------- 124 (357)
T ss_pred HHHH-HHHHHHHHHHHHhc--CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC-------------------------
Confidence 1112 22334556677777 9999998853 3334567888899987532100
Q ss_pred CCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeeeCCcccCC
Q 011608 164 QPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPIGPVVRSM 243 (481)
Q Consensus 164 ~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGpl~~~~ 243 (481)
.++ ....+ ..+..+.++..+-..+ ... ...++.++|+.+..+
T Consensus 125 ----~~~-------------------~~~r~-----~~~~~d~ii~~~~~~~--------~~~--~~~~i~vi~n~v~~~ 166 (357)
T PRK00726 125 ----VPG-------------------LANKL-----LARFAKKVATAFPGAF--------PEF--FKPKAVVTGNPVREE 166 (357)
T ss_pred ----Ccc-------------------HHHHH-----HHHHhchheECchhhh--------hcc--CCCCEEEECCCCChH
Confidence 000 00000 0112233322221111 000 122588888776542
Q ss_pred CCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHH-HHHHHHHHhCCC--cEEEEEcCCCCCCCCCcccccCCCCC
Q 011608 244 GSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQM-IEVAWGLELSQQ--RFIWVVRPPMDNDVSGSFFKVGDGSS 320 (481)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~-~~~~~al~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~ 320 (481)
... ..... .++ ...+...+|++..|+. ..... ..+.+++.++.. .++|.++.+.
T Consensus 167 ~~~--~~~~~-~~~-~~~~~~~~i~~~gg~~---~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~---------------- 223 (357)
T PRK00726 167 ILA--LAAPP-ARL-AGREGKPTLLVVGGSQ---GARVLNEAVPEALALLPEALQVIHQTGKGD---------------- 223 (357)
T ss_pred hhc--ccchh-hhc-cCCCCCeEEEEECCcH---hHHHHHHHHHHHHHHhhhCcEEEEEcCCCc----------------
Confidence 211 01110 111 1112333666655553 22223 333366655443 3445543321
Q ss_pred CCCCCCCchhHHhhhc-CCCccccccCc-hhhhhccccCCceeeecCCchhHHHHHcCcceeeccc----ccchhhhHHH
Q 011608 321 DGTPDYLPDGFLTRNA-KMGLVVPDWAP-QVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPL----YAEQKMNATM 394 (481)
Q Consensus 321 ~~~~~~lp~~~~~~~~-~~~~~v~~~~p-q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~----~~DQ~~na~~ 394 (481)
. +...+... +-++.+.+|+. ..++++.++ ++|+|+|.++++||+++|+|+|++|. .+||..|+..
T Consensus 224 ------~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~ 294 (357)
T PRK00726 224 ------L-EEVRAAYAAGINAEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARA 294 (357)
T ss_pred ------H-HHHHHHhhcCCcEEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHH
Confidence 1 23332232 11366778884 468898877 89999999999999999999999997 4689999999
Q ss_pred HHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHH
Q 011608 395 LAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQ 462 (481)
Q Consensus 395 v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~ 462 (481)
+ .+.|.|..++. ++++++.|.++|+++++|++ +++++.+-+++ ..++++..+.++.
T Consensus 295 i-~~~~~g~~~~~----~~~~~~~l~~~i~~ll~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~ 350 (357)
T PRK00726 295 L-VDAGAALLIPQ----SDLTPEKLAEKLLELLSDPE---RLEAMAEAARA----LGKPDAAERLADL 350 (357)
T ss_pred H-HHCCCEEEEEc----ccCCHHHHHHHHHHHHcCHH---HHHHHHHHHHh----cCCcCHHHHHHHH
Confidence 8 69999999874 66789999999999999876 65555444444 3344444444333
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.75 E-value=9.4e-16 Score=150.81 Aligned_cols=314 Identities=17% Similarity=0.153 Sum_probs=181.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHH
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKI 86 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (481)
||++..-+..||....+.|++.|.++ ||+|++++....... .... ..++.+..++...... ......+
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~-G~ev~v~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~ 68 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER-GAEVLFLGTKRGLEA-----RLVP-KAGIPLHTIPVGGLRR-----KGSLKKL 68 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhC-CCEEEEEECCCcchh-----hccc-ccCCceEEEEecCcCC-----CChHHHH
Confidence 58888889999999999999999999 999999987632110 0011 0145555555322211 1111111
Q ss_pred HHHH--HHhhHHHHHHHhhcCCCCcEEEEcCC--CchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccCC
Q 011608 87 IFMM--RESLPALRSSISTLKPRPTALFADLF--GTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGR 162 (481)
Q Consensus 87 ~~~~--~~~~~~~~~~l~~~~~~~D~VI~D~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (481)
.... -.....+..++++. +||+|++... ...+..+|...++|++......
T Consensus 69 ~~~~~~~~~~~~~~~~i~~~--~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~------------------------ 122 (350)
T cd03785 69 KAPFKLLKGVLQARKILKKF--KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA------------------------ 122 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhc--CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC------------------------
Confidence 1111 22234566677777 9999998642 3335567888999987532100
Q ss_pred CCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeeeCCcccC
Q 011608 163 KQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPIGPVVRS 242 (481)
Q Consensus 163 ~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGpl~~~ 242 (481)
.++ ....+ ..+..+.++..+-...+. + + ..++.++|+.+..
T Consensus 123 -----~~~-------------------~~~~~-----~~~~~~~vi~~s~~~~~~-----~----~-~~~~~~i~n~v~~ 163 (350)
T cd03785 123 -----VPG-------------------LANRL-----LARFADRVALSFPETAKY-----F----P-KDKAVVTGNPVRE 163 (350)
T ss_pred -----Ccc-------------------HHHHH-----HHHhhCEEEEcchhhhhc-----C----C-CCcEEEECCCCch
Confidence 000 00000 112244444443222111 0 1 1247778865543
Q ss_pred CCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChH-HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCC
Q 011608 243 MGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSAN-QMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSD 321 (481)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~-~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 321 (481)
.... .... .+.+...+++.+|++..|+....... .+.++++.+.+.+..+++.++...
T Consensus 164 ~~~~---~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~----------------- 222 (350)
T cd03785 164 EILA---LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD----------------- 222 (350)
T ss_pred HHhh---hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc-----------------
Confidence 2111 1111 22222223344666666654321111 122333344333344555553221
Q ss_pred CCCCCCchhHHhhhc--CCCccccccC-chhhhhccccCCceeeecCCchhHHHHHcCcceeeccc----ccchhhhHHH
Q 011608 322 GTPDYLPDGFLTRNA--KMGLVVPDWA-PQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPL----YAEQKMNATM 394 (481)
Q Consensus 322 ~~~~~lp~~~~~~~~--~~~~~v~~~~-pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~----~~DQ~~na~~ 394 (481)
.+.+.+... ..++.+.+|+ +..++|..++ ++|+++|.+|+.||+++|+|+|++|. ..+|..|+..
T Consensus 223 ------~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~ 294 (350)
T cd03785 223 ------LEEVKKAYEELGVNYEVFPFIDDMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARA 294 (350)
T ss_pred ------HHHHHHHHhccCCCeEEeehhhhHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHH
Confidence 022222222 2478888888 4567888877 89999999999999999999999986 4679999999
Q ss_pred HHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 395 LAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 395 v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
+ .+.|.|..++. .+.+.+++.++|++++.|++
T Consensus 295 l-~~~g~g~~v~~----~~~~~~~l~~~i~~ll~~~~ 326 (350)
T cd03785 295 L-VKAGAAVLIPQ----EELTPERLAAALLELLSDPE 326 (350)
T ss_pred H-HhCCCEEEEec----CCCCHHHHHHHHHHHhcCHH
Confidence 8 58899988863 45789999999999997754
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.69 E-value=1.5e-14 Score=142.05 Aligned_cols=312 Identities=17% Similarity=0.167 Sum_probs=170.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIK 85 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 85 (481)
|+|+|+.-+..||+.....|+++|.++ ||+|++++.+.... ..+... .++.++.++....... . .......
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~-g~eV~vv~~~~~~~---~~~~~~---~g~~~~~i~~~~~~~~-~-~~~~l~~ 71 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKR-GVEVLWLGTKRGLE---KRLVPK---AGIEFYFIPVGGLRRK-G-SFRLIKT 71 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhC-CCEEEEEeCCCcch---hccccc---CCCceEEEeccCcCCC-C-hHHHHHH
Confidence 589999999999999878999999999 99999998753211 111111 2455555543221111 0 0111111
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCc--hHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccCCC
Q 011608 86 IIFMMRESLPALRSSISTLKPRPTALFADLFGT--EAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGRK 163 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 163 (481)
.... ......+.+++++. +||+|++..... .+..+++..++|++.+....
T Consensus 72 ~~~~-~~~~~~l~~~i~~~--~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------------------- 123 (348)
T TIGR01133 72 PLKL-LKAVFQARRILKKF--KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNA------------------------- 123 (348)
T ss_pred HHHH-HHHHHHHHHHHHhc--CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCC-------------------------
Confidence 1111 12334566778877 999999875332 34456888899987421100
Q ss_pred CCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeeeCCcccCC
Q 011608 164 QPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPIGPVVRSM 243 (481)
Q Consensus 164 ~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGpl~~~~ 243 (481)
.++ ....+ ..+..+.++..+- +.... . ...+||..+...
T Consensus 124 ----~~~-------------------~~~~~-----~~~~~d~ii~~~~-~~~~~-----------~-~~~~i~n~v~~~ 162 (348)
T TIGR01133 124 ----VPG-------------------LTNKL-----LSRFAKKVLISFP-GAKDH-----------F-EAVLVGNPVRQE 162 (348)
T ss_pred ----Ccc-------------------HHHHH-----HHHHhCeeEECch-hHhhc-----------C-CceEEcCCcCHH
Confidence 000 00000 0123444444332 11100 0 234555444321
Q ss_pred CCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHh---CCCcEEEEEcCCCCCCCCCcccccCCCCC
Q 011608 244 GSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLEL---SQQRFIWVVRPPMDNDVSGSFFKVGDGSS 320 (481)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 320 (481)
... .+.. .+++.-.+++.+|.+..|+... ......+.++++. .+.++++..+..
T Consensus 163 ~~~---~~~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~----------------- 219 (348)
T TIGR01133 163 IRS---LPVP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKN----------------- 219 (348)
T ss_pred Hhc---ccch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcc-----------------
Confidence 100 0000 1122211233355444455432 2212223344433 344555443211
Q ss_pred CCCCCCCchhHHhhhcCCCc-cccccC--chhhhhccccCCceeeecCCchhHHHHHcCcceeecccc---cchhhhHHH
Q 011608 321 DGTPDYLPDGFLTRNAKMGL-VVPDWA--PQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLY---AEQKMNATM 394 (481)
Q Consensus 321 ~~~~~~lp~~~~~~~~~~~~-~v~~~~--pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~---~DQ~~na~~ 394 (481)
.. +.+.+.....++ .+..|. +..++++.++ ++|+++|.+++.||+++|+|+|++|.. ++|..|+..
T Consensus 220 -----~~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~ 291 (348)
T TIGR01133 220 -----DL-EKVKNVYQELGIEAIVTFIDENMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKF 291 (348)
T ss_pred -----hH-HHHHHHHhhCCceEEecCcccCHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHH
Confidence 11 223332222121 111233 4567888877 899999988999999999999999874 578889988
Q ss_pred HHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 395 LAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 395 v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
+ ++.|.|..++. ++.++++|.++|++++.|++
T Consensus 292 i-~~~~~G~~~~~----~~~~~~~l~~~i~~ll~~~~ 323 (348)
T TIGR01133 292 L-EDLGAGLVIRQ----KELLPEKLLEALLKLLLDPA 323 (348)
T ss_pred H-HHCCCEEEEec----ccCCHHHHHHHHHHHHcCHH
Confidence 8 68899988764 66789999999999998765
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.67 E-value=5.3e-15 Score=146.40 Aligned_cols=351 Identities=13% Similarity=0.070 Sum_probs=190.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIK 85 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 85 (481)
++|++..-++.||++|. +|+++|+++ |++|+|++.... ..++. ... ..+.+..++... + .+....
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~-~~~~~~~g~gg~--~m~~~--g~~--~~~~~~~l~v~G---~----~~~l~~ 70 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEH-YPNARFIGVAGP--RMAAE--GCE--VLYSMEELSVMG---L----REVLGR 70 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhc-CCCcEEEEEccH--HHHhC--cCc--cccChHHhhhcc---H----HHHHHH
Confidence 58999999999999999 999999999 999999987621 22221 011 123333333211 1 112222
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCcEEE-EcCCCchHH--HHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccCC
Q 011608 86 IIFMMRESLPALRSSISTLKPRPTALF-ADLFGTEAF--QIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGR 162 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~D~VI-~D~~~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (481)
+..+ .........++++. +||+|| .|+-.+... ..|+.+|||++.+.+-..
T Consensus 71 ~~~~-~~~~~~~~~~l~~~--kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~----------------------- 124 (385)
T TIGR00215 71 LGRL-LKIRKEVVQLAKQA--KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQV----------------------- 124 (385)
T ss_pred HHHH-HHHHHHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcH-----------------------
Confidence 2222 22344667777777 999988 676443433 488999999987532100
Q ss_pred CCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeeeCCcccC
Q 011608 163 KQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPIGPVVRS 242 (481)
Q Consensus 163 ~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGpl~~~ 242 (481)
+.+.+. + +..+ .+..+.+ ..+++. +... +... + -+..+||..+.+
T Consensus 125 ---waw~~~--------------~-~r~l---------~~~~d~v-~~~~~~-e~~~---~~~~--g-~~~~~vGnPv~~ 169 (385)
T TIGR00215 125 ---WAWRKW--------------R-AKKI---------EKATDFL-LAILPF-EKAF---YQKK--N-VPCRFVGHPLLD 169 (385)
T ss_pred ---hhcCcc--------------h-HHHH---------HHHHhHh-hccCCC-cHHH---HHhc--C-CCEEEECCchhh
Confidence 000000 0 0000 1112222 122221 1111 1111 0 146679955533
Q ss_pred CCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCCCcccccCC
Q 011608 243 MGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS-----QQRFIWVVRPPMDNDVSGSFFKVGD 317 (481)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~ 317 (481)
..........+..+-+.-.+++++|.+..||....-......++++++.+ +.++++.......
T Consensus 170 ~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~------------ 237 (385)
T TIGR00215 170 AIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKR------------ 237 (385)
T ss_pred hccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchh------------
Confidence 21110001222222222223455788888886442122344555554432 2345444322100
Q ss_pred CCCCCCCCCCchhHHhhhc-CCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeec----cccc------
Q 011608 318 GSSDGTPDYLPDGFLTRNA-KMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVW----PLYA------ 386 (481)
Q Consensus 318 ~~~~~~~~~lp~~~~~~~~-~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~----P~~~------ 386 (481)
...+ +.+.+..+ ...+....+ +...++..++ ++|+-.|..|+ |++++|+|+|++ |+..
T Consensus 238 ------~~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~ 306 (385)
T TIGR00215 238 ------RLQF-EQIKAEYGPDLQLHLIDG-DARKAMFAAD--AALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRL 306 (385)
T ss_pred ------HHHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHH
Confidence 0000 11111111 112222222 3345787777 89999999877 999999999999 8742
Q ss_pred ---chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC----c-hHHHHHHHHHHHHHHHHHhhcCCChHH
Q 011608 387 ---EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK----E-GQALRSRVKELKHSAKKASTKGGSSYN 458 (481)
Q Consensus 387 ---DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~----~-~~~~r~~a~~l~~~~~~~~~~~g~~~~ 458 (481)
+|..|+..+ ...++..++. +.++|++.|.+.+.++|.|+ + -+.+++..+++++. +.++|++.+
T Consensus 307 ~~~~~~~~~nil-~~~~~~pel~----q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~ 377 (385)
T TIGR00215 307 VKTDYISLPNIL-ANRLLVPELL----QEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQR----IYCNADSER 377 (385)
T ss_pred HcCCeeeccHHh-cCCccchhhc----CCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHH----hcCCCHHHH
Confidence 288899998 4888887765 27799999999999999987 5 23344444444444 666677766
Q ss_pred HHHHHH
Q 011608 459 ALSQVA 464 (481)
Q Consensus 459 ~~~~~~ 464 (481)
+.+.+.
T Consensus 378 ~a~~i~ 383 (385)
T TIGR00215 378 AAQAVL 383 (385)
T ss_pred HHHHHh
Confidence 665543
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.63 E-value=1.5e-13 Score=136.69 Aligned_cols=135 Identities=21% Similarity=0.280 Sum_probs=95.9
Q ss_pred CCcEEEEEeCCCCCCChHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhc--CCC
Q 011608 263 TESVIYVSFGGGGTLSANQMIEVAWGLELS-QQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNA--KMG 339 (481)
Q Consensus 263 ~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~ 339 (481)
++++|++..|+.... ..+..+++++.+. +.+++++.+.+. .+-+.+.+..+ +.+
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~---------------------~~~~~l~~~~~~~~~~ 257 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE---------------------ALKQSLEDLQETNPDA 257 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH---------------------HHHHHHHHHHhcCCCc
Confidence 345777777876432 2456677777654 456666653220 01112222221 237
Q ss_pred ccccccCchh-hhhccccCCceeeecCCchhHHHHHcCcceeec-ccccchhhhHHHHHHhhceeEeccccCCCCccCHH
Q 011608 340 LVVPDWAPQV-EILGHASVGGFLSHCGWNSTLESIVNGVPLIVW-PLYAEQKMNATMLAEELGVAVRPNEMPTENLVKRE 417 (481)
Q Consensus 340 ~~v~~~~pq~-~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~ 417 (481)
+.+.+|+++. +++..++ ++|+..|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|+... +.+
T Consensus 258 v~~~g~~~~~~~l~~~aD--~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~~--------~~~ 326 (380)
T PRK13609 258 LKVFGYVENIDELFRVTS--CMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVIR--------DDE 326 (380)
T ss_pred EEEEechhhHHHHHHhcc--EEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEEC--------CHH
Confidence 8888999874 7888888 899999988999999999999985 6778888999888 6889987642 679
Q ss_pred HHHHHHHHHhcCCc
Q 011608 418 EIEMMVRRILVDKE 431 (481)
Q Consensus 418 ~l~~al~~vl~~~~ 431 (481)
++.++|.+++.|++
T Consensus 327 ~l~~~i~~ll~~~~ 340 (380)
T PRK13609 327 EVFAKTEALLQDDM 340 (380)
T ss_pred HHHHHHHHHHCCHH
Confidence 99999999998765
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.59 E-value=1.2e-13 Score=130.49 Aligned_cols=255 Identities=18% Similarity=0.186 Sum_probs=149.0
Q ss_pred CccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHHHHHHhh
Q 011608 15 GMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIFMMRESL 94 (481)
Q Consensus 15 ~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (481)
+.||+...+.||++|.++ ||+|+|++........ +.+.. .++....++.... ...-.
T Consensus 13 G~GHv~Rcl~LA~~l~~~-g~~v~f~~~~~~~~~~-~~i~~----~g~~v~~~~~~~~-----------------~~~d~ 69 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQ-GAEVAFACKPLPGDLI-DLLLS----AGFPVYELPDESS-----------------RYDDA 69 (279)
T ss_pred cccHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHH-HHHHH----cCCeEEEecCCCc-----------------hhhhH
Confidence 569999999999999999 9999999988544321 11222 2566666653210 01122
Q ss_pred HHHHHHHhhcCCCCcEEEEcCCCchHH--HHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccCCCCCccCCCCc
Q 011608 95 PALRSSISTLKPRPTALFADLFGTEAF--QIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGRKQPLMIPGCR 172 (481)
Q Consensus 95 ~~~~~~l~~~~~~~D~VI~D~~~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~pg~~ 172 (481)
..+.+++++. +||+||+|....... ...+..+.+.+.+-=... .
T Consensus 70 ~~~~~~l~~~--~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~--------------------------------~ 115 (279)
T TIGR03590 70 LELINLLEEE--KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLAD--------------------------------R 115 (279)
T ss_pred HHHHHHHHhc--CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCC--------------------------------C
Confidence 3466677777 999999998655432 334445555554321000 0
Q ss_pred ccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCC--CeeeeCC---cccCCCCCC
Q 011608 173 SVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLP--PIYPIGP---VVRSMGSSH 247 (481)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p--~~~~vGp---l~~~~~~~~ 247 (481)
+. .++ +++|.-...+. ..+ ... .| ..++.|| +++++-..
T Consensus 116 ~~----------------------------~~D-~vin~~~~~~~--~~y-~~~---~~~~~~~l~G~~Y~~lr~eF~~- 159 (279)
T TIGR03590 116 PH----------------------------DCD-LLLDQNLGADA--SDY-QGL---VPANCRLLLGPSYALLREEFYQ- 159 (279)
T ss_pred Cc----------------------------CCC-EEEeCCCCcCH--hHh-ccc---CcCCCeEEecchHHhhhHHHHH-
Confidence 00 011 11111111110 000 000 11 2567787 44332110
Q ss_pred CCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCCcccccCCCCCCCCCC
Q 011608 248 MSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS--QQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPD 325 (481)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (481)
..+ .-...++.+.|+|+||.... ......+++++.+. +.++.++++...
T Consensus 160 --~~~----~~~~~~~~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~--------------------- 210 (279)
T TIGR03590 160 --LAT----ANKRRKPLRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSN--------------------- 210 (279)
T ss_pred --hhH----hhhcccccCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCC---------------------
Confidence 000 00011122479999996433 23456677777764 456777775431
Q ss_pred CCchhHHhhhc-CCCccccccCchh-hhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHHH
Q 011608 326 YLPDGFLTRNA-KMGLVVPDWAPQV-EILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATM 394 (481)
Q Consensus 326 ~lp~~~~~~~~-~~~~~v~~~~pq~-~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~ 394 (481)
...+.+.+..+ ..|+.+..+++++ +++..++ ++||+|| +|+.|++++|+|+|++|+..+|..||+.
T Consensus 211 ~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aD--l~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 211 PNLDELKKFAKEYPNIILFIDVENMAELMNEAD--LAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred cCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCC--EEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 11133333332 2478888999986 7898888 9999999 9999999999999999999999999875
No 38
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.58 E-value=1.4e-13 Score=136.94 Aligned_cols=175 Identities=14% Similarity=0.166 Sum_probs=114.4
Q ss_pred CCcEEEEEeCCCCCCChHHHHHHHHHHHh-C-CCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhc-CCC
Q 011608 263 TESVIYVSFGGGGTLSANQMIEVAWGLEL-S-QQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNA-KMG 339 (481)
Q Consensus 263 ~~~vv~vs~GS~~~~~~~~~~~~~~al~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~ 339 (481)
++++|+++.|+... ...+..+++++.+ . +.+++++.+.+. .+-+.+.+... ..+
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~---------------------~l~~~l~~~~~~~~~ 257 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK---------------------ELKRSLTAKFKSNEN 257 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH---------------------HHHHHHHHHhccCCC
Confidence 45588888888653 2345555555433 2 345666553220 11122222221 236
Q ss_pred ccccccCchh-hhhccccCCceeeecCCchhHHHHHcCcceeec-ccccchhhhHHHHHHhhceeEeccccCCCCccCHH
Q 011608 340 LVVPDWAPQV-EILGHASVGGFLSHCGWNSTLESIVNGVPLIVW-PLYAEQKMNATMLAEELGVAVRPNEMPTENLVKRE 417 (481)
Q Consensus 340 ~~v~~~~pq~-~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~ 417 (481)
+.+.+|+++. +++..++ ++|+..|..|+.||+++|+|+|++ |..++|..|+..+ ++.|+|+..+ +.+
T Consensus 258 v~~~G~~~~~~~~~~~aD--l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~~--------~~~ 326 (391)
T PRK13608 258 VLILGYTKHMNEWMASSQ--LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIAD--------TPE 326 (391)
T ss_pred eEEEeccchHHHHHHhhh--EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEeC--------CHH
Confidence 7888999764 6888888 899988888999999999999998 7777788999998 7999998753 788
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH--HHHHHHHhh
Q 011608 418 EIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEM--SLQGLMAKV 478 (481)
Q Consensus 418 ~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~ 478 (481)
++.++|.+++.|++ .+ +++++.++. ..+..+...-++.+.+.+.. ..|++..||
T Consensus 327 ~l~~~i~~ll~~~~---~~---~~m~~~~~~-~~~~~s~~~i~~~l~~l~~~~~~~~~~~~~~ 382 (391)
T PRK13608 327 EAIKIVASLTNGNE---QL---TNMISTMEQ-DKIKYATQTICRDLLDLIGHSSQPQEIYGKV 382 (391)
T ss_pred HHHHHHHHHhcCHH---HH---HHHHHHHHH-hcCCCCHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 99999999998754 22 233333333 23345555555566555554 355666655
No 39
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.55 E-value=1.1e-12 Score=120.64 Aligned_cols=335 Identities=17% Similarity=0.196 Sum_probs=196.5
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCC-CCCCCc
Q 011608 5 KTHIALLAS--PGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISA-LLDADA 80 (481)
Q Consensus 5 ~~~vvl~~~--p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~ 80 (481)
++||+|++. .+.||+.....+|++|.+.. |.+|++++.-+... ..+.+.+++++.+|.....+ ......
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~-------~F~~~~gVd~V~LPsl~k~~~G~~~~~ 81 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAG-------GFPGPAGVDFVKLPSLIKGDNGEYGLV 81 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccC-------CCCCcccCceEecCceEecCCCceeee
Confidence 469999998 56799999999999999775 89999999875433 23333689999999643221 101111
Q ss_pred cHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHH-HHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccc
Q 011608 81 SIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAF-QIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEH 159 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~-~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (481)
+.-.....+.+...+.+....+.+ +||++|+|-+-++.. .+...+ .|+-.-.
T Consensus 82 d~~~~l~e~~~~Rs~lil~t~~~f--kPDi~IVd~~P~Glr~EL~ptL------------------~yl~~~~------- 134 (400)
T COG4671 82 DLDGDLEETKKLRSQLILSTAETF--KPDIFIVDKFPFGLRFELLPTL------------------EYLKTTG------- 134 (400)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHhc--CCCEEEEeccccchhhhhhHHH------------------HHHhhcC-------
Confidence 111123444444556778888888 999999998777622 111000 0110000
Q ss_pred cCCCCCccCCCCcccCcccccccccCCCc-hhHHHHHHHhhhhcccceEEe---cChhhhcHHHHHHHHhccCC-CCCee
Q 011608 160 YGRKQPLMIPGCRSVRFQDTLEAFTDPKD-QLFDEYLRIGLEMVTADGILI---NTWEDLEPTTLASLRDGISK-LPPIY 234 (481)
Q Consensus 160 ~~~~~~~~~pg~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~---~s~~~l~~~~~~~~~~~~~~-~p~~~ 234 (481)
...-+-.+++.+....... ...+...+. ..+..+.+++ +.|.+++..+... +. ..++.
T Consensus 135 ----------t~~vL~lr~i~D~p~~~~~~w~~~~~~~~--I~r~yD~V~v~GdP~f~d~~~~~~~~-----~~i~~k~~ 197 (400)
T COG4671 135 ----------TRLVLGLRSIRDIPQELEADWRRAETVRL--INRFYDLVLVYGDPDFYDPLTEFPFA-----PAIRAKMR 197 (400)
T ss_pred ----------CcceeehHhhhhchhhhccchhhhHHHHH--HHHhheEEEEecCccccChhhcCCcc-----Hhhhhhee
Confidence 0000111222222111110 001111111 1123344444 3344443321110 01 12489
Q ss_pred eeCCcccC-CCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHh-CCCcEEEEEcCCCCCCCCCcc
Q 011608 235 PIGPVVRS-MGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLEL-SQQRFIWVVRPPMDNDVSGSF 312 (481)
Q Consensus 235 ~vGpl~~~-~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~~ 312 (481)
|+|.+... +..+ .+. ... +++.-|+||-|. +....+.+...++|-.- .+.+-.|.+-.+
T Consensus 198 ytG~vq~~~~~~~---~p~-----~~~-pE~~~Ilvs~GG-G~dG~eLi~~~l~A~~~l~~l~~~~~ivtG--------- 258 (400)
T COG4671 198 YTGFVQRSLPHLP---LPP-----HEA-PEGFDILVSVGG-GADGAELIETALAAAQLLAGLNHKWLIVTG--------- 258 (400)
T ss_pred EeEEeeccCcCCC---CCC-----cCC-CccceEEEecCC-ChhhHHHHHHHHHHhhhCCCCCcceEEEeC---------
Confidence 99988322 1111 111 111 333468888885 34455556666665544 344423443111
Q ss_pred cccCCCCCCCCCCCCchhHHhhh-----cCCCccccccCch-hhhhccccCCceeeecCCchhHHHHHcCcceeecccc-
Q 011608 313 FKVGDGSSDGTPDYLPDGFLTRN-----AKMGLVVPDWAPQ-VEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLY- 385 (481)
Q Consensus 313 ~~~~~~~~~~~~~~lp~~~~~~~-----~~~~~~v~~~~pq-~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~- 385 (481)
..+|..-.+.+ +.+++.+..|-.+ ..++..++ .+|+-||+||++|-|.+|+|.+++|..
T Consensus 259 ------------P~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~--~vVSm~GYNTvCeILs~~k~aLivPr~~ 324 (400)
T COG4671 259 ------------PFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR--LVVSMGGYNTVCEILSFGKPALIVPRAA 324 (400)
T ss_pred ------------CCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--eeeecccchhhhHHHhCCCceEEeccCC
Confidence 23444332222 2368888888876 55777766 999999999999999999999999997
Q ss_pred --cchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhc
Q 011608 386 --AEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILV 428 (481)
Q Consensus 386 --~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~ 428 (481)
-+|-..|.|+ +++|+--.+-+ ++++++.++++|...++
T Consensus 325 p~eEQliRA~Rl-~~LGL~dvL~p----e~lt~~~La~al~~~l~ 364 (400)
T COG4671 325 PREEQLIRAQRL-EELGLVDVLLP----ENLTPQNLADALKAALA 364 (400)
T ss_pred CcHHHHHHHHHH-HhcCcceeeCc----ccCChHHHHHHHHhccc
Confidence 4899999999 79999977765 88999999999998887
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.55 E-value=6.2e-13 Score=132.35 Aligned_cols=347 Identities=15% Similarity=0.138 Sum_probs=171.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIK 85 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 85 (481)
|+|+++.-++.||++|.. ++++|+++ ++++.+++... ...++.. .+ ..+.+..++.. .. .+....
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~-~~~~~~~~~~~--~~~~~~~--~~--~~~~~~~l~~~---g~----~~~~~~ 66 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKAR-APNLEFVGVGG--PRMQAAG--CE--SLFDMEELAVM---GL----VEVLPR 66 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhc-CCCcEEEEEcc--HHHHhCC--Cc--cccCHHHhhhc---cH----HHHHHH
Confidence 689999999999999999 99999998 78888887542 1222211 11 12222222211 10 111112
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCcEEEE-cCCCchH--HHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccCC
Q 011608 86 IIFMMRESLPALRSSISTLKPRPTALFA-DLFGTEA--FQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGR 162 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~D~VI~-D~~~~~~--~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (481)
+... ......+..+++++ +||+|++ ++-..+. +..|...|||++.+.....+ .
T Consensus 67 ~~~~-~~~~~~~~~~l~~~--kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~-----~---------------- 122 (380)
T PRK00025 67 LPRL-LKIRRRLKRRLLAE--PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVW-----A---------------- 122 (380)
T ss_pred HHHH-HHHHHHHHHHHHHc--CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchh-----h----------------
Confidence 2222 23456677888888 9999875 4322333 34577889998764321100 0
Q ss_pred CCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeeeCCcccC
Q 011608 163 KQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPIGPVVRS 242 (481)
Q Consensus 163 ~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGpl~~~ 242 (481)
..++ ... ...+..+.++..+-.. .. .+... +. ++.++|.....
T Consensus 123 ----~~~~-------------------~~~------~~~~~~d~i~~~~~~~--~~---~~~~~--g~-~~~~~G~p~~~ 165 (380)
T PRK00025 123 ----WRQG-------------------RAF------KIAKATDHVLALFPFE--AA---FYDKL--GV-PVTFVGHPLAD 165 (380)
T ss_pred ----cCch-------------------HHH------HHHHHHhhheeCCccC--HH---HHHhc--CC-CeEEECcCHHH
Confidence 0000 000 0122233333333111 11 11111 12 36778844432
Q ss_pred CCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCCCcccccCC
Q 011608 243 MGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS-----QQRFIWVVRPPMDNDVSGSFFKVGD 317 (481)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~ 317 (481)
..... ....+..+.+.-.+++++|++..||...........+.++++.+ +.+++|+.+.+.
T Consensus 166 ~~~~~-~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~------------- 231 (380)
T PRK00025 166 AIPLL-PDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK------------- 231 (380)
T ss_pred hcccc-cChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh-------------
Confidence 11100 01222322232222344666666764332112234455554432 345666542111
Q ss_pred CCCCCCCCCCchhHHhhhcCC---CccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeeccccc--------
Q 011608 318 GSSDGTPDYLPDGFLTRNAKM---GLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYA-------- 386 (481)
Q Consensus 318 ~~~~~~~~~lp~~~~~~~~~~---~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~-------- 386 (481)
.-+.+.+..... ++.+.+ -.-..++..++ ++|+.+|.+++ ||+++|+|+|++|-..
T Consensus 232 ---------~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aD--l~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~ 298 (380)
T PRK00025 232 ---------RREQIEEALAEYAGLEVTLLD-GQKREAMAAAD--AALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAK 298 (380)
T ss_pred ---------hHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCC--EEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHH
Confidence 002233322221 222211 02356777777 89999998777 9999999999985431
Q ss_pred chhhh-----HHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHhhcCCChHHHH
Q 011608 387 EQKMN-----ATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE-GQALRSRVKELKHSAKKASTKGGSSYNAL 460 (481)
Q Consensus 387 DQ~~n-----a~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~-~~~~r~~a~~l~~~~~~~~~~~g~~~~~~ 460 (481)
+|..| +..+ .+.+++..+. ....+++.|.+++.+++.|++ .+.|+++++++.+. + ..++..+.+
T Consensus 299 ~~~~~~~~~l~~~~-~~~~~~~~~~----~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~----~-~~~a~~~~~ 368 (380)
T PRK00025 299 RLVKVPYVSLPNLL-AGRELVPELL----QEEATPEKLARALLPLLADGARRQALLEGFTELHQQ----L-RCGADERAA 368 (380)
T ss_pred HHHcCCeeehHHHh-cCCCcchhhc----CCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH----h-CCCHHHHHH
Confidence 23222 2222 2333333332 156789999999999999876 23344444444443 4 445554444
Q ss_pred HHHHH
Q 011608 461 SQVAK 465 (481)
Q Consensus 461 ~~~~~ 465 (481)
+.+.+
T Consensus 369 ~~i~~ 373 (380)
T PRK00025 369 QAVLE 373 (380)
T ss_pred HHHHH
Confidence 44433
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.49 E-value=3.1e-15 Score=130.58 Aligned_cols=136 Identities=24% Similarity=0.284 Sum_probs=94.9
Q ss_pred EEEEEeCCCCCCChHH-HHHHHHHHHh--CCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcC--CCc
Q 011608 266 VIYVSFGGGGTLSANQ-MIEVAWGLEL--SQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAK--MGL 340 (481)
Q Consensus 266 vv~vs~GS~~~~~~~~-~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~--~~~ 340 (481)
+|+|+.||.....-.. +..+...+.. ...+++++.+.... ......... .++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~-----------------------~~~~~~~~~~~~~v 57 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY-----------------------EELKIKVENFNPNV 57 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC-----------------------HHHCCCHCCTTCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH-----------------------HHHHHHHhccCCcE
Confidence 5899999865421111 2233333333 24678888765411 111111111 378
Q ss_pred cccccCc-hhhhhccccCCceeeecCCchhHHHHHcCcceeeccccc----chhhhHHHHHHhhceeEeccccCCCCccC
Q 011608 341 VVPDWAP-QVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYA----EQKMNATMLAEELGVAVRPNEMPTENLVK 415 (481)
Q Consensus 341 ~v~~~~p-q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~----DQ~~na~~v~~~~G~g~~~~~~~~~~~~~ 415 (481)
.+.+|++ ..+++..++ ++|||||.||++|++++|+|+|++|... ||..||..+ ++.|+|..+.. ...+
T Consensus 58 ~~~~~~~~m~~~m~~aD--lvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~----~~~~ 130 (167)
T PF04101_consen 58 KVFGFVDNMAELMAAAD--LVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDE----SELN 130 (167)
T ss_dssp EEECSSSSHHHHHHHHS--EEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSEC----CC-S
T ss_pred EEEechhhHHHHHHHcC--EEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCc----ccCC
Confidence 8889999 678999988 9999999999999999999999999998 999999999 69999999874 6677
Q ss_pred HHHHHHHHHHHhcCCc
Q 011608 416 REEIEMMVRRILVDKE 431 (481)
Q Consensus 416 ~~~l~~al~~vl~~~~ 431 (481)
.+.|.++|.+++.++.
T Consensus 131 ~~~L~~~i~~l~~~~~ 146 (167)
T PF04101_consen 131 PEELAEAIEELLSDPE 146 (167)
T ss_dssp CCCHHHHHHCHCCCHH
T ss_pred HHHHHHHHHHHHcCcH
Confidence 9999999999998764
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.46 E-value=7.5e-12 Score=124.39 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=67.9
Q ss_pred CCccccccCch-hhhhccccCCceeeecCCchhHHHHHcCcceeecccccchh-hhHHHHHHhhceeEeccccCCCCccC
Q 011608 338 MGLVVPDWAPQ-VEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQK-MNATMLAEELGVAVRPNEMPTENLVK 415 (481)
Q Consensus 338 ~~~~v~~~~pq-~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~-~na~~v~~~~G~g~~~~~~~~~~~~~ 415 (481)
.++.+.+|+++ .+++..++ ++|+.+|.+|+.||+++|+|+|+.+....|. .|+..+ .+.|.|+.+. +
T Consensus 265 ~~v~~~G~~~~~~~l~~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i-~~~g~g~~~~--------~ 333 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYV-VDNGFGAFSE--------S 333 (382)
T ss_pred CCeEEEeccccHHHHHHhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHH-HhCCceeecC--------C
Confidence 35777899986 45777777 8999999999999999999999998766665 789888 5889997642 7
Q ss_pred HHHHHHHHHHHhcC
Q 011608 416 REEIEMMVRRILVD 429 (481)
Q Consensus 416 ~~~l~~al~~vl~~ 429 (481)
+++|.++|.+++.|
T Consensus 334 ~~~la~~i~~ll~~ 347 (382)
T PLN02605 334 PKEIARIVAEWFGD 347 (382)
T ss_pred HHHHHHHHHHHHcC
Confidence 89999999999987
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.41 E-value=5.7e-11 Score=117.81 Aligned_cols=320 Identities=14% Similarity=0.038 Sum_probs=167.2
Q ss_pred cCHHHHHHHHHHHHh--CCCCeEE---EEecCCCchhhhhh-ccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHHHH
Q 011608 17 GHFIPVLELGKRFAT--QNDFQVT---IFVVATDTSTVQSQ-LRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIFMM 90 (481)
Q Consensus 17 GHi~P~l~La~~L~~--r~Gh~Vt---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (481)
|-=.-.++++++|.+ . |++|. |+++. ...++. ++.. + .+..+|...+.. ......+....
T Consensus 8 ged~~a~ai~~~l~~~~~-~~~v~~~p~vG~~---~~~e~~~ip~~----g-~~~~~~sgg~~~-----~~~~~~~~~~~ 73 (396)
T TIGR03492 8 GEDLIAARIAKALLQLSP-DLNLEALPLVGEG---RAYQNLGIPII----G-PTKELPSGGFSY-----QSLRGLLRDLR 73 (396)
T ss_pred hHHHHHHHHHHHHHhhCC-CCCeEEeCcccCC---HHHhhCCCcee----C-CCCCCCCCCccC-----CCHHHHHHHHH
Confidence 333456889999998 5 99999 99988 333332 2211 2 344444332221 11222222222
Q ss_pred H---HhhHHHHHHHhhcCCCCcEEE--EcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccCCCCC
Q 011608 91 R---ESLPALRSSISTLKPRPTALF--ADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGRKQP 165 (481)
Q Consensus 91 ~---~~~~~~~~~l~~~~~~~D~VI--~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 165 (481)
+ ...-....+++++..+||+|| .|+. .+.+|...|+|++.+.+.-.-.+ +- +...... ....
T Consensus 74 ~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v---~~~aA~~~~~p~~~~~~~esn~~-----~~---~~~~~~~--~~~~ 140 (396)
T TIGR03492 74 AGLVGLTLGQWRALRKWAKKGDLIVAVGDIV---PLLFAWLSGKPYAFVGTAKSDYY-----WE---SGPRRSP--SDEY 140 (396)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCEEEEECcHH---HHHHHHHcCCCceEEEeecccee-----ec---CCCCCcc--chhh
Confidence 2 111222334444445888887 4554 67789999999998655321000 00 0000000 0000
Q ss_pred ccCCCCcccCcccccccccCCCchhHHHHHHHhhhh-cccceEEecChhhhcHHHHHHHHhccCCCCCeeeeCCcccCCC
Q 011608 166 LMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEM-VTADGILINTWEDLEPTTLASLRDGISKLPPIYPIGPVVRSMG 244 (481)
Q Consensus 166 ~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGpl~~~~~ 244 (481)
..+||... ..+ ...+.. +.++. +..++.. ..+.+... +. ++.++|..+.+.-
T Consensus 141 ~~~~G~~~------------------~p~-e~n~l~~~~a~~-v~~~~~~----t~~~l~~~--g~-k~~~vGnPv~d~l 193 (396)
T TIGR03492 141 HRLEGSLY------------------LPW-ERWLMRSRRCLA-VFVRDRL----TARDLRRQ--GV-RASYLGNPMMDGL 193 (396)
T ss_pred hccCCCcc------------------CHH-HHHHhhchhhCE-EeCCCHH----HHHHHHHC--CC-eEEEeCcCHHhcC
Confidence 11222211 111 111112 23333 3333322 22222221 11 6899996554432
Q ss_pred CCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC----CCcEEEEEcCCCCCCCCCcccccCCCCC
Q 011608 245 SSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS----QQRFIWVVRPPMDNDVSGSFFKVGDGSS 320 (481)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 320 (481)
.. .... . ++ +.+++|.+--||-...-.+.+..+.++++.+ +..|++.+.+...
T Consensus 194 ~~---~~~~--~-l~--~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~--------------- 250 (396)
T TIGR03492 194 EP---PERK--P-LL--TGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLS--------------- 250 (396)
T ss_pred cc---cccc--c-cC--CCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCC---------------
Confidence 11 1111 1 22 2334788888886443334455666666654 4567777632211
Q ss_pred CCCCCCCchhHHhhhc------------------CCCccccccCc-hhhhhccccCCceeeecCCchhHHHHHcCcceee
Q 011608 321 DGTPDYLPDGFLTRNA------------------KMGLVVPDWAP-QVEILGHASVGGFLSHCGWNSTLESIVNGVPLIV 381 (481)
Q Consensus 321 ~~~~~~lp~~~~~~~~------------------~~~~~v~~~~p-q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~ 381 (481)
. +.+.+... ..++.+..+.. -.+++..++ ++|+-.|..| .|+...|+|+|+
T Consensus 251 ------~-~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~AD--lvI~rSGt~T-~E~a~lg~P~Il 320 (396)
T TIGR03492 251 ------L-EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWAD--LGIAMAGTAT-EQAVGLGKPVIQ 320 (396)
T ss_pred ------H-HHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCC--EEEECcCHHH-HHHHHhCCCEEE
Confidence 0 11211111 11234434443 356788877 9999999755 999999999999
Q ss_pred cccccchhhhHHHHHHhh----ceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 382 WPLYAEQKMNATMLAEEL----GVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 382 ~P~~~DQ~~na~~v~~~~----G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
+|.-..|. |+... ++. |.++.+. ..+.+.|.+++.+++.|++
T Consensus 321 ip~~~~q~-na~~~-~~~~~l~g~~~~l~------~~~~~~l~~~l~~ll~d~~ 366 (396)
T TIGR03492 321 LPGKGPQF-TYGFA-EAQSRLLGGSVFLA------SKNPEQAAQVVRQLLADPE 366 (396)
T ss_pred EeCCCCHH-HHHHH-HhhHhhcCCEEecC------CCCHHHHHHHHHHHHcCHH
Confidence 99888887 98776 453 6666653 2355999999999998765
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.29 E-value=4.2e-12 Score=107.19 Aligned_cols=119 Identities=15% Similarity=0.170 Sum_probs=79.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHH
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKII 87 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 87 (481)
|+|++.|+.||++|+++||++|++| ||+|++++++.+.+.+.+ .|+.|.+++.. ..+ +...+....+.
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r-Gh~V~~~~~~~~~~~v~~--------~Gl~~~~~~~~--~~~-~~~~~~~~~~~ 68 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR-GHEVRLATPPDFRERVEA--------AGLEFVPIPGD--SRL-PRSLEPLANLR 68 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT-T-EEEEEETGGGHHHHHH--------TT-EEEESSSC--GGG-GHHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc-CCeEEEeecccceecccc--------cCceEEEecCC--cCc-Ccccchhhhhh
Confidence 7899999999999999999999999 999999999988887655 38999998864 111 11001111211
Q ss_pred HH------HHHhhHHHHHHHhhc------CCCCcEEEEcCCCchHHHHHHHhCCceEEEechh
Q 011608 88 FM------MRESLPALRSSISTL------KPRPTALFADLFGTEAFQIADEFEMLKYVYIASN 138 (481)
Q Consensus 88 ~~------~~~~~~~~~~~l~~~------~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~ 138 (481)
.. .......+.+...+. ....|+++.+.....+..+|++++||++.....+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 69 RLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred hHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 11 122222222222221 1267888889888888899999999999977654
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.15 E-value=1.4e-07 Score=92.58 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=62.0
Q ss_pred CCccccccCchhh---hhccccCCceeeecC----CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 338 MGLVVPDWAPQVE---ILGHASVGGFLSHCG----WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 338 ~~~~v~~~~pq~~---lL~~~~~~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
.++.+.+|+++.+ ++..++ ++|+.+. .+++.||+++|+|+|+.+..+ +...+ ++.+.|...+
T Consensus 247 ~~v~~~g~~~~~~~~~~~~~~d--~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~~---- 315 (364)
T cd03814 247 PNVHFLGFLDGEELAAAYASAD--VFVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLVE---- 315 (364)
T ss_pred CcEEEEeccCHHHHHHHHHhCC--EEEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEcC----
Confidence 4788889998765 677777 7776654 478999999999999887554 44555 5668887764
Q ss_pred CCccCHHHHHHHHHHHhcCCc
Q 011608 411 ENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~~ 431 (481)
.-+.+++.++|.+++.|++
T Consensus 316 --~~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 316 --PGDAEAFAAALAALLADPE 334 (364)
T ss_pred --CCCHHHHHHHHHHHHcCHH
Confidence 2477889999999998865
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.13 E-value=1.7e-07 Score=95.89 Aligned_cols=138 Identities=14% Similarity=0.083 Sum_probs=85.5
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCC-CcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccc
Q 011608 266 VIYVSFGGGGTLSANQMIEVAWGLELSQ-QRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPD 344 (481)
Q Consensus 266 vv~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~ 344 (481)
.+++..|+... ...+..++++++..+ .++++ ++.+ ..-+.+.+.....++.+.+
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~i-vG~G----------------------~~~~~l~~~~~~~~V~f~G 318 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAF-VGDG----------------------PYREELEKMFAGTPTVFTG 318 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEE-EeCC----------------------hHHHHHHHHhccCCeEEec
Confidence 45566677532 334667788887753 44443 3221 1113444444455788889
Q ss_pred cCchhh---hhccccCCceeeecC----CchhHHHHHcCcceeecccccchhhhHHHHHHh---hceeEeccccCCCCcc
Q 011608 345 WAPQVE---ILGHASVGGFLSHCG----WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEE---LGVAVRPNEMPTENLV 414 (481)
Q Consensus 345 ~~pq~~---lL~~~~~~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~---~G~g~~~~~~~~~~~~ 414 (481)
|+|+.+ ++..++ +||.-.. .+++.||+++|+|+|+.... .....+ ++ -+.|..++. -
T Consensus 319 ~v~~~ev~~~~~~aD--v~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~~------~ 385 (465)
T PLN02871 319 MLQGDELSQAYASGD--VFVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYTP------G 385 (465)
T ss_pred cCCHHHHHHHHHHCC--EEEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeCC------C
Confidence 998654 666666 6774332 34788999999999987643 233343 44 577877653 3
Q ss_pred CHHHHHHHHHHHhcCCc-hHHHHHHHHH
Q 011608 415 KREEIEMMVRRILVDKE-GQALRSRVKE 441 (481)
Q Consensus 415 ~~~~l~~al~~vl~~~~-~~~~r~~a~~ 441 (481)
+.+++.++|.++++|+. ...+.+++++
T Consensus 386 d~~~la~~i~~ll~~~~~~~~~~~~a~~ 413 (465)
T PLN02871 386 DVDDCVEKLETLLADPELRERMGAAARE 413 (465)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 78999999999998754 2334444444
No 47
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=2.5e-08 Score=89.62 Aligned_cols=292 Identities=20% Similarity=0.224 Sum_probs=176.8
Q ss_pred cEEEEEcCC----CccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCcc
Q 011608 6 THIALLASP----GMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADAS 81 (481)
Q Consensus 6 ~~vvl~~~p----~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 81 (481)
|||++++-+ +.||+...+.||++|.++ |..++|++.....+.... .. .++. ... ..+.+
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~-~~~~~fl~k~~~e~~~~~----~~--~~f~--------~~~--~~~~n 63 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKR-GFACLFLTKQDIEAIIHK----VY--EGFK--------VLE--GRGNN 63 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhc-CceEEEecccchhhhhhh----hh--hhcc--------cee--eeccc
Confidence 688888876 459999999999999999 999999998843331000 00 0000 000 00000
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHH---HHHHHhCCceEEEechhHHHHHHHhhcccchhhhhcc
Q 011608 82 IVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAF---QIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEE 158 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~---~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (481)
.|++. ++|++|.|.....+- .+..+.+.|.+++-.-....+- +
T Consensus 64 ------------------~ik~~--k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~----------d---- 109 (318)
T COG3980 64 ------------------LIKEE--KFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFK----------D---- 109 (318)
T ss_pred ------------------ccccc--cCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchh----------h----
Confidence 56666 999999998877653 4677899999886542210000 0
Q ss_pred ccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCC--eeee
Q 011608 159 HYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPP--IYPI 236 (481)
Q Consensus 159 ~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~--~~~v 236 (481)
.....+ ..... +....+ .|. .++.
T Consensus 110 ----------------------------~d~ivN----~~~~a--------~~~y~~--------------v~~k~~~~l 135 (318)
T COG3980 110 ----------------------------NDLIVN----AILNA--------NDYYGL--------------VPNKTRYYL 135 (318)
T ss_pred ----------------------------hHhhhh----hhhcc--------hhhccc--------------cCcceEEEe
Confidence 000000 00000 111111 122 5677
Q ss_pred CCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccC
Q 011608 237 GPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVG 316 (481)
Q Consensus 237 Gpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~ 316 (481)
||-...-.+. .-.+.+-..++ +..-|+|++|. +.+....-+++..+.+.++.+-+++++..+
T Consensus 136 Gp~y~~lr~e----F~~~r~~~~~r-~~r~ilI~lGG--sDpk~lt~kvl~~L~~~~~nl~iV~gs~~p----------- 197 (318)
T COG3980 136 GPGYAPLRPE----FYALREENTER-PKRDILITLGG--SDPKNLTLKVLAELEQKNVNLHIVVGSSNP----------- 197 (318)
T ss_pred cCCceeccHH----HHHhHHHHhhc-chheEEEEccC--CChhhhHHHHHHHhhccCeeEEEEecCCCc-----------
Confidence 7754321111 00111111122 22259999984 444445778899998888777777753311
Q ss_pred CCCCCCCCCCCchhHHhhhc-CCCccccccCc-hhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHHH
Q 011608 317 DGSSDGTPDYLPDGFLTRNA-KMGLVVPDWAP-QVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATM 394 (481)
Q Consensus 317 ~~~~~~~~~~lp~~~~~~~~-~~~~~v~~~~p-q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~ 394 (481)
.+ ....++.+ .+++...-... ...|+..++ +.|+-+|. |+.|++.-|+|.+++|+...|--.|..
T Consensus 198 ---------~l-~~l~k~~~~~~~i~~~~~~~dma~LMke~d--~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~ 264 (318)
T COG3980 198 ---------TL-KNLRKRAEKYPNINLYIDTNDMAELMKEAD--LAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKE 264 (318)
T ss_pred ---------ch-hHHHHHHhhCCCeeeEecchhHHHHHHhcc--hheeccch-HHHHHHHhcCCceEEeeeccHHHHHHH
Confidence 11 22333332 23444433334 456888888 89999987 999999999999999999999999999
Q ss_pred HHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 011608 395 LAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKEL 442 (481)
Q Consensus 395 v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l 442 (481)
. +.+|+-..+.- +++.+....-+.++.+|.. .|++...-
T Consensus 265 f-~~lg~~~~l~~-----~l~~~~~~~~~~~i~~d~~---~rk~l~~~ 303 (318)
T COG3980 265 F-EALGIIKQLGY-----HLKDLAKDYEILQIQKDYA---RRKNLSFG 303 (318)
T ss_pred H-HhcCchhhccC-----CCchHHHHHHHHHhhhCHH---Hhhhhhhc
Confidence 9 69999888762 3677777777778888875 55554433
No 48
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.05 E-value=6.6e-07 Score=89.39 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=59.8
Q ss_pred CCccccccCchhh---hhccccCCceeee----cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 338 MGLVVPDWAPQVE---ILGHASVGGFLSH----CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 338 ~~~~v~~~~pq~~---lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
.++.+.+|+|+.+ ++..++ ++++. |--.++.||+++|+|+|+....+ ....+ ++.+.|...+.
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~ad--i~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i-~~~~~g~~~~~--- 352 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAAD--VFVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIV-VDGVTGLLVDP--- 352 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCC--EEEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHc-cCCCCeEEeCC---
Confidence 4788889999765 477777 66643 22358999999999999876543 44455 56678887652
Q ss_pred CCccCHHHHHHHHHHHhcCCc
Q 011608 411 ENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~~ 431 (481)
-+.+++.++|.+++.++.
T Consensus 353 ---~~~~~l~~~i~~l~~~~~ 370 (398)
T cd03800 353 ---RDPEALAAALRRLLTDPA 370 (398)
T ss_pred ---CCHHHHHHHHHHHHhCHH
Confidence 379999999999998754
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.00 E-value=6.2e-07 Score=87.74 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=58.4
Q ss_pred CCccccccCchhh---hhccccCCceee----ecCC-chhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccC
Q 011608 338 MGLVVPDWAPQVE---ILGHASVGGFLS----HCGW-NSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMP 409 (481)
Q Consensus 338 ~~~~v~~~~pq~~---lL~~~~~~~~I~----HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 409 (481)
.++.+.+|+++.+ ++..++ ++|+ ..|+ .++.||+++|+|+|+.+. ......+ ++.+.|...+.
T Consensus 243 ~~v~~~g~~~~~~~~~~~~~ad--~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~-- 313 (359)
T cd03823 243 PRVEFLGAYPQEEIDDFYAEID--VLVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFPP-- 313 (359)
T ss_pred CeEEEeCCCCHHHHHHHHHhCC--EEEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEECC--
Confidence 4788889997654 577777 5663 2344 478999999999998654 3455555 45556777642
Q ss_pred CCCccCHHHHHHHHHHHhcCCc
Q 011608 410 TENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 410 ~~~~~~~~~l~~al~~vl~~~~ 431 (481)
-+.+++.+++.++++|+.
T Consensus 314 ----~d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 314 ----GDAEDLAAALERLIDDPD 331 (359)
T ss_pred ----CCHHHHHHHHHHHHhChH
Confidence 368999999999998754
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.97 E-value=7e-07 Score=88.19 Aligned_cols=92 Identities=16% Similarity=0.133 Sum_probs=61.8
Q ss_pred CCCccccccCchhh---hhccccCCceeeecC---------CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEe
Q 011608 337 KMGLVVPDWAPQVE---ILGHASVGGFLSHCG---------WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVR 404 (481)
Q Consensus 337 ~~~~~v~~~~pq~~---lL~~~~~~~~I~HgG---------~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~ 404 (481)
..++.+.+++++.+ ++..++ ++|.... -+++.||+++|+|+|+.+..+.+... ...+.|..
T Consensus 274 ~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~-----~~~~~g~~ 346 (394)
T cd03794 274 LDNVTFLGRVPKEELPELLAAAD--VGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV-----EEAGAGLV 346 (394)
T ss_pred CCcEEEeCCCChHHHHHHHHhhC--eeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh-----ccCCcceE
Confidence 35788888998654 566777 5554322 23479999999999998887654432 23366766
Q ss_pred ccccCCCCccCHHHHHHHHHHHhcCCc-hHHHHHHHHH
Q 011608 405 PNEMPTENLVKREEIEMMVRRILVDKE-GQALRSRVKE 441 (481)
Q Consensus 405 ~~~~~~~~~~~~~~l~~al~~vl~~~~-~~~~r~~a~~ 441 (481)
.+. -+.+++.++|.+++.|++ .+.+++++++
T Consensus 347 ~~~------~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 378 (394)
T cd03794 347 VPP------GDPEALAAAILELLDDPEERAEMGENGRR 378 (394)
T ss_pred eCC------CCHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 542 378999999999997755 2334444443
No 51
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.96 E-value=2.8e-06 Score=85.49 Aligned_cols=94 Identities=12% Similarity=0.086 Sum_probs=62.1
Q ss_pred CCccccccCchh---hhhccccCCceeeecCC------chhHHHHHcCcceeecccccchhhhHHHHHHhhceeEecccc
Q 011608 338 MGLVVPDWAPQV---EILGHASVGGFLSHCGW------NSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEM 408 (481)
Q Consensus 338 ~~~~v~~~~pq~---~lL~~~~~~~~I~HgG~------~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~ 408 (481)
.++.+.+|+|+. +++..+++.++.+..+. +.+.|++++|+|+|+....+. .....+ + +.|+.++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCC-
Confidence 368888999865 46778886555555332 236899999999999875432 112233 3 67777642
Q ss_pred CCCCccCHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Q 011608 409 PTENLVKREEIEMMVRRILVDKE-GQALRSRVKEL 442 (481)
Q Consensus 409 ~~~~~~~~~~l~~al~~vl~~~~-~~~~r~~a~~l 442 (481)
-+.++++++|.+++.|+. .+.+++++++.
T Consensus 358 -----~d~~~la~~i~~l~~~~~~~~~~~~~a~~~ 387 (412)
T PRK10307 358 -----ESVEALVAAIAALARQALLRPKLGTVAREY 387 (412)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 378999999999997754 23344544443
No 52
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.93 E-value=3.6e-06 Score=84.72 Aligned_cols=122 Identities=9% Similarity=0.035 Sum_probs=69.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHH
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIV 83 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (481)
.+-||++++....|+-.-+..+|+.|+++ ||+|++++....... .. ... ..++.++.++.... .. .......
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~-G~~V~ii~~~~~~~~-~~-~~~---~~~v~~~~~~~~~~-~~-~~~~~~~ 73 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKH-GWKVDLVGYLETPPH-DE-ILS---NPNITIHPLPPPPQ-RL-NKLPFLL 73 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhc-CceEEEEEecCCCCC-HH-Hhc---CCCEEEEECCCCcc-cc-ccchHHH
Confidence 45688888888888888889999999999 999999987632211 00 011 13677777754320 00 0001111
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcC-CCc---h-HHHHHHHhCCceEEEe
Q 011608 84 IKIIFMMRESLPALRSSISTLKPRPTALFADL-FGT---E-AFQIADEFEMLKYVYI 135 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~-~~~---~-~~~~A~~~giP~v~~~ 135 (481)
..+..........+..+++.. +||+|++.. ... . +..+++..++|+|..+
T Consensus 74 ~~~~~~~~~~~~~~~~l~~~~--~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~ 128 (415)
T cd03816 74 FAPLKVLWQFFSLLWLLYKLR--PADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDW 128 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEc
Confidence 111122222223334445554 899998642 221 1 3345666799987643
No 53
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.89 E-value=7.7e-08 Score=95.07 Aligned_cols=133 Identities=16% Similarity=0.090 Sum_probs=84.3
Q ss_pred CCcEEEEEeCCCCCC-ChHHHHHHHHHHHhCCC-cEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhh---hc-
Q 011608 263 TESVIYVSFGGGGTL-SANQMIEVAWGLELSQQ-RFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTR---NA- 336 (481)
Q Consensus 263 ~~~vv~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~---~~- 336 (481)
++++|++++|..... ....+..++++++.... ++.++...+.. .-+.+.+. ..
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~---------------------~~~~l~~~~~~~~~ 255 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR---------------------TRPRIREAGLEFLG 255 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC---------------------hHHHHHHHHHhhcc
Confidence 345788888876543 34557888888877543 24444422211 00222222 21
Q ss_pred -CCCccccccCchh---hhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCC
Q 011608 337 -KMGLVVPDWAPQV---EILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTEN 412 (481)
Q Consensus 337 -~~~~~v~~~~pq~---~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 412 (481)
..++.+.+..++. .++..++ +||+-.| |.+.||+++|+|+|+++.. |. +..+ .+.|+++.+. .
T Consensus 256 ~~~~v~~~~~~~~~~~~~l~~~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~-~~~g~~~~~~-----~ 322 (363)
T cd03786 256 HHPNVLLISPLGYLYFLLLLKNAD--LVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPET-VESGTNVLVG-----T 322 (363)
T ss_pred CCCCEEEECCcCHHHHHHHHHcCc--EEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchh-hheeeEEecC-----C
Confidence 2466665555443 4565666 8999999 7888999999999998743 32 3344 3678776653 2
Q ss_pred ccCHHHHHHHHHHHhcCCc
Q 011608 413 LVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 413 ~~~~~~l~~al~~vl~~~~ 431 (481)
+.++|.++|.++++++.
T Consensus 323 --~~~~i~~~i~~ll~~~~ 339 (363)
T cd03786 323 --DPEAILAAIEKLLSDEF 339 (363)
T ss_pred --CHHHHHHHHHHHhcCch
Confidence 58999999999998764
No 54
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.89 E-value=2.8e-07 Score=91.17 Aligned_cols=318 Identities=12% Similarity=0.101 Sum_probs=161.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIK 85 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 85 (481)
|+|+++. +++.|+.=+.++.++|.++.+.++.++.+....+.+...+..+...+.+.+ .+.. .+.+.
T Consensus 1 ~~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~-~~~~--------~~~~~--- 67 (365)
T TIGR00236 1 LKVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDL-NIMS--------PGQTL--- 67 (365)
T ss_pred CeEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeee-ecCC--------CCCCH---
Confidence 4677766 899999999999999997645677777766443332221222221111111 1110 11112
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCcEEEE--cCCC-chHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccCC
Q 011608 86 IIFMMRESLPALRSSISTLKPRPTALFA--DLFG-TEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGR 162 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~D~VI~--D~~~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (481)
..........+.+.+++. +||+|++ |... ..+..+|..+|||++-+...- . +
T Consensus 68 -~~~~~~~~~~l~~~l~~~--~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~----------~----------s-- 122 (365)
T TIGR00236 68 -GEITSNMLEGLEELLLEE--KPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL----------R----------T-- 122 (365)
T ss_pred -HHHHHHHHHHHHHHHHHc--CCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC----------C----------c--
Confidence 222333346777888888 9999985 4433 335678999999987532210 0 0
Q ss_pred CCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCC--CeeeeCCcc
Q 011608 163 KQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLP--PIYPIGPVV 240 (481)
Q Consensus 163 ~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p--~~~~vGpl~ 240 (481)
.....+ +++ ....... .+-++.++..| +..... +... +.+ ++..+|...
T Consensus 123 -----~~~~~~-----~~~-------~~~r~~~-----~~~ad~~~~~s-~~~~~~----l~~~--G~~~~~I~vign~~ 173 (365)
T TIGR00236 123 -----GDRYSP-----MPE-------EINRQLT-----GHIADLHFAPT-EQAKDN----LLRE--NVKADSIFVTGNTV 173 (365)
T ss_pred -----CCCCCC-----Ccc-------HHHHHHH-----HHHHHhccCCC-HHHHHH----HHHc--CCCcccEEEeCChH
Confidence 000000 000 0000000 00122222222 211111 1111 122 378888654
Q ss_pred cCC----CCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCCCc
Q 011608 241 RSM----GSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS-----QQRFIWVVRPPMDNDVSGS 311 (481)
Q Consensus 241 ~~~----~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~ 311 (481)
.+. ... ....++.+-+. .++.+++++++-.... ...+..+++++..+ +.++++....+.
T Consensus 174 ~d~~~~~~~~--~~~~~~~~~~~--~~~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~------- 241 (365)
T TIGR00236 174 IDALLTNVEI--AYSSPVLSEFG--EDKRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNP------- 241 (365)
T ss_pred HHHHHHHHhh--ccchhHHHhcC--CCCCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCCh-------
Confidence 211 000 01122222222 1234676665432121 13466777777653 345555432110
Q ss_pred ccccCCCCCCCCCCCCchhHHhhhc-CCCccccccCchh---hhhccccCCceeeecCCchhHHHHHcCcceeecccccc
Q 011608 312 FFKVGDGSSDGTPDYLPDGFLTRNA-KMGLVVPDWAPQV---EILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAE 387 (481)
Q Consensus 312 ~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~v~~~~pq~---~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~D 387 (481)
..-..+.+..+ .+++.+.+.+++. .++.+++ ++|+-.|. .+.||+++|+|+|.++-.++
T Consensus 242 --------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad--~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~ 304 (365)
T TIGR00236 242 --------------VVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSH--LILTDSGG-VQEEAPSLGKPVLVLRDTTE 304 (365)
T ss_pred --------------HHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCC--EEEECChh-HHHHHHHcCCCEEECCCCCC
Confidence 00011222222 2367766666543 5566766 78887764 47999999999999976665
Q ss_pred hhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 388 QKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 388 Q~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
++. +. ..|.+..+. -++++|.+++.+++.|+.
T Consensus 305 ~~e----~~-~~g~~~lv~-------~d~~~i~~ai~~ll~~~~ 336 (365)
T TIGR00236 305 RPE----TV-EAGTNKLVG-------TDKENITKAAKRLLTDPD 336 (365)
T ss_pred ChH----HH-hcCceEEeC-------CCHHHHHHHHHHHHhChH
Confidence 552 22 357666543 278999999999998765
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.89 E-value=2.5e-06 Score=83.86 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=61.6
Q ss_pred CCccccccCchhh---hhccccCCceeee----cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 338 MGLVVPDWAPQVE---ILGHASVGGFLSH----CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 338 ~~~~v~~~~pq~~---lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
.++.+.+++|+.+ ++..++ ++|.- +..+++.||+++|+|+|+... ...+..+ ++.+.|..++.
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad--~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~--- 328 (374)
T cd03817 259 DRVIFTGFVPREELPDYYKAAD--LFVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPP--- 328 (374)
T ss_pred CcEEEeccCChHHHHHHHHHcC--EEEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCC---
Confidence 4788889998754 577777 55533 334689999999999998654 3445555 56577777652
Q ss_pred CCccCHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Q 011608 411 ENLVKREEIEMMVRRILVDKE-GQALRSRVKELK 443 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~~-~~~~r~~a~~l~ 443 (481)
. +. ++.+++.++++++. .+.+++++++..
T Consensus 329 -~--~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~ 358 (374)
T cd03817 329 -G--DE-ALAEALLRLLQDPELRRRLSKNAEESA 358 (374)
T ss_pred -C--CH-HHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 2 22 89999999998754 223444444333
No 56
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.88 E-value=3.8e-06 Score=84.96 Aligned_cols=73 Identities=25% Similarity=0.296 Sum_probs=55.0
Q ss_pred hhhhccccCCceee--e--cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHH
Q 011608 349 VEILGHASVGGFLS--H--CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVR 424 (481)
Q Consensus 349 ~~lL~~~~~~~~I~--H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~ 424 (481)
..++..+++ +|+. . +|..++.||+++|+|+|+-|..+++......+ ++.|+++... +.+++.++|.
T Consensus 314 ~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~~--------d~~~La~~l~ 383 (425)
T PRK05749 314 GLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQVE--------DAEDLAKAVT 383 (425)
T ss_pred HHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEEC--------CHHHHHHHHH
Confidence 456677773 2442 1 34446999999999999999988888887776 4667776642 6899999999
Q ss_pred HHhcCCc
Q 011608 425 RILVDKE 431 (481)
Q Consensus 425 ~vl~~~~ 431 (481)
++++|++
T Consensus 384 ~ll~~~~ 390 (425)
T PRK05749 384 YLLTDPD 390 (425)
T ss_pred HHhcCHH
Confidence 9998765
No 57
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.86 E-value=2.5e-06 Score=84.35 Aligned_cols=91 Identities=16% Similarity=0.114 Sum_probs=60.3
Q ss_pred CccccccCch-hhhhccccCCceee----ecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCc
Q 011608 339 GLVVPDWAPQ-VEILGHASVGGFLS----HCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENL 413 (481)
Q Consensus 339 ~~~v~~~~pq-~~lL~~~~~~~~I~----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 413 (481)
++.+.++.++ ..++..++ ++|. -|.-.++.||+++|+|+|+... ......+ ++-..|...+.
T Consensus 254 ~v~~~g~~~~~~~~~~~~d--~~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i-~~~~~G~~~~~------ 320 (371)
T cd04962 254 DVLFLGKQDHVEELLSIAD--LFLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVV-KHGETGFLVDV------ 320 (371)
T ss_pred eEEEecCcccHHHHHHhcC--EEEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhh-cCCCceEEcCC------
Confidence 5666677765 45777777 5552 2334599999999999998544 3455554 45456766542
Q ss_pred cCHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Q 011608 414 VKREEIEMMVRRILVDKE-GQALRSRVKEL 442 (481)
Q Consensus 414 ~~~~~l~~al~~vl~~~~-~~~~r~~a~~l 442 (481)
-+.+++.+++.+++.|+. ...+++++++.
T Consensus 321 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 321 GDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 378999999999998754 23344444443
No 58
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.82 E-value=1.2e-05 Score=80.40 Aligned_cols=81 Identities=11% Similarity=0.045 Sum_probs=57.5
Q ss_pred CCccccccCchhh---hhccccCCcee--e-ecCC-chhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 338 MGLVVPDWAPQVE---ILGHASVGGFL--S-HCGW-NSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 338 ~~~~v~~~~pq~~---lL~~~~~~~~I--~-HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
.++.+.+++|+.+ ++..++ ++| + +.|. .++.||+++|+|+|+.. .......+ ++-..|..++.
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~ad--v~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i-~~~~~G~lv~~--- 350 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSD--VHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVI-TDGENGLLVDF--- 350 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCc--EEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhc-ccCCceEEcCC---
Confidence 4788889999765 566677 454 2 2333 48999999999999864 34455555 44456776642
Q ss_pred CCccCHHHHHHHHHHHhcCCc
Q 011608 411 ENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~~ 431 (481)
-++++++++|.+++.|++
T Consensus 351 ---~d~~~la~~i~~ll~~~~ 368 (396)
T cd03818 351 ---FDPDALAAAVIELLDDPA 368 (396)
T ss_pred ---CCHHHHHHHHHHHHhCHH
Confidence 379999999999998864
No 59
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.81 E-value=2.5e-06 Score=83.68 Aligned_cols=141 Identities=13% Similarity=0.031 Sum_probs=85.5
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCC-CcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhh----cCCCc
Q 011608 266 VIYVSFGGGGTLSANQMIEVAWGLELSQ-QRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRN----AKMGL 340 (481)
Q Consensus 266 vv~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~----~~~~~ 340 (481)
.+++..|+... ......+++++++.. .++++.- .+ .....+.+.. ...++
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G-~g----------------------~~~~~~~~~~~~~~~~~~V 246 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVG-EG----------------------PLEAELEALAAALGLLDRV 246 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEe-CC----------------------hhHHHHHHHHHhcCCcceE
Confidence 56677787532 334667788887776 3433332 11 1112222211 23488
Q ss_pred cccccCchh---hhhccccCCceee---ecCCc-hhHHHHHcCcceeecccccchhhhHHHHHHh-hceeEeccccCCCC
Q 011608 341 VVPDWAPQV---EILGHASVGGFLS---HCGWN-STLESIVNGVPLIVWPLYAEQKMNATMLAEE-LGVAVRPNEMPTEN 412 (481)
Q Consensus 341 ~v~~~~pq~---~lL~~~~~~~~I~---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~-~G~g~~~~~~~~~~ 412 (481)
.+.+|+|+. .++..+++.++-+ +.|+| ++.||+++|+|+|+....+.+. .+ +. -+.|...+
T Consensus 247 ~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i-~~~~~~g~~~~------ 315 (357)
T cd03795 247 RFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YV-NLHGVTGLVVP------ 315 (357)
T ss_pred EEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HH-hhCCCceEEeC------
Confidence 889999975 4666677433333 23444 7999999999999976555443 33 22 45666653
Q ss_pred ccCHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Q 011608 413 LVKREEIEMMVRRILVDKE-GQALRSRVKEL 442 (481)
Q Consensus 413 ~~~~~~l~~al~~vl~~~~-~~~~r~~a~~l 442 (481)
.-+.+++.++|.++++|++ .+.+++++++.
T Consensus 316 ~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 346 (357)
T cd03795 316 PGDPAALAEAIRRLLEDPELRERLGEAARER 346 (357)
T ss_pred CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 2379999999999998864 33445444443
No 60
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.80 E-value=1.4e-05 Score=77.85 Aligned_cols=81 Identities=16% Similarity=0.100 Sum_probs=56.7
Q ss_pred CCccccccCch-hhhhccccCCceeeec----CCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCC
Q 011608 338 MGLVVPDWAPQ-VEILGHASVGGFLSHC----GWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTEN 412 (481)
Q Consensus 338 ~~~~v~~~~pq-~~lL~~~~~~~~I~Hg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 412 (481)
.++...++..+ ..++..++ ++|.-. --+++.||+++|+|+|+-+..+ ....+ ++.+.|...+.
T Consensus 246 ~~v~~~g~~~~~~~~~~~ad--i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i-~~~~~g~~~~~----- 313 (359)
T cd03808 246 GRVEFLGFRDDVPELLAAAD--VFVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAV-IDGVNGFLVPP----- 313 (359)
T ss_pred ceEEEeeccccHHHHHHhcc--EEEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhh-hcCcceEEECC-----
Confidence 35666676543 55777777 566433 2568999999999999865443 34454 45667776642
Q ss_pred ccCHHHHHHHHHHHhcCCc
Q 011608 413 LVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 413 ~~~~~~l~~al~~vl~~~~ 431 (481)
-+.+++.++|.+++.|++
T Consensus 314 -~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 314 -GDAEALADAIERLIEDPE 331 (359)
T ss_pred -CCHHHHHHHHHHHHhCHH
Confidence 378999999999998765
No 61
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.79 E-value=5.1e-05 Score=76.16 Aligned_cols=81 Identities=10% Similarity=0.006 Sum_probs=58.0
Q ss_pred CCccccccCchh---hhhccccCCceee---ecC-CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 338 MGLVVPDWAPQV---EILGHASVGGFLS---HCG-WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 338 ~~~~v~~~~pq~---~lL~~~~~~~~I~---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
.++.+.+++|+. +++..++ ++|. +-| ..++.||+++|+|+|+.... .....+ ++-+.|..++.
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad--~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~~--- 352 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAAD--VVAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAV-ADGETGLLVDG--- 352 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCC--EEEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhh-ccCCceEECCC---
Confidence 368888998864 4687877 5553 233 35899999999999986543 344454 45567776642
Q ss_pred CCccCHHHHHHHHHHHhcCCc
Q 011608 411 ENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~~ 431 (481)
-+.++++++|.+++.++.
T Consensus 353 ---~d~~~la~~i~~~l~~~~ 370 (405)
T TIGR03449 353 ---HDPADWADALARLLDDPR 370 (405)
T ss_pred ---CCHHHHHHHHHHHHhCHH
Confidence 378999999999998754
No 62
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.78 E-value=9.3e-06 Score=79.26 Aligned_cols=82 Identities=16% Similarity=0.160 Sum_probs=60.3
Q ss_pred CCCccccccCchh---hhhccccCCceee----ecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccC
Q 011608 337 KMGLVVPDWAPQV---EILGHASVGGFLS----HCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMP 409 (481)
Q Consensus 337 ~~~~~v~~~~pq~---~lL~~~~~~~~I~----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 409 (481)
..++.+.+++++. .++..++ ++|. -|..+++.||+++|+|+|+.+. ......+ +..+.|...+.
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~~~-- 325 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAAD--VFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLVPP-- 325 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcC--EEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEeCC--
Confidence 3478888999754 4677777 5553 3556799999999999998766 3455555 45677777642
Q ss_pred CCCccCHHHHHHHHHHHhcCCc
Q 011608 410 TENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 410 ~~~~~~~~~l~~al~~vl~~~~ 431 (481)
.+.+++.++|.+++.|+.
T Consensus 326 ----~~~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 326 ----GDPEALAEAILRLLDDPE 343 (374)
T ss_pred ----CCHHHHHHHHHHHHcChH
Confidence 368999999999998865
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.78 E-value=1.7e-05 Score=77.63 Aligned_cols=81 Identities=14% Similarity=0.069 Sum_probs=58.8
Q ss_pred CCccccccCchh---hhhccccCCcee----eecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 338 MGLVVPDWAPQV---EILGHASVGGFL----SHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 338 ~~~~v~~~~pq~---~lL~~~~~~~~I----~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
.++.+.+++++. .++..++ ++| +-|.-+++.||+++|+|+|+-+.. .....+ +..+.|...+
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad--~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~-~~~~~g~~~~---- 327 (377)
T cd03798 259 DRVTFLGAVPHEEVPAYYAAAD--VFVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEII-TDGENGLLVP---- 327 (377)
T ss_pred ceEEEeCCCCHHHHHHHHHhcC--eeecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHh-cCCcceeEEC----
Confidence 478888999875 4566666 454 224567899999999999986543 344455 4666676654
Q ss_pred CCccCHHHHHHHHHHHhcCCc
Q 011608 411 ENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~~ 431 (481)
.-+.+++.++|.+++.+..
T Consensus 328 --~~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 328 --PGDPEALAEAILRLLADPW 346 (377)
T ss_pred --CCCHHHHHHHHHHHhcCcH
Confidence 3489999999999998765
No 64
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.67 E-value=2.3e-05 Score=75.98 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=54.5
Q ss_pred CccccccCc-hhhhhccccCCceeeec----CCchhHHHHHcCcceeecccccchhhhHHHHHHhhc-eeEeccccCCCC
Q 011608 339 GLVVPDWAP-QVEILGHASVGGFLSHC----GWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELG-VAVRPNEMPTEN 412 (481)
Q Consensus 339 ~~~v~~~~p-q~~lL~~~~~~~~I~Hg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~g~~~~~~~~~~ 412 (481)
++.+.++.. -..++..++ ++|.-. .-+++.||+++|+|+|+.+..+.+. .+. ..| .|...+
T Consensus 236 ~v~~~g~~~~~~~~~~~ad--~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~-~~~~~g~~~~------ 302 (348)
T cd03820 236 RVILLGFTKNIEEYYAKAS--IFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EII-EDGVNGLLVP------ 302 (348)
T ss_pred eEEEcCCcchHHHHHHhCC--EEEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhh-ccCcceEEeC------
Confidence 555656633 356777777 555443 2468999999999999876554433 232 334 776654
Q ss_pred ccCHHHHHHHHHHHhcCCc
Q 011608 413 LVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 413 ~~~~~~l~~al~~vl~~~~ 431 (481)
.-+.+++.++|.+++.|++
T Consensus 303 ~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 303 NGDVEALAEALLRLMEDEE 321 (348)
T ss_pred CCCHHHHHHHHHHHHcCHH
Confidence 2468999999999998865
No 65
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.64 E-value=5.4e-05 Score=74.45 Aligned_cols=80 Identities=13% Similarity=0.107 Sum_probs=56.0
Q ss_pred CccccccCc-hh---hhhccccCCceeeec----CCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 339 GLVVPDWAP-QV---EILGHASVGGFLSHC----GWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 339 ~~~v~~~~p-q~---~lL~~~~~~~~I~Hg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
++...+|++ +. .++..++ ++|.-. ..+++.||+++|+|+|+.... .....+ .+.+.|..++
T Consensus 245 ~v~~~g~~~~~~~~~~~~~~ad--~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~~---- 313 (365)
T cd03825 245 PVHYLGSLNDDESLALIYSAAD--VFVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLAK---- 313 (365)
T ss_pred ceEecCCcCCHHHHHHHHHhCC--EEEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEeC----
Confidence 577779988 43 4577777 666643 347999999999999986543 233344 3445666654
Q ss_pred CCccCHHHHHHHHHHHhcCCc
Q 011608 411 ENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~~ 431 (481)
..+.+++.+++.+++.+++
T Consensus 314 --~~~~~~~~~~l~~l~~~~~ 332 (365)
T cd03825 314 --PGDPEDLAEGIEWLLADPD 332 (365)
T ss_pred --CCCHHHHHHHHHHHHhCHH
Confidence 2478999999999998764
No 66
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.60 E-value=7.6e-05 Score=73.16 Aligned_cols=92 Identities=15% Similarity=0.072 Sum_probs=60.3
Q ss_pred CCccccccCchhh---hhccccCCceeee--cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCC
Q 011608 338 MGLVVPDWAPQVE---ILGHASVGGFLSH--CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTEN 412 (481)
Q Consensus 338 ~~~~v~~~~pq~~---lL~~~~~~~~I~H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 412 (481)
.++.+.+|+++.+ ++..+++-++-++ |-.+++.||+++|+|+|+.+. ......+ .. +.|...+
T Consensus 262 ~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~------ 329 (375)
T cd03821 262 DRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVD------ 329 (375)
T ss_pred ceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeC------
Confidence 4788889999654 4677774222222 224689999999999999653 3445555 45 7787754
Q ss_pred ccCHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Q 011608 413 LVKREEIEMMVRRILVDKE-GQALRSRVKEL 442 (481)
Q Consensus 413 ~~~~~~l~~al~~vl~~~~-~~~~r~~a~~l 442 (481)
.+.+++.++|.+++.+++ .+.+.+++++.
T Consensus 330 -~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 330 -DDVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred -CChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 245999999999998754 23344444433
No 67
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.57 E-value=0.00018 Score=71.75 Aligned_cols=91 Identities=12% Similarity=0.050 Sum_probs=61.4
Q ss_pred CCccccccCchh---hhhccccCCceeee---cC-CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 338 MGLVVPDWAPQV---EILGHASVGGFLSH---CG-WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 338 ~~~~v~~~~pq~---~lL~~~~~~~~I~H---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
+++.+.+++|+. .++..++ +++.. -| ..++.||+++|+|+|+.-.. .....+ ..-+.|...+
T Consensus 280 ~~V~f~g~~~~~~~~~~l~~ad--~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i-~~~~~g~~~~---- 348 (392)
T cd03805 280 DQVIFLPSISDSQKELLLSSAR--ALLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETV-VDGETGFLCE---- 348 (392)
T ss_pred ceEEEeCCCChHHHHHHHhhCe--EEEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHh-ccCCceEEeC----
Confidence 478888999876 4577777 45532 22 25789999999999997443 333445 4555676653
Q ss_pred CCccCHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Q 011608 411 ENLVKREEIEMMVRRILVDKE-GQALRSRVKEL 442 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~~-~~~~r~~a~~l 442 (481)
.+.+++.++|.+++.+++ ...+++++++.
T Consensus 349 ---~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 349 ---PTPEEFAEAMLKLANDPDLADRMGAAGRKR 378 (392)
T ss_pred ---CCHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 278999999999998764 33445555443
No 68
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.53 E-value=6.1e-05 Score=73.24 Aligned_cols=128 Identities=13% Similarity=0.031 Sum_probs=75.4
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhh--cCCCccccc
Q 011608 267 IYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRN--AKMGLVVPD 344 (481)
Q Consensus 267 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~v~~ 344 (481)
+.+..|... .......+++++++.+.++++.-..... ..+ ....... ..+++.+.+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~-------------------~~~-~~~~~~~~~~~~~v~~~G 230 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDP-------------------DYF-YREIAPELLDGPDIEYLG 230 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCH-------------------HHH-HHHHHHhcccCCcEEEeC
Confidence 445556652 2334667778888887776654221100 000 1111111 135788889
Q ss_pred cCchhh---hhccccCCceee--ecCC-chhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHH
Q 011608 345 WAPQVE---ILGHASVGGFLS--HCGW-NSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREE 418 (481)
Q Consensus 345 ~~pq~~---lL~~~~~~~~I~--HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~ 418 (481)
++++.+ +++.+++-++-+ +-|+ .++.||+++|+|+|+.... .....+ ++-..|...+ . .++
T Consensus 231 ~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~~-----~---~~~ 297 (335)
T cd03802 231 EVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLVD-----S---VEE 297 (335)
T ss_pred CCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEeC-----C---HHH
Confidence 998754 577777433323 2343 4899999999999987653 333344 3433676654 2 899
Q ss_pred HHHHHHHHhcC
Q 011608 419 IEMMVRRILVD 429 (481)
Q Consensus 419 l~~al~~vl~~ 429 (481)
+.++|.+++..
T Consensus 298 l~~~l~~l~~~ 308 (335)
T cd03802 298 LAAAVARADRL 308 (335)
T ss_pred HHHHHHHHhcc
Confidence 99999888643
No 69
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.53 E-value=0.00019 Score=69.31 Aligned_cols=322 Identities=15% Similarity=0.147 Sum_probs=174.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCc-hhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHH
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDT-STVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIK 85 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 85 (481)
.+-+-..+.|-++-.++|.++|.++. ++.+++-+..+.. +.+.+.+.. .+...-+|- +.
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~-----~v~h~YlP~----D~---------- 111 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGD-----SVIHQYLPL----DL---------- 111 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCC-----CeEEEecCc----Cc----------
Confidence 45555678899999999999999985 5677666633332 332222222 122222321 11
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCcEEE-EcCCCchHH-HHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccCCC
Q 011608 86 IIFMMRESLPALRSSISTLKPRPTALF-ADLFGTEAF-QIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGRK 163 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~D~VI-~D~~~~~~~-~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 163 (481)
...+...++.+ +||++| .+.=.+... .-+++.|+|.+.+..=
T Consensus 112 --------~~~v~rFl~~~--~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR-------------------------- 155 (419)
T COG1519 112 --------PIAVRRFLRKW--RPKLLIIMETELWPNLINELKRRGIPLVLVNAR-------------------------- 155 (419)
T ss_pred --------hHHHHHHHHhc--CCCEEEEEeccccHHHHHHHHHcCCCEEEEeee--------------------------
Confidence 12345567788 999865 555455554 6788999999885430
Q ss_pred CCccCCCCcccCcccccccccCCCchhHHHHHHHhh-hhcccceEEecChhhhcHHHHHHHHhccCCCCCeeeeCCcccC
Q 011608 164 QPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGL-EMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPIGPVVRS 242 (481)
Q Consensus 164 ~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGpl~~~ 242 (481)
+..+++. .+..+-...+ .+.+.+.++..|-.+.+.- .. .+.+++.-.|.+-.+
T Consensus 156 ----------LS~rS~~---------~y~k~~~~~~~~~~~i~li~aQse~D~~Rf-----~~--LGa~~v~v~GNlKfd 209 (419)
T COG1519 156 ----------LSDRSFA---------RYAKLKFLARLLFKNIDLILAQSEEDAQRF-----RS--LGAKPVVVTGNLKFD 209 (419)
T ss_pred ----------echhhhH---------HHHHHHHHHHHHHHhcceeeecCHHHHHHH-----Hh--cCCcceEEecceeec
Confidence 0000000 0111111111 2344566666664433321 11 244467778887544
Q ss_pred CCCCCCCCchhhhhhhccCCC-CcEEEEEeCCCCCCChHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCCcccccCCCC
Q 011608 243 MGSSHMSENSSLLEWLDMQPT-ESVIYVSFGGGGTLSANQMIEVAWGLELS--QQRFIWVVRPPMDNDVSGSFFKVGDGS 319 (481)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~-~~vv~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~ 319 (481)
-..+ +.++.....|-..-+. + .+.|..+|... ..+...+...++.+. +...||+=+-+.+
T Consensus 210 ~~~~-~~~~~~~~~~r~~l~~~r-~v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlVPRHpER-------------- 272 (419)
T COG1519 210 IEPP-PQLAAELAALRRQLGGHR-PVWVAASTHEG-EEEIILDAHQALKKQFPNLLLILVPRHPER-------------- 272 (419)
T ss_pred CCCC-hhhHHHHHHHHHhcCCCC-ceEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEecCChhh--------------
Confidence 2111 1133333333222222 3 46666666322 233345555666553 3445665322211
Q ss_pred CCCCCCCCchhHHhhhcCC-----------------CccccccCch-hhhhccccC----CceeeecCCchhHHHHHcCc
Q 011608 320 SDGTPDYLPDGFLTRNAKM-----------------GLVVPDWAPQ-VEILGHASV----GGFLSHCGWNSTLESIVNGV 377 (481)
Q Consensus 320 ~~~~~~~lp~~~~~~~~~~-----------------~~~v~~~~pq-~~lL~~~~~----~~~I~HgG~~s~~eal~~Gv 377 (481)
.+ ...+..+.. ++++.|-+-- ..++.-+++ |-++-+||+| ..|++++|+
T Consensus 273 -------f~-~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~ 343 (419)
T COG1519 273 -------FK-AVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGT 343 (419)
T ss_pred -------HH-HHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCC
Confidence 10 111112222 2333333322 122222222 1256699997 789999999
Q ss_pred ceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Q 011608 378 PLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE-GQALRSRVKELKHS 445 (481)
Q Consensus 378 P~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~-~~~~r~~a~~l~~~ 445 (481)
|+|.=|+..-|.+-++++ ++.|.|+.++ +++.+.++++..++|+. .++|.+++.++-+.
T Consensus 344 pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~--------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~ 403 (419)
T COG1519 344 PVIFGPYTFNFSDIAERL-LQAGAGLQVE--------DADLLAKAVELLLADEDKREAYGRAGLEFLAQ 403 (419)
T ss_pred CEEeCCccccHHHHHHHH-HhcCCeEEEC--------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 7999999985 48889999988887754 34444444444333
No 70
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.50 E-value=0.00034 Score=67.25 Aligned_cols=295 Identities=17% Similarity=0.175 Sum_probs=155.7
Q ss_pred CCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHHHHHHh
Q 011608 14 PGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIFMMRES 93 (481)
Q Consensus 14 p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (481)
...-|+.=|.++.++|.++ ||+|.+.+-+... +..-+.. -++.+..+.... .+....+.....+
T Consensus 8 ~~p~hvhfFk~~I~eL~~~-GheV~it~R~~~~--~~~LL~~----yg~~y~~iG~~g--------~~~~~Kl~~~~~R- 71 (335)
T PF04007_consen 8 THPAHVHFFKNIIRELEKR-GHEVLITARDKDE--TEELLDL----YGIDYIVIGKHG--------DSLYGKLLESIER- 71 (335)
T ss_pred CCchHHHHHHHHHHHHHhC-CCEEEEEEeccch--HHHHHHH----cCCCeEEEcCCC--------CCHHHHHHHHHHH-
Confidence 3345999999999999999 9999999887432 1111222 267777776422 2233344443333
Q ss_pred hHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccCCCCCccCCCCcc
Q 011608 94 LPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGRKQPLMIPGCRS 173 (481)
Q Consensus 94 ~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~pg~~~ 173 (481)
...+..++++. +||++|+- .+..+..+|.-+|+|+|.|.=+....... .+.+|
T Consensus 72 ~~~l~~~~~~~--~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~--------------------~Lt~P---- 124 (335)
T PF04007_consen 72 QYKLLKLIKKF--KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQN--------------------RLTLP---- 124 (335)
T ss_pred HHHHHHHHHhh--CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccc--------------------eeehh----
Confidence 34555566667 99999963 35567789999999999976443111100 00011
Q ss_pred cCcccccccccCCCchhHHHHHHHhhhhcccceEE-ecChhhhcHHHHHHHHhccCCCCCeeeeCCcccCCCCCCCCCch
Q 011608 174 VRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGIL-INTWEDLEPTTLASLRDGISKLPPIYPIGPVVRSMGSSHMSENS 252 (481)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~s~~~l~~~~~~~~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~ 252 (481)
+.+ .+..... .-...+..+ ..+ ..+. .+.+.| ..++-|. .+++
T Consensus 125 --la~---~i~~P~~-~~~~~~~~~--G~~-~~i~~y~G~~E------------------~ayl~~F---------~Pd~ 168 (335)
T PF04007_consen 125 --LAD---VIITPEA-IPKEFLKRF--GAK-NQIRTYNGYKE------------------LAYLHPF---------KPDP 168 (335)
T ss_pred --cCC---eeECCcc-cCHHHHHhc--CCc-CCEEEECCeee------------------EEeecCC---------CCCh
Confidence 000 0000000 000000000 000 1111 222222 2233221 1233
Q ss_pred hhhhhhccCCCCcEEEEEeCCCCC----CChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCc
Q 011608 253 SLLEWLDMQPTESVIYVSFGGGGT----LSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLP 328 (481)
Q Consensus 253 ~~~~~l~~~~~~~vv~vs~GS~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 328 (481)
+..+-+.- .+.+.|++=+-+..+ .....+.++++.+++.+.. |+.+.... ..+
T Consensus 169 ~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~-vV~ipr~~---------------------~~~ 225 (335)
T PF04007_consen 169 EVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRN-VVIIPRYE---------------------DQR 225 (335)
T ss_pred hHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCce-EEEecCCc---------------------chh
Confidence 33333432 234577776665322 2334467889999888776 44443221 111
Q ss_pred hhHHhhhcCCCccc-cccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccc
Q 011608 329 DGFLTRNAKMGLVV-PDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNE 407 (481)
Q Consensus 329 ~~~~~~~~~~~~~v-~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~ 407 (481)
+-+ +.. ++.+ ..-+.-..||.+++ ++|+=|| ....||..-|+|.|.+ +.++-...-+.+. +.|+-.+
T Consensus 226 ~~~-~~~---~~~i~~~~vd~~~Ll~~a~--l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~-~~Gll~~--- 293 (335)
T PF04007_consen 226 ELF-EKY---GVIIPPEPVDGLDLLYYAD--LVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLI-EKGLLYH--- 293 (335)
T ss_pred hHH-hcc---CccccCCCCCHHHHHHhcC--EEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHH-HCCCeEe---
Confidence 111 111 2322 24445558999988 8999887 7889999999999985 3344323334453 6676333
Q ss_pred cCCCCccCHHHHHHHHHHHh
Q 011608 408 MPTENLVKREEIEMMVRRIL 427 (481)
Q Consensus 408 ~~~~~~~~~~~l~~al~~vl 427 (481)
.-+.+++.+.+.+.+
T Consensus 294 -----~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 294 -----STDPDEIVEYVRKNL 308 (335)
T ss_pred -----cCCHHHHHHHHHHhh
Confidence 346777777665544
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.50 E-value=0.00024 Score=69.64 Aligned_cols=95 Identities=11% Similarity=-0.017 Sum_probs=59.1
Q ss_pred CCccccccCch-hhhhccccCCceee--ecC-CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCc
Q 011608 338 MGLVVPDWAPQ-VEILGHASVGGFLS--HCG-WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENL 413 (481)
Q Consensus 338 ~~~~v~~~~pq-~~lL~~~~~~~~I~--HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 413 (481)
.++.+.+|.+. ..++..+++.++-+ +-| .+++.||+++|+|+|+.-.. .....+ .+-+.|..++.
T Consensus 246 ~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~------ 314 (355)
T cd03819 246 DRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETV-RPGETGLLVPP------ 314 (355)
T ss_pred ceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHH-hCCCceEEeCC------
Confidence 36777788543 55777777533333 223 35999999999999986543 334444 45457776642
Q ss_pred cCHHHHHHHHHHHhc-CCc-hHHHHHHHHHHH
Q 011608 414 VKREEIEMMVRRILV-DKE-GQALRSRVKELK 443 (481)
Q Consensus 414 ~~~~~l~~al~~vl~-~~~-~~~~r~~a~~l~ 443 (481)
-+.+++.++|..++. ++. ...+++++++..
T Consensus 315 ~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~ 346 (355)
T cd03819 315 GDAEALAQALDQILSLLPEGRAKMFAKARMCV 346 (355)
T ss_pred CCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 388999999976664 332 233444444443
No 72
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.50 E-value=0.00054 Score=69.54 Aligned_cols=82 Identities=16% Similarity=0.150 Sum_probs=55.9
Q ss_pred CccccccCchhhh---hccc--cCCceeeec---C-CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccC
Q 011608 339 GLVVPDWAPQVEI---LGHA--SVGGFLSHC---G-WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMP 409 (481)
Q Consensus 339 ~~~v~~~~pq~~l---L~~~--~~~~~I~Hg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 409 (481)
++...+++++.++ +..+ +.++||.-. | -.++.||+++|+|+|+.... .....+ ++-..|..++.
T Consensus 318 ~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv-~~~~~G~lv~~-- 390 (439)
T TIGR02472 318 KVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDII-ANCRNGLLVDV-- 390 (439)
T ss_pred eEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHh-cCCCcEEEeCC--
Confidence 5666677776554 5444 224777543 3 35999999999999987653 344444 45456776643
Q ss_pred CCCccCHHHHHHHHHHHhcCCc
Q 011608 410 TENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 410 ~~~~~~~~~l~~al~~vl~~~~ 431 (481)
-+.++++++|.++++|+.
T Consensus 391 ----~d~~~la~~i~~ll~~~~ 408 (439)
T TIGR02472 391 ----LDLEAIASALEDALSDSS 408 (439)
T ss_pred ----CCHHHHHHHHHHHHhCHH
Confidence 378999999999998764
No 73
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.50 E-value=0.00013 Score=73.00 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=52.3
Q ss_pred CccccccCchh---hhhccccCCceee---ecCCc-hhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCC
Q 011608 339 GLVVPDWAPQV---EILGHASVGGFLS---HCGWN-STLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTE 411 (481)
Q Consensus 339 ~~~v~~~~pq~---~lL~~~~~~~~I~---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 411 (481)
++.+.+|+|+. .+++.++ ++|. +-|+| ++.||+++|+|+|+.+..+ ....+ ++ |.+....
T Consensus 251 ~v~~~G~~~~~~~~~~l~~ad--~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~~----- 317 (398)
T cd03796 251 RVELLGAVPHERVRDVLVQGH--IFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLAE----- 317 (398)
T ss_pred eEEEeCCCCHHHHHHHHHhCC--EEEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-CceeecC-----
Confidence 57778999864 4666676 5553 33444 9999999999999977643 22343 33 4343322
Q ss_pred CccCHHHHHHHHHHHhcCC
Q 011608 412 NLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 412 ~~~~~~~l~~al~~vl~~~ 430 (481)
. +.+++.+++.+++.+.
T Consensus 318 ~--~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 318 P--DVESIVRKLEEAISIL 334 (398)
T ss_pred C--CHHHHHHHHHHHHhCh
Confidence 2 7899999999999753
No 74
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.44 E-value=0.00024 Score=69.50 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=60.6
Q ss_pred CCccccccCchh---hhhccccCCceee--e--------cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEe
Q 011608 338 MGLVVPDWAPQV---EILGHASVGGFLS--H--------CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVR 404 (481)
Q Consensus 338 ~~~~v~~~~pq~---~lL~~~~~~~~I~--H--------gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~ 404 (481)
.++.+.+++|+. .++..++ ++|. . |.-+++.||+++|+|+|+.+..+ ....+ ++...|..
T Consensus 236 ~~v~~~g~~~~~~l~~~~~~ad--i~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~~ 308 (355)
T cd03799 236 DRVTLLGAKSQEEVRELLRAAD--LFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGLL 308 (355)
T ss_pred CeEEECCcCChHHHHHHHHhCC--EEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceEE
Confidence 478888999764 4566677 4554 2 33468999999999999866532 22343 45447777
Q ss_pred ccccCCCCccCHHHHHHHHHHHhcCCc-hHHHHHHHH
Q 011608 405 PNEMPTENLVKREEIEMMVRRILVDKE-GQALRSRVK 440 (481)
Q Consensus 405 ~~~~~~~~~~~~~~l~~al~~vl~~~~-~~~~r~~a~ 440 (481)
.+. -+.+++.++|.+++.++. ...++++++
T Consensus 309 ~~~------~~~~~l~~~i~~~~~~~~~~~~~~~~a~ 339 (355)
T cd03799 309 VPP------GDPEALADAIERLLDDPELRREMGEAGR 339 (355)
T ss_pred eCC------CCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 642 389999999999998754 233444443
No 75
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.44 E-value=8.8e-06 Score=78.74 Aligned_cols=89 Identities=19% Similarity=0.239 Sum_probs=61.3
Q ss_pred hhhhhccccCCceeeecCCchhHHHHHcCcceeecccc--cchhhhHHHHHH---hhceeEec-c-----cc-C--CCCc
Q 011608 348 QVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLY--AEQKMNATMLAE---ELGVAVRP-N-----EM-P--TENL 413 (481)
Q Consensus 348 q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~--~DQ~~na~~v~~---~~G~g~~~-~-----~~-~--~~~~ 413 (481)
-.+++..++ +.|+-.|-.|+ |+..+|+|||+ ++- .-|+.||+++ . ..|+.-.+ + .. + .+++
T Consensus 229 ~~~~m~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~vvPEllQ~~ 303 (347)
T PRK14089 229 THKALLEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEPLHPELLQEF 303 (347)
T ss_pred HHHHHHhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccccCchhhccc
Confidence 356788877 99999999888 99999999999 654 5799999998 5 44544333 1 00 0 1367
Q ss_pred cCHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 011608 414 VKREEIEMMVRRILVDKEGQALRSRVKELKHS 445 (481)
Q Consensus 414 ~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~ 445 (481)
+|++.|.+++.+ ...+. +++...++++.
T Consensus 304 ~t~~~la~~i~~-~~~~~---~~~~~~~l~~~ 331 (347)
T PRK14089 304 VTVENLLKAYKE-MDREK---FFKKSKELREY 331 (347)
T ss_pred CCHHHHHHHHHH-HHHHH---HHHHHHHHHHH
Confidence 899999999977 21122 45555555444
No 76
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.43 E-value=0.00035 Score=68.53 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=54.1
Q ss_pred Ccccc-ccCchh---hhhccccCCceee--e----cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEecccc
Q 011608 339 GLVVP-DWAPQV---EILGHASVGGFLS--H----CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEM 408 (481)
Q Consensus 339 ~~~v~-~~~pq~---~lL~~~~~~~~I~--H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~ 408 (481)
++... +|+|+. .++..++ ++|. + |..+++.||+++|+|+|+-+..+ ...+ ...+.|...+.
T Consensus 248 ~v~~~~~~~~~~~~~~~~~~ad--~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~~- 318 (366)
T cd03822 248 RVIFINRYLPDEELPELFSAAD--VVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVPP- 318 (366)
T ss_pred cEEEecCcCCHHHHHHHHhhcC--EEEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEcC-
Confidence 56555 448764 5666766 4552 2 33468899999999999977654 2334 35566766542
Q ss_pred CCCCccCHHHHHHHHHHHhcCCc
Q 011608 409 PTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 409 ~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
-+.+++.++|.++++|++
T Consensus 319 -----~d~~~~~~~l~~l~~~~~ 336 (366)
T cd03822 319 -----GDPAALAEAIRRLLADPE 336 (366)
T ss_pred -----CCHHHHHHHHHHHHcChH
Confidence 368999999999998754
No 77
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.42 E-value=0.0001 Score=72.78 Aligned_cols=131 Identities=11% Similarity=0.080 Sum_probs=77.6
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEE-EEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhh---c-CCCc
Q 011608 266 VIYVSFGGGGTLSANQMIEVAWGLELSQQRFIW-VVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRN---A-KMGL 340 (481)
Q Consensus 266 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~---~-~~~~ 340 (481)
.+++..|.........+..+++++......+-+ .++.+. .-+.+.+.. + ..++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~----------------------~~~~l~~~~~~~~l~~~v 238 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS----------------------DFEKCKAYSRELGIEQRI 238 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc----------------------cHHHHHHHHHHcCCCCeE
Confidence 466777765433344567788888775433322 232211 112232222 1 2478
Q ss_pred cccccCch--hh---hhccccCCceeee----cCCchhHHHHHcCcceeecc-cccchhhhHHHHHHhhceeEeccccCC
Q 011608 341 VVPDWAPQ--VE---ILGHASVGGFLSH----CGWNSTLESIVNGVPLIVWP-LYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 341 ~v~~~~pq--~~---lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
.+.+|+++ .. .+..++ ++|.- |--.++.||+++|+|+|+.- ..+ ....+ ++-..|..++.
T Consensus 239 ~f~G~~~~~~~~~~~~~~~~d--~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~~--- 308 (359)
T PRK09922 239 IWHGWQSQPWEVVQQKIKNVS--ALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYTP--- 308 (359)
T ss_pred EEecccCCcHHHHHHHHhcCc--EEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEECC---
Confidence 88888743 22 233445 55542 33569999999999999875 322 22234 45556766542
Q ss_pred CCccCHHHHHHHHHHHhcCCc
Q 011608 411 ENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~~ 431 (481)
-+.+++.++|.+++.|++
T Consensus 309 ---~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 309 ---GNIDEFVGKLNKVISGEV 326 (359)
T ss_pred ---CCHHHHHHHHHHHHhCcc
Confidence 389999999999999875
No 78
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.41 E-value=0.00019 Score=70.78 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=59.2
Q ss_pred CCccccccCchhh---hhccccCCceeee----------cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEe
Q 011608 338 MGLVVPDWAPQVE---ILGHASVGGFLSH----------CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVR 404 (481)
Q Consensus 338 ~~~~v~~~~pq~~---lL~~~~~~~~I~H----------gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~ 404 (481)
.++.+.+++|+.+ ++..++ ++|.- |--+++.||+++|+|+|+-+..+ +...+ ++.+.|..
T Consensus 245 ~~v~~~g~~~~~~l~~~~~~ad--~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i-~~~~~g~~ 317 (367)
T cd05844 245 GRVTFLGAQPHAEVRELMRRAR--IFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAV-EDGETGLL 317 (367)
T ss_pred CeEEECCCCCHHHHHHHHHhCC--EEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhhe-ecCCeeEE
Confidence 4678889998754 477777 55532 23568999999999999876643 55555 46677877
Q ss_pred ccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 405 PNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 405 ~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
++. -+.+++.++|.+++.|++
T Consensus 318 ~~~------~d~~~l~~~i~~l~~~~~ 338 (367)
T cd05844 318 VPE------GDVAALAAALGRLLADPD 338 (367)
T ss_pred ECC------CCHHHHHHHHHHHHcCHH
Confidence 642 378999999999998754
No 79
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.38 E-value=0.0003 Score=69.03 Aligned_cols=80 Identities=14% Similarity=0.020 Sum_probs=54.9
Q ss_pred CCccccccCch-hhhhccccCCceeee----cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCC
Q 011608 338 MGLVVPDWAPQ-VEILGHASVGGFLSH----CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTEN 412 (481)
Q Consensus 338 ~~~~v~~~~pq-~~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 412 (481)
.++...++..+ .+++..++ ++|+- |--++++||+++|+|+|+-...+ ....+ ++ +.|....
T Consensus 249 ~~v~~~g~~~~~~~~~~~ad--i~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~------ 314 (358)
T cd03812 249 DKVIFLGVRNDVPELLQAMD--VFLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSL------ 314 (358)
T ss_pred CcEEEecccCCHHHHHHhcC--EEEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeC------
Confidence 35666676444 56777777 45532 44579999999999999865544 33344 45 5555542
Q ss_pred ccCHHHHHHHHHHHhcCCc
Q 011608 413 LVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 413 ~~~~~~l~~al~~vl~~~~ 431 (481)
.-++++++++|.+++.|+.
T Consensus 315 ~~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 315 DESPEIWAEEILKLKSEDR 333 (358)
T ss_pred CCCHHHHHHHHHHHHhCcc
Confidence 2358999999999999876
No 80
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.36 E-value=0.00082 Score=65.52 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=53.0
Q ss_pred CccccccCc-hhhhhccccCCceeeecC----CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCc
Q 011608 339 GLVVPDWAP-QVEILGHASVGGFLSHCG----WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENL 413 (481)
Q Consensus 339 ~~~v~~~~p-q~~lL~~~~~~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 413 (481)
++.+.+..+ -.+++..++ ++|..+. -+++.||+++|+|+|+. |...+...+ ++ .|..++.
T Consensus 252 ~v~~~g~~~~~~~~~~~ad--i~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~-~~--~g~~~~~------ 316 (365)
T cd03807 252 KVILLGERSDVPALLNALD--VFVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELV-GD--TGFLVPP------ 316 (365)
T ss_pred eEEEccccccHHHHHHhCC--EEEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHh-hc--CCEEeCC------
Confidence 454444443 346777777 6775543 47999999999999985 444555555 34 4555432
Q ss_pred cCHHHHHHHHHHHhcCCc
Q 011608 414 VKREEIEMMVRRILVDKE 431 (481)
Q Consensus 414 ~~~~~l~~al~~vl~~~~ 431 (481)
-+.+++.+++.+++++++
T Consensus 317 ~~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 317 GDPEALAEAIEALLADPA 334 (365)
T ss_pred CCHHHHHHHHHHHHhChH
Confidence 368999999999998753
No 81
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.33 E-value=0.00023 Score=68.98 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=53.2
Q ss_pred CCccccccCch-hhhhccccCCceee--e--cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCC
Q 011608 338 MGLVVPDWAPQ-VEILGHASVGGFLS--H--CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTEN 412 (481)
Q Consensus 338 ~~~~v~~~~pq-~~lL~~~~~~~~I~--H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 412 (481)
.++.+.+|.+. .+++..++ ++|. + |.-+++.||+++|+|+|+.... .....+ ++.+.|...+.
T Consensus 246 ~~v~~~g~~~~~~~~~~~~d--~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~----- 313 (353)
T cd03811 246 DRVHFLGFQSNPYPYLKAAD--LFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVPV----- 313 (353)
T ss_pred ccEEEecccCCHHHHHHhCC--EEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEECC-----
Confidence 36777777764 46787877 4552 2 3356899999999999985443 455565 57778877642
Q ss_pred ccCHHHH---HHHHHHHhcCCc
Q 011608 413 LVKREEI---EMMVRRILVDKE 431 (481)
Q Consensus 413 ~~~~~~l---~~al~~vl~~~~ 431 (481)
-+.+.+ .+++...+.++.
T Consensus 314 -~~~~~~~~~~~~i~~~~~~~~ 334 (353)
T cd03811 314 -GDEAALAAAALALLDLLLDPE 334 (353)
T ss_pred -CCHHHHHHHHHHHHhccCChH
Confidence 366666 555555555543
No 82
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.33 E-value=0.0002 Score=70.19 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=52.0
Q ss_pred CccccccCch-hhhhccccCCceeee----cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCc
Q 011608 339 GLVVPDWAPQ-VEILGHASVGGFLSH----CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENL 413 (481)
Q Consensus 339 ~~~v~~~~pq-~~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 413 (481)
++.+.++..+ ..++..+++ +|.- |..+++.||+++|+|+|+. |.......+ ++.|..+..
T Consensus 246 ~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~~g~~~~~-------- 310 (360)
T cd04951 246 RVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GDSGLIVPI-------- 310 (360)
T ss_pred cEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cCCceEeCC--------
Confidence 5766677654 567878774 4432 2256899999999999974 445555565 454444332
Q ss_pred cCHHHHHHHHHHHhcC
Q 011608 414 VKREEIEMMVRRILVD 429 (481)
Q Consensus 414 ~~~~~l~~al~~vl~~ 429 (481)
-+.+++.+++.+++.+
T Consensus 311 ~~~~~~~~~i~~ll~~ 326 (360)
T cd04951 311 SDPEALANKIDEILKM 326 (360)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 3789999999999854
No 83
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.26 E-value=3.8e-06 Score=68.25 Aligned_cols=116 Identities=25% Similarity=0.203 Sum_probs=76.4
Q ss_pred EEEEEeCCCCCCChHH---HHHHHHHHHhCCC-cEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCcc
Q 011608 266 VIYVSFGGGGTLSANQ---MIEVAWGLELSQQ-RFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLV 341 (481)
Q Consensus 266 vv~vs~GS~~~~~~~~---~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~ 341 (481)
.+||+-||....+--. -++....|.+.|. +.|.+++.+.. ..|+....-.+..++.
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~--------------------~~~d~~~~~~k~~gl~ 64 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP--------------------FFGDPIDLIRKNGGLT 64 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc--------------------CCCCHHHhhcccCCeE
Confidence 7999999975321111 2346677777775 67888876521 0111111111222333
Q ss_pred --ccccCch-hhhhccccCCceeeecCCchhHHHHHcCcceeeccc----ccchhhhHHHHHHhhceeEe
Q 011608 342 --VPDWAPQ-VEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPL----YAEQKMNATMLAEELGVAVR 404 (481)
Q Consensus 342 --v~~~~pq-~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~g~~ 404 (481)
..+|.|- .+..+.++ ++|+|+|.||++|.|..|+|.|+++= -.+|-.-|..++ +.|-=..
T Consensus 65 id~y~f~psl~e~I~~Ad--lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~~ 131 (170)
T KOG3349|consen 65 IDGYDFSPSLTEDIRSAD--LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLYY 131 (170)
T ss_pred EEEEecCccHHHHHhhcc--EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEEE
Confidence 3466775 55566666 99999999999999999999999994 478999999994 6665544
No 84
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.23 E-value=0.00015 Score=72.70 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=60.3
Q ss_pred CCCccccccCch-hhhhccccCCcee--ee--cCCc-hhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 337 KMGLVVPDWAPQ-VEILGHASVGGFL--SH--CGWN-STLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 337 ~~~~~v~~~~pq-~~lL~~~~~~~~I--~H--gG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
..++.+.+++++ ..++..++ ++| ++ .|.+ .+.||+++|+|+|+.+...+. .. +..|.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~ad--v~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~-~~~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAA--VAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----ID-ALPGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCC--EEEecccccCCcccHHHHHHHcCCCEEecCccccc-----cc-ccCCcceEeC----
Confidence 357888899985 45777777 455 32 3543 699999999999998764321 11 2345666543
Q ss_pred CCccCHHHHHHHHHHHhcCCc-hHHHHHHHHH
Q 011608 411 ENLVKREEIEMMVRRILVDKE-GQALRSRVKE 441 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~~-~~~~r~~a~~ 441 (481)
-+.++++++|.+++.|+. .+.+.+++++
T Consensus 347 ---~~~~~la~ai~~ll~~~~~~~~~~~~ar~ 375 (397)
T TIGR03087 347 ---ADPADFAAAILALLANPAEREELGQAARR 375 (397)
T ss_pred ---CCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 378999999999998754 2334444443
No 85
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.22 E-value=0.0047 Score=67.41 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=59.6
Q ss_pred CccccccCchhh---hhcccc--CCceeee---cCC-chhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccC
Q 011608 339 GLVVPDWAPQVE---ILGHAS--VGGFLSH---CGW-NSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMP 409 (481)
Q Consensus 339 ~~~v~~~~pq~~---lL~~~~--~~~~I~H---gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 409 (481)
+|...+++++.+ ++..++ .++||.= =|+ .++.||+++|+|+|+-...+ ....+ +.-.-|+.+++
T Consensus 549 ~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLVdP-- 621 (1050)
T TIGR02468 549 QVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLVDP-- 621 (1050)
T ss_pred eEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEECC--
Confidence 566678887755 344331 2356653 333 48999999999999986533 22333 34455776653
Q ss_pred CCCccCHHHHHHHHHHHhcCCc-hHHHHHHHHH
Q 011608 410 TENLVKREEIEMMVRRILVDKE-GQALRSRVKE 441 (481)
Q Consensus 410 ~~~~~~~~~l~~al~~vl~~~~-~~~~r~~a~~ 441 (481)
-+.+.|+++|.+++.|+. ...|.+++++
T Consensus 622 ----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~ 650 (1050)
T TIGR02468 622 ----HDQQAIADALLKLVADKQLWAECRQNGLK 650 (1050)
T ss_pred ----CCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 478999999999998865 3444444444
No 86
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.21 E-value=0.0035 Score=61.55 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=49.2
Q ss_pred CCCccccccCchhh---hhccccCCceeeecCC-----chhHHHHHcCcceeecccccchhhhHHHHHHhhceeEecccc
Q 011608 337 KMGLVVPDWAPQVE---ILGHASVGGFLSHCGW-----NSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEM 408 (481)
Q Consensus 337 ~~~~~v~~~~pq~~---lL~~~~~~~~I~HgG~-----~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~ 408 (481)
.+++.+.+++|+.+ ++..++ +++.+.=. +++.||+++|+|+|+....+ +...+ +..|.. .+.
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad--~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~~g~~--~~~- 316 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAA--LFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GDKAIY--FKV- 316 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCC--EEEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cCCeeE--ecC-
Confidence 35788889998865 454555 45544322 47999999999999875542 22223 332332 221
Q ss_pred CCCCccCHHHHHHHHHHHhcCCc
Q 011608 409 PTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 409 ~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
. + .+.+++.+++.+++
T Consensus 317 ---~--~--~l~~~i~~l~~~~~ 332 (363)
T cd04955 317 ---G--D--DLASLLEELEADPE 332 (363)
T ss_pred ---c--h--HHHHHHHHHHhCHH
Confidence 1 1 29999999998754
No 87
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.19 E-value=0.00069 Score=66.77 Aligned_cols=321 Identities=14% Similarity=0.152 Sum_probs=161.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh----hhhhccCCCCCCceEEEecCCCCCCCCCCCCcc
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST----VQSQLRNLPNPHLFNIVSLPPVDISALLDADAS 81 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 81 (481)
++|+++. +++-.+.=+.++.++|.+..+.++.++.+....+. ....+... ++... +.... .+ ...
T Consensus 1 ~ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~----~~~~~--~~~~~-~~-~~~-- 69 (365)
T TIGR03568 1 KKICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKD----GFDID--EKIEI-LL-DSD-- 69 (365)
T ss_pred CeEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHc----CCCCC--Ccccc-cc-CCC--
Confidence 3566665 89999999999999999743788888887643321 01111111 11110 10000 01 110
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCCcEEE--EcCCCc-hHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhcc
Q 011608 82 IVIKIIFMMRESLPALRSSISTLKPRPTALF--ADLFGT-EAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEE 158 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI--~D~~~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (481)
....+..........+.+++++. +||+|| .|-+.. .++.+|..++||++-+.-+--
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~--~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~r------------------- 128 (365)
T TIGR03568 70 SNAGMAKSMGLTIIGFSDAFERL--KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEV------------------- 128 (365)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHh--CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCcc-------------------
Confidence 00122344445566778888888 999987 555444 356899999999985443210
Q ss_pred ccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeeeCC
Q 011608 159 HYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPIGP 238 (481)
Q Consensus 159 ~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGp 238 (481)
-.+. + .+...... .+...+.+.+.+. ..-.......++ .+++.+|.
T Consensus 129 ---------s~~~--------~-------eE~~r~~i------~~la~l~f~~t~~---~~~~L~~eg~~~-~~i~~tG~ 174 (365)
T TIGR03568 129 ---------TEGA--------I-------DESIRHAI------TKLSHLHFVATEE---YRQRVIQMGEDP-DRVFNVGS 174 (365)
T ss_pred ---------CCCC--------c-------hHHHHHHH------HHHHhhccCCCHH---HHHHHHHcCCCC-CcEEEECC
Confidence 0000 0 00000000 0000011111111 111111111110 13777886
Q ss_pred cccCCCCCC-CCCchhhhhhhccCCCCcEEEEEeCCCC---CCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccc
Q 011608 239 VVRSMGSSH-MSENSSLLEWLDMQPTESVIYVSFGGGG---TLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFK 314 (481)
Q Consensus 239 l~~~~~~~~-~~~~~~~~~~l~~~~~~~vv~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~ 314 (481)
...+.-... ....+++.+.+.-.++++.|+|++=... ....+.+..+++++...+.++++.+.....
T Consensus 175 ~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p--------- 245 (365)
T TIGR03568 175 PGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA--------- 245 (365)
T ss_pred cHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC---------
Confidence 543311000 0122333333322123358888875432 344567899999998877666666532211
Q ss_pred cCCCCCCCCCCCCchhHHhhhc-CCCccccccC---chhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhh
Q 011608 315 VGDGSSDGTPDYLPDGFLTRNA-KMGLVVPDWA---PQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKM 390 (481)
Q Consensus 315 ~~~~~~~~~~~~lp~~~~~~~~-~~~~~v~~~~---pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~ 390 (481)
++ ..+-+.+.+... .+++.+.+-+ ...+++++++ ++|+-++.+- .||.+.|+|.|.+- +-+
T Consensus 246 -----~~---~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~---~R~- 310 (365)
T TIGR03568 246 -----GS---RIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG---TRQ- 310 (365)
T ss_pred -----Cc---hHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec---CCc-
Confidence 00 001111222111 2467666544 4567888888 8998886555 99999999999764 211
Q ss_pred hHHHHHHhhceeEe-ccccCCCCccCHHHHHHHHHHHh
Q 011608 391 NATMLAEELGVAVR-PNEMPTENLVKREEIEMMVRRIL 427 (481)
Q Consensus 391 na~~v~~~~G~g~~-~~~~~~~~~~~~~~l~~al~~vl 427 (481)
.-+ +.|-.+. +. .++++|.+++.+++
T Consensus 311 --e~~--~~g~nvl~vg-------~~~~~I~~a~~~~~ 337 (365)
T TIGR03568 311 --KGR--LRADSVIDVD-------PDKEEIVKAIEKLL 337 (365)
T ss_pred --hhh--hhcCeEEEeC-------CCHHHHHHHHHHHh
Confidence 111 2243322 33 37899999999855
No 88
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.16 E-value=0.0042 Score=61.55 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=54.3
Q ss_pred CccccccCc-hhhhhccccCCcee--ee--cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCc
Q 011608 339 GLVVPDWAP-QVEILGHASVGGFL--SH--CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENL 413 (481)
Q Consensus 339 ~~~v~~~~p-q~~lL~~~~~~~~I--~H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 413 (481)
++.+.++.. -.+++..++ ++| ++ |--+++.||+++|+|+|+-... .+...+ ++-..|..++.
T Consensus 256 ~v~~~g~~~~~~~~~~~ad--i~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i-~~~~~g~~~~~------ 322 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALD--LFVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELV-QHGVTGALVPP------ 322 (374)
T ss_pred eEEEcCCcCCHHHHHHhcC--EEEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHh-cCCCceEEeCC------
Confidence 344445443 356788887 455 33 3456999999999999996653 344444 45456766542
Q ss_pred cCHHHHHHHHHHHhcCCc
Q 011608 414 VKREEIEMMVRRILVDKE 431 (481)
Q Consensus 414 ~~~~~l~~al~~vl~~~~ 431 (481)
-+.++++++|.+++.++.
T Consensus 323 ~d~~~la~~i~~l~~~~~ 340 (374)
T TIGR03088 323 GDAVALARALQPYVSDPA 340 (374)
T ss_pred CCHHHHHHHHHHHHhCHH
Confidence 378999999999998754
No 89
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.13 E-value=0.012 Score=62.78 Aligned_cols=127 Identities=12% Similarity=0.149 Sum_probs=70.1
Q ss_pred cEEEEEcCC-------------CccCHHHHHHHHHH--------HHhCCCC----eEEEEecCCCchhhh---hhccCCC
Q 011608 6 THIALLASP-------------GMGHFIPVLELGKR--------FATQNDF----QVTIFVVATDTSTVQ---SQLRNLP 57 (481)
Q Consensus 6 ~~vvl~~~p-------------~~GHi~P~l~La~~--------L~~r~Gh----~Vt~~~~~~~~~~~~---~~~~~~~ 57 (481)
++|++++.= +.|+..=.+.+|++ |+++ || +|+++|--.....-. ..++...
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~-G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~ 334 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQ-GLEITPKILIVTRLIPDAEGTTCNQRLEKVY 334 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEecCCCCcccccccccccccc
Confidence 788776653 35666666777776 5688 99 777888543211100 0022223
Q ss_pred CCCceEEEecCCCCCCC-CCCCCccHHHHHHHHHHHhhHHHHHH-HhhcCCCCcEEEEcCCCch--HHHHHHHhCCceEE
Q 011608 58 NPHLFNIVSLPPVDISA-LLDADASIVIKIIFMMRESLPALRSS-ISTLKPRPTALFADLFGTE--AFQIADEFEMLKYV 133 (481)
Q Consensus 58 ~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~D~VI~D~~~~~--~~~~A~~~giP~v~ 133 (481)
...+.+.+.+|...... .++.-.. ...++.+.......+.+. ..+...+||+|++.+.... +..+++++|||.+.
T Consensus 335 ~~~~~~I~rvp~g~~~~~~~~~~i~-k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP~v~ 413 (784)
T TIGR02470 335 GTEHAWILRVPFRTENGIILRNWIS-RFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVTQCT 413 (784)
T ss_pred CCCceEEEEecCCCCcccccccccC-HHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCCEEE
Confidence 33477777777544221 0011011 122333333334344433 3333458999999886653 45789999999765
Q ss_pred E
Q 011608 134 Y 134 (481)
Q Consensus 134 ~ 134 (481)
.
T Consensus 414 t 414 (784)
T TIGR02470 414 I 414 (784)
T ss_pred E
Confidence 4
No 90
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.11 E-value=0.00086 Score=68.56 Aligned_cols=196 Identities=17% Similarity=0.171 Sum_probs=101.1
Q ss_pred CeeeeC-CcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHH--hC--CCcEEEEEcCCCCC
Q 011608 232 PIYPIG-PVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLE--LS--QQRFIWVVRPPMDN 306 (481)
Q Consensus 232 ~~~~vG-pl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~~~ 306 (481)
++.||| |++..-... ...++..+-+.-.+++++|-+--||-...=...+..++++.+ .. +.+|++.....
T Consensus 382 ~v~yVGHPL~d~i~~~--~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~--- 456 (608)
T PRK01021 382 RTVYLGHPLVETISSF--SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANP--- 456 (608)
T ss_pred CeEEECCcHHhhcccC--CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCch---
Confidence 589999 666542111 122333333333335568999999853322222445666665 33 34454432111
Q ss_pred CCCCcccccCCCCCCCCCCCCchhHHhhhcCCCc---c-ccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeec
Q 011608 307 DVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGL---V-VPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVW 382 (481)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~---~-v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~ 382 (481)
...+.+.+.....++ . +.+- ...+++..++ +.+.-+|- .|.|+..+|+|||++
T Consensus 457 -------------------~~~~~i~~~~~~~~~~~~~ii~~~-~~~~~m~aaD--~aLaaSGT-aTLEaAL~g~PmVV~ 513 (608)
T PRK01021 457 -------------------KYDHLILEVLQQEGCLHSHIVPSQ-FRYELMRECD--CALAKCGT-IVLETALNQTPTIVT 513 (608)
T ss_pred -------------------hhHHHHHHHHhhcCCCCeEEecCc-chHHHHHhcC--eeeecCCH-HHHHHHHhCCCEEEE
Confidence 011222332222121 1 1111 1256788877 56666654 689999999999984
Q ss_pred -ccccchhhhHHHHHHhh----------ceeEeccc-cCC-CCccCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHH
Q 011608 383 -PLYAEQKMNATMLAEEL----------GVAVRPNE-MPT-ENLVKREEIEMMVRRILVDKE-GQALRSRVKELKHSAKK 448 (481)
Q Consensus 383 -P~~~DQ~~na~~v~~~~----------G~g~~~~~-~~~-~~~~~~~~l~~al~~vl~~~~-~~~~r~~a~~l~~~~~~ 448 (481)
-...=-+..++++. +. =+|..+-+ .-. +++.|++.|.+++ ++|.|++ -+.+++..+++++.
T Consensus 514 YK~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~--- 588 (608)
T PRK01021 514 CQLRPFDTFLAKYIF-KIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQA--- 588 (608)
T ss_pred EecCHHHHHHHHHHH-hccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHH---
Confidence 33333445666664 31 11222111 111 2578999999997 8887764 34455555555555
Q ss_pred HhhcCCChHHHHH
Q 011608 449 ASTKGGSSYNALS 461 (481)
Q Consensus 449 ~~~~~g~~~~~~~ 461 (481)
+.++-...+.+.
T Consensus 589 -Lg~~~~~~~~~~ 600 (608)
T PRK01021 589 -MNESASTMKECL 600 (608)
T ss_pred -hcCCCCCHHHHH
Confidence 554444444433
No 91
>PLN02275 transferase, transferring glycosyl groups
Probab=98.08 E-value=0.0075 Score=59.76 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=50.7
Q ss_pred CCcccc-ccCchhhh---hccccCCceee-e-----cC-CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEecc
Q 011608 338 MGLVVP-DWAPQVEI---LGHASVGGFLS-H-----CG-WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPN 406 (481)
Q Consensus 338 ~~~~v~-~~~pq~~l---L~~~~~~~~I~-H-----gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~ 406 (481)
.|+++. +|+|+.++ ++.++ ++|. + -| -+++.||+++|+|+|+... ......| ++-+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aD--v~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCC--EEEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEEC
Confidence 355543 47887654 77777 5663 1 12 2479999999999999753 2355555 5666787753
Q ss_pred ccCCCCccCHHHHHHHHHHHh
Q 011608 407 EMPTENLVKREEIEMMVRRIL 427 (481)
Q Consensus 407 ~~~~~~~~~~~~l~~al~~vl 427 (481)
+.++++++|.++|
T Consensus 359 --------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --------SSSELADQLLELL 371 (371)
T ss_pred --------CHHHHHHHHHHhC
Confidence 4789999998765
No 92
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.02 E-value=0.0037 Score=62.93 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=50.5
Q ss_pred ccccCchhhhhccccCCceeee----cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHH
Q 011608 342 VPDWAPQVEILGHASVGGFLSH----CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKRE 417 (481)
Q Consensus 342 v~~~~pq~~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~ 417 (481)
..++.+..+++...+ +||.= +=.+++.||+++|+|+|+.-..+ + ..+ .+-+-|...+ +.+
T Consensus 288 f~G~~~~~~~~~~~D--vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~~--------~~~ 351 (462)
T PLN02846 288 YPGRDHADPLFHDYK--VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTYD--------DGK 351 (462)
T ss_pred ECCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEecC--------CHH
Confidence 446666667887776 77765 33468999999999999976543 2 233 3434443332 678
Q ss_pred HHHHHHHHHhcCC
Q 011608 418 EIEMMVRRILVDK 430 (481)
Q Consensus 418 ~l~~al~~vl~~~ 430 (481)
++.+++.++|.++
T Consensus 352 ~~a~ai~~~l~~~ 364 (462)
T PLN02846 352 GFVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHHccC
Confidence 9999999998754
No 93
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.01 E-value=0.00063 Score=66.39 Aligned_cols=103 Identities=22% Similarity=0.270 Sum_probs=63.5
Q ss_pred chhhhhccccCCceeeecCCchhHHHHHcCcceeecc-cccchhhhHHHHHHhhce-eEecccc-C-------CCCccCH
Q 011608 347 PQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWP-LYAEQKMNATMLAEELGV-AVRPNEM-P-------TENLVKR 416 (481)
Q Consensus 347 pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~-g~~~~~~-~-------~~~~~~~ 416 (481)
.-.+++..+++ ++++-| ..|.|+...|+|||++= ...=.+..|++++ +... |+ .|.+ + -+++.|+
T Consensus 253 ~~~~~m~~ad~-al~~SG--TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lv-k~~~isL-~Niia~~~v~PEliQ~~~~~ 327 (373)
T PF02684_consen 253 ESYDAMAAADA-ALAASG--TATLEAALLGVPMVVAYKVSPLTYFIAKRLV-KVKYISL-PNIIAGREVVPELIQEDATP 327 (373)
T ss_pred chHHHHHhCcc-hhhcCC--HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhh-cCCEeec-hhhhcCCCcchhhhcccCCH
Confidence 34556777774 444444 57899999999999853 2234556677764 3222 11 1111 0 0367899
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChH
Q 011608 417 EEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSY 457 (481)
Q Consensus 417 ~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~ 457 (481)
+.|.+++.++|.|++ .++..+...+.++..+..+..+.
T Consensus 328 ~~i~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 365 (373)
T PF02684_consen 328 ENIAAELLELLENPE---KRKKQKELFREIRQLLGPGASSR 365 (373)
T ss_pred HHHHHHHHHHhcCHH---HHHHHHHHHHHHHHhhhhccCCH
Confidence 999999999999876 45555555555555455444443
No 94
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.00 E-value=0.0067 Score=60.85 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=61.1
Q ss_pred CCccccccCchhh---hhccccCCceee--e-------cCC-chhHHHHHcCcceeecccccchhhhHHHHHHhhceeEe
Q 011608 338 MGLVVPDWAPQVE---ILGHASVGGFLS--H-------CGW-NSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVR 404 (481)
Q Consensus 338 ~~~~v~~~~pq~~---lL~~~~~~~~I~--H-------gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~ 404 (481)
+++.+.+|+|+.+ ++..++ +||. + -|. ++++||+++|+|+|+....+ ....+ ++-..|..
T Consensus 279 ~~V~~~G~~~~~el~~~l~~aD--v~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v-~~~~~G~l 351 (406)
T PRK15427 279 DVVEMPGFKPSHEVKAMLDDAD--VFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELV-EADKSGWL 351 (406)
T ss_pred CeEEEeCCCCHHHHHHHHHhCC--EEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhh-cCCCceEE
Confidence 4688889999865 566777 5654 2 344 56899999999999975432 33444 45456776
Q ss_pred ccccCCCCccCHHHHHHHHHHHhc-CCc-hHHHHHHHH
Q 011608 405 PNEMPTENLVKREEIEMMVRRILV-DKE-GQALRSRVK 440 (481)
Q Consensus 405 ~~~~~~~~~~~~~~l~~al~~vl~-~~~-~~~~r~~a~ 440 (481)
++. -+.++++++|.+++. |++ ...+.++++
T Consensus 352 v~~------~d~~~la~ai~~l~~~d~~~~~~~~~~ar 383 (406)
T PRK15427 352 VPE------NDAQALAQRLAAFSQLDTDELAPVVKRAR 383 (406)
T ss_pred eCC------CCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 642 379999999999998 654 233344443
No 95
>PLN00142 sucrose synthase
Probab=98.00 E-value=0.0069 Score=64.63 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=60.0
Q ss_pred HHHHHHHhCCCCeEE----EEecCCCchhhh--hh-ccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHHHHHHhhHH
Q 011608 24 ELGKRFATQNDFQVT----IFVVATDTSTVQ--SQ-LRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIFMMRESLPA 96 (481)
Q Consensus 24 ~La~~L~~r~Gh~Vt----~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (481)
.|+++|+++ ||+|+ ++|--.....-. .. ++......+.+.+.+|.....+.++.-.. ...++.+.......
T Consensus 319 el~~~l~~~-G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~~i~-ke~l~p~L~~f~~~ 396 (815)
T PLN00142 319 EMLLRIKQQ-GLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILRKWIS-RFDVWPYLETFAED 396 (815)
T ss_pred HHHHHHHhc-CCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCccccccccC-HHHHHHHHHHHHHH
Confidence 366888999 99875 766421111101 01 22333334777777776442211111111 12233333443444
Q ss_pred HHHHH-hhcCCCCcEEEEcCCCch--HHHHHHHhCCceEEEec
Q 011608 97 LRSSI-STLKPRPTALFADLFGTE--AFQIADEFEMLKYVYIA 136 (481)
Q Consensus 97 ~~~~l-~~~~~~~D~VI~D~~~~~--~~~~A~~~giP~v~~~~ 136 (481)
+...+ ++...+||+|.+.+.... +..+++++|||.+....
T Consensus 397 ~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 397 AASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred HHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 44333 344447999999987764 45799999999886443
No 96
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.98 E-value=0.0028 Score=62.04 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=53.4
Q ss_pred CCCccccccCchh---hhhccccCCceee--ecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCC
Q 011608 337 KMGLVVPDWAPQV---EILGHASVGGFLS--HCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTE 411 (481)
Q Consensus 337 ~~~~~v~~~~pq~---~lL~~~~~~~~I~--HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 411 (481)
..++.+.+|+|+. +++..+++-++-+ -|..+++.||+++|+|+|+-... .....+ .+. |..++.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~-~~~--~~~~~~---- 320 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVA-GDA--ALYFDP---- 320 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCC----Ccccee-cCc--eeeeCC----
Confidence 3478888999875 4566777422222 13345899999999999985542 222222 233 333331
Q ss_pred CccCHHHHHHHHHHHhcCCc
Q 011608 412 NLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 412 ~~~~~~~l~~al~~vl~~~~ 431 (481)
-+.+++.++|.+++.|+.
T Consensus 321 --~~~~~~~~~i~~l~~~~~ 338 (365)
T cd03809 321 --LDPEALAAAIERLLEDPA 338 (365)
T ss_pred --CCHHHHHHHHHHHhcCHH
Confidence 278999999999998866
No 97
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.86 E-value=0.034 Score=55.28 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=52.2
Q ss_pred cccCchh---hhhccccCCceeee----cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccC
Q 011608 343 PDWAPQV---EILGHASVGGFLSH----CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVK 415 (481)
Q Consensus 343 ~~~~pq~---~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~ 415 (481)
.+++++. .++..++ ++|.= +...++.||+++|+|+|+... ......+ +.-+.|..++.-+.+..-.
T Consensus 266 ~~~~~~~~~~~~~~~aD--v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~~~~~~~ 338 (388)
T TIGR02149 266 NKMLPKEELVELLSNAE--VFVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDNSDADGF 338 (388)
T ss_pred cCCCCHHHHHHHHHhCC--EEEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCCCcccch
Confidence 4667654 4577777 55541 223577999999999998654 3345555 4656787775310001112
Q ss_pred HHHHHHHHHHHhcCCc
Q 011608 416 REEIEMMVRRILVDKE 431 (481)
Q Consensus 416 ~~~l~~al~~vl~~~~ 431 (481)
.+++.++|.+++.|+.
T Consensus 339 ~~~l~~~i~~l~~~~~ 354 (388)
T TIGR02149 339 QAELAKAINILLADPE 354 (388)
T ss_pred HHHHHHHHHHHHhCHH
Confidence 3899999999998754
No 98
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.78 E-value=0.0041 Score=63.66 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=44.2
Q ss_pred hhhccccCCceee---ecCCc-hhHHHHHcCcceeeccccc--chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHH
Q 011608 350 EILGHASVGGFLS---HCGWN-STLESIVNGVPLIVWPLYA--EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMV 423 (481)
Q Consensus 350 ~lL~~~~~~~~I~---HgG~~-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al 423 (481)
.++..++ +||. +-|+| +.+||+++|+|.|+.-..+ |.-.+...- ..-+.|..++. -+++++.++|
T Consensus 352 ~~~~~aD--v~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~~------~d~~~la~~i 422 (466)
T PRK00654 352 RIYAGAD--MFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFDD------FNAEDLLRAL 422 (466)
T ss_pred HHHhhCC--EEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeCC------CCHHHHHHHH
Confidence 4667777 5553 33554 8899999999999865432 211111000 12266777653 4789999999
Q ss_pred HHHhc
Q 011608 424 RRILV 428 (481)
Q Consensus 424 ~~vl~ 428 (481)
.+++.
T Consensus 423 ~~~l~ 427 (466)
T PRK00654 423 RRALE 427 (466)
T ss_pred HHHHH
Confidence 99885
No 99
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.76 E-value=0.053 Score=53.63 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=50.6
Q ss_pred CccccccC--chh---hhhccccCCceeeec---C-CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccC
Q 011608 339 GLVVPDWA--PQV---EILGHASVGGFLSHC---G-WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMP 409 (481)
Q Consensus 339 ~~~v~~~~--pq~---~lL~~~~~~~~I~Hg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 409 (481)
++.+.++. ++. +++..++ +|+.-. | -.++.||+++|+|+|+....+ ....+ ++-..|...+
T Consensus 253 ~v~~~~~~~~~~~~~~~~~~~ad--~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i-~~~~~g~~~~--- 322 (372)
T cd03792 253 DIHVLTLPPVSDLEVNALQRAST--VVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQI-EDGETGFLVD--- 322 (372)
T ss_pred CeEEEecCCCCHHHHHHHHHhCe--EEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhc-ccCCceEEeC---
Confidence 56665665 332 4566666 666432 2 349999999999999876432 33344 4555666543
Q ss_pred CCCccCHHHHHHHHHHHhcCCc
Q 011608 410 TENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 410 ~~~~~~~~~l~~al~~vl~~~~ 431 (481)
+.+.++++|.+++.+++
T Consensus 323 -----~~~~~a~~i~~ll~~~~ 339 (372)
T cd03792 323 -----TVEEAAVRILYLLRDPE 339 (372)
T ss_pred -----CcHHHHHHHHHHHcCHH
Confidence 35678889999998754
No 100
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.74 E-value=0.014 Score=56.29 Aligned_cols=351 Identities=17% Similarity=0.139 Sum_probs=190.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc--hhhhhhccCCCCC-CceEEEecCCCCCCCCCCCCccH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDT--STVQSQLRNLPNP-HLFNIVSLPPVDISALLDADASI 82 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 82 (481)
++|+++ ++++=.++-+-+|.+++.+.++.+..++.+.... +.....++..... +++. . ....++
T Consensus 4 ~Kv~~I-~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~--------L-~i~~~~--- 70 (383)
T COG0381 4 LKVLTI-FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYD--------L-NIMKPG--- 70 (383)
T ss_pred eEEEEE-EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcc--------h-hccccC---
Confidence 455555 4999999999999999998833777777776444 3322223322211 1111 1 110111
Q ss_pred HHHHHHHHHHhhHHHHHHHhhcCCCCcEEE--EcCCCchH-HHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccc
Q 011608 83 VIKIIFMMRESLPALRSSISTLKPRPTALF--ADLFGTEA-FQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEH 159 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI--~D~~~~~~-~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (481)
..+......+...+.+++.+. +||+|+ .|-....+ ..+|.+.+||+.=+..+-
T Consensus 71 -~tl~~~t~~~i~~~~~vl~~~--kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGl--------------------- 126 (383)
T COG0381 71 -QTLGEITGNIIEGLSKVLEEE--KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGL--------------------- 126 (383)
T ss_pred -CCHHHHHHHHHHHHHHHHHhh--CCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccc---------------------
Confidence 134555666778888999988 999987 56544444 678999999986544321
Q ss_pred cCCCCCccCCCCcccCcccccccccCCCchhHHHHHHH-hhhhcccceEEecChhhhcHHHHHHHHhccCCCC--Ceeee
Q 011608 160 YGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRI-GLEMVTADGILINTWEDLEPTTLASLRDGISKLP--PIYPI 236 (481)
Q Consensus 160 ~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p--~~~~v 236 (481)
...... +++ ...+. .... ++.-+.++ +...-..+.+. .| .++.+
T Consensus 127 ------------Rt~~~~-~PE-----------E~NR~l~~~~--S~~hfapt----e~ar~nLl~EG---~~~~~Ifvt 173 (383)
T COG0381 127 ------------RTGDLY-FPE-----------EINRRLTSHL--SDLHFAPT----EIARKNLLREG---VPEKRIFVT 173 (383)
T ss_pred ------------ccCCCC-CcH-----------HHHHHHHHHh--hhhhcCCh----HHHHHHHHHcC---CCccceEEe
Confidence 000000 000 00000 0000 00001111 01111122222 22 27778
Q ss_pred CCcccCC---C-CCCCCCchhhhhh-hccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC---CCcEEEEEcCCCCCCC
Q 011608 237 GPVVRSM---G-SSHMSENSSLLEW-LDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS---QQRFIWVVRPPMDNDV 308 (481)
Q Consensus 237 Gpl~~~~---~-~~~~~~~~~~~~~-l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~ 308 (481)
|....+. . ... ..+.+.... +... .+..+++|+=-..+.. +.+..+..++.+. ...+.++++-+.+
T Consensus 174 Gnt~iDal~~~~~~~-~~~~~~~~~~~~~~-~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~--- 247 (383)
T COG0381 174 GNTVIDALLNTRDRV-LEDSKILAKGLDDK-DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPR--- 247 (383)
T ss_pred CChHHHHHHHHHhhh-ccchhhHHhhhccc-cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCC---
Confidence 8654331 0 000 012222221 2222 2338989875444444 4466666655442 1244455433321
Q ss_pred CCcccccCCCCCCCCCCCCchhH-HhhhcC-CCccc---cccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecc
Q 011608 309 SGSFFKVGDGSSDGTPDYLPDGF-LTRNAK-MGLVV---PDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWP 383 (481)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~lp~~~-~~~~~~-~~~~v---~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P 383 (481)
..+ ..+ ..++++ +++.+ .+|.+...++.++. +++|-.|. -.-||-..|+|++++=
T Consensus 248 ----------------~~v-~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~--~iltDSGg-iqEEAp~lg~Pvl~lR 307 (383)
T COG0381 248 ----------------PRV-RELVLKRLKNVERVKLIDPLGYLDFHNLMKNAF--LILTDSGG-IQEEAPSLGKPVLVLR 307 (383)
T ss_pred ----------------hhh-hHHHHHHhCCCCcEEEeCCcchHHHHHHHHhce--EEEecCCc-hhhhHHhcCCcEEeec
Confidence 011 111 133333 24544 36678889999988 89998874 5679999999999999
Q ss_pred cccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 011608 384 LYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQV 463 (481)
Q Consensus 384 ~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~ 463 (481)
..-+|+. .+ +.|.-+.+. .+.+.|.+++.+++++++ ..+|.+.. ...-|... +.+++
T Consensus 308 ~~TERPE---~v--~agt~~lvg-------~~~~~i~~~~~~ll~~~~---~~~~m~~~-------~npYgdg~-as~rI 364 (383)
T COG0381 308 DTTERPE---GV--EAGTNILVG-------TDEENILDAATELLEDEE---FYERMSNA-------KNPYGDGN-ASERI 364 (383)
T ss_pred cCCCCcc---ce--ecCceEEeC-------ccHHHHHHHHHHHhhChH---HHHHHhcc-------cCCCcCcc-hHHHH
Confidence 9999988 32 557666654 477999999999998876 55443322 23334443 66777
Q ss_pred HHHHHHHHHHHH
Q 011608 464 AKQCEMSLQGLM 475 (481)
Q Consensus 464 ~~~~~~~~~~~~ 475 (481)
++.+...+..+.
T Consensus 365 v~~l~~~~~~~~ 376 (383)
T COG0381 365 VEILLNYFDSLV 376 (383)
T ss_pred HHHHHHHhhhcc
Confidence 777776665443
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.72 E-value=0.1 Score=55.63 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=60.2
Q ss_pred CCccccccCch-hhhhccccCCceee---ecC-CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCC
Q 011608 338 MGLVVPDWAPQ-VEILGHASVGGFLS---HCG-WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTEN 412 (481)
Q Consensus 338 ~~~~v~~~~pq-~~lL~~~~~~~~I~---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 412 (481)
+++.+.+|.++ ..++..++ +||. +.| -+++.||+++|+|+|+.... .....| ++-..|..++. .
T Consensus 574 ~~V~flG~~~dv~~ll~aaD--v~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~----~ 642 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFN--AFLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPA----D 642 (694)
T ss_pred CcEEEcCCcchHHHHHHhcC--EEEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCC----C
Confidence 46777788765 45677777 5554 455 45899999999999997653 244444 45446877764 5
Q ss_pred ccCHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Q 011608 413 LVKREEIEMMVRRILVDKE-GQALRSRVKEL 442 (481)
Q Consensus 413 ~~~~~~l~~al~~vl~~~~-~~~~r~~a~~l 442 (481)
+.+.+++.+++.+++.+.. -..+++++++.
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~ 673 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADW 673 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHH
Confidence 5667778888777765321 12255554443
No 102
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.62 E-value=0.00081 Score=65.61 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=75.2
Q ss_pred CCCcEEEEEeCCCCCCC-hH---HHHHHHHHHHhC-CCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhc
Q 011608 262 PTESVIYVSFGGGGTLS-AN---QMIEVAWGLELS-QQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNA 336 (481)
Q Consensus 262 ~~~~vv~vs~GS~~~~~-~~---~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~ 336 (481)
.+++.++|++=...... ++ .+.++++++.+. +.++||.+...+. .-..+.+.+.
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~---------------------~~~~i~~~l~ 236 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR---------------------GSDIIIEKLK 236 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH---------------------HHHHHHHHHT
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch---------------------HHHHHHHHhc
Confidence 45669999986555555 33 355566666655 6778888742211 0012222222
Q ss_pred C-CCccccccCc---hhhhhccccCCceeeecCCchhH-HHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCC
Q 011608 337 K-MGLVVPDWAP---QVEILGHASVGGFLSHCGWNSTL-ESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTE 411 (481)
Q Consensus 337 ~-~~~~v~~~~p---q~~lL~~~~~~~~I~HgG~~s~~-eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 411 (481)
. +++.+..-++ ...+|.+++ ++|+-.| +++ ||.+.|+|+|.+ -|+..+=.-+ ..|..+.+.
T Consensus 237 ~~~~v~~~~~l~~~~~l~ll~~a~--~vvgdSs--GI~eEa~~lg~P~v~i---R~~geRqe~r--~~~~nvlv~----- 302 (346)
T PF02350_consen 237 KYDNVRLIEPLGYEEYLSLLKNAD--LVVGDSS--GIQEEAPSLGKPVVNI---RDSGERQEGR--ERGSNVLVG----- 302 (346)
T ss_dssp T-TTEEEE----HHHHHHHHHHES--EEEESSH--HHHHHGGGGT--EEEC---SSS-S-HHHH--HTTSEEEET-----
T ss_pred ccCCEEEECCCCHHHHHHHHhcce--EEEEcCc--cHHHHHHHhCCeEEEe---cCCCCCHHHH--hhcceEEeC-----
Confidence 1 2676665554 467888988 8999999 666 999999999999 2322222221 335554443
Q ss_pred CccCHHHHHHHHHHHhcC
Q 011608 412 NLVKREEIEMMVRRILVD 429 (481)
Q Consensus 412 ~~~~~~~l~~al~~vl~~ 429 (481)
.+.++|.+++++++.+
T Consensus 303 --~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 303 --TDPEAIIQAIEKALSD 318 (346)
T ss_dssp --SSHHHHHHHHHHHHH-
T ss_pred --CCHHHHHHHHHHHHhC
Confidence 5899999999999976
No 103
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.61 E-value=0.044 Score=55.26 Aligned_cols=79 Identities=20% Similarity=0.069 Sum_probs=52.9
Q ss_pred CCccccccCchh---hhhccccCCceee-----ecCCchhHHHHHcCcceeecccccchhhhHHHHHH---hhceeEecc
Q 011608 338 MGLVVPDWAPQV---EILGHASVGGFLS-----HCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAE---ELGVAVRPN 406 (481)
Q Consensus 338 ~~~~v~~~~pq~---~lL~~~~~~~~I~-----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~---~~G~g~~~~ 406 (481)
+++...+++|+. .+|..++ ++|+ |-| .++.||+++|+|.|+.-..+.- ..+++ .-..|...
T Consensus 305 ~~V~f~g~v~~~~l~~~l~~ad--v~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp~----~~iv~~~~~g~~G~l~- 376 (419)
T cd03806 305 DKVEFVVNAPFEELLEELSTAS--IGLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGPL----LDIVVPWDGGPTGFLA- 376 (419)
T ss_pred CeEEEecCCCHHHHHHHHHhCe--EEEECCccCCcc-cHHHHHHHcCCcEEEEcCCCCc----hheeeccCCCCceEEe-
Confidence 467788888875 4676777 4543 333 3889999999999986543321 11212 33466553
Q ss_pred ccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 407 EMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 407 ~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
. ++++++++|.+++.++.
T Consensus 377 -----~--d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 -----S--TAEEYAEAIEKILSLSE 394 (419)
T ss_pred -----C--CHHHHHHHHHHHHhCCH
Confidence 2 78999999999998654
No 104
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.58 E-value=0.00082 Score=67.02 Aligned_cols=174 Identities=22% Similarity=0.269 Sum_probs=90.9
Q ss_pred CCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhc-----
Q 011608 262 PTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNA----- 336 (481)
Q Consensus 262 ~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~----- 336 (481)
++..++|.||.+....+++.+..-++-|++.+.-.+|....+.. + .+.+.++..
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~--------------~-------~~~l~~~~~~~Gv~ 340 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS--------------G-------EARLRRRFAAHGVD 340 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT--------------H-------HHHHHHHHHHTTS-
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH--------------H-------HHHHHHHHHHcCCC
Confidence 34559999999999999999999999999999989998864421 0 022222221
Q ss_pred CCCccccccCchhhhhc-cccCCcee---eecCCchhHHHHHcCcceeecccccchhhhH-HHHHHhhceeEeccccCCC
Q 011608 337 KMGLVVPDWAPQVEILG-HASVGGFL---SHCGWNSTLESIVNGVPLIVWPLYAEQKMNA-TMLAEELGVAVRPNEMPTE 411 (481)
Q Consensus 337 ~~~~~v~~~~pq~~lL~-~~~~~~~I---~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na-~~v~~~~G~g~~~~~~~~~ 411 (481)
.+++++.++.|+.+-|. +..+++++ ..+|.+|++|||+.|||+|.+|--.=.-..+ ..+ ..+|+.-.+-
T Consensus 341 ~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA----- 414 (468)
T PF13844_consen 341 PDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIA----- 414 (468)
T ss_dssp GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB------
T ss_pred hhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcC-----
Confidence 22456666666554332 22223444 4678899999999999999999543222222 333 5777765443
Q ss_pred CccCHHHH-HHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 011608 412 NLVKREEI-EMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEMSLQG 473 (481)
Q Consensus 412 ~~~~~~~l-~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 473 (481)
-++++- ..|+ ++-+|.+ ++ ++++++++..+.+ +.-.+...+++.+|..++.
T Consensus 415 --~s~~eYv~~Av-~La~D~~---~l---~~lR~~Lr~~~~~--SpLfd~~~~ar~lE~a~~~ 466 (468)
T PF13844_consen 415 --DSEEEYVEIAV-RLATDPE---RL---RALRAKLRDRRSK--SPLFDPKRFARNLEAAYRQ 466 (468)
T ss_dssp --SSHHHHHHHHH-HHHH-HH---HH---HHHHHHHHHHHHH--SGGG-HHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHH-HHhCCHH---HH---HHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHHH
Confidence 244444 4455 5555644 32 3344444433333 3345666777777766554
No 105
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.57 E-value=0.0011 Score=66.48 Aligned_cols=95 Identities=15% Similarity=0.202 Sum_probs=64.2
Q ss_pred CCccccccCchhh---hhccccCCceeeecC----CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 338 MGLVVPDWAPQVE---ILGHASVGGFLSHCG----WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 338 ~~~~v~~~~pq~~---lL~~~~~~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
.++...+|+++.+ ++..+++.+||...- -++++||+++|+|+|+-.. ......+ ++.+.|..++
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i-~~~~~G~l~~---- 359 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIV-DNGGNGLLLS---- 359 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHh-cCCCcEEEeC----
Confidence 4677889999764 444444557765442 4589999999999998543 3355555 4555787765
Q ss_pred CCccCHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Q 011608 411 ENLVKREEIEMMVRRILVDKE-GQALRSRVKEL 442 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~~-~~~~r~~a~~l 442 (481)
..-+.++++++|.+++.|+. ...|++++++.
T Consensus 360 -~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~ 391 (407)
T cd04946 360 -KDPTPNELVSSLSKFIDNEEEYQTMREKAREK 391 (407)
T ss_pred -CCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 33578999999999998754 23344444443
No 106
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.49 E-value=0.0061 Score=60.59 Aligned_cols=82 Identities=13% Similarity=0.063 Sum_probs=57.2
Q ss_pred CCccccccCchhh---hhccccCCceeee----cCC-chhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccC
Q 011608 338 MGLVVPDWAPQVE---ILGHASVGGFLSH----CGW-NSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMP 409 (481)
Q Consensus 338 ~~~~v~~~~pq~~---lL~~~~~~~~I~H----gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 409 (481)
.++.+.+++|+.+ ++..++ ++|.- -|. .++.||+++|+|+|+.... .+...+ ++-..|..+.
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aD--v~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l~--- 326 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLAD--LVVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHLA--- 326 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCC--EEEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEEe---
Confidence 3677778888654 577777 55542 343 5778999999999997653 234444 4545676442
Q ss_pred CCCccCHHHHHHHHHHHhcCCc
Q 011608 410 TENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 410 ~~~~~~~~~l~~al~~vl~~~~ 431 (481)
...+.+++.++|.+++.|++
T Consensus 327 --~~~d~~~la~~I~~ll~d~~ 346 (380)
T PRK15484 327 --EPMTSDSIISDINRTLADPE 346 (380)
T ss_pred --CCCCHHHHHHHHHHHHcCHH
Confidence 33489999999999998875
No 107
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.40 E-value=0.012 Score=56.53 Aligned_cols=108 Identities=21% Similarity=0.272 Sum_probs=65.2
Q ss_pred hhccccCCceeeecCCchhHHHHHcCcceeecc-cccchhhhHHHHHHhhceeEecccc-C-------CCCccCHHHHHH
Q 011608 351 ILGHASVGGFLSHCGWNSTLESIVNGVPLIVWP-LYAEQKMNATMLAEELGVAVRPNEM-P-------TENLVKREEIEM 421 (481)
Q Consensus 351 lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~g~~~~~~-~-------~~~~~~~~~l~~ 421 (481)
++..++ +.+.-+| .-+.|+..+|+|||+.= ...=-++.+++++ +....--.|.+ + -++..+++.|.+
T Consensus 261 a~~~aD--~al~aSG-T~tLE~aL~g~P~Vv~Yk~~~it~~iak~lv-k~~yisLpNIi~~~~ivPEliq~~~~pe~la~ 336 (381)
T COG0763 261 AFAAAD--AALAASG-TATLEAALAGTPMVVAYKVKPITYFIAKRLV-KLPYVSLPNILAGREIVPELIQEDCTPENLAR 336 (381)
T ss_pred HHHHhh--HHHHhcc-HHHHHHHHhCCCEEEEEeccHHHHHHHHHhc-cCCcccchHHhcCCccchHHHhhhcCHHHHHH
Confidence 555666 4444444 35789999999999841 1112234455543 32222111211 0 025688999999
Q ss_pred HHHHHhcCC-chHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 011608 422 MVRRILVDK-EGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQ 466 (481)
Q Consensus 422 al~~vl~~~-~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 466 (481)
++.+++.|+ +-+.+++...++++. ++.++++..+++.+.+.
T Consensus 337 ~l~~ll~~~~~~~~~~~~~~~l~~~----l~~~~~~e~aA~~vl~~ 378 (381)
T COG0763 337 ALEELLLNGDRREALKEKFRELHQY----LREDPASEIAAQAVLEL 378 (381)
T ss_pred HHHHHhcChHhHHHHHHHHHHHHHH----HcCCcHHHHHHHHHHHH
Confidence 999999987 345677777777777 66655655555555443
No 108
>PLN02949 transferase, transferring glycosyl groups
Probab=97.36 E-value=0.22 Score=50.75 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=50.8
Q ss_pred CCccccccCchhh---hhccccCCceee---ecCCc-hhHHHHHcCcceeecccccchhhhHHHHHH-hhc-eeEecccc
Q 011608 338 MGLVVPDWAPQVE---ILGHASVGGFLS---HCGWN-STLESIVNGVPLIVWPLYAEQKMNATMLAE-ELG-VAVRPNEM 408 (481)
Q Consensus 338 ~~~~v~~~~pq~~---lL~~~~~~~~I~---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~-~~G-~g~~~~~~ 408 (481)
+++...+++|+.+ +|..++ ++|+ +=|+| ++.||+++|+|.|+....+--. ..+.+ ..| .|...
T Consensus 335 ~~V~f~g~v~~~el~~ll~~a~--~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~--- 406 (463)
T PLN02949 335 GDVEFHKNVSYRDLVRLLGGAV--AGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA--- 406 (463)
T ss_pred CcEEEeCCCCHHHHHHHHHhCc--EEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC---
Confidence 3677789988654 566766 5652 23444 7999999999999986543100 11100 112 23221
Q ss_pred CCCCccCHHHHHHHHHHHhcCC
Q 011608 409 PTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 409 ~~~~~~~~~~l~~al~~vl~~~ 430 (481)
. +.++++++|.+++.++
T Consensus 407 ---~--~~~~la~ai~~ll~~~ 423 (463)
T PLN02949 407 ---T--TVEEYADAILEVLRMR 423 (463)
T ss_pred ---C--CHHHHHHHHHHHHhCC
Confidence 2 7899999999999853
No 109
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.34 E-value=0.17 Score=52.94 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=50.4
Q ss_pred ccccccCchh-hhhccccCCceee---ecC-CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCcc
Q 011608 340 LVVPDWAPQV-EILGHASVGGFLS---HCG-WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLV 414 (481)
Q Consensus 340 ~~v~~~~pq~-~lL~~~~~~~~I~---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~ 414 (481)
+...++.++. ++++.++ +||. +=| .++++||+++|+|+|+.-..+... + ..-+-|. +. -
T Consensus 603 V~FLG~~dd~~~lyasaD--VFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~g~nGl-l~-------~ 666 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RSFPNCL-TY-------K 666 (794)
T ss_pred EEecCCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-eecCCeE-ec-------C
Confidence 4455666654 4787777 5664 223 458999999999999987765321 2 2222232 21 2
Q ss_pred CHHHHHHHHHHHhcCCc
Q 011608 415 KREEIEMMVRRILVDKE 431 (481)
Q Consensus 415 ~~~~l~~al~~vl~~~~ 431 (481)
+.+++.++|.++|.++.
T Consensus 667 D~EafAeAI~~LLsd~~ 683 (794)
T PLN02501 667 TSEDFVAKVKEALANEP 683 (794)
T ss_pred CHHHHHHHHHHHHhCch
Confidence 68999999999998764
No 110
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.31 E-value=0.026 Score=55.72 Aligned_cols=96 Identities=15% Similarity=0.125 Sum_probs=64.6
Q ss_pred CccccccCch-hhhhccccCCceeee--cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccC
Q 011608 339 GLVVPDWAPQ-VEILGHASVGGFLSH--CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVK 415 (481)
Q Consensus 339 ~~~v~~~~pq-~~lL~~~~~~~~I~H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~ 415 (481)
++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+ +.-..|..++. -+
T Consensus 262 ~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~------~d 331 (372)
T cd04949 262 YVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPK------GD 331 (372)
T ss_pred eEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCC------Cc
Confidence 5666666655 457888885445554 33458999999999999965431 133344 45567777642 47
Q ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHH
Q 011608 416 REEIEMMVRRILVDKE-GQALRSRVKELKH 444 (481)
Q Consensus 416 ~~~l~~al~~vl~~~~-~~~~r~~a~~l~~ 444 (481)
.+++.++|.+++.|+. ...+.+++++..+
T Consensus 332 ~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 361 (372)
T cd04949 332 IEALAEAIIELLNDPKLLQKFSEAAYENAE 361 (372)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 9999999999998854 4556666655543
No 111
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.26 E-value=0.0019 Score=63.39 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=81.4
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccC
Q 011608 267 IYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWA 346 (481)
Q Consensus 267 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~ 346 (481)
.++..|+... ......+++++++.+.+++++-.++ ..+.+.+ ....++.+.+++
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~-----------------------~~~~l~~-~~~~~V~~~g~~ 250 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGP-----------------------ELDRLRA-KAGPNVTFLGRV 250 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECCh-----------------------hHHHHHh-hcCCCEEEecCC
Confidence 3455676532 3447778888888776655542111 1122222 223589889999
Q ss_pred chh---hhhccccCCceeeecCCc-hhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHH
Q 011608 347 PQV---EILGHASVGGFLSHCGWN-STLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMM 422 (481)
Q Consensus 347 pq~---~lL~~~~~~~~I~HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~a 422 (481)
|+. +++..+++-++-+.-|+| ++.||+++|+|+|+....+ ....+ ++-+.|..++. -+.++++++
T Consensus 251 ~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~------~~~~~la~~ 319 (351)
T cd03804 251 SDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEE------QTVESLAAA 319 (351)
T ss_pred CHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCC------CCHHHHHHH
Confidence 985 467777743332344443 6789999999999976533 33344 45567877642 378899999
Q ss_pred HHHHhcCC
Q 011608 423 VRRILVDK 430 (481)
Q Consensus 423 l~~vl~~~ 430 (481)
|.++++|+
T Consensus 320 i~~l~~~~ 327 (351)
T cd03804 320 VERFEKNE 327 (351)
T ss_pred HHHHHhCc
Confidence 99999886
No 112
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0028 Score=50.89 Aligned_cols=60 Identities=30% Similarity=0.266 Sum_probs=45.5
Q ss_pred ccCchh-hhhccccCCceeeecCCchhHHHHHcCcceeecccc--------cchhhhHHHHHHhhceeEecc
Q 011608 344 DWAPQV-EILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLY--------AEQKMNATMLAEELGVAVRPN 406 (481)
Q Consensus 344 ~~~pq~-~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~--------~DQ~~na~~v~~~~G~g~~~~ 406 (481)
++.+-. .+-..++ .+|+|+|.||+..++..++|.|++|=- .+|-..|..++ +.+.=+...
T Consensus 54 ~~~~kiQsli~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~s 122 (161)
T COG5017 54 DKEEKIQSLIHDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACS 122 (161)
T ss_pred chHHHHHHHhhcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEc
Confidence 344543 3444555 999999999999999999999999954 36888888885 666665544
No 113
>PLN02316 synthase/transferase
Probab=97.18 E-value=0.56 Score=51.87 Aligned_cols=102 Identities=9% Similarity=-0.060 Sum_probs=56.3
Q ss_pred hhhccccCCceeee---cC-CchhHHHHHcCcceeeccccc--chhhhHH----H--HHHhhceeEeccccCCCCccCHH
Q 011608 350 EILGHASVGGFLSH---CG-WNSTLESIVNGVPLIVWPLYA--EQKMNAT----M--LAEELGVAVRPNEMPTENLVKRE 417 (481)
Q Consensus 350 ~lL~~~~~~~~I~H---gG-~~s~~eal~~GvP~v~~P~~~--DQ~~na~----~--v~~~~G~g~~~~~~~~~~~~~~~ 417 (481)
.+++.++ +|+.- =| -.+.+||+++|+|.|+-...+ |.-.... + ....-+-|...+ ..+++
T Consensus 915 ~iyaaAD--iflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~------~~d~~ 986 (1036)
T PLN02316 915 LIYAGAD--FILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFD------GADAA 986 (1036)
T ss_pred HHHHhCc--EEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeC------CCCHH
Confidence 4666666 67642 22 238999999999999864432 2221110 0 000124576654 34889
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 011608 418 EIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVA 464 (481)
Q Consensus 418 ~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 464 (481)
.|..+|.++|.+ |....+.+++..++++...=+-...+.+++
T Consensus 987 aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~ 1028 (1036)
T PLN02316 987 GVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYM 1028 (1036)
T ss_pred HHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 999999999964 223333344444444544444444444443
No 114
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.17 E-value=0.0019 Score=56.10 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=61.8
Q ss_pred CCccccccCch---hhhhccccCCceeee----cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 338 MGLVVPDWAPQ---VEILGHASVGGFLSH----CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 338 ~~~~v~~~~pq---~~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
.++.+.++.++ .+++..++ ++|+. |..+++.||+++|+|+|+.- ...+...+ ...+.|..++.
T Consensus 73 ~~i~~~~~~~~~~l~~~~~~~d--i~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~-~~~~~g~~~~~--- 142 (172)
T PF00534_consen 73 ENIIFLGYVPDDELDELYKSSD--IFVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEII-NDGVNGFLFDP--- 142 (172)
T ss_dssp TTEEEEESHSHHHHHHHHHHTS--EEEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHS-GTTTSEEEEST---
T ss_pred ccccccccccccccccccccce--eccccccccccccccccccccccceeecc----ccCCceee-ccccceEEeCC---
Confidence 36777788873 45777766 67766 56679999999999999744 44555555 46667888762
Q ss_pred CCccCHHHHHHHHHHHhcCCc-hHHHHHHHH
Q 011608 411 ENLVKREEIEMMVRRILVDKE-GQALRSRVK 440 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~~-~~~~r~~a~ 440 (481)
-+.+++.++|.+++.+++ .+.++++++
T Consensus 143 ---~~~~~l~~~i~~~l~~~~~~~~l~~~~~ 170 (172)
T PF00534_consen 143 ---NDIEELADAIEKLLNDPELRQKLGKNAR 170 (172)
T ss_dssp ---TSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 299999999999998864 233444443
No 115
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.10 E-value=0.35 Score=47.91 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=52.0
Q ss_pred CCCccccccCchhh---hhccccCCcee------eecCC-chhHHHHHcCcceeecccccchhhhHHHHHHhhceeEecc
Q 011608 337 KMGLVVPDWAPQVE---ILGHASVGGFL------SHCGW-NSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPN 406 (481)
Q Consensus 337 ~~~~~v~~~~pq~~---lL~~~~~~~~I------~HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~ 406 (481)
..|+...+++|+.+ .+.++++.++- +.++. +.+.|++++|+|+|+.++ ...+ +..+.+....
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~~~~~~~ 324 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYEDEVVLIA 324 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcCcEEEeC
Confidence 34898889998765 46667753322 23333 358999999999998763 2222 3333233322
Q ss_pred ccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 407 EMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 407 ~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
. +.+++.++|++++.++.
T Consensus 325 -----~--d~~~~~~ai~~~l~~~~ 342 (373)
T cd04950 325 -----D--DPEEFVAAIEKALLEDG 342 (373)
T ss_pred -----C--CHHHHHHHHHHHHhcCC
Confidence 2 79999999999876543
No 116
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.02 E-value=0.14 Score=52.65 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=56.1
Q ss_pred CCccccccCchhhhhccccCCceeee----cCCchhHHHHHcCcceeecccccchhhhHHHHHHhh------ceeEeccc
Q 011608 338 MGLVVPDWAPQVEILGHASVGGFLSH----CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEEL------GVAVRPNE 407 (481)
Q Consensus 338 ~~~~v~~~~pq~~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~------G~g~~~~~ 407 (481)
.++.+.+...-.+++..++ ++|.- |--+++.||+++|+|+|+- |.......+ ++. ..|..++.
T Consensus 354 ~~V~f~G~~~v~~~l~~aD--v~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 354 DNVKFTGFQNVKEYLPKLD--VLVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVVPP 426 (475)
T ss_pred CeEEEcCCccHHHHHHhCC--EEEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEECC
Confidence 4677767555677887777 45432 3346899999999999994 444444444 342 26766542
Q ss_pred cCCCCccCHHHHHHHHHHHhcCCc
Q 011608 408 MPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 408 ~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
.+.++++++|.+++.|+.
T Consensus 427 ------~d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 427 ------ADPEALARAILRLLKDPE 444 (475)
T ss_pred ------CCHHHHHHHHHHHhcCHH
Confidence 479999999999998865
No 117
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.00 E-value=0.056 Score=52.25 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=37.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTST 48 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~ 48 (481)
+|+++-....|++.-..++.++|+++. +.+|++++.+.+.+.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~ 43 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADI 43 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhh
Confidence 588888999999999999999999886 899999999866554
No 118
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=96.97 E-value=0.57 Score=48.08 Aligned_cols=77 Identities=17% Similarity=0.005 Sum_probs=48.9
Q ss_pred CccccccCchh---hhhccccCCceee---ecCCc-hhHHHHHcCcceeecccccchhhhHHHHHHhh------ceeEec
Q 011608 339 GLVVPDWAPQV---EILGHASVGGFLS---HCGWN-STLESIVNGVPLIVWPLYAEQKMNATMLAEEL------GVAVRP 405 (481)
Q Consensus 339 ~~~v~~~~pq~---~lL~~~~~~~~I~---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~------G~g~~~ 405 (481)
++.+....+.. .++..++ ++|. +-|.| +.+||+++|+|.|+....+ ....| ++- +.|..+
T Consensus 347 ~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~ 419 (473)
T TIGR02095 347 NVRVIIGYDEALAHLIYAGAD--FILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLF 419 (473)
T ss_pred cEEEEEcCCHHHHHHHHHhCC--EEEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEe
Confidence 45444444443 4666666 5553 22444 7899999999999865532 22222 222 677776
Q ss_pred cccCCCCccCHHHHHHHHHHHhc
Q 011608 406 NEMPTENLVKREEIEMMVRRILV 428 (481)
Q Consensus 406 ~~~~~~~~~~~~~l~~al~~vl~ 428 (481)
+. -+++++.++|.+++.
T Consensus 420 ~~------~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 420 EE------YDPGALLAALSRALR 436 (473)
T ss_pred CC------CCHHHHHHHHHHHHH
Confidence 42 478999999999886
No 119
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.91 E-value=0.002 Score=53.44 Aligned_cols=79 Identities=30% Similarity=0.345 Sum_probs=48.3
Q ss_pred CCccccccCch-hhhhccccCCceeee--cC-CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCc
Q 011608 338 MGLVVPDWAPQ-VEILGHASVGGFLSH--CG-WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENL 413 (481)
Q Consensus 338 ~~~~v~~~~pq-~~lL~~~~~~~~I~H--gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 413 (481)
.++...+|++. .+++..+++.+..+. -| -+++.|++++|+|+|+.+.. ....+ +..+.|..+. .
T Consensus 53 ~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~~-----~- 120 (135)
T PF13692_consen 53 PNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLVA-----N- 120 (135)
T ss_dssp CTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE-T-----T-
T ss_pred CCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEEC-----C-
Confidence 48888899864 457888887555442 23 48999999999999997771 22232 4567777653 2
Q ss_pred cCHHHHHHHHHHHhcC
Q 011608 414 VKREEIEMMVRRILVD 429 (481)
Q Consensus 414 ~~~~~l~~al~~vl~~ 429 (481)
+.+++.++|.++++|
T Consensus 121 -~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 121 -DPEELAEAIERLLND 135 (135)
T ss_dssp --HHHHHHHHHHHHH-
T ss_pred -CHHHHHHHHHHHhcC
Confidence 899999999999865
No 120
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.81 E-value=0.31 Score=50.20 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=62.2
Q ss_pred CCccccccCchhhhhccccCCceee---ecCC-chhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCc
Q 011608 338 MGLVVPDWAPQVEILGHASVGGFLS---HCGW-NSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENL 413 (481)
Q Consensus 338 ~~~~v~~~~pq~~lL~~~~~~~~I~---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 413 (481)
+++...++.+..+++..++ +||. .=|+ .+++||+++|+|+|+.-..+ .....+ ++-.-|..++.- . +.
T Consensus 376 ~~V~f~G~~~~~~~~~~ad--v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~-~-~~ 447 (500)
T TIGR02918 376 DYIHLKGHRNLSEVYKDYE--LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPID-E-EE 447 (500)
T ss_pred CeEEEcCCCCHHHHHHhCC--EEEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCC-c-cc
Confidence 3567778888888898887 5554 3344 58999999999999976531 233344 343456555410 0 11
Q ss_pred cC----HHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011608 414 VK----REEIEMMVRRILVDKEGQALRSRVKELK 443 (481)
Q Consensus 414 ~~----~~~l~~al~~vl~~~~~~~~r~~a~~l~ 443 (481)
-+ .+.++++|.+++.++....|.+++++.+
T Consensus 448 ~d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a 481 (500)
T TIGR02918 448 DDEDQIITALAEKIVEYFNSNDIDAFHEYSYQIA 481 (500)
T ss_pred cchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 12 7889999999995444445555555543
No 121
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.78 E-value=0.027 Score=56.89 Aligned_cols=176 Identities=22% Similarity=0.284 Sum_probs=105.0
Q ss_pred CCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhh-----cC
Q 011608 263 TESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRN-----AK 337 (481)
Q Consensus 263 ~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~ 337 (481)
+.-+||.+|--....+|+.+..-++-|++.+..++|.++.+.- |+ ..|..-. ..
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~--------------ge-------~rf~ty~~~~Gl~p 815 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV--------------GE-------QRFRTYAEQLGLEP 815 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc--------------ch-------HHHHHHHHHhCCCc
Confidence 3448999998878889999999999999999999999988743 22 2332211 22
Q ss_pred CCccccccCchh-----hhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCC
Q 011608 338 MGLVVPDWAPQV-----EILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTEN 412 (481)
Q Consensus 338 ~~~~v~~~~pq~-----~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 412 (481)
+.+++.+-+.-. ..|....++-+.|. |+.|.++.|+.|||||.+|.-----..|.-+.-.+|+|-.+-.
T Consensus 816 ~riifs~va~k~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak----- 889 (966)
T KOG4626|consen 816 DRIIFSPVAAKEEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK----- 889 (966)
T ss_pred cceeeccccchHHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh-----
Confidence 244443333221 22333333445554 6889999999999999999865444444333357888875431
Q ss_pred ccCHHHH-HHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011608 413 LVKREEI-EMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEMSLQGLMA 476 (481)
Q Consensus 413 ~~~~~~l-~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 476 (481)
++++- .-+| ++=.|.. ..++++.+.+.+ +-++...+..++...++......-+
T Consensus 890 --~~eEY~~iaV-~Latd~~------~L~~lr~~l~~~--r~~splfd~~q~~~~LE~~y~~MW~ 943 (966)
T KOG4626|consen 890 --NREEYVQIAV-RLATDKE------YLKKLRAKLRKA--RASSPLFDTKQYAKGLERLYLQMWK 943 (966)
T ss_pred --hHHHHHHHHH-HhhcCHH------HHHHHHHHHHHH--hcCCCccCchHHHHHHHHHHHHHHH
Confidence 44444 4444 3433432 233444444332 2455555666666666665444333
No 122
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.66 E-value=0.24 Score=44.37 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=24.7
Q ss_pred CccCHHHHHHHHHHHHhCCCCeEEEEe
Q 011608 15 GMGHFIPVLELGKRFATQNDFQVTIFV 41 (481)
Q Consensus 15 ~~GHi~P~l~La~~L~~r~Gh~Vt~~~ 41 (481)
..|+-.....|++.|.++ ||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~-g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARR-GHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHc-CCeEEEEE
Confidence 679999999999999999 99999988
No 123
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.064 Score=53.99 Aligned_cols=177 Identities=15% Similarity=0.149 Sum_probs=108.9
Q ss_pred CCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhh-----c
Q 011608 262 PTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRN-----A 336 (481)
Q Consensus 262 ~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~ 336 (481)
+++.+||+||+-.....++.+..-+.-++..+.-++|..+++.+ ...-..+.+.- .
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~-------------------~~~~~~l~~la~~~Gv~ 487 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD-------------------AEINARLRDLAEREGVD 487 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc-------------------HHHHHHHHHHHHHcCCC
Confidence 45569999999999999999988888888889999999876432 01111222221 1
Q ss_pred CCCccccccCchh---hhhccccCCceee---ecCCchhHHHHHcCcceeecccccchhh--hHHHHHHhhceeEecccc
Q 011608 337 KMGLVVPDWAPQV---EILGHASVGGFLS---HCGWNSTLESIVNGVPLIVWPLYAEQKM--NATMLAEELGVAVRPNEM 408 (481)
Q Consensus 337 ~~~~~v~~~~pq~---~lL~~~~~~~~I~---HgG~~s~~eal~~GvP~v~~P~~~DQ~~--na~~v~~~~G~g~~~~~~ 408 (481)
..++++.+-.|.. +=+..++ +|.. -||+.|+.|+|..|||+|..+ |+||. |+.-++..+|+--.+-
T Consensus 488 ~eRL~f~p~~~~~~h~a~~~iAD--lvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA-- 561 (620)
T COG3914 488 SERLRFLPPAPNEDHRARYGIAD--LVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVA-- 561 (620)
T ss_pred hhheeecCCCCCHHHHHhhchhh--eeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhc--
Confidence 2244555555433 3333444 5654 599999999999999999875 77764 3333333445443332
Q ss_pred CCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011608 409 PTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEMSLQGLMA 476 (481)
Q Consensus 409 ~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 476 (481)
.-.++-++.+|. +.+++ +...+.+.+++. .+.-+.--+...|-++++..++++.+
T Consensus 562 ----~s~~dYV~~av~--~g~dr-----al~q~~r~~l~~--~r~tspL~d~~~far~le~~y~~M~~ 616 (620)
T COG3914 562 ----DSRADYVEKAVA--FGSDR-----ALRQQVRAELKR--SRQTSPLFDPKAFARKLETLYWGMWS 616 (620)
T ss_pred ----CCHHHHHHHHHH--hcccH-----HHHHhhHHHHHh--ccccCcccCHHHHHHHHHHHHHHHHH
Confidence 235677777773 33332 334444444332 22333456677888888887777654
No 124
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.62 E-value=0.0097 Score=57.97 Aligned_cols=108 Identities=19% Similarity=0.301 Sum_probs=73.4
Q ss_pred CccccccCchhhhhcc--ccCCceeee-------cCC------chhHHHHHcCcceeecccccchhhhHHHHHHhhceeE
Q 011608 339 GLVVPDWAPQVEILGH--ASVGGFLSH-------CGW------NSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAV 403 (481)
Q Consensus 339 ~~~v~~~~pq~~lL~~--~~~~~~I~H-------gG~------~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~ 403 (481)
|+...+|+|+.++..+ .+.+++... +.+ +-+.+.+++|+|+|+. ++...+..| ++.++|.
T Consensus 208 ~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~~G~ 282 (333)
T PRK09814 208 NISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENGLGF 282 (333)
T ss_pred CeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCCceE
Confidence 7888899998775432 133333221 111 1267789999999985 456677777 7999999
Q ss_pred eccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 011608 404 RPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVA 464 (481)
Q Consensus 404 ~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 464 (481)
.++ +.+++.+++.++. ++....|++|++++++. ++.|.--..++.+++
T Consensus 283 ~v~--------~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~----~~~g~~~~~~~~~~~ 330 (333)
T PRK09814 283 VVD--------SLEELPEIIDNIT-EEEYQEMVENVKKISKL----LRNGYFTKKALVDAI 330 (333)
T ss_pred EeC--------CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHH----HhcchhHHHHHHHHH
Confidence 974 5678999998753 45566799999999999 455555444444443
No 125
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=96.35 E-value=1.5 Score=44.96 Aligned_cols=71 Identities=15% Similarity=0.050 Sum_probs=43.8
Q ss_pred hhhccccCCceeee---cCC-chhHHHHHcCcceeeccccc--chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHH
Q 011608 350 EILGHASVGGFLSH---CGW-NSTLESIVNGVPLIVWPLYA--EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMV 423 (481)
Q Consensus 350 ~lL~~~~~~~~I~H---gG~-~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al 423 (481)
.++..++ +++.- -|+ .+.+||+++|+|.|+....+ |.-.+...- ..-|.|..++. -+.+++.++|
T Consensus 366 ~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~------~~~~~l~~~i 436 (476)
T cd03791 366 LIYAGAD--FFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEG------YNADALLAAL 436 (476)
T ss_pred HHHHhCC--EEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCC------CCHHHHHHHH
Confidence 3566666 55532 223 37899999999999866542 221111110 12347877653 3789999999
Q ss_pred HHHhcC
Q 011608 424 RRILVD 429 (481)
Q Consensus 424 ~~vl~~ 429 (481)
.+++..
T Consensus 437 ~~~l~~ 442 (476)
T cd03791 437 RRALAL 442 (476)
T ss_pred HHHHHH
Confidence 998853
No 126
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.32 E-value=1.4 Score=44.25 Aligned_cols=32 Identities=16% Similarity=-0.005 Sum_probs=25.9
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 12 ASPGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 12 ~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
.....|-=.-.+.|++.|.++ ||+|.++..-.
T Consensus 9 ~l~~GGaeri~~~L~~~l~~~-G~~~~i~~~~~ 40 (405)
T PRK10125 9 RLAEGGAAGVALDLHQRALQQ-GLASHFVYGYG 40 (405)
T ss_pred eecCCchhHHHHHHHHHHHhc-CCeEEEEEecC
Confidence 345556666788999999999 99999998873
No 127
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.40 E-value=0.016 Score=44.79 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=43.6
Q ss_pred chhhhhhhccCCCCcEEEEEeCCCCCC---Ch--HHHHHHHHHHHhCCCcEEEEEcCCC
Q 011608 251 NSSLLEWLDMQPTESVIYVSFGGGGTL---SA--NQMIEVAWGLELSQQRFIWVVRPPM 304 (481)
Q Consensus 251 ~~~~~~~l~~~~~~~vv~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~ 304 (481)
+..+..|+...+.++.|+||+||.... .. ..+..++++++.++..++..+....
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 445667998888899999999997442 22 4688999999999999999997653
No 128
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.24 E-value=0.42 Score=39.56 Aligned_cols=103 Identities=15% Similarity=0.216 Sum_probs=64.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHH
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKI 86 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (481)
+|++++.....| ...+++.|.++ ||+|++++........ ... .++.+..++.. . . ..
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~-g~~V~ii~~~~~~~~~----~~~---~~i~~~~~~~~----~-k---~~---- 57 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKR-GYDVHIITPRNDYEKY----EII---EGIKVIRLPSP----R-K---SP---- 57 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHC-CCEEEEEEcCCCchhh----hHh---CCeEEEEecCC----C-C---cc----
Confidence 467777666666 45789999999 9999999996443221 111 36777777422 1 0 01
Q ss_pred HHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCc-h--HHHHHHHhC-CceEEEec
Q 011608 87 IFMMRESLPALRSSISTLKPRPTALFADLFGT-E--AFQIADEFE-MLKYVYIA 136 (481)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~-~--~~~~A~~~g-iP~v~~~~ 136 (481)
..... .. .+...+++. +||+|.+..... + +..+++..+ +|++....
T Consensus 58 ~~~~~-~~-~l~k~ik~~--~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 58 LNYIK-YF-RLRKIIKKE--KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHHHH-HH-HHHHHhccC--CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 11111 22 667788887 999998766544 2 334667788 88875443
No 129
>PHA01633 putative glycosyl transferase group 1
Probab=95.14 E-value=0.48 Score=45.85 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=52.3
Q ss_pred Ccccc---ccCchh---hhhccccCCceeee---cCC-chhHHHHHcCcceeeccc------ccch------hhhHHHHH
Q 011608 339 GLVVP---DWAPQV---EILGHASVGGFLSH---CGW-NSTLESIVNGVPLIVWPL------YAEQ------KMNATMLA 396 (481)
Q Consensus 339 ~~~v~---~~~pq~---~lL~~~~~~~~I~H---gG~-~s~~eal~~GvP~v~~P~------~~DQ------~~na~~v~ 396 (481)
++... +++++. +++..++ +||.- =|+ .+++||+++|+|+|+--. .+|+ .++....+
T Consensus 202 ~V~f~g~~G~~~~~dl~~~y~~aD--ifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~ 279 (335)
T PHA01633 202 NVHFVAEFGHNSREYIFAFYGAMD--FTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYY 279 (335)
T ss_pred cEEEEecCCCCCHHHHHHHHHhCC--EEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhc
Confidence 56555 455544 5566666 66652 343 478899999999998533 3443 33333322
Q ss_pred H-hhceeEeccccCCCCccCHHHHHHHHHHHhcC
Q 011608 397 E-ELGVAVRPNEMPTENLVKREEIEMMVRRILVD 429 (481)
Q Consensus 397 ~-~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~ 429 (481)
. ..|.|..+ ...++++++++|.+++..
T Consensus 280 ~~~~g~g~~~------~~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 280 DKEHGQKWKI------HKFQIEDMANAIILAFEL 307 (335)
T ss_pred CcccCceeee------cCCCHHHHHHHHHHHHhc
Confidence 1 34666665 347999999999998644
No 130
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.52 E-value=6.8 Score=40.56 Aligned_cols=62 Identities=19% Similarity=0.089 Sum_probs=43.0
Q ss_pred CCccccccCch-hhhhccccCCceee---ecC-CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEecc
Q 011608 338 MGLVVPDWAPQ-VEILGHASVGGFLS---HCG-WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPN 406 (481)
Q Consensus 338 ~~~~v~~~~pq-~~lL~~~~~~~~I~---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~ 406 (481)
+++.+.+|..+ ..+|..++ +||. .-| -+++.||+++|+|+|+... ..+...| ++-..|..++
T Consensus 455 d~V~FlG~~~Dv~~~LaaAD--VfVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp 521 (578)
T PRK15490 455 ERILFVGASRDVGYWLQKMN--VFILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILD 521 (578)
T ss_pred CcEEECCChhhHHHHHHhCC--EEEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEEC
Confidence 46777787654 45677777 6775 344 4599999999999998765 3445555 4656777765
No 131
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.32 E-value=1.3 Score=44.62 Aligned_cols=80 Identities=24% Similarity=0.293 Sum_probs=56.2
Q ss_pred hhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEe-ccccCCCCccCHHHHHHHHHHHhc
Q 011608 350 EILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVR-PNEMPTENLVKREEIEMMVRRILV 428 (481)
Q Consensus 350 ~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~-~~~~~~~~~~~~~~l~~al~~vl~ 428 (481)
.++.+++ ++|..= .-++.-|+..|||.+.+++ |.-..+ .+ +.+|..-. .+. +.++.++|.+.+.+++.
T Consensus 323 ~iIs~~d--l~ig~R-lHa~I~a~~~gvP~i~i~Y--~~K~~~-~~-~~lg~~~~~~~~----~~l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 323 KILGACE--LTVGTR-LHSAIISMNFGTPAIAINY--EHKSAG-IM-QQLGLPEMAIDI----RHLLDGSLQAMVADTLG 391 (426)
T ss_pred HHHhhCC--EEEEec-chHHHHHHHcCCCEEEeee--hHHHHH-HH-HHcCCccEEech----hhCCHHHHHHHHHHHHh
Confidence 6787776 777533 3357789999999999999 444433 33 68888755 453 77899999999999998
Q ss_pred CCchHHHHHHHHHH
Q 011608 429 DKEGQALRSRVKEL 442 (481)
Q Consensus 429 ~~~~~~~r~~a~~l 442 (481)
|.+ .+++..++.
T Consensus 392 ~r~--~~~~~l~~~ 403 (426)
T PRK10017 392 QLP--ALNARLAEA 403 (426)
T ss_pred CHH--HHHHHHHHH
Confidence 743 144444333
No 132
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.16 E-value=0.1 Score=44.02 Aligned_cols=97 Identities=18% Similarity=0.122 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHHHHHHhhHHHHHH
Q 011608 21 PVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIFMMRESLPALRSS 100 (481)
Q Consensus 21 P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (481)
-+..|+++|.++ ||+|+++++......-+ .. . .++.+..++....... ...... ...+..+
T Consensus 6 ~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~--~~--~--~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~ 66 (160)
T PF13579_consen 6 YVRELARALAAR-GHEVTVVTPQPDPEDDE--EE--E--DGVRVHRLPLPRRPWP-LRLLRF-----------LRRLRRL 66 (160)
T ss_dssp HHHHHHHHHHHT-T-EEEEEEE---GGG-S--EE--E--TTEEEEEE--S-SSSG-GGHCCH-----------HHHHHHH
T ss_pred HHHHHHHHHHHC-CCEEEEEecCCCCcccc--cc--c--CCceEEeccCCccchh-hhhHHH-----------HHHHHHH
Confidence 467899999999 99999999875444210 11 1 2566776664332211 000111 1233344
Q ss_pred HhhcCCCCcEEEEcCCCch-HHHHHH-HhCCceEEEec
Q 011608 101 ISTLKPRPTALFADLFGTE-AFQIAD-EFEMLKYVYIA 136 (481)
Q Consensus 101 l~~~~~~~D~VI~D~~~~~-~~~~A~-~~giP~v~~~~ 136 (481)
+.....+||+|.+.....+ ...+++ ..++|++....
T Consensus 67 l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 67 LAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp CHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 4111339999987663322 334455 88999987543
No 133
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.74 E-value=6.2 Score=37.19 Aligned_cols=108 Identities=13% Similarity=0.075 Sum_probs=72.7
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHHHHH
Q 011608 12 ASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIFMMR 91 (481)
Q Consensus 12 ~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 91 (481)
=.+..-|+.=|..+-++|.++ ||+|.+-+-+... +.+.+..+ |+.+..+..... ......+.....
T Consensus 6 DI~n~~hvhfFk~lI~elekk-G~ev~iT~rd~~~--v~~LLd~y----gf~~~~Igk~g~-------~tl~~Kl~~~~e 71 (346)
T COG1817 6 DIGNPPHVHFFKNLIWELEKK-GHEVLITCRDFGV--VTELLDLY----GFPYKSIGKHGG-------VTLKEKLLESAE 71 (346)
T ss_pred EcCCcchhhHHHHHHHHHHhC-CeEEEEEEeecCc--HHHHHHHh----CCCeEeecccCC-------ccHHHHHHHHHH
Confidence 345567888999999999999 9999888776322 11112222 566666654221 222323333332
Q ss_pred HhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEech
Q 011608 92 ESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIAS 137 (481)
Q Consensus 92 ~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~ 137 (481)
..-.+.+++.+. +||+.+. -.+..+..+|--+|+|.+++.-+
T Consensus 72 -R~~~L~ki~~~~--kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 72 -RVYKLSKIIAEF--KPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred -HHHHHHHHHhhc--CCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 345677788888 9999998 55777888999999999987644
No 134
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=93.49 E-value=0.41 Score=42.43 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=30.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTV 49 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~ 49 (481)
|||++.-=-+. +---+..|+++|++. ||+|+++.|...++..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~-g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSAL-GHDVVVVAPDSEQSGT 42 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTT-SSEEEEEEESSSTTTS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhc-CCeEEEEeCCCCCcCc
Confidence 56777665444 455678899999887 8999999999776553
No 135
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.40 E-value=0.64 Score=35.40 Aligned_cols=82 Identities=18% Similarity=0.142 Sum_probs=48.9
Q ss_pred ecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhc-eeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 011608 363 HCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELG-VAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKE 441 (481)
Q Consensus 363 HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~ 441 (481)
+|-..-+.|++++|+|+|.-+. ......+ ..| -++.. . +.+++.++|..+++|+. ..++-+++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~--~~~~~~~~~------~--~~~el~~~i~~ll~~~~--~~~~ia~~ 72 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF--EDGEHIITY------N--DPEELAEKIEYLLENPE--ERRRIAKN 72 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc--CCCCeEEEE------C--CHHHHHHHHHHHHCCHH--HHHHHHHH
Confidence 4555689999999999998766 2222222 223 23332 2 89999999999999865 12323333
Q ss_pred HHHHHHHHhhcCCChHHHHHHHH
Q 011608 442 LKHSAKKASTKGGSSYNALSQVA 464 (481)
Q Consensus 442 l~~~~~~~~~~~g~~~~~~~~~~ 464 (481)
-++. +...-+....+++++
T Consensus 73 a~~~----v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 73 ARER----VLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHH----HHHhCCHHHHHHHHH
Confidence 3333 333455555555443
No 136
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=93.17 E-value=8 Score=37.70 Aligned_cols=106 Identities=10% Similarity=0.019 Sum_probs=66.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCceE-EEecCCCCCCCCCCCCccHHH
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLFN-IVSLPPVDISALLDADASIVI 84 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~ 84 (481)
||+++-..+.|++.-..++.++|+++. +.+|++++.+.+.+. ++..+ .++ ++.++..... ....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l----~~~~p---~vd~vi~~~~~~~~-------~~~~ 66 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPI----LSENP---DINALYGLDRKKAK-------AGER 66 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHH----HhcCC---CccEEEEeChhhhc-------chHH
Confidence 588899999999999999999999876 789999999866554 22233 443 3344321100 0000
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEE
Q 011608 85 KIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYV 133 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~ 133 (481)
.+... -.+...|++. ++|++|.=........++...|.|.-+
T Consensus 67 ~~~~~-----~~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 67 KLANQ-----FHLIKVLRAN--RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HHHHH-----HHHHHHHHhC--CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 11111 1123345555 999998544444456778888888655
No 137
>PHA01630 putative group 1 glycosyl transferase
Probab=92.90 E-value=2.2 Score=41.46 Aligned_cols=76 Identities=12% Similarity=0.087 Sum_probs=45.1
Q ss_pred cCchhh---hhccccCCcee--e-ecC-CchhHHHHHcCcceeeccccc--ch---hhhHHHHHHh-----------hce
Q 011608 345 WAPQVE---ILGHASVGGFL--S-HCG-WNSTLESIVNGVPLIVWPLYA--EQ---KMNATMLAEE-----------LGV 401 (481)
Q Consensus 345 ~~pq~~---lL~~~~~~~~I--~-HgG-~~s~~eal~~GvP~v~~P~~~--DQ---~~na~~v~~~-----------~G~ 401 (481)
++|+.+ ++..++ +|| + ..| -.++.||+++|+|+|+.-..+ |. ..|+..+ +. .++
T Consensus 197 ~v~~~~l~~~y~~aD--v~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 197 PLPDDDIYSLFAGCD--ILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIHV 273 (331)
T ss_pred cCCHHHHHHHHHhCC--EEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCccc
Confidence 366544 566766 454 2 233 458999999999999976533 22 1222111 10 234
Q ss_pred eEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 402 AVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 402 g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
|..++ .+.+++.+++.++|.|.
T Consensus 274 G~~v~-------~~~~~~~~~ii~~l~~~ 295 (331)
T PHA01630 274 GYFLD-------PDIEDAYQKLLEALANW 295 (331)
T ss_pred ccccC-------CCHHHHHHHHHHHHhCC
Confidence 55443 26778888888888774
No 138
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=92.21 E-value=10 Score=35.63 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=36.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTST 48 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~ 48 (481)
+|+++-..+.|++.-+.++.++|+++. +-+|++++.+.+.+.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l 43 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPL 43 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHH
Confidence 588899999999999999999999984 589999999966654
No 139
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=91.69 E-value=2.1 Score=37.01 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=61.0
Q ss_pred cCCCccCHHHHHHHHHHH-HhCCCCeEEEEecCCCchhhhhh--ccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHH
Q 011608 12 ASPGMGHFIPVLELGKRF-ATQNDFQVTIFVVATDTSTVQSQ--LRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIF 88 (481)
Q Consensus 12 ~~p~~GHi~P~l~La~~L-~~r~Gh~Vt~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 88 (481)
-.++.||+.=++.|.+.+ .++..++..+++....... .+. ++.... ....+..++.... ...........
T Consensus 4 v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~-~k~~~~~~~~~-~~~~~~~~~r~r~-----v~q~~~~~~~~ 76 (170)
T PF08660_consen 4 VLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSR-SKAEQLEKSSS-KRHKILEIPRARE-----VGQSYLTSIFT 76 (170)
T ss_pred EEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccH-HHHHHHHHhcc-ccceeeccceEEE-----echhhHhhHHH
Confidence 347889999999999999 4441444444444432222 111 222110 0113444443211 11122223333
Q ss_pred HHHHhhHHHHHHHhhcCCCCcEEEEcCCC--chHHHHHHHh------CCceEEEech
Q 011608 89 MMRESLPALRSSISTLKPRPTALFADLFG--TEAFQIADEF------EMLKYVYIAS 137 (481)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~~D~VI~D~~~--~~~~~~A~~~------giP~v~~~~~ 137 (481)
+.......+.-+.+ . +||+||+.--. ...+.+|..+ |.++|.+.+.
T Consensus 77 ~l~~~~~~~~il~r-~--rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 77 TLRAFLQSLRILRR-E--RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred HHHHHHHHHHHHHH-h--CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 33333333333333 3 89999977433 3355788888 9999987653
No 140
>PRK14098 glycogen synthase; Provisional
Probab=91.11 E-value=4.4 Score=41.70 Aligned_cols=79 Identities=10% Similarity=0.005 Sum_probs=50.6
Q ss_pred CCccccccCchh---hhhccccCCceeeec---CC-chhHHHHHcCcceeeccccc--chhhhHHHHHHhhceeEecccc
Q 011608 338 MGLVVPDWAPQV---EILGHASVGGFLSHC---GW-NSTLESIVNGVPLIVWPLYA--EQKMNATMLAEELGVAVRPNEM 408 (481)
Q Consensus 338 ~~~~v~~~~pq~---~lL~~~~~~~~I~Hg---G~-~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~~ 408 (481)
.++.+.++.+.. .+++.++ +|+.-. |. .+.+||+++|+|.|+....+ |...+ .. ++-+.|...+.
T Consensus 362 ~~V~~~g~~~~~~~~~~~a~aD--i~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~~~- 435 (489)
T PRK14098 362 EQVSVQTEFTDAFFHLAIAGLD--MLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIFHD- 435 (489)
T ss_pred CCEEEEEecCHHHHHHHHHhCC--EEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEeCC-
Confidence 367777777764 5677766 666432 22 37789999999988876533 22111 11 22356766642
Q ss_pred CCCCccCHHHHHHHHHHHh
Q 011608 409 PTENLVKREEIEMMVRRIL 427 (481)
Q Consensus 409 ~~~~~~~~~~l~~al~~vl 427 (481)
-+++++.++|.+++
T Consensus 436 -----~d~~~la~ai~~~l 449 (489)
T PRK14098 436 -----YTPEALVAKLGEAL 449 (489)
T ss_pred -----CCHHHHHHHHHHHH
Confidence 47899999999876
No 141
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=89.58 E-value=6.4 Score=33.98 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=50.0
Q ss_pred hCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHHHH---HHhhHHHHHHHhhcCCC
Q 011608 31 TQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIFMM---RESLPALRSSISTLKPR 107 (481)
Q Consensus 31 ~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 107 (481)
++ ||+|++++....... + ++++.+.+....... +...-....+.... ......+.++-++ .-.
T Consensus 1 q~-gh~v~fl~~~~~~~~--------~--~GV~~~~y~~~~~~~--~~~~~~~~~~e~~~~rg~av~~a~~~L~~~-Gf~ 66 (171)
T PF12000_consen 1 QR-GHEVVFLTERKRPPI--------P--PGVRVVRYRPPRGPT--PGTHPYVRDFEAAVLRGQAVARAARQLRAQ-GFV 66 (171)
T ss_pred CC-CCEEEEEecCCCCCC--------C--CCcEEEEeCCCCCCC--CCCCcccccHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 35 999999996533332 1 367777665422111 11111111122111 1222333333322 338
Q ss_pred CcEEEEcCCCchHHHHHHHh-CCceEEEe
Q 011608 108 PTALFADLFGTEAFQIADEF-EMLKYVYI 135 (481)
Q Consensus 108 ~D~VI~D~~~~~~~~~A~~~-giP~v~~~ 135 (481)
||+||+..-.-.++-+-+.+ ++|.+.++
T Consensus 67 PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 67 PDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 99999998666677788888 89988865
No 142
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=88.47 E-value=3.2 Score=35.32 Aligned_cols=101 Identities=13% Similarity=0.021 Sum_probs=51.4
Q ss_pred CCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHHHHHHh
Q 011608 14 PGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIFMMRES 93 (481)
Q Consensus 14 p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (481)
...|=-.-...|+++|.++ ||+|+++++...... . .. ............. ......+ ..
T Consensus 10 ~~GG~e~~~~~l~~~l~~~-G~~v~v~~~~~~~~~--------~--~~-~~~~~~~~~~~~~----~~~~~~~-----~~ 68 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKR-GHEVTVVSPGVKDPI--------E--EE-LVKIFVKIPYPIR----KRFLRSF-----FF 68 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHT-T-EEEEEESS-TTS---------S--ST-EEEE---TT-SST----SS--HHH-----HH
T ss_pred CCChHHHHHHHHHHHHHHC-CCEEEEEEcCCCccc--------h--hh-ccceeeeeecccc----cccchhH-----HH
Confidence 3456667889999999999 999999988733321 1 11 1111111000000 0111111 12
Q ss_pred hHHHHHHHhhcCCCCcEEEEcCC-CchHHHHHHHhCCceEEEechh
Q 011608 94 LPALRSSISTLKPRPTALFADLF-GTEAFQIADEFEMLKYVYIASN 138 (481)
Q Consensus 94 ~~~~~~~l~~~~~~~D~VI~D~~-~~~~~~~A~~~giP~v~~~~~~ 138 (481)
...+...+++. ++|+|-+... ..+....+-. ++|.+......
T Consensus 69 ~~~~~~~i~~~--~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~ 111 (177)
T PF13439_consen 69 MRRLRRLIKKE--KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGP 111 (177)
T ss_dssp HHHHHHHHHHH--T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HH
T ss_pred HHHHHHHHHHc--CCCeEEecccchhHHHHHhcc-CCCEEEEeCCC
Confidence 34566778877 9999954432 2333333333 99988866544
No 143
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=88.39 E-value=5.2 Score=32.11 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=37.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
+|++.+.++..|.....-++..|.++ |++|+++...-..+.+.+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~-G~~V~~lg~~~~~~~l~~~ 45 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDA-GFEVIDLGVDVPPEEIVEA 45 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHH
Confidence 58999999999999999999999999 9999998866444444333
No 144
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=88.24 E-value=4.6 Score=39.60 Aligned_cols=111 Identities=9% Similarity=0.031 Sum_probs=71.1
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCceE-EEecCCCCCCCCCCC
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLFN-IVSLPPVDISALLDA 78 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ 78 (481)
|++..++|+++-....|++.-..++.+.|+++. +.+|++++.+.+.+. ++..| .++ ++.++... .
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l----~~~~P---~id~vi~~~~~~---~--- 67 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPI----LSENP---EINALYGIKNKK---A--- 67 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHH----hccCC---CceEEEEecccc---c---
Confidence 888899999999999999999999999999886 889999999876654 22233 333 23333210 0
Q ss_pred CccHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEE
Q 011608 79 DASIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYV 133 (481)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~ 133 (481)
.....+.. ...+...|++. ++|++|.=........++...|.|..+
T Consensus 68 --~~~~~~~~-----~~~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 68 --GASEKIKN-----FFSLIKVLRAN--KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred --cHHHHHHH-----HHHHHHHHhhC--CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 00101111 11222345544 999998543333345567777887655
No 145
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=86.22 E-value=7.7 Score=35.92 Aligned_cols=42 Identities=19% Similarity=0.073 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
.+|||++.-=- .=|---+..|+++|.+. | +|+++.|...++.
T Consensus 4 ~~M~ILltNDD-Gi~a~Gi~aL~~~l~~~-g-~V~VvAP~~~~Sg 45 (257)
T PRK13932 4 KKPHILVCNDD-GIEGEGIHVLAASMKKI-G-RVTVVAPAEPHSG 45 (257)
T ss_pred CCCEEEEECCC-CCCCHHHHHHHHHHHhC-C-CEEEEcCCCCCCC
Confidence 46887766533 22335678899999988 7 7998888866554
No 146
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=84.73 E-value=8.2 Score=32.81 Aligned_cols=60 Identities=22% Similarity=0.357 Sum_probs=48.0
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCC
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPP 69 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 69 (481)
|....|+|.+.-.|+.|-..-.+.++..|.+. |+.|-=+.+++-.+. ....+|..+.+..
T Consensus 1 ~~~~~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~EVR~g--------GkR~GF~Ivdl~t 60 (179)
T COG1618 1 MIKMAMKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITPEVREG--------GKRIGFKIVDLAT 60 (179)
T ss_pred CCCcceEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEeeeeecC--------CeEeeeEEEEccC
Confidence 67788999999999999999999999999999 999986666643322 2224788888864
No 147
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=83.54 E-value=1.4 Score=45.62 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=63.0
Q ss_pred CccccccCc--h-hhhhccccCCceeeec---CCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCC
Q 011608 339 GLVVPDWAP--Q-VEILGHASVGGFLSHC---GWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTEN 412 (481)
Q Consensus 339 ~~~v~~~~p--q-~~lL~~~~~~~~I~Hg---G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 412 (481)
.+.+.++.+ + ..++.+.. ++|.=+ |.++.+||+.+|+|+| .+.....| ++..=|..++
T Consensus 410 ~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li~------ 473 (519)
T TIGR03713 410 RIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYIID------ 473 (519)
T ss_pred EEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEeC------
Confidence 566667666 2 45666666 787655 7889999999999999 44445555 4555565553
Q ss_pred ccCHHHHHHHHHHHhcCC-chHHHHHHHHHHHHH
Q 011608 413 LVKREEIEMMVRRILVDK-EGQALRSRVKELKHS 445 (481)
Q Consensus 413 ~~~~~~l~~al~~vl~~~-~~~~~r~~a~~l~~~ 445 (481)
+..+|.++|...|.+. .++.+...+-+.+.+
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~ 505 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNYSLAYSIKLIDD 505 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 7899999999999985 466666666555544
No 148
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.62 E-value=2.7 Score=39.24 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=51.2
Q ss_pred cccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHHHH--HHhhceeEeccccCCCCccCHHHHH
Q 011608 343 PDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATML--AEELGVAVRPNEMPTENLVKREEIE 420 (481)
Q Consensus 343 ~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v--~~~~G~g~~~~~~~~~~~~~~~~l~ 420 (481)
..|-...++|.+++ +.|--.|- .+-+++--|||+|.+|-.+-|+.-..-. -.-+|+.+.+-. -++..-.
T Consensus 300 lsqqsfadiLH~ad--aalgmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~------~~aq~a~ 370 (412)
T COG4370 300 LSQQSFADILHAAD--AALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR------PEAQAAA 370 (412)
T ss_pred EeHHHHHHHHHHHH--HHHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC------CchhhHH
Confidence 34445556666655 33333221 3445677899999999999997654332 233477766532 2333344
Q ss_pred HHHHHHhcCCchHHHHHHHHH
Q 011608 421 MMVRRILVDKEGQALRSRVKE 441 (481)
Q Consensus 421 ~al~~vl~~~~~~~~r~~a~~ 441 (481)
.+..++|.|+. +..++++
T Consensus 371 ~~~q~ll~dp~---r~~air~ 388 (412)
T COG4370 371 QAVQELLGDPQ---RLTAIRH 388 (412)
T ss_pred HHHHHHhcChH---HHHHHHh
Confidence 44555898876 5555553
No 149
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=81.49 E-value=14 Score=34.36 Aligned_cols=40 Identities=15% Similarity=0.010 Sum_probs=27.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
|||++.-=- .=|-.-+..|+++|... | +|+++.|...++.
T Consensus 1 M~ILlTNDD-Gi~apGi~aL~~al~~~-g-~V~VvAP~~eqSg 40 (266)
T PRK13934 1 MKILVTNDD-GVHSPGLRLLYEFVSPL-G-EVDVVAPETPKSA 40 (266)
T ss_pred CeEEEEcCC-CCCCHHHHHHHHHHHhC-C-cEEEEccCCCCcc
Confidence 455544432 22446688999999988 7 7999988866554
No 150
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=81.35 E-value=4.9 Score=33.32 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=40.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
+.+|++.+.++-+|-.-..-++..|.++ |++|+++...-..+.+.+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~-G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEA-GFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHH
Confidence 4689999999999999999999999999 9999999987555554444
No 151
>PLN02939 transferase, transferring glycosyl groups
Probab=79.77 E-value=47 Score=36.88 Aligned_cols=83 Identities=10% Similarity=0.007 Sum_probs=51.1
Q ss_pred CCccccccCchh---hhhccccCCceeee---cC-CchhHHHHHcCcceeeccccc--chhhh--HHHHHHhhceeEecc
Q 011608 338 MGLVVPDWAPQV---EILGHASVGGFLSH---CG-WNSTLESIVNGVPLIVWPLYA--EQKMN--ATMLAEELGVAVRPN 406 (481)
Q Consensus 338 ~~~~v~~~~pq~---~lL~~~~~~~~I~H---gG-~~s~~eal~~GvP~v~~P~~~--DQ~~n--a~~v~~~~G~g~~~~ 406 (481)
.++.+..+.+.. .+++.++ +||.- =| -.+.+||+++|+|.|+....+ |...+ ...+.+.-+-|...+
T Consensus 837 drV~FlG~~de~lah~IYAaAD--IFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~ 914 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASD--MFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL 914 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCC--EEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec
Confidence 357666777764 4677766 67742 22 348999999999999876543 22211 111111224565553
Q ss_pred ccCCCCccCHHHHHHHHHHHhc
Q 011608 407 EMPTENLVKREEIEMMVRRILV 428 (481)
Q Consensus 407 ~~~~~~~~~~~~l~~al~~vl~ 428 (481)
. -+++.+.++|.+++.
T Consensus 915 ~------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 915 T------PDEQGLNSALERAFN 930 (977)
T ss_pred C------CCHHHHHHHHHHHHH
Confidence 2 488899999988774
No 152
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=79.70 E-value=11 Score=36.26 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=41.8
Q ss_pred chhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhh----HHHHHHhhceeEecc
Q 011608 347 PQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMN----ATMLAEELGVAVRPN 406 (481)
Q Consensus 347 pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~n----a~~v~~~~G~g~~~~ 406 (481)
|+...|..++. ++||=-=.+.+.||+..|+|+.++|... +..- ...+ ++.|.-....
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEECC
Confidence 67888988885 7778778899999999999999999987 3221 1233 3556655544
No 153
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=79.06 E-value=11 Score=34.75 Aligned_cols=110 Identities=11% Similarity=0.102 Sum_probs=59.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCC--CCCCCCCCCCccHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPP--VDISALLDADASIV 83 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~ 83 (481)
|||++.- --.=|---+..|+++|. . +++|+++.|+..++.+...+.... -++...+.. ....+
T Consensus 1 mrILlTN-DDGi~a~Gi~aL~~al~-~-~~dV~VVAP~~~qSg~s~slTl~~---Plr~~~~~~~~~av~G--------- 65 (252)
T COG0496 1 MRILLTN-DDGIHAPGIRALARALR-E-GADVTVVAPDREQSGASHSLTLHE---PLRVRQVDNGAYAVNG--------- 65 (252)
T ss_pred CeEEEec-CCccCCHHHHHHHHHHh-h-CCCEEEEccCCCCccccccccccc---CceeeEeccceEEecC---------
Confidence 3444433 22234555678888888 7 899999999977665332222111 122222211 00111
Q ss_pred HHHHHHHHHh-hHHHHHHHhhcCCCCcEEEEc----------CCCchHHHH---HHHhCCceEEEech
Q 011608 84 IKIIFMMRES-LPALRSSISTLKPRPTALFAD----------LFGTEAFQI---ADEFEMLKYVYIAS 137 (481)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~l~~~~~~~D~VI~D----------~~~~~~~~~---A~~~giP~v~~~~~ 137 (481)
.-..| .-.+..++++. .||+||+. ..+++.+.+ |..+|||.|.++..
T Consensus 66 -----TPaDCV~lal~~l~~~~--~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 66 -----TPADCVILGLNELLKEP--RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred -----ChHHHHHHHHHHhccCC--CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 00111 23455556555 79999853 344444433 45589999988764
No 154
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=76.58 E-value=10 Score=38.61 Aligned_cols=102 Identities=17% Similarity=0.066 Sum_probs=62.9
Q ss_pred ccCchhh---hhccccCCceee---ecCCc-hhHHHHHcCcc----eeecccccchhhhHHHHHHhhceeEeccccCCCC
Q 011608 344 DWAPQVE---ILGHASVGGFLS---HCGWN-STLESIVNGVP----LIVWPLYAEQKMNATMLAEELGVAVRPNEMPTEN 412 (481)
Q Consensus 344 ~~~pq~~---lL~~~~~~~~I~---HgG~~-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 412 (481)
+.+|+.+ ++..++ +|+. +=|.| +..||+++|+| +|+--+.+- +..+ +-|+.+++
T Consensus 342 ~~~~~~el~aly~aaD--v~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~l----~~gllVnP----- 406 (456)
T TIGR02400 342 RSYDREELMALYRAAD--VGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQEL----NGALLVNP----- 406 (456)
T ss_pred CCCCHHHHHHHHHhCc--EEEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHHh----CCcEEECC-----
Confidence 3455654 455666 5664 44654 78899999999 665544432 2223 34666654
Q ss_pred ccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011608 413 LVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQC 467 (481)
Q Consensus 413 ~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 467 (481)
-+.+.++++|.++|+.+.. .-+++.+++++.+ .+ -+...-++++++++
T Consensus 407 -~d~~~lA~aI~~aL~~~~~-er~~r~~~~~~~v----~~-~~~~~W~~~~l~~l 454 (456)
T TIGR02400 407 -YDIDGMADAIARALTMPLE-EREERHRAMMDKL----RK-NDVQRWREDFLSDL 454 (456)
T ss_pred -CCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHH----hh-CCHHHHHHHHHHHh
Confidence 4789999999999986432 2555566666653 22 45555566666554
No 155
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=75.99 E-value=10 Score=38.75 Aligned_cols=73 Identities=25% Similarity=0.163 Sum_probs=45.7
Q ss_pred cccCchhh---hhccccCCceee---ecCCc-hhHHHHHcCcc----eeecccccchhhhHHHHHHhhceeEeccccCCC
Q 011608 343 PDWAPQVE---ILGHASVGGFLS---HCGWN-STLESIVNGVP----LIVWPLYAEQKMNATMLAEELGVAVRPNEMPTE 411 (481)
Q Consensus 343 ~~~~pq~~---lL~~~~~~~~I~---HgG~~-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 411 (481)
.+++++.+ ++..++ +||. +-|+| ++.||+++|+| +|+--+.+ . + +...-|+.+++
T Consensus 346 ~g~v~~~el~~~y~~aD--v~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~---~----~~~~~g~lv~p---- 411 (460)
T cd03788 346 YRSLPREELAALYRAAD--VALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-A---A----EELSGALLVNP---- 411 (460)
T ss_pred eCCCCHHHHHHHHHhcc--EEEeCccccccCcccceeEEEecCCCceEEEecccc-c---h----hhcCCCEEECC----
Confidence 36677654 466666 5553 44654 67899999999 44432222 1 1 11123555543
Q ss_pred CccCHHHHHHHHHHHhcCCc
Q 011608 412 NLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 412 ~~~~~~~l~~al~~vl~~~~ 431 (481)
-+.++++++|.+++.++.
T Consensus 412 --~d~~~la~ai~~~l~~~~ 429 (460)
T cd03788 412 --YDIDEVADAIHRALTMPL 429 (460)
T ss_pred --CCHHHHHHHHHHHHcCCH
Confidence 478999999999998653
No 156
>PRK14099 glycogen synthase; Provisional
Probab=75.60 E-value=52 Score=33.84 Aligned_cols=40 Identities=20% Similarity=0.122 Sum_probs=29.7
Q ss_pred CCcEEEEEcC---C---CccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 4 TKTHIALLAS---P---GMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 4 ~~~~vvl~~~---p---~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
++|+|++++. | +.|=-...-.|.++|+++ ||+|.++.|..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~-g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAH-GVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 4589999874 1 223344566788999999 99999999963
No 157
>PRK05973 replicative DNA helicase; Provisional
Probab=75.27 E-value=20 Score=32.90 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=38.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-+++..-|+.|-..=.++++....++ |..|.|++.|...+.+.++
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHHHHHH
Confidence 35667779999999999999999888 9999999999877665555
No 158
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=75.19 E-value=35 Score=32.23 Aligned_cols=113 Identities=14% Similarity=0.189 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh-------ccCCCCCCceEEEecCCCCCCCCC
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ-------LRNLPNPHLFNIVSLPPVDISALL 76 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~ 76 (481)
+..+|-+.-.|+.|--.-.-.|.+.|.++ ||+|-++.-.+.....--. +......+++-+.+++.....+.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~-G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG- 127 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRER-GHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG- 127 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHC-CcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh-
Confidence 44678889999999999999999999999 9999999876543221000 12222223555556654222211
Q ss_pred CCCccHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchH--HHHHHHhCCceEE
Q 011608 77 DADASIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEA--FQIADEFEMLKYV 133 (481)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~--~~~A~~~giP~v~ 133 (481)
. .........+++.. .+|+||.+-...+- ..+++...+=.++
T Consensus 128 ------------l-S~at~~~i~~ldAa--G~DvIIVETVGvGQsev~I~~~aDt~~~v 171 (323)
T COG1703 128 ------------L-SRATREAIKLLDAA--GYDVIIVETVGVGQSEVDIANMADTFLVV 171 (323)
T ss_pred ------------h-hHHHHHHHHHHHhc--CCCEEEEEecCCCcchhHHhhhcceEEEE
Confidence 1 12233455567777 99999999655442 3566655555444
No 159
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=75.01 E-value=29 Score=32.10 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=26.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTV 49 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~ 49 (481)
|||++.-=-+. |---+..|+++|+ . +|+|+++.|...++..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~-~-~~~V~VvAP~~~qSg~ 41 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLS-E-KHEVFVVAPDKERSAT 41 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHH-h-CCcEEEEccCCCCccc
Confidence 45555543322 3445778888886 4 5799999998666543
No 160
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=74.37 E-value=14 Score=35.54 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=37.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTST 48 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~ 48 (481)
|||+++-....|++.-..++.+.|+++. +.+|++++.+.+.+.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l 44 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQI 44 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHH
Confidence 6899999999999999999999999875 899999998855443
No 161
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=74.12 E-value=34 Score=31.64 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=26.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
|||++.-=-+. |---+..|+++|++ +|+|+++.|...++.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~--~~~V~VvAP~~~~Sg 40 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK--YHEVIIVAPENQRSA 40 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh--CCcEEEEccCCCCcc
Confidence 45555543222 33347888899964 579999998866654
No 162
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=74.03 E-value=41 Score=32.44 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=35.9
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 6 THIALLAS-PGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 6 ~~vvl~~~-p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
+||++++- ++-|-..-..++|-.|++. |..|.++++.+.++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~-g~kvLlvStDPAhsL 44 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES-GKKVLLVSTDPAHSL 44 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc-CCcEEEEEeCCCCch
Confidence 57888887 7789999999999999999 998888888877764
No 163
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=73.53 E-value=62 Score=32.80 Aligned_cols=93 Identities=9% Similarity=0.140 Sum_probs=62.5
Q ss_pred CCccc-cccCc-h-hhhhccccCCceeeecC--CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCC
Q 011608 338 MGLVV-PDWAP-Q-VEILGHASVGGFLSHCG--WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTEN 412 (481)
Q Consensus 338 ~~~~v-~~~~p-q-~~lL~~~~~~~~I~HgG--~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 412 (481)
.|+++ .++.+ + .+++..+.+-+-|+||. .+++.||+.+|+|++..=...... ..+ .. |-.. .
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i-~~---g~l~------~ 394 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFI-AS---ENIF------E 394 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccc-cC---Ccee------c
Confidence 35544 45566 3 67999999888888876 569999999999999865543221 233 23 3333 2
Q ss_pred ccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 011608 413 LVKREEIEMMVRRILVDKEGQALRSRVKELKHS 445 (481)
Q Consensus 413 ~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~ 445 (481)
.-+.+++.++|.++|.+++ .++++..+-++.
T Consensus 395 ~~~~~~m~~~i~~lL~d~~--~~~~~~~~q~~~ 425 (438)
T TIGR02919 395 HNEVDQLISKLKDLLNDPN--QFRELLEQQREH 425 (438)
T ss_pred CCCHHHHHHHHHHHhcCHH--HHHHHHHHHHHH
Confidence 2478999999999998874 155555444443
No 164
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=73.43 E-value=48 Score=36.49 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=60.6
Q ss_pred hhhccccCCceee---ecCCc-hhHHHHHcCcc---eeecccccchhhhHHHHHHhhc-eeEeccccCCCCccCHHHHHH
Q 011608 350 EILGHASVGGFLS---HCGWN-STLESIVNGVP---LIVWPLYAEQKMNATMLAEELG-VAVRPNEMPTENLVKREEIEM 421 (481)
Q Consensus 350 ~lL~~~~~~~~I~---HgG~~-s~~eal~~GvP---~v~~P~~~DQ~~na~~v~~~~G-~g~~~~~~~~~~~~~~~~l~~ 421 (481)
+++..++ +||. .-|.| +..|++++|+| +++++-++ ..+. .+| -|+.+++ .+.+++++
T Consensus 371 aly~~AD--vfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~----~l~~~allVnP------~D~~~lA~ 435 (797)
T PLN03063 371 ALYAITD--VMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQ----SLGAGALLVNP------WNITEVSS 435 (797)
T ss_pred HHHHhCC--EEEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchh----hhcCCeEEECC------CCHHHHHH
Confidence 5666666 5553 45777 66799999999 44444332 2221 234 4677764 48899999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 011608 422 MVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEMS 470 (481)
Q Consensus 422 al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 470 (481)
+|.++|+.+.. .-+++.+++.+.++ .-+...-++.|++.+.+.
T Consensus 436 AI~~aL~m~~~-er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 436 AIKEALNMSDE-ERETRHRHNFQYVK-----THSAQKWADDFMSELNDI 478 (797)
T ss_pred HHHHHHhCCHH-HHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHHH
Confidence 99999984321 13444555555532 234556666676666554
No 165
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=71.80 E-value=38 Score=33.02 Aligned_cols=104 Identities=11% Similarity=0.057 Sum_probs=65.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCceEE-EecCCCCCCCCCCCCccHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLFNI-VSLPPVDISALLDADASIV 83 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~ 83 (481)
|+|+++-..+.|++.-..++.+.|+++. +.+|++++.+.+.+.+ +..| .++- +.++.. .. .
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~----~~~P---~vd~vi~~~~~---~~-------~ 63 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLL----SRMP---EVNEAIPMPLG---HG-------A 63 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHH----hcCC---ccCEEEecccc---cc-------h
Confidence 5899999999999999999999999976 8999999988655543 3333 3432 222211 00 0
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEE
Q 011608 84 IKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYV 133 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~ 133 (481)
..+. ....+...|++. ++|++|.=....-...++...|+|.-+
T Consensus 64 ~~~~-----~~~~l~~~lr~~--~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 64 LEIG-----ERRRLGHSLREK--RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred hhhH-----HHHHHHHHHHhc--CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0010 011233445555 999988433344455667777887654
No 166
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=71.78 E-value=17 Score=32.19 Aligned_cols=42 Identities=31% Similarity=0.389 Sum_probs=32.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCch
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTS 47 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (481)
+++|.+-..|+-|-.+-|+.=|++|.++ |.+|.+..-+....
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~-G~DVViG~vethgR 46 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQ-GVDVVIGYVETHGR 46 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEE---TT-
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHC-CCCEEEEEecCCCc
Confidence 5899999999999999999999999999 99999988885543
No 167
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=71.50 E-value=36 Score=31.65 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=53.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIK 85 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 85 (481)
|+|+++. ++| . ...|++.|.++ ||+|+..+......... .... +...+ . ..+
T Consensus 1 m~ILvlG--GT~--e-gr~la~~L~~~-g~~v~~s~~t~~~~~~~---~~~g---~~~v~-~-----g~l---------- 52 (256)
T TIGR00715 1 MTVLLMG--GTV--D-SRAIAKGLIAQ-GIEILVTVTTSEGKHLY---PIHQ---ALTVH-T-----GAL---------- 52 (256)
T ss_pred CeEEEEe--chH--H-HHHHHHHHHhC-CCeEEEEEccCCccccc---cccC---CceEE-E-----CCC----------
Confidence 4666654 334 2 78899999999 99999888775433211 0000 00000 0 000
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCch------HHHHHHHhCCceEEEe
Q 011608 86 IIFMMRESLPALRSSISTLKPRPTALFADLFGTE------AFQIADEFEMLKYVYI 135 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~------~~~~A~~~giP~v~~~ 135 (481)
....+.+++++. ++|+||--...+. +..+|+++|||++.|.
T Consensus 53 -------~~~~l~~~l~~~--~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 53 -------DPQELREFLKRH--SIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred -------CHHHHHHHHHhc--CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 012355667776 8998873222221 3468999999999875
No 168
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=70.70 E-value=13 Score=29.77 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=37.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
.++++.+.+..-|-.-+..++..|.++ ||+|.++-.....+.+.+.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~-G~~v~~~d~~~~~~~l~~~ 46 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKA-GHEVDILDANVPPEELVEA 46 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHT-TBEEEEEESSB-HHHHHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHC-CCeEEEECCCCCHHHHHHH
Confidence 378999999999999999999999999 9999999666444444444
No 169
>PRK05595 replicative DNA helicase; Provisional
Probab=70.58 E-value=24 Score=35.84 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=35.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEecCCCchhhhhh
Q 011608 8 IALLASPGMGHFIPVLELGKRFA-TQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
+++..-|+.|-..=.+.+|..++ +. |+.|.|++.+.....+..+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~-g~~vl~fSlEms~~~l~~R 248 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALRE-GKSVAIFSLEMSKEQLAYK 248 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHc-CCcEEEEecCCCHHHHHHH
Confidence 56677799999999999998775 67 9999999999766555544
No 170
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=70.53 E-value=1.1e+02 Score=29.73 Aligned_cols=105 Identities=11% Similarity=0.056 Sum_probs=66.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCceEEEec-CCCCCCCCCCCCccH
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSL-PPVDISALLDADASI 82 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~ 82 (481)
.|+|+++-....|++.-..++-+.|+++. +.++++++.+.+.+.+.. .+ .++-+-. .. .. .+
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~----~p---~I~~vi~~~~---~~---~~--- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKL----NP---EIDKVIIIDK---KK---KG--- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhc----Ch---Hhhhhccccc---cc---cc---
Confidence 37899999999999999999999999986 699999999966654222 22 2221111 10 00 00
Q ss_pred HHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEE
Q 011608 83 VIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYV 133 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~ 133 (481)
..-.....+...+++. ++|+||.=...+-...++...++|.-.
T Consensus 65 ------~~~~~~~~l~~~lr~~--~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 ------LGLKERLALLRTLRKE--RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred ------cchHHHHHHHHHhhcc--CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 1111123344455555 899998544444455667677777654
No 171
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=70.09 E-value=21 Score=37.21 Aligned_cols=80 Identities=13% Similarity=0.012 Sum_probs=47.0
Q ss_pred chhhhhccccCCceee---ecCCc-hhHHHHHcCcceeeccccc-chhhhHHHHHHhh-ceeEeccccCC-CCccCHHHH
Q 011608 347 PQVEILGHASVGGFLS---HCGWN-STLESIVNGVPLIVWPLYA-EQKMNATMLAEEL-GVAVRPNEMPT-ENLVKREEI 419 (481)
Q Consensus 347 pq~~lL~~~~~~~~I~---HgG~~-s~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~~-G~g~~~~~~~~-~~~~~~~~l 419 (481)
+..+++..++ +||. +=|+| ++.||+++|+|+|+....+ ..+.. .+...- ..|+.+...+. .-.-+.++|
T Consensus 467 ~y~E~~~g~d--l~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~--E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCH--LGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME--EHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhce--EEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH--HHhccCCCceEEEecCCccchHHHHHHH
Confidence 4556776766 5555 44544 8999999999999987643 22221 221111 24665542111 112356888
Q ss_pred HHHHHHHhcCC
Q 011608 420 EMMVRRILVDK 430 (481)
Q Consensus 420 ~~al~~vl~~~ 430 (481)
.+++.+++..+
T Consensus 543 a~~m~~~~~~~ 553 (590)
T cd03793 543 TQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHhCCc
Confidence 88888888443
No 172
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=69.97 E-value=9 Score=30.86 Aligned_cols=38 Identities=13% Similarity=0.055 Sum_probs=26.5
Q ss_pred cEEEEEcCCCcc---CHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 6 THIALLASPGMG---HFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 6 ~~vvl~~~p~~G---Hi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
|+|+|+--|-.+ .-.-.++|..+-.+| ||+|.++.+..
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~R-Ghev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRR-GHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHT-T-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHC-CCEEEEEEcCc
Confidence 567777776555 345788999999999 99999998873
No 173
>PRK08506 replicative DNA helicase; Provisional
Probab=69.11 E-value=42 Score=34.43 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=37.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-+++..-|+.|-..=.+.+|....+. |+.|.|++.+.....+..+
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~-g~~V~~fSlEMs~~ql~~R 238 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQ-DKGVAFFSLEMPAEQLMLR 238 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhc-CCcEEEEeCcCCHHHHHHH
Confidence 36677779999999999999999888 9999999999776665554
No 174
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=68.62 E-value=34 Score=30.00 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=48.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhh-ccCCCCCCceEEEecCCCCCCCCCCCCccHHHH
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQ-LRNLPNPHLFNIVSLPPVDISALLDADASIVIK 85 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 85 (481)
++-+--.+.|-++-...|+++|.++. |+.|.+-++.+........ +.. .+...-+|. +.
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-----~v~~~~~P~----D~---------- 83 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD-----RVDVQYLPL----DF---------- 83 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG-----G-SEEE-------SS----------
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-----CeEEEEeCc----cC----------
Confidence 44445578899999999999999874 7887777765444332221 211 122222221 11
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCcEEE-EcCCCchHH-HHHHHhCCceEEEec
Q 011608 86 IIFMMRESLPALRSSISTLKPRPTALF-ADLFGTEAF-QIADEFEMLKYVYIA 136 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~D~VI-~D~~~~~~~-~~A~~~giP~v~~~~ 136 (481)
...+...++.+ +||++| .+.=.+... ..|++.|||++.+..
T Consensus 84 --------~~~~~rfl~~~--~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 --------PWAVRRFLDHW--RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp --------HHHHHHHHHHH----SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred --------HHHHHHHHHHh--CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 22455678888 999876 444344444 689999999998664
No 175
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=66.82 E-value=30 Score=31.85 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=27.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTV 49 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~ 49 (481)
|||++.- --.=|---+..|+++|++. | +|+++.|...++..
T Consensus 1 M~ILltN-DDGi~a~Gi~aL~~~l~~~-g-~V~VvAP~~~~Sg~ 41 (244)
T TIGR00087 1 MKILLTN-DDGIHSPGIRALYQALKEL-G-EVTVVAPARQRSGT 41 (244)
T ss_pred CeEEEEC-CCCCCCHhHHHHHHHHHhC-C-CEEEEeCCCCcccc
Confidence 4555443 2222334577899999998 8 89999988666543
No 176
>PRK06321 replicative DNA helicase; Provisional
Probab=65.56 E-value=47 Score=34.01 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=36.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFA-TQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-+++..-|+.|-..-.+.+|...+ +. |..|.|++-|.....+..+
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~-g~~v~~fSLEMs~~ql~~R 273 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQN-RLPVGIFSLEMTVDQLIHR 273 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhc-CCeEEEEeccCCHHHHHHH
Confidence 366777799999999999999886 46 8999999999766555444
No 177
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=64.35 E-value=1e+02 Score=27.18 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=63.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc-hhhhhh-ccCCCCCCceEEEecCCCCCCCCCCCCccHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDT-STVQSQ-LRNLPNPHLFNIVSLPPVDISALLDADASIV 83 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (481)
=.|.+++..+.|-....+.+|-+...+ |++|.++=.-... ..-+.. +...+ ++.++.......-. . .+.
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~-G~~V~ivQFlKg~~~~GE~~~l~~l~---~v~~~~~g~~~~~~--~--~~~- 93 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGH-GKKVGVVQFIKGAWSTGERNLLEFGG---GVEFHVMGTGFTWE--T--QDR- 93 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCCccCHHHHHhcCC---CcEEEECCCCCccc--C--CCc-
Confidence 368889999999999999999999999 9999998655432 111111 33333 67777776532111 1 111
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCc
Q 011608 84 IKIIFMMRESLPALRSSISTLKPRPTALFADLFGT 118 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~ 118 (481)
..-....+.......+.+.+- ++|+||-|-...
T Consensus 94 ~e~~~~~~~~~~~a~~~l~~~--~ydlvVLDEi~~ 126 (191)
T PRK05986 94 ERDIAAAREGWEEAKRMLADE--SYDLVVLDELTY 126 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 112233344445555566554 999999997544
No 178
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=63.57 E-value=53 Score=31.72 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=65.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCceE-EEecCCCCCCCCCCCCccHHH
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLFN-IVSLPPVDISALLDADASIVI 84 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~ 84 (481)
||+++-..+.|++.-..++.++|++.. +.+|++++.+.+... +...+ .++ ++.++.. ... .
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l----~~~~p---~id~v~~~~~~-------~~~---~ 63 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPL----LERMP---EIRQAIDMPLG-------HGA---L 63 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHH----HhcCc---hhceeeecCCc-------ccc---h
Confidence 588999999999999999999999876 889999998755443 33333 333 2222211 000 0
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEE
Q 011608 85 KIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYV 133 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~ 133 (481)
.+. ....+...+++. ++|++|.-........++...++|.-+
T Consensus 64 ~~~-----~~~~~~~~lr~~--~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 64 ELT-----ERRRLGRSLREE--RYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred hhh-----HHHHHHHHHhhc--CCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 010 111333445555 999999655555556667777887543
No 179
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=63.10 E-value=71 Score=32.16 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=36.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEecCCCchhhhhh
Q 011608 8 IALLASPGMGHFIPVLELGKRFA-TQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
+++..-|+.|-..-.+.+|..++ +. |+.|.|++.|.....+..+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~-g~~v~~fSlEm~~~~l~~R 241 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALRE-GKPVLFFSLEMSAEQLGER 241 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCCCHHHHHHH
Confidence 56777799999999999998887 67 9999999999766555444
No 180
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=63.07 E-value=12 Score=30.51 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=32.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
+||++.-.++.+=+. ...+.++|.++ |++|.++.++...+.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~-g~~v~vv~S~~A~~~ 41 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRA-GWEVRVVLSPSAERF 41 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTT-TSEEEEEESHHHHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhC-CCEEEEEECCcHHHH
Confidence 578888878776666 99999999999 999999999954443
No 181
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=62.66 E-value=98 Score=26.39 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=60.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc-hhhhhh-ccCCCCCCceEEEecCCCCCCCCCCCCccHHH
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDT-STVQSQ-LRNLPNPHLFNIVSLPPVDISALLDADASIVI 84 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (481)
-|.+++-++.|-....+.+|-+...+ |++|.|+=.-... ..-+.. +...+ ++.++.......-.. .+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~v~~vQFlKg~~~~gE~~~l~~l~---~v~~~~~g~~~~~~~----~~~~- 74 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH-GYRVGVVQFLKGGWKYGELKALERLP---NIEIHRMGRGFFWTT----ENDE- 74 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEEeCCCCccCHHHHHHhCC---CcEEEECCCCCccCC----CChH-
Confidence 36677888999999999999999999 9999995433221 110111 33443 677777664321111 1111
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCc
Q 011608 85 KIIFMMRESLPALRSSISTLKPRPTALFADLFGT 118 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~ 118 (481)
.-....+.......+.++.- ++|+||-|-+..
T Consensus 75 ~~~~~a~~~~~~a~~~~~~~--~~dLlVLDEi~~ 106 (159)
T cd00561 75 EDIAAAAEGWAFAKEAIASG--EYDLVILDEINY 106 (159)
T ss_pred HHHHHHHHHHHHHHHHHhcC--CCCEEEEechHh
Confidence 11222334445555566655 999999997554
No 182
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=62.63 E-value=22 Score=31.50 Aligned_cols=47 Identities=15% Similarity=0.006 Sum_probs=40.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
+-+|++.+.++.-|-....-++..|..+ |++|+++...-..+.+.+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~-G~~vi~LG~~vp~e~~v~~ 130 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRAN-GFDVIDLGRDVPIDTVVEK 130 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhC-CcEEEECCCCCCHHHHHHH
Confidence 4689999999999999999999999999 9999999988655555444
No 183
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=62.50 E-value=19 Score=29.02 Aligned_cols=44 Identities=11% Similarity=0.081 Sum_probs=37.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQS 51 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~ 51 (481)
||++.+.++..|-.-..-++..|... |++|+++......+.+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~-G~~vi~lG~~vp~e~~~~ 44 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDA-GFEVIYTGLRQTPEEIVE 44 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHH
Confidence 68999999999999999999999999 999999998744444333
No 184
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=62.27 E-value=23 Score=31.50 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=39.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
+.+|++.+.++..|-....-++..|.++ |++|+++...-..+.+.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~-G~~vi~lG~~~p~~~l~~~ 128 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEAN-GFEVIDLGRDVPPEEFVEA 128 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHH
Confidence 5799999999999999999999999999 9999999866444444443
No 185
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=61.05 E-value=66 Score=28.92 Aligned_cols=93 Identities=14% Similarity=0.091 Sum_probs=53.8
Q ss_pred CccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCC-------CCCceEEEecCCCCCCCCCCCCccHHHHHH
Q 011608 15 GMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLP-------NPHLFNIVSLPPVDISALLDADASIVIKII 87 (481)
Q Consensus 15 ~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 87 (481)
+.|--.--.+++.-+... ||+|++++++........+..... ....+.|.++....... ..
T Consensus 38 ~tGKSvLsqr~~YG~L~~-g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~-----------~~ 105 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMN-GYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNW-----------GR 105 (235)
T ss_pred CccHHHHHHHHHHHHHhC-CceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccccc-----------Ch
Confidence 345555566788888888 999999999965544444322221 11234444442211110 11
Q ss_pred HHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHH
Q 011608 88 FMMRESLPALRSSISTLKPRPTALFADLFGTEAF 121 (481)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~ 121 (481)
...+...+.+.+.++.+ +-|+||.|.+...+.
T Consensus 106 ~~~~~~L~~l~~~~k~~--~~dViIIDSls~~~~ 137 (235)
T COG2874 106 RSARKLLDLLLEFIKRW--EKDVIIIDSLSAFAT 137 (235)
T ss_pred HHHHHHHHHHHhhHHhh--cCCEEEEecccHHhh
Confidence 22233345556666677 899999998776544
No 186
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=60.88 E-value=94 Score=28.75 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=26.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTV 49 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~ 49 (481)
|||++.-=-+ =|---+..|+++|++. |+|+++.|...++..
T Consensus 1 M~ILlTNDDG-i~a~Gi~aL~~~l~~~--~~V~VvAP~~~qSg~ 41 (250)
T PRK00346 1 MRILLTNDDG-IHAPGIRALAEALREL--ADVTVVAPDRERSGA 41 (250)
T ss_pred CeEEEECCCC-CCChhHHHHHHHHHhC--CCEEEEeCCCCCcCC
Confidence 4555544322 2344577899999877 589999998666543
No 187
>PLN02470 acetolactate synthase
Probab=60.43 E-value=55 Score=34.59 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=23.8
Q ss_pred cCCceeeecCCc------hhHHHHHcCcceeecc
Q 011608 356 SVGGFLSHCGWN------STLESIVNGVPLIVWP 383 (481)
Q Consensus 356 ~~~~~I~HgG~~------s~~eal~~GvP~v~~P 383 (481)
..+++++|.|-| .+.+|...++|||++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 466888998855 7889999999999985
No 188
>PRK05636 replicative DNA helicase; Provisional
Probab=60.43 E-value=48 Score=34.25 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=35.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFA-TQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-+++..-|+.|-..=.+.+|...+ +. |..|.|++-|.....+..+
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~-g~~v~~fSlEMs~~ql~~R 312 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKH-NKASVIFSLEMSKSEIVMR 312 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEEeeCCHHHHHHH
Confidence 356777899999999999998776 56 8899999998766555444
No 189
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=60.41 E-value=1.5e+02 Score=27.67 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=49.9
Q ss_pred CCccccccCc---hhhhhccccCCceeee---cCCch-hHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 338 MGLVVPDWAP---QVEILGHASVGGFLSH---CGWNS-TLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 338 ~~~~v~~~~p---q~~lL~~~~~~~~I~H---gG~~s-~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
.++...++++ ...++..++ +++.- .|.|. +.||+++|+|.|.... ......+ ...+.|....
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~--~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~-~~~~~g~~~~---- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASAD--VFVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVV-EDGETGLLVP---- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCC--EEEeccccccchHHHHHHHhcCCcEEECCC----CChHHHh-cCCCceEecC----
Confidence 4566678888 234565565 45544 35554 5999999999865544 3233333 2332455322
Q ss_pred CCccCHHHHHHHHHHHhcCC
Q 011608 411 ENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~ 430 (481)
..+.+++.+++..++.+.
T Consensus 326 --~~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 326 --PGDVEELADALEQLLEDP 343 (381)
T ss_pred --CCCHHHHHHHHHHHhcCH
Confidence 127899999999998776
No 190
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=60.03 E-value=77 Score=31.94 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=52.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCC----chhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccH
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATD----TSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASI 82 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 82 (481)
++.++..+.. .+.+++.|.+- |-+|..+++... .+...+.+... .. .. ..+.++
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~el-Gmevv~~~t~~~~~~~~~~~~~~~~~~-----------~~----~v-~~~~dl 344 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLES-GADVPYVGTAIPRTAWGAEDKRWLEML-----------GV----EV-KYRASL 344 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHC-CCEEEEEecCCCCccccHHHHHHHHhc-----------CC----Cc-eeccCH
Confidence 5666665544 88899999999 999999877732 11111100000 00 00 000111
Q ss_pred HHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEe
Q 011608 83 VIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYI 135 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~ 135 (481)
. +.+ +.+++. +||++|... -...+|+++|||.+.+-
T Consensus 345 ~-----------~~~-~~l~~~--~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 345 E-----------DDM-EAVLEF--EPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred H-----------HHH-HHHhhC--CCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 0 111 455666 999999873 35568999999998743
No 191
>PRK05748 replicative DNA helicase; Provisional
Probab=59.42 E-value=79 Score=32.14 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=36.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFA-TQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-+++..-|+.|-..=.+.++...+ ++ |+.|.|++.+.....+..+
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~-g~~v~~fSlEms~~~l~~R 250 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKT-DKNVAIFSLEMGAESLVMR 250 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhC-CCeEEEEeCCCCHHHHHHH
Confidence 367777799999999999999876 56 8999999999776665554
No 192
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=59.24 E-value=1.1e+02 Score=31.41 Aligned_cols=93 Identities=15% Similarity=0.265 Sum_probs=61.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCC-------CCCceEEEecCCCCCCCCCCCC
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLP-------NPHLFNIVSLPPVDISALLDAD 79 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~ 79 (481)
-+++.--|+.|-..=.++++.+.+++ |..|.|++.++..+.+.++..... ....+.+..+....
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~-------- 335 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACAN-KERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPES-------- 335 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEccccc--------
Confidence 46777779999999999999999999 999999999988777665533221 00113333332100
Q ss_pred ccHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCc
Q 011608 80 ASIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGT 118 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~ 118 (481)
... +.....+.+.+++. ++++||.|....
T Consensus 336 ~~~--------~~~~~~i~~~i~~~--~~~~vvIDsi~~ 364 (484)
T TIGR02655 336 AGL--------EDHLQIIKSEIADF--KPARIAIDSLSA 364 (484)
T ss_pred CCh--------HHHHHHHHHHHHHc--CCCEEEEcCHHH
Confidence 001 22344555666776 999999997663
No 193
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=59.11 E-value=86 Score=29.02 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=32.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDT 46 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (481)
+++..-|+.|.......+|..+++. |++|-++...+..
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~-g~~vLlvd~D~~~ 40 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQ-GKKVLLVSTDPAH 40 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHC-CCCceEEeCCCcc
Confidence 3445568899999999999999999 9999999988654
No 194
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=58.38 E-value=1.2e+02 Score=25.94 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=22.7
Q ss_pred CCceeeecCCc------hhHHHHHcCcceeecc
Q 011608 357 VGGFLSHCGWN------STLESIVNGVPLIVWP 383 (481)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~v~~P 383 (481)
.+++++|+|-| .+.+|...++|||++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44788888855 7889999999999996
No 195
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=57.95 E-value=1.7e+02 Score=30.16 Aligned_cols=111 Identities=15% Similarity=0.100 Sum_probs=68.8
Q ss_pred cccccCchhh---hhccccCCceee--ecCCchh-HHHHHcCc----ceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 341 VVPDWAPQVE---ILGHASVGGFLS--HCGWNST-LESIVNGV----PLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 341 ~v~~~~pq~~---lL~~~~~~~~I~--HgG~~s~-~eal~~Gv----P~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
.+.+.+|+.+ ++.-++| ++|| .-|.|-+ .|.++++. |+|.=-+.| |. +.+.-++.+++
T Consensus 365 ~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa---~~l~~AllVNP--- 432 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA---VELKGALLTNP--- 432 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch---hhcCCCEEECC---
Confidence 4557777765 4555664 4444 4588855 49999987 444333222 21 24455777765
Q ss_pred CCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 011608 411 ENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEMSLQ 472 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 472 (481)
.+.++++++|.++|+.+..+ =++|.+++.+.++ .-+...=.+.|+.++....|
T Consensus 433 ---~d~~~~A~ai~~AL~m~~~E-r~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~~~~~ 485 (487)
T TIGR02398 433 ---YDPVRMDETIYVALAMPKAE-QQARMREMFDAVN-----YYDVQRWADEFLAAVSPQAQ 485 (487)
T ss_pred ---CCHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhhccc
Confidence 48999999999999876422 3555555555533 23555667777777766544
No 196
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=56.70 E-value=43 Score=31.24 Aligned_cols=42 Identities=21% Similarity=0.401 Sum_probs=32.8
Q ss_pred ccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeeccc
Q 011608 340 LVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPL 384 (481)
Q Consensus 340 ~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~ 384 (481)
+++.+-++-.+++.+++ .+||-.+ .+-.||+.+|+|++++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~--~VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSD--AVVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCC--EEEEECC-HHHHHHHHcCCceEEecC
Confidence 33446678788999988 7777765 378999999999999654
No 197
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=56.69 E-value=1.2e+02 Score=30.76 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEe
Q 011608 95 PALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYI 135 (481)
Q Consensus 95 ~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~ 135 (481)
..+.+.+++. +||++|.... ...+|+++|+|++.+.
T Consensus 367 ~e~~~~i~~~--~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 367 WHLRSLLFTE--PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHHhhc--CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 4556667777 9999998753 5678999999998654
No 198
>PRK12342 hypothetical protein; Provisional
Probab=56.28 E-value=1.6e+02 Score=27.29 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCCCcEEEEcCCCch------HHHHHHHhCCceEEEec
Q 011608 96 ALRSSISTLKPRPTALFADLFGTE------AFQIADEFEMLKYVYIA 136 (481)
Q Consensus 96 ~~~~~l~~~~~~~D~VI~D~~~~~------~~~~A~~~giP~v~~~~ 136 (481)
.+...+++. .||+|++.-.+.. +..+|+.+|+|++.+..
T Consensus 100 ~La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 100 ALAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 444556666 7999996543332 56899999999998654
No 199
>PHA02542 41 41 helicase; Provisional
Probab=56.23 E-value=20 Score=36.72 Aligned_cols=44 Identities=16% Similarity=0.285 Sum_probs=36.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
+++..-|+.|-..-.+.+|...++. |+.|.|++-+.....+..+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~-g~~Vl~fSLEM~~~ql~~R 236 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQ-GYNVLYISMEMAEEVIAKR 236 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEEeccCCHHHHHHH
Confidence 5667779999999999999999888 9999999988766554443
No 200
>PRK06849 hypothetical protein; Provisional
Probab=56.22 E-value=70 Score=31.73 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
++++|+++. |.....+.+++.|.++ ||+|+++...+
T Consensus 3 ~~~~VLI~G----~~~~~~l~iar~l~~~-G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITG----ARAPAALELARLFHNA-GHTVILADSLK 38 (389)
T ss_pred CCCEEEEeC----CCcHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 457888875 3444689999999999 99999997774
No 201
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=56.15 E-value=1.3e+02 Score=30.14 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=51.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh-ccCCCCCCceEEEecCCCCCCCCCCCCccHHHH
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ-LRNLPNPHLFNIVSLPPVDISALLDADASIVIK 85 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 85 (481)
+++++..+ +. .+.+++.|.+. |-+|..+++........+. ..... . .. ..+.. ..+.
T Consensus 282 kv~v~g~~--~~---~~~la~~L~el-Gmevv~~~t~~~~~~~~~~~~~~l~---~-----~~-~~v~~----~~~~--- 339 (416)
T cd01980 282 RVLVSGYE--GN---ELLVARLLIES-GAEVPYVSTSIPKTSLSAPDYEWLS---A-----LG-VEVRY----RKSL--- 339 (416)
T ss_pred eEEEECCC--ch---hHHHHHHHHHc-CCEEEEEecCCCChhhhHHHHHHHH---h-----cC-Ccccc----CCCH---
Confidence 55555444 33 56699999999 9999999887322111111 11110 0 00 00000 0011
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEe
Q 011608 86 IIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYI 135 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~ 135 (481)
....+.+++. +||++|.. +-+..+|+++|||.+.+.
T Consensus 340 ---------~~~~~~~~~~--~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 340 ---------EDDIAAVEEY--RPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred ---------HHHHHHHhhc--CCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 1113445566 99999977 336678999999998744
No 202
>PRK09165 replicative DNA helicase; Provisional
Probab=56.10 E-value=80 Score=32.61 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=35.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh---------------CCCCeEEEEecCCCchhhhhh
Q 011608 8 IALLASPGMGHFIPVLELGKRFAT---------------QNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~---------------r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
+++..-|+.|-..=.+.+|...+. . |..|.|++-|.....+..+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~-g~~vl~fSlEMs~~ql~~R 278 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVN-GGVVGFFSLEMSAEQLATR 278 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccC-CCeEEEEeCcCCHHHHHHH
Confidence 566777999999999999888864 3 6889999999777665554
No 203
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=56.04 E-value=23 Score=26.09 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=30.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEe
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFV 41 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~ 41 (481)
.-+|++..+...|..-+-.+|+.|.++ |+.|...=
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~-G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQ-GYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhC-CCEEEEEC
Confidence 568888889999999999999999999 99887553
No 204
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=55.87 E-value=1e+02 Score=27.99 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=34.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
+++...|+.|=..-.++++..+....|+.|.|++.+.....+..+
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHH
Confidence 556666888999999998887764338999999999776655554
No 205
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=55.49 E-value=37 Score=28.26 Aligned_cols=47 Identities=11% Similarity=0.076 Sum_probs=39.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhh
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQS 51 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~ 51 (481)
.+.||++.+.+.-||=.-..-+++.|++. |.+|.+.......+.+.+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~-GfeVi~~g~~~tp~e~v~ 57 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADA-GFEVINLGLFQTPEEAVR 57 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhC-CceEEecCCcCCHHHHHH
Confidence 47899999999999999999999999999 999999876644444333
No 206
>PRK08760 replicative DNA helicase; Provisional
Probab=55.26 E-value=78 Score=32.49 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=36.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFA-TQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-+++..-|+.|-..=.+.+|...+ +. |+.|.|++-|.....+..+
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~-g~~V~~fSlEMs~~ql~~R 276 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKS-KKGVAVFSMEMSASQLAMR 276 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhc-CCceEEEeccCCHHHHHHH
Confidence 366777799999999999999886 56 8999999999766655544
No 207
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=54.32 E-value=40 Score=28.88 Aligned_cols=45 Identities=7% Similarity=0.049 Sum_probs=29.1
Q ss_pred HHHhhHHHHHHHhhcCCCCcEEEEcCCCchHH--H-HHHH--h-CCceEEEec
Q 011608 90 MRESLPALRSSISTLKPRPTALFADLFGTEAF--Q-IADE--F-EMLKYVYIA 136 (481)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~--~-~A~~--~-giP~v~~~~ 136 (481)
.....+.+.++|++. +||+||+-..+...+ . +-++ + ++|.+.+.|
T Consensus 74 ~~~~~~~l~~~l~~~--~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 74 SRLFARRLIRLLREF--QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHHhhc--CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 344456788888888 999999887664433 2 2122 3 477776555
No 208
>PRK04328 hypothetical protein; Provisional
Probab=53.84 E-value=1.8e+02 Score=26.75 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=34.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-+++.--|+.|-..=.++++.+-.++ |..+.|++.+...+.+.+.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ee~~~~i~~~ 69 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALEEHPVQVRRN 69 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEeeCCHHHHHHH
Confidence 35666668889988888888776778 9999999998766655443
No 209
>PRK08006 replicative DNA helicase; Provisional
Probab=53.38 E-value=1.3e+02 Score=30.95 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=36.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFA-TQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-+++..-|+.|-..-.+.+|...+ +. |+.|.|++-|-....+..+
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~~-g~~V~~fSlEM~~~ql~~R 271 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAMLQ-DKPVLIFSLEMPGEQIMMR 271 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhc-CCeEEEEeccCCHHHHHHH
Confidence 366777799999999999998886 56 8999999999766555544
No 210
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=52.91 E-value=64 Score=32.59 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=36.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFAT-QNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~-r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-+++...|+.|-..=.+.++..++. . |+.|.|++.|.....+..+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~-g~~vl~~SlEm~~~~i~~R 242 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKE-GKPVAFFSLEMSAEQLAMR 242 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC-CCeEEEEeCcCCHHHHHHH
Confidence 3566777899999999999998764 6 8999999999776665544
No 211
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=52.23 E-value=38 Score=32.53 Aligned_cols=137 Identities=10% Similarity=-0.070 Sum_probs=72.3
Q ss_pred cEEE-EEeCCC--CCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCcc
Q 011608 265 SVIY-VSFGGG--GTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLV 341 (481)
Q Consensus 265 ~vv~-vs~GS~--~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~ 341 (481)
+.|. +..||. -.++.+.+.++++.+...+.++++..+++.+ ...-+.+.+.. .++.
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e-------------------~~~~~~i~~~~--~~~~ 237 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHE-------------------EQRAKRLAEGF--PYVE 237 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHH-------------------HHHHHHHHccC--Ccce
Confidence 3444 444443 3478888899999887667776554333211 00001111111 1122
Q ss_pred ccc--cCch-hhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHH
Q 011608 342 VPD--WAPQ-VEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREE 418 (481)
Q Consensus 342 v~~--~~pq-~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~ 418 (481)
+.+ .+.+ .+++.+++ +||+-- -|.++=|.+.|+|+|++=-..|...++-.- ....-.+... +.-.+++.++
T Consensus 238 l~g~~sL~elaali~~a~--l~I~nD-SGp~HlA~A~g~p~valfGpt~p~~~~p~~--~~~~~~~~~~-~cm~~I~~e~ 311 (322)
T PRK10964 238 VLPKLSLEQVARVLAGAK--AVVSVD-TGLSHLTAALDRPNITLYGPTDPGLIGGYG--KNQHACRSPG-KSMADLSAET 311 (322)
T ss_pred ecCCCCHHHHHHHHHhCC--EEEecC-CcHHHHHHHhCCCEEEEECCCCcccccCCC--CCceeecCCC-cccccCCHHH
Confidence 222 2344 56888877 899876 468899999999999852222211111100 0000001000 0115689999
Q ss_pred HHHHHHHHhc
Q 011608 419 IEMMVRRILV 428 (481)
Q Consensus 419 l~~al~~vl~ 428 (481)
+.++++++|.
T Consensus 312 V~~~~~~~l~ 321 (322)
T PRK10964 312 VFQKLETLIS 321 (322)
T ss_pred HHHHHHHHhh
Confidence 9999988763
No 212
>PRK08840 replicative DNA helicase; Provisional
Probab=51.91 E-value=1.4e+02 Score=30.61 Aligned_cols=45 Identities=27% Similarity=0.317 Sum_probs=36.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFA-TQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-+++..-|+.|-..-.+.+|...+ +. |+.|.|++-|-....+..+
T Consensus 219 LiviaarPg~GKTafalnia~~~a~~~-~~~v~~fSlEMs~~ql~~R 264 (464)
T PRK08840 219 LIIVAARPSMGKTTFAMNLCENAAMDQ-DKPVLIFSLEMPAEQLMMR 264 (464)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHhC-CCeEEEEeccCCHHHHHHH
Confidence 356677799999999999999986 56 8999999999766655544
No 213
>PRK07773 replicative DNA helicase; Validated
Probab=51.89 E-value=79 Score=35.38 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=36.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
+++..-|+.|-..-.+.+|...+.+.|..|.|++-+.....+..+
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R 264 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMR 264 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHH
Confidence 667777999999999999998864327899999999777665554
No 214
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=51.81 E-value=72 Score=31.91 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=49.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEec
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSL 67 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 67 (481)
+.-|+++-.-+.|-..-.-.||+.|.++ |+.|-+++...++..+..++..+..+.++.|+..
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKK-GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHc-CCceEEEecccCChHHHHHHHHHHHHcCCceecC
Confidence 3567788888999999999999999999 9999999999888877666555444446666655
No 215
>PRK06904 replicative DNA helicase; Validated
Probab=51.72 E-value=78 Score=32.43 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=36.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFA-TQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-|++..-|+.|-..=.+.+|...+ +. |+.|.|++-|-....+..+
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~-g~~Vl~fSlEMs~~ql~~R 268 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMAS-EKPVLVFSLEMPAEQIMMR 268 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhc-CCeEEEEeccCCHHHHHHH
Confidence 366777899999999999999876 46 8999999999776665544
No 216
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=51.60 E-value=1.2e+02 Score=28.17 Aligned_cols=101 Identities=15% Similarity=0.035 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhC-C-CCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHHHHHHhhHHH
Q 011608 20 IPVLELGKRFATQ-N-DFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIFMMRESLPAL 97 (481)
Q Consensus 20 ~P~l~La~~L~~r-~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (481)
--+.+|+++|.+. . |++|+++.|+..++.....+.... -+++..+... . . .-.-.. ..... -.+
T Consensus 14 ~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~---pl~~~~~~~~-~--y-av~GTP----aDCV~---lal 79 (261)
T PRK13931 14 PGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTH---PMMIAELGPR-R--F-AAEGSP----ADCVL---AAL 79 (261)
T ss_pred HhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCC---CeEEEEeCCC-e--E-EEcCch----HHHHH---HHH
Confidence 3456677777653 0 489999999866654333332221 2444443311 0 0 000011 11111 111
Q ss_pred HHHHhhcCCCCcEEEE----------cCCCchHHHH---HHHhCCceEEEec
Q 011608 98 RSSISTLKPRPTALFA----------DLFGTEAFQI---ADEFEMLKYVYIA 136 (481)
Q Consensus 98 ~~~l~~~~~~~D~VI~----------D~~~~~~~~~---A~~~giP~v~~~~ 136 (481)
..++.. .+||+||+ |.++++.+.+ |..+|||.+.++.
T Consensus 80 ~~~~~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 80 YDVMKD--APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHhcCC--CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 222321 38999995 4555554433 4557999998875
No 217
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=51.42 E-value=78 Score=26.97 Aligned_cols=101 Identities=16% Similarity=0.046 Sum_probs=55.7
Q ss_pred chhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchh
Q 011608 251 NSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDG 330 (481)
Q Consensus 251 ~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ 330 (481)
..++-+||.+.+ ..+++-|. ......+.++..+.+-+++-+++.... .+..
T Consensus 20 A~~lg~~La~~g---~~lv~Gg~-----~GlM~a~a~ga~~~gg~viGVlp~~l~---------------------~~~~ 70 (159)
T TIGR00725 20 AYRLGKELAKKG---HILINGGR-----TGVMEAVSKGAREAGGLVVGILPDEDF---------------------AGNP 70 (159)
T ss_pred HHHHHHHHHHCC---CEEEcCCc-----hhHHHHHHHHHHHCCCeEEEECChhhc---------------------cCCC
Confidence 456667777653 45565332 233456666666667777666643210 0000
Q ss_pred HHhhhcCCCcccccc-CchhhhhccccCCceeeecCCchhHH---HHHcCcceeecccc
Q 011608 331 FLTRNAKMGLVVPDW-APQVEILGHASVGGFLSHCGWNSTLE---SIVNGVPLIVWPLY 385 (481)
Q Consensus 331 ~~~~~~~~~~~v~~~-~pq~~lL~~~~~~~~I~HgG~~s~~e---al~~GvP~v~~P~~ 385 (481)
+. ...++.++ .+-..++-..+-.+++-=||.||..| ++.+++|+++++..
T Consensus 71 ~~-----~~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 71 YL-----TIKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred Cc-----eEEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 00 01122233 34445454444446667789998765 58899999998853
No 218
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=51.26 E-value=45 Score=29.98 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=40.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
.+-+|++.+.++..|-....-++..|..+ |++|+++...-..+.+.+.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~-G~~Vi~LG~~vp~e~~v~~ 134 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNN-GYEVIDLGVMVPIEKILEA 134 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhC-CCEEEECCCCCCHHHHHHH
Confidence 45799999999999999999999999999 9999999977544444444
No 219
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=50.96 E-value=97 Score=27.80 Aligned_cols=34 Identities=9% Similarity=0.226 Sum_probs=27.4
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEec
Q 011608 8 IALLAS-PGMGHFIPVLELGKRFATQNDFQVTIFVV 42 (481)
Q Consensus 8 vvl~~~-p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~ 42 (481)
+++.+. +..|-..-.+.|++.|+++ |++|.++=+
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~-g~~v~~~KP 36 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREA-GYSVAGYKP 36 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHc-CCceEEEee
Confidence 444443 5579999999999999999 999988753
No 220
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=50.86 E-value=39 Score=36.86 Aligned_cols=111 Identities=18% Similarity=0.064 Sum_probs=64.2
Q ss_pred ccccCchhh---hhccccCCceeee---cCCc-hhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCcc
Q 011608 342 VPDWAPQVE---ILGHASVGGFLSH---CGWN-STLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLV 414 (481)
Q Consensus 342 v~~~~pq~~---lL~~~~~~~~I~H---gG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~ 414 (481)
+.+++++.+ ++..++ +|+.- -|.| +..|++++|+|-...|+..+--.-+..+ .-|+.+++ -
T Consensus 346 ~~~~~~~~~l~~ly~~aD--v~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P------~ 413 (726)
T PRK14501 346 FYRSLPFEELVALYRAAD--VALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP------N 413 (726)
T ss_pred EeCCCCHHHHHHHHHhcc--EEEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC------C
Confidence 346677664 555566 55542 3544 7899999988643333333222222222 23677664 3
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 011608 415 KREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEMS 470 (481)
Q Consensus 415 ~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 470 (481)
+.+.++++|.++|..+.. ..+++.+++++.++ .-+...-++.+++.+.+.
T Consensus 414 d~~~la~ai~~~l~~~~~-e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 414 DIEGIAAAIKRALEMPEE-EQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred CHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 789999999999986431 14444555555532 245566666666666554
No 221
>PRK10490 sensor protein KdpD; Provisional
Probab=50.06 E-value=71 Score=35.82 Aligned_cols=42 Identities=29% Similarity=0.356 Sum_probs=38.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCch
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTS 47 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (481)
+++|.+=..|+-|-.+-|+.-|++|.++ |++|.+-.-+...+
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~-g~dvv~g~~e~h~r 65 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQ-GLDVLVGVVETHGR 65 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhC-CCcEEEEEeeCCCC
Confidence 4899999999999999999999999999 99999988886543
No 222
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=50.02 E-value=40 Score=30.66 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=35.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-+++.-.|+.|-..-..+++....++ |..|.|++.+...+.+.+.
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~~~~~~~~~ 71 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTENTSKSYLKQ 71 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHHHHH
Confidence 35666778999999999998887778 9999999998665554443
No 223
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=49.93 E-value=64 Score=31.05 Aligned_cols=61 Identities=18% Similarity=0.114 Sum_probs=47.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEec
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSL 67 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 67 (481)
--|+|+-.=+.|-..-.-.||+.|.+. |+.|.++....|+.....++..+..+.++.++.-
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~-g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~ 200 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQ-GKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG 200 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHC-CCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc
Confidence 445666667889999999999999999 9999999999888776666555544446666554
No 224
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=49.88 E-value=1.9e+02 Score=25.73 Aligned_cols=107 Identities=10% Similarity=0.053 Sum_probs=56.0
Q ss_pred hhhhhccccCCceeeecCCchhHHHHHc----CcceeecccccchhhhHHHH----HHh--hceeEeccccCCCCccCHH
Q 011608 348 QVEILGHASVGGFLSHCGWNSTLESIVN----GVPLIVWPLYAEQKMNATML----AEE--LGVAVRPNEMPTENLVKRE 417 (481)
Q Consensus 348 q~~lL~~~~~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v----~~~--~G~g~~~~~~~~~~~~~~~ 417 (481)
+.+-+..++ ++|.--+...+.+.++. ++++-+ .|.+..+.-+ .++ +-+|+.-.. ....-+.
T Consensus 64 ~~~~l~~ad--lViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g~l~iaIsT~G---~sP~la~ 134 (202)
T PRK06718 64 EPSDIVDAF--LVIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRGKLTISVSTDG---ASPKLAK 134 (202)
T ss_pred ChhhcCCce--EEEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcCCeEEEEECCC---CChHHHH
Confidence 344466656 78888887777776653 444333 3443332211 012 223333211 0223357
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 011608 418 EIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVA 464 (481)
Q Consensus 418 ~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 464 (481)
.|++.|++++ .++...+-+.+.++++.++..+............++
T Consensus 135 ~lr~~ie~~~-~~~~~~~~~~~~~~R~~~k~~~~~~~~R~~~~~~~~ 180 (202)
T PRK06718 135 KIRDELEALY-DESYESYIDFLYECRQKIKELQIEKREKQILLQEVL 180 (202)
T ss_pred HHHHHHHHHc-chhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 7888888877 444455777888888887664333333333334443
No 225
>PRK11519 tyrosine kinase; Provisional
Probab=49.79 E-value=1.7e+02 Score=31.98 Aligned_cols=117 Identities=8% Similarity=0.058 Sum_probs=65.9
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCC---------------------CCCc
Q 011608 5 KTHIALLAS--PGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLP---------------------NPHL 61 (481)
Q Consensus 5 ~~~vvl~~~--p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~---------------------~~~~ 61 (481)
+.++++++. |+.|-..-...||..|+.. |++|.++-.......+.+.+.... ..++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~-g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~ 603 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQT-NKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCC
Confidence 345555554 7889999999999999999 999999865533322222111100 0012
Q ss_pred eEEEecCCCCCCCCCCCCccHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCc----hHHHHHHHhCCceEEEec
Q 011608 62 FNIVSLPPVDISALLDADASIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGT----EAFQIADEFEMLKYVYIA 136 (481)
Q Consensus 62 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~----~~~~~A~~~giP~v~~~~ 136 (481)
+.+++-.. . + .+.... . ....+.++++.+..++|.||.|.-.. .+..++...+...++...
T Consensus 604 l~~lp~g~-----~-~--~~~~el---l---~s~~~~~ll~~l~~~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr~ 668 (719)
T PRK11519 604 FDLIPRGQ-----V-P--PNPSEL---L---MSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARY 668 (719)
T ss_pred EEEEeCCC-----C-C--CCHHHH---h---hHHHHHHHHHHHHhcCCEEEEeCCCcccchHHHHHHHHCCeEEEEEeC
Confidence 22222110 0 0 111111 1 12345566666656899999995332 355678888877766554
No 226
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=49.40 E-value=1e+02 Score=23.05 Aligned_cols=34 Identities=9% Similarity=0.089 Sum_probs=22.2
Q ss_pred HHHHHhhcCCCCcEEEEcCCC---------chHHHHHHHhCCceE
Q 011608 97 LRSSISTLKPRPTALFADLFG---------TEAFQIADEFEMLKY 132 (481)
Q Consensus 97 ~~~~l~~~~~~~D~VI~D~~~---------~~~~~~A~~~giP~v 132 (481)
+.+.+++- ++|+||.-+.. ..-..+|...+||++
T Consensus 47 i~~~i~~g--~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 47 ILDLIKNG--EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHhcCC--CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 55566665 99999974321 112357888899975
No 227
>PLN02929 NADH kinase
Probab=49.24 E-value=28 Score=33.08 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=42.9
Q ss_pred CCceeeecCCchhHHHHH---cCcceeeccccc------chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHh
Q 011608 357 VGGFLSHCGWNSTLESIV---NGVPLIVWPLYA------EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRIL 427 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~---~GvP~v~~P~~~------DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl 427 (481)
++++|+-||-||+..|.+ .++|++++=.-- .++.|... +..-+|.. -..+.+++.++|++++
T Consensus 65 ~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~--~~r~lGfL-------~~~~~~~~~~~L~~il 135 (301)
T PLN02929 65 VDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD--ARRSTGHL-------CAATAEDFEQVLDDVL 135 (301)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc--cccCcccc-------ccCCHHHHHHHHHHHH
Confidence 349999999999999855 468888775531 12233211 12234443 3357899999999999
Q ss_pred cCC
Q 011608 428 VDK 430 (481)
Q Consensus 428 ~~~ 430 (481)
.++
T Consensus 136 ~g~ 138 (301)
T PLN02929 136 FGR 138 (301)
T ss_pred cCC
Confidence 764
No 228
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=48.94 E-value=98 Score=27.32 Aligned_cols=114 Identities=11% Similarity=0.022 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHHHHHHhhHHHH
Q 011608 19 FIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIFMMRESLPALR 98 (481)
Q Consensus 19 i~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (481)
+.-...+.+.+... |-+|.|+++.+....+...+.... +-.++.- ....+.+..-.........+.......+.
T Consensus 42 L~~A~~~i~~i~~~-~g~iLfV~t~~~~~~~v~~~a~~~---~~~~i~~--rw~~G~LTN~~~~~~~~~~~~~~~~~~~~ 115 (193)
T cd01425 42 LRLALNFIANIAAK-GGKILFVGTKPQAQRAVKKFAERT---GSFYVNG--RWLGGTLTNWKTIRKSIKRLKKLEKEKLE 115 (193)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHHc---CCeeecC--eecCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777777 889999999865444333221111 1112111 11122211111111111111111112222
Q ss_pred HHHhhc---CCCCcEEE-EcCCCch-HHHHHHHhCCceEEEechh
Q 011608 99 SSISTL---KPRPTALF-ADLFGTE-AFQIADEFEMLKYVYIASN 138 (481)
Q Consensus 99 ~~l~~~---~~~~D~VI-~D~~~~~-~~~~A~~~giP~v~~~~~~ 138 (481)
..+... ...||+|| .|+..-- ++.=|.++|||+|.+.-+.
T Consensus 116 k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 116 KNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred HhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 222222 45899876 6654433 4556899999999986543
No 229
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=48.76 E-value=1.6e+02 Score=24.56 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=22.3
Q ss_pred CCceeeecCCc------hhHHHHHcCcceeeccc
Q 011608 357 VGGFLSHCGWN------STLESIVNGVPLIVWPL 384 (481)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~v~~P~ 384 (481)
..++++|+|-| .+.+|...++|+|++.-
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 44788886644 78899999999999864
No 230
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=48.75 E-value=88 Score=31.55 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=36.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEecCCCchhhhh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFA-TQNDFQVTIFVVATDTSTVQS 51 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~ 51 (481)
.-++++..++.|-..-...||..|. ++ |.+|.++....++..+..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~D~~R~~a~~ 145 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVACDLYRPAAIE 145 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEeccccchHHHH
Confidence 3566777789999999999999997 57 999999999977765433
No 231
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.09 E-value=33 Score=32.06 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=37.4
Q ss_pred CCceeeecCCchhHHHHH------cCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIV------NGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~------~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
++++|+-||-||+..|++ .++|.+.+-. .+ +|.. ...+.+++.++++++++++
T Consensus 36 ~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~------------G~--lGFL-------~~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 36 PDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT------------GH--LGFY-------TDWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC------------CC--ceec-------ccCCHHHHHHHHHHHHcCC
Confidence 459999999999999986 4778777653 11 2222 3356777888888888654
No 232
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=47.90 E-value=1.4e+02 Score=25.38 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=34.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
+++.-.|+.|-......++..|.++ |.+|.++........
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D~~~~~ 42 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAADTYRPA 42 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCChH
Confidence 5677779999999999999999999 999999998866544
No 233
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=47.55 E-value=1.2e+02 Score=27.74 Aligned_cols=45 Identities=13% Similarity=0.041 Sum_probs=35.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-+++.-.|+.|-..=.++++.+-.++ |-.+.|++.+...+.+.+.
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~~~ 67 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVRRN 67 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHHHH
Confidence 36677778899998888888776678 9999999999776665553
No 234
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=47.44 E-value=1.4e+02 Score=25.15 Aligned_cols=28 Identities=14% Similarity=0.419 Sum_probs=24.7
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCCeEEEE
Q 011608 12 ASPGMGHFIPVLELGKRFATQNDFQVTIF 40 (481)
Q Consensus 12 ~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~ 40 (481)
+-+..|-..-.+.|++.|+++ |.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~-g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKA-GYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHC-CCcEEEE
Confidence 346779999999999999999 9999886
No 235
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=47.24 E-value=1.5e+02 Score=25.66 Aligned_cols=106 Identities=11% Similarity=0.060 Sum_probs=55.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCe--EEEEecCCCchhhhhh-ccCCCCCCceEEEecCCCCCCCCCCCCccH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQ--VTIFVVATDTSTVQSQ-LRNLPNPHLFNIVSLPPVDISALLDADASI 82 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~--Vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 82 (481)
|||+|+..++. .-+..+..+|.++ +|+ +..+.+.+........ .... +....+....
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~-~~~~~iv~Vit~~~~~~~~~~~~~~~-----~~~~~~~~~~----------- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKAR-GHNVEIVLVITNPDKPRGRSRAIKNG-----IPAQVADEKN----------- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTT-SSEEEEEEEEESSTTTHHHHHHHHTT-----HHEEEHHGGG-----------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhC-CCCceEEEEeccccccccccccccCC-----CCEEeccccC-----------
Confidence 68888854433 5577778899999 897 5555555333321111 1111 1111110000
Q ss_pred HHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCC-chHHHHHHHhCCceEEEech
Q 011608 83 VIKIIFMMRESLPALRSSISTLKPRPTALFADLFG-TEAFQIADEFEMLKYVYIAS 137 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~-~~~~~~A~~~giP~v~~~~~ 137 (481)
........+.+.+.+++. +||++|+-.+. .-...+-..+...++-++++
T Consensus 61 ----~~~~~~~~~~~~~~l~~~--~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 ----FQPRSENDEELLELLESL--NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp ----SSSHHHHHHHHHHHHHHT--T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred ----CCchHhhhhHHHHHHHhh--ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 000122345667788888 99998865433 23345557777777877764
No 236
>PRK06749 replicative DNA helicase; Provisional
Probab=46.55 E-value=1.3e+02 Score=30.50 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=38.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-|++..-|+.|-..-.+.+|...+.+ |+.|.|++-|-....+..+
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~~-g~~v~~fSlEMs~~ql~~R 232 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAKS-GAAVGLFSLEMSSKQLLKR 232 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhc-CCCEEEEEeeCCHHHHHHH
Confidence 36777789999999999999999988 9999999999766655544
No 237
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=46.47 E-value=2.5e+02 Score=26.13 Aligned_cols=39 Identities=5% Similarity=0.011 Sum_probs=27.9
Q ss_pred HHHHHHhhcCCCCcEEEEcCCCc------hHHHHHHHhCCceEEEec
Q 011608 96 ALRSSISTLKPRPTALFADLFGT------EAFQIADEFEMLKYVYIA 136 (481)
Q Consensus 96 ~~~~~l~~~~~~~D~VI~D~~~~------~~~~~A~~~giP~v~~~~ 136 (481)
.+...+++. .||+|++...+. -+..+|+.+|+|++.+..
T Consensus 103 ~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 103 ALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred HHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 444556666 799999654332 345799999999998664
No 238
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=46.42 E-value=28 Score=33.38 Aligned_cols=38 Identities=18% Similarity=0.376 Sum_probs=32.0
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
|...+|+|+++-.++.| ..+|..|++. ||+|+++....
T Consensus 1 ~~~~~m~I~IiG~GaiG-----~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 1 MDSETPRIGIIGTGAIG-----GFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred CCCcCcEEEEECCCHHH-----HHHHHHHHHC-CCeEEEEEeCC
Confidence 67788999999888777 4567889999 99999998764
No 239
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=46.27 E-value=55 Score=26.06 Aligned_cols=44 Identities=14% Similarity=0.029 Sum_probs=35.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
++..+.++..|......++..|.++ |++|.++......+.+...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~-G~~v~~l~~~~~~~~~~~~ 45 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDN-GFEVIDLGVDVPPEEIVEA 45 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHC-CCEEEEcCCCCCHHHHHHH
Confidence 5777789999999999999999999 9999999776544444433
No 240
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=46.13 E-value=53 Score=34.75 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=22.5
Q ss_pred CCceeeecCCc------hhHHHHHcCcceeecc
Q 011608 357 VGGFLSHCGWN------STLESIVNGVPLIVWP 383 (481)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~v~~P 383 (481)
.+++++|.|-| ++.+|...++|+|++.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 44788888754 7899999999999984
No 241
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=45.86 E-value=33 Score=31.37 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=50.6
Q ss_pred CCcEEEEEeCCC---CCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhh-cC-
Q 011608 263 TESVIYVSFGGG---GTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRN-AK- 337 (481)
Q Consensus 263 ~~~vv~vs~GS~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~- 337 (481)
+++.|.+..|+. -.++.+...++++.+.+.+.++++..+... . -....+.+ +.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~---------------------~-~~~~~~~~~~~~ 161 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE---------------------Q-EKEIADQIAAGL 161 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH---------------------H-HHHHHHHHHTTH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH---------------------H-HHHHHHHHHHhc
Confidence 445788888875 346788889999999887766554432110 0 00111111 11
Q ss_pred --CCccccc--cCch-hhhhccccCCceeeecCCchhHHHHHcCcceeec
Q 011608 338 --MGLVVPD--WAPQ-VEILGHASVGGFLSHCGWNSTLESIVNGVPLIVW 382 (481)
Q Consensus 338 --~~~~v~~--~~pq-~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~ 382 (481)
..+.+.+ -+.+ .+++.+++ ++|+.-. |.++=|.+.|+|+|++
T Consensus 162 ~~~~~~~~~~~~l~e~~ali~~a~--~~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 162 QNPVINLAGKTSLRELAALISRAD--LVIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp TTTTEEETTTS-HHHHHHHHHTSS--EEEEESS-HHHHHHHHTT--EEEE
T ss_pred ccceEeecCCCCHHHHHHHHhcCC--EEEecCC-hHHHHHHHHhCCEEEE
Confidence 1122212 2233 57888877 8888764 5889999999999998
No 242
>PTZ00445 p36-lilke protein; Provisional
Probab=45.77 E-value=95 Score=27.85 Aligned_cols=113 Identities=14% Similarity=0.102 Sum_probs=59.8
Q ss_pred cCHHH-HHHHHHHHHhCCCCeEEEEecCCCch--------------hhhhhccCCCCCCceEEEecCCCCCCCCCCCCcc
Q 011608 17 GHFIP-VLELGKRFATQNDFQVTIFVVATDTS--------------TVQSQLRNLPNPHLFNIVSLPPVDISALLDADAS 81 (481)
Q Consensus 17 GHi~P-~l~La~~L~~r~Gh~Vt~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 81 (481)
+|+.| +..+.++|.+. |..|+++|...... .+...+.... ..+....+-. ..+.. +...+
T Consensus 74 ~~~tpefk~~~~~l~~~-~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~--~~~~i~~~~~-yyp~~-w~~p~ 148 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNS-NIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSK--CDFKIKKVYA-YYPKF-WQEPS 148 (219)
T ss_pred ccCCHHHHHHHHHHHHC-CCeEEEEEccchhhccccCCcceechHHHHHHHHHhcC--ccceeeeeee-eCCcc-cCChh
Confidence 45667 89999999999 99999999774322 1111122111 1222222211 11111 11111
Q ss_pred HHHHHHHHHHHh--h--HHHHHHHhhcCC-CCcEEEEcCCCchHHHHHHHhCCceEEEec
Q 011608 82 IVIKIIFMMRES--L--PALRSSISTLKP-RPTALFADLFGTEAFQIADEFEMLKYVYIA 136 (481)
Q Consensus 82 ~~~~~~~~~~~~--~--~~~~~~l~~~~~-~~D~VI~D~~~~~~~~~A~~~giP~v~~~~ 136 (481)
.+..+ .+.+-. . -+++.++++..- .-++++.|- ....+..|+++|+-.+.+..
T Consensus 149 ~y~~~-gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD-~~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 149 DYRPL-GLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDD-DMNNCKNALKEGYIALHVTG 206 (219)
T ss_pred hhhhh-cccCCCccchHHHHHHHHHHcCCCHHHeEeecC-CHHHHHHHHHCCCEEEEcCC
Confidence 11111 111111 1 123666666632 346888887 45678899999999987654
No 243
>PRK08322 acetolactate synthase; Reviewed
Probab=45.70 E-value=50 Score=34.57 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=22.7
Q ss_pred CCceeeecCCc------hhHHHHHcCcceeecc
Q 011608 357 VGGFLSHCGWN------STLESIVNGVPLIVWP 383 (481)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~v~~P 383 (481)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 45888888854 7899999999999984
No 244
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=45.55 E-value=75 Score=28.58 Aligned_cols=100 Identities=9% Similarity=0.009 Sum_probs=56.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHH
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKII 87 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 87 (481)
+++.--|+.|-..-.++++....++ |+.|.|++.+...+.+.+.+.... ..+...-.. .+ .-..-....+.
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~~~~~~----~~~~~~~~~---~l-~~~~~~~~~~~ 89 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGYAKSKG----WDLEDYIDK---SL-YIVRLDPSDFK 89 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHcC----CChHHHHhC---Ce-EEEecCHHHHH
Confidence 4555567888888888888888888 999999999977666555432221 111110000 00 00000001111
Q ss_pred HHHHHhhHHHHHHHhhcCCCCcEEEEcCCCc
Q 011608 88 FMMRESLPALRSSISTLKPRPTALFADLFGT 118 (481)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~ 118 (481)
.........+...+++. ++++||.|.+..
T Consensus 90 ~~~~~l~~~~~~~i~~~--~~~~vVIDsls~ 118 (224)
T TIGR03880 90 TSLNRIKNELPILIKEL--GASRVVIDPISL 118 (224)
T ss_pred hhHHHHHHHHHHHHHHh--CCCEEEEcChHH
Confidence 22233344556667777 899999997543
No 245
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=45.33 E-value=2.7e+02 Score=27.58 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=33.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhh
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTV 49 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~ 49 (481)
+++.--|+.|--.=+++++..+.+. |..|.|++.++..+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCcCHHHH
Confidence 4566668899999999999999998 8999999988655443
No 246
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=45.20 E-value=18 Score=36.69 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=44.7
Q ss_pred eecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 011608 362 SHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKE 441 (481)
Q Consensus 362 ~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~ 441 (481)
-|=|. ++.||+++|+|+++. ++..=+..| +..--|..+++ ..-....+++++.+...|+. ++.++.+
T Consensus 376 E~FGi-v~IEAMa~glPvvAt----~~GGP~EiV-~~~~tG~l~dp----~~e~~~~~a~~~~kl~~~p~---l~~~~~~ 442 (495)
T KOG0853|consen 376 EHFGI-VPIEAMACGLPVVAT----NNGGPAEIV-VHGVTGLLIDP----GQEAVAELADALLKLRRDPE---LWARMGK 442 (495)
T ss_pred CCccc-eeHHHHhcCCCEEEe----cCCCceEEE-EcCCcceeeCC----chHHHHHHHHHHHHHhcCHH---HHHHHHH
Confidence 56666 899999999999986 344444454 35555666652 22223379999999999987 5544443
No 247
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=45.13 E-value=41 Score=21.66 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHhcC-CchHHHHHHHHHH
Q 011608 415 KREEIEMMVRRILVD-KEGQALRSRVKEL 442 (481)
Q Consensus 415 ~~~~l~~al~~vl~~-~~~~~~r~~a~~l 442 (481)
++++|.+||..+.++ -+ +++.|+..
T Consensus 1 tee~l~~Ai~~v~~g~~S---~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMS---IRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS----HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCC---HHHHHHHH
Confidence 578999999999976 44 77777764
No 248
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=44.79 E-value=70 Score=29.74 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=32.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDT 46 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (481)
+++.-.|+.|-..=.++++...+++ |..|.|++.+...
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVESPA 76 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCc
Confidence 5666678999999999999998888 9999999998544
No 249
>PRK07004 replicative DNA helicase; Provisional
Probab=44.61 E-value=1.8e+02 Score=29.77 Aligned_cols=44 Identities=18% Similarity=0.353 Sum_probs=35.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEecCCCchhhhhh
Q 011608 8 IALLASPGMGHFIPVLELGKRFA-TQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
+++..-|+.|-..-.+.+|..++ +. |+.|.|++-|-....+..+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~-~~~v~~fSlEM~~~ql~~R 260 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEY-GLPVAVFSMEMPGTQLAMR 260 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHH
Confidence 67777899999999999998876 56 8999999999776655444
No 250
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.60 E-value=36 Score=32.05 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=35.6
Q ss_pred CCceeeecCCchhHHHHH---cCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIV---NGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~---~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
+.++|.-||-||+.+++. .++|.+++|.-. + |.. ..++.+++.+++++++.++
T Consensus 58 ~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------l--GFl-------~~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 58 VDFIIAIGGDGTILRIEHKTKKDIPILGINMGT------------L--GFL-------TEVEPEETFFALSRLLEGD 113 (277)
T ss_pred CCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------C--Ccc-------ccCCHHHHHHHHHHHHcCC
Confidence 449999999999999985 345766666411 1 111 3345677888888887654
No 251
>PRK10867 signal recognition particle protein; Provisional
Probab=44.57 E-value=93 Score=31.43 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=37.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
.-|+++..++.|-..-...||..|.++.|+.|.+++...++.....+
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQ 147 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQ 147 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHH
Confidence 45667777899999999999999987647999999999877654433
No 252
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=44.19 E-value=40 Score=31.99 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=36.7
Q ss_pred CCceeeecCCchhHHHHHc----CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIVN----GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
++++|+-||-||+.+++.. ++|.+.+-. ..+ |.. ...+.+++.++|++++.++
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~------------G~l--GFL-------~~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLAPYGVPLIGINH------------GRL--GFI-------TDIPLDDMQETLPPMLAGN 120 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC------------CCc--ccc-------ccCCHHHHHHHHHHHHcCC
Confidence 3499999999999999874 556665541 111 222 3357788888888888654
No 253
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=43.99 E-value=28 Score=26.57 Aligned_cols=83 Identities=11% Similarity=0.143 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCC-CCCCCccHHHHHHHHHHHhhHHHHHH
Q 011608 22 VLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISA-LLDADASIVIKIIFMMRESLPALRSS 100 (481)
Q Consensus 22 ~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (481)
++.+|+.|.+. |++ ++.++.....+.+. ++....+-...... . +.+.. .+.+.
T Consensus 2 ~~~~a~~l~~l-G~~--i~AT~gTa~~L~~~--------Gi~~~~v~~~~~~~~~-~~g~~--------------~i~~~ 55 (95)
T PF02142_consen 2 IVPLAKRLAEL-GFE--IYATEGTAKFLKEH--------GIEVTEVVNKIGEGES-PDGRV--------------QIMDL 55 (95)
T ss_dssp HHHHHHHHHHT-TSE--EEEEHHHHHHHHHT--------T--EEECCEEHSTG-G-GTHCH--------------HHHHH
T ss_pred HHHHHHHHHHC-CCE--EEEChHHHHHHHHc--------CCCceeeeeecccCcc-CCchh--------------HHHHH
Confidence 57899999999 966 45555333433322 45544333211111 1 01000 56667
Q ss_pred HhhcCCCCcEEEEcCCCchH---------HHHHHHhCCceE
Q 011608 101 ISTLKPRPTALFADLFGTEA---------FQIADEFEMLKY 132 (481)
Q Consensus 101 l~~~~~~~D~VI~D~~~~~~---------~~~A~~~giP~v 132 (481)
+++- ++|+||.-+..... ..+|..++||++
T Consensus 56 i~~~--~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 56 IKNG--KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHTT--SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHcC--CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 7766 99999976543321 247888889875
No 254
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=43.73 E-value=1.7e+02 Score=25.17 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=36.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
+++.-.|+.|=..=.++++....+. |..|.|++.+...+.+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCHHHHHHH
Confidence 5667778999999999999999888 9999999999777665554
No 255
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.56 E-value=51 Score=31.22 Aligned_cols=53 Identities=8% Similarity=-0.010 Sum_probs=36.1
Q ss_pred CCceeeecCCchhHHHHHc----CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIVN----GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
++++|+-||-||+..++.. ++|.+++-. -+ +|.. ..++.+++.++|++++.++
T Consensus 65 ~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~--------G~------lGFL-------t~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 65 SDFLISLGGDGTLISLCRKAAEYDKFVLGIHA--------GH------LGFL-------TDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCcEEEEeC--------CC------cccC-------CcCCHHHHHHHHHHHHcCC
Confidence 3499999999999988763 567665532 11 2222 3356788888888888654
No 256
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=43.48 E-value=2e+02 Score=29.11 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEe
Q 011608 95 PALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYI 135 (481)
Q Consensus 95 ~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~ 135 (481)
..+.+++++. +||++|.+.. ...+|+++|||++.+.
T Consensus 362 ~e~~~~l~~~--~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 362 FDIESYAKEL--KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHHhc--CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 4667777877 9999999874 4578999999998643
No 257
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=43.41 E-value=59 Score=27.70 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=21.7
Q ss_pred CCceeeecCCc------hhHHHHHcCcceeeccc
Q 011608 357 VGGFLSHCGWN------STLESIVNGVPLIVWPL 384 (481)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~v~~P~ 384 (481)
.+++++|.|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 44677777744 67889999999999963
No 258
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=43.37 E-value=43 Score=34.12 Aligned_cols=119 Identities=12% Similarity=0.157 Sum_probs=56.8
Q ss_pred CccCHHHHHHHHHHHHhCC-------CC----eEEEEecCCCchhhhh---hccCCCCCCceEEEecCCCCCCCCCCC--
Q 011608 15 GMGHFIPVLELGKRFATQN-------DF----QVTIFVVATDTSTVQS---QLRNLPNPHLFNIVSLPPVDISALLDA-- 78 (481)
Q Consensus 15 ~~GHi~P~l~La~~L~~r~-------Gh----~Vt~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 78 (481)
+.|.+.=.+.++++|.+.. |. +|.++|--.....-.+ .++......+..++.+|+......+..
T Consensus 295 TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kwi 374 (550)
T PF00862_consen 295 TGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKWI 374 (550)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S--
T ss_pred CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhcc
Confidence 4466777788888886530 44 3555553211111111 134444334677778876442211010
Q ss_pred -CccHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCc--hHHHHHHHhCCceEEEec
Q 011608 79 -DASIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGT--EAFQIADEFEMLKYVYIA 136 (481)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~--~~~~~A~~~giP~v~~~~ 136 (481)
..+....+..+... ....+++++..+||+|+..+.-. .|..+++++|||.+....
T Consensus 375 srf~lWPyLe~fa~d---~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaH 432 (550)
T PF00862_consen 375 SRFDLWPYLEEFADD---AEREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAH 432 (550)
T ss_dssp -GGG-GGGHHHHHHH---HHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-S
T ss_pred chhhchhhHHHHHHH---HHHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhhh
Confidence 01122222333322 22334445456899999876443 355789999999876544
No 259
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.34 E-value=46 Score=31.62 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=38.1
Q ss_pred CCceeeecCCchhHHHHHc----CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIVN----GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
++++|+=||-||+..+... ++|++++-+- + +|.. ..++.+++.++|++++.++
T Consensus 65 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------~------lGFL-------t~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 65 ADMVISIGGDGTFLRTATYVGNSNIPILGINTG--------R------LGFL-------ATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEecC--------C------CCcc-------cccCHHHHHHHHHHHHcCC
Confidence 3499999999999999873 6777766431 1 2322 3467788889998888764
No 260
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.16 E-value=4.6e+02 Score=28.62 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=31.4
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEecCCC
Q 011608 5 KTHIALLAS--PGMGHFIPVLELGKRFATQNDFQVTIFVVATD 45 (481)
Q Consensus 5 ~~~vvl~~~--p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (481)
+.++++++. |+.|-..-...||..|+.. |++|.++=....
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~-G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQS-DQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhC-CCeEEEEeCCCC
Confidence 345665554 6778999999999999999 999998866543
No 261
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=43.00 E-value=52 Score=27.99 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=25.9
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 011608 266 VIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWV 299 (481)
Q Consensus 266 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 299 (481)
.+|+|+||........++...+++.+.+.--++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 6999999987777777888888888876533443
No 262
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.79 E-value=52 Score=31.47 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=38.8
Q ss_pred CCceeeecCCchhHHHHHc----CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIVN----GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
++++|+=||-||+..|... ++|++++.+- . +|.. .....+++.++|++++.++
T Consensus 73 ~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G------------~--lGFL-------~~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 73 CELVLVLGGDGTILRAAELARAADVPVLGVNLG------------H--VGFL-------AEAEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCEEEEEcCCHHHHHHHHHhccCCCcEEEEecC------------C--Ccee-------ccCCHHHHHHHHHHHHcCC
Confidence 4499999999999998764 7788877641 1 2333 3356788889999888764
No 263
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=42.57 E-value=43 Score=29.67 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCC
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATD 45 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (481)
..+|++--.++.|=+.-...|+++|.++ ||+|.++.++..
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~-G~~V~vv~T~aA 44 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDE-GAEVTPIVSYTV 44 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhC-cCEEEEEECHhH
Confidence 3577776656555444479999999999 999999999843
No 264
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=42.52 E-value=52 Score=28.12 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=21.8
Q ss_pred CCceeeecCCc------hhHHHHHcCcceeecc
Q 011608 357 VGGFLSHCGWN------STLESIVNGVPLIVWP 383 (481)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~v~~P 383 (481)
.+++++|+|-| .+.||...++|||++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 33778888754 6789999999999994
No 265
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=42.38 E-value=1.1e+02 Score=30.75 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=54.0
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCc
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADA 80 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (481)
|++ +|+|+++-.+++-| +|++.|++. ++-..+++.+.+.... .+ ........+.
T Consensus 1 ~~~-~~kvLviG~g~reh-----al~~~~~~~-~~~~~~~~~pgn~g~~-----------~~--~~~~~~~~~~------ 54 (426)
T PRK13789 1 MQV-KLKVLLIGSGGRES-----AIAFALRKS-NLLSELKVFPGNGGFP-----------DD--ELLPADSFSI------ 54 (426)
T ss_pred CCC-CcEEEEECCCHHHH-----HHHHHHHhC-CCCCEEEEECCchHHh-----------cc--ccccccCcCc------
Confidence 554 59999999998877 689999988 7665555555333210 00 0000000000
Q ss_pred cHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCch---HHHHHHHhCCceE
Q 011608 81 SIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTE---AFQIADEFEMLKY 132 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~---~~~~A~~~giP~v 132 (481)
.-.+.+.++.++. ++|+||.++-... ...+++++|+|++
T Consensus 55 -----------~d~~~l~~~a~~~--~iD~Vv~g~E~~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 55 -----------LDKSSVQSFLKSN--PFDLIVVGPEDPLVAGFADWAAELGIPCF 96 (426)
T ss_pred -----------CCHHHHHHHHHHc--CCCEEEECCchHHHHHHHHHHHHcCCCcC
Confidence 0112333455666 8999998754433 2356777999965
No 266
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=42.23 E-value=44 Score=31.17 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=24.8
Q ss_pred cEEEEEeCCCCCCChH-HHHHHHHHHHh--CCCcEEEEEcC
Q 011608 265 SVIYVSFGGGGTLSAN-QMIEVAWGLEL--SQQRFIWVVRP 302 (481)
Q Consensus 265 ~vv~vs~GS~~~~~~~-~~~~~~~al~~--~~~~~i~~~~~ 302 (481)
.+|++||||......+ .+..+.+.+++ .+..+.|.+.+
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 4789999998665555 67788888876 47888898854
No 267
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=42.01 E-value=56 Score=29.50 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=30.0
Q ss_pred EEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 7 HIALLAS--PGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 7 ~vvl~~~--p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
+|++++. ++-|-..-..+|+.+|+.+ |+.|.++=..
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~-GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQL-GKKVVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHc-CCeEEEEecC
Confidence 3555555 5779999999999999999 9999998766
No 268
>PRK11823 DNA repair protein RadA; Provisional
Probab=41.65 E-value=76 Score=32.27 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=35.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhh
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQ 50 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~ 50 (481)
+++.--|+.|-..=.++++..+.++ |.+|.|++.++..+.+.
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHHH
Confidence 5666678999999999999999988 89999999997665543
No 269
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=41.61 E-value=1.5e+02 Score=27.84 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=34.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
-|+|+..++.|-..-...||..|.+. |++|.++....+...
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~-g~~V~li~~D~~r~~ 114 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGDTFRAA 114 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeCCCCCHH
Confidence 45566778889999999999999999 999999998876543
No 270
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=41.43 E-value=98 Score=31.20 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=36.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
--|+|+-.++.|-..-...||..|.++ |++|.+++...++..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~kV~lV~~D~~R~a 142 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRK-GFKPCLVCADTFRAG 142 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEcCcccchh
Confidence 346677778999999999999999999 999999999877754
No 271
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.80 E-value=65 Score=27.21 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=30.1
Q ss_pred hhHHHHHHHhhc-----CCCCcEEEEcCCC----------chHHHHHHHhCCceEEEec
Q 011608 93 SLPALRSSISTL-----KPRPTALFADLFG----------TEAFQIADEFEMLKYVYIA 136 (481)
Q Consensus 93 ~~~~~~~~l~~~-----~~~~D~VI~D~~~----------~~~~~~A~~~giP~v~~~~ 136 (481)
..-.+++++.++ .++||+|++.-.+ --+..+|+++|+|++-.+.
T Consensus 105 SFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 105 SFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 345667777776 6799999964221 1245789999999876443
No 272
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.63 E-value=57 Score=31.03 Aligned_cols=53 Identities=17% Similarity=0.072 Sum_probs=38.1
Q ss_pred CCceeeecCCchhHHHHH----cCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIV----NGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
++++|+=||-||+..|.+ .++|.+++-.- . +|.. ..++.+++.++|++++.++
T Consensus 69 ~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G------------~--lGFL-------~~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 69 CDLVAVLGGDGTFLSVAREIAPRAVPIIGINQG------------H--LGFL-------TQIPREYMTDKLLPVLEGK 125 (296)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCEEEEecC------------C--CeEe-------eccCHHHHHHHHHHHHcCC
Confidence 449999999999999975 36787776431 1 2333 3357888999999988654
No 273
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=40.63 E-value=2.6e+02 Score=24.78 Aligned_cols=108 Identities=12% Similarity=0.040 Sum_probs=53.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVI 84 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (481)
|||+++..+..+- +.+|.+++.+.. +++|.++.+......+.+.... .++.+..++......
T Consensus 2 ~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~----~gIp~~~~~~~~~~~---------- 64 (200)
T PRK05647 2 KRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEA----AGIPTFVLDHKDFPS---------- 64 (200)
T ss_pred ceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHH----cCCCEEEECccccCc----------
Confidence 6888888765443 446667777651 3677776555322222221111 134454443211110
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCC-chHHHHHHHhCCceEEEech
Q 011608 85 KIIFMMRESLPALRSSISTLKPRPTALFADLFG-TEAFQIADEFEMLKYVYIAS 137 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~-~~~~~~A~~~giP~v~~~~~ 137 (481)
.....+.+.+.++++ ++|++|+-.+. .-...+-+.+...++-++++
T Consensus 65 -----~~~~~~~~~~~l~~~--~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHps 111 (200)
T PRK05647 65 -----REAFDAALVEALDAY--QPDLVVLAGFMRILGPTFVSAYEGRIINIHPS 111 (200)
T ss_pred -----hhHhHHHHHHHHHHh--CcCEEEhHHhhhhCCHHHHhhccCCEEEEeCc
Confidence 011123556778888 99998863221 11223333444445555543
No 274
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=40.50 E-value=40 Score=29.23 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=22.9
Q ss_pred ccccCCceeeecCCchhHHHHHcCcceeeccccc
Q 011608 353 GHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYA 386 (481)
Q Consensus 353 ~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~ 386 (481)
-+..++.+|++||-..+..... ++|+|-+|..+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 4566779999999888888877 99999999863
No 275
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=40.40 E-value=1.5e+02 Score=32.79 Aligned_cols=64 Identities=14% Similarity=0.254 Sum_probs=48.4
Q ss_pred cCHHHHHHHHHHHh------cCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhh
Q 011608 414 VKREEIEMMVRRIL------VDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEMSLQGLMAKV 478 (481)
Q Consensus 414 ~~~~~l~~al~~vl------~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 478 (481)
.+.+++.+.+..++ +|++...-.++.++.++..+.|+++ |++...|++++.++.+-.+.-|.-.
T Consensus 474 ~~~~~l~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQ~aL~eAL~~-gAsdeEI~~Lm~eLR~Am~~ym~~L 543 (851)
T TIGR02302 474 RTDDALRDVADNLWSLALGIEDGDLSDAERRLRAAQDALKDALER-GASDEEIKQLTDKLRAAMQTYMRQL 543 (851)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766654 4555555778888888888888886 6788899999999988877766543
No 276
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.27 E-value=55 Score=30.73 Aligned_cols=61 Identities=15% Similarity=-0.014 Sum_probs=39.2
Q ss_pred chhhhhccccCCceeeecCCchhHHHHHc----CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHH
Q 011608 347 PQVEILGHASVGGFLSHCGWNSTLESIVN----GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMM 422 (481)
Q Consensus 347 pq~~lL~~~~~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~a 422 (481)
++..+...++ ++|+=||-||+..+.+. ++|.+.+-.- . +|.. ..++.+++.++
T Consensus 35 ~~~~~~~~~d--~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G------------~--lGFL-------~~~~~~~~~~~ 91 (272)
T PRK02231 35 SLEEIGQRAQ--LAIVIGGDGNMLGRARVLAKYDIPLIGINRG------------N--LGFL-------TDIDPKNAYEQ 91 (272)
T ss_pred ChHHhCcCCC--EEEEECCcHHHHHHHHHhccCCCcEEEEeCC------------C--Cccc-------ccCCHHHHHHH
Confidence 3344444444 99999999999988653 5677765421 1 2322 33567788888
Q ss_pred HHHHhcCC
Q 011608 423 VRRILVDK 430 (481)
Q Consensus 423 l~~vl~~~ 430 (481)
+.+++.++
T Consensus 92 l~~~~~~g 99 (272)
T PRK02231 92 LEACLERG 99 (272)
T ss_pred HHHHHhcC
Confidence 88888733
No 277
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.01 E-value=53 Score=31.39 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=38.4
Q ss_pred CCceeeecCCchhHHHHHc----CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIVN----GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
++++|+=||-||+..|.+. ++|.+.+-. -+ +|.. ..++.+++.++|+++++++
T Consensus 69 ~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~--------G~------lGFL-------t~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 69 MKFAIVLGGDGTVLSAARQLAPCGIPLLTINT--------GH------LGFL-------TEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred cCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeC--------CC------Cccc-------ccCCHHHHHHHHHHHHcCC
Confidence 4599999999999999774 678777633 11 2222 3357788999999988764
No 278
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=39.97 E-value=3.7e+02 Score=26.27 Aligned_cols=127 Identities=10% Similarity=0.048 Sum_probs=78.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHH
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIV 83 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (481)
.+-|++++-.+-.||--.+-.-|..|++. |.+|.+++--..... . .+-.. ++++++.++...+-+..+ ...
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~-gf~VdliGy~~s~p~-e-~l~~h---prI~ih~m~~l~~~~~~p---~~~ 81 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKL-GFQVDLIGYVESIPL-E-ELLNH---PRIRIHGMPNLPFLQGGP---RVL 81 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHc-CCeEEEEEecCCCCh-H-HHhcC---CceEEEeCCCCcccCCCc---hhh
Confidence 45789999999999999999999999999 999999986644321 1 12223 589999998766444311 111
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCcEEE-EcCCCchHHHHHH----HhCCceEEEechhHHH
Q 011608 84 IKIIFMMRESLPALRSSISTLKPRPTALF-ADLFGTEAFQIAD----EFEMLKYVYIASNAWF 141 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~D~VI-~D~~~~~~~~~A~----~~giP~v~~~~~~~~~ 141 (481)
....+..-.....+-.+.-. .++|.++ -.+-+.....++. ..|.+.++=|.+..++
T Consensus 82 ~l~lKvf~Qfl~Ll~aL~~~--~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 82 FLPLKVFWQFLSLLWALFVL--RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred hhHHHHHHHHHHHHHHHHhc--cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 11122211112222223332 3778776 4454554444443 4477888878777665
No 279
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=39.76 E-value=84 Score=27.82 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=40.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEec
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSL 67 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 67 (481)
-|+|+-..+-|-..-...||..+..+ |.+|.+++...++.....++..+...-++.+...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~ 62 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVA 62 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEES
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccchh
Confidence 35667777889999999999999999 9999999999777554443322221124555443
No 280
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=39.68 E-value=2.2e+02 Score=28.47 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEE
Q 011608 95 PALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVY 134 (481)
Q Consensus 95 ~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~ 134 (481)
..+.+.+++. +||++|... ....+|+++|+|++..
T Consensus 346 ~e~~~~i~~~--~pDl~ig~s---~~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLLKEK--KADLLVAGG---KERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHHhhc--CCCEEEECC---cchhhHHhcCCCEEEc
Confidence 3556777777 999999883 3357899999998753
No 281
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=39.66 E-value=1.2e+02 Score=28.27 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=29.4
Q ss_pred ccCchhhhhccccCCceeeecCCchhHHHHHcCcceeec
Q 011608 344 DWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVW 382 (481)
Q Consensus 344 ~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~ 382 (481)
++=|+.+.|+.++- .++|---.|...||.+.|+|+-+.
T Consensus 234 g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 55588888887773 455666788899999999998763
No 282
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=39.55 E-value=1.1e+02 Score=28.09 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=23.9
Q ss_pred CCCCcEEE-EcCCCch-HHHHHHHhCCceEEEechh
Q 011608 105 KPRPTALF-ADLFGTE-AFQIADEFEMLKYVYIASN 138 (481)
Q Consensus 105 ~~~~D~VI-~D~~~~~-~~~~A~~~giP~v~~~~~~ 138 (481)
..-||+++ .|+..=- ++.=|.++|||+|.+.=+.
T Consensus 154 ~~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 154 KGLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred cCCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 44599865 7764443 5566999999999876544
No 283
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=39.40 E-value=67 Score=31.06 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=32.1
Q ss_pred HHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchH------H----HHHHHhCCceEEE
Q 011608 88 FMMRESLPALRSSISTLKPRPTALFADLFGTEA------F----QIADEFEMLKYVY 134 (481)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~------~----~~A~~~giP~v~~ 134 (481)
.-.+.....+.+.+++. +||+||+.+.+..+ . .+.++++||.++-
T Consensus 63 en~eea~~~i~~mv~~~--~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 63 ENKEEALKKILEMVKKL--KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred hCHHHHHHHHHHHHHhc--CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 33455567778888888 99999998765431 1 2567899999863
No 284
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=39.37 E-value=69 Score=30.58 Aligned_cols=38 Identities=11% Similarity=0.189 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
.|||+|+-+|. .....-++|.+. ||+|.-+.+.+....
T Consensus 1 ~mkivF~GTp~-----fa~~~L~~L~~~-~~eivaV~Tqpdkp~ 38 (307)
T COG0223 1 MMRIVFFGTPE-----FAVPSLEALIEA-GHEIVAVVTQPDKPA 38 (307)
T ss_pred CcEEEEEcCch-----hhHHHHHHHHhC-CCceEEEEeCCCCcc
Confidence 37899998874 345666778878 899999988866543
No 285
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=39.16 E-value=2.8e+02 Score=24.69 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=49.7
Q ss_pred hhhhccccCCceeeecCCchhHHH-----HHcCcceee--cccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHH
Q 011608 349 VEILGHASVGGFLSHCGWNSTLES-----IVNGVPLIV--WPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEM 421 (481)
Q Consensus 349 ~~lL~~~~~~~~I~HgG~~s~~ea-----l~~GvP~v~--~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~ 421 (481)
...+.... ++|..-|...+.+. -..|+|+-+ -|-..| +..-..+ +.-++-+.+..- .....-...|++
T Consensus 64 ~~dl~~~~--lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~-G~sP~la~~lr~ 138 (205)
T TIGR01470 64 ADILEGAF--LVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSG-GAAPVLARLLRE 138 (205)
T ss_pred HHHhCCcE--EEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECC-CCCcHHHHHHHH
Confidence 33455555 78888887655443 346777733 233333 1222222 122233333210 002233578888
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHH
Q 011608 422 MVRRILVDKEGQALRSRVKELKHSAKKA 449 (481)
Q Consensus 422 al~~vl~~~~~~~~r~~a~~l~~~~~~~ 449 (481)
.|++.+.. +...+-+.+.++++.++..
T Consensus 139 ~ie~~l~~-~~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 139 RIETLLPP-SLGDLATLAATWRDAVKKR 165 (205)
T ss_pred HHHHhcch-hHHHHHHHHHHHHHHHHhh
Confidence 88888843 3344777777777776654
No 286
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=39.14 E-value=44 Score=32.80 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=54.5
Q ss_pred ccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC-CCccCHHHHHHH
Q 011608 344 DWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT-ENLVKREEIEMM 422 (481)
Q Consensus 344 ~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~-~~~~~~~~l~~a 422 (481)
+..+-.++|..++ ++||--. ..+.|.+..++|+|....-.|.+.. ..|.-......-. ...-+.++|.++
T Consensus 259 ~~~~~~~ll~~aD--iLITDyS-Si~fD~~~l~KPiify~~D~~~Y~~------~rg~~~~~~~~~pg~~~~~~~eL~~~ 329 (369)
T PF04464_consen 259 DNEDIYDLLAAAD--ILITDYS-SIIFDFLLLNKPIIFYQPDLEEYEK------ERGFYFDYEEDLPGPIVYNFEELIEA 329 (369)
T ss_dssp T-S-HHHHHHT-S--EEEESS--THHHHHGGGT--EEEE-TTTTTTTT------TSSBSS-TTTSSSS-EESSHHHHHHH
T ss_pred CCCCHHHHHHhcC--EEEEech-hHHHHHHHhCCCEEEEeccHHHHhh------ccCCCCchHhhCCCceeCCHHHHHHH
Confidence 4456788998988 8999884 4889999999999988776665532 2233222210000 012478999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHH
Q 011608 423 VRRILVDKEGQALRSRVKELKHSA 446 (481)
Q Consensus 423 l~~vl~~~~~~~~r~~a~~l~~~~ 446 (481)
|+.++.++. .++++-++..++.
T Consensus 330 i~~~~~~~~--~~~~~~~~~~~~~ 351 (369)
T PF04464_consen 330 IENIIENPD--EYKEKREKFRDKF 351 (369)
T ss_dssp HTTHHHHHH--HTHHHHHHHHHHH
T ss_pred HHhhhhCCH--HHHHHHHHHHHHh
Confidence 999887644 2455556666654
No 287
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=39.13 E-value=1.5e+02 Score=28.59 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=54.1
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCc-eEEEecCCCCCCCCCCCCccHHHHHHHH
Q 011608 11 LASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHL-FNIVSLPPVDISALLDADASIVIKIIFM 89 (481)
Q Consensus 11 ~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 89 (481)
++.++.|-.--...|++.|.++ |++|.+++-..-... .+ ...++-.. ... ..+++........
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~-G~~~~IlSRGYg~~~-----------~~~~~~v~~~~---~~~-~~GDEp~lla~~~ 106 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQAR-GYRPAILSRGYGRKS-----------KGEPILVSDGS---DAE-EVGDEPLLLARKL 106 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhc-CCceEEEcCCCCCCC-----------CCCeEEEeCCC---Chh-hhcCHHHHHHHhc
Confidence 3558899999999999999999 999999998732221 11 22222221 111 2344443322221
Q ss_pred H------HHhhHHHHHHHhhcCCCCcEEEEcCCCc
Q 011608 90 M------RESLPALRSSISTLKPRPTALFADLFGT 118 (481)
Q Consensus 90 ~------~~~~~~~~~~l~~~~~~~D~VI~D~~~~ 118 (481)
- .......+.++++. .+|+||.|--+.
T Consensus 107 ~~~V~V~~dR~~~~~~~~~~~--~~dviilDDGfQ 139 (326)
T PF02606_consen 107 PVPVIVGPDRVAAARAALKEF--PADVIILDDGFQ 139 (326)
T ss_pred CCcEEEeCcHHHHHHHHHHHC--CCCEEEEcCCcc
Confidence 1 11235556666766 699999997554
No 288
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.70 E-value=60 Score=30.82 Aligned_cols=53 Identities=11% Similarity=0.011 Sum_probs=37.1
Q ss_pred CCceeeecCCchhHHHHHc----CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIVN----GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
++++|+=||-||+..++.. ++|++.+-.- .+|. . ..++++++.++++++++++
T Consensus 64 ~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G------------~lGF--l-------~~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 64 ADLAIVVGGDGNMLGAARVLARYDIKVIGINRG------------NLGF--L-------TDLDPDNALQQLSDVLEGH 120 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCeEEEEECC------------CCCc--c-------cccCHHHHHHHHHHHHcCC
Confidence 4499999999999999853 5666665431 1222 2 3356788999999998654
No 289
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=38.46 E-value=2.2e+02 Score=24.06 Aligned_cols=98 Identities=14% Similarity=0.088 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCCCeEEEEecCCCchhhh---hhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHHHHHHhhHHH
Q 011608 21 PVLELGKRFATQNDFQVTIFVVATDTSTVQ---SQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIFMMRESLPAL 97 (481)
Q Consensus 21 P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (481)
-.+..|++|++..|.+|+.++--+...... ..+.... --+.+.+........ ........+
T Consensus 19 e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G---~d~v~~~~~~~~~~~-------------~~~~~a~~l 82 (164)
T PF01012_consen 19 EALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYG---ADKVYHIDDPALAEY-------------DPEAYADAL 82 (164)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTT---ESEEEEEE-GGGTTC--------------HHHHHHHH
T ss_pred HHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcC---CcEEEEecCcccccc-------------CHHHHHHHH
Confidence 367889999876578888887653122111 1123222 112333332111110 112234456
Q ss_pred HHHHhhcCCCCcEEEEcCCCch---HHHHHHHhCCceEEEec
Q 011608 98 RSSISTLKPRPTALFADLFGTE---AFQIADEFEMLKYVYIA 136 (481)
Q Consensus 98 ~~~l~~~~~~~D~VI~D~~~~~---~~~~A~~~giP~v~~~~ 136 (481)
.+++++. +||+|+.-..... +..+|.++|.|++.-.+
T Consensus 83 ~~~~~~~--~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 83 AELIKEE--GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHH--T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHhc--CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 6677777 9999997765554 34689999999988544
No 290
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=38.38 E-value=3e+02 Score=24.87 Aligned_cols=34 Identities=6% Similarity=0.039 Sum_probs=26.5
Q ss_pred HHHhhcCCCCcEEEEcCCCchHH---HHHHHhCCceEEE
Q 011608 99 SSISTLKPRPTALFADLFGTEAF---QIADEFEMLKYVY 134 (481)
Q Consensus 99 ~~l~~~~~~~D~VI~D~~~~~~~---~~A~~~giP~v~~ 134 (481)
..+++. +.|+|+-|+..+... .+++..|+|++.-
T Consensus 172 ~~L~~~--gadlIvLDCmGYt~~~r~~~~~~~g~PVlLs 208 (221)
T PF07302_consen 172 RELAEQ--GADLIVLDCMGYTQEMRDIVQRALGKPVLLS 208 (221)
T ss_pred HHHHhc--CCCEEEEECCCCCHHHHHHHHHHhCCCEEeH
Confidence 345555 999999999887643 5888999999863
No 291
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=38.27 E-value=62 Score=32.16 Aligned_cols=101 Identities=16% Similarity=0.306 Sum_probs=64.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHH
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKII 87 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 87 (481)
|++---|+.|--.=+++++..|+++ | .|.|++.|+....+.-+...+. + +. .. +.
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~-~-~vLYVsGEES~~QiklRA~RL~----~-----~~---~~-----------l~ 150 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKR-G-KVLYVSGEESLQQIKLRADRLG----L-----PT---NN-----------LY 150 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhc-C-cEEEEeCCcCHHHHHHHHHHhC----C-----Cc---cc-----------eE
Confidence 5555668999999999999999999 8 9999999966554322211111 0 00 01 11
Q ss_pred HHHHHhhHHHHHHHhhcCCCCcEEEEcCCCc----h-----------------HHHHHHHhCCceEEEe
Q 011608 88 FMMRESLPALRSSISTLKPRPTALFADLFGT----E-----------------AFQIADEFEMLKYVYI 135 (481)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~----~-----------------~~~~A~~~giP~v~~~ 135 (481)
.+.+...+.+.+.+++. +||++|.|..-. . ...+|+..||+.+.+-
T Consensus 151 l~aEt~~e~I~~~l~~~--~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 151 LLAETNLEDIIAELEQE--KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred EehhcCHHHHHHHHHhc--CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 12223455666677777 999999995311 1 1246788888877653
No 292
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=38.19 E-value=2.1e+02 Score=29.42 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEE
Q 011608 96 ALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYV 133 (481)
Q Consensus 96 ~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~ 133 (481)
.+.+.+++. +||++|.. .....+|+++|||++.
T Consensus 384 e~~~~i~~~--~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 384 ELYKMLKEA--KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHhhc--CCCEEEec---CchhhhhhhcCCCEEE
Confidence 445566667 99999996 4566889999999974
No 293
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=38.13 E-value=1.3e+02 Score=29.10 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=24.1
Q ss_pred CCCCcEEE-EcCCCch-HHHHHHHhCCceEEEechh
Q 011608 105 KPRPTALF-ADLFGTE-AFQIADEFEMLKYVYIASN 138 (481)
Q Consensus 105 ~~~~D~VI-~D~~~~~-~~~~A~~~giP~v~~~~~~ 138 (481)
...||+|| .|...-- ++.=|.++|||+|.+.=+.
T Consensus 150 ~~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 150 GGLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred ccCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 45799876 6764443 5566999999999976443
No 294
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=37.85 E-value=2.4e+02 Score=28.70 Aligned_cols=36 Identities=11% Similarity=-0.046 Sum_probs=27.6
Q ss_pred hHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEE
Q 011608 94 LPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVY 134 (481)
Q Consensus 94 ~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~ 134 (481)
...+.+.+++. +||++|.. .....+|+++|||++.+
T Consensus 384 ~~e~~~~i~~~--~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 384 PRELLKLLLEY--KADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHHhhc--CCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 34566777777 99999976 33467889999999874
No 295
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=37.80 E-value=76 Score=26.44 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=28.9
Q ss_pred CCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEE
Q 011608 263 TESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVV 300 (481)
Q Consensus 263 ~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 300 (481)
...+|++++||......+.++++++.+. .+.+++++.
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~ 86 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVN 86 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEE
Confidence 3458999999987777888999988885 356777765
No 296
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.79 E-value=74 Score=29.71 Aligned_cols=54 Identities=9% Similarity=0.064 Sum_probs=36.5
Q ss_pred CCceeeecCCchhHHHHHc-----CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIVN-----GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~-----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
++++|+=||-||+..++.. .+|.+.+-.-+ .+|.. ...+.+++.++++++++++
T Consensus 40 ~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL-------~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 40 ANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY-------CDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred ccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc-------ccCCHHHHHHHHHHHHcCC
Confidence 3499999999999999874 45555543311 12322 3357788888888888654
No 297
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=37.77 E-value=1.9e+02 Score=22.79 Aligned_cols=84 Identities=10% Similarity=0.207 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHHHHHHhhHHH
Q 011608 18 HFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIFMMRESLPAL 97 (481)
Q Consensus 18 Hi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (481)
+=.-++.+++.|.+. |+++ +.++.....+.. .|+....+.... .+ ..+.+
T Consensus 10 ~K~~~~~~a~~l~~~-G~~i--~AT~gTa~~L~~--------~Gi~~~~v~~~~------~~-------------g~~~i 59 (112)
T cd00532 10 VKAMLVDLAPKLSSD-GFPL--FATGGTSRVLAD--------AGIPVRAVSKRH------ED-------------GEPTV 59 (112)
T ss_pred cHHHHHHHHHHHHHC-CCEE--EECcHHHHHHHH--------cCCceEEEEecC------CC-------------CCcHH
Confidence 445688999999999 9987 344433333222 144443332111 00 22445
Q ss_pred HHHHhh-cCCCCcEEEE--cCCC-----chH---HHHHHHhCCceEE
Q 011608 98 RSSIST-LKPRPTALFA--DLFG-----TEA---FQIADEFEMLKYV 133 (481)
Q Consensus 98 ~~~l~~-~~~~~D~VI~--D~~~-----~~~---~~~A~~~giP~v~ 133 (481)
.+.+++ - ++|+||. |... ..+ ..+|-..+||+++
T Consensus 60 ~~~i~~~g--~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 60 DAAIAEKG--KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHHHhCCC--CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 566665 5 9999986 3222 112 2578889999876
No 298
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=37.34 E-value=71 Score=26.32 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
++-|++.+ +..--++|..-++...+.. |++|+++.+.
T Consensus 4 k~~IIl~S-G~~dk~~~a~iias~A~A~-G~EV~VF~Tf 40 (137)
T COG2210 4 KLGIILAS-GTLDKAYAALIIASGAAAM-GYEVTVFFTF 40 (137)
T ss_pred eEEEEEeC-CCHHHHHHHHHHHHHHHHc-CCeEEEEEeH
Confidence 35555555 7778899999999999999 9999999997
No 299
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.33 E-value=69 Score=29.75 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=36.4
Q ss_pred CCceeeecCCchhHHHHH-cCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIV-NGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~-~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
+.++|+=||-||+..|+. +++|.+.+-.- . +|.. ..++.+++.+++++++.++
T Consensus 42 ~d~vi~iGGDGT~L~a~~~~~~Pilgin~G------------~--lGfl-------~~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 42 ADLIIVVGGDGTVLKAAKKVGTPLVGFKAG------------R--LGFL-------SSYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCEEEEeCC------------C--Cccc-------cccCHHHHHHHHHHHHcCC
Confidence 349999999999999987 45665554311 1 2222 3357788888898888654
No 300
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=36.73 E-value=10 Score=34.75 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=29.2
Q ss_pred EEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhh
Q 011608 7 HIALLAS--PGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQ 50 (481)
Q Consensus 7 ~vvl~~~--p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~ 50 (481)
||+++.. ++.|--.-..+||-+|+.. |++|-++=-......+.
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~-G~kVg~lD~Di~q~S~~ 45 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARM-GKKVGLLDLDIRQPSLP 45 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCT-T--EEEEE--TTT-HHH
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCCCCCHH
Confidence 4555555 6788899999999999999 99999997775544433
No 301
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=36.52 E-value=1.4e+02 Score=29.13 Aligned_cols=98 Identities=11% Similarity=0.081 Sum_probs=58.8
Q ss_pred CcEEEEEeCCC---CCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCc
Q 011608 264 ESVIYVSFGGG---GTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGL 340 (481)
Q Consensus 264 ~~vv~vs~GS~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 340 (481)
++.|.+.-|+. ..++.+.+.++++.|...+.++++.-+.... ....-..+.+.....++
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~------------------e~~~~~~i~~~~~~~~~ 244 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKD------------------DLACVNEIAQGCQTPPV 244 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChH------------------HHHHHHHHHHhcCCCcc
Confidence 45788888875 4578888999999997777776654322110 00000111111111111
Q ss_pred -ccccc--Cch-hhhhccccCCceeeecCCchhHHHHHcCcceeec
Q 011608 341 -VVPDW--APQ-VEILGHASVGGFLSHCGWNSTLESIVNGVPLIVW 382 (481)
Q Consensus 341 -~v~~~--~pq-~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~ 382 (481)
-+.+- +.+ .+++.+++ +||+.= .|-++=|.+.|+|.|++
T Consensus 245 ~~l~g~~sL~el~ali~~a~--l~v~nD-SGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 245 TALAGKTTFPELGALIDHAQ--LFIGVD-SAPAHIAAAVNTPLICL 287 (352)
T ss_pred ccccCCCCHHHHHHHHHhCC--EEEecC-CHHHHHHHHcCCCEEEE
Confidence 12222 333 56888877 899876 45788899999999875
No 302
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=36.48 E-value=1e+02 Score=30.38 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=36.6
Q ss_pred cCcceeecccccchhhhHHHHHHhhceeEecc--ccCCCCccCHHHHHHHHHHHh
Q 011608 375 NGVPLIVWPLYAEQKMNATMLAEELGVAVRPN--EMPTENLVKREEIEMMVRRIL 427 (481)
Q Consensus 375 ~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~--~~~~~~~~~~~~l~~al~~vl 427 (481)
-|||+|-+-|-.|-...-.--+++.|.|..-. +-+...++++++|.+.|++.-
T Consensus 499 RGvpqIEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAe 553 (663)
T KOG0100|consen 499 RGVPQIEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAE 553 (663)
T ss_pred CCCccEEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHH
Confidence 47999999988886655443356777774322 112237899999999998764
No 303
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.41 E-value=67 Score=30.59 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=38.2
Q ss_pred CCceeeecCCchhHHHHHc----CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIVN----GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
+.++|+=||-||+.+++.. ++|++.+..- . +|.. ...+.+++.++|++++.++
T Consensus 63 ~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G------------~--lGFl-------~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 63 CDLVIVVGGDGSLLGAARALARHNVPVLGINRG------------R--LGFL-------TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC------------c--cccc-------ccCCHHHHHHHHHHHHcCC
Confidence 3489999999999999753 6677776541 1 2222 3467899999999998654
No 304
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=35.84 E-value=3.6e+02 Score=25.00 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=29.3
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 5 KTHIALLAS--PGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 5 ~~~vvl~~~--p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
..+++.++. |+.|-..-.+.||..|++. |++|.++=..
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~-g~~VllID~D 141 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQL-GEKTLLIDAN 141 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 345555444 6778889999999999999 9999988443
No 305
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=35.66 E-value=86 Score=33.04 Aligned_cols=27 Identities=19% Similarity=0.505 Sum_probs=22.7
Q ss_pred CCceeeecCCc------hhHHHHHcCcceeecc
Q 011608 357 VGGFLSHCGWN------STLESIVNGVPLIVWP 383 (481)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~v~~P 383 (481)
.+++++|.|-| .+.||...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 45888998866 6789999999999984
No 306
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=35.60 E-value=32 Score=32.33 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=32.2
Q ss_pred cCCchhH--HHHHcCcceeecccccchhhhHHHHHHhhcee
Q 011608 364 CGWNSTL--ESIVNGVPLIVWPLYAEQKMNATMLAEELGVA 402 (481)
Q Consensus 364 gG~~s~~--eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g 402 (481)
||||+++ -|-.+||-++++-+...|..+++.-+...|+-
T Consensus 81 CGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 81 CGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 7888665 45667999999999999999999844677887
No 307
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=35.59 E-value=52 Score=31.51 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=34.3
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 6 THIALLAS-PGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 6 ~~vvl~~~-p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
||++++.- ++-|-..-..++|-.++++ |++|-++++.+.++.
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~-G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARR-GKRTLLVSTDPAHSL 43 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHT-TS-EEEEESSTTTHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhC-CCCeeEeecCCCccH
Confidence 45666665 7889999999999999999 999999999987753
No 308
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=35.52 E-value=3.1e+02 Score=24.68 Aligned_cols=48 Identities=6% Similarity=0.001 Sum_probs=35.6
Q ss_pred chhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 011608 251 NSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWV 299 (481)
Q Consensus 251 ~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 299 (481)
.+.+.+|+... .+.+.||=+-|......+..++..++|+..|..+.-.
T Consensus 21 ~~~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L 68 (224)
T COG3340 21 LPFIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSEL 68 (224)
T ss_pred hHHHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeee
Confidence 34455556543 3469999999887777778899999999998876544
No 309
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=35.26 E-value=1.7e+02 Score=29.23 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=35.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDT 46 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (481)
-.|+|+-..+.|-..-...||..|..+ |+.|.+++...++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~-GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEEecCCcc
Confidence 467788888999999999999999999 9999999988765
No 310
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=34.89 E-value=1.2e+02 Score=31.91 Aligned_cols=27 Identities=11% Similarity=0.255 Sum_probs=22.3
Q ss_pred CCceeeecCCc------hhHHHHHcCcceeecc
Q 011608 357 VGGFLSHCGWN------STLESIVNGVPLIVWP 383 (481)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~v~~P 383 (481)
.+++++|.|-| ++.||...++|+|++.
T Consensus 77 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 77 PAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44788887755 7899999999999984
No 311
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=34.87 E-value=48 Score=29.63 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=32.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
+-|++.-+|+.|-..-...||++|.++ +|+|..++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~-i~~vi~l~kd 38 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE-IWRVIHLEKD 38 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh-hhhccccchh
Confidence 357788889999999999999999999 9998877665
No 312
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=34.73 E-value=69 Score=26.03 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=26.5
Q ss_pred cEEEEEeCCCCCCChHHHHHHHHHHHh--CCCcEEEEE
Q 011608 265 SVIYVSFGGGGTLSANQMIEVAWGLEL--SQQRFIWVV 300 (481)
Q Consensus 265 ~vv~vs~GS~~~~~~~~~~~~~~al~~--~~~~~i~~~ 300 (481)
.+|+++|||......+.+..+.+.+++ .+..+-|.+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~af 39 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAF 39 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 489999999766445568888888865 345777776
No 313
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=34.46 E-value=3.2e+02 Score=24.00 Aligned_cols=107 Identities=9% Similarity=-0.015 Sum_probs=52.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCC--eEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDF--QVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIV 83 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh--~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (481)
+||+++..+..+ -+..+.+.+.+. ++ +|.++.+......+.+.... .++.++.+.......
T Consensus 1 ~riail~sg~gs---~~~~ll~~~~~~-~l~~~I~~vi~~~~~~~~~~~A~~----~gip~~~~~~~~~~~--------- 63 (190)
T TIGR00639 1 KRIVVLISGNGS---NLQAIIDACKEG-KIPASVVLVISNKPDAYGLERAAQ----AGIPTFVLSLKDFPS--------- 63 (190)
T ss_pred CeEEEEEcCCCh---hHHHHHHHHHcC-CCCceEEEEEECCccchHHHHHHH----cCCCEEEECccccCc---------
Confidence 467777765444 345667777776 55 67665555322221111111 134444433211110
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCC-CchHHHHHHHhCCceEEEech
Q 011608 84 IKIIFMMRESLPALRSSISTLKPRPTALFADLF-GTEAFQIADEFEMLKYVYIAS 137 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~-~~~~~~~A~~~giP~v~~~~~ 137 (481)
.....+.+.+++++. ++|++|+=.+ ..-...+-..+...++-++++
T Consensus 64 ------~~~~~~~~~~~l~~~--~~D~iv~~~~~~il~~~~l~~~~~~~iNiHps 110 (190)
T TIGR00639 64 ------REAFDQAIIEELRAH--EVDLVVLAGFMRILGPTFLSRFAGRILNIHPS 110 (190)
T ss_pred ------hhhhhHHHHHHHHhc--CCCEEEEeCcchhCCHHHHhhccCCEEEEeCC
Confidence 011224567778888 9999885433 222333444444455555543
No 314
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=33.79 E-value=2.9e+02 Score=29.27 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCceeeecCCc------hhHHHHHcCcceeecc
Q 011608 357 VGGFLSHCGWN------STLESIVNGVPLIVWP 383 (481)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~v~~P 383 (481)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 45889998855 7788999999999996
No 315
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.50 E-value=1.7e+02 Score=24.98 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=49.9
Q ss_pred chhHHHHHcCcceeecccc--cchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 011608 367 NSTLESIVNGVPLIVWPLY--AEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKH 444 (481)
Q Consensus 367 ~s~~eal~~GvP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~ 444 (481)
-|+.|--.+|.=.+. |.- -=|..|+.+. ++.|.=..+-- +..+.++|.++..+=|.|+..+.++..+.++.+
T Consensus 88 ~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~-~rFgfPfI~aV----kg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~r 161 (176)
T COG3195 88 ESTSEQASAGLDRLS-PEEFARFTELNAAYV-ERFGFPFIIAV----KGNTKDTILAAFERRLDNDREQEFATALAEIER 161 (176)
T ss_pred hhHHHHHhcCcccCC-HHHHHHHHHHHHHHH-HhcCCceEEee----cCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 366777777654432 111 1267899998 79998755532 556899999999999988876667777766665
Q ss_pred H
Q 011608 445 S 445 (481)
Q Consensus 445 ~ 445 (481)
.
T Consensus 162 I 162 (176)
T COG3195 162 I 162 (176)
T ss_pred H
Confidence 5
No 316
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=33.43 E-value=1.4e+02 Score=24.45 Aligned_cols=102 Identities=16% Similarity=0.293 Sum_probs=51.3
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCcccccc
Q 011608 266 VIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDW 345 (481)
Q Consensus 266 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~ 345 (481)
.||+|. ..-.+..+.|.++.+..+.++.+.-+-- + +..+|.||....+.-|..|-..-++. .+ .-
T Consensus 2 ~VYLsG----EIHtdWRe~I~~ga~~~~L~v~F~~pvt-d-------H~aSD~~G~~iLG~e~~~fw~D~k~a--~i-Na 66 (144)
T TIGR03646 2 TVYLAG----EIHTDWREEIKEGAKSKNLPIVFSGPVT-D-------HEASDNIGEDILGKQPSNFWRDDAAA--SI-NN 66 (144)
T ss_pred eEEEcC----cccchHHHHHHHHHHHcCCCeEEecCCC-C-------CcchhhhhHHHhCCCCcccccccccc--ch-hh
Confidence 377762 3445567788899987777755543211 1 23334444211122222221111110 01 11
Q ss_pred CchhhhhccccCCceeeecC-----CchhHHH---HHcCcceeeccc
Q 011608 346 APQVEILGHASVGGFLSHCG-----WNSTLES---IVNGVPLIVWPL 384 (481)
Q Consensus 346 ~pq~~lL~~~~~~~~I~HgG-----~~s~~ea---l~~GvP~v~~P~ 384 (481)
+=-.-++..++ ++|-.=| ||+.+.| .+.|+|+|++--
T Consensus 67 iRT~~li~~aD--vvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~ 111 (144)
T TIGR03646 67 IRTRKLIEKAD--VVIALFGEKYKQWNAAFDAGYAAALGKPLIILRP 111 (144)
T ss_pred HHHHHHHhhCC--EEEEEechHHHHHHHHhhHHHHHHcCCCeEEecc
Confidence 12234455666 5666666 7777664 677888888644
No 317
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=33.37 E-value=89 Score=23.42 Aligned_cols=48 Identities=15% Similarity=0.273 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 011608 415 KREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCE 468 (481)
Q Consensus 415 ~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (481)
+.+.|.+.|+.-|.... ++...+.+...+ +.++|....++.++++++.
T Consensus 15 e~~~L~~~L~~rL~e~G---W~d~vr~~~re~---i~~~g~~~~~~~~l~~~i~ 62 (86)
T PF10163_consen 15 EYERLKELLRQRLIECG---WRDEVRQLCREI---IRERGIDNLTFEDLLEEIT 62 (86)
T ss_dssp HHHHHHHHHHHHHHHTT---HHHHHHHHHHHH---HHHH-TTTSBHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCC---hHHHHHHHHHHH---HHhhCCCCCCHHHHHHHHH
Confidence 45778888877775544 666666665553 4446666777788877774
No 318
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=33.22 E-value=1.5e+02 Score=30.14 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=34.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhh
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTV 49 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~ 49 (481)
+++.--|+.|-..=+++++..+.++ |..|.|++.++..+.+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcCCHHHH
Confidence 5566668999999999999999998 8999999998665443
No 319
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=33.14 E-value=47 Score=30.84 Aligned_cols=40 Identities=18% Similarity=0.367 Sum_probs=35.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDT 46 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (481)
-.++|+--|+.|-..=..++|.+|.++ |+.|+|++.+...
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~-g~sv~f~~~~el~ 145 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKA-GISVLFITAPDLL 145 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEEHHHHH
Confidence 468888889999999999999999988 9999999998433
No 320
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=33.03 E-value=2.2e+02 Score=31.47 Aligned_cols=65 Identities=12% Similarity=0.233 Sum_probs=48.1
Q ss_pred ccCHHHHHHHHHHHh------cCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhh
Q 011608 413 LVKREEIEMMVRRIL------VDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEMSLQGLMAKV 478 (481)
Q Consensus 413 ~~~~~~l~~al~~vl------~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 478 (481)
..+.+.+.+++..++ +|++.....++.+..++..+.|+++ |++...|++++.++++..+.-|.-.
T Consensus 442 ~~~~~~~~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQe~L~eAL~~-gAs~eEI~rLm~eLR~A~~~ym~~L 512 (820)
T PF13779_consen 442 ARTDEALREVADLLWDLALRIEDGDLSDAERRLRAAQEALREALER-GASDEEIARLMQELREAMQDYMQAL 512 (820)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888877665 4555444667777778888888887 6778999999999988877666543
No 321
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=31.93 E-value=1.7e+02 Score=25.83 Aligned_cols=103 Identities=17% Similarity=0.048 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCce
Q 011608 281 QMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGF 360 (481)
Q Consensus 281 ~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~ 360 (481)
.-.++++.++..+..++...+. ..-|.+.|.++.+++-+= -||+ +.
T Consensus 67 ~d~~l~~~l~~~~~dlvvLAGy---------------------MrIL~~~fl~~~~grIlN-----------IHPS--LL 112 (200)
T COG0299 67 FDRALVEALDEYGPDLVVLAGY---------------------MRILGPEFLSRFEGRILN-----------IHPS--LL 112 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEcch---------------------HHHcCHHHHHHhhcceEe-----------cCcc--cc
Confidence 4567999999998887776421 123445666655542111 2899 89
Q ss_pred eeecCCchhHHHHHcCcceeeccccc--chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHH
Q 011608 361 LSHCGWNSTLESIVNGVPLIVWPLYA--EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRR 425 (481)
Q Consensus 361 I~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~ 425 (481)
=.++|..+..+|+.+|+..-++-... +..+-+-.++ + ..+.+. ..-|.|+|++.|.+
T Consensus 113 P~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~-Q--~~Vpv~-----~~Dt~etl~~RV~~ 171 (200)
T COG0299 113 PAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIA-Q--AAVPVL-----PGDTAETLEARVLE 171 (200)
T ss_pred cCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEE-E--Eeeeec-----CCCCHHHHHHHHHH
Confidence 99999999999999999987777642 3333333321 2 223332 22378888887765
No 322
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=31.87 E-value=3.3e+02 Score=23.35 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=47.0
Q ss_pred eEEecChhhhcHHHHHHHHhccCCCCCeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHH
Q 011608 206 GILINTWEDLEPTTLASLRDGISKLPPIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEV 285 (481)
Q Consensus 206 ~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~ 285 (481)
-.++-+.++........+...+ |.+..+|-....-.. ...+++.+.+....+. +|+|++|+ |.+-.-+
T Consensus 51 ifllG~~~~~~~~~~~~l~~~y---P~l~ivg~~~g~f~~---~~~~~i~~~I~~~~pd-iv~vglG~-----PkQE~~~ 118 (172)
T PF03808_consen 51 IFLLGGSEEVLEKAAANLRRRY---PGLRIVGYHHGYFDE---EEEEAIINRINASGPD-IVFVGLGA-----PKQERWI 118 (172)
T ss_pred EEEEeCCHHHHHHHHHHHHHHC---CCeEEEEecCCCCCh---hhHHHHHHHHHHcCCC-EEEEECCC-----CHHHHHH
Confidence 3345555555555555566553 444445433221111 2566777788876554 99999996 2222333
Q ss_pred HHHHHhCCCcEEEEEcCC
Q 011608 286 AWGLELSQQRFIWVVRPP 303 (481)
Q Consensus 286 ~~al~~~~~~~i~~~~~~ 303 (481)
.+-..+++..++..++..
T Consensus 119 ~~~~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 119 ARHRQRLPAGVIIGVGGA 136 (172)
T ss_pred HHHHHHCCCCEEEEECch
Confidence 334445677766666544
No 323
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=31.82 E-value=1.1e+02 Score=29.28 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=54.0
Q ss_pred cccCc---hhhhhccccCCceeee--cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHH
Q 011608 343 PDWAP---QVEILGHASVGGFLSH--CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKRE 417 (481)
Q Consensus 343 ~~~~p---q~~lL~~~~~~~~I~H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~ 417 (481)
+.++| +.++|..++++.|+|+ =|.||++-.+..|+|+++- -+-+.|... .+.|+-+--+. +.++..
T Consensus 212 ~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl--~e~gv~Vlf~~----d~L~~~ 282 (322)
T PRK02797 212 TEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDL--TEQGLPVLFTG----DDLDED 282 (322)
T ss_pred hhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHH--HhCCCeEEecC----CcccHH
Confidence 45554 6789999999888886 5899999999999999874 233444444 26677775443 778888
Q ss_pred HHHHHHHHH
Q 011608 418 EIEMMVRRI 426 (481)
Q Consensus 418 ~l~~al~~v 426 (481)
.+.++=+++
T Consensus 283 ~v~e~~rql 291 (322)
T PRK02797 283 IVREAQRQL 291 (322)
T ss_pred HHHHHHHHH
Confidence 887774443
No 324
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=31.50 E-value=1.6e+02 Score=28.49 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=28.8
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 11 LASPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 11 ~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
++.++.|-.--.+.||++|++| |..+.+++-.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~r-G~~~gvvSRG 86 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQAR-GVRVGVVSRG 86 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhc-CCeeEEEecC
Confidence 4568899999999999999999 9999999876
No 325
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=31.42 E-value=1.7e+02 Score=27.51 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=20.7
Q ss_pred CCceeeecCCchhHHHHHc-----Ccceee-ccc
Q 011608 357 VGGFLSHCGWNSTLESIVN-----GVPLIV-WPL 384 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~-----GvP~v~-~P~ 384 (481)
.+++|.-||-||+.|++.. ..|.++ +|.
T Consensus 58 ~d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VDTVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCEEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 3489999999999997643 345454 886
No 326
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=31.19 E-value=88 Score=30.60 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=25.5
Q ss_pred hhhccccCCceeeecCCch---hHHHHHcCcceeec
Q 011608 350 EILGHASVGGFLSHCGWNS---TLESIVNGVPLIVW 382 (481)
Q Consensus 350 ~lL~~~~~~~~I~HgG~~s---~~eal~~GvP~v~~ 382 (481)
.++.+-+-+++|++||+=| ...|...|+|.++.
T Consensus 85 ~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 85 VRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 3455444448999999986 89999999999873
No 327
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=31.16 E-value=1.7e+02 Score=25.83 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=31.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
+.++-.|+.|=..-.++++...... |..|.|+.++.
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~e~ 50 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDTEG 50 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC
Confidence 5566678899999999999999988 99999999986
No 328
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=31.10 E-value=3.2e+02 Score=23.00 Aligned_cols=138 Identities=17% Similarity=0.217 Sum_probs=66.8
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccC
Q 011608 267 IYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWA 346 (481)
Q Consensus 267 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~ 346 (481)
|-|-+|| ..+.+..+++...|+..+..+-..+-+. ...|+.+.+ ++
T Consensus 3 V~Ii~gs--~SD~~~~~~a~~~L~~~gi~~~~~V~sa---------------------HR~p~~l~~-----------~~ 48 (150)
T PF00731_consen 3 VAIIMGS--TSDLPIAEEAAKTLEEFGIPYEVRVASA---------------------HRTPERLLE-----------FV 48 (150)
T ss_dssp EEEEESS--GGGHHHHHHHHHHHHHTT-EEEEEE--T---------------------TTSHHHHHH-----------HH
T ss_pred EEEEeCC--HHHHHHHHHHHHHHHHcCCCEEEEEEec---------------------cCCHHHHHH-----------HH
Confidence 4555665 3466778899999999987766655332 234443322 22
Q ss_pred chhhhhccccCCceeeecCCchhHHHH---HcCcceeecccccchhhhH----HHHHHhhceeEeccccCCCCccCHHHH
Q 011608 347 PQVEILGHASVGGFLSHCGWNSTLESI---VNGVPLIVWPLYAEQKMNA----TMLAEELGVAVRPNEMPTENLVKREEI 419 (481)
Q Consensus 347 pq~~lL~~~~~~~~I~HgG~~s~~eal---~~GvP~v~~P~~~DQ~~na----~~v~~~~G~g~~~~~~~~~~~~~~~~l 419 (481)
... .+..+++||.=.|...-.-.+ ..-.|+|.+|....+.... ..+.--.|+++..-.+ ++..++.-+
T Consensus 49 ~~~---~~~~~~viIa~AG~~a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i--~~~~nAA~~ 123 (150)
T PF00731_consen 49 KEY---EARGADVIIAVAGMSAALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI--NNGFNAALL 123 (150)
T ss_dssp HHT---TTTTESEEEEEEESS--HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS--THHHHHHHH
T ss_pred HHh---ccCCCEEEEEECCCcccchhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc--cCchHHHHH
Confidence 111 112234788777754333222 2378999999987644322 2221122555433111 122344444
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 011608 420 EMMVRRILVDKEGQALRSRVKELKHSAK 447 (481)
Q Consensus 420 ~~al~~vl~~~~~~~~r~~a~~l~~~~~ 447 (481)
+-.|- -+.|++ ++++.+..+++.+
T Consensus 124 A~~IL-a~~d~~---l~~kl~~~~~~~~ 147 (150)
T PF00731_consen 124 AARIL-ALKDPE---LREKLRAYREKMK 147 (150)
T ss_dssp HHHHH-HTT-HH---HHHHHHHHHHHHH
T ss_pred HHHHH-hcCCHH---HHHHHHHHHHHHH
Confidence 44442 233555 7777777777644
No 329
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=30.83 E-value=2e+02 Score=27.71 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=34.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCch
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTS 47 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (481)
--|+++-.++.|-..-...||..|+.+ |++|.++....+..
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D~~r~ 155 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGDTFRA 155 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCccch
Confidence 356677778889999999999999999 99999999876553
No 330
>COG1422 Predicted membrane protein [Function unknown]
Probab=30.57 E-value=2.1e+02 Score=25.28 Aligned_cols=46 Identities=17% Similarity=0.406 Sum_probs=30.6
Q ss_pred HHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 011608 419 IEMMVRRILVD-KEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQ 466 (481)
Q Consensus 419 l~~al~~vl~~-~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 466 (481)
+..-+++.+.| ++-+++++.+++.+++.++|-+++.. ..++++-++
T Consensus 60 ~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~--~~lkkLq~~ 106 (201)
T COG1422 60 YITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDM--KKLKKLQEK 106 (201)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHH
Confidence 34456667777 66778999999999999987444332 344444433
No 331
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=30.53 E-value=60 Score=29.55 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCCeEEEEecC
Q 011608 22 VLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 22 ~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
-.+||++|.++ ||+|+++...
T Consensus 29 G~aLA~~L~~~-G~~V~li~r~ 49 (229)
T PRK06732 29 GKIIAETFLAA-GHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHHhC-CCEEEEEECc
Confidence 46889999999 9999999754
No 332
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=30.45 E-value=79 Score=27.35 Aligned_cols=34 Identities=9% Similarity=-0.032 Sum_probs=22.8
Q ss_pred HHhhcCCCCcEEEEcCCCch--HHHHHHHhCCceEEEe
Q 011608 100 SISTLKPRPTALFADLFGTE--AFQIADEFEMLKYVYI 135 (481)
Q Consensus 100 ~l~~~~~~~D~VI~D~~~~~--~~~~A~~~giP~v~~~ 135 (481)
.+..+ +||+||....... ....-++.|||++.+.
T Consensus 64 ~ll~l--~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 64 LIVAL--KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HHhcc--CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 34445 9999997654433 3345678999998764
No 333
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=30.44 E-value=58 Score=26.78 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=23.3
Q ss_pred cCHHHHHHHHHHHHhCCCCeEEEEecCCCch
Q 011608 17 GHFIPVLELGKRFATQNDFQVTIFVVATDTS 47 (481)
Q Consensus 17 GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (481)
-.+.-++-|+..|+++ ||+|++++++....
T Consensus 11 vq~p~alYl~~~Lk~~-G~~v~Va~npAA~k 40 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKK-GFEVVVAGNPAALK 40 (139)
T ss_dssp THHHHHHHHHHHHHCT-TEEEEEEE-HHHHH
T ss_pred chhHHHHHHHHHHHhc-CCeEEEecCHHHHh
Confidence 3455678899999999 99999999994333
No 334
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=30.41 E-value=72 Score=32.63 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=37.3
Q ss_pred CCceeeecCCchhHHHHHc----CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIVN----GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
++++|+=||-||++.|... ++|++.+ |.. .+|. . ..++.+++.++|.+++.++
T Consensus 263 ~DlVIsiGGDGTlL~Aar~~~~~~iPILGI--------N~G----~LGF--L-------t~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 263 VDLVITLGGDGTVLWAASMFKGPVPPVVPF--------SMG----SLGF--M-------TPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEE--------eCC----Ccce--e-------cccCHHHHHHHHHHHHcCC
Confidence 4599999999999999874 4565544 221 2232 2 3367889999999998764
No 335
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.12 E-value=84 Score=33.10 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=38.1
Q ss_pred CCceeeecCCchhHHHHHc----CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIVN----GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
+.++|+-||-||+..+.+. ++|++.+-+ - .+|. . ...+.+++.++|++++.++
T Consensus 349 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~--------G----~lGF--L-------~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 349 ISHIISIGGDGTVLRASKLVNGEEIPIICINM--------G----TVGF--L-------TEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC--------C----CCCc--C-------cccCHHHHHHHHHHHHcCC
Confidence 4599999999999999774 667766543 1 1222 2 3457788999999988654
No 336
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=29.93 E-value=53 Score=30.86 Aligned_cols=54 Identities=7% Similarity=0.115 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhh
Q 011608 416 REEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEMSLQGLMAKV 478 (481)
Q Consensus 416 ~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 478 (481)
.+.+.+++++++++++ |++.+++..-. ..-.......+++++-....+.|+.|.
T Consensus 219 ~~~l~~a~~~~~~~pe---~~~~~~~~g~~------~~~~~~~~~~~~l~~~~~~~~~l~~~~ 272 (274)
T PF03401_consen 219 VDKLADAIKKALEDPE---FQEFLEKMGLE------PVYMDGEEFDAFLAEEYARYKALIKEL 272 (274)
T ss_dssp HHHHHHHHHHHHT-HH---HHHHHHHHTEE------EECESHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHH---HHHHHHHCCCc------CCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 3667788888888887 88776665544 224555778888888888888887764
No 337
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=29.89 E-value=3.9e+02 Score=23.58 Aligned_cols=101 Identities=11% Similarity=0.085 Sum_probs=58.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc-hhhhhh-ccCCCCCCceEEEecCCCCCCCCCCCCccHHHH
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDT-STVQSQ-LRNLPNPHLFNIVSLPPVDISALLDADASIVIK 85 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 85 (481)
|.+++-.+.|-....+.+|-+-.-+ |.+|-++-.-.-. ..-+.. +...+ ..+.|+.++....-. ....+. .
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~Gh-G~rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~~g~tw~--~~~~~~--d 103 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGH-GLRVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMGEGFTWE--TQDREA--D 103 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcC-CCEEEEEEEeecCcchhHHHHHHhhc--cceeEEecCCceeCC--CcCcHH--H
Confidence 6677778999998888888777777 8888877543221 000111 22322 357788777422211 111111 1
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCc
Q 011608 86 IIFMMRESLPALRSSISTLKPRPTALFADLFGT 118 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~ 118 (481)
. ......-+...+.+++- +.|+||.|-++.
T Consensus 104 ~-~aa~~~w~~a~~~l~~~--~ydlviLDEl~~ 133 (198)
T COG2109 104 I-AAAKAGWEHAKEALADG--KYDLVILDELNY 133 (198)
T ss_pred H-HHHHHHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 1 33334445555666655 999999997655
No 338
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=29.54 E-value=56 Score=28.66 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCCeEEEEecCC
Q 011608 22 VLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 22 ~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
...||+++..+ |++||++..+.
T Consensus 32 G~~lA~~~~~~-Ga~V~li~g~~ 53 (185)
T PF04127_consen 32 GAALAEEAARR-GAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHT-T-EEEEEE-TT
T ss_pred HHHHHHHHHHC-CCEEEEEecCc
Confidence 57899999999 99999999993
No 339
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=29.41 E-value=2.3e+02 Score=27.45 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=57.8
Q ss_pred CCcEEEEEeCCC----CCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCC
Q 011608 263 TESVIYVSFGGG----GTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKM 338 (481)
Q Consensus 263 ~~~vv~vs~GS~----~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 338 (481)
+++.|.+.-|+. ..++.+.+.++++.+...+.++++. +++.+ ...-....+.....
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~-Gg~~e-------------------~~~~~~i~~~~~~~ 238 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLF-GSAKD-------------------HEAGNEILAALNTE 238 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEE-eCHHh-------------------HHHHHHHHHhcccc
Confidence 456888888773 3467888899998887666665543 33211 00111111111110
Q ss_pred ---C-cccccc--Cch-hhhhccccCCceeeecCCchhHHHHHcCcceeec
Q 011608 339 ---G-LVVPDW--APQ-VEILGHASVGGFLSHCGWNSTLESIVNGVPLIVW 382 (481)
Q Consensus 339 ---~-~~v~~~--~pq-~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~ 382 (481)
+ +-+.+- +.+ .+++.+++ +||+.= -|-++=|.+.|+|+|++
T Consensus 239 ~~~~~~~l~g~~sL~el~ali~~a~--l~I~nD-TGp~HlAaA~g~P~val 286 (348)
T PRK10916 239 QQAWCRNLAGETQLEQAVILIAACK--AIVTND-SGLMHVAAALNRPLVAL 286 (348)
T ss_pred cccceeeccCCCCHHHHHHHHHhCC--EEEecC-ChHHHHHHHhCCCEEEE
Confidence 1 112122 333 56888877 888865 46789999999999975
No 340
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=28.96 E-value=1.3e+02 Score=27.86 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=34.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-+++...++.|-..-..+++..+....|+.|.|++.+.....+...
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r 77 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARR 77 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHH
Confidence 3556666889999999999988854328999999998765544443
No 341
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=28.90 E-value=3.7e+02 Score=23.02 Aligned_cols=85 Identities=15% Similarity=0.236 Sum_probs=44.3
Q ss_pred EEecChhhhcHHHHHHHHhccCCCCCeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHH
Q 011608 207 ILINTWEDLEPTTLASLRDGISKLPPIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVA 286 (481)
Q Consensus 207 ~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~ 286 (481)
.++-+.++........+... .|.+..+|-....-... ..+++.+.+....+. +|+|++|+ |.+-.-+.
T Consensus 50 ~llG~~~~~~~~~~~~l~~~---yp~l~i~g~~~g~~~~~---~~~~i~~~I~~~~pd-iv~vglG~-----PkQE~~~~ 117 (171)
T cd06533 50 FLLGAKPEVLEKAAERLRAR---YPGLKIVGYHHGYFGPE---EEEEIIERINASGAD-ILFVGLGA-----PKQELWIA 117 (171)
T ss_pred EEECCCHHHHHHHHHHHHHH---CCCcEEEEecCCCCChh---hHHHHHHHHHHcCCC-EEEEECCC-----CHHHHHHH
Confidence 34444544444444445544 34555555333221111 344477778776655 99999996 22222223
Q ss_pred HHHHhCCCcEEEEEcCC
Q 011608 287 WGLELSQQRFIWVVRPP 303 (481)
Q Consensus 287 ~al~~~~~~~i~~~~~~ 303 (481)
+.....+..++..++..
T Consensus 118 ~~~~~l~~~v~~~vG~~ 134 (171)
T cd06533 118 RHKDRLPVPVAIGVGGS 134 (171)
T ss_pred HHHHHCCCCEEEEecee
Confidence 33334566777777654
No 342
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=28.49 E-value=1.3e+02 Score=30.09 Aligned_cols=44 Identities=9% Similarity=0.123 Sum_probs=31.4
Q ss_pred HHHhhHHHHHHHhhcCCCCcEEEEcCCCchH------H----HHHHHhCCceEEEe
Q 011608 90 MRESLPALRSSISTLKPRPTALFADLFGTEA------F----QIADEFEMLKYVYI 135 (481)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~------~----~~A~~~giP~v~~~ 135 (481)
.+.....+.+.+++. +||++|+.+.+..+ . .+.++++||.+.-.
T Consensus 61 ~eea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 61 LEEAVARVLEMLKDK--EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 445556777888888 99999998755431 1 25667999998743
No 343
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=28.39 E-value=1.3e+02 Score=30.09 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=31.5
Q ss_pred HHHhhHHHHHHHhhcCCCCcEEEEcCCCchH------H----HHHHHhCCceEEEe
Q 011608 90 MRESLPALRSSISTLKPRPTALFADLFGTEA------F----QIADEFEMLKYVYI 135 (481)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~------~----~~A~~~giP~v~~~ 135 (481)
.+.....+.+.+++. +||++|+.+.+..+ . .+.++++||.+.-.
T Consensus 61 ~eea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 61 LEEAKAKVLEMIKGA--NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 455557778888888 99999998755431 1 24667999998743
No 344
>PRK14974 cell division protein FtsY; Provisional
Probab=28.34 E-value=1.8e+02 Score=28.23 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=35.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
.-|+|+-.++.|-..-...||..|.++ |++|.++....++..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~-g~~V~li~~Dt~R~~ 182 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKN-GFSVVIAAGDTFRAG 182 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcCcHH
Confidence 467778889999999999999999999 999999887766543
No 345
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=28.33 E-value=2.7e+02 Score=26.41 Aligned_cols=70 Identities=9% Similarity=-0.098 Sum_probs=40.6
Q ss_pred CeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcC
Q 011608 232 PIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRP 302 (481)
Q Consensus 232 ~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 302 (481)
+-.++|-...++..+ ...-.+++....+.+-+++-+-........+...+..+.++++.+|.++.+-++.
T Consensus 97 pdrf~~~~~v~p~~~-~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 97 PDRFVGFARVDPRDP-EAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred CcceeeeeeeCCCch-HHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCC
Confidence 355666555443221 0134466666665443333333333334455556789999999999999886543
No 346
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=28.29 E-value=4e+02 Score=25.23 Aligned_cols=76 Identities=17% Similarity=0.065 Sum_probs=46.3
Q ss_pred cccCCceeeecCCchhHHHHHcCcceeeccccc--chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 354 HASVGGFLSHCGWNSTLESIVNGVPLIVWPLYA--EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 354 ~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
|++ +.=.+.|.+.+..|+.+|+...++-.+. +..+-+.-+. ..-+.+. ..-|.++|.+.+.++- -.-
T Consensus 194 HpS--LLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~---Q~~v~I~-----~~dt~~~L~~r~~~~E-~~~ 262 (286)
T PRK13011 194 HHS--FLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIE---QDVERVD-----HAYSPEDLVAKGRDVE-CLT 262 (286)
T ss_pred ccc--cCCCCCCCcHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEE---EEEEEcC-----CCCCHHHHHHHHHHHH-HHH
Confidence 444 4445568889999999999998888752 3334443332 2233443 3458899998887643 222
Q ss_pred hHHHHHHHHHHH
Q 011608 432 GQALRSRVKELK 443 (481)
Q Consensus 432 ~~~~r~~a~~l~ 443 (481)
|-+..+.+.
T Consensus 263 ---~~~ai~~~~ 271 (286)
T PRK13011 263 ---LARAVKAHI 271 (286)
T ss_pred ---HHHHHHHHH
Confidence 554444443
No 347
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=28.24 E-value=1.2e+02 Score=26.59 Aligned_cols=45 Identities=20% Similarity=0.238 Sum_probs=29.8
Q ss_pred hHHHHHHHhhcCCCCcEEEEcC-CCchHHHHHHHhCCceEEEechh
Q 011608 94 LPALRSSISTLKPRPTALFADL-FGTEAFQIADEFEMLKYVYIASN 138 (481)
Q Consensus 94 ~~~~~~~l~~~~~~~D~VI~D~-~~~~~~~~A~~~giP~v~~~~~~ 138 (481)
...+.+++++...+..++|... -.+++..+|+++++|.|.+.|+.
T Consensus 46 ~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 46 IAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 3455677777622234666554 34446689999999999887754
No 348
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=27.98 E-value=82 Score=27.68 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=30.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
||++--.++.|=+.-.+.+.++|.+. |++|+++.++.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~-g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDE-GAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhC-cCEEEEEEchh
Confidence 56666667777777767999999999 99999999884
No 349
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=27.75 E-value=4.9e+02 Score=23.99 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=29.3
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 7 HIALLAS-PGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 7 ~vvl~~~-p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
.|++++. ++.|=..-..+||..|++. |++|..+=-.
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~-G~~VlaID~d 39 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARL-GESVLAIDLD 39 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 3555554 8889999999999999999 9999887543
No 350
>PRK11914 diacylglycerol kinase; Reviewed
Probab=27.70 E-value=1.5e+02 Score=28.33 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=23.1
Q ss_pred CceeeecCCchhHHHH----HcCcceeeccc
Q 011608 358 GGFLSHCGWNSTLESI----VNGVPLIVWPL 384 (481)
Q Consensus 358 ~~~I~HgG~~s~~eal----~~GvP~v~~P~ 384 (481)
+++|--||-||+.|++ ..++|+-++|.
T Consensus 66 d~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 66 DALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred CEEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 4899999999999987 34789999996
No 351
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=27.57 E-value=62 Score=32.72 Aligned_cols=26 Identities=31% Similarity=0.449 Sum_probs=21.8
Q ss_pred CCceeeecCCc------hhHHHHHcCcceeec
Q 011608 357 VGGFLSHCGWN------STLESIVNGVPLIVW 382 (481)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~v~~ 382 (481)
.+++++|.|-| .+.||...++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 44788888754 778999999999998
No 352
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.46 E-value=1.1e+02 Score=28.61 Aligned_cols=53 Identities=8% Similarity=0.184 Sum_probs=36.5
Q ss_pred CCceeeecCCchhHHHHHc-CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIVN-GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~-GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
+.++|+=||-||+..+... .+|++.+-. -+ +|.. ...+.+++.++|+++++++
T Consensus 53 ~D~vi~lGGDGT~L~a~~~~~~PilGIN~--------G~------lGFL-------~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 53 ADVIITIGGDGTILRTLQRAKGPILGINM--------GG------LGFL-------TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCEEEEEcCcHHHHHHHHHcCCCEEEEEC--------CC------CccC-------cccCHHHHHHHHHHHHcCC
Confidence 4599999999999999884 445444322 11 1222 3467889999999999764
No 353
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=27.43 E-value=2.2e+02 Score=23.46 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=38.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
.+|++-+..+-+|-.----++..|.+. |++|+.+...-..+.+.+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~-GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNA-GFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHC-CCEEEECCCCCCHHHHHHH
Confidence 478999999999999999999999999 9999999887554444443
No 354
>PRK14099 glycogen synthase; Provisional
Probab=27.31 E-value=95 Score=31.95 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=39.0
Q ss_pred CCceee---ecCCc-hhHHHHHcCcceeeccccc--chhhhHHHHHHh--hceeEeccccCCCCccCHHHHHHHHHH---
Q 011608 357 VGGFLS---HCGWN-STLESIVNGVPLIVWPLYA--EQKMNATMLAEE--LGVAVRPNEMPTENLVKREEIEMMVRR--- 425 (481)
Q Consensus 357 ~~~~I~---HgG~~-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~--~G~g~~~~~~~~~~~~~~~~l~~al~~--- 425 (481)
.++||. +=|.| +.+||+++|+|.|+....+ |.-.......+. -+.|..++. -+.+++.++|.+
T Consensus 370 aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~------~d~~~La~ai~~a~~ 443 (485)
T PRK14099 370 ADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP------VTADALAAALRKTAA 443 (485)
T ss_pred CCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC------CCHHHHHHHHHHHHH
Confidence 336664 34444 6789999998777754322 321111110011 146777653 378999999987
Q ss_pred HhcCC
Q 011608 426 ILVDK 430 (481)
Q Consensus 426 vl~~~ 430 (481)
++.|+
T Consensus 444 l~~d~ 448 (485)
T PRK14099 444 LFADP 448 (485)
T ss_pred HhcCH
Confidence 45454
No 355
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=27.30 E-value=2.1e+02 Score=27.44 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=28.1
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 12 ASPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 12 ~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
+.+++|-.--...|++.|.++ |+++.+++-.
T Consensus 37 tvGGTGKTP~v~~La~~l~~~-G~~~~IlSRG 67 (311)
T TIGR00682 37 SVGGTGKTPVVVWLAELLKDR-GLRVGVLSRG 67 (311)
T ss_pred ccCCcChHHHHHHHHHHHHHC-CCEEEEECCC
Confidence 358899999999999999999 9999999876
No 356
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=27.29 E-value=54 Score=30.19 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 20 IPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 20 ~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
...-.|+++|+++ ||+|++++|-.
T Consensus 20 dv~~~L~kaL~~~-G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQ-GHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHT-T-EEEEEEE-T
T ss_pred HHHHHHHHHHHhc-CCeEEEEEccc
Confidence 3456799999999 99999999884
No 357
>PRK05858 hypothetical protein; Provisional
Probab=27.20 E-value=2.5e+02 Score=29.28 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=22.0
Q ss_pred CCceeeecCCc------hhHHHHHcCcceeecc
Q 011608 357 VGGFLSHCGWN------STLESIVNGVPLIVWP 383 (481)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~v~~P 383 (481)
.++++.|.|-| ++++|...++|+|++.
T Consensus 68 ~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 68 PGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred CeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 34778887744 8899999999999985
No 358
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=27.16 E-value=2.3e+02 Score=26.01 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhCCCC-eEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHHHHHHhhHHH
Q 011608 19 FIPVLELGKRFATQNDF-QVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIFMMRESLPAL 97 (481)
Q Consensus 19 i~P~l~La~~L~~r~Gh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (481)
++|..++..+|+.. |. +|.+++| |.+.+...+..+-...|+....+......+. .+ + .+...+.+
T Consensus 105 tt~~~A~~~AL~al-g~~RIalvTP--Y~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~----~~----i---a~i~p~~i 170 (239)
T TIGR02990 105 VTPSSAAVDGLAAL-GVRRISLLTP--YTPETSRPMAQYFAVRGFEIVNFTCLGLTDD----RE----M---ARISPDCI 170 (239)
T ss_pred eCHHHHHHHHHHHc-CCCEEEEECC--CcHHHHHHHHHHHHhCCcEEeeeeccCCCCC----ce----e---eecCHHHH
Confidence 35667777777777 54 4555444 3333333322211113566655533211111 01 0 11112233
Q ss_pred HHHHhhc-CCCCcEEEEcCCCchHHH----HHHHhCCceEEE
Q 011608 98 RSSISTL-KPRPTALFADLFGTEAFQ----IADEFEMLKYVY 134 (481)
Q Consensus 98 ~~~l~~~-~~~~D~VI~D~~~~~~~~----~A~~~giP~v~~ 134 (481)
.+.+++. ...+|+|+.-.....++. +=+++|+|++.-
T Consensus 171 ~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsS 212 (239)
T TIGR02990 171 VEAALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVVTS 212 (239)
T ss_pred HHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEH
Confidence 3333333 337899886665555543 445579998763
No 359
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=27.05 E-value=3.4e+02 Score=23.85 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=41.5
Q ss_pred cE-EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCC---chhhhhhccCCCCCCceEEEecCC
Q 011608 6 TH-IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATD---TSTVQSQLRNLPNPHLFNIVSLPP 69 (481)
Q Consensus 6 ~~-vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~ 69 (481)
.+ |+|+..+..-|---+..+++.|++. |.+|.+++--.. .+.++..++......+-+|+.+|.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~-~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~ 174 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKN-NVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPP 174 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHc-CCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCC
Confidence 45 7777778777877777999999999 898888875533 233333233333223567788775
No 360
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.00 E-value=1.2e+02 Score=24.65 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=24.3
Q ss_pred CccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 15 GMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 15 ~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
..-.+.-.+-+...|.++ |++||+++++
T Consensus 14 iP~qissaiYls~klkkk-gf~v~Vaate 41 (148)
T COG4081 14 IPPQISSAIYLSHKLKKK-GFDVTVAATE 41 (148)
T ss_pred CCccchHHHHHHHHhhcc-CccEEEecCH
Confidence 335677788999999999 9999999999
No 361
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=26.90 E-value=1.8e+02 Score=25.53 Aligned_cols=41 Identities=10% Similarity=-0.053 Sum_probs=27.3
Q ss_pred hHHHHHHHhhcCCCCcEEE-EcCCCc-hHHHHHHHhCCceEEEec
Q 011608 94 LPALRSSISTLKPRPTALF-ADLFGT-EAFQIADEFEMLKYVYIA 136 (481)
Q Consensus 94 ~~~~~~~l~~~~~~~D~VI-~D~~~~-~~~~~A~~~giP~v~~~~ 136 (481)
...+.+.+++. ++|+|+ .+.-.+ .+..+|..+|+|.+...-
T Consensus 39 ~~~la~~~~~~--~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 39 GKEFARRFKDE--GITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred HHHHHHHhccC--CCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 34444444554 899998 344333 356789999999988654
No 362
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=26.81 E-value=2.9e+02 Score=24.54 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=32.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDT 46 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (481)
.+++..+..|-..-++.-++....+ |-.|.++.+.-+.
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~-g~~v~vfkp~iD~ 44 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEA-GMKVLVFKPAIDT 44 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHc-CCeEEEEeccccc
Confidence 4556667889999999999999999 9999999998544
No 363
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=26.78 E-value=3.1e+02 Score=21.33 Aligned_cols=84 Identities=15% Similarity=0.157 Sum_probs=50.5
Q ss_pred cCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHHHHHHhhHH
Q 011608 17 GHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIFMMRESLPA 96 (481)
Q Consensus 17 GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (481)
++=.-++.+++.|.+. |+++. +++.....+.. .++.+..+.... ...+.
T Consensus 10 ~~k~~~~~~~~~l~~~-G~~l~--aT~gT~~~l~~--------~gi~~~~v~~~~--------------------~~~~~ 58 (110)
T cd01424 10 RDKPEAVEIAKRLAEL-GFKLV--ATEGTAKYLQE--------AGIPVEVVNKVS--------------------EGRPN 58 (110)
T ss_pred CcHhHHHHHHHHHHHC-CCEEE--EchHHHHHHHH--------cCCeEEEEeecC--------------------CCchh
Confidence 3556788999999999 99983 44433332222 144433332111 02244
Q ss_pred HHHHHhhcCCCCcEEEEcCCC-------chHHHHHHHhCCceEE
Q 011608 97 LRSSISTLKPRPTALFADLFG-------TEAFQIADEFEMLKYV 133 (481)
Q Consensus 97 ~~~~l~~~~~~~D~VI~D~~~-------~~~~~~A~~~giP~v~ 133 (481)
+.+.+++- ++|+||.-+-. +.-...|-.+|||+++
T Consensus 59 i~~~i~~~--~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 59 IVDLIKNG--EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHHHcC--CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 66667666 99999974321 2334678899999985
No 364
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=26.69 E-value=97 Score=32.18 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEe
Q 011608 95 PALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYI 135 (481)
Q Consensus 95 ~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~ 135 (481)
..+.+.|++. +||+||.+. +...+|+++|||++.++
T Consensus 364 ~ei~~~I~~~--~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARV--EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhc--CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 3445666666 899999886 45556899999998765
No 365
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=26.41 E-value=5.6e+02 Score=24.47 Aligned_cols=96 Identities=11% Similarity=0.058 Sum_probs=57.7
Q ss_pred CCcEEEEEeCCC----CCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCC
Q 011608 263 TESVIYVSFGGG----GTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKM 338 (481)
Q Consensus 263 ~~~vv~vs~GS~----~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 338 (481)
.++.|.+.-|+. -.++.+.+.++++.+.+.+.++++. +++.+ ...-+.+.+..+.
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~-G~~~e-------------------~~~~~~i~~~~~~- 231 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLF-GSAKD-------------------HPAGNEIEALLPG- 231 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEE-EChhh-------------------HHHHHHHHHhCCc-
Confidence 355788887763 3478888899999887766665544 33311 0011122221111
Q ss_pred Ccc-ccc--cCch-hhhhccccCCceeeecCCchhHHHHHcCcceeec
Q 011608 339 GLV-VPD--WAPQ-VEILGHASVGGFLSHCGWNSTLESIVNGVPLIVW 382 (481)
Q Consensus 339 ~~~-v~~--~~pq-~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~ 382 (481)
+++ +.+ .+.+ .+++++++ +||+.= .|-++=|.+.|+|+|++
T Consensus 232 ~~~~l~g~~sL~el~ali~~a~--l~I~~D-SGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 232 ELRNLAGETSLDEAVDLIALAK--AVVTND-SGLMHVAAALNRPLVAL 276 (334)
T ss_pred ccccCCCCCCHHHHHHHHHhCC--EEEeeC-CHHHHHHHHcCCCEEEE
Confidence 111 112 2333 56888877 899875 45788899999999975
No 366
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=26.08 E-value=4.4e+02 Score=24.97 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=39.4
Q ss_pred eeeecCCchhHHHHHcCcceeeccccc--chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHh
Q 011608 360 FLSHCGWNSTLESIVNGVPLIVWPLYA--EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRIL 427 (481)
Q Consensus 360 ~I~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl 427 (481)
.=...|.+....|+.+|+...++-.+. +..+.+.-+. + --+.+. ..-|.++|.+.+.++.
T Consensus 202 LP~f~G~~~~~~ai~~G~k~tG~TvH~v~~~lD~GpII~-Q--~~v~V~-----~~dt~e~L~~r~~~~E 263 (289)
T PRK13010 202 LPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIE-Q--DVERVD-----HSYSPEDLVAKGRDVE 263 (289)
T ss_pred CCCCCCCCHHHHHHHcCCCeEEEEEEEEcCCCCCCCceE-E--EEEEcC-----CCCCHHHHHHHHHHHH
Confidence 333468889999999999999888762 4445554442 3 233333 3347888888886644
No 367
>PRK13604 luxD acyl transferase; Provisional
Probab=26.03 E-value=1.4e+02 Score=28.66 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEE
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIF 40 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~ 40 (481)
+...+++..+..++-.-+..+|+.|.++ |+.|.-+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~-G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSN-GFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHC-CCEEEEe
Confidence 3467788888888887799999999999 9987665
No 368
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=25.94 E-value=2.3e+02 Score=29.78 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=22.6
Q ss_pred CCceeeecCCc------hhHHHHHcCcceeecc
Q 011608 357 VGGFLSHCGWN------STLESIVNGVPLIVWP 383 (481)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~v~~P 383 (481)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44899998855 7889999999999983
No 369
>PRK13059 putative lipid kinase; Reviewed
Probab=25.82 E-value=2.3e+02 Score=26.83 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=22.8
Q ss_pred CCceeeecCCchhHHHH------HcCcceeeccc
Q 011608 357 VGGFLSHCGWNSTLESI------VNGVPLIVWPL 384 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal------~~GvP~v~~P~ 384 (481)
.+.+|.-||-||+.|++ ..++|+-++|.
T Consensus 57 ~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 57 YKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred CCEEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 34899999999998885 23588999997
No 370
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=25.78 E-value=2.1e+02 Score=31.23 Aligned_cols=43 Identities=33% Similarity=0.404 Sum_probs=38.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
+++|.|=..|+-|-.+-|+.=|+++.+. |.+|.+-.-|+..+.
T Consensus 22 klkIf~G~apGVGKTyaML~~a~~~~~~-G~DvviG~vEtHgR~ 64 (890)
T COG2205 22 KLKIFLGAAPGVGKTYAMLSEAQRLLAE-GVDVVIGVVETHGRR 64 (890)
T ss_pred ceEEEeecCCCccHHHHHHHHHHHHHHc-CCcEEEEEecCCCch
Confidence 3899999999999999999999999999 999999998866544
No 371
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.76 E-value=74 Score=27.51 Aligned_cols=42 Identities=5% Similarity=0.086 Sum_probs=27.8
Q ss_pred HHHHHHHhhc-CCCCcEEEEcCCCchHHHHHHHhCCceEEEechhH
Q 011608 95 PALRSSISTL-KPRPTALFADLFGTEAFQIADEFEMLKYVYIASNA 139 (481)
Q Consensus 95 ~~~~~~l~~~-~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~ 139 (481)
..+...+++. ..+.|+||.+.. +..+|+++|+|++.+.++..
T Consensus 112 ~e~~~~i~~~~~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 112 EEIEAAIKQAKAEGVDVIVGGGV---VCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp HHHHHHHHHHHHTT--EEEESHH---HHHHHHHTTSEEEESS--HH
T ss_pred HHHHHHHHHHHHcCCcEEECCHH---HHHHHHHcCCcEEEEEecHH
Confidence 4555555554 448999999863 46889999999998877543
No 372
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=25.64 E-value=3.6e+02 Score=26.60 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=26.7
Q ss_pred CCcEEEEEc-CCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 4 TKTHIALLA-SPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 4 ~~~~vvl~~-~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
..++|.++- .|..|. .+|+.|.++ ||+|++....
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~-G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLS-GYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHC-CCeEEEeCCC
Confidence 346788886 676664 588999999 9999999864
No 373
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=25.58 E-value=1.1e+02 Score=31.87 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=26.6
Q ss_pred HHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEec
Q 011608 96 ALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIA 136 (481)
Q Consensus 96 ~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~ 136 (481)
.+.+.+++. +||+||.+. ....+|+++|+|++.+..
T Consensus 355 ei~~~i~~~--~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAAL--EPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhc--CCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 444555555 899999886 456789999999987543
No 374
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=25.55 E-value=1.3e+02 Score=26.92 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=28.8
Q ss_pred hHHHHHHHhhcCCCCcEEEEcCCCc-------hHHHHHHHhCCceEEEec
Q 011608 94 LPALRSSISTLKPRPTALFADLFGT-------EAFQIADEFEMLKYVYIA 136 (481)
Q Consensus 94 ~~~~~~~l~~~~~~~D~VI~D~~~~-------~~~~~A~~~giP~v~~~~ 136 (481)
.+.+.++++++..++|+|++|-... .|..++-.+++|+|.+.=
T Consensus 76 ~P~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK 125 (206)
T PF04493_consen 76 LPCILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAK 125 (206)
T ss_dssp HHHHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEES
T ss_pred HHHHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEeC
Confidence 5778888888877899999994332 244677778899998653
No 375
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.43 E-value=2.3e+02 Score=28.04 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=37.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
--|+|+-.-+.|-..---.||..++++ |+.+-+++...++..+-.+
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkk-G~K~~LvcaDTFRagAfDQ 147 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKK-GYKVALVCADTFRAGAFDQ 147 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhc-CCceeEEeecccccchHHH
Confidence 346677777889999999999999999 9999999999777554433
No 376
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=25.38 E-value=59 Score=30.00 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=22.2
Q ss_pred CCceeeecCCchhHHHHHc----Ccceeeccc
Q 011608 357 VGGFLSHCGWNSTLESIVN----GVPLIVWPL 384 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~----GvP~v~~P~ 384 (481)
++++|+-||-||+..+++. ++|.+.+-.
T Consensus 26 ~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADVIVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 4499999999999988664 677777654
No 377
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=25.34 E-value=67 Score=28.14 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=24.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
|+|.++. +.|++ --.|.++...| ||+||-++-.+
T Consensus 1 mKIaiIg--AsG~~--Gs~i~~EA~~R-GHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIG--ASGKA--GSRILKEALKR-GHEVTAIVRNA 34 (211)
T ss_pred CeEEEEe--cCchh--HHHHHHHHHhC-CCeeEEEEeCh
Confidence 4455553 44554 34688999999 99999999774
No 378
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=25.28 E-value=1.1e+02 Score=30.29 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=47.0
Q ss_pred CCceeeecCCchhHHHHHcC-----------------cceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHH
Q 011608 357 VGGFLSHCGWNSTLESIVNG-----------------VPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEI 419 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~G-----------------vP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l 419 (481)
.+.++|.||-.+.+-|+.+. .|.|.++-.. ++-+.+- +.-+|+|++.-+.+++.+++.++|
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Ka-a~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKA-ARILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHH-HHHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHh-cceeeeEEEEecCCcchhhhHHHh
Confidence 34789999988887775332 4667776655 3555544 468899965543444467899999
Q ss_pred HHHHHHHhcC
Q 011608 420 EMMVRRILVD 429 (481)
Q Consensus 420 ~~al~~vl~~ 429 (481)
+++|++...+
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9999887643
No 379
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=25.12 E-value=1.1e+02 Score=31.72 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=26.1
Q ss_pred HHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEe
Q 011608 96 ALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYI 135 (481)
Q Consensus 96 ~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~ 135 (481)
.+.+.+++. +||+||.+. ....+|+++|||++.+.
T Consensus 353 el~~~i~~~--~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEA--APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhc--CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 445556666 899999775 45578999999998754
No 380
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=25.06 E-value=3.6e+02 Score=26.65 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred eCCcccCCCCCCCCCchhhhhhhcc--------------CCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEc
Q 011608 236 IGPVVRSMGSSHMSENSSLLEWLDM--------------QPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVR 301 (481)
Q Consensus 236 vGpl~~~~~~~~~~~~~~~~~~l~~--------------~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 301 (481)
.|+++++.. .-....+|... .+...-..||+ ..=...-+..+++++++.+.++...+
T Consensus 145 TGGLLrE~~-----l~~~r~~f~~~~~~~~~~~~~lg~~~~~~~~~~vsl---F~Ye~~~l~~ll~~~~~~~~pv~llv- 215 (374)
T PF10093_consen 145 TGGLLREPD-----LLARRDAFQADPAARAAFLRRLGLPEPEPGALRVSL---FCYENAALASLLDAWAASPKPVHLLV- 215 (374)
T ss_pred CcceeccCc-----HHHHHHHHhcCHHHHHHHHHHcCCCCCCCCCeEEEE---EeCCchHHHHHHHHHhcCCCCeEEEe-
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCCCchhH-------------HhhhcCCCccccccCch---hhhhccccCCceeeecC
Q 011608 302 PPMDNDVSGSFFKVGDGSSDGTPDYLPDGF-------------LTRNAKMGLVVPDWAPQ---VEILGHASVGGFLSHCG 365 (481)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~-------------~~~~~~~~~~v~~~~pq---~~lL~~~~~~~~I~HgG 365 (481)
..+.....+ ....+.-.+.+.+|+|| +.+|-.|+ +--==|
T Consensus 216 ---------------------p~g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD---~NfVRG 271 (374)
T PF10093_consen 216 ---------------------PEGRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACD---FNFVRG 271 (374)
T ss_pred ---------------------cCCccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCc---cceEec
Q ss_pred CchhHHHHHcCccee
Q 011608 366 WNSTLESIVNGVPLI 380 (481)
Q Consensus 366 ~~s~~eal~~GvP~v 380 (481)
=-|+.-|..+|+|+|
T Consensus 272 EDSfVRAqwAgkPFv 286 (374)
T PF10093_consen 272 EDSFVRAQWAGKPFV 286 (374)
T ss_pred chHHHHHHHhCCCce
No 381
>PRK04940 hypothetical protein; Provisional
Probab=25.04 E-value=1.3e+02 Score=26.17 Aligned_cols=32 Identities=13% Similarity=-0.028 Sum_probs=24.8
Q ss_pred CCcEEEEc-CCCchHHHHHHHhCCceEEEechh
Q 011608 107 RPTALFAD-LFGTEAFQIADEFEMLKYVYIASN 138 (481)
Q Consensus 107 ~~D~VI~D-~~~~~~~~~A~~~giP~v~~~~~~ 138 (481)
+++++|.. .-.+|+.-+|+++|+|.|.+.|+.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 46777744 556678889999999999988754
No 382
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=25.00 E-value=1.1e+02 Score=30.78 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=26.4
Q ss_pred HHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEec
Q 011608 96 ALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIA 136 (481)
Q Consensus 96 ~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~ 136 (481)
.+.+.+++. +||++|.+. ....+|+++|+|++.+..
T Consensus 361 e~~~~i~~~--~pdliig~~---~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 361 EVGDMIART--EPELIFGTQ---MERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHhh--CCCEEEecc---hhhHHHHHcCCCEEEEeC
Confidence 345556666 899999886 344568999999987653
No 383
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=24.99 E-value=1.1e+02 Score=28.23 Aligned_cols=40 Identities=13% Similarity=0.035 Sum_probs=29.3
Q ss_pred hHHHHHHHhhcCCCCcEEE--EcCCCc----hHHHHHHHhCCceEEEe
Q 011608 94 LPALRSSISTLKPRPTALF--ADLFGT----EAFQIADEFEMLKYVYI 135 (481)
Q Consensus 94 ~~~~~~~l~~~~~~~D~VI--~D~~~~----~~~~~A~~~giP~v~~~ 135 (481)
.+.+.++|++. +.|+|| +.+|.. -++.+|++.|||++.|.
T Consensus 55 ~e~l~~~l~e~--~i~llIDATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 55 AEGLAAFLREE--GIDLLIDATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred HHHHHHHHHHc--CCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 45677888888 999988 333332 24568999999999875
No 384
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=24.95 E-value=1.6e+02 Score=27.86 Aligned_cols=29 Identities=10% Similarity=0.220 Sum_probs=24.0
Q ss_pred CCCChHHHHHHHHHHHhCCCcEEEEEcCC
Q 011608 275 GTLSANQMIEVAWGLELSQQRFIWVVRPP 303 (481)
Q Consensus 275 ~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 303 (481)
...+.+..+++.+|+...+.+.||...++
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG 72 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGG 72 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 34566678999999999999999998764
No 385
>PLN02293 adenine phosphoribosyltransferase
Probab=24.88 E-value=2.6e+02 Score=24.52 Aligned_cols=43 Identities=7% Similarity=-0.052 Sum_probs=27.9
Q ss_pred HHhhHHHHHHHhhcCCCCcEEE-EcCCCc-hHHHHHHHhCCceEEEe
Q 011608 91 RESLPALRSSISTLKPRPTALF-ADLFGT-EAFQIADEFEMLKYVYI 135 (481)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~D~VI-~D~~~~-~~~~~A~~~giP~v~~~ 135 (481)
+...+.+.+.+++. ++|+|+ .+.-.. .+..+|..+|+|++...
T Consensus 48 ~~~~~~l~~~~~~~--~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~r 92 (187)
T PLN02293 48 KDTIDLFVERYRDM--GISVVAGIEARGFIFGPPIALAIGAKFVPLR 92 (187)
T ss_pred HHHHHHHHHHHhhc--CCCEEEEeCCCchHHHHHHHHHHCCCEEEEE
Confidence 33444555555555 789988 444333 46679999999987644
No 386
>PRK13768 GTPase; Provisional
Probab=24.78 E-value=3.5e+02 Score=24.95 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=31.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
-+++...++.|-..-...++..|.++ |++|.++...+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~-g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQ-GYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhc-CCceEEEECCC
Confidence 46666678889999999999999999 99999997664
No 387
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=24.74 E-value=2.6e+02 Score=28.79 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=56.1
Q ss_pred ecCCchhHHHHHcCcceeeccccc--chhhhHHH--HHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHH
Q 011608 363 HCGWNSTLESIVNGVPLIVWPLYA--EQKMNATM--LAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSR 438 (481)
Q Consensus 363 HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~--v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~ 438 (481)
=||. |=++|+.+|.+-|+.+..+ |--..... . ..-|.|.... . .+++++..++.+.+. - |+..
T Consensus 380 PcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~~-~~~gtGf~f~-----~-~~~~~l~~al~rA~~--~---y~~~ 446 (487)
T COG0297 380 PCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWLI-QGVGTGFLFL-----Q-TNPDHLANALRRALV--L---YRAP 446 (487)
T ss_pred CCcH-HHHHHHHcCCcceEcccCCccceecCccchhc-cCceeEEEEe-----c-CCHHHHHHHHHHHHH--H---hhCC
Confidence 3666 6688999999888888764 32222111 2 3457777764 2 399999999998873 1 4444
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011608 439 VKELKHSAKKASTKGGSSYNALSQVAKQC 467 (481)
Q Consensus 439 a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 467 (481)
-..++...+.++...=+-...+.+.++..
T Consensus 447 ~~~w~~~~~~~m~~d~sw~~sa~~y~~lY 475 (487)
T COG0297 447 PLLWRKVQPNAMGADFSWDLSAKEYVELY 475 (487)
T ss_pred HHHHHHHHHhhcccccCchhHHHHHHHHH
Confidence 44455555555554444445555554443
No 388
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=24.61 E-value=4.8e+02 Score=22.82 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=29.7
Q ss_pred cEEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 6 THIALLAS--PGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 6 ~~vvl~~~--p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
++++.++. ++.|-..-...||..|+++ |++|.++=...
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~-G~rVllID~D~ 56 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQA-GYKTLLIDGDM 56 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhC-CCeEEEEeCCC
Confidence 56555553 5678899999999999999 99998875443
No 389
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=24.58 E-value=2.4e+02 Score=19.34 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 011608 416 REEIEMMVRRILVD-KEGQALRSRVKELKHSAKKASTKGGSSYNALSQV 463 (481)
Q Consensus 416 ~~~l~~al~~vl~~-~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~ 463 (481)
++.|-++++..++. ++|..||-=..+++-. +-..|...+.+.++
T Consensus 7 Pe~L~~~m~~fie~hP~WDQ~Rl~~aALa~F----L~QnG~~~r~~~r~ 51 (57)
T PF10929_consen 7 PEDLHQAMKDFIETHPNWDQYRLFQAALAGF----LLQNGCQDRAVTRV 51 (57)
T ss_pred cHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----HHHcCchhHHHHHH
Confidence 68899999999875 7788888877777777 44456666666553
No 390
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=24.47 E-value=1.7e+02 Score=27.72 Aligned_cols=101 Identities=11% Similarity=0.063 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhCCCCeEEEEecCCCch---hhhhh-ccCC-CCCCceEEEecCCCCCCCCCCCCccHHHHHHHHHHHhhH
Q 011608 21 PVLELGKRFATQNDFQVTIFVVATDTS---TVQSQ-LRNL-PNPHLFNIVSLPPVDISALLDADASIVIKIIFMMRESLP 95 (481)
Q Consensus 21 P~l~La~~L~~r~Gh~Vt~~~~~~~~~---~~~~~-~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (481)
.-+.+++.|.++ |++|..+..+.... .+... ..+. ....++-..++|....... .. ..+......
T Consensus 12 r~~~~~~~l~~~-g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~------i~---~~~~~~~~~ 81 (287)
T TIGR02853 12 RQLELIRKLEEL-DAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGK------VA---TVFSNEKVV 81 (287)
T ss_pred HHHHHHHHHHHC-CCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCce------Ee---cccccCCcc
Confidence 457899999999 99999999873211 11111 1111 1112333444443221111 00 001111112
Q ss_pred HHHHHHhhcCCCCcEEEEcCCCchHH-HHHHHhCCceEE
Q 011608 96 ALRSSISTLKPRPTALFADLFGTEAF-QIADEFEMLKYV 133 (481)
Q Consensus 96 ~~~~~l~~~~~~~D~VI~D~~~~~~~-~~A~~~giP~v~ 133 (481)
.-++.++.+ ++.++++--....-+ ..|++.||+++-
T Consensus 82 l~~~~l~~~--~~~~~~~~G~~~~~l~~~a~~~gi~v~~ 118 (287)
T TIGR02853 82 LTPELLEST--KGHCTIYVGISNPYLEQLAADAGVKLIE 118 (287)
T ss_pred ccHHHHHhc--CCCCEEEEecCCHHHHHHHHHCCCeEEE
Confidence 224567776 556655444444454 489999999885
No 391
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=24.34 E-value=1.4e+02 Score=25.63 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=21.8
Q ss_pred CCceeeecCC------chhHHHHHcCcceeecccc
Q 011608 357 VGGFLSHCGW------NSTLESIVNGVPLIVWPLY 385 (481)
Q Consensus 357 ~~~~I~HgG~------~s~~eal~~GvP~v~~P~~ 385 (481)
.+++++|.|- +++.+|...++|+|++.-.
T Consensus 65 ~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~ 99 (172)
T PF02776_consen 65 PGVVIVTSGPGATNALTGLANAYADRIPVLVITGQ 99 (172)
T ss_dssp EEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEE
T ss_pred ceEEEeecccchHHHHHHHhhcccceeeEEEEecc
Confidence 3478888874 4778899999999998753
No 392
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=24.21 E-value=1.9e+02 Score=30.47 Aligned_cols=90 Identities=23% Similarity=0.264 Sum_probs=48.8
Q ss_pred chhhhhccccCCceeee---cCCchhHHHHHcCcceeeccccc-----chhhhHHHHHHhhceeEeccccCCCCccCHHH
Q 011608 347 PQVEILGHASVGGFLSH---CGWNSTLESIVNGVPLIVWPLYA-----EQKMNATMLAEELGVAVRPNEMPTENLVKREE 418 (481)
Q Consensus 347 pq~~lL~~~~~~~~I~H---gG~~s~~eal~~GvP~v~~P~~~-----DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~ 418 (481)
++.+++.-+.+++|-+= =| -|-+||++.|||.|.-=+.| .+... .. +..|+-+.-+ +.-+.++
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWG-YTPlE~~a~gVPsITTnLsGFG~~~~~~~~-~~--~~~GV~VvdR-----~~~n~~e 532 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWG-YTPLECTAFGVPSITTNLSGFGCWMQEHIE-DP--EEYGVYVVDR-----RDKNYDE 532 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS--HHHHHHHHTT--EEEETTBHHHHHHHTTS--HH--GGGTEEEE-S-----SSS-HHH
T ss_pred CHHHHhccCceeeecccccccc-CChHHHhhcCCceeeccchhHHHHHHHhhc-cC--cCCcEEEEeC-----CCCCHHH
Confidence 56666666664444441 12 38999999999999976642 22222 22 3557776544 5557777
Q ss_pred HHHHHHHHhcC------CchHHHHHHHHHHHHH
Q 011608 419 IEMMVRRILVD------KEGQALRSRVKELKHS 445 (481)
Q Consensus 419 l~~al~~vl~~------~~~~~~r~~a~~l~~~ 445 (481)
..+.|.+.|.+ ..-...|++++++++.
T Consensus 533 ~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~ 565 (633)
T PF05693_consen 533 SVNQLADFLYKFCQLSRRQRIIQRNRAERLSDL 565 (633)
T ss_dssp HHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 77777766632 1123456666666655
No 393
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=24.09 E-value=1.3e+02 Score=28.64 Aligned_cols=101 Identities=17% Similarity=0.323 Sum_probs=53.9
Q ss_pred chhHHHHHcCcceeecccccchhhhHHHHH----Hhhc----eeEeccccCCCCccCHHHHHHHHHHHhcCCch-HHHHH
Q 011608 367 NSTLESIVNGVPLIVWPLYAEQKMNATMLA----EELG----VAVRPNEMPTENLVKREEIEMMVRRILVDKEG-QALRS 437 (481)
Q Consensus 367 ~s~~eal~~GvP~v~~P~~~DQ~~na~~v~----~~~G----~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~-~~~r~ 437 (481)
+-+.-.+..=.|.+++|+..|+-.|....+ -.+| +|.+-+-+ +.....-+..+|+++.+++.| ..+++
T Consensus 16 ~y~~p~~~~llp~~~~pfls~~qk~y~~f~f~~iss~gwff~i~~re~ql---k~aa~~llq~kirk~~e~~eglr~i~e 92 (401)
T PF06785_consen 16 NYFFPVAAFLLPLVCYPFLSDSQKNYGYFVFSIISSLGWFFAIGRREKQL---KTAAGQLLQTKIRKITEKDEGLRKIRE 92 (401)
T ss_pred hhhhhHHHHHHHHhHhhhcCHHHHhcceeehHHHHHhHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 334444555679999999998776653320 1222 22221100 112234456778888877554 33444
Q ss_pred HHHHHHHH-----------------HHHHhhcCCChHHHHHHHHHHHHHH
Q 011608 438 RVKELKHS-----------------AKKASTKGGSSYNALSQVAKQCEMS 470 (481)
Q Consensus 438 ~a~~l~~~-----------------~~~~~~~~g~~~~~~~~~~~~~~~~ 470 (481)
..++-+.. .+..+.+.++..+-+++++..+++.
T Consensus 93 s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EE 142 (401)
T PF06785_consen 93 SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREE 142 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33332222 2334555677777777777776554
No 394
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=24.03 E-value=1.9e+02 Score=30.35 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCceeeecCCc------hhHHHHHcCcceeecc
Q 011608 357 VGGFLSHCGWN------STLESIVNGVPLIVWP 383 (481)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~v~~P 383 (481)
.+++++|.|-| ++.+|...++|+|++-
T Consensus 71 ~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 103 (561)
T PRK06048 71 VGVCVATSGPGATNLVTGIATAYMDSVPIVALT 103 (561)
T ss_pred CeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 44788888754 7889999999999984
No 395
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.96 E-value=1.9e+02 Score=30.48 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=22.4
Q ss_pred CCceeeecCCc------hhHHHHHcCcceeecc
Q 011608 357 VGGFLSHCGWN------STLESIVNGVPLIVWP 383 (481)
Q Consensus 357 ~~~~I~HgG~~------s~~eal~~GvP~v~~P 383 (481)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 78 ~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~ 110 (570)
T PRK06725 78 VGVVFATSGPGATNLVTGLADAYMDSIPLVVIT 110 (570)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCcCEEEEe
Confidence 55788888866 5789999999999984
No 396
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=23.88 E-value=7.2e+02 Score=25.87 Aligned_cols=36 Identities=17% Similarity=-0.118 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEe
Q 011608 95 PALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYI 135 (481)
Q Consensus 95 ~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~ 135 (481)
..+++++.+. +||++|.+. .+..+|+++|+|.+.+.
T Consensus 427 ~~l~~~l~~~--~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 427 WHLRSLVFTE--PVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHHHHhhc--CCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 3555677776 999999775 35678999999998754
No 397
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=23.66 E-value=8.8e+02 Score=26.56 Aligned_cols=39 Identities=8% Similarity=-0.005 Sum_probs=31.0
Q ss_pred cEEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEecCCC
Q 011608 6 THIALLAS--PGMGHFIPVLELGKRFATQNDFQVTIFVVATD 45 (481)
Q Consensus 6 ~~vvl~~~--p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (481)
.+++.++. |+.|-..-...||..|+.. |++|.++=....
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~-g~rvLlID~D~~ 586 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASG-GKRALLIDADGR 586 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhC-CCeEEEEeCCCC
Confidence 45555544 7889999999999999999 999888865543
No 398
>PF01152 Bac_globin: Bacterial-like globin; InterPro: IPR001486 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry represents a group of haemoglobin-like proteins found in eubacteria, cyanobacteria, protozoa, algae and plants, but not in animals or yeast. These proteins have a truncated 2-over-2 rather than the canonical 3-over-3 alpha-helical sandwich fold []. This entry includes: HbN (or GlbN): a truncated haemoglobin-like protein that binds oxygen cooperatively with a very high affinity and a slow dissociation rate, which may exclude it from oxygen transport. It appears to be involved in bacterial nitric oxide detoxification and in nitrosative stress []. Cyanoglobin (or GlbN): a truncated haemoprotein found in cyanobacteria that has high oxygen affinity, and which appears to serve as part of a terminal oxidase, rather than as a respiratory pigment []. HbO (or GlbO): a truncated haemoglobin-like protein with a lower oxygen affinity than HbN. HbO associates with the bacterial cell membrane, where it significantly increases oxygen uptake over membranes lacking this protein. HbO appears to interact with a terminal oxidase, and could participate in an oxygen/electron-transfer process that facilitates oxygen transfer during aerobic metabolism []. Glb3: a nuclear-encoded truncated haemoglobin from plants that appears more closely related to HbO than HbN. Glb3 from Arabidopsis thaliana (Mouse-ear cress) exhibits an unusual concentration-independent binding of oxygen and carbon dioxide []. ; GO: 0019825 oxygen binding, 0015671 oxygen transport; PDB: 2BKM_B 1UVY_A 1DLW_A 2XYK_B 2IG3_A 2GKM_B 1S61_A 1S56_B 1RTE_B 2GLN_A ....
Probab=23.63 E-value=2.1e+02 Score=22.61 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHh
Q 011608 443 KHSAKKASTKGGSSYNALSQVAKQCEMSLQGLMAK 477 (481)
Q Consensus 443 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 477 (481)
.+-++.++.+-+.....++++...++..+..|+||
T Consensus 86 ~~~~~~al~~~~v~~~~~~~~~~~~~~~~~~i~n~ 120 (120)
T PF01152_consen 86 LELLKQALDELGVPEELIDELLARLESLRDDIVNK 120 (120)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33355557777878888888888888888888887
No 399
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=23.59 E-value=3.7e+02 Score=21.14 Aligned_cols=95 Identities=8% Similarity=0.065 Sum_probs=52.4
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHH
Q 011608 9 ALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIF 88 (481)
Q Consensus 9 vl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 88 (481)
++++.... +-.-+..+++.|.+. |+++. +++...+.+... ++....+.... +. ....
T Consensus 3 vlisv~~~-dk~~~~~~a~~l~~~-G~~i~--aT~gTa~~L~~~--------gi~~~~v~~~~--~~-~~~~-------- 59 (116)
T cd01423 3 ILISIGSY-SKPELLPTAQKLSKL-GYKLY--ATEGTADFLLEN--------GIPVTPVAWPS--EE-PQND-------- 59 (116)
T ss_pred EEEecCcc-cchhHHHHHHHHHHC-CCEEE--EccHHHHHHHHc--------CCCceEeeecc--CC-CCCC--------
Confidence 34444443 556788999999999 88873 444333332221 33332221100 00 0000
Q ss_pred HHHHhhHHHHHHHhhcCCCCcEEEEcCC---------CchHHHHHHHhCCceEE
Q 011608 89 MMRESLPALRSSISTLKPRPTALFADLF---------GTEAFQIADEFEMLKYV 133 (481)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~~D~VI~D~~---------~~~~~~~A~~~giP~v~ 133 (481)
.+.+.+.+++- ++|+||.-+. .+.-...|-++|||+++
T Consensus 60 -----~~~i~~~i~~~--~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 -----KPSLRELLAEG--KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred -----chhHHHHHHcC--CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 14566666665 9999997432 22334678999999963
No 400
>COG1383 RPS17A Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]
Probab=23.45 E-value=2.7e+02 Score=20.16 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=5.7
Q ss_pred HHHHHHhhhc
Q 011608 471 LQGLMAKVMG 480 (481)
Q Consensus 471 ~~~~~~~~~~ 480 (481)
.-.|+|+|+|
T Consensus 43 SK~lRN~IAG 52 (74)
T COG1383 43 SKKLRNRIAG 52 (74)
T ss_pred hHHHHHHHHH
Confidence 3456666665
No 401
>PLN02939 transferase, transferring glycosyl groups
Probab=23.44 E-value=86 Score=34.96 Aligned_cols=40 Identities=25% Similarity=0.206 Sum_probs=30.0
Q ss_pred CCcEEEEEcC-----C-CccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 4 TKTHIALLAS-----P-GMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 4 ~~~~vvl~~~-----p-~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
..|||++++. . +.|=-...-.|.++|++. ||+|.+++|..
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~-GhdV~VIlP~Y 525 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKK-GHLVEIVLPKY 525 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 4599999864 2 223334556799999999 99999999974
No 402
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.26 E-value=2.2e+02 Score=24.06 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=47.1
Q ss_pred ecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 011608 381 VWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVD-KEGQALRSRVKELKHSAKKASTKGGSSYNA 459 (481)
Q Consensus 381 ~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~-~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~ 459 (481)
.+|..-.+-.+|+.++ +.--++. .-..+.|.+.+.+++.| +. -+-.+.+++..+.++ |......
T Consensus 77 pyPWt~~~L~aa~el~-ee~eeLs--------~deke~~~~sl~dL~~d~Pk---T~vA~~rfKk~~~K~---g~~v~~~ 141 (158)
T PF10083_consen 77 PYPWTENALEAANELI-EEDEELS--------PDEKEQFKESLPDLTKDTPK---TKVAATRFKKILSKA---GSIVGDA 141 (158)
T ss_pred CCchHHHHHHHHHHHH-HHhhcCC--------HHHHHHHHhhhHHHhhcCCc---cHHHHHHHHHHHHHH---hHHHHHH
Confidence 3677777888888775 3222211 12568899999999987 44 667777788877766 5555566
Q ss_pred HHHHHHHH
Q 011608 460 LSQVAKQC 467 (481)
Q Consensus 460 ~~~~~~~~ 467 (481)
+.+++-++
T Consensus 142 ~~dIlVdv 149 (158)
T PF10083_consen 142 IRDILVDV 149 (158)
T ss_pred HHHHHHHH
Confidence 66655443
No 403
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=23.14 E-value=1.1e+02 Score=26.69 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=31.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
||++.-.++.|=+. ...+.+.|.++ |++|.++.++...+.
T Consensus 3 ~Ill~vtGsiaa~~-~~~li~~L~~~-g~~V~vv~T~~A~~f 42 (182)
T PRK07313 3 NILLAVSGSIAAYK-AADLTSQLTKR-GYQVTVLMTKAATKF 42 (182)
T ss_pred EEEEEEeChHHHHH-HHHHHHHHHHC-CCEEEEEEChhHHHH
Confidence 56776666666554 89999999999 999999999854443
No 404
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=23.08 E-value=1.5e+02 Score=29.20 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=27.9
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 2 QTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 2 ~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
-..+|+|+++ ++.|. --..|++.|.++ ||+|+.+.-.
T Consensus 18 ~~~~~~IlVt--GgtGf--IG~~l~~~L~~~-G~~V~~v~r~ 54 (370)
T PLN02695 18 PSEKLRICIT--GAGGF--IASHIARRLKAE-GHYIIASDWK 54 (370)
T ss_pred CCCCCEEEEE--CCccH--HHHHHHHHHHhC-CCEEEEEEec
Confidence 3456888876 55565 457889999999 9999998743
No 405
>PRK07454 short chain dehydrogenase; Provisional
Probab=22.82 E-value=1.7e+02 Score=26.40 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
|...+++.++++ ++.| .--..++++|.++ |++|+++.-.
T Consensus 1 ~~~~~~k~vlIt-G~sg--~iG~~la~~l~~~-G~~V~~~~r~ 39 (241)
T PRK07454 1 MSLNSMPRALIT-GASS--GIGKATALAFAKA-GWDLALVARS 39 (241)
T ss_pred CCCCCCCEEEEe-CCCc--hHHHHHHHHHHHC-CCEEEEEeCC
Confidence 677778888887 4444 3457889999999 9999988754
No 406
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=22.69 E-value=1.2e+02 Score=27.26 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=26.5
Q ss_pred HHHhhcCCCCcEEEEcCCC--chHHHHHHHhCCceEEEechh
Q 011608 99 SSISTLKPRPTALFADLFG--TEAFQIADEFEMLKYVYIASN 138 (481)
Q Consensus 99 ~~l~~~~~~~D~VI~D~~~--~~~~~~A~~~giP~v~~~~~~ 138 (481)
+.+..+ +||+||..... .....-....++|++.+....
T Consensus 54 E~i~~l--~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILAL--KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHT----SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHhC--CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 445566 99999987766 445566778899999987654
No 407
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=22.63 E-value=5.1e+02 Score=22.41 Aligned_cols=101 Identities=19% Similarity=0.138 Sum_probs=48.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCch-hhhhh-ccCCCCCCceEEEecCCCCCCCCCCCCccHHH
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTS-TVQSQ-LRNLPNPHLFNIVSLPPVDISALLDADASIVI 84 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (481)
.|.+++-.+.|-....+.+|-+-.-+ |.+|.++=.-.... .=+.. +...+ ++.+......... ...+...
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~-G~rV~ivQFlKg~~~~GE~~~l~~l~---~~~~~~~g~~f~~----~~~~~~~ 76 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGH-GMRVLIVQFLKGGRYSGELKALKKLP---NVEIERFGKGFVW----RMNEEEE 76 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCT-T--EEEEESS--SS--HHHHHHGGGT-----EEEE--TT--------GGGHHH
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhC-CCEEEEEEEecCCCCcCHHHHHHhCC---eEEEEEcCCcccc----cCCCcHH
Confidence 46778888889888777777666666 78888886654411 11111 34443 5677766652211 1111111
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCc
Q 011608 85 KIIFMMRESLPALRSSISTLKPRPTALFADLFGT 118 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~ 118 (481)
. ....+...+...+.+.+- .+|+||-|-...
T Consensus 77 ~-~~~~~~~~~~a~~~i~~~--~~dlvILDEi~~ 107 (172)
T PF02572_consen 77 D-RAAAREGLEEAKEAISSG--EYDLVILDEINY 107 (172)
T ss_dssp H-HHHHHHHHHHHHHHTT-T--T-SEEEEETHHH
T ss_pred H-HHHHHHHHHHHHHHHhCC--CCCEEEEcchHH
Confidence 1 233333344444455444 999999996433
No 408
>PRK13054 lipid kinase; Reviewed
Probab=22.56 E-value=2.2e+02 Score=26.96 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=22.9
Q ss_pred CCceeeecCCchhHHHHHc------C--cceeeccc
Q 011608 357 VGGFLSHCGWNSTLESIVN------G--VPLIVWPL 384 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~------G--vP~v~~P~ 384 (481)
.+.+|..||-||+.|++.. + +|+-++|.
T Consensus 57 ~d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 57 VATVIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred CCEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 3489999999999998754 3 58888996
No 409
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.40 E-value=6.3e+02 Score=23.40 Aligned_cols=43 Identities=14% Similarity=-0.052 Sum_probs=32.0
Q ss_pred hHHHHHHHhhcCCCCcEEEEcCCCchH-H-HHHHHhCCceEEEechh
Q 011608 94 LPALRSSISTLKPRPTALFADLFGTEA-F-QIADEFEMLKYVYIASN 138 (481)
Q Consensus 94 ~~~~~~~l~~~~~~~D~VI~D~~~~~~-~-~~A~~~giP~v~~~~~~ 138 (481)
...+.+.+++- +..+|+++...... + .+|+..|+|++.+.+..
T Consensus 206 l~~l~~~ik~~--~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 206 LKRLIDLAKEK--GVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHHHc--CCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 34455566666 99999999876653 3 68999999998876554
No 410
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.31 E-value=1.1e+02 Score=30.92 Aligned_cols=36 Identities=8% Similarity=0.030 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEe
Q 011608 95 PALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYI 135 (481)
Q Consensus 95 ~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~ 135 (481)
..+.+.+++. +||++|.... ...+|+++|||...+.
T Consensus 359 ~e~~~~i~~~--~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFVKRL--KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHh--CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 3556677777 9999998864 5568999999997643
No 411
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=22.26 E-value=5.9e+02 Score=23.07 Aligned_cols=87 Identities=11% Similarity=-0.024 Sum_probs=47.4
Q ss_pred hccccCCceeeecCCchhHHHHHc-----CcceeecccccchhhhHH-----HHHHhhceeEeccccCCCCccCHHHHHH
Q 011608 352 LGHASVGGFLSHCGWNSTLESIVN-----GVPLIVWPLYAEQKMNAT-----MLAEELGVAVRPNEMPTENLVKREEIEM 421 (481)
Q Consensus 352 L~~~~~~~~I~HgG~~s~~eal~~-----GvP~v~~P~~~DQ~~na~-----~v~~~~G~g~~~~~~~~~~~~~~~~l~~ 421 (481)
|..+. ++|.--+-..+.+.++. |+++.+ .|++..+. .+ ++-++-+.+..- .....-...|++
T Consensus 83 l~g~~--LViaATdD~~vN~~I~~~a~~~~~lvn~----vd~p~~~dFi~PAiv-~rg~l~IaIST~-G~sP~lar~lR~ 154 (223)
T PRK05562 83 IKDKH--LIVIATDDEKLNNKIRKHCDRLYKLYID----CSDYKKGLCIIPYQR-STKNFVFALNTK-GGSPKTSVFIGE 154 (223)
T ss_pred hCCCc--EEEECCCCHHHHHHHHHHHHHcCCeEEE----cCCcccCeEEeeeEE-ecCCEEEEEECC-CcCcHHHHHHHH
Confidence 44544 78888887777776654 444443 24433332 22 121222222210 002233577899
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHH
Q 011608 422 MVRRILVDKEGQALRSRVKELKHSAKK 448 (481)
Q Consensus 422 al~~vl~~~~~~~~r~~a~~l~~~~~~ 448 (481)
.|++++. +...+-+.+.+++..++.
T Consensus 155 ~ie~~l~--~~~~l~~~l~~~R~~vk~ 179 (223)
T PRK05562 155 KVKNFLK--KYDDFIEYVTKIRNKAKK 179 (223)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 9999983 233477777888877554
No 412
>cd08806 CARD_CARD14_CARMA2 Caspase activation and recruitment domain of CARD14-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD14, also known as BIMP2 or CARMA2 (caspase recruitment domain-containing membrane-associated guanylate kinase protein 2). CARD14 has been identified as a novel member of the MAGUK (membrane-associated guanylate kinase) family that functions as upstream activators of BCL10 (B-cell lymphoma 10) and NF-kB signaling. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways
Probab=22.26 E-value=3.2e+02 Score=20.49 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=32.2
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhh
Q 011608 423 VRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEMSLQGLMAKV 478 (481)
Q Consensus 423 l~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 478 (481)
.++|+++.. +..++.+.+...-- +...| .+++..|++.++..+..+..||
T Consensus 36 eeeIls~~t---~~~r~~k~g~LLDI-L~trG--~~g~~aFLeSLe~~yP~ly~~i 85 (86)
T cd08806 36 EEEVLHSPR---LTNRAMRVGHLLDL-LKTRG--KNGAIAFLESLKFHNPDVYTLV 85 (86)
T ss_pred HHHHHccch---HHHHHHHHHHHHHH-HHhcC--chHHHHHHHHHHHHCHHHHHhc
Confidence 346777777 77777773333222 33233 3678888999888777777765
No 413
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=22.09 E-value=1.6e+02 Score=23.71 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=28.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
++++..+..++-.-+..+++.|.++ |+.|..+..+
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~-G~~v~~~~~~ 35 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQ-GYAVVAFDYP 35 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHT-TEEEEEESCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHC-CCEEEEEecC
Confidence 3566678888888899999999999 9998888544
No 414
>PRK07206 hypothetical protein; Provisional
Probab=21.93 E-value=2.8e+02 Score=27.68 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=49.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHH
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKI 86 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (481)
+|+++-.. .....++++++++ |+++..++........... .+.. ... ...+
T Consensus 4 ~~liv~~~-----~~~~~~~~a~~~~-G~~~v~v~~~~~~~~~~~~--------~~~~--------~~~-------~~~i 54 (416)
T PRK07206 4 KVVIVDPF-----SSGKFLAPAFKKR-GIEPIAVTSSCLLDPYYYA--------SFDT--------SDF-------IEVI 54 (416)
T ss_pred eEEEEcCC-----chHHHHHHHHHHc-CCeEEEEEcCCCCchhhhc--------ccCc--------ccc-------hhhh
Confidence 46666632 2245689999999 9999988877432210000 0000 000 0000
Q ss_pred HHHHHHhhHHHHHHHhhcCCCCcEEE--EcCCCchHHHHHHHhCCce
Q 011608 87 IFMMRESLPALRSSISTLKPRPTALF--ADLFGTEAFQIADEFEMLK 131 (481)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~D~VI--~D~~~~~~~~~A~~~giP~ 131 (481)
. ....+.+.+.+++. ++|.|+ +|.....+..+++.+++|+
T Consensus 55 ~---~~~~~~l~~~~~~~--~~d~vi~~~e~~~~~~a~l~~~l~l~~ 96 (416)
T PRK07206 55 I---NGDIDDLVEFLRKL--GPEAIIAGAESGVELADRLAEILTPQY 96 (416)
T ss_pred c---CCCHHHHHHHHHHc--CCCEEEECCCccHHHHHHHHHhcCCCc
Confidence 0 01123445556666 899999 4444444556788888883
No 415
>PRK13236 nitrogenase reductase; Reviewed
Probab=21.90 E-value=1.7e+02 Score=27.79 Aligned_cols=43 Identities=12% Similarity=0.069 Sum_probs=34.3
Q ss_pred CCCCCcEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 1 MQTTKTHIALLAS-PGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 1 m~~~~~~vvl~~~-p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
|....||++-+.- ++-|-..-.+.||..|+++ |++|.++=-.+
T Consensus 1 ~~~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~-G~rVLliD~D~ 44 (296)
T PRK13236 1 MTDENIRQIAFYGKGGIGKSTTSQNTLAAMAEM-GQRILIVGCDP 44 (296)
T ss_pred CCCcCceEEEEECCCcCCHHHHHHHHHHHHHHC-CCcEEEEEccC
Confidence 5556677776633 6779999999999999999 99999995553
No 416
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=21.85 E-value=1.6e+02 Score=27.24 Aligned_cols=92 Identities=8% Similarity=0.039 Sum_probs=55.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIK 85 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 85 (481)
++|+++.--+.| ..||+.|.++ |+.|++-+...+... .. .+.... .+- -
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~-g~~v~~Svat~~g~~-----~~----~~~~v~-------~G~--l------- 51 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAA-GVDIVLSLAGRTGGP-----AD----LPGPVR-------VGG--F------- 51 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhC-CCeEEEEEccCCCCc-----cc----CCceEE-------ECC--C-------
Confidence 457776544444 5789999999 998888776643320 00 011100 000 0
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCcEEE--EcCCCch----HHHHHHHhCCceEEEec
Q 011608 86 IIFMMRESLPALRSSISTLKPRPTALF--ADLFGTE----AFQIADEFEMLKYVYIA 136 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~D~VI--~D~~~~~----~~~~A~~~giP~v~~~~ 136 (481)
...+.+.+++++. ++++|| +.+|..- +..+|+++|||++.|.-
T Consensus 52 ------~~~~~l~~~l~~~--~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 52 ------GGAEGLAAYLREE--GIDLVIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred ------CCHHHHHHHHHHC--CCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 0234566667776 999988 4444432 34689999999999763
No 417
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=21.79 E-value=8.8e+02 Score=24.88 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=24.6
Q ss_pred CCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 14 PGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 14 p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
...|-..-...|++.|+++ |++|..+=+-
T Consensus 8 t~vGKT~v~~~L~~~l~~~-G~~v~~fKp~ 36 (475)
T TIGR00313 8 SSAGKSTLTAGLCRILARR-GYRVAPFKSQ 36 (475)
T ss_pred CCCCHHHHHHHHHHHHHhC-CCeEEEECCc
Confidence 3468888899999999999 9999988664
No 418
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=21.76 E-value=2.1e+02 Score=24.55 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCCCChHHHHHHHHHHHhC
Q 011608 264 ESVIYVSFGGGGTLSANQMIEVAWGLELS 292 (481)
Q Consensus 264 ~~vv~vs~GS~~~~~~~~~~~~~~al~~~ 292 (481)
...+|+++||......+.+....+.+...
T Consensus 7 ~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 7 SALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 34799999997654555667777777663
No 419
>PRK01151 rps17E 30S ribosomal protein S17e; Validated
Probab=21.73 E-value=2.6e+02 Score=19.28 Aligned_cols=10 Identities=10% Similarity=0.328 Sum_probs=7.7
Q ss_pred HHHHHHhhhc
Q 011608 471 LQGLMAKVMG 480 (481)
Q Consensus 471 ~~~~~~~~~~ 480 (481)
.-.++|||+|
T Consensus 42 SK~lRNrIAG 51 (58)
T PRK01151 42 SKKVRNRIAG 51 (58)
T ss_pred cHhHHHHHhh
Confidence 4578888887
No 420
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=21.69 E-value=90 Score=27.24 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=28.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
|++--.++.|-+.- ..|.++|.++ |++|.++.++.....
T Consensus 2 illgvtGsiaa~ka-~~lir~L~~~-g~~V~vv~T~~A~~f 40 (181)
T TIGR00421 2 IVVAMTGASGVIYG-IRLLEVLKEA-GVEVHLVISDWAKET 40 (181)
T ss_pred EEEEEECHHHHHHH-HHHHHHHHHC-CCEEEEEECccHHHH
Confidence 44444455555544 8899999999 999999999955443
No 421
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=21.66 E-value=4.8e+02 Score=21.81 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=7.3
Q ss_pred HHHHhhceeEec
Q 011608 394 MLAEELGVAVRP 405 (481)
Q Consensus 394 ~v~~~~G~g~~~ 405 (481)
.+++++|+.+.-
T Consensus 11 ~IA~khgI~L~~ 22 (144)
T PF11657_consen 11 EIARKHGIALSR 22 (144)
T ss_pred HHHHHcCCccCC
Confidence 344677777654
No 422
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=21.63 E-value=17 Score=34.15 Aligned_cols=44 Identities=23% Similarity=0.214 Sum_probs=30.4
Q ss_pred ceeeecCCchhHHHH--HcCcceeecccccchhhhHHHHHHhhcee
Q 011608 359 GFLSHCGWNSTLESI--VNGVPLIVWPLYAEQKMNATMLAEELGVA 402 (481)
Q Consensus 359 ~~I~HgG~~s~~eal--~~GvP~v~~P~~~DQ~~na~~v~~~~G~g 402 (481)
+.-==||||+++.-+ .+|+-+.++-+..+|...++.-+++.|+.
T Consensus 66 vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~ 111 (273)
T PF02353_consen 66 VLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE 111 (273)
T ss_dssp EEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS
T ss_pred EEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC
Confidence 445568899877654 35999999999999999997665677865
No 423
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=21.62 E-value=4.2e+02 Score=21.08 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=15.9
Q ss_pred HHhhHHHHHHHhhcCCCCcEEEEc
Q 011608 91 RESLPALRSSISTLKPRPTALFAD 114 (481)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~D~VI~D 114 (481)
....+.+.+++++. +||+|++=
T Consensus 86 ~~~~~~l~~~i~~~--~p~~V~t~ 107 (128)
T PF02585_consen 86 EELVRDLEDLIREF--RPDVVFTP 107 (128)
T ss_dssp HHHHHHHHHHHHHH---ESEEEEE
T ss_pred HHHHHHHHHHHHHc--CCCEEEEC
Confidence 44566788889998 99998853
No 424
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=21.60 E-value=1e+03 Score=25.70 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=59.1
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHH
Q 011608 7 HIALLAS-PGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIK 85 (481)
Q Consensus 7 ~vvl~~~-p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 85 (481)
.|++.+. +..|-..-.+.|++.|.++ |++|.++=|-.. + ++. .. .....
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~-G~~Vg~fKPi~~---------------~----p~~----~~------~~~~~ 53 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERK-GVKVGFFKPIAQ---------------P----PLT----MS------EVEAL 53 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEeCCccc---------------C----CCC----HH------HHHHH
Confidence 4666655 4479999999999999999 999999764311 1 000 00 00000
Q ss_pred HHH-HHHHhhHHHHHHHhhcCCCCcEEEEcCCCc---------hHHHHHHHhCCceEEEech
Q 011608 86 IIF-MMRESLPALRSSISTLKPRPTALFADLFGT---------EAFQIADEFEMLKYVYIAS 137 (481)
Q Consensus 86 ~~~-~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~---------~~~~~A~~~giP~v~~~~~ 137 (481)
+.. -.....+.+.+.++++..+.|+||+|-..+ ....+|+.++.|++.+...
T Consensus 54 ~~~~~~~~~~~~I~~~~~~l~~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~ 115 (684)
T PRK05632 54 LASGQLDELLEEIVARYHALAKDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSG 115 (684)
T ss_pred HhccCChHHHHHHHHHHHHhccCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECC
Confidence 000 001111223333334445889999764332 2457899999999998764
No 425
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=21.45 E-value=2.2e+02 Score=24.46 Aligned_cols=92 Identities=11% Similarity=0.061 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHHHHHHHHhhHHHH
Q 011608 19 FIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKIIFMMRESLPALR 98 (481)
Q Consensus 19 i~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (481)
.--..+-..++++. |..|++++.. .++++.+..+.. ++.|+.-.. ..+ ...+.
T Consensus 48 tpe~~~W~~e~k~~-gi~v~vvSNn-~e~RV~~~~~~l----~v~fi~~A~----------KP~-----------~~~fr 100 (175)
T COG2179 48 TPELRAWLAELKEA-GIKVVVVSNN-KESRVARAAEKL----GVPFIYRAK----------KPF-----------GRAFR 100 (175)
T ss_pred CHHHHHHHHHHHhc-CCEEEEEeCC-CHHHHHhhhhhc----CCceeeccc----------Ccc-----------HHHHH
Confidence 33456778889999 9999999884 444443322211 333332111 111 22334
Q ss_pred HHHhhc--CCCCcEEEEcCCCchHHHHHHHhCCceEEEechh
Q 011608 99 SSISTL--KPRPTALFADLFGTEAFQIADEFEMLKYVYIASN 138 (481)
Q Consensus 99 ~~l~~~--~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~ 138 (481)
..++++ +.+-.++|.|.++.. +..+++.|+-+|.+.+..
T Consensus 101 ~Al~~m~l~~~~vvmVGDqL~TD-Vlggnr~G~~tIlV~Pl~ 141 (175)
T COG2179 101 RALKEMNLPPEEVVMVGDQLFTD-VLGGNRAGMRTILVEPLV 141 (175)
T ss_pred HHHHHcCCChhHEEEEcchhhhh-hhcccccCcEEEEEEEec
Confidence 445554 223346778886664 446899999999877643
No 426
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=21.44 E-value=14 Score=20.18 Aligned_cols=17 Identities=24% Similarity=0.665 Sum_probs=12.6
Q ss_pred CCchhHHHHHcCcceee
Q 011608 365 GWNSTLESIVNGVPLIV 381 (481)
Q Consensus 365 G~~s~~eal~~GvP~v~ 381 (481)
|.|++.-.++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 66788888888888664
No 427
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.35 E-value=4.7e+02 Score=26.05 Aligned_cols=45 Identities=11% Similarity=0.293 Sum_probs=35.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHh----CCCCeEEEEecCCCchhhhh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFAT----QNDFQVTIFVVATDTSTVQS 51 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~----r~Gh~Vt~~~~~~~~~~~~~ 51 (481)
-.|+++-..+.|-..-...||..+.. + |+.|.+++...++.....
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~-g~~V~lit~Dt~R~aa~e 223 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDK-SLNIKIITIDNYRIGAKK 223 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccC-CCeEEEEeccCccHHHHH
Confidence 35666766788999999999998873 5 899999999977654333
No 428
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=21.33 E-value=71 Score=26.97 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=23.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
|.++-.+..| .++|..|+++ ||+|++.+...
T Consensus 2 I~ViGaG~~G-----~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWG-----TALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHH-----HHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHH-----HHHHHHHHHc-CCEEEEEeccH
Confidence 4455555444 4789999999 99999999984
No 429
>PRK09620 hypothetical protein; Provisional
Probab=21.28 E-value=1.5e+02 Score=26.97 Aligned_cols=21 Identities=5% Similarity=-0.053 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCCeEEEEecC
Q 011608 22 VLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 22 ~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
-..||++|.++ |++|+++..+
T Consensus 32 Gs~LA~~L~~~-Ga~V~li~g~ 52 (229)
T PRK09620 32 GRIIAEELISK-GAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHHC-CCeEEEEeCC
Confidence 47899999999 9999999865
No 430
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=21.19 E-value=1.1e+02 Score=26.86 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=32.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEecCCCchh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFAT-QNDFQVTIFVVATDTST 48 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~-r~Gh~Vt~~~~~~~~~~ 48 (481)
.||++.-.++.| .+=...|.++|.+ . ||+|.++.++.....
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~-g~~V~vv~T~~A~~f 43 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVG-EIETHLVISQAARQT 43 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhc-CCeEEEEECHHHHHH
Confidence 357666667666 6669999999998 6 899999999955444
No 431
>PRK13337 putative lipid kinase; Reviewed
Probab=21.17 E-value=3.4e+02 Score=25.77 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=22.5
Q ss_pred CCceeeecCCchhHHHHHc------Ccceeeccc
Q 011608 357 VGGFLSHCGWNSTLESIVN------GVPLIVWPL 384 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~------GvP~v~~P~ 384 (481)
.+++|.-||-||+.|++.. ..|+-++|.
T Consensus 58 ~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 58 FDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred CCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 3489999999999999862 347788886
No 432
>PRK14098 glycogen synthase; Provisional
Probab=21.15 E-value=1.6e+02 Score=30.43 Aligned_cols=42 Identities=7% Similarity=0.091 Sum_probs=30.3
Q ss_pred CCCCCcEEEEEcCC------CccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 1 MQTTKTHIALLASP------GMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 1 m~~~~~~vvl~~~p------~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
|....|+|++++.= +.|=-...-.|.++|+++ ||+|.++.|.
T Consensus 1 ~~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~-g~~v~v~~P~ 48 (489)
T PRK14098 1 MSRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEE-GFEARIMMPK 48 (489)
T ss_pred CCCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 33445899988731 223334556789999999 9999999986
No 433
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=21.13 E-value=3.3e+02 Score=25.64 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=60.7
Q ss_pred hhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHH
Q 011608 253 SLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFL 332 (481)
Q Consensus 253 ~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ 332 (481)
...++|.+. +.++++++|+. ......+...|.+.+.++...-. .+.
T Consensus 122 ~av~~L~~A--~rI~~~G~g~S----~~vA~~~~~~l~~ig~~~~~~~d---------------------------~~~- 167 (281)
T COG1737 122 RAVELLAKA--RRIYFFGLGSS----GLVASDLAYKLMRIGLNVVALSD---------------------------THG- 167 (281)
T ss_pred HHHHHHHcC--CeEEEEEechh----HHHHHHHHHHHHHcCCceeEecc---------------------------hHH-
Confidence 445566654 33777777764 33456677788888888776531 110
Q ss_pred hhhcCCCccccccCchhhhhccccCCceeeecCCc-----hhHHHHHcCcceeecccccchhh
Q 011608 333 TRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWN-----STLESIVNGVPLIVWPLYAEQKM 390 (481)
Q Consensus 333 ~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~-----s~~eal~~GvP~v~~P~~~DQ~~ 390 (481)
.+ -+...+...++-.+|+|.|.. ....|-..|+|.|.+--..+-+.
T Consensus 168 -----------~~-~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spl 218 (281)
T COG1737 168 -----------QL-MQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPL 218 (281)
T ss_pred -----------HH-HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCch
Confidence 12 255667777788999999976 45566789999999887765554
No 434
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.07 E-value=1.8e+02 Score=21.60 Aligned_cols=36 Identities=6% Similarity=-0.111 Sum_probs=28.1
Q ss_pred cEEEEEcCCCc--cCHHHHHHHHHHHHhCCCCeEEEEec
Q 011608 6 THIALLASPGM--GHFIPVLELGKRFATQNDFQVTIFVV 42 (481)
Q Consensus 6 ~~vvl~~~p~~--GHi~P~l~La~~L~~r~Gh~Vt~~~~ 42 (481)
-+|+++|.... .+..-...++..|.+. |.+|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~-g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAA-GVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHC-CCEEEEECC
Confidence 46888987653 4667788999999999 999987543
No 435
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.02 E-value=3.8e+02 Score=20.30 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=30.8
Q ss_pred CHHHHHHH---HHHHhcCCchHHHHHHHHHHHHHHHHHhhc-CCChHHHHHHHHHHHHH
Q 011608 415 KREEIEMM---VRRILVDKEGQALRSRVKELKHSAKKASTK-GGSSYNALSQVAKQCEM 469 (481)
Q Consensus 415 ~~~~l~~a---l~~vl~~~~~~~~r~~a~~l~~~~~~~~~~-~g~~~~~~~~~~~~~~~ 469 (481)
+++.|.++ +.+++.|.. .-+|.++.++.+..++.. +.+....++.-+--|++
T Consensus 11 ~~e~i~q~~~lL~~Ii~Dtt---VPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLee 66 (93)
T COG1698 11 SEEKINQVMQLLDEIIQDTT---VPRNIRRAAEEAKEALNNEGESPAVRAATAISILEE 66 (93)
T ss_pred hHHHHHHHHHHHHHHHcccc---ccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Confidence 55555554 556667776 667777777776666655 55555555444444433
No 436
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=20.99 E-value=2.1e+02 Score=29.66 Aligned_cols=45 Identities=9% Similarity=0.175 Sum_probs=36.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-+++.-.|+.|-..=..+++...... |.+|.|++.+...+.+.+.
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~~~yis~e~~~~~i~~~ 319 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRR-GERCLLFAFEESRAQLIRN 319 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCHHHHHHH
Confidence 45666778889999999999998888 9999999999766655443
No 437
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=20.94 E-value=7.1e+02 Score=23.46 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhh
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTV 49 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~ 49 (481)
.++|+++-.+..|.. +|+.|+++ ||.|.+..-..+....
T Consensus 3 ~~~v~IvG~GliG~s-----~a~~l~~~-g~~v~i~g~d~~~~~~ 41 (279)
T COG0287 3 SMKVGIVGLGLMGGS-----LARALKEA-GLVVRIIGRDRSAATL 41 (279)
T ss_pred CcEEEEECCchHHHH-----HHHHHHHc-CCeEEEEeecCcHHHH
Confidence 468888888877764 78999999 9999999888665443
No 438
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=20.90 E-value=2.1e+02 Score=22.71 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=33.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
||++..-++.|-......+++.|+++ |.+|.++-..+
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~-g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEK-GKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCc
Confidence 47888889999999999999999999 99999888776
No 439
>PRK00784 cobyric acid synthase; Provisional
Probab=20.89 E-value=7e+02 Score=25.66 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=28.5
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEec
Q 011608 7 HIALLAS-PGMGHFIPVLELGKRFATQNDFQVTIFVV 42 (481)
Q Consensus 7 ~vvl~~~-p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~ 42 (481)
.+++... ...|-..-...|++.|+++ |++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~-G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARR-GYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEecccc
Confidence 3666655 4479999999999999999 999987754
No 440
>PRK05920 aromatic acid decarboxylase; Validated
Probab=20.82 E-value=1.3e+02 Score=26.92 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=31.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTV 49 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~ 49 (481)
.||++--.++ ...+=...+.++|.+. ||+|+++.++.....+
T Consensus 4 krIllgITGs-iaa~ka~~lvr~L~~~-g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 4 KRIVLAITGA-SGAIYGVRLLECLLAA-DYEVHLVISKAAQKVL 45 (204)
T ss_pred CEEEEEEeCH-HHHHHHHHHHHHHHHC-CCEEEEEEChhHHHHH
Confidence 5666665454 4457889999999999 9999999999654443
No 441
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=20.48 E-value=1.2e+02 Score=21.36 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCCeEEEEecC
Q 011608 22 VLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 22 ~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
-+..|..|+++ |++|+++=..
T Consensus 8 Gl~aA~~L~~~-g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKA-GYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHT-TSEEEEEESS
T ss_pred HHHHHHHHHHC-CCcEEEEecC
Confidence 46789999999 9999998655
No 442
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.45 E-value=1.5e+02 Score=23.07 Aligned_cols=54 Identities=15% Similarity=0.019 Sum_probs=38.8
Q ss_pred CchhhhhhhccCCCC-cEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCC
Q 011608 250 ENSSLLEWLDMQPTE-SVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPP 303 (481)
Q Consensus 250 ~~~~~~~~l~~~~~~-~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 303 (481)
.|.++..++...... -+=-=+||.+..-..+.++++++.+++++..-|.+-..+
T Consensus 11 ~Ps~l~~~~~~~~~~v~iKETCFG~~i~Ge~e~V~~~i~~iR~ld~~~IF~KdRG 65 (104)
T PF09875_consen 11 SPSDLAMKLYELSLPVTIKETCFGAMIEGEEEEVDKVIEEIRKLDPNHIFVKDRG 65 (104)
T ss_pred CHHHHHHHHHhcCCCceeeecceeeEEECCHHHHHHHHHHHHhhCCCceEeecCC
Confidence 677888877654321 122347999988889999999999999887666665433
No 443
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=20.43 E-value=4.2e+02 Score=25.01 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=38.8
Q ss_pred eeeecCCchhHHHHHcCcceeecccc--cchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHH
Q 011608 360 FLSHCGWNSTLESIVNGVPLIVWPLY--AEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRI 426 (481)
Q Consensus 360 ~I~HgG~~s~~eal~~GvP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~v 426 (481)
.=...|.+....|+..|+...++-.+ .+..+.+.-+. +.- +.+. ..-|.++|.+.+.++
T Consensus 193 LP~f~G~~p~~~ai~~G~k~tG~TvH~V~e~lD~GpII~-Q~~--v~I~-----~~dt~~~L~~ri~~~ 253 (280)
T TIGR00655 193 LPAFIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIE-QDV--VRVD-----HTDNVEDLIRAGRDI 253 (280)
T ss_pred CCCCCCcCHHHHHHHcCCCeEEEEEEEEcCCCcCCCeEE-EEE--EEcC-----CCCCHHHHHHHHHHH
Confidence 33346888899999999999888875 34445554442 333 3332 445888888888654
No 444
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=20.00 E-value=91 Score=29.62 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 20 IPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 20 ~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
.-.+.||++|... |.+|++++.+...+.+.+.
T Consensus 63 ~GA~aLa~aL~~l-G~~~~ivtd~~~~~~~~~~ 94 (291)
T PF14336_consen 63 PGAAALARALQAL-GKEVVIVTDERCAPVVKAA 94 (291)
T ss_pred HHHHHHHHHHHHc-CCeEEEEECHHHHHHHHHH
Confidence 3468899999999 9999999999776665554
Done!