Query 011608
Match_columns 481
No_of_seqs 132 out of 1336
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 11:40:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 1E-70 3.4E-75 549.8 38.4 434 4-468 12-453 (454)
2 2vch_A Hydroquinone glucosyltr 100.0 1.6E-66 5.5E-71 528.3 46.8 461 1-469 1-469 (480)
3 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 1.2E-62 4.2E-67 501.4 35.9 439 5-468 8-478 (482)
4 2acv_A Triterpene UDP-glucosyl 100.0 6.7E-62 2.3E-66 492.5 40.6 433 5-468 9-462 (463)
5 2c1x_A UDP-glucose flavonoid 3 100.0 4.7E-62 1.6E-66 492.3 37.1 435 4-468 6-451 (456)
6 4amg_A Snogd; transferase, pol 100.0 7.6E-45 2.6E-49 362.8 23.5 345 4-448 21-384 (400)
7 2iya_A OLEI, oleandomycin glyc 100.0 2.9E-43 9.9E-48 354.2 31.3 388 5-462 12-415 (424)
8 1iir_A Glycosyltransferase GTF 100.0 1.4E-41 4.9E-46 340.7 31.7 361 6-446 1-382 (415)
9 1rrv_A Glycosyltransferase GTF 100.0 1.1E-40 3.7E-45 334.5 31.0 381 6-467 1-399 (416)
10 3h4t_A Glycosyltransferase GTF 100.0 1.1E-39 3.7E-44 325.6 27.2 358 6-467 1-380 (404)
11 3rsc_A CALG2; TDP, enediyne, s 100.0 3.9E-38 1.3E-42 315.8 31.9 375 4-465 19-410 (415)
12 2yjn_A ERYCIII, glycosyltransf 100.0 1.5E-37 5.3E-42 313.9 30.6 370 4-467 19-433 (441)
13 3ia7_A CALG4; glycosysltransfe 100.0 4.8E-37 1.6E-41 306.4 30.9 371 6-466 5-396 (402)
14 2p6p_A Glycosyl transferase; X 100.0 1.9E-36 6.5E-41 300.4 33.2 351 6-465 1-376 (384)
15 2iyf_A OLED, oleandomycin glyc 100.0 5.5E-36 1.9E-40 301.6 30.2 366 1-448 1-383 (430)
16 4fzr_A SSFS6; structural genom 100.0 1.4E-34 4.8E-39 288.3 27.5 353 3-460 13-392 (398)
17 3oti_A CALG3; calicheamicin, T 100.0 4.5E-34 1.6E-38 284.7 27.6 347 4-461 19-390 (398)
18 3tsa_A SPNG, NDP-rhamnosyltran 100.0 1.8E-32 6E-37 272.5 24.7 352 5-463 1-383 (391)
19 3otg_A CALG1; calicheamicin, T 100.0 5.1E-31 1.8E-35 263.7 27.4 357 3-462 18-402 (412)
20 3s2u_A UDP-N-acetylglucosamine 100.0 3.8E-28 1.3E-32 238.3 25.8 309 7-431 4-326 (365)
21 2o6l_A UDP-glucuronosyltransfe 100.0 8.7E-28 3E-32 209.8 15.1 162 250-447 7-169 (170)
22 1f0k_A MURG, UDP-N-acetylgluco 99.8 3.1E-18 1E-22 167.9 27.4 322 1-443 2-334 (364)
23 2jzc_A UDP-N-acetylglucosamine 99.6 2.6E-15 9E-20 134.1 8.3 132 262-426 26-196 (224)
24 3hbm_A UDP-sugar hydrolase; PS 99.5 9.6E-13 3.3E-17 122.6 19.2 117 264-408 157-275 (282)
25 1v4v_A UDP-N-acetylglucosamine 99.3 3.2E-11 1.1E-15 118.3 16.9 321 1-431 1-336 (376)
26 1vgv_A UDP-N-acetylglucosamine 99.2 1.5E-10 5.1E-15 113.8 15.8 320 6-431 1-344 (384)
27 3c48_A Predicted glycosyltrans 99.2 1.2E-08 4.3E-13 101.8 28.3 340 4-431 19-393 (438)
28 3ot5_A UDP-N-acetylglucosamine 99.2 9.5E-10 3.2E-14 108.7 18.2 317 6-431 28-363 (403)
29 3dzc_A UDP-N-acetylglucosamine 99.1 2.2E-09 7.5E-14 105.9 17.6 322 6-431 26-369 (396)
30 3okp_A GDP-mannose-dependent a 99.1 6.9E-08 2.3E-12 94.8 27.6 314 4-431 3-346 (394)
31 2gek_A Phosphatidylinositol ma 99.0 5.3E-08 1.8E-12 96.0 23.7 309 4-431 19-351 (406)
32 3fro_A GLGA glycogen synthase; 99.0 5.1E-07 1.8E-11 89.8 29.6 92 338-443 311-411 (439)
33 2jjm_A Glycosyl transferase, g 98.9 1.1E-06 3.8E-11 86.3 29.6 318 6-431 16-352 (394)
34 2r60_A Glycosyl transferase, g 98.9 3.8E-07 1.3E-11 92.8 26.9 81 338-431 335-426 (499)
35 2iw1_A Lipopolysaccharide core 98.9 1.3E-06 4.3E-11 85.0 29.6 143 265-444 196-353 (374)
36 3beo_A UDP-N-acetylglucosamine 98.9 3.9E-08 1.3E-12 96.0 17.9 321 5-431 8-344 (375)
37 4hwg_A UDP-N-acetylglucosamine 98.9 1.2E-07 4.3E-12 92.7 19.7 314 6-431 10-344 (385)
38 2iuy_A Avigt4, glycosyltransfe 98.8 2E-07 6.8E-12 89.8 18.5 122 267-428 164-307 (342)
39 2x6q_A Trehalose-synthase TRET 98.6 1.5E-05 5E-10 78.8 25.5 79 338-431 293-381 (416)
40 3s28_A Sucrose synthase 1; gly 98.3 0.00011 3.6E-09 78.3 24.7 92 338-442 640-748 (816)
41 1rzu_A Glycogen synthase 1; gl 98.2 9E-05 3.1E-09 74.8 20.2 81 338-431 346-445 (485)
42 2f9f_A First mannosyl transfer 98.2 1.7E-05 5.7E-10 68.4 12.0 139 266-442 24-173 (177)
43 2xci_A KDO-transferase, 3-deox 98.1 0.0014 4.8E-08 63.6 24.9 94 340-445 262-362 (374)
44 2qzs_A Glycogen synthase; glyc 97.9 0.0027 9.2E-08 63.8 23.6 81 338-431 347-446 (485)
45 2hy7_A Glucuronosyltransferase 97.8 0.0036 1.2E-07 61.4 22.9 74 339-431 266-354 (406)
46 3qhp_A Type 1 capsular polysac 97.4 0.0024 8.1E-08 53.8 12.8 141 265-443 2-155 (166)
47 4gyw_A UDP-N-acetylglucosamine 97.3 0.0019 6.6E-08 68.2 13.7 101 263-384 521-630 (723)
48 2vsy_A XCC0866; transferase, g 97.3 0.0051 1.7E-07 63.1 16.5 84 338-431 434-524 (568)
49 3q3e_A HMW1C-like glycosyltran 97.1 0.0026 9E-08 64.7 11.0 139 265-431 441-590 (631)
50 2bfw_A GLGA glycogen synthase; 97.0 0.009 3.1E-07 51.8 12.7 89 339-441 96-194 (200)
51 3tov_A Glycosyl transferase fa 96.9 0.037 1.3E-06 52.9 17.3 107 3-133 6-115 (349)
52 1psw_A ADP-heptose LPS heptosy 96.9 0.2 6.9E-06 47.5 22.6 103 6-133 1-106 (348)
53 3rhz_A GTF3, nucleotide sugar 96.9 0.0016 5.4E-08 62.1 7.4 94 339-446 215-320 (339)
54 3oy2_A Glycosyltransferase B73 96.8 0.014 4.9E-07 57.0 13.7 77 340-431 256-357 (413)
55 2x0d_A WSAF; GT4 family, trans 93.8 0.11 3.7E-06 50.9 7.1 83 339-438 296-385 (413)
56 2wqk_A 5'-nucleotidase SURE; S 81.6 7 0.00024 34.9 9.1 112 7-136 3-127 (251)
57 3fgn_A Dethiobiotin synthetase 81.3 10 0.00035 33.8 10.2 125 3-137 23-166 (251)
58 2e6c_A 5'-nucleotidase SURE; S 80.8 13 0.00046 32.8 10.5 41 6-49 1-41 (244)
59 1j9j_A Stationary phase surviV 78.9 16 0.00053 32.5 10.3 42 6-50 1-42 (247)
60 2phj_A 5'-nucleotidase SURE; S 78.3 30 0.001 30.7 11.9 40 6-48 2-41 (251)
61 3vue_A GBSS-I, granule-bound s 77.1 21 0.00071 35.8 12.1 83 339-428 383-476 (536)
62 1l5x_A SurviVal protein E; str 76.6 6.1 0.00021 35.9 7.1 42 6-50 1-42 (280)
63 4dzz_A Plasmid partitioning pr 75.4 17 0.00057 30.7 9.6 83 6-117 1-85 (206)
64 3vue_A GBSS-I, granule-bound s 75.0 1.7 5.9E-05 43.8 3.5 39 4-43 8-52 (536)
65 3tqr_A Phosphoribosylglycinami 74.3 15 0.00051 31.8 8.8 111 1-137 1-114 (215)
66 3ty2_A 5'-nucleotidase SURE; s 74.2 15 0.00052 32.7 8.9 42 4-48 10-51 (261)
67 3vot_A L-amino acid ligase, BL 73.6 13 0.00043 36.1 9.2 99 1-131 1-101 (425)
68 2x0d_A WSAF; GT4 family, trans 73.1 2 6.8E-05 41.8 3.2 41 3-44 44-89 (413)
69 2v4n_A Multifunctional protein 71.2 32 0.0011 30.6 10.3 42 6-50 2-43 (254)
70 2gt1_A Lipopolysaccharide hept 70.9 2.5 8.6E-05 39.3 3.3 43 6-48 1-44 (326)
71 3nb0_A Glycogen [starch] synth 69.7 23 0.0008 36.5 10.1 45 340-386 495-552 (725)
72 1g5t_A COB(I)alamin adenosyltr 68.7 50 0.0017 28.0 10.6 101 6-118 29-131 (196)
73 2iz6_A Molybdenum cofactor car 68.3 43 0.0015 27.9 10.0 103 251-385 34-140 (176)
74 2gt1_A Lipopolysaccharide hept 67.7 7.2 0.00025 36.1 5.7 135 263-430 177-323 (326)
75 2i2c_A Probable inorganic poly 65.9 4.2 0.00014 36.9 3.6 53 356-429 35-93 (272)
76 3dfz_A SIRC, precorrin-2 dehyd 65.7 19 0.00067 31.3 7.7 154 257-449 26-186 (223)
77 2yxb_A Coenzyme B12-dependent 65.1 8 0.00027 31.9 4.8 107 4-132 17-125 (161)
78 1uqt_A Alpha, alpha-trehalose- 63.9 29 0.001 34.2 9.6 107 342-470 336-454 (482)
79 3auf_A Glycinamide ribonucleot 63.0 77 0.0026 27.6 11.2 110 4-137 21-132 (229)
80 3bfv_A CAPA1, CAPB2, membrane 61.8 37 0.0013 30.4 9.2 41 4-45 80-122 (271)
81 1ccw_A Protein (glutamate muta 59.7 12 0.00043 29.7 4.9 46 5-51 3-48 (137)
82 4b4o_A Epimerase family protei 59.5 92 0.0031 27.9 11.7 34 6-44 1-34 (298)
83 3iqw_A Tail-anchored protein t 57.1 65 0.0022 29.9 10.2 41 6-47 16-57 (334)
84 2ywr_A Phosphoribosylglycinami 57.1 53 0.0018 28.3 8.9 107 6-137 2-111 (216)
85 1xmp_A PURE, phosphoribosylami 56.7 82 0.0028 25.9 10.2 145 265-452 12-165 (170)
86 2i2x_B MTAC, methyltransferase 56.4 20 0.00069 32.0 6.3 48 4-52 122-169 (258)
87 3cio_A ETK, tyrosine-protein k 56.3 44 0.0015 30.4 8.8 41 4-45 102-144 (299)
88 1y80_A Predicted cobalamin bin 54.7 16 0.00053 31.5 5.1 48 4-52 87-134 (210)
89 3ezx_A MMCP 1, monomethylamine 54.0 20 0.00068 31.1 5.6 48 4-52 91-138 (215)
90 1yt5_A Inorganic polyphosphate 53.6 8.1 0.00028 34.7 3.1 53 357-430 42-97 (258)
91 3t5t_A Putative glycosyltransf 52.4 89 0.0031 30.8 10.6 110 340-470 354-473 (496)
92 3la6_A Tyrosine-protein kinase 51.8 59 0.002 29.4 8.7 40 5-45 91-132 (286)
93 3bgw_A DNAB-like replicative h 51.4 34 0.0012 33.3 7.5 45 7-52 199-243 (444)
94 3pnx_A Putative sulfurtransfer 51.3 16 0.00056 29.9 4.3 46 1-48 2-47 (160)
95 3zqu_A Probable aromatic acid 50.4 18 0.00063 31.1 4.7 44 1-47 1-44 (209)
96 1o4v_A Phosphoribosylaminoimid 49.7 1.1E+02 0.0038 25.4 10.5 143 265-451 14-164 (183)
97 3ug7_A Arsenical pump-driving 49.1 56 0.0019 30.5 8.4 40 6-46 26-66 (349)
98 1jkx_A GART;, phosphoribosylgl 48.1 1.3E+02 0.0045 25.7 11.2 109 6-138 1-111 (212)
99 3lqk_A Dipicolinate synthase s 47.5 24 0.00081 30.2 5.0 45 1-47 3-48 (201)
100 3dm5_A SRP54, signal recogniti 46.2 37 0.0013 33.0 6.7 44 5-49 100-143 (443)
101 1mvl_A PPC decarboxylase athal 45.2 26 0.00087 30.2 4.8 39 6-47 20-58 (209)
102 4grd_A N5-CAIR mutase, phospho 44.9 1.3E+02 0.0045 24.8 8.9 144 264-450 12-164 (173)
103 2r8r_A Sensor protein; KDPD, P 44.1 33 0.0011 29.9 5.4 41 5-46 6-46 (228)
104 1qgu_B Protein (nitrogenase mo 43.3 1.9E+02 0.0067 28.6 11.7 94 6-134 361-465 (519)
105 3av3_A Phosphoribosylglycinami 42.8 1.6E+02 0.0054 25.1 10.2 108 6-137 4-113 (212)
106 3qjg_A Epidermin biosynthesis 42.3 29 0.00097 28.9 4.5 41 6-48 6-46 (175)
107 3to5_A CHEY homolog; alpha(5)b 42.0 42 0.0014 26.4 5.3 40 95-136 47-95 (134)
108 3igf_A ALL4481 protein; two-do 40.3 82 0.0028 29.8 8.0 39 6-46 2-41 (374)
109 3da8_A Probable 5'-phosphoribo 40.1 1.8E+02 0.0061 25.0 9.5 108 4-137 11-120 (215)
110 2pju_A Propionate catabolism o 39.9 34 0.0012 29.8 4.8 30 356-386 63-92 (225)
111 3dfu_A Uncharacterized protein 39.6 19 0.00066 31.6 3.2 37 1-43 2-38 (232)
112 3u7q_B Nitrogenase molybdenum- 39.5 2.6E+02 0.009 27.7 11.9 34 96-134 429-469 (523)
113 2bw0_A 10-FTHFDH, 10-formyltet 38.6 1.2E+02 0.004 28.1 8.6 105 5-138 22-131 (329)
114 3hr8_A Protein RECA; alpha and 38.1 2.3E+02 0.0077 26.5 10.6 40 8-48 64-103 (356)
115 3kcq_A Phosphoribosylglycinami 37.8 1.4E+02 0.0047 25.7 8.4 104 4-137 7-113 (215)
116 1u11_A PURE (N5-carboxyaminoim 37.3 1.8E+02 0.0061 24.2 9.6 144 266-452 23-175 (182)
117 1xp8_A RECA protein, recombina 36.9 1.8E+02 0.0063 27.2 9.8 41 8-49 77-117 (366)
118 3gl9_A Response regulator; bet 36.5 66 0.0022 24.0 5.7 36 100-137 41-85 (122)
119 3mcu_A Dipicolinate synthase, 35.4 41 0.0014 28.9 4.5 41 4-46 4-45 (207)
120 1qzu_A Hypothetical protein MD 35.3 31 0.0011 29.6 3.8 42 4-47 18-60 (206)
121 1fmt_A Methionyl-tRNA FMet for 35.3 68 0.0023 29.5 6.4 110 3-137 1-112 (314)
122 1oeg_A Apolipoprotein E; siali 35.2 14 0.00046 20.0 0.9 16 463-478 2-17 (26)
123 3l4e_A Uncharacterized peptida 35.2 50 0.0017 28.2 5.1 47 253-299 17-63 (206)
124 4ds3_A Phosphoribosylglycinami 34.9 1.5E+02 0.0053 25.2 8.2 108 5-137 7-117 (209)
125 2lpm_A Two-component response 34.8 28 0.00095 27.0 3.1 35 99-135 47-86 (123)
126 2zts_A Putative uncharacterize 34.8 1.5E+02 0.0052 25.3 8.6 125 7-136 32-180 (251)
127 2q5c_A NTRC family transcripti 33.8 28 0.00096 29.6 3.3 32 354-386 49-80 (196)
128 4b4k_A N5-carboxyaminoimidazol 33.5 2.1E+02 0.007 23.8 10.1 145 265-452 23-176 (181)
129 1pjq_A CYSG, siroheme synthase 33.4 1.7E+02 0.0057 28.4 9.2 147 264-449 13-168 (457)
130 2dr3_A UPF0273 protein PH0284; 33.4 2.2E+02 0.0075 24.1 9.4 43 8-51 26-68 (247)
131 2an1_A Putative kinase; struct 32.9 20 0.00067 32.7 2.3 27 357-383 64-94 (292)
132 1qkk_A DCTD, C4-dicarboxylate 32.7 92 0.0032 24.3 6.3 49 375-430 74-122 (155)
133 1mio_B Nitrogenase molybdenum 32.7 2.2E+02 0.0076 27.6 10.0 34 96-134 376-409 (458)
134 3lyu_A Putative hydrogenase; t 32.2 1.8E+02 0.0062 22.7 9.3 112 6-132 19-135 (142)
135 3lp6_A Phosphoribosylaminoimid 32.1 2.1E+02 0.0073 23.5 9.5 140 266-449 9-156 (174)
136 3lrx_A Putative hydrogenase; a 31.7 41 0.0014 27.2 3.8 35 6-44 24-58 (158)
137 1u0t_A Inorganic polyphosphate 31.1 21 0.00071 32.9 2.1 28 357-384 76-107 (307)
138 1sbz_A Probable aromatic acid 30.8 51 0.0017 28.0 4.3 41 6-47 1-41 (197)
139 3goc_A Endonuclease V; alpha-b 30.6 89 0.0031 27.3 5.9 42 94-135 94-142 (237)
140 1kjn_A MTH0777; hypotethical p 30.5 38 0.0013 27.2 3.2 42 5-47 6-49 (157)
141 2w36_A Endonuclease V; hypoxan 30.0 88 0.003 27.1 5.7 43 94-136 90-139 (225)
142 1wcv_1 SOJ, segregation protei 29.9 39 0.0013 29.8 3.7 44 1-45 1-46 (257)
143 3zqe_A Protein PRGI, cell inva 29.9 58 0.002 29.4 4.7 57 417-481 28-85 (305)
144 3da8_A Probable 5'-phosphoribo 29.8 1.7E+02 0.0057 25.1 7.6 103 282-426 78-182 (215)
145 3ahc_A Phosphoketolase, xylulo 29.7 3.3E+02 0.011 28.8 11.0 83 359-455 726-813 (845)
146 4h3k_B RNA polymerase II subun 29.1 1.7E+02 0.0059 24.8 7.1 43 1-47 21-63 (214)
147 1id1_A Putative potassium chan 28.9 43 0.0015 26.7 3.5 32 6-43 4-35 (153)
148 3gi1_A LBP, laminin-binding pr 28.7 2.7E+02 0.0094 24.9 9.3 41 94-136 217-259 (286)
149 2q6t_A DNAB replication FORK h 28.7 53 0.0018 31.8 4.7 44 7-51 202-246 (444)
150 4ds3_A Phosphoribosylglycinami 28.5 1.4E+02 0.0049 25.4 6.9 102 282-425 75-178 (209)
151 3t6k_A Response regulator rece 28.4 1E+02 0.0034 23.5 5.6 42 95-138 38-88 (136)
152 3auf_A Glycinamide ribonucleot 28.1 1.7E+02 0.0058 25.4 7.4 103 282-426 90-194 (229)
153 1u94_A RECA protein, recombina 27.9 3E+02 0.01 25.5 9.7 41 7-48 65-105 (356)
154 2lnd_A De novo designed protei 27.8 60 0.002 22.7 3.4 50 374-428 49-100 (112)
155 3trh_A Phosphoribosylaminoimid 27.8 2.5E+02 0.0086 23.0 9.3 142 266-449 8-157 (169)
156 1meo_A Phosophoribosylglycinam 27.8 2E+02 0.0069 24.4 7.7 102 283-426 69-172 (209)
157 3av3_A Phosphoribosylglycinami 27.5 1.7E+02 0.0059 24.9 7.3 102 282-425 71-174 (212)
158 3f6p_A Transcriptional regulat 27.2 1.1E+02 0.0039 22.4 5.6 36 100-137 41-82 (120)
159 2ejb_A Probable aromatic acid 27.2 78 0.0027 26.6 4.9 41 6-48 2-42 (189)
160 3p9x_A Phosphoribosylglycinami 26.7 1.9E+02 0.0065 24.7 7.3 102 282-425 70-173 (211)
161 3mc3_A DSRE/DSRF-like family p 26.5 1E+02 0.0035 24.0 5.3 29 15-44 28-56 (134)
162 2vqe_B 30S ribosomal protein S 26.4 3.4E+02 0.011 24.0 10.6 34 105-138 156-191 (256)
163 3m6m_D Sensory/regulatory prot 26.4 84 0.0029 24.2 4.8 35 101-137 54-99 (143)
164 3o1l_A Formyltetrahydrofolate 26.1 1.8E+02 0.0061 26.5 7.4 106 279-426 167-274 (302)
165 3qvl_A Putative hydantoin race 26.0 3.3E+02 0.011 23.7 9.6 28 107-134 69-97 (245)
166 1jkx_A GART;, phosphoribosylgl 26.0 1.9E+02 0.0066 24.6 7.3 103 282-426 68-172 (212)
167 3tqr_A Phosphoribosylglycinami 25.9 2E+02 0.0067 24.7 7.3 103 282-426 72-176 (215)
168 2r6a_A DNAB helicase, replicat 25.9 95 0.0032 30.1 6.0 43 7-50 205-248 (454)
169 1p9o_A Phosphopantothenoylcyst 25.8 54 0.0019 30.1 3.9 23 21-44 67-89 (313)
170 3kjh_A CO dehydrogenase/acetyl 25.4 53 0.0018 28.4 3.8 38 6-44 1-38 (254)
171 1lss_A TRK system potassium up 25.2 55 0.0019 25.1 3.5 33 5-43 4-36 (140)
172 3kcq_A Phosphoribosylglycinami 25.1 1.6E+02 0.0056 25.2 6.6 101 283-425 72-174 (215)
173 1meo_A Phosophoribosylglycinam 25.0 3.2E+02 0.011 23.2 11.1 108 6-137 1-110 (209)
174 1ydn_A Hydroxymethylglutaryl-C 24.9 3.7E+02 0.013 24.0 9.6 24 277-300 23-46 (295)
175 2qs7_A Uncharacterized protein 24.9 86 0.0029 24.9 4.5 38 8-46 11-48 (144)
176 3ogi_A ESXP, putative ESAT-6-l 24.8 1.1E+02 0.0039 21.6 4.4 45 432-476 14-66 (101)
177 1q57_A DNA primase/helicase; d 24.7 4.9E+02 0.017 25.3 11.4 44 8-51 245-288 (503)
178 4hb9_A Similarities with proba 24.4 49 0.0017 31.1 3.6 30 5-40 1-30 (412)
179 1pq4_A Periplasmic binding pro 24.2 3.9E+02 0.013 23.9 10.0 41 94-136 226-268 (291)
180 3ga2_A Endonuclease V; alpha-b 24.2 1.1E+02 0.0037 27.0 5.2 42 94-135 96-144 (246)
181 1g63_A Epidermin modifying enz 24.1 66 0.0023 26.9 3.8 40 7-48 4-43 (181)
182 3obi_A Formyltetrahydrofolate 23.8 1.7E+02 0.0057 26.5 6.7 103 282-426 155-259 (288)
183 4e5s_A MCCFLIKE protein (BA_56 23.8 1.7E+02 0.0059 27.0 7.0 28 276-303 61-88 (331)
184 3lou_A Formyltetrahydrofolate 23.5 1.7E+02 0.0058 26.5 6.7 103 282-426 160-264 (292)
185 3pdi_B Nitrogenase MOFE cofact 23.5 79 0.0027 30.8 4.8 34 96-134 366-399 (458)
186 4g65_A TRK system potassium up 23.4 54 0.0019 32.0 3.6 34 4-43 2-35 (461)
187 3k9g_A PF-32 protein; ssgcid, 23.3 72 0.0025 28.1 4.3 44 1-46 22-67 (267)
188 2l2q_A PTS system, cellobiose- 23.0 1E+02 0.0036 23.0 4.5 38 3-41 2-39 (109)
189 3e18_A Oxidoreductase; dehydro 23.0 3.1E+02 0.011 25.3 8.8 63 344-406 53-122 (359)
190 2r6j_A Eugenol synthase 1; phe 22.8 75 0.0026 28.8 4.4 33 7-44 13-45 (318)
191 3nrb_A Formyltetrahydrofolate 22.7 1.6E+02 0.0055 26.6 6.4 103 282-426 154-258 (287)
192 4g6h_A Rotenone-insensitive NA 22.7 43 0.0015 33.2 2.8 36 3-44 40-75 (502)
193 3euw_A MYO-inositol dehydrogen 22.5 3.3E+02 0.011 24.8 8.9 63 344-406 53-122 (344)
194 3bul_A Methionine synthase; tr 22.3 88 0.003 31.5 4.9 48 4-52 97-144 (579)
195 3llv_A Exopolyphosphatase-rela 22.1 51 0.0017 25.7 2.6 32 6-43 7-38 (141)
196 3e9m_A Oxidoreductase, GFO/IDH 22.0 4.3E+02 0.015 23.9 9.5 62 345-406 56-124 (330)
197 3s40_A Diacylglycerol kinase; 22.0 1.5E+02 0.0053 26.7 6.3 28 357-384 64-97 (304)
198 4dim_A Phosphoribosylglycinami 21.9 4.4E+02 0.015 24.5 9.9 32 6-43 8-39 (403)
199 3cmw_A Protein RECA, recombina 21.9 6E+02 0.02 29.4 12.0 43 7-50 385-427 (1706)
200 2r85_A PURP protein PF1517; AT 21.6 76 0.0026 28.9 4.2 33 5-44 2-34 (334)
201 1p3y_1 MRSD protein; flavoprot 21.6 72 0.0025 26.9 3.6 39 6-46 9-47 (194)
202 3tl4_X Glutaminyl-tRNA synthet 21.5 53 0.0018 27.6 2.7 51 387-448 100-154 (187)
203 2fb6_A Conserved hypothetical 21.5 1E+02 0.0035 23.5 4.2 41 1-43 4-48 (117)
204 4egs_A Ribose 5-phosphate isom 21.5 80 0.0027 26.3 3.8 29 1-29 30-58 (180)
205 3lay_A Zinc resistance-associa 21.5 2.8E+02 0.0094 22.9 7.0 42 435-476 90-131 (175)
206 3n0v_A Formyltetrahydrofolate 21.4 1.9E+02 0.0066 26.0 6.6 103 282-426 155-259 (286)
207 1hdo_A Biliverdin IX beta redu 21.2 1.1E+02 0.0038 25.1 4.9 33 6-43 4-36 (206)
208 2q5c_A NTRC family transcripti 21.2 55 0.0019 27.7 2.8 41 96-139 130-171 (196)
209 3k96_A Glycerol-3-phosphate de 21.2 57 0.002 30.6 3.2 37 1-43 25-61 (356)
210 1v5e_A Pyruvate oxidase; oxido 21.1 1.3E+02 0.0046 30.2 6.2 28 356-383 68-101 (590)
211 2etv_A Iron(III) ABC transport 21.1 81 0.0028 29.2 4.3 35 99-135 90-125 (346)
212 3c3m_A Response regulator rece 21.1 1.6E+02 0.0053 22.3 5.5 35 100-136 42-85 (138)
213 1zu4_A FTSY; GTPase, signal re 21.0 2.5E+02 0.0086 25.6 7.5 41 7-48 107-147 (320)
214 2ywr_A Phosphoribosylglycinami 21.0 2.2E+02 0.0076 24.3 6.7 102 282-425 69-172 (216)
215 1ozh_A ALS, acetolactate synth 21.0 3.7E+02 0.013 26.7 9.5 27 357-383 74-106 (566)
216 3eag_A UDP-N-acetylmuramate:L- 21.0 94 0.0032 28.5 4.6 35 3-42 2-36 (326)
217 3md9_A Hemin-binding periplasm 20.4 1E+02 0.0034 26.9 4.5 35 99-135 53-89 (255)
218 3q2i_A Dehydrogenase; rossmann 20.3 3.6E+02 0.012 24.7 8.7 63 344-406 63-132 (354)
219 3cg0_A Response regulator rece 20.1 1.6E+02 0.0054 22.1 5.3 36 100-137 49-91 (140)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=1e-70 Score=549.85 Aligned_cols=434 Identities=26% Similarity=0.393 Sum_probs=344.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCC--CeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCcc
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQND--FQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADAS 81 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~G--h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 81 (481)
.++||+++|+|++||++|++.||+.|+++ | +.|||++++.+...+.+... ...++++|++++....++. ....+
T Consensus 12 ~~~hvv~~P~p~~GHi~P~l~Lak~L~~~-g~~~~vT~~~t~~~~~~~~~~~~--~~~~~i~~~~ipdglp~~~-~~~~~ 87 (454)
T 3hbf_A 12 NLLHVAVLAFPFGTHAAPLLSLVKKIATE-APKVTFSFFCTTTTNDTLFSRSN--EFLPNIKYYNVHDGLPKGY-VSSGN 87 (454)
T ss_dssp CCCEEEEECCCSSSSHHHHHHHHHHHHHH-CTTSEEEEEECHHHHHHSCSSSS--CCCTTEEEEECCCCCCTTC-CCCSC
T ss_pred CCCEEEEEcCCcccHHHHHHHHHHHHHhC-CCCEEEEEEeCHHHHHhhhcccc--cCCCCceEEecCCCCCCCc-cccCC
Confidence 35899999999999999999999999999 9 99999999744433221110 1125799999985322221 11111
Q ss_pred HHHHHHHHHHHhhHHHHHHHhh----cCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhc
Q 011608 82 IVIKIIFMMRESLPALRSSIST----LKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQE 157 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~----~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 157 (481)
....+..+.+.+.+.+++.+++ ...++||||+|.+++|+..+|+++|||++.|++++++.++.+++.+.+......
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~~ 167 (454)
T 3hbf_A 88 PREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGS 167 (454)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHHTCCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHhhcCC
Confidence 2222333333333344444443 245899999999999999999999999999999999999888887765543211
Q ss_pred cccCCCCCcc-CCCCcccCccccccccc-CCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeee
Q 011608 158 EHYGRKQPLM-IPGCRSVRFQDTLEAFT-DPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYP 235 (481)
Q Consensus 158 ~~~~~~~~~~-~pg~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~ 235 (481)
........+. +||+++++.++++..+. .........+.+..+...+++++++||+.++|+..++++.+. .|++++
T Consensus 168 ~~~~~~~~~~~iPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~~---~~~v~~ 244 (454)
T 3hbf_A 168 KEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSK---FKLLLN 244 (454)
T ss_dssp HHHTTSSCBCCSTTSCCBCGGGSCTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHTT---SSCEEE
T ss_pred CccccccccccCCCCCCcChhhCchhhccCCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHhc---CCCEEE
Confidence 1111223343 89998999999998766 334445666677777888999999999999999999888866 578999
Q ss_pred eCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCccccc
Q 011608 236 IGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKV 315 (481)
Q Consensus 236 vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~ 315 (481)
|||++.....+....++++.+||+.+++++||||||||+...+.+++.+++.+|++++++|||+++...
T Consensus 245 vGPl~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~~----------- 313 (454)
T 3hbf_A 245 VGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDP----------- 313 (454)
T ss_dssp CCCHHHHSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSCH-----------
T ss_pred ECCcccccccccccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc-----------
Confidence 999986432221124678999999988899999999999988999999999999999999999986431
Q ss_pred CCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHHHH
Q 011608 316 GDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATML 395 (481)
Q Consensus 316 ~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v 395 (481)
...+|++|.++.+. |+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++
T Consensus 314 --------~~~lp~~~~~~~~~-~~~vv~w~Pq~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v 384 (454)
T 3hbf_A 314 --------KEKLPKGFLERTKT-KGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILT 384 (454)
T ss_dssp --------HHHSCTTHHHHTTT-TEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH
T ss_pred --------hhcCCHhHHhhcCC-ceEEEeeCCHHHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCcccccHHHHHHHH
Confidence 13577888887765 666669999999999999999999999999999999999999999999999999999
Q ss_pred HHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 011608 396 AEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCE 468 (481)
Q Consensus 396 ~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (481)
++.+|+|+.++. +.+++++|+++|+++|.|++++.||+||++|++.+++++.+||++++++++|++++.
T Consensus 385 ~~~~g~Gv~l~~----~~~~~~~l~~av~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~i~ 453 (454)
T 3hbf_A 385 ESVLEIGVGVDN----GVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVT 453 (454)
T ss_dssp HTTSCSEEECGG----GSCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHT
T ss_pred HHhhCeeEEecC----CCCCHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHh
Confidence 533799999974 679999999999999988767789999999999999999999999999999999863
No 2
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=100.00 E-value=1.6e-66 Score=528.26 Aligned_cols=461 Identities=41% Similarity=0.740 Sum_probs=344.7
Q ss_pred CCCCC-cEEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEecCCC--chhhhhhccCCCCCCceEEEecCCCCCCCCC
Q 011608 1 MQTTK-THIALLASPGMGHFIPVLELGKRFAT-QNDFQVTIFVVATD--TSTVQSQLRNLPNPHLFNIVSLPPVDISALL 76 (481)
Q Consensus 1 m~~~~-~~vvl~~~p~~GHi~P~l~La~~L~~-r~Gh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (481)
|+.++ +||+++|+|++||++|++.||++|++ + ||+|||++++.+ ...+.+...... .+++|++++....++.
T Consensus 1 M~~~~~~~vl~~p~p~~GHv~P~l~La~~L~~r~-Gh~Vt~~t~~~~~~~~~~~~~~~~~~--~~i~~~~l~~~~~~~~- 76 (480)
T 2vch_A 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLH-GLTVTFVIAGEGPPSKAQRTVLDSLP--SSISSVFLPPVDLTDL- 76 (480)
T ss_dssp -----CCEEEEECCSCHHHHHHHHHHHHHHHHHH-CCEEEEEECCSSSCC-CHHHHHC-CC--TTEEEEECCCCCCTTS-
T ss_pred CCCCCCcEEEEecCcchhHHHHHHHHHHHHHhCC-CCEEEEEECCCcchhhhhhhhccccC--CCceEEEcCCCCCCCC-
Confidence 55544 89999999999999999999999997 5 899999999873 333332111111 4799999986432222
Q ss_pred CCCccHHHHHHHHHHHhhHHHHHHHhhc--CCCC-cEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchh
Q 011608 77 DADASIVIKIIFMMRESLPALRSSISTL--KPRP-TALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDK 153 (481)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~-D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~ 153 (481)
....+....+......+.+.++++++++ ..++ ||||+|.++.|+..+|+++|||++.++++++..++...++|....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 156 (480)
T 2vch_A 77 SSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDE 156 (480)
T ss_dssp CTTCCHHHHHHHHHHTTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHhhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHHHHHHHh
Confidence 1112333334444555667777777764 3478 999999999999999999999999999999887777766665443
Q ss_pred hhhccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCe
Q 011608 154 RLQEEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPI 233 (481)
Q Consensus 154 ~~~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~ 233 (481)
...........+..+|+++++...+++..+..+....+..+.+.....++.++++.||+.+++...+..+.+..+.+|++
T Consensus 157 ~~~~~~~~~~~~~~~Pg~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l~~~~~~~~~v 236 (480)
T 2vch_A 157 TVSCEFRELTEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPV 236 (480)
T ss_dssp HCCSCGGGCSSCBCCTTCCCBCGGGSCGGGSCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHHSCCTTCCCE
T ss_pred cCCCcccccCCcccCCCCCCCChHHCchhhhcCCchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHHHhcccCCCcE
Confidence 22211111122345778777777777766655444445555555666778889999999999999888887631225679
Q ss_pred eeeCCcccCCCCC-CCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcc
Q 011608 234 YPIGPVVRSMGSS-HMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSF 312 (481)
Q Consensus 234 ~~vGpl~~~~~~~-~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~ 312 (481)
++|||++...... ....++++.+||++++++++|||||||+...+.+++.+++++|+.++++|||+++.....+.+ ..
T Consensus 237 ~~vGpl~~~~~~~~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~-~~ 315 (480)
T 2vch_A 237 YPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANS-SY 315 (480)
T ss_dssp EECCCCCCCSCSCC-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTT-TT
T ss_pred EEEeccccccccccCccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccccc-cc
Confidence 9999998653210 012567899999998888999999999988889999999999999999999999764210000 00
Q ss_pred cccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhH
Q 011608 313 FKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNA 392 (481)
Q Consensus 313 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na 392 (481)
+..++ .......+|++|.+++++.++++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.||
T Consensus 316 ~~~~~--~~~~~~~lp~~~~~~~~~~g~~v~~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~GvP~i~~P~~~DQ~~na 393 (480)
T 2vch_A 316 FDSHS--QTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNA 393 (480)
T ss_dssp TCC----CSCGGGGSCTTHHHHTTTTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHH
T ss_pred ccccc--ccchhhhcCHHHHHHhCCCeEEEeCccCHHHHhCCCCcCeEEecccchhHHHHHHcCCCEEeccccccchHHH
Confidence 00000 0001125889999998888888877999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 011608 393 TMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEM 469 (481)
Q Consensus 393 ~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 469 (481)
+++++++|+|+.++.. ++..+++++|+++|+++|.++++..||+||+++++.+++++.+||+++.++++|+++++.
T Consensus 394 ~~l~~~~G~g~~l~~~-~~~~~~~~~l~~av~~vl~~~~~~~~r~~a~~l~~~~~~a~~~gGss~~~~~~~v~~~~~ 469 (480)
T 2vch_A 394 VLLSEDIRAALRPRAG-DDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWKA 469 (480)
T ss_dssp HHHHHTTCCEECCCCC-TTSCCCHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCeEEEeecc-cCCccCHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9975799999998731 112689999999999999866566799999999999999999999999999999999865
No 3
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=1.2e-62 Score=501.37 Aligned_cols=439 Identities=27% Similarity=0.536 Sum_probs=324.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccC--CCCCCceEEEecCCCCCCCC--CCCCc
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRN--LPNPHLFNIVSLPPVDISAL--LDADA 80 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~~~ 80 (481)
++||+++|+|++||++|++.||++|++| ||+|||++++.+...+.+.... ....++++|++++....... .....
T Consensus 8 ~~~vl~~p~p~~GHi~P~l~La~~L~~r-G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~lp~~~~~~~~~~ 86 (482)
T 2pq6_A 8 KPHVVMIPYPVQGHINPLFKLAKLLHLR-GFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPDGLTPMEGDGDVSQ 86 (482)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHT-TCEEEEEEEHHHHHHHC------------CEEEEEECCCCC---------C
T ss_pred CCEEEEecCccchhHHHHHHHHHHHHhC-CCeEEEEeCCchhhhhccccccccccCCCceEEEECCCCCCCcccccCcch
Confidence 4799999999999999999999999999 9999999999654433221000 00013799999984211100 00011
Q ss_pred cHHHHHHHHHHHhhHHHHHHHhhc-----CCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhh-
Q 011608 81 SIVIKIIFMMRESLPALRSSISTL-----KPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKR- 154 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~- 154 (481)
+....+..+...+.+.++++++++ ..++||||+|.++.|+..+|+++|||++.++++++..+....++|.+...
T Consensus 87 ~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 166 (482)
T 2pq6_A 87 DVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERG 166 (482)
T ss_dssp CHHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTTHHHHHHTT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHHHHHHHHhcC
Confidence 222222222245567777777765 14899999999999999999999999999999988776655444322111
Q ss_pred -hhcccc-----C-CCCCc-cCCCCcccCcccccccccCC--CchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHH
Q 011608 155 -LQEEHY-----G-RKQPL-MIPGCRSVRFQDTLEAFTDP--KDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLR 224 (481)
Q Consensus 155 -~~~~~~-----~-~~~~~-~~pg~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~ 224 (481)
.+.... . ..... .+|+++++...+++..+... .......+.+......+.+++++||+.++|++..+.+.
T Consensus 167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~nt~~~le~~~~~~~~ 246 (482)
T 2pq6_A 167 IIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALS 246 (482)
T ss_dssp CSSCSSGGGGTSSGGGCBCCSSTTCCSCBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESSCGGGGHHHHHHHH
T ss_pred CCCCccccccccccccCccccCCCCCCCchHHCchhhccCCcccHHHHHHHHHHHhhccCCEEEEcChHHHhHHHHHHHH
Confidence 110000 0 01111 24666556666665554322 22333344444556678899999999999999888877
Q ss_pred hccCCCCCeeeeCCcccC-CCC-----------CCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC
Q 011608 225 DGISKLPPIYPIGPVVRS-MGS-----------SHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS 292 (481)
Q Consensus 225 ~~~~~~p~~~~vGpl~~~-~~~-----------~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~ 292 (481)
+. +|++++|||++.. +.. .....+.++.+||++++++++|||||||+...+.+++.+++.+|+.+
T Consensus 247 ~~---~~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~ 323 (482)
T 2pq6_A 247 ST---IPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANC 323 (482)
T ss_dssp TT---CTTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHHHHHHHHHHHHT
T ss_pred Hh---CCcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCcccCCHHHHHHHHHHHHhc
Confidence 65 4679999999753 111 10113456899999988889999999999888889999999999999
Q ss_pred CCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHH
Q 011608 293 QQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLES 372 (481)
Q Consensus 293 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~ea 372 (481)
+++|+|+++..... + ....+|++|.++.+. |+.+.+|+||.++|+|+++++|||||||||++||
T Consensus 324 ~~~~l~~~~~~~~~-------------~--~~~~l~~~~~~~~~~-~~~v~~~~pq~~~L~h~~~~~~vth~G~~s~~Ea 387 (482)
T 2pq6_A 324 KKSFLWIIRPDLVI-------------G--GSVIFSSEFTNEIAD-RGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTES 387 (482)
T ss_dssp TCEEEEECCGGGST-------------T--TGGGSCHHHHHHHTT-TEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHH
T ss_pred CCcEEEEEcCCccc-------------c--ccccCcHhHHHhcCC-CEEEEeecCHHHHhcCCCCCEEEecCCcchHHHH
Confidence 99999998643110 1 012378888887754 7788899999999999999999999999999999
Q ss_pred HHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Q 011608 373 IVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTK 452 (481)
Q Consensus 373 l~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~ 452 (481)
+++|||||++|+++||+.||+++++++|+|+.++ +.+++++|+++|+++|.|++++.||+||+++++.+++++.+
T Consensus 388 l~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~-----~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~ 462 (482)
T 2pq6_A 388 ICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID-----TNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRP 462 (482)
T ss_dssp HHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECC-----SSCCHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHcCCCEEecCcccchHHHHHHHHHHhCEEEEEC-----CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999855799999986 56899999999999999876777999999999999999999
Q ss_pred CCChHHHHHHHHHHHH
Q 011608 453 GGSSYNALSQVAKQCE 468 (481)
Q Consensus 453 ~g~~~~~~~~~~~~~~ 468 (481)
||++++++++|++++.
T Consensus 463 gGss~~~l~~~v~~~~ 478 (482)
T 2pq6_A 463 GGCSYMNLNKVIKDVL 478 (482)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999999999999874
No 4
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=6.7e-62 Score=492.47 Aligned_cols=433 Identities=29% Similarity=0.572 Sum_probs=333.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchh-hhh---hccCCCCCCceEEEecCCCCCCCCCCCC
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTST-VQS---QLRNLPNPHLFNIVSLPPVDISALLDAD 79 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 79 (481)
++||+++|+|++||++|++.||++|++|+ ||+|||++++.+... +.+ .+.... .+++|++++....++. ...
T Consensus 9 ~~~vv~~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~--~~i~~~~lp~~~~~~~-~~~ 85 (463)
T 2acv_A 9 NSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQ--PQIQLIDLPEVEPPPQ-ELL 85 (463)
T ss_dssp CEEEEEECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSC--TTEEEEECCCCCCCCG-GGG
T ss_pred CCEEEEEcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcccCC--CCceEEECCCCCCCcc-ccc
Confidence 48999999999999999999999999885 799999999975321 111 112222 4799999986432211 000
Q ss_pred ccHHHHHHHHHHHhhHHHHHHHhhc-CCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhcc
Q 011608 80 ASIVIKIIFMMRESLPALRSSISTL-KPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEE 158 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (481)
......+......+.+.++++++++ ..++||||+|.++.|+..+|+++|||+++++++++..+....++|.+... ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~--~~ 163 (463)
T 2acv_A 86 KSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIE--EV 163 (463)
T ss_dssp GSHHHHHHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGGSCTT--CC
T ss_pred CCccHHHHHHHHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHHhhccc--CC
Confidence 1111114444556667888888773 23899999999999999999999999999999998888777777654311 11
Q ss_pred ccCCCC---CccCCCC-cccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCee
Q 011608 159 HYGRKQ---PLMIPGC-RSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIY 234 (481)
Q Consensus 159 ~~~~~~---~~~~pg~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~ 234 (481)
...... ...+|++ +++..++++..+.++ ...+..+.+.....++.+++++||+.++|+...+++.+...+.|+++
T Consensus 164 ~~~~~~~~~~~~~pg~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l~~~~~p~~~v~ 242 (463)
T 2acv_A 164 FDDSDRDHQLLNIPGISNQVPSNVLPDACFNK-DGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIY 242 (463)
T ss_dssp CCCSSGGGCEECCTTCSSCEEGGGSCHHHHCT-TTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHCTTSCCEE
T ss_pred CCCccccCceeECCCCCCCCChHHCchhhcCC-chHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHHHhccccCCcEE
Confidence 111111 3457887 777777776555444 33555555666667888899999999999999888877421135699
Q ss_pred eeCCcccCCC-CCCC---CCchhhhhhhccCCCCcEEEEEeCCCC-CCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCC
Q 011608 235 PIGPVVRSMG-SSHM---SENSSLLEWLDMQPTESVIYVSFGGGG-TLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVS 309 (481)
Q Consensus 235 ~vGpl~~~~~-~~~~---~~~~~~~~~l~~~~~~~vv~vs~GS~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 309 (481)
+|||++.... .... ..+.++.+||+.++++++|||||||+. ..+.+++.+++.+|+..+++|||+++..
T Consensus 243 ~vGpl~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~------ 316 (463)
T 2acv_A 243 AVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAE------ 316 (463)
T ss_dssp ECCCCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred EeCCCcccccccccccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCC------
Confidence 9999986532 1000 135689999999888899999999998 7888889999999999999999998532
Q ss_pred CcccccCCCCCCCCCCCCchhHHhhh--cCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccc
Q 011608 310 GSFFKVGDGSSDGTPDYLPDGFLTRN--AKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAE 387 (481)
Q Consensus 310 ~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~D 387 (481)
...+|++|.++. +. ++.+.+|+||.++|+|+++++|||||||||++||+++|||||++|+++|
T Consensus 317 --------------~~~l~~~~~~~~~~~~-~~~v~~w~pq~~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P~~~d 381 (463)
T 2acv_A 317 --------------KKVFPEGFLEWMELEG-KGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAE 381 (463)
T ss_dssp --------------GGGSCTTHHHHHHHHC-SEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCSTT
T ss_pred --------------cccCChhHHHhhccCC-CEEEEccCCHHHHhCCCccCeEEecCCchhHHHHHHcCCCeeeccchhh
Confidence 023667787766 44 5667789999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhceeEec-cccCCCC--ccCHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 011608 388 QKMNATMLAEELGVAVRP-NEMPTEN--LVKREEIEMMVRRILVD-KEGQALRSRVKELKHSAKKASTKGGSSYNALSQV 463 (481)
Q Consensus 388 Q~~na~~v~~~~G~g~~~-~~~~~~~--~~~~~~l~~al~~vl~~-~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~ 463 (481)
|+.||+++++++|+|+.+ +..+ ++ .+++++|+++|+++|++ ++ ||+||+++++.+++++.+||+++.++++|
T Consensus 382 Q~~Na~~lv~~~g~g~~l~~~~~-~~~~~~~~~~l~~ai~~ll~~~~~---~r~~a~~l~~~~~~a~~~gGss~~~l~~~ 457 (463)
T 2acv_A 382 QQLNAFRLVKEWGVGLGLRVDYR-KGSDVVAAEEIEKGLKDLMDKDSI---VHKKVQEMKEMSRNAVVDGGSSLISVGKL 457 (463)
T ss_dssp HHHHHHHHHHTSCCEEESCSSCC-TTCCCCCHHHHHHHHHHHTCTTCT---HHHHHHHHHHHHHHHTSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHcCeEEEEecccC-CCCccccHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999954799999998 3111 14 68999999999999973 56 99999999999999999999999999999
Q ss_pred HHHHH
Q 011608 464 AKQCE 468 (481)
Q Consensus 464 ~~~~~ 468 (481)
|+++.
T Consensus 458 v~~~~ 462 (463)
T 2acv_A 458 IDDIT 462 (463)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99874
No 5
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=4.7e-62 Score=492.25 Aligned_cols=435 Identities=25% Similarity=0.414 Sum_probs=316.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCe--EEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCcc
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQ--VTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADAS 81 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~--Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 81 (481)
+++||+++|+|++||++|++.||++|++| ||+ |||++++.+...+.+..... ...+++|++++....+.. .....
T Consensus 6 ~~~hvv~~p~p~~GHi~P~l~la~~L~~r-Gh~v~vt~~~t~~~~~~~~~~~~~~-~~~~i~~~~i~~glp~~~-~~~~~ 82 (456)
T 2c1x_A 6 TNPHVAVLAFPFSTHAAPLLAVVRRLAAA-APHAVFSFFSTSQSNASIFHDSMHT-MQCNIKSYDISDGVPEGY-VFAGR 82 (456)
T ss_dssp -CCEEEEECCCSSSSHHHHHHHHHHHHHH-CTTSEEEEEECHHHHHHHC--------CTTEEEEECCCCCCTTC-CCCCC
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHhC-CCCeEEEEEeCchhHHHhhcccccc-CCCceEEEeCCCCCCCcc-cccCC
Confidence 45899999999999999999999999999 765 57787763322221110000 014799999875211111 00111
Q ss_pred HHHHHHHHHHHhhHHHHHHHh----hcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhh-
Q 011608 82 IVIKIIFMMRESLPALRSSIS----TLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQ- 156 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~----~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~- 156 (481)
....+..+...+...++++++ +...++||||+|.++.|+..+|+++|||++.++++++..+....+.+.+.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (456)
T 2c1x_A 83 PQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGV 162 (456)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHHHHHHCS
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhhHHHHhccCC
Confidence 112222222222233333333 323589999999999999999999999999999998877666544443322211
Q ss_pred -ccccCCCCCc-cCCCCcccCcccccccccCCC--chhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCC
Q 011608 157 -EEHYGRKQPL-MIPGCRSVRFQDTLEAFTDPK--DQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPP 232 (481)
Q Consensus 157 -~~~~~~~~~~-~~pg~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~ 232 (481)
.......+.+ .+|++++++..+++..+.... ......+.+.....++.+++++||+.++|......+.+. +|+
T Consensus 163 ~~~~~~~~~~~~~~pg~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~~~~~~~~~---~~~ 239 (456)
T 2c1x_A 163 SGIQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSK---LKT 239 (456)
T ss_dssp SCCTTCTTCBCTTSTTCTTCBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHHH---SSC
T ss_pred cccccccccccccCCCCCcccHHhCchhhcCCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHHHHHHHHhc---CCC
Confidence 0000111122 367777777777765443221 122223333334557788999999999999988877766 468
Q ss_pred eeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcc
Q 011608 233 IYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSF 312 (481)
Q Consensus 233 ~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~ 312 (481)
+++|||++..........+.++.+|++.++++++|||||||+...+.+++.+++.+|+..+++|||+++...
T Consensus 240 ~~~vGpl~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~-------- 311 (456)
T 2c1x_A 240 YLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKA-------- 311 (456)
T ss_dssp EEECCCHHHHC---------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGG--------
T ss_pred EEEecCcccCcccccccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcc--------
Confidence 999999986432110112456999999988889999999999888888899999999999999999985431
Q ss_pred cccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhH
Q 011608 313 FKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNA 392 (481)
Q Consensus 313 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na 392 (481)
...+|++|.++.+. |+.+.+|+||.++|+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 312 -----------~~~l~~~~~~~~~~-~~~v~~w~pq~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na 379 (456)
T 2c1x_A 312 -----------RVHLPEGFLEKTRG-YGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNG 379 (456)
T ss_dssp -----------GGGSCTTHHHHHTT-TEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHH
T ss_pred -----------hhhCCHHHHhhcCC-ceEEecCCCHHHHhcCCcCCEEEecCCcchHHHHHHhCceEEecCChhhHHHHH
Confidence 13477788776644 677779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 011608 393 TMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCE 468 (481)
Q Consensus 393 ~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 468 (481)
+++++.+|+|+.++. ..+++++|+++|+++|.|++++.||+||+++++.+++++.+||+++.++++|++++.
T Consensus 380 ~~l~~~~g~g~~l~~----~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~~~ 451 (456)
T 2c1x_A 380 RMVEDVLEIGVRIEG----GVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVS 451 (456)
T ss_dssp HHHHHTSCCEEECGG----GSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCeEEEecC----CCcCHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Confidence 999533499999874 679999999999999988767779999999999999999999999999999999874
No 6
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=100.00 E-value=7.6e-45 Score=362.80 Aligned_cols=345 Identities=16% Similarity=0.192 Sum_probs=222.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCC-C--------CC
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVD-I--------SA 74 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~--------~~ 74 (481)
+.|||+|+|+|+.||++|+++||++|++| ||+|||++++.+..... .++.+.++.... . ..
T Consensus 21 ~~MRIL~~~~p~~GHv~P~l~LA~~L~~r-Gh~Vt~~t~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~ 90 (400)
T 4amg_A 21 QSMRALFITSPGLSHILPTVPLAQALRAL-GHEVRYATGGDIRAVAE---------AGLCAVDVSPGVNYAKLFVPDDTD 90 (400)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHT-TCEEEEEECSSTHHHHT---------TTCEEEESSTTCCSHHHHSCCC--
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHHC-CCEEEEEeCcchhhHHh---------cCCeeEecCCchhHhhhccccccc
Confidence 35999999999999999999999999999 99999999986655322 245555554211 0 00
Q ss_pred CCCCC---c----cHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhh
Q 011608 75 LLDAD---A----SIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIY 147 (481)
Q Consensus 75 ~~~~~---~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~ 147 (481)
..... . .....+..........+.+.++++ +||+||+|.+..++..+|+.+|||++.+...+........
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~- 167 (400)
T 4amg_A 91 VTDPMHSEGLGEGFFAEMFARVSAVAVDGALRTARSW--RPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPGLG- 167 (400)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHHHH-
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEECcchHHHHHHHHHcCCCceeecccccccccchh-
Confidence 00000 0 011112223334455667778888 9999999999999999999999999987654321100000
Q ss_pred cccchhhhhccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhh-hhcccceEEecChhhhcHHHHHHHHhc
Q 011608 148 FPTIDKRLQEEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGL-EMVTADGILINTWEDLEPTTLASLRDG 226 (481)
Q Consensus 148 ~p~~~~~~~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~l~~~~~~~~~~~ 226 (481)
.... ........... ............. ........+.
T Consensus 168 -----~~~~--------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 206 (400)
T 4amg_A 168 -----ALIR--------------------------------RAMSKDYERHGVTGEPTGSVRLTTT----PPSVEALLPE 206 (400)
T ss_dssp -----HHHH--------------------------------HHTHHHHHHTTCCCCCSCEEEEECC----CHHHHHTSCG
T ss_pred -----hHHH--------------------------------HHHHHHHHHhCCCcccccchhhccc----CchhhccCcc
Confidence 0000 00000000000 0000001111110 1111111111
Q ss_pred cCCCCCeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCC--hHHHHHHHHHHHhCCCcEEEEEcCCC
Q 011608 227 ISKLPPIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLS--ANQMIEVAWGLELSQQRFIWVVRPPM 304 (481)
Q Consensus 227 ~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~--~~~~~~~~~al~~~~~~~i~~~~~~~ 304 (481)
....|..+.+.+.... .+..+.+|++..+++++|||||||+...+ .+.+.+++++++..+.+++|..+...
T Consensus 207 ~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~ 279 (400)
T 4amg_A 207 DRRSPGAWPMRYVPYN-------GGAVLPDWLPPAAGRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGD 279 (400)
T ss_dssp GGCCTTCEECCCCCCC-------CCEECCTTCSCCTTCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTC
T ss_pred cccCCcccCccccccc-------ccccCcccccccCCCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCcc
Confidence 0112223333222211 23344568888888899999999986543 35688899999999999999986543
Q ss_pred CCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeeccc
Q 011608 305 DNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPL 384 (481)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~ 384 (481)
.. ....+|+ |+.+.+|+||.++|+|++ +||||||+||++||+++|||+|++|+
T Consensus 280 ~~----------------~~~~~~~---------~v~~~~~~p~~~lL~~~~--~~v~h~G~~s~~Eal~~GvP~v~~P~ 332 (400)
T 4amg_A 280 LA----------------LLGELPA---------NVRVVEWIPLGALLETCD--AIIHHGGSGTLLTALAAGVPQCVIPH 332 (400)
T ss_dssp CC----------------CCCCCCT---------TEEEECCCCHHHHHTTCS--EEEECCCHHHHHHHHHHTCCEEECCC
T ss_pred cc----------------ccccCCC---------CEEEEeecCHHHHhhhhh--heeccCCccHHHHHHHhCCCEEEecC
Confidence 21 2244565 899999999999999977 89999999999999999999999999
Q ss_pred ccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 011608 385 YAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKK 448 (481)
Q Consensus 385 ~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~ 448 (481)
++||+.||+++ +++|+|+.++. .+++++ +|+++|+|++ ||+||++++++++.
T Consensus 333 ~~dQ~~na~~v-~~~G~g~~l~~----~~~~~~----al~~lL~d~~---~r~~a~~l~~~~~~ 384 (400)
T 4amg_A 333 GSYQDTNRDVL-TGLGIGFDAEA----GSLGAE----QCRRLLDDAG---LREAALRVRQEMSE 384 (400)
T ss_dssp ---CHHHHHHH-HHHTSEEECCT----TTCSHH----HHHHHHHCHH---HHHHHHHHHHHHHT
T ss_pred cccHHHHHHHH-HHCCCEEEcCC----CCchHH----HHHHHHcCHH---HHHHHHHHHHHHHc
Confidence 99999999999 69999999874 556654 6677888887 99999999999543
No 7
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=2.9e-43 Score=354.16 Aligned_cols=388 Identities=18% Similarity=0.204 Sum_probs=253.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCC-C--Ccc
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLD-A--DAS 81 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~--~~~ 81 (481)
++||+++++|+.||++|++.||++|+++ ||+|+|++++.+.+.+.+. +++|++++......... . ..+
T Consensus 12 ~~~Il~~~~~~~GHv~p~l~la~~L~~~-Gh~V~~~~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~ 82 (424)
T 2iya_A 12 PRHISFFNIPGHGHVNPSLGIVQELVAR-GHRVSYAITDEFAAQVKAA--------GATPVVYDSILPKESNPEESWPED 82 (424)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHHHHHT-TCEEEEEECGGGHHHHHHH--------TCEEEECCCCSCCTTCTTCCCCSS
T ss_pred cceEEEEeCCCCcccchHHHHHHHHHHC-CCeEEEEeCHHHHHHHHhC--------CCEEEecCccccccccchhhcchh
Confidence 4799999999999999999999999999 9999999999766554442 67788877531111100 0 111
Q ss_pred HH---HHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhcc
Q 011608 82 IV---IKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEE 158 (481)
Q Consensus 82 ~~---~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (481)
.. ..+........+.+.+++++. +||+||+|.++.|+..+|+++|||++.+++.+....... ..+.... . .
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~l~~~--~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~-~~~~~~~--~-~ 156 (424)
T 2iya_A 83 QESAMGLFLDEAVRVLPQLEDAYADD--RPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFE-EDVPAVQ--D-P 156 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTS--CCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHH-HHSGGGS--C-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--CCCEEEEcCcccHHHHHHHhcCCCEEEEecccccccccc-ccccccc--c-c
Confidence 11 122222334445666666666 999999999888899999999999999987653110000 0000000 0 0
Q ss_pred ccCCCCCccCCCCcccCccccccc--ccCCCchhHHHHHHHh-------hhhcccceEEecChhhhcHHHHHHHHhccCC
Q 011608 159 HYGRKQPLMIPGCRSVRFQDTLEA--FTDPKDQLFDEYLRIG-------LEMVTADGILINTWEDLEPTTLASLRDGISK 229 (481)
Q Consensus 159 ~~~~~~~~~~pg~~~~~~~~l~~~--~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~ 229 (481)
..........|...... ..+... ...........+.+.. ......+.++.++..+++... . .
T Consensus 157 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~l~~~~-----~---~ 227 (424)
T 2iya_A 157 TADRGEEAAAPAGTGDA-EEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKG-----D---T 227 (424)
T ss_dssp CC----------------------HHHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTTTSTTG-----G---G
T ss_pred ccccccccccccccccc-hhhhccchhHHHHHHHHHHHHHHcCCCCCHHHhccCCCcEEEEcchhhCCCc-----c---C
Confidence 00000000000000000 000000 0000000011111110 011135667888888776542 1 1
Q ss_pred CC-CeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCC
Q 011608 230 LP-PIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDV 308 (481)
Q Consensus 230 ~p-~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 308 (481)
+| ++++|||++... .+..+|++..+++++|||+|||+.....+.+.+++++++..+.+++|+++.....
T Consensus 228 ~~~~~~~vGp~~~~~--------~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~-- 297 (424)
T 2iya_A 228 VGDNYTFVGPTYGDR--------SHQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLSVGRFVDP-- 297 (424)
T ss_dssp CCTTEEECCCCCCCC--------GGGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSSEEEEECCTTSCG--
T ss_pred CCCCEEEeCCCCCCc--------ccCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCcEEEEEECCcCCh--
Confidence 33 599999986421 1234677766667899999999986667778899999998889999988543110
Q ss_pred CCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccch
Q 011608 309 SGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQ 388 (481)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ 388 (481)
. ....+|+ |+.+.+|+||.++|+|++ +||||||+||++||+++|||+|++|+..||
T Consensus 298 ------------~-~~~~~~~---------~v~~~~~~~~~~~l~~~d--~~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ 353 (424)
T 2iya_A 298 ------------A-DLGEVPP---------NVEVHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQ 353 (424)
T ss_dssp ------------G-GGCSCCT---------TEEEESSCCHHHHHTTCS--EEEECCCHHHHHHHHHTTCCEEECCCSHHH
T ss_pred ------------H-HhccCCC---------CeEEecCCCHHHHHhhCC--EEEECCchhHHHHHHHcCCCEEEecCccch
Confidence 0 0011232 889999999999999988 899999999999999999999999999999
Q ss_pred hhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHH
Q 011608 389 KMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQ 462 (481)
Q Consensus 389 ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~ 462 (481)
+.||+++ +++|+|+.++. +.+++++|.++|+++|.|++ +|++++++++.++ ..++..+.++.
T Consensus 354 ~~na~~l-~~~g~g~~~~~----~~~~~~~l~~~i~~ll~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~ 415 (424)
T 2iya_A 354 TMNAERI-VELGLGRHIPR----DQVTAEKLREAVLAVASDPG---VAERLAAVRQEIR----EAGGARAAADI 415 (424)
T ss_dssp HHHHHHH-HHTTSEEECCG----GGCCHHHHHHHHHHHHHCHH---HHHHHHHHHHHHH----TSCHHHHHHHH
T ss_pred HHHHHHH-HHCCCEEEcCc----CCCCHHHHHHHHHHHHcCHH---HHHHHHHHHHHHH----hcCcHHHHHHH
Confidence 9999999 69999999874 67899999999999998887 9999999999844 34544444333
No 8
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=1.4e-41 Score=340.69 Aligned_cols=361 Identities=14% Similarity=0.123 Sum_probs=234.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCC-CccHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDA-DASIVI 84 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ 84 (481)
|||++++.|+.||++|+++||++|+++ ||+|+|++++.+.+.+.+ .+++|++++....... .. ......
T Consensus 1 M~Il~~~~~~~GHv~P~l~la~~L~~~-Gh~V~~~~~~~~~~~v~~--------~g~~~~~i~~~~~~~~-~~~~~~~~~ 70 (415)
T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRDL-GADVRMCAPPDCAERLAE--------VGVPHVPVGPSARAPI-QRAKPLTAE 70 (415)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHT-TCEEEEEECGGGHHHHHH--------TTCCEEECCC--------CCSCCCHH
T ss_pred CeEEEEcCCCchhHHHHHHHHHHHHHC-CCeEEEEcCHHHHHHHHH--------cCCeeeeCCCCHHHHh-hcccccchH
Confidence 799999999999999999999999999 999999999975444333 2677888875421110 10 001111
Q ss_pred HHHHHHHHh-hHHHHHHHhhcCCCCcEEEEcC-CCch--HHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhcccc
Q 011608 85 KIIFMMRES-LPALRSSISTLKPRPTALFADL-FGTE--AFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHY 160 (481)
Q Consensus 85 ~~~~~~~~~-~~~~~~~l~~~~~~~D~VI~D~-~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (481)
.+..+.... ...++++++. ..+||+||+|. +..+ +..+|+++|||++.+++++..... .++|....
T Consensus 71 ~~~~~~~~~~~~~~~~l~~~-~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~--~~~p~~~~------- 140 (415)
T 1iir_A 71 DVRRFTTEAIATQFDEIPAA-AEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPS--PYYPPPPL------- 140 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCC--SSSCCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCC--cccCCccC-------
Confidence 222222222 2233333331 34999999998 6677 788999999999998876532100 01111000
Q ss_pred CCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhccc---------------ceEEecChhhhcH-HHHHHHH
Q 011608 161 GRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTA---------------DGILINTWEDLEP-TTLASLR 224 (481)
Q Consensus 161 ~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~~s~~~l~~-~~~~~~~ 224 (481)
++++|+. .....+...+.. ...+..+.......++. ..++.++...+++ .
T Consensus 141 ----~~~~~~~--~~~n~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~~~------ 206 (415)
T 1iir_A 141 ----GEPSTQD--TIDIPAQWERNN--QSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTDHPWVAADPVLAPLQ------ 206 (415)
T ss_dssp --------------CHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCC------
T ss_pred ----Cccccch--HHHHHHHHHHHH--HHHHHHhHHHHHHHHHHcCCCCCCccccccCCCCEEEeeChhhcCCC------
Confidence 0001110 000000000000 00000000001111100 1345555555543 1
Q ss_pred hccCCCCCeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCC
Q 011608 225 DGISKLPPIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPM 304 (481)
Q Consensus 225 ~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 304 (481)
.+.+ ++++|||++..+.. ..+.++.+|++.++ ++|||||||+. ...+..+.+++++++.+.+++|+++...
T Consensus 207 --~~~~-~~~~vG~~~~~~~~---~~~~~~~~~l~~~~--~~v~v~~Gs~~-~~~~~~~~~~~al~~~~~~~v~~~g~~~ 277 (415)
T 1iir_A 207 --PTDL-DAVQTGAWILPDER---PLSPELAAFLDAGP--PPVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWAD 277 (415)
T ss_dssp --CCSS-CCEECCCCCCCCCC---CCCHHHHHHHHTSS--CCEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTT
T ss_pred --cccC-CeEeeCCCccCccc---CCCHHHHHHHhhCC--CeEEEeCCCCC-CcHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 0112 68999999875332 25788999998653 58999999987 5567788899999999999999875432
Q ss_pred CCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeeccc
Q 011608 305 DNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPL 384 (481)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~ 384 (481)
. ....+|+ |+.+.+|+||.++|++++ +||||||+||++||+++|||+|++|+
T Consensus 278 ~-----------------~~~~~~~---------~v~~~~~~~~~~~l~~~d--~~v~~~G~~t~~Ea~~~G~P~i~~p~ 329 (415)
T 1iir_A 278 L-----------------VLPDDGA---------DCFAIGEVNHQVLFGRVA--AVIHHGGAGTTHVAARAGAPQILLPQ 329 (415)
T ss_dssp C-----------------CCSSCGG---------GEEECSSCCHHHHGGGSS--EEEECCCHHHHHHHHHHTCCEEECCC
T ss_pred c-----------------cccCCCC---------CEEEeCcCChHHHHhhCC--EEEeCCChhHHHHHHHcCCCEEECCC
Confidence 1 0112333 788899999999997655 99999999999999999999999999
Q ss_pred ccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 011608 385 YAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSA 446 (481)
Q Consensus 385 ~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~ 446 (481)
.+||+.||+++ +++|+|+.++. +.+++++|.++|+++ .|++ +|++++++++++
T Consensus 330 ~~dQ~~na~~l-~~~g~g~~~~~----~~~~~~~l~~~i~~l-~~~~---~~~~~~~~~~~~ 382 (415)
T 1iir_A 330 MADQPYYAGRV-AELGVGVAHDG----PIPTFDSLSAALATA-LTPE---THARATAVAGTI 382 (415)
T ss_dssp STTHHHHHHHH-HHHTSEEECSS----SSCCHHHHHHHHHHH-TSHH---HHHHHHHHHHHS
T ss_pred CCccHHHHHHH-HHCCCcccCCc----CCCCHHHHHHHHHHH-cCHH---HHHHHHHHHHHH
Confidence 99999999999 79999999874 678999999999999 8876 999999999883
No 9
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=1.1e-40 Score=334.47 Aligned_cols=381 Identities=13% Similarity=0.065 Sum_probs=244.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCC--CccHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDA--DASIV 83 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~ 83 (481)
|||++++.++.||++|+++||++|+++ ||+|+|++++.+.+.+.+ .++.|++++.... +.... .....
T Consensus 1 MrIl~~~~~~~GH~~p~l~la~~L~~~-Gh~V~~~~~~~~~~~v~~--------~g~~~~~~~~~~~-~~~~~~~~~~~~ 70 (416)
T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKAL-GVQTRMCAPPAAEERLAE--------VGVPHVPVGLPQH-MMLQEGMPPPPP 70 (416)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHT-TCEEEEEECGGGHHHHHH--------HTCCEEECSCCGG-GCCCTTSCCCCH
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHC-CCeEEEEeCHHHHHHHHH--------cCCeeeecCCCHH-HHHhhccccchh
Confidence 699999999999999999999999999 999999999865544443 2677888875421 11111 00111
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcC-CCch--HHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhcccc
Q 011608 84 IKIIFMMRESLPALRSSISTLKPRPTALFADL-FGTE--AFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHY 160 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~-~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (481)
..+..+.......+.+.+.+...+||+||+|. +.++ +..+|+.+|||++.+++++..... .++| ...
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~--~~~p--------~~~ 140 (416)
T 1rrv_A 71 EEEQRLAAMTVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLAS--PHLP--------PAY 140 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCC--SSSC--------CCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--cccC--------CCC
Confidence 12222222222222233331134899999996 4556 778999999999998876521100 0011 000
Q ss_pred CCCCCccC-CC-CcccCcccccccccCC-CchhHHHHHHHh---------hhhcccceEEecChhhhcHHHHHHHHhccC
Q 011608 161 GRKQPLMI-PG-CRSVRFQDTLEAFTDP-KDQLFDEYLRIG---------LEMVTADGILINTWEDLEPTTLASLRDGIS 228 (481)
Q Consensus 161 ~~~~~~~~-pg-~~~~~~~~l~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~ 228 (481)
.++. ++ ..+.....+......+ .....+.+.+.. ...... .++.++..++++.. +
T Consensus 141 ----~~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~l~~~~--------~ 207 (416)
T 1rrv_A 141 ----DEPTTPGVTDIRVLWEERAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGE-RPLLAADPVLAPLQ--------P 207 (416)
T ss_dssp ----CSCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCS-SCEECSCTTTSCCC--------S
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCchhhhccCC-CeEEccCccccCCC--------C
Confidence 0001 11 0000000000000000 000000000000 000111 35566666555320 1
Q ss_pred CCCCeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCC-CChHHHHHHHHHHHhCCCcEEEEEcCCCCCC
Q 011608 229 KLPPIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGT-LSANQMIEVAWGLELSQQRFIWVVRPPMDND 307 (481)
Q Consensus 229 ~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 307 (481)
.+ ++++|||++..+.. ..+.++.+|++++ +++|||+|||+.. ...+.+.+++++++..+.+++|+++....
T Consensus 208 ~~-~~~~vG~~~~~~~~---~~~~~~~~~l~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~-- 279 (416)
T 1rrv_A 208 DV-DAVQTGAWLLSDER---PLPPELEAFLAAG--SPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTEL-- 279 (416)
T ss_dssp SC-CCEECCCCCCCCCC---CCCHHHHHHHHSS--SCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTC--
T ss_pred CC-CeeeECCCccCccC---CCCHHHHHHHhcC--CCeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCccc--
Confidence 12 68899999875332 2578899999875 3589999999854 34455788999999999999999864321
Q ss_pred CCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccc
Q 011608 308 VSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAE 387 (481)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~D 387 (481)
....+|+ |+.+.+|+||.++|++++ +||||||+||++||+++|||+|++|+..|
T Consensus 280 ---------------~~~~~~~---------~v~~~~~~~~~~ll~~~d--~~v~~~G~~t~~Ea~~~G~P~i~~p~~~d 333 (416)
T 1rrv_A 280 ---------------VLPDDRD---------DCFAIDEVNFQALFRRVA--AVIHHGSAGTEHVATRAGVPQLVIPRNTD 333 (416)
T ss_dssp ---------------CCSCCCT---------TEEEESSCCHHHHGGGSS--EEEECCCHHHHHHHHHHTCCEEECCCSBT
T ss_pred ---------------cccCCCC---------CEEEeccCChHHHhccCC--EEEecCChhHHHHHHHcCCCEEEccCCCC
Confidence 0012333 788899999999997766 99999999999999999999999999999
Q ss_pred hhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011608 388 QKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQC 467 (481)
Q Consensus 388 Q~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 467 (481)
|+.||+++ +++|+|+.++. +.+++++|.++|+++ .|++ ||+++++++++ +...++. +.++.+++++
T Consensus 334 Q~~na~~l-~~~g~g~~~~~----~~~~~~~l~~~i~~l-~~~~---~~~~~~~~~~~----~~~~~~~-~~~~~i~e~~ 399 (416)
T 1rrv_A 334 QPYFAGRV-AALGIGVAHDG----PTPTFESLSAALTTV-LAPE---TRARAEAVAGM----VLTDGAA-AAADLVLAAV 399 (416)
T ss_dssp HHHHHHHH-HHHTSEEECSS----SCCCHHHHHHHHHHH-TSHH---HHHHHHHHTTT----CCCCHHH-HHHHHHHHHH
T ss_pred cHHHHHHH-HHCCCccCCCC----CCCCHHHHHHHHHHh-hCHH---HHHHHHHHHHH----HhhcCcH-HHHHHHHHHH
Confidence 99999999 69999999874 678999999999999 8877 99999999888 4444554 4443331443
No 10
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=100.00 E-value=1.1e-39 Score=325.65 Aligned_cols=358 Identities=13% Similarity=0.093 Sum_probs=238.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCC--C-CCCCccH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISA--L-LDADASI 82 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~~~~~ 82 (481)
|||+|++.++.||++|+++||++|+++ ||+|+|++++.+.+.+.+. ++.|..++...... . .......
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~-Gh~V~v~~~~~~~~~v~~~--------g~~~~~l~~~~~~~~~~~~~~~~~~ 71 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLREL-GADARMCLPPDYVERCAEV--------GVPMVPVGRAVRAGAREPGELPPGA 71 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHT-TCCEEEEECGGGHHHHHHT--------TCCEEECSSCSSGGGSCTTCCCTTC
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHC-CCeEEEEeCHHHHHHHHHc--------CCceeecCCCHHHHhccccCCHHHH
Confidence 789999999999999999999999999 9999999998766555443 67777776432110 0 0001111
Q ss_pred HHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchH---HHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccc
Q 011608 83 VIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEA---FQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEH 159 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~---~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (481)
...+..........+.+.+ .+||+||+|.....+ ..+|+++|||++.+..++....+ +....
T Consensus 72 ~~~~~~~~~~~~~~l~~~~----~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~-----~~~~~------ 136 (404)
T 3h4t_A 72 AEVVTEVVAEWFDKVPAAI----EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPS-----EQSQA------ 136 (404)
T ss_dssp GGGHHHHHHHHHHHHHHHH----TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGG-----GSCHH------
T ss_pred HHHHHHHHHHHHHHHHHHh----cCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCC-----hhHHH------
Confidence 1112222222223333333 279999998655544 67899999999988765531000 00000
Q ss_pred cCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcc---------------cceEEecChhhhcHHHHHHHH
Q 011608 160 YGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVT---------------ADGILINTWEDLEPTTLASLR 224 (481)
Q Consensus 160 ~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~s~~~l~~~~~~~~~ 224 (481)
...+. ....+..+.+.....+. .+..+.+....+.+.
T Consensus 137 ----------------~~~~~------~~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~l~~~~~~l~p~------ 188 (404)
T 3h4t_A 137 ----------------ERDMY------NQGADRLFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAADPVLSPL------ 188 (404)
T ss_dssp ----------------HHHHH------HHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCC------
T ss_pred ----------------HHHHH------HHHHHHHhHHHHHHHHHHcCCCCCcchhhccccCCeEEeeCcceeCC------
Confidence 00000 00000000000010000 011122222222111
Q ss_pred hccCCCC-CeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCC
Q 011608 225 DGISKLP-PIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPP 303 (481)
Q Consensus 225 ~~~~~~p-~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 303 (481)
++++ +++++|+++..... ..++++.+|++.. +++|||+|||+.. ..+.+..+++++++.+.+++|+.+..
T Consensus 189 ---~~~~~~~~~~G~~~~~~~~---~~~~~l~~~l~~~--~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~~~vv~~~g~~ 259 (404)
T 3h4t_A 189 ---RPTDLGTVQTGAWILPDQR---PLSAELEGFLRAG--SPPVYVGFGSGPA-PAEAARVAIEAVRAQGRRVVLSSGWA 259 (404)
T ss_dssp ---CTTCCSCCBCCCCCCCCCC---CCCHHHHHHHHTS--SCCEEECCTTSCC-CTTHHHHHHHHHHHTTCCEEEECTTT
T ss_pred ---CCCCCCeEEeCccccCCCC---CCCHHHHHHHhcC--CCeEEEECCCCCC-cHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 1122 48889988765432 3678899999853 4589999999876 66778999999999999999998654
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecc
Q 011608 304 MDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWP 383 (481)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P 383 (481)
.. ....+++ |+.+.+|+||.++|++++ +||||||+||++||+++|+|+|++|
T Consensus 260 ~~-----------------~~~~~~~---------~v~~~~~~~~~~ll~~~d--~~v~~gG~~t~~Eal~~GvP~v~~p 311 (404)
T 3h4t_A 260 GL-----------------GRIDEGD---------DCLVVGEVNHQVLFGRVA--AVVHHGGAGTTTAVTRAGAPQVVVP 311 (404)
T ss_dssp TC-----------------CCSSCCT---------TEEEESSCCHHHHGGGSS--EEEECCCHHHHHHHHHHTCCEEECC
T ss_pred cc-----------------ccccCCC---------CEEEecCCCHHHHHhhCc--EEEECCcHHHHHHHHHcCCCEEEcC
Confidence 21 0111233 899999999999998866 9999999999999999999999999
Q ss_pred cccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 011608 384 LYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQV 463 (481)
Q Consensus 384 ~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~ 463 (481)
+.+||+.||+++ ++.|+|+.++. .++++++|.++|+++|+ ++ |+++++++++. +.. .+. ..+.+.
T Consensus 312 ~~~dQ~~na~~~-~~~G~g~~l~~----~~~~~~~l~~ai~~ll~-~~---~~~~~~~~~~~----~~~-~~~-~~~~~~ 376 (404)
T 3h4t_A 312 QKADQPYYAGRV-ADLGVGVAHDG----PTPTVESLSAALATALT-PG---IRARAAAVAGT----IRT-DGT-TVAAKL 376 (404)
T ss_dssp CSTTHHHHHHHH-HHHTSEEECSS----SSCCHHHHHHHHHHHTS-HH---HHHHHHHHHTT----CCC-CHH-HHHHHH
T ss_pred CcccHHHHHHHH-HHCCCEeccCc----CCCCHHHHHHHHHHHhC-HH---HHHHHHHHHHH----Hhh-hHH-HHHHHH
Confidence 999999999999 69999999874 67899999999999997 66 99999999988 555 443 444444
Q ss_pred HHHH
Q 011608 464 AKQC 467 (481)
Q Consensus 464 ~~~~ 467 (481)
++++
T Consensus 377 i~~~ 380 (404)
T 3h4t_A 377 LLEA 380 (404)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 11
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=100.00 E-value=3.9e-38 Score=315.84 Aligned_cols=375 Identities=15% Similarity=0.143 Sum_probs=246.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCC------C
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALL------D 77 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~ 77 (481)
..|||+|+++++.||++|++.||++|.++ ||+|+|++++.+.+.+.+ .++.+..++........ .
T Consensus 19 ~m~rIl~~~~~~~GHv~p~l~La~~L~~~-Gh~V~v~~~~~~~~~~~~--------~G~~~~~~~~~~~~~~~~~~~~~~ 89 (415)
T 3rsc_A 19 HMAHLLIVNVASHGLILPTLTVVTELVRR-GHRVSYVTAGGFAEPVRA--------AGATVVPYQSEIIDADAAEVFGSD 89 (415)
T ss_dssp CCCEEEEECCSCHHHHGGGHHHHHHHHHT-TCEEEEEECGGGHHHHHH--------TTCEEEECCCSTTTCCHHHHHHSS
T ss_pred cCCEEEEEeCCCccccccHHHHHHHHHHC-CCEEEEEeCHHHHHHHHh--------cCCEEEeccccccccccchhhccc
Confidence 35899999999999999999999999999 999999998866655443 26788888743211000 0
Q ss_pred CCccHHHH-HHHHHHHhhHHHHHHHhhcCCCCcEEEEc-CCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhh
Q 011608 78 ADASIVIK-IIFMMRESLPALRSSISTLKPRPTALFAD-LFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRL 155 (481)
Q Consensus 78 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~D~VI~D-~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~ 155 (481)
........ +..........+.+.++++ +||+||+| ...+++..+|+++|||++.+.+...... .++... ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~----~~~~~~-~~ 162 (415)
T 3rsc_A 90 DLGVRPHLMYLRENVSVLRATAEALDGD--VPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNE----HYSFSQ-DM 162 (415)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHSSS--CCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCS----SCCHHH-HH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccC----cccccc-cc
Confidence 00011111 2223333445666777777 99999999 8888888999999999998775331000 000000 00
Q ss_pred hccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhh-------hhccc-ceEEecChhhhcHHHHHHHHhcc
Q 011608 156 QEEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGL-------EMVTA-DGILINTWEDLEPTTLASLRDGI 227 (481)
Q Consensus 156 ~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~l~~s~~~l~~~~~~~~~~~~ 227 (481)
... .... .+. ... ........+..... ..... +..+...-..++.. ..
T Consensus 163 ~~~--------~~~~-~p~-------~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~-- 218 (415)
T 3rsc_A 163 VTL--------AGTI-DPL-------DLP-VFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIA-----GD-- 218 (415)
T ss_dssp HHH--------HTCC-CGG-------GCH-HHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTTSTT-----GG--
T ss_pred ccc--------cccC-Chh-------hHH-HHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcccCCC-----cc--
Confidence 000 0000 000 000 00000011111000 00001 22333332222211 00
Q ss_pred CCCC-CeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCC
Q 011608 228 SKLP-PIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDN 306 (481)
Q Consensus 228 ~~~p-~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 306 (481)
.+| ++.++||++... .+..+|....+++++|||++||......+.+..++++++..+.+++|.++.....
T Consensus 219 -~~~~~~~~vGp~~~~~--------~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~ 289 (415)
T 3rsc_A 219 -TFDDRFVFVGPCFDDR--------RFLGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQPWHVVMTLGGQVDP 289 (415)
T ss_dssp -GCCTTEEECCCCCCCC--------GGGCCCCCCSSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSSCEEEEECTTTSCG
T ss_pred -cCCCceEEeCCCCCCc--------ccCcCccccCCCCCEEEEECCCCCCChHHHHHHHHHHHhcCCcEEEEEeCCCCCh
Confidence 123 388999987532 1233465545567799999999977777778999999999889999987643110
Q ss_pred CCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeeccccc
Q 011608 307 DVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYA 386 (481)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~ 386 (481)
+ ....+|+ |+.+.+|+|+.++|++++ +||||||+||++||+++|+|+|++|+..
T Consensus 290 --------------~-~l~~~~~---------~v~~~~~~~~~~ll~~ad--~~v~~~G~~t~~Ea~~~G~P~v~~p~~~ 343 (415)
T 3rsc_A 290 --------------A-ALGDLPP---------NVEAHRWVPHVKVLEQAT--VCVTHGGMGTLMEALYWGRPLVVVPQSF 343 (415)
T ss_dssp --------------G-GGCCCCT---------TEEEESCCCHHHHHHHEE--EEEESCCHHHHHHHHHTTCCEEECCCSG
T ss_pred --------------H-HhcCCCC---------cEEEEecCCHHHHHhhCC--EEEECCcHHHHHHHHHhCCCEEEeCCcc
Confidence 0 0112233 888999999999999988 8999999999999999999999999999
Q ss_pred chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 011608 387 EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAK 465 (481)
Q Consensus 387 DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 465 (481)
||+.||+++ ++.|+|+.++. +++++++|.++|+++|.|++ ++++++++++.+ ..+++..+.++.+.+
T Consensus 344 ~q~~~a~~l-~~~g~g~~~~~----~~~~~~~l~~~i~~ll~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~i~~ 410 (415)
T 3rsc_A 344 DVQPMARRV-DQLGLGAVLPG----EKADGDTLLAAVGAVAADPA---LLARVEAMRGHV----RRAGGAARAADAVEA 410 (415)
T ss_dssp GGHHHHHHH-HHHTCEEECCG----GGCCHHHHHHHHHHHHTCHH---HHHHHHHHHHHH----HHSCHHHHHHHHHHH
T ss_pred hHHHHHHHH-HHcCCEEEccc----CCCCHHHHHHHHHHHHcCHH---HHHHHHHHHHHH----HhcCHHHHHHHHHHH
Confidence 999999999 69999999874 67899999999999999987 999999999984 445555554444433
No 12
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=100.00 E-value=1.5e-37 Score=313.87 Aligned_cols=370 Identities=13% Similarity=0.107 Sum_probs=232.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCC-CCC-------
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDI-SAL------- 75 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~------- 75 (481)
..|||++++.++.||++|+++||++|+++ ||+|+|++++.+.+.+.+ .++.|++++.... .+.
T Consensus 19 ~~mrIl~~~~~~~GHv~p~l~la~~L~~~-GheV~~~~~~~~~~~v~~--------~G~~~~~i~~~~~~~~~~~~~~~~ 89 (441)
T 2yjn_A 19 SHMRVVFSSMASKSHLFGLVPLAWAFRAA-GHEVRVVASPALTEDITA--------AGLTAVPVGTDVDLVDFMTHAGHD 89 (441)
T ss_dssp CCCEEEEECCSCHHHHTTTHHHHHHHHHT-TCEEEEEECGGGHHHHHT--------TTCCEEECSCCCCHHHHHHHTTHH
T ss_pred CccEEEEEcCCCcchHhHHHHHHHHHHHC-CCeEEEEeCchhHHHHHh--------CCCceeecCCccchHHHhhhhhcc
Confidence 34899999999999999999999999999 999999999865444332 3678888875320 000
Q ss_pred -------CC-----CCccHHH---HHHHHH----H-----H-hhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCc
Q 011608 76 -------LD-----ADASIVI---KIIFMM----R-----E-SLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEML 130 (481)
Q Consensus 76 -------~~-----~~~~~~~---~~~~~~----~-----~-~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP 130 (481)
.. ....... ...... . . ....+.++++++ +||+||+|.++.++..+|+.+|||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~pDlVv~d~~~~~~~~aA~~lgiP 167 (441)
T 2yjn_A 90 IIDYVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKW--RPDLVIWEPLTFAAPIAAAVTGTP 167 (441)
T ss_dssp HHHHHTTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHH--CCSEEEECTTCTHHHHHHHHHTCC
T ss_pred cccccccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhc--CCCEEEecCcchhHHHHHHHcCCC
Confidence 00 0000011 111111 1 1 344555666777 999999999888888999999999
Q ss_pred eEEEechhHHHHHHHhhcccchhhhhccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcc-------
Q 011608 131 KYVYIASNAWFLAATIYFPTIDKRLQEEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVT------- 203 (481)
Q Consensus 131 ~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 203 (481)
++.+...+.........++.... ..|.. .........+.+.......
T Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~~~~~ 221 (441)
T 2yjn_A 168 HARLLWGPDITTRARQNFLGLLP-------------DQPEE-------------HREDPLAEWLTWTLEKYGGPAFDEEV 221 (441)
T ss_dssp EEEECSSCCHHHHHHHHHHHHGG-------------GSCTT-------------TCCCHHHHHHHHHHHHTTCCCCCGGG
T ss_pred EEEEecCCCcchhhhhhhhhhcc-------------ccccc-------------cccchHHHHHHHHHHHcCCCCCCccc
Confidence 99986543221111000000000 00000 0001111111111111100
Q ss_pred --cceEEecChhhhcHHHHHHHHhccCCCCCeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCC---C
Q 011608 204 --ADGILINTWEDLEPTTLASLRDGISKLPPIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTL---S 278 (481)
Q Consensus 204 --~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~---~ 278 (481)
.+..+.++...++.+ .++|. ..+++.... .+.++.+|++..+++++|||++||+... .
T Consensus 222 ~~~~~~l~~~~~~~~~~---------~~~~~-~~~~~~~~~-------~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~ 284 (441)
T 2yjn_A 222 VVGQWTIDPAPAAIRLD---------TGLKT-VGMRYVDYN-------GPSVVPEWLHDEPERRRVCLTLGISSRENSIG 284 (441)
T ss_dssp TSCSSEEECSCGGGSCC---------CCCCE-EECCCCCCC-------SSCCCCGGGSSCCSSCEEEEEC----------
T ss_pred cCCCeEEEecCccccCC---------CCCCC-CceeeeCCC-------CCcccchHhhcCCCCCEEEEECCCCcccccCh
Confidence 111222222222110 01111 112211100 1234667998666677999999998653 3
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCC
Q 011608 279 ANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVG 358 (481)
Q Consensus 279 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~ 358 (481)
.+.+..++++++..+.+++|+.+..... ....+|+ |+.+.+|+||.++|++++
T Consensus 285 ~~~~~~~~~al~~~~~~~v~~~g~~~~~----------------~l~~~~~---------~v~~~~~~~~~~ll~~ad-- 337 (441)
T 2yjn_A 285 QVSIEELLGAVGDVDAEIIATFDAQQLE----------------GVANIPD---------NVRTVGFVPMHALLPTCA-- 337 (441)
T ss_dssp CCSTTTTHHHHHTSSSEEEECCCTTTTS----------------SCSSCCS---------SEEECCSCCHHHHGGGCS--
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCcchh----------------hhccCCC---------CEEEecCCCHHHHHhhCC--
Confidence 4557788999998999999987643210 0112333 889999999999998766
Q ss_pred ceeeecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHH
Q 011608 359 GFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSR 438 (481)
Q Consensus 359 ~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~ 438 (481)
+||||||+||++||+++|||+|++|+..||+.||+++ ++.|+|+.++. +.+++++|.++|+++|+|++ ++++
T Consensus 338 ~~V~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l-~~~g~g~~~~~----~~~~~~~l~~~i~~ll~~~~---~~~~ 409 (441)
T 2yjn_A 338 ATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRT-QEFGAGIALPV----PELTPDQLRESVKRVLDDPA---HRAG 409 (441)
T ss_dssp EEEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHH-HHHTSEEECCT----TTCCHHHHHHHHHHHHHCHH---HHHH
T ss_pred EEEECCCHHHHHHHHHhCCCEEEeCCcccHHHHHHHH-HHcCCEEEccc----ccCCHHHHHHHHHHHhcCHH---HHHH
Confidence 9999999999999999999999999999999999999 69999999874 67899999999999999887 9999
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011608 439 VKELKHSAKKASTKGGSSYNALSQVAKQC 467 (481)
Q Consensus 439 a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 467 (481)
++++++.+ ...++..+. .+.++++
T Consensus 410 ~~~~~~~~----~~~~~~~~~-~~~i~~~ 433 (441)
T 2yjn_A 410 AARMRDDM----LAEPSPAEV-VGICEEL 433 (441)
T ss_dssp HHHHHHHH----HTSCCHHHH-HHHHHHH
T ss_pred HHHHHHHH----HcCCCHHHH-HHHHHHH
Confidence 99999984 444554444 4444443
No 13
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=100.00 E-value=4.8e-37 Score=306.43 Aligned_cols=371 Identities=16% Similarity=0.183 Sum_probs=242.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCC---CCCccH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALL---DADASI 82 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~ 82 (481)
+||+++++++.||++|++.||++|+++ ||+|+|++++.+.+.+.+ .++.+..++........ ....+.
T Consensus 5 ~~il~~~~~~~Ghv~~~~~La~~L~~~-GheV~v~~~~~~~~~~~~--------~G~~~~~~~~~~~~~~~~~~~~~~~~ 75 (402)
T 3ia7_A 5 RHILFANVQGHGHVYPSLGLVSELARR-GHRITYVTTPLFADEVKA--------AGAEVVLYKSEFDTFHVPEVVKQEDA 75 (402)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHHHH--------TTCEEEECCCGGGTSSSSSSSCCTTH
T ss_pred CEEEEEeCCCCcccccHHHHHHHHHhC-CCEEEEEcCHHHHHHHHH--------cCCEEEecccccccccccccccccch
Confidence 499999999999999999999999999 999999998755554433 26778877642111000 011122
Q ss_pred HHH----HHHHHHHhhHHHHHHHhhcCCCCcEEEEc-CCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhc
Q 011608 83 VIK----IIFMMRESLPALRSSISTLKPRPTALFAD-LFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQE 157 (481)
Q Consensus 83 ~~~----~~~~~~~~~~~~~~~l~~~~~~~D~VI~D-~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 157 (481)
... +..........+.+.++++ +||+||+| .+..++..+|+++|||++.+.+...... .++... ....
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~l~~~--~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~----~~~~~~-~~~~ 148 (402)
T 3ia7_A 76 ETQLHLVYVRENVAILRAAEEALGDN--PPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANE----HYSLFK-ELWK 148 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC--CCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBT----TBCHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--CCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCc----cccccc-cccc
Confidence 222 2222333445666777777 99999999 8888888999999999998764321000 000000 0000
Q ss_pred cccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhh----------hccc-ceEEecChhhhcHHHHHHHHhc
Q 011608 158 EHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLE----------MVTA-DGILINTWEDLEPTTLASLRDG 226 (481)
Q Consensus 158 ~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~l~~s~~~l~~~~~~~~~~~ 226 (481)
. .....+. ........+.+.... .... +..+...-.+++.. ...
T Consensus 149 ~---------~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~ 203 (402)
T 3ia7_A 149 S---------NGQRHPA-----------DVEAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPF-----AET 203 (402)
T ss_dssp H---------HTCCCGG-----------GSHHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTT-----GGG
T ss_pred c---------ccccChh-----------hHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhCCc-----ccc
Confidence 0 0000000 000000000000000 0001 22333332233211 001
Q ss_pred cCCCC-CeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 011608 227 ISKLP-PIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMD 305 (481)
Q Consensus 227 ~~~~p-~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 305 (481)
++ ++.++||...... +..+|+...+++++||+++||......+.+..++++++..+.+++|..+....
T Consensus 204 ---~~~~~~~vGp~~~~~~--------~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 272 (402)
T 3ia7_A 204 ---FDERFAFVGPTLTGRD--------GQPGWQPPRPDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLD 272 (402)
T ss_dssp ---CCTTEEECCCCCCC------------CCCCCSSTTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSC
T ss_pred ---CCCCeEEeCCCCCCcc--------cCCCCcccCCCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCC
Confidence 23 3889999875321 22335544456779999999997777777899999999988888888754311
Q ss_pred CCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeeccc-
Q 011608 306 NDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPL- 384 (481)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~- 384 (481)
. . ....++ .|+.+.+|+|+.++|++++ +||||||+||++||+++|+|+|++|.
T Consensus 273 ~--------------~-~~~~~~---------~~v~~~~~~~~~~ll~~ad--~~v~~~G~~t~~Ea~~~G~P~v~~p~~ 326 (402)
T 3ia7_A 273 P--------------A-VLGPLP---------PNVEAHQWIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHF 326 (402)
T ss_dssp G--------------G-GGCSCC---------TTEEEESCCCHHHHHTTEE--EEEECCCHHHHHHHHHTTCCEEECGGG
T ss_pred h--------------h-hhCCCC---------CcEEEecCCCHHHHHhhCC--EEEECCCHHHHHHHHHhCCCEEEeCCC
Confidence 0 0 001122 3889999999999999988 89999999999999999999999999
Q ss_pred ccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 011608 385 YAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVA 464 (481)
Q Consensus 385 ~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 464 (481)
..||+.|+.++ ++.|+|+.++. ++++++.|.++|+++|.|++ +++++++++++ +..+++..+.++.+.
T Consensus 327 ~~~q~~~a~~~-~~~g~g~~~~~----~~~~~~~l~~~~~~ll~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~i~ 394 (402)
T 3ia7_A 327 ATEAAPSAERV-IELGLGSVLRP----DQLEPASIREAVERLAADSA---VRERVRRMQRD----ILSSGGPARAADEVE 394 (402)
T ss_dssp CGGGHHHHHHH-HHTTSEEECCG----GGCSHHHHHHHHHHHHHCHH---HHHHHHHHHHH----HHTSCHHHHHHHHHH
T ss_pred cccHHHHHHHH-HHcCCEEEccC----CCCCHHHHHHHHHHHHcCHH---HHHHHHHHHHH----HhhCChHHHHHHHHH
Confidence 99999999999 69999999874 67899999999999999887 99999999988 444555555444444
Q ss_pred HH
Q 011608 465 KQ 466 (481)
Q Consensus 465 ~~ 466 (481)
+.
T Consensus 395 ~~ 396 (402)
T 3ia7_A 395 AY 396 (402)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 14
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=100.00 E-value=1.9e-36 Score=300.40 Aligned_cols=351 Identities=15% Similarity=0.121 Sum_probs=238.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCC-----------
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISA----------- 74 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------- 74 (481)
|||++++.++.||++|+++|+++|+++ ||+|++++++...+.+.. .++.++.++.....+
T Consensus 1 MrIl~~~~~~~Gh~~p~~~la~~L~~~-Gh~V~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~ 71 (384)
T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARNA-GHQVVMAANQDMGPVVTG--------VGLPAVATTDLPIRHFITTDREGRPE 71 (384)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHT-TCEEEEEECGGGHHHHHH--------TTCCEEESCSSCHHHHHHBCTTSCBC
T ss_pred CEEEEEeCCccchHhHHHHHHHHHHHC-CCEEEEEeCHHHHHHHHh--------CCCEEEEeCCcchHHHHhhhcccCcc
Confidence 699999999999999999999999999 999999998854433322 256777776432100
Q ss_pred CCCCCccHHHHH-----HHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcc
Q 011608 75 LLDADASIVIKI-----IFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFP 149 (481)
Q Consensus 75 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p 149 (481)
...........+ ..........+.+.+++. +||+||+|.+..++..+|+.+|||++.+...+. .
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~--------~- 140 (384)
T 2p6p_A 72 AIPSDPVAQARFTGRWFARMAASSLPRMLDFSRAW--RPDLIVGGTMSYVAPLLALHLGVPHARQTWDAV--------D- 140 (384)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEEETTCTHHHHHHHHHTCCEEEECCSSC--------C-
T ss_pred ccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CCcEEEECcchhhHHHHHHhcCCCEEEeccCCc--------c-
Confidence 000111111111 112233455666777777 999999998888888899999999998754220 0
Q ss_pred cchhhhhccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhh--hcccceEEecChhhhcHHHHHHHHhcc
Q 011608 150 TIDKRLQEEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLE--MVTADGILINTWEDLEPTTLASLRDGI 227 (481)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~s~~~l~~~~~~~~~~~~ 227 (481)
..+. ...+ ....+.+...... ....+.++.++...++...
T Consensus 141 ------------------~~~~--------~~~~----~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~-------- 182 (384)
T 2p6p_A 141 ------------------ADGI--------HPGA----DAELRPELSELGLERLPAPDLFIDICPPSLRPAN-------- 182 (384)
T ss_dssp ------------------CTTT--------HHHH----HHHTHHHHHHTTCSSCCCCSEEEECSCGGGSCTT--------
T ss_pred ------------------cchh--------hHHH----HHHHHHHHHHcCCCCCCCCCeEEEECCHHHCCCC--------
Confidence 0000 0000 0001111111100 0113456667666554320
Q ss_pred CCCC--CeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCC-----ChHHHHHHHHHHHhCCCcEEEEE
Q 011608 228 SKLP--PIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTL-----SANQMIEVAWGLELSQQRFIWVV 300 (481)
Q Consensus 228 ~~~p--~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~-----~~~~~~~~~~al~~~~~~~i~~~ 300 (481)
+++ ++.+++. . .+.++.+|++..+++++|||++||+... +.+.+..+++++++.+.+++|+.
T Consensus 183 -~~~~~~~~~~~~-~---------~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 251 (384)
T 2p6p_A 183 -AAPARMMRHVAT-S---------RQCPLEPWMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAA 251 (384)
T ss_dssp -SCCCEECCCCCC-C---------CCCBCCHHHHCCCSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTTTCEEEEEC
T ss_pred -CCCCCceEecCC-C---------CCCCCCchhhcCCCCCEEEEECCCCCccccccccHHHHHHHHHHHhcCCcEEEEEe
Confidence 011 2334421 0 1234567887655667999999998764 45678899999999999999987
Q ss_pred cCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCccee
Q 011608 301 RPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLI 380 (481)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v 380 (481)
+.+. .+.+. .. .+|+.+ +|+||.++|++++ +||||||+||++||+++|+|+|
T Consensus 252 g~~~-----------------------~~~l~-~~-~~~v~~-~~~~~~~~l~~~d--~~v~~~G~~t~~Ea~~~G~P~v 303 (384)
T 2p6p_A 252 PDTV-----------------------AEALR-AE-VPQARV-GWTPLDVVAPTCD--LLVHHAGGVSTLTGLSAGVPQL 303 (384)
T ss_dssp CHHH-----------------------HHHHH-HH-CTTSEE-ECCCHHHHGGGCS--EEEECSCTTHHHHHHHTTCCEE
T ss_pred CCCC-----------------------HHhhC-CC-CCceEE-cCCCHHHHHhhCC--EEEeCCcHHHHHHHHHhCCCEE
Confidence 4210 01111 12 348899 9999999998866 9999999999999999999999
Q ss_pred ecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHH
Q 011608 381 VWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNAL 460 (481)
Q Consensus 381 ~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~ 460 (481)
++|..+||+.||.++ ++.|+|+.++. +.+++++|.++|+++|.|++ +|++++++++.+ ...++..+.+
T Consensus 304 ~~p~~~dq~~~a~~~-~~~g~g~~~~~----~~~~~~~l~~~i~~ll~~~~---~~~~~~~~~~~~----~~~~~~~~~~ 371 (384)
T 2p6p_A 304 LIPKGSVLEAPARRV-ADYGAAIALLP----GEDSTEAIADSCQELQAKDT---YARRAQDLSREI----SGMPLPATVV 371 (384)
T ss_dssp ECCCSHHHHHHHHHH-HHHTSEEECCT----TCCCHHHHHHHHHHHHHCHH---HHHHHHHHHHHH----HTSCCHHHHH
T ss_pred EccCcccchHHHHHH-HHCCCeEecCc----CCCCHHHHHHHHHHHHcCHH---HHHHHHHHHHHH----HhCCCHHHHH
Confidence 999999999999999 69999999874 67899999999999999887 999999999994 4455554544
Q ss_pred HHHHH
Q 011608 461 SQVAK 465 (481)
Q Consensus 461 ~~~~~ 465 (481)
+.+..
T Consensus 372 ~~i~~ 376 (384)
T 2p6p_A 372 TALEQ 376 (384)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 15
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=5.5e-36 Score=301.63 Aligned_cols=366 Identities=19% Similarity=0.211 Sum_probs=236.5
Q ss_pred CCCC--CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCC
Q 011608 1 MQTT--KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDA 78 (481)
Q Consensus 1 m~~~--~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 78 (481)
|+.. .|||++++.++.||++|++.|+++|.++ ||+|++++++...+.+.+ .++.+++++..........
T Consensus 1 M~~~m~m~kIl~~~~~~~Gh~~p~~~la~~L~~~-G~~V~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~ 71 (430)
T 2iyf_A 1 MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVAR-GHRVTYAIPPVFADKVAA--------TGPRPVLYHSTLPGPDADP 71 (430)
T ss_dssp -------CEEEEECCSCHHHHGGGHHHHHHHHHT-TCEEEEEECGGGHHHHHT--------TSCEEEECCCCSCCTTSCG
T ss_pred CCCccccceEEEEeCCCCccccchHHHHHHHHHC-CCeEEEEeCHHHHHHHHh--------CCCEEEEcCCcCccccccc
Confidence 4443 3799999999999999999999999999 999999999865433222 3678888875311111000
Q ss_pred ---CccHHHH---HHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccch
Q 011608 79 ---DASIVIK---IIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTID 152 (481)
Q Consensus 79 ---~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~ 152 (481)
..+.... +..........+.+++++. +||+||+|.+.+++..+|+.+|||++.+++........ ...+ .
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~-~~~~--~ 146 (430)
T 2iyf_A 72 EAWGSTLLDNVEPFLNDAIQALPQLADAYADD--IPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGY-EEEV--A 146 (430)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHHHHHHTTS--CCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTH-HHHT--H
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhhcc--CCCEEEECCccHHHHHHHHHcCCCEEEEeccccccccc-cccc--c
Confidence 0111111 1222334456667777777 99999999887788899999999999987643200000 0000 0
Q ss_pred hhhhccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHh-------hhhcccceEEecChhhhcHHHHHHHHh
Q 011608 153 KRLQEEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIG-------LEMVTADGILINTWEDLEPTTLASLRD 225 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~s~~~l~~~~~~~~~~ 225 (481)
....... ...++.. .+. .....+.... ......+.++.++...++... .
T Consensus 147 ~~~~~~~------~~~~~~~---------~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~ 202 (430)
T 2iyf_A 147 EPMWREP------RQTERGR---------AYY----ARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHA-----D 202 (430)
T ss_dssp HHHHHHH------HHSHHHH---------HHH----HHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTG-----G
T ss_pred cchhhhh------ccchHHH---------HHH----HHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCc-----c
Confidence 0000000 0000000 000 0000011000 011134667778777766431 1
Q ss_pred ccCCCCC-eeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC-CCcEEEEEcCC
Q 011608 226 GISKLPP-IYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS-QQRFIWVVRPP 303 (481)
Q Consensus 226 ~~~~~p~-~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~ 303 (481)
.. .++ +++|||.+.... +..+|.+..+++++||+++||+.....+.+..++++++.. +.+++|.++..
T Consensus 203 ~~--~~~~v~~vG~~~~~~~--------~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~ 272 (430)
T 2iyf_A 203 RV--DEDVYTFVGACQGDRA--------EEGGWQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRK 272 (430)
T ss_dssp GS--CTTTEEECCCCC-------------CCCCCCCTTCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC--
T ss_pred cC--CCccEEEeCCcCCCCC--------CCCCCccccCCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 11 135 899998664211 1124655445677999999998755566788899999886 78888887543
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecc
Q 011608 304 MDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWP 383 (481)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P 383 (481)
... . ....++ .|+.+.+|+||.++|++++ +||||||+||++||+++|+|+|++|
T Consensus 273 ~~~--------------~-~l~~~~---------~~v~~~~~~~~~~~l~~ad--~~v~~~G~~t~~Ea~~~G~P~i~~p 326 (430)
T 2iyf_A 273 VTP--------------A-ELGELP---------DNVEVHDWVPQLAILRQAD--LFVTHAGAGGSQEGLATATPMIAVP 326 (430)
T ss_dssp -CG--------------G-GGCSCC---------TTEEEESSCCHHHHHTTCS--EEEECCCHHHHHHHHHTTCCEEECC
T ss_pred CCh--------------H-HhccCC---------CCeEEEecCCHHHHhhccC--EEEECCCccHHHHHHHhCCCEEECC
Confidence 110 0 001122 3788999999999999988 8999999999999999999999999
Q ss_pred cccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 011608 384 LYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKK 448 (481)
Q Consensus 384 ~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~ 448 (481)
..+||+.|++++ ++.|+|+.++. +.++.++|.++|.++|.|++ ++++++++++.+..
T Consensus 327 ~~~~q~~~a~~~-~~~g~g~~~~~----~~~~~~~l~~~i~~ll~~~~---~~~~~~~~~~~~~~ 383 (430)
T 2iyf_A 327 QAVDQFGNADML-QGLGVARKLAT----EEATADLLRETALALVDDPE---VARRLRRIQAEMAQ 383 (430)
T ss_dssp CSHHHHHHHHHH-HHTTSEEECCC----C-CCHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHH
T ss_pred CccchHHHHHHH-HHcCCEEEcCC----CCCCHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHh
Confidence 999999999999 69999999874 67899999999999998877 89999888888543
No 16
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=100.00 E-value=1.4e-34 Score=288.33 Aligned_cols=353 Identities=13% Similarity=0.095 Sum_probs=218.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCC-----------
Q 011608 3 TTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVD----------- 71 (481)
Q Consensus 3 ~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------- 71 (481)
..+|||+|++.++.||++|++.|+++|.++ ||+|++++++.+.+.+.+. ++.+..++...
T Consensus 13 ~~~MrIl~~~~~~~gh~~~~~~La~~L~~~-GheV~v~~~~~~~~~~~~~--------G~~~~~~~~~~~~~~~~~~~~~ 83 (398)
T 4fzr_A 13 GSHMRILVIAGCSEGFVMPLVPLSWALRAA-GHEVLVAASENMGPTVTGA--------GLPFAPTCPSLDMPEVLSWDRE 83 (398)
T ss_dssp --CCEEEEECCSSHHHHGGGHHHHHHHHHT-TCEEEEEEEGGGHHHHHHT--------TCCEEEEESSCCHHHHHSBCTT
T ss_pred CCceEEEEEcCCCcchHHHHHHHHHHHHHC-CCEEEEEcCHHHHHHHHhC--------CCeeEecCCccchHhhhhhhcc
Confidence 346999999999999999999999999999 9999999987655544432 56666665310
Q ss_pred -CCCCCCCC-ccHHH----HHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHHHH
Q 011608 72 -ISALLDAD-ASIVI----KIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLAAT 145 (481)
Q Consensus 72 -~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~ 145 (481)
....++.. .+... .+..........+.++++++ +||+|++|...+++..+|+.+|||++.+...........
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~ 161 (398)
T 4fzr_A 84 GNRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERW--KPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELIK 161 (398)
T ss_dssp SCBCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHHHH
T ss_pred CcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEECccccHHHHHHHhhCCCEEEeccCCCCchhhh
Confidence 00000101 11111 12223334456677788888 999999998888888999999999998665321000000
Q ss_pred hhcccchhhhhccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhh--hhcccceEEecChhhhcHHHHHHH
Q 011608 146 IYFPTIDKRLQEEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGL--EMVTADGILINTWEDLEPTTLASL 223 (481)
Q Consensus 146 ~~~p~~~~~~~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~s~~~l~~~~~~~~ 223 (481)
+.... .......... .....+..+......+....
T Consensus 162 ---~~~~~------------------------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 198 (398)
T 4fzr_A 162 ---SAGVG------------------------------------ELAPELAELGLTDFPDPLLSIDVCPPSMEAQP---- 198 (398)
T ss_dssp ---HHHHH------------------------------------HTHHHHHTTTCSSCCCCSEEEECSCGGGC-------
T ss_pred ---HHHHH------------------------------------HHHHHHHHcCCCCCCCCCeEEEeCChhhCCCC----
Confidence 00000 0000000000 00011112222222221110
Q ss_pred HhccCCCCCeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCC--------ChHHHHHHHHHHHhCCCc
Q 011608 224 RDGISKLPPIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTL--------SANQMIEVAWGLELSQQR 295 (481)
Q Consensus 224 ~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~--------~~~~~~~~~~al~~~~~~ 295 (481)
.. ... ++.++++.. .+.++.+|+...+++++|||++||+... ..+.+..++++++..+.+
T Consensus 199 -~~-~~~-~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 266 (398)
T 4fzr_A 199 -KP-GTT-KMRYVPYNG---------RNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFE 266 (398)
T ss_dssp --C-CCE-ECCCCCCCC---------SSCCCCHHHHSCCSSCEEECC----------------CCSHHHHHHHGGGGTCE
T ss_pred -CC-CCC-CeeeeCCCC---------CCCCCchhhhcCCCCCEEEEEccCcccccccccccchHHHHHHHHHHHHhCCCE
Confidence 00 000 122222110 1234456776555667999999998543 345588899999999999
Q ss_pred EEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHc
Q 011608 296 FIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVN 375 (481)
Q Consensus 296 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~ 375 (481)
++|+.+..... ....+|+ |+.+.+|+|+.++|++++ +||||||.||++||+++
T Consensus 267 ~v~~~~~~~~~----------------~l~~~~~---------~v~~~~~~~~~~ll~~ad--~~v~~gG~~t~~Ea~~~ 319 (398)
T 4fzr_A 267 VVVAVSDKLAQ----------------TLQPLPE---------GVLAAGQFPLSAIMPACD--VVVHHGGHGTTLTCLSE 319 (398)
T ss_dssp EEECCCC------------------------CCT---------TEEEESCCCHHHHGGGCS--EEEECCCHHHHHHHHHT
T ss_pred EEEEeCCcchh----------------hhccCCC---------cEEEeCcCCHHHHHhhCC--EEEecCCHHHHHHHHHh
Confidence 99987543210 0112233 899999999999999977 99999999999999999
Q ss_pred CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCC
Q 011608 376 GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGS 455 (481)
Q Consensus 376 GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~ 455 (481)
|+|+|++|...||+.|+.++ ++.|+|+.++. +++++++|.++|+++|.|++ +|+++++++++ +....+
T Consensus 320 G~P~v~~p~~~~q~~~a~~~-~~~g~g~~~~~----~~~~~~~l~~ai~~ll~~~~---~~~~~~~~~~~----~~~~~~ 387 (398)
T 4fzr_A 320 GVPQVSVPVIAEVWDSARLL-HAAGAGVEVPW----EQAGVESVLAACARIRDDSS---YVGNARRLAAE----MATLPT 387 (398)
T ss_dssp TCCEEECCCSGGGHHHHHHH-HHTTSEEECC-----------CHHHHHHHHHHCTH---HHHHHHHHHHH----HTTSCC
T ss_pred CCCEEecCCchhHHHHHHHH-HHcCCEEecCc----ccCCHHHHHHHHHHHHhCHH---HHHHHHHHHHH----HHcCCC
Confidence 99999999999999999999 69999999875 67899999999999999988 99999999988 555555
Q ss_pred hHHHH
Q 011608 456 SYNAL 460 (481)
Q Consensus 456 ~~~~~ 460 (481)
..+.+
T Consensus 388 ~~~~~ 392 (398)
T 4fzr_A 388 PADIV 392 (398)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 17
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=100.00 E-value=4.5e-34 Score=284.66 Aligned_cols=347 Identities=14% Similarity=0.165 Sum_probs=229.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCC-C---------
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDI-S--------- 73 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~--------- 73 (481)
..|||+|++.++.||++|++.|+++|.++ ||+|+++++ .+.+.+.+ .++.++.++.... .
T Consensus 19 ~~MrIl~~~~~~~Ghv~~~~~La~~L~~~-GheV~v~~~-~~~~~~~~--------~G~~~~~~~~~~~~~~~~~~~~~~ 88 (398)
T 3oti_A 19 RHMRVLFVSSPGIGHLFPLIQLAWGFRTA-GHDVLIAVA-EHADRAAA--------AGLEVVDVAPDYSAVKVFEQVAKD 88 (398)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHT-TCEEEEEES-SCHHHHHT--------TTCEEEESSTTCCHHHHHHHHHHH
T ss_pred hcCEEEEEcCCCcchHhHHHHHHHHHHHC-CCEEEEecc-chHHHHHh--------CCCeeEecCCccCHHHHhhhcccC
Confidence 45999999999999999999999999999 999999999 65555433 3788888874210 0
Q ss_pred ----------CCCCCCccHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHHH
Q 011608 74 ----------ALLDADASIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFLA 143 (481)
Q Consensus 74 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~ 143 (481)
............+..........+.++++++ +||+||+|...+++..+|+.+|||++.........
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~~-- 164 (398)
T 3oti_A 89 NPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDY--RPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRT-- 164 (398)
T ss_dssp CHHHHHTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHHH--CCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCCC--
T ss_pred CccccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEECchhhHHHHHHHHcCCCEEEEeccCCCc--
Confidence 0000111222223344445567888889998 99999999888888899999999998765432000
Q ss_pred HHhhcccchhhhhccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhh-hcccceEEecChhhhcHHHHHH
Q 011608 144 ATIYFPTIDKRLQEEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLE-MVTADGILINTWEDLEPTTLAS 222 (481)
Q Consensus 144 ~~~~~p~~~~~~~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~l~~~~~~~ 222 (481)
. .. ........ ......... ....+..+...-..+...
T Consensus 165 -----~--------------------~~--------~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 203 (398)
T 3oti_A 165 -----R--------------------GM--------HRSIASFL----TDLMDKHQVSLPEPVATIESFPPSLLLE---- 203 (398)
T ss_dssp -----T--------------------TH--------HHHHHTTC----HHHHHHTTCCCCCCSEEECSSCGGGGTT----
T ss_pred -----c--------------------ch--------hhHHHHHH----HHHHHHcCCCCCCCCeEEEeCCHHHCCC----
Confidence 0 00 00000000 000000000 001111121111111100
Q ss_pred HHhccCCCCCeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCC--ChHHHHHHHHHHHhCCCcEEEEE
Q 011608 223 LRDGISKLPPIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTL--SANQMIEVAWGLELSQQRFIWVV 300 (481)
Q Consensus 223 ~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~--~~~~~~~~~~al~~~~~~~i~~~ 300 (481)
. ..... ++.++ |. . .+....+|+...+++++||+++||.... ..+.+..++++++..+.+++|+.
T Consensus 204 -~-~~~~~-~~~~~-~~---~------~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~ 270 (398)
T 3oti_A 204 -A-EPEGW-FMRWV-PY---G------GGAVLGDRLPPVPARPEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLAL 270 (398)
T ss_dssp -S-CCCSB-CCCCC-CC---C------CCEECCSSCCCCCSSCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEEC
T ss_pred -C-CCCCC-Ccccc-CC---C------CCcCCchhhhcCCCCCEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEE
Confidence 0 00001 11111 00 0 1233445776556677999999998443 56678899999999999999997
Q ss_pred cCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCccee
Q 011608 301 RPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLI 380 (481)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v 380 (481)
++.... ....+|+ |+.+.+|+|+.++|++++ +||||||.||++||+++|+|+|
T Consensus 271 g~~~~~----------------~l~~~~~---------~v~~~~~~~~~~ll~~ad--~~v~~~G~~t~~Eal~~G~P~v 323 (398)
T 3oti_A 271 GDLDIS----------------PLGTLPR---------NVRAVGWTPLHTLLRTCT--AVVHHGGGGTVMTAIDAGIPQL 323 (398)
T ss_dssp TTSCCG----------------GGCSCCT---------TEEEESSCCHHHHHTTCS--EEEECCCHHHHHHHHHHTCCEE
T ss_pred CCcChh----------------hhccCCC---------cEEEEccCCHHHHHhhCC--EEEECCCHHHHHHHHHhCCCEE
Confidence 543210 0112233 899999999999999977 9999999999999999999999
Q ss_pred ecccccchhhhH--HHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHH
Q 011608 381 VWPLYAEQKMNA--TMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYN 458 (481)
Q Consensus 381 ~~P~~~DQ~~na--~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~ 458 (481)
++|+.+||+.|+ .++ ++.|+|+.++. .+.+++.|. ++|+|++ +|+++++++++ +....+..+
T Consensus 324 ~~p~~~dq~~~a~~~~~-~~~g~g~~~~~----~~~~~~~l~----~ll~~~~---~~~~~~~~~~~----~~~~~~~~~ 387 (398)
T 3oti_A 324 LAPDPRDQFQHTAREAV-SRRGIGLVSTS----DKVDADLLR----RLIGDES---LRTAAREVREE----MVALPTPAE 387 (398)
T ss_dssp ECCCTTCCSSCTTHHHH-HHHTSEEECCG----GGCCHHHHH----HHHHCHH---HHHHHHHHHHH----HHTSCCHHH
T ss_pred EcCCCchhHHHHHHHHH-HHCCCEEeeCC----CCCCHHHHH----HHHcCHH---HHHHHHHHHHH----HHhCCCHHH
Confidence 999999999999 998 69999999874 667888777 7888877 99999999998 444555444
Q ss_pred HHH
Q 011608 459 ALS 461 (481)
Q Consensus 459 ~~~ 461 (481)
.++
T Consensus 388 ~~~ 390 (398)
T 3oti_A 388 TVR 390 (398)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 18
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=100.00 E-value=1.8e-32 Score=272.49 Aligned_cols=352 Identities=13% Similarity=0.091 Sum_probs=224.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEec-CCCC-----CCCCCC-
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSL-PPVD-----ISALLD- 77 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~-----~~~~~~- 77 (481)
+|||+|++.++.||++|++.|+++|.++ ||+|++++++...+.+.. .++.++.+ +... .....+
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~-GheV~v~~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~ 71 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQAS-GHEVLIAAPPELQATAHG--------AGLTTAGIRGNDRTGDTGGTTQLRF 71 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHT-TCEEEEEECHHHHHHHHH--------BTCEEEEC--------------CCS
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHC-CCEEEEecChhhHHHHHh--------CCCceeeecCCccchhhhhhhcccc
Confidence 4899999999999999999999999999 999999998754443333 25666666 2210 000000
Q ss_pred --------CCccHHHHHHHHHHHh-------hHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHH
Q 011608 78 --------ADASIVIKIIFMMRES-------LPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFL 142 (481)
Q Consensus 78 --------~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~ 142 (481)
........+....... ...+.++++++ +||+|++|...+.+..+|+.+|||++.+........
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~ 149 (391)
T 3tsa_A 72 PNPAFGQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAW--RPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDPTA 149 (391)
T ss_dssp CCGGGGCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEEETTCHHHHHHHHHTTCCEEEECCSCCCTT
T ss_pred cccccccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhc--CCCEEEeCcchhHHHHHHHHhCCCEEEEecCCcccc
Confidence 0011111222223333 56777888888 999999998777788899999999988654321000
Q ss_pred HHHhhcccchhhhhccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhc-----ccceEEecChhhhcH
Q 011608 143 AATIYFPTIDKRLQEEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMV-----TADGILINTWEDLEP 217 (481)
Q Consensus 143 ~~~~~~p~~~~~~~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~s~~~l~~ 217 (481)
. . . .......+.+...... ..+..+.....+++.
T Consensus 150 ~----------~------------------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (391)
T 3tsa_A 150 G----------P------------------------F-------SDRAHELLDPVCRHHGLTGLPTPELILDPCPPSLQA 188 (391)
T ss_dssp T----------H------------------------H-------HHHHHHHHHHHHHHTTSSSSCCCSEEEECSCGGGSC
T ss_pred c----------c------------------------c-------cchHHHHHHHHHHHcCCCCCCCCceEEEecChhhcC
Confidence 0 0 0 0000000101111110 012222222222211
Q ss_pred HHHHHHHhccCCCCCeeeeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCC--CC-hHHHHHHHHHHHhC-C
Q 011608 218 TTLASLRDGISKLPPIYPIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGT--LS-ANQMIEVAWGLELS-Q 293 (481)
Q Consensus 218 ~~~~~~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~--~~-~~~~~~~~~al~~~-~ 293 (481)
. ... ... ++.++ |.. .+....+|+...+++++||+++||... .. .+.+..++++ ++. +
T Consensus 189 ~-----~~~-~~~-~~~~~-p~~---------~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~ 250 (391)
T 3tsa_A 189 S-----DAP-QGA-PVQYV-PYN---------GSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAA-TELPG 250 (391)
T ss_dssp T-----TSC-CCE-ECCCC-CCC---------CCEECCGGGSSCCSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTT
T ss_pred C-----CCC-ccC-Ceeee-cCC---------CCcCCCchhhcCCCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCC
Confidence 1 000 000 12222 110 122344577665667799999999733 23 5667888888 777 7
Q ss_pred CcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHH
Q 011608 294 QRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESI 373 (481)
Q Consensus 294 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal 373 (481)
.+++|+.++.... ....++ .|+.+.+|+|+.++|++++ +||||||.||++||+
T Consensus 251 ~~~v~~~~~~~~~----------------~l~~~~---------~~v~~~~~~~~~~ll~~ad--~~v~~~G~~t~~Ea~ 303 (391)
T 3tsa_A 251 VEAVIAVPPEHRA----------------LLTDLP---------DNARIAESVPLNLFLRTCE--LVICAGGSGTAFTAT 303 (391)
T ss_dssp EEEEEECCGGGGG----------------GCTTCC---------TTEEECCSCCGGGTGGGCS--EEEECCCHHHHHHHH
T ss_pred eEEEEEECCcchh----------------hcccCC---------CCEEEeccCCHHHHHhhCC--EEEeCCCHHHHHHHH
Confidence 7888886433110 011222 2888899999999997766 999999999999999
Q ss_pred HcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcC
Q 011608 374 VNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKG 453 (481)
Q Consensus 374 ~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~ 453 (481)
++|+|+|++|...||+.|+.++ ++.|+|+.++.. ....+++.|.++|.++|.|++ ++++++++++. +...
T Consensus 304 ~~G~P~v~~p~~~~q~~~a~~~-~~~g~g~~~~~~--~~~~~~~~l~~ai~~ll~~~~---~~~~~~~~~~~----~~~~ 373 (391)
T 3tsa_A 304 RLGIPQLVLPQYFDQFDYARNL-AAAGAGICLPDE--QAQSDHEQFTDSIATVLGDTG---FAAAAIKLSDE----ITAM 373 (391)
T ss_dssp HTTCCEEECCCSTTHHHHHHHH-HHTTSEEECCSH--HHHTCHHHHHHHHHHHHTCTH---HHHHHHHHHHH----HHTS
T ss_pred HhCCCEEecCCcccHHHHHHHH-HHcCCEEecCcc--cccCCHHHHHHHHHHHHcCHH---HHHHHHHHHHH----HHcC
Confidence 9999999999999999999999 699999998610 024789999999999999988 99999998888 4445
Q ss_pred CChHHHHHHH
Q 011608 454 GSSYNALSQV 463 (481)
Q Consensus 454 g~~~~~~~~~ 463 (481)
++..+.++.+
T Consensus 374 ~~~~~~~~~i 383 (391)
T 3tsa_A 374 PHPAALVRTL 383 (391)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6554444433
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=100.00 E-value=5.1e-31 Score=263.73 Aligned_cols=357 Identities=15% Similarity=0.168 Sum_probs=232.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCC------------
Q 011608 3 TTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPV------------ 70 (481)
Q Consensus 3 ~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------ 70 (481)
..+|||++++.++.||++|++.|+++|.++ ||+|++++++...+.+.. .++.++.++..
T Consensus 18 ~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~-GheV~v~~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~ 88 (412)
T 3otg_A 18 GRHMRVLFASLGTHGHTYPLLPLATAARAA-GHEVTFATGEGFAGTLRK--------LGFEPVATGMPVFDGFLAALRIR 88 (412)
T ss_dssp CCSCEEEEECCSSHHHHGGGHHHHHHHHHT-TCEEEEEECGGGHHHHHH--------TTCEEEECCCCHHHHHHHHHHHH
T ss_pred cceeEEEEEcCCCcccHHHHHHHHHHHHHC-CCEEEEEccHHHHHHHHh--------cCCceeecCcccccchhhhhhhh
Confidence 456999999999999999999999999999 999999998854333222 26778887740
Q ss_pred -CCCCCCC--CC----ccHHHHHHHH-HHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEEechhHHHH
Q 011608 71 -DISALLD--AD----ASIVIKIIFM-MRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVYIASNAWFL 142 (481)
Q Consensus 71 -~~~~~~~--~~----~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~ 142 (481)
..... + .. ......+... .......+.+++++. +||+|++|....++..+|+.+|||++.........
T Consensus 89 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~- 164 (412)
T 3otg_A 89 FDTDSP-EGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERL--RPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTP- 164 (412)
T ss_dssp HSCSCC-TTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHH--CCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCC-
T ss_pred hcccCC-ccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhc--CCCEEEECchhhHHHHHHHHcCCCEEEecccccCc-
Confidence 00000 0 00 0111122222 233446777888888 99999999877777889999999998865432100
Q ss_pred HHHhhcccchhhhhccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhh-------hhcccceEEecChhhh
Q 011608 143 AATIYFPTIDKRLQEEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGL-------EMVTADGILINTWEDL 215 (481)
Q Consensus 143 ~~~~~~p~~~~~~~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~s~~~l 215 (481)
+.....+ ......+..... .....+.++..+-.+.
T Consensus 165 ------~~~~~~~--------------------------------~~~~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~ 206 (412)
T 3otg_A 165 ------DDLTRSI--------------------------------EEEVRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSL 206 (412)
T ss_dssp ------SHHHHHH--------------------------------HHHHHHHHHHTTCCCCSSCCGGGGCCEEECSCGGG
T ss_pred ------hhhhHHH--------------------------------HHHHHHHHHHcCCCCCcccccCCCCeEEeeCCHHh
Confidence 0000000 000000000000 0112233444333333
Q ss_pred cHHHHHHHHhccCCCCCeeeeCCcccCCCCCCCCCchhhhhh-hccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCC
Q 011608 216 EPTTLASLRDGISKLPPIYPIGPVVRSMGSSHMSENSSLLEW-LDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQ 294 (481)
Q Consensus 216 ~~~~~~~~~~~~~~~p~~~~vGpl~~~~~~~~~~~~~~~~~~-l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~ 294 (481)
+..... +... +. ++.++++- ...+..+| ....+++++||+++||......+.+..+++++++.+.
T Consensus 207 ~~~~~~-~~~~--~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~ 272 (412)
T 3otg_A 207 QEPEFR-ARPR--RH-ELRPVPFA----------EQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDA 272 (412)
T ss_dssp SCHHHH-TCTT--EE-ECCCCCCC----------CCCCCCGGGGGSCTTSCEEEEECTTTTCSCHHHHHHHHHHHHTSSS
T ss_pred cCCccc-CCCC--cc-eeeccCCC----------CCCCCCCccccccCCCCEEEEEcCCCCcCcHHHHHHHHHHHHcCCC
Confidence 221100 0000 00 11122111 11223445 2323456699999999875566778889999998899
Q ss_pred cEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHH
Q 011608 295 RFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIV 374 (481)
Q Consensus 295 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~ 374 (481)
+++|+.+..... . ....+++ ++.+.+|+|+.++|++++ +||+|||+||++||++
T Consensus 273 ~~~~~~g~~~~~-------------~--~l~~~~~---------~v~~~~~~~~~~~l~~ad--~~v~~~g~~t~~Ea~a 326 (412)
T 3otg_A 273 DVLVASGPSLDV-------------S--GLGEVPA---------NVRLESWVPQAALLPHVD--LVVHHGGSGTTLGALG 326 (412)
T ss_dssp EEEEECCSSCCC-------------T--TCCCCCT---------TEEEESCCCHHHHGGGCS--EEEESCCHHHHHHHHH
T ss_pred EEEEEECCCCCh-------------h--hhccCCC---------cEEEeCCCCHHHHHhcCc--EEEECCchHHHHHHHH
Confidence 999988654210 0 1122333 788899999999999988 8999999999999999
Q ss_pred cCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCC
Q 011608 375 NGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGG 454 (481)
Q Consensus 375 ~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g 454 (481)
+|+|+|++|..+||..|+..+ ++.|+|..++. +.+++++|.++|.++|.|++ +++++.+.++++ ....
T Consensus 327 ~G~P~v~~p~~~~q~~~~~~v-~~~g~g~~~~~----~~~~~~~l~~ai~~ll~~~~---~~~~~~~~~~~~----~~~~ 394 (412)
T 3otg_A 327 AGVPQLSFPWAGDSFANAQAV-AQAGAGDHLLP----DNISPDSVSGAAKRLLAEES---YRAGARAVAAEI----AAMP 394 (412)
T ss_dssp HTCCEEECCCSTTHHHHHHHH-HHHTSEEECCG----GGCCHHHHHHHHHHHHHCHH---HHHHHHHHHHHH----HHSC
T ss_pred hCCCEEecCCchhHHHHHHHH-HHcCCEEecCc----ccCCHHHHHHHHHHHHhCHH---HHHHHHHHHHHH----hcCC
Confidence 999999999999999999999 69999999875 67899999999999999887 899888888873 3445
Q ss_pred ChHHHHHH
Q 011608 455 SSYNALSQ 462 (481)
Q Consensus 455 ~~~~~~~~ 462 (481)
+..+.++.
T Consensus 395 ~~~~~~~~ 402 (412)
T 3otg_A 395 GPDEVVRL 402 (412)
T ss_dssp CHHHHHTT
T ss_pred CHHHHHHH
Confidence 54443333
No 20
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.96 E-value=3.8e-28 Score=238.27 Aligned_cols=309 Identities=14% Similarity=0.098 Sum_probs=192.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh-ccCCCCCCceEEEecCCCCCCCCCCCCccHHHH
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ-LRNLPNPHLFNIVSLPPVDISALLDADASIVIK 85 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 85 (481)
+|+|..-++.||++|.++||++|+++ ||+|+|++++... ++. ++. .++.+..++....... ...+....
T Consensus 4 ~i~i~~GGTgGHi~palala~~L~~~-g~~V~~vg~~~g~---e~~~v~~----~g~~~~~i~~~~~~~~--~~~~~~~~ 73 (365)
T 3s2u_A 4 NVLIMAGGTGGHVFPALACAREFQAR-GYAVHWLGTPRGI---ENDLVPK----AGLPLHLIQVSGLRGK--GLKSLVKA 73 (365)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHT-TCEEEEEECSSST---HHHHTGG----GTCCEEECC----------------C
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCchH---hhchhhh----cCCcEEEEECCCcCCC--CHHHHHHH
Confidence 79999888889999999999999999 9999999987432 222 221 2567777764332211 00111111
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCch--HHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccCCC
Q 011608 86 IIFMMRESLPALRSSISTLKPRPTALFADLFGTE--AFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGRK 163 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 163 (481)
...+.. .......++++. +||+||++....+ +..+|+.+|+|+++.....
T Consensus 74 ~~~~~~-~~~~~~~~l~~~--~PDvVi~~g~~~s~p~~laA~~~~iP~vihe~n~------------------------- 125 (365)
T 3s2u_A 74 PLELLK-SLFQALRVIRQL--RPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQNA------------------------- 125 (365)
T ss_dssp HHHHHH-HHHHHHHHHHHH--CCSEEEECSSSTHHHHHHHHHHTTCCEEEEECSS-------------------------
T ss_pred HHHHHH-HHHHHHHHHHhc--CCCEEEEcCCcchHHHHHHHHHcCCCEEEEecch-------------------------
Confidence 122222 233456678888 9999998854443 4578999999998744321
Q ss_pred CCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeeeCCcccCC
Q 011608 164 QPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPIGPVVRSM 243 (481)
Q Consensus 164 ~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGpl~~~~ 243 (481)
+||.. +.+ . .+.++.+ ..++.+. ++...+.+++|+.+..+
T Consensus 126 ----~~G~~-------------------nr~---l--~~~a~~v-~~~~~~~-----------~~~~~k~~~~g~pvr~~ 165 (365)
T 3s2u_A 126 ----VAGTA-------------------NRS---L--APIARRV-CEAFPDT-----------FPASDKRLTTGNPVRGE 165 (365)
T ss_dssp ----SCCHH-------------------HHH---H--GGGCSEE-EESSTTS-----------SCC---CEECCCCCCGG
T ss_pred ----hhhhH-------------------HHh---h--cccccee-eeccccc-----------ccCcCcEEEECCCCchh
Confidence 22211 000 0 1112222 2223221 11122477788766542
Q ss_pred CCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC----CCcEEEEEcCCCCCCCCCcccccCCCC
Q 011608 244 GSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS----QQRFIWVVRPPMDNDVSGSFFKVGDGS 319 (481)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~ 319 (481)
... .. .....++ +.+++|++..||..... ..+.+.++++.+ +..++|+.+...
T Consensus 166 ~~~---~~-~~~~~~~--~~~~~ilv~gGs~g~~~--~~~~~~~al~~l~~~~~~~vi~~~G~~~--------------- 222 (365)
T 3s2u_A 166 LFL---DA-HARAPLT--GRRVNLLVLGGSLGAEP--LNKLLPEALAQVPLEIRPAIRHQAGRQH--------------- 222 (365)
T ss_dssp GCC---CT-TSSCCCT--TSCCEEEECCTTTTCSH--HHHHHHHHHHTSCTTTCCEEEEECCTTT---------------
T ss_pred hcc---ch-hhhcccC--CCCcEEEEECCcCCccc--cchhhHHHHHhcccccceEEEEecCccc---------------
Confidence 211 00 0011122 34558999999876532 334566666654 345666653221
Q ss_pred CCCCCCCCchhHHhhhc--CCCccccccCchh-hhhccccCCceeeecCCchhHHHHHcCcceeecccc----cchhhhH
Q 011608 320 SDGTPDYLPDGFLTRNA--KMGLVVPDWAPQV-EILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLY----AEQKMNA 392 (481)
Q Consensus 320 ~~~~~~~lp~~~~~~~~--~~~~~v~~~~pq~-~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~----~DQ~~na 392 (481)
.+...+..+ +.++.+.+|++++ +++..++ ++|||+|.+|++|++++|+|+|++|+. .||..||
T Consensus 223 --------~~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aD--lvI~raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA 292 (365)
T 3s2u_A 223 --------AEITAERYRTVAVEADVAPFISDMAAAYAWAD--LVICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNA 292 (365)
T ss_dssp --------HHHHHHHHHHTTCCCEEESCCSCHHHHHHHCS--EEEECCCHHHHHHHHHHTCCEEECC-----CCHHHHHH
T ss_pred --------cccccceecccccccccccchhhhhhhhccce--EEEecCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHH
Confidence 122223222 2367788999885 6888888 899999999999999999999999975 5899999
Q ss_pred HHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 393 TMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 393 ~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
+.+ ++.|+|+.++. ++++++.|.++|.++|.|++
T Consensus 293 ~~l-~~~G~a~~l~~----~~~~~~~L~~~i~~ll~d~~ 326 (365)
T 3s2u_A 293 EFL-VRSGAGRLLPQ----KSTGAAELAAQLSEVLMHPE 326 (365)
T ss_dssp HHH-HTTTSEEECCT----TTCCHHHHHHHHHHHHHCTH
T ss_pred HHH-HHCCCEEEeec----CCCCHHHHHHHHHHHHCCHH
Confidence 999 69999999874 78999999999999999875
No 21
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.95 E-value=8.7e-28 Score=209.75 Aligned_cols=162 Identities=23% Similarity=0.417 Sum_probs=137.6
Q ss_pred CchhhhhhhccCCCCcEEEEEeCCCC-CCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCc
Q 011608 250 ENSSLLEWLDMQPTESVIYVSFGGGG-TLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLP 328 (481)
Q Consensus 250 ~~~~~~~~l~~~~~~~vv~vs~GS~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 328 (481)
+++++.+|++..+++++|||++||.. ....+.+..+++++++.+.+++|+.+... ...++
T Consensus 7 l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~-------------------~~~~~ 67 (170)
T 2o6l_A 7 LPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNK-------------------PDTLG 67 (170)
T ss_dssp CCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSC-------------------CTTCC
T ss_pred CCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcC-------------------cccCC
Confidence 78899999987766779999999985 34566788999999988999999985431 12233
Q ss_pred hhHHhhhcCCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEecccc
Q 011608 329 DGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEM 408 (481)
Q Consensus 329 ~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~ 408 (481)
+ |+.+.+|+||.+++.|+++++||||||+||++||+++|+|+|++|...||+.||.++ ++.|+|+.++.
T Consensus 68 ~---------~v~~~~~~~~~~~l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l-~~~g~g~~~~~- 136 (170)
T 2o6l_A 68 L---------NTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHM-KARGAAVRVDF- 136 (170)
T ss_dssp T---------TEEEESSCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH-HTTTSEEECCT-
T ss_pred C---------cEEEecCCCHHHHhcCCCcCEEEEcCCccHHHHHHHcCCCEEeccchhhHHHHHHHH-HHcCCeEEecc-
Confidence 3 788899999999997777779999999999999999999999999999999999999 69999999874
Q ss_pred CCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 011608 409 PTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAK 447 (481)
Q Consensus 409 ~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~ 447 (481)
++++.++|.++|.+++.|++ ||++++++++.++
T Consensus 137 ---~~~~~~~l~~~i~~ll~~~~---~~~~a~~~~~~~~ 169 (170)
T 2o6l_A 137 ---NTMSSTDLLNALKRVINDPS---YKENVMKLSRIQH 169 (170)
T ss_dssp ---TTCCHHHHHHHHHHHHHCHH---HHHHHHHHC----
T ss_pred ---ccCCHHHHHHHHHHHHcCHH---HHHHHHHHHHHhh
Confidence 67899999999999998887 9999999988754
No 22
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.82 E-value=3.1e-18 Score=167.87 Aligned_cols=322 Identities=13% Similarity=0.069 Sum_probs=192.1
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCc
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADA 80 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (481)
|+..+|+|++++.+..||..+.+.|+++|.++ ||+|++++....... ..+.. .++.+..++....... ...
T Consensus 2 M~~m~mkIl~~~~~~gG~~~~~~~la~~L~~~-G~~V~v~~~~~~~~~--~~~~~----~g~~~~~~~~~~~~~~--~~~ 72 (364)
T 1f0k_A 2 MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQ-GWQVRWLGTADRMEA--DLVPK----HGIEIDFIRISGLRGK--GIK 72 (364)
T ss_dssp -----CEEEEECCSSHHHHHHHHHHHHHHHTT-TCEEEEEECTTSTHH--HHGGG----GTCEEEECCCCCCTTC--CHH
T ss_pred CCCCCcEEEEEeCCCccchhHHHHHHHHHHHc-CCEEEEEecCCcchh--hhccc----cCCceEEecCCccCcC--ccH
Confidence 34334899999988889999999999999999 999999998743211 11111 2566766654322111 000
Q ss_pred cHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCC--chHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhcc
Q 011608 81 SIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFG--TEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEE 158 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (481)
......... ......+..++++. +||+|+++... ..+..+++.+++|+++.....
T Consensus 73 ~~~~~~~~~-~~~~~~l~~~l~~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~-------------------- 129 (364)
T 1f0k_A 73 ALIAAPLRI-FNAWRQARAIMKAY--KPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNG-------------------- 129 (364)
T ss_dssp HHHTCHHHH-HHHHHHHHHHHHHH--CCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSS--------------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhc--CCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCC--------------------
Confidence 000001111 12234566777888 99999998543 234567888999988643211
Q ss_pred ccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeeeCC
Q 011608 159 HYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPIGP 238 (481)
Q Consensus 159 ~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGp 238 (481)
.++. .. + ...+..+.++..+- +. +|++..+|+
T Consensus 130 ---------~~~~-------------------~~---~--~~~~~~d~v~~~~~-~~--------------~~~~~~i~n 161 (364)
T 1f0k_A 130 ---------IAGL-------------------TN---K--WLAKIATKVMQAFP-GA--------------FPNAEVVGN 161 (364)
T ss_dssp ---------SCCH-------------------HH---H--HHTTTCSEEEESST-TS--------------SSSCEECCC
T ss_pred ---------CCcH-------------------HH---H--HHHHhCCEEEecCh-hh--------------cCCceEeCC
Confidence 0000 00 0 01123344444321 11 124556665
Q ss_pred cccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCCcccccC
Q 011608 239 VVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS--QQRFIWVVRPPMDNDVSGSFFKVG 316 (481)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~ 316 (481)
.+...... .+. ..+.+...+++++|+++.|+... ......++++++.+ +.++++.++..
T Consensus 162 ~v~~~~~~---~~~-~~~~~~~~~~~~~il~~~g~~~~--~k~~~~li~a~~~l~~~~~~l~i~G~~------------- 222 (364)
T 1f0k_A 162 PVRTDVLA---LPL-PQQRLAGREGPVRVLVVGGSQGA--RILNQTMPQVAAKLGDSVTIWHQSGKG------------- 222 (364)
T ss_dssp CCCHHHHT---SCC-HHHHHTTCCSSEEEEEECTTTCC--HHHHHHHHHHHHHHGGGEEEEEECCTT-------------
T ss_pred ccchhhcc---cch-hhhhcccCCCCcEEEEEcCchHh--HHHHHHHHHHHHHhcCCcEEEEEcCCc-------------
Confidence 44221100 011 11122222334567787887643 33455566776654 35556665322
Q ss_pred CCCCCCCCCCCchhHHhhh---cCCCccccccCch-hhhhccccCCceeeecCCchhHHHHHcCcceeecccc---cchh
Q 011608 317 DGSSDGTPDYLPDGFLTRN---AKMGLVVPDWAPQ-VEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLY---AEQK 389 (481)
Q Consensus 317 ~~~~~~~~~~lp~~~~~~~---~~~~~~v~~~~pq-~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~---~DQ~ 389 (481)
. .+.+.+.. +-.++.+.+|+++ .+++..++ ++|+++|.+++.||+++|+|+|+.|.. .||.
T Consensus 223 ---------~-~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad--~~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q~ 290 (364)
T 1f0k_A 223 ---------S-QQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWAD--VVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQY 290 (364)
T ss_dssp ---------C-HHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCS--EEEECCCHHHHHHHHHHTCCEEECCCCCTTCHHH
T ss_pred ---------h-HHHHHHHHhhcCCCceEEecchhhHHHHHHhCC--EEEECCchHHHHHHHHhCCCEEEeeCCCCchhHH
Confidence 1 13333322 2237888899954 67888877 899999989999999999999999998 7999
Q ss_pred hhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 011608 390 MNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELK 443 (481)
Q Consensus 390 ~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~ 443 (481)
.|+..+ .+.|.|..++. .+++.+++.++|.++ |++ .+++..+-+
T Consensus 291 ~~~~~~-~~~g~g~~~~~----~d~~~~~la~~i~~l--~~~---~~~~~~~~~ 334 (364)
T 1f0k_A 291 WNALPL-EKAGAAKIIEQ----PQLSVDAVANTLAGW--SRE---TLLTMAERA 334 (364)
T ss_dssp HHHHHH-HHTTSEEECCG----GGCCHHHHHHHHHTC--CHH---HHHHHHHHH
T ss_pred HHHHHH-HhCCcEEEecc----ccCCHHHHHHHHHhc--CHH---HHHHHHHHH
Confidence 999998 58899998874 667799999999888 554 444444333
No 23
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.58 E-value=2.6e-15 Score=134.14 Aligned_cols=132 Identities=20% Similarity=0.181 Sum_probs=92.6
Q ss_pred CCCcEEEEEeCCCCCCChHHHHHH-----HHHHHhCC-CcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhh
Q 011608 262 PTESVIYVSFGGGGTLSANQMIEV-----AWGLELSQ-QRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRN 335 (481)
Q Consensus 262 ~~~~vv~vs~GS~~~~~~~~~~~~-----~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~ 335 (481)
+++++|||+.||.... .+.+..+ +++|...+ .+++++++.... .......+..
T Consensus 26 ~~~~~VlVtgGS~~~~-n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~~--------------------~~~~~~~~~~ 84 (224)
T 2jzc_A 26 IEEKALFVTCGATVPF-PKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYS--------------------SEFEHLVQER 84 (224)
T ss_dssp CCSCCEEEECCSCCSC-HHHHHHHTSHHHHHHHHTTTCCCEEECCCSSSC--------------------CCCCSHHHHH
T ss_pred CCCCEEEEEcCCchHH-HHHHHHHHHHHHHHHHhcCCCeEEEEEECCCch--------------------hhHHHHHHhh
Confidence 3456899999997322 2223333 48887777 789998865421 0001111000
Q ss_pred ---------------------------cCCCccccccCchh-hhhc-cccCCceeeecCCchhHHHHHcCcceeecccc-
Q 011608 336 ---------------------------AKMGLVVPDWAPQV-EILG-HASVGGFLSHCGWNSTLESIVNGVPLIVWPLY- 385 (481)
Q Consensus 336 ---------------------------~~~~~~v~~~~pq~-~lL~-~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~- 385 (481)
.+.++.+.+|++++ ++++ .++ ++|||||.||++|++++|+|+|++|..
T Consensus 85 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~v~v~~f~~~m~~~l~~~Ad--lvIshaGagTv~Eal~~G~P~IvVP~~~ 162 (224)
T 2jzc_A 85 GGQRESQKIPIDQFGCGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSD--LVISHAGTGSILDSLRLNKPLIVCVNDS 162 (224)
T ss_dssp TCEECSCCCSSCTTCTTCSCEEEESTTTSSEEEECCSSSSHHHHHHHHCS--CEEESSCHHHHHHHHHTTCCCCEECCSS
T ss_pred hccccccccccccccccccccccccccCCceEEEeeccchHHHHHHhcCC--EEEECCcHHHHHHHHHhCCCEEEEcCcc
Confidence 11245566888876 7898 877 999999999999999999999999985
Q ss_pred ---cchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHH
Q 011608 386 ---AEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRI 426 (481)
Q Consensus 386 ---~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~v 426 (481)
.||..||+++ ++.|+++.+ ++++|.++|+++
T Consensus 163 ~~~~HQ~~nA~~l-~~~G~~~~~---------~~~~L~~~i~~l 196 (224)
T 2jzc_A 163 LMDNHQQQIADKF-VELGYVWSC---------APTETGLIAGLR 196 (224)
T ss_dssp CCCCHHHHHHHHH-HHHSCCCEE---------CSCTTTHHHHHH
T ss_pred cccchHHHHHHHH-HHCCCEEEc---------CHHHHHHHHHHH
Confidence 4799999999 699998654 345667777666
No 24
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.50 E-value=9.6e-13 Score=122.56 Aligned_cols=117 Identities=10% Similarity=0.072 Sum_probs=88.2
Q ss_pred CcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhc-CCCccc
Q 011608 264 ESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNA-KMGLVV 342 (481)
Q Consensus 264 ~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~v 342 (481)
.+.|+|++|... ..+....+++++.... ++.++.+.+. ...+.+.+... ..|+.+
T Consensus 157 ~~~ILv~~GG~d--~~~l~~~vl~~L~~~~-~i~vv~G~~~---------------------~~~~~l~~~~~~~~~v~v 212 (282)
T 3hbm_A 157 KYDFFICMGGTD--IKNLSLQIASELPKTK-IISIATSSSN---------------------PNLKKLQKFAKLHNNIRL 212 (282)
T ss_dssp CEEEEEECCSCC--TTCHHHHHHHHSCTTS-CEEEEECTTC---------------------TTHHHHHHHHHTCSSEEE
T ss_pred CCeEEEEECCCc--hhhHHHHHHHHhhcCC-CEEEEECCCc---------------------hHHHHHHHHHhhCCCEEE
Confidence 457999999643 2335667888886644 5666664431 11233333322 247888
Q ss_pred cccCchh-hhhccccCCceeeecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEecccc
Q 011608 343 PDWAPQV-EILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEM 408 (481)
Q Consensus 343 ~~~~pq~-~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~ 408 (481)
..|++++ +++..++ ++||+|| +|+.|+++.|+|+|++|+..+|..||+.+ ++.|+++.+..+
T Consensus 213 ~~~~~~m~~~m~~aD--lvI~~gG-~T~~E~~~~g~P~i~ip~~~~Q~~nA~~l-~~~G~~~~~~~~ 275 (282)
T 3hbm_A 213 FIDHENIAKLMNESN--KLIISAS-SLVNEALLLKANFKAICYVKNQESTATWL-AKKGYEVEYKYL 275 (282)
T ss_dssp EESCSCHHHHHHTEE--EEEEESS-HHHHHHHHTTCCEEEECCSGGGHHHHHHH-HHTTCEEECGGG
T ss_pred EeCHHHHHHHHHHCC--EEEECCc-HHHHHHHHcCCCEEEEeCCCCHHHHHHHH-HHCCCEEEcchh
Confidence 8999886 5888888 9999999 89999999999999999999999999999 699999998754
No 25
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.32 E-value=3.2e-11 Score=118.29 Aligned_cols=321 Identities=13% Similarity=0.056 Sum_probs=162.0
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEE-EecCCCCCCCCCCCC
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNI-VSLPPVDISALLDAD 79 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~ 79 (481)
|+...|+|++++. ..++......|+++|.+++||+|.++++..........+... ++.+ ..++... ..
T Consensus 1 ~~~~mmkIl~v~~-~~~~~~~~~~l~~~L~~~~g~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~ 69 (376)
T 1v4v_A 1 MEGGMKRVVLAFG-TRPEATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLF----GIQEDRNLDVMQ------ER 69 (376)
T ss_dssp ---CCEEEEEEEC-SHHHHHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTT----TCCCSEECCCCS------SC
T ss_pred CCCCceEEEEEEe-ccHHHHHHHHHHHHHHhCCCCceEEEEcCCcHHHHHHHHHHc----CCCcccccccCC------CC
Confidence 6777789999983 344445567889999886359988877653322212112222 2222 2222111 11
Q ss_pred ccHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEc--CCCch-HHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhh
Q 011608 80 ASIVIKIIFMMRESLPALRSSISTLKPRPTALFAD--LFGTE-AFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQ 156 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D--~~~~~-~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~ 156 (481)
......+ ......+..++++. +||+|++- ....+ +..+|+.+|+|++.+.....
T Consensus 70 ~~~~~~~----~~~~~~l~~~l~~~--~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~----------------- 126 (376)
T 1v4v_A 70 QALPDLA----ARILPQAARALKEM--GADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLR----------------- 126 (376)
T ss_dssp CCHHHHH----HHHHHHHHHHHHHT--TCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCC-----------------
T ss_pred ccHHHHH----HHHHHHHHHHHHHc--CCCEEEEeCChHHHHHHHHHHHHhCCCEEEEeCCCc-----------------
Confidence 1111111 12234566778888 99999973 22223 45678899999864322100
Q ss_pred ccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCC--Cee
Q 011608 157 EEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLP--PIY 234 (481)
Q Consensus 157 ~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p--~~~ 234 (481)
.. .. + ... .....+. ...+..+.++..+-.. .+.+... +.+ ++.
T Consensus 127 ----------~~------~~-----~--~~~---~~~~~~~-~~~~~~~~~~~~s~~~-----~~~l~~~--g~~~~ki~ 172 (376)
T 1v4v_A 127 ----------SG------NL-----K--EPF---PEEANRR-LTDVLTDLDFAPTPLA-----KANLLKE--GKREEGIL 172 (376)
T ss_dssp ----------CS------CT-----T--SST---THHHHHH-HHHHHCSEEEESSHHH-----HHHHHTT--TCCGGGEE
T ss_pred ----------cc------cc-----c--CCC---chHHHHH-HHHHHhceeeCCCHHH-----HHHHHHc--CCCcceEE
Confidence 00 00 0 000 0000010 0112234444444221 1222211 222 367
Q ss_pred eeCCcccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCC
Q 011608 235 PIGPVVRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS-----QQRFIWVVRPPMDNDVS 309 (481)
Q Consensus 235 ~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~ 309 (481)
.+|....+..... ....++.+.+ +++++|+++.|...... .+..+++|++.+ +.++++..+.+
T Consensus 173 vi~n~~~d~~~~~-~~~~~~~~~~---~~~~~vl~~~gr~~~~k--~~~~ll~a~~~l~~~~~~~~lv~~~g~~------ 240 (376)
T 1v4v_A 173 VTGQTGVDAVLLA-AKLGRLPEGL---PEGPYVTVTMHRRENWP--LLSDLAQALKRVAEAFPHLTFVYPVHLN------ 240 (376)
T ss_dssp ECCCHHHHHHHHH-HHHCCCCTTC---CSSCEEEECCCCGGGGG--GHHHHHHHHHHHHHHCTTSEEEEECCSC------
T ss_pred EECCchHHHHhhh-hhhhHHHHhc---CCCCEEEEEeCcccchH--HHHHHHHHHHHHHhhCCCeEEEEECCCC------
Confidence 7775432100000 0000111112 23447777777542221 355566666543 34544443211
Q ss_pred CcccccCCCCCCCCCCCCchhHHhhhc-CCCccccccCch---hhhhccccCCceeeecCCchhHHHHHcCcceeecccc
Q 011608 310 GSFFKVGDGSSDGTPDYLPDGFLTRNA-KMGLVVPDWAPQ---VEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLY 385 (481)
Q Consensus 310 ~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~v~~~~pq---~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~ 385 (481)
..+-+.+.+..+ .+++.+.+++++ .+++..++ +||+.+| |.+.||+++|+|+|+.+..
T Consensus 241 ---------------~~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad--~~v~~S~-g~~lEA~a~G~PvI~~~~~ 302 (376)
T 1v4v_A 241 ---------------PVVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASL--LLVTDSG-GLQEEGAALGVPVVVLRNV 302 (376)
T ss_dssp ---------------HHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEE--EEEESCH-HHHHHHHHTTCCEEECSSS
T ss_pred ---------------HHHHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCc--EEEECCc-CHHHHHHHcCCCEEeccCC
Confidence 001122222222 247777766655 47888877 8998884 4456999999999999877
Q ss_pred cchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 386 AEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 386 ~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
+++.. ++ +.|.|+.++ .+.++|.++|.+++.|++
T Consensus 303 ~~~~~----~~-~~g~g~lv~-------~d~~~la~~i~~ll~d~~ 336 (376)
T 1v4v_A 303 TERPE----GL-KAGILKLAG-------TDPEGVYRVVKGLLENPE 336 (376)
T ss_dssp CSCHH----HH-HHTSEEECC-------SCHHHHHHHHHHHHTCHH
T ss_pred Ccchh----hh-cCCceEECC-------CCHHHHHHHHHHHHhChH
Confidence 76655 22 557887763 289999999999998764
No 26
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.22 E-value=1.5e-10 Score=113.80 Aligned_cols=320 Identities=15% Similarity=0.087 Sum_probs=164.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCC-eEEEEecCCCchhhhhhccCCCCCCceEE-EecCCCCCCCCCCCCccHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDF-QVTIFVVATDTSTVQSQLRNLPNPHLFNI-VSLPPVDISALLDADASIV 83 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~ 83 (481)
|+|++++ +..++...+..|+++|.++ |+ ++.++.+..........+... ++.+ ..++... ......
T Consensus 1 mkIl~v~-~~~~~~~~~~~l~~~L~~~-g~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~ 68 (384)
T 1vgv_A 1 MKVLTVF-GTRPEAIKMAPLVHALAKD-PFFEAKVCVTAQHREMLDQVLKLF----SIVPDYDLNIMQ------PGQGLT 68 (384)
T ss_dssp CEEEEEE-CSHHHHHHHHHHHHHHHHS-TTCEEEEEECCSSGGGGHHHHHHH----TCCCSEECCCCS------TTSCHH
T ss_pred CeEEEEe-cccHHHHHHHHHHHHHHhC-CCCceEEEEcCCCHHHHHHHHHHc----CCCCCcceecCC------CCccHH
Confidence 6888876 5567788899999999999 84 887765543222111112111 1211 2222111 011111
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcC--CC-chHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhcccc
Q 011608 84 IKIIFMMRESLPALRSSISTLKPRPTALFADL--FG-TEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHY 160 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~--~~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (481)
. ........+..++++. +||+|++-. .. +.+..+|+..++|++......
T Consensus 69 ~----~~~~~~~~l~~~l~~~--~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~---------------------- 120 (384)
T 1vgv_A 69 E----ITCRILEGLKPILAEF--KPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGL---------------------- 120 (384)
T ss_dssp H----HHHHHHHHHHHHHHHH--CCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCC----------------------
T ss_pred H----HHHHHHHHHHHHHHHh--CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccc----------------------
Confidence 1 1122345677788888 999999732 22 234467788899987533210
Q ss_pred CCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCC--CeeeeCC
Q 011608 161 GRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLP--PIYPIGP 238 (481)
Q Consensus 161 ~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p--~~~~vGp 238 (481)
..... .........+.. ..+..+.++..+-... +.+... +.+ ++..+|.
T Consensus 121 -----------~~~~~----------~~~~~~~~~~~~-~~~~~d~ii~~s~~~~-----~~l~~~--g~~~~~i~vi~n 171 (384)
T 1vgv_A 121 -----------RTGDL----------YSPWPEEANRTL-TGHLAMYHFSPTETSR-----QNLLRE--NVADSRIFITGN 171 (384)
T ss_dssp -----------CCSCT----------TSSTTHHHHHHH-HHTTCSEEEESSHHHH-----HHHHHT--TCCGGGEEECCC
T ss_pred -----------ccccc----------cCCCchHhhHHH-HHhhccEEEcCcHHHH-----HHHHHc--CCChhhEEEeCC
Confidence 00000 000000011110 1223556655553221 112111 122 3667775
Q ss_pred cccCCC--CCCC-CC-c---hhhhhhhc-cCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC-----CCcEEEEEcCCCC
Q 011608 239 VVRSMG--SSHM-SE-N---SSLLEWLD-MQPTESVIYVSFGGGGTLSANQMIEVAWGLELS-----QQRFIWVVRPPMD 305 (481)
Q Consensus 239 l~~~~~--~~~~-~~-~---~~~~~~l~-~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~ 305 (481)
...+.. .+.. .. . .++.+.+. -.+++++++++.|...... ..+..++++++.+ +.++++..+..
T Consensus 172 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~-kg~~~li~a~~~l~~~~~~~~l~i~~g~~-- 248 (384)
T 1vgv_A 172 TVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFG-RGFEEICHALADIATTHQDIQIVYPVHLN-- 248 (384)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCC-HHHHHHHHHHHHHHHHCTTEEEEEECCBC--
T ss_pred hHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccc-hHHHHHHHHHHHHHhhCCCeEEEEEcCCC--
Confidence 432100 0000 00 0 12222222 1123457888888764332 3345555555442 34444432111
Q ss_pred CCCCCcccccCCCCCCCCCCCCchhHHhhhc-CCCccccccCch---hhhhccccCCceeeecCCchhHHHHHcCcceee
Q 011608 306 NDVSGSFFKVGDGSSDGTPDYLPDGFLTRNA-KMGLVVPDWAPQ---VEILGHASVGGFLSHCGWNSTLESIVNGVPLIV 381 (481)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~v~~~~pq---~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~ 381 (481)
..+-+.+.+..+ .+++.+.+++++ .+++..++ +||+.+| +.+.||+++|+|+|+
T Consensus 249 -------------------~~~~~~l~~~~~~~~~v~~~g~~~~~~~~~~~~~ad--~~v~~Sg-~~~lEA~a~G~PvI~ 306 (384)
T 1vgv_A 249 -------------------PNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAW--LILTDSG-GIQEEAPSLGKPVLV 306 (384)
T ss_dssp -------------------HHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHCS--EEEESSS-TGGGTGGGGTCCEEE
T ss_pred -------------------HHHHHHHHHHhhcCCCEEEeCCCCHHHHHHHHHhCc--EEEECCc-chHHHHHHcCCCEEE
Confidence 001112222222 247877666654 56787877 7998885 458899999999999
Q ss_pred cccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 382 WPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 382 ~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
.+..+++. .++ +.|.|+.++ . +.++|.++|.+++.|++
T Consensus 307 ~~~~~~~~----e~v-~~g~g~lv~-----~--d~~~la~~i~~ll~d~~ 344 (384)
T 1vgv_A 307 MRDTTERP----EAV-TAGTVRLVG-----T--DKQRIVEEVTRLLKDEN 344 (384)
T ss_dssp ESSCCSCH----HHH-HHTSEEEEC-----S--SHHHHHHHHHHHHHCHH
T ss_pred ccCCCCcc----hhh-hCCceEEeC-----C--CHHHHHHHHHHHHhChH
Confidence 98755433 232 557888775 3 89999999999998764
No 27
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.19 E-value=1.2e-08 Score=101.84 Aligned_cols=340 Identities=12% Similarity=0.086 Sum_probs=169.2
Q ss_pred CCcEEEEEcC---C--------CccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCC
Q 011608 4 TKTHIALLAS---P--------GMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDI 72 (481)
Q Consensus 4 ~~~~vvl~~~---p--------~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 72 (481)
..|||++++. | ..|+-.....|++.|.++ ||+|++++....... ....... .++.++.++....
T Consensus 19 ~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~-G~~V~v~~~~~~~~~--~~~~~~~--~~v~v~~~~~~~~ 93 (438)
T 3c48_A 19 SHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQ-GIEVDIYTRATRPSQ--GEIVRVA--ENLRVINIAAGPY 93 (438)
T ss_dssp CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHT-TCEEEEEEECCCGGG--CSEEEEE--TTEEEEEECCSCS
T ss_pred chheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhc-CCEEEEEecCCCCCC--ccccccc--CCeEEEEecCCCc
Confidence 4589999995 2 368888999999999999 999999998743221 0011111 3566776664332
Q ss_pred CCCCCCCccHHHHHHHHHHHhhHHHHHH-HhhcCCCCcEEEEcCCCch--HHHHHHHhCCceEEEechhHHHHHHHhhcc
Q 011608 73 SALLDADASIVIKIIFMMRESLPALRSS-ISTLKPRPTALFADLFGTE--AFQIADEFEMLKYVYIASNAWFLAATIYFP 149 (481)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~D~VI~D~~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~p 149 (481)
... . .......+..+. ..+... ++.. .+||+|++...... +..+++.+++|+|..........
T Consensus 94 ~~~-~-~~~~~~~~~~~~----~~~~~~~~~~~-~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~------- 159 (438)
T 3c48_A 94 EGL-S-KEELPTQLAAFT----GGMLSFTRREK-VTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVK------- 159 (438)
T ss_dssp SSC-C-GGGGGGGHHHHH----HHHHHHHHHHT-CCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSSCHHHH-------
T ss_pred ccc-c-hhHHHHHHHHHH----HHHHHHHHhcc-CCCCEEEeCCccHHHHHHHHHHHcCCCEEEEecCCcccc-------
Confidence 211 1 111111111111 112222 4433 14999997753222 33567888999887544321000
Q ss_pred cchhhhhccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCC
Q 011608 150 TIDKRLQEEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISK 229 (481)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~ 229 (481)
..... .. ........ ........+.++.++..|-...+.. ...+ +
T Consensus 160 ------------------~~~~~---~~-------~~~~~~~~-~~~~~~~~~~~d~ii~~s~~~~~~~-~~~~-----g 204 (438)
T 3c48_A 160 ------------------NSYRD---DS-------DTPESEAR-RICEQQLVDNADVLAVNTQEEMQDL-MHHY-----D 204 (438)
T ss_dssp ------------------SCC--------------CCHHHHHH-HHHHHHHHHHCSEEEESSHHHHHHH-HHHH-----C
T ss_pred ------------------ccccc---cc-------CCcchHHH-HHHHHHHHhcCCEEEEcCHHHHHHH-HHHh-----C
Confidence 00000 00 00000000 0011123456777777764332211 1111 1
Q ss_pred CC--CeeeeCCcccCCC-CCCC-CCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC-----CCcE-EEE
Q 011608 230 LP--PIYPIGPVVRSMG-SSHM-SENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS-----QQRF-IWV 299 (481)
Q Consensus 230 ~p--~~~~vGpl~~~~~-~~~~-~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~-i~~ 299 (481)
.+ ++..|.+.+.... .+.. .....+.+-+.-. +...+++..|+... ......++++++.+ +..+ ++.
T Consensus 205 ~~~~k~~vi~ngvd~~~~~~~~~~~~~~~r~~~~~~-~~~~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~p~~~~~l~i 281 (438)
T 3c48_A 205 ADPDRISVVSPGADVELYSPGNDRATERSRRELGIP-LHTKVVAFVGRLQP--FKGPQVLIKAVAALFDRDPDRNLRVII 281 (438)
T ss_dssp CCGGGEEECCCCCCTTTSCCC----CHHHHHHTTCC-SSSEEEEEESCBSG--GGCHHHHHHHHHHHHHHCTTCSEEEEE
T ss_pred CChhheEEecCCccccccCCcccchhhhhHHhcCCC-CCCcEEEEEeeecc--cCCHHHHHHHHHHHHhhCCCcceEEEE
Confidence 12 2555554433211 1100 0011133322221 22356777887633 23344555555443 1133 333
Q ss_pred EcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhc----CCCccccccCchh---hhhccccCCceeee----cCCch
Q 011608 300 VRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNA----KMGLVVPDWAPQV---EILGHASVGGFLSH----CGWNS 368 (481)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~----~~~~~v~~~~pq~---~lL~~~~~~~~I~H----gG~~s 368 (481)
++.... .+...+.+.+... ..++.+.+|+|+. +++..++ ++|.- |..++
T Consensus 282 ~G~~~~------------------~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~ad--v~v~ps~~e~~~~~ 341 (438)
T 3c48_A 282 CGGPSG------------------PNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAAD--IVAVPSFNESFGLV 341 (438)
T ss_dssp ECCBC------------------------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCS--EEEECCSCCSSCHH
T ss_pred EeCCCC------------------CCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCC--EEEECccccCCchH
Confidence 332110 0111123333222 2478888999864 5677777 56643 33458
Q ss_pred hHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 369 TLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 369 ~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
+.||+++|+|+|+.+. ......+ ++-+.|..++. -+.+++.++|.+++.|++
T Consensus 342 ~~Eama~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~------~d~~~la~~i~~l~~~~~ 393 (438)
T 3c48_A 342 AMEAQASGTPVIAARV----GGLPIAV-AEGETGLLVDG------HSPHAWADALATLLDDDE 393 (438)
T ss_dssp HHHHHHTTCCEEEESC----TTHHHHS-CBTTTEEEESS------CCHHHHHHHHHHHHHCHH
T ss_pred HHHHHHcCCCEEecCC----CChhHHh-hCCCcEEECCC------CCHHHHHHHHHHHHcCHH
Confidence 9999999999999764 3445455 45567777642 379999999999998755
No 28
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.16 E-value=9.5e-10 Score=108.67 Aligned_cols=317 Identities=13% Similarity=0.060 Sum_probs=162.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVI 84 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (481)
|+|+++. +++....=+..|.++|.++. |+++.++.+....+.....+......+++. ..+. ..+.+..
T Consensus 28 ~kI~~v~-Gtr~~~~~~a~li~~l~~~~~~~~~~~~~tG~h~~m~~~~~~~~~i~~~~~-l~v~--------~~~~~~~- 96 (403)
T 3ot5_A 28 IKVMSIF-GTRPEAIKMAPLVLALEKEPETFESTVVITAQHREMLDQVLEIFDIKPDID-LDIM--------KKGQTLA- 96 (403)
T ss_dssp EEEEEEE-CSHHHHHHHHHHHHHHHTCTTTEEEEEEECC-----CHHHHHHTTCCCSEE-CCCC--------C-CCCHH-
T ss_pred ceEEEEE-ecChhHHHHHHHHHHHHhCCCCCcEEEEEecCcHHHHHHHHHhcCCCCCcc-cccC--------CCCCCHH-
Confidence 5788777 88878888899999999883 488876666533222111122222111111 1110 1111222
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCcEEEE--cCCCch-HHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccC
Q 011608 85 KIIFMMRESLPALRSSISTLKPRPTALFA--DLFGTE-AFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYG 161 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~D~VI~--D~~~~~-~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (481)
.........+.+++++. +||+|++ |....+ +..+|..+|||++.+....
T Consensus 97 ---~~~~~~~~~l~~~l~~~--kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~agl----------------------- 148 (403)
T 3ot5_A 97 ---EITSRVMNGINEVIAAE--NPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGL----------------------- 148 (403)
T ss_dssp ---HHHHHHHHHHHHHHHHH--CCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCC-----------------------
T ss_pred ---HHHHHHHHHHHHHHHHc--CCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCc-----------------------
Confidence 22344566788889998 9999885 323333 4578999999976432100
Q ss_pred CCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCC--CeeeeCCc
Q 011608 162 RKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLP--PIYPIGPV 239 (481)
Q Consensus 162 ~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p--~~~~vGpl 239 (481)
..... + ... .....+.. ..+.++.++.++-. .. ..+... +.| ++..+|..
T Consensus 149 ----------rs~~~-----~--~~~---p~~~~r~~-~~~~a~~~~~~se~-~~----~~l~~~--Gi~~~~i~vvGn~ 200 (403)
T 3ot5_A 149 ----------RTWNK-----Y--SPF---PEEMNRQL-TGVMADIHFSPTKQ-AK----ENLLAE--GKDPATIFVTGNT 200 (403)
T ss_dssp ----------CCSCT-----T--SST---THHHHHHH-HHHHCSEEEESSHH-HH----HHHHHT--TCCGGGEEECCCH
T ss_pred ----------ccccc-----c--cCC---cHHHHHHH-HHHhcCEEECCCHH-HH----HHHHHc--CCCcccEEEeCCc
Confidence 00000 0 000 00010100 01112333333322 11 111111 233 38888864
Q ss_pred ccCC----CCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCCC
Q 011608 240 VRSM----GSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS-----QQRFIWVVRPPMDNDVSG 310 (481)
Q Consensus 240 ~~~~----~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~ 310 (481)
..+. ... ....+..+.+ +++++++++.|...... +.+..++++++.+ +.++++..+.+.
T Consensus 201 ~~D~~~~~~~~--~~~~~~~~~l---~~~~~vlv~~~r~~~~~-~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~------ 268 (403)
T 3ot5_A 201 AIDALKTTVQK--DYHHPILENL---GDNRLILMTAHRRENLG-EPMQGMFEAVREIVESREDTELVYPMHLNP------ 268 (403)
T ss_dssp HHHHHHHHSCT--TCCCHHHHSC---TTCEEEEECCCCHHHHT-THHHHHHHHHHHHHHHCTTEEEEEECCSCH------
T ss_pred hHHHHHhhhhh--hcchHHHHhc---cCCCEEEEEeCcccccC-cHHHHHHHHHHHHHHhCCCceEEEecCCCH------
Confidence 3220 110 0111222223 34457777765321111 1245566665442 345555532110
Q ss_pred cccccCCCCCCCCCCCCchhHHhhhc-CCCccccccCch---hhhhccccCCceeeecCCchhHHHHHcCcceeeccccc
Q 011608 311 SFFKVGDGSSDGTPDYLPDGFLTRNA-KMGLVVPDWAPQ---VEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYA 386 (481)
Q Consensus 311 ~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~v~~~~pq---~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~ 386 (481)
.+-+...+..+ ..++.+.+++++ ..+++.++ ++|+-.|. .+.||.++|+|+|++|-.+
T Consensus 269 ---------------~~~~~l~~~~~~~~~v~l~~~l~~~~~~~l~~~ad--~vv~~SGg-~~~EA~a~g~PvV~~~~~~ 330 (403)
T 3ot5_A 269 ---------------AVREKAMAILGGHERIHLIEPLDAIDFHNFLRKSY--LVFTDSGG-VQEEAPGMGVPVLVLRDTT 330 (403)
T ss_dssp ---------------HHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHEE--EEEECCHH-HHHHGGGTTCCEEECCSSC
T ss_pred ---------------HHHHHHHHHhCCCCCEEEeCCCCHHHHHHHHHhcC--EEEECCcc-HHHHHHHhCCCEEEecCCC
Confidence 00011111122 247888888863 46777877 78988752 2369999999999997666
Q ss_pred chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 387 EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 387 DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
++.. ++ +.|.|+.+. .+.++|.+++.+++.|+.
T Consensus 331 ~~~e----~v-~~g~~~lv~-------~d~~~l~~ai~~ll~~~~ 363 (403)
T 3ot5_A 331 ERPE----GI-EAGTLKLIG-------TNKENLIKEALDLLDNKE 363 (403)
T ss_dssp SCHH----HH-HHTSEEECC-------SCHHHHHHHHHHHHHCHH
T ss_pred cchh----he-eCCcEEEcC-------CCHHHHHHHHHHHHcCHH
Confidence 6553 22 668887764 289999999999998765
No 29
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.10 E-value=2.2e-09 Score=105.89 Aligned_cols=322 Identities=14% Similarity=0.095 Sum_probs=166.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIK 85 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 85 (481)
++|+++. +++....=+.+|.++|.++.|+++.++.+....+.....+......+++ .+... ..+.....
T Consensus 26 ~ki~~v~-Gtr~~~~~~a~li~~l~~~~~~~~~~~~tG~h~~~~~~~~~~~~i~~~~---~l~~~------~~~~~~~~- 94 (396)
T 3dzc_A 26 KKVLIVF-GTRPEAIKMAPLVQQLCQDNRFVAKVCVTGQHREMLDQVLELFSITPDF---DLNIM------EPGQTLNG- 94 (396)
T ss_dssp EEEEEEE-CSHHHHHHHHHHHHHHHHCTTEEEEEEECCSSSHHHHHHHHHTTCCCSE---ECCCC------CTTCCHHH-
T ss_pred CeEEEEE-eccHhHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHhcCCCCce---eeecC------CCCCCHHH-
Confidence 5777766 8888888899999999986468887666654332211112222211122 11100 11112222
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCcEEEE--cCCCch-HHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccccCC
Q 011608 86 IIFMMRESLPALRSSISTLKPRPTALFA--DLFGTE-AFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHYGR 162 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~D~VI~--D~~~~~-~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 162 (481)
........+.+++++. +||+|++ |....+ +..+|..+|||++.+....
T Consensus 95 ---~~~~~~~~l~~~l~~~--kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~------------------------ 145 (396)
T 3dzc_A 95 ---VTSKILLGMQQVLSSE--QPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGL------------------------ 145 (396)
T ss_dssp ---HHHHHHHHHHHHHHHH--CCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCC------------------------
T ss_pred ---HHHHHHHHHHHHHHhc--CCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCc------------------------
Confidence 2344566788889998 9999885 333323 4578999999976532100
Q ss_pred CCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCC--CeeeeCCcc
Q 011608 163 KQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLP--PIYPIGPVV 240 (481)
Q Consensus 163 ~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p--~~~~vGpl~ 240 (481)
..... .... .....+.. ..+.++.++.++-. .. ..+... +.| ++..+|...
T Consensus 146 ---------rs~~~-------~~~~---~~~~~r~~-~~~~a~~~~~~se~-~~----~~l~~~--G~~~~ki~vvGn~~ 198 (396)
T 3dzc_A 146 ---------RTGNI-------YSPW---PEEGNRKL-TAALTQYHFAPTDT-SR----ANLLQE--NYNAENIFVTGNTV 198 (396)
T ss_dssp ---------CCSCT-------TSST---THHHHHHH-HHHTCSEEEESSHH-HH----HHHHHT--TCCGGGEEECCCHH
T ss_pred ---------ccccc-------ccCC---cHHHHHHH-HHHhcCEEECCCHH-HH----HHHHHc--CCCcCcEEEECCcH
Confidence 00000 0000 01111110 01223444444422 11 111111 233 388888543
Q ss_pred cCCCCCCCCC-------chhhhhhhcc-CCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC-----CCcEEEEEcCCCCCC
Q 011608 241 RSMGSSHMSE-------NSSLLEWLDM-QPTESVIYVSFGGGGTLSANQMIEVAWGLELS-----QQRFIWVVRPPMDND 307 (481)
Q Consensus 241 ~~~~~~~~~~-------~~~~~~~l~~-~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~ 307 (481)
.+........ ..++.+-+.- .+++++|+++.+-..+... .+..+++|++.+ +.++++..+.+.
T Consensus 199 ~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~-~~~~ll~A~~~l~~~~~~~~~v~~~g~~~--- 274 (396)
T 3dzc_A 199 IDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGG-GFERICQALITTAEQHPECQILYPVHLNP--- 274 (396)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTT-HHHHHHHHHHHHHHHCTTEEEEEECCBCH---
T ss_pred HHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchh-HHHHHHHHHHHHHHhCCCceEEEEeCCCh---
Confidence 2210000000 0222222221 1235577777532222222 255666666543 345555432110
Q ss_pred CCCcccccCCCCCCCCCCCCchhHHhhhc-CCCccccccCc---hhhhhccccCCceeeecCCchhHHHHHcCcceeecc
Q 011608 308 VSGSFFKVGDGSSDGTPDYLPDGFLTRNA-KMGLVVPDWAP---QVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWP 383 (481)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~v~~~~p---q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P 383 (481)
.+-+.+.+..+ ..++.+.++++ ...+++.++ ++|+-.| |.+.||.++|+|+|+..
T Consensus 275 ------------------~~~~~l~~~~~~~~~v~~~~~lg~~~~~~l~~~ad--~vv~~SG-g~~~EA~a~G~PvV~~~ 333 (396)
T 3dzc_A 275 ------------------NVREPVNKLLKGVSNIVLIEPQQYLPFVYLMDRAH--IILTDSG-GIQEEAPSLGKPVLVMR 333 (396)
T ss_dssp ------------------HHHHHHHHHTTTCTTEEEECCCCHHHHHHHHHHCS--EEEESCS-GGGTTGGGGTCCEEECC
T ss_pred ------------------HHHHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhcC--EEEECCc-cHHHHHHHcCCCEEEcc
Confidence 00011222111 24777767664 346777877 8999887 66679999999999975
Q ss_pred cccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 384 LYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 384 ~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
-..+++ .++ +.|.++.+. . ++++|.+++.+++.|+.
T Consensus 334 ~~~~~~----e~v-~~G~~~lv~-----~--d~~~l~~ai~~ll~d~~ 369 (396)
T 3dzc_A 334 ETTERP----EAV-AAGTVKLVG-----T--NQQQICDALSLLLTDPQ 369 (396)
T ss_dssp SSCSCH----HHH-HHTSEEECT-----T--CHHHHHHHHHHHHHCHH
T ss_pred CCCcch----HHH-HcCceEEcC-----C--CHHHHHHHHHHHHcCHH
Confidence 555543 232 568776654 2 69999999999998765
No 30
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.09 E-value=6.9e-08 Score=94.78 Aligned_cols=314 Identities=9% Similarity=-0.014 Sum_probs=170.0
Q ss_pred CCcEEEEEcC--C--CccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCC
Q 011608 4 TKTHIALLAS--P--GMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDAD 79 (481)
Q Consensus 4 ~~~~vvl~~~--p--~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 79 (481)
.+|+|++++. + ..|.-.-...|++.| + ||+|++++......... .+... .++.+..++.......
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~-g~~v~v~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~---- 71 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--D-PESIVVFASTQNAEEAH-AYDKT---LDYEVIRWPRSVMLPT---- 71 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTS--C-GGGEEEEEECSSHHHHH-HHHTT---CSSEEEEESSSSCCSC----
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHh--c-CCeEEEEECCCCccchh-hhccc---cceEEEEccccccccc----
Confidence 3589999975 3 468888999999999 7 99999999885543111 12222 2566777664221111
Q ss_pred ccHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCch--HHHHHHHhCCceEEEec-hhHHHHHHHhhcccchhhhh
Q 011608 80 ASIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTE--AFQIADEFEMLKYVYIA-SNAWFLAATIYFPTIDKRLQ 156 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~--~~~~A~~~giP~v~~~~-~~~~~~~~~~~~p~~~~~~~ 156 (481)
. .....+..++++. +||+|++...... ...+++.+++|.+++.. ......
T Consensus 72 ---~--------~~~~~l~~~~~~~--~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------------- 124 (394)
T 3okp_A 72 ---P--------TTAHAMAEIIRER--EIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGW-------------- 124 (394)
T ss_dssp ---H--------HHHHHHHHHHHHT--TCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHHH--------------
T ss_pred ---h--------hhHHHHHHHHHhc--CCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhhh--------------
Confidence 0 2234566777777 9999997644333 44568899998555332 211000
Q ss_pred ccccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeee
Q 011608 157 EEHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPI 236 (481)
Q Consensus 157 ~~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~v 236 (481)
.......... ....+.++.++..|-...+ .....+. ...++..|
T Consensus 125 -----------------------------~~~~~~~~~~--~~~~~~~d~ii~~s~~~~~-~~~~~~~----~~~~~~vi 168 (394)
T 3okp_A 125 -----------------------------SMLPGSRQSL--RKIGTEVDVLTYISQYTLR-RFKSAFG----SHPTFEHL 168 (394)
T ss_dssp -----------------------------TTSHHHHHHH--HHHHHHCSEEEESCHHHHH-HHHHHHC----SSSEEEEC
T ss_pred -----------------------------hhcchhhHHH--HHHHHhCCEEEEcCHHHHH-HHHHhcC----CCCCeEEe
Confidence 0000011111 1123556777766643222 1111111 01235555
Q ss_pred CCcccCCC-CC-CCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCC
Q 011608 237 GPVVRSMG-SS-HMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS-----QQRFIWVVRPPMDNDVS 309 (481)
Q Consensus 237 Gpl~~~~~-~~-~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~ 309 (481)
.+.+.... .+ ......++.+-+.- +++..+++..|+... ...+..++++++.+ +.+++++ +.+
T Consensus 169 ~ngv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~~~~l~i~-G~g------ 238 (394)
T 3okp_A 169 PSGVDVKRFTPATPEDKSATRKKLGF-TDTTPVIACNSRLVP--RKGQDSLIKAMPQVIAARPDAQLLIV-GSG------ 238 (394)
T ss_dssp CCCBCTTTSCCCCHHHHHHHHHHTTC-CTTCCEEEEESCSCG--GGCHHHHHHHHHHHHHHSTTCEEEEE-CCC------
T ss_pred cCCcCHHHcCCCCchhhHHHHHhcCC-CcCceEEEEEecccc--ccCHHHHHHHHHHHHhhCCCeEEEEE-cCc------
Confidence 54443211 11 00011222222222 223357777887532 22345555555443 3444443 221
Q ss_pred CcccccCCCCCCCCCCCCchhHHhhhc--CCCccccccCchhh---hhccccCCceee-----------ecCCchhHHHH
Q 011608 310 GSFFKVGDGSSDGTPDYLPDGFLTRNA--KMGLVVPDWAPQVE---ILGHASVGGFLS-----------HCGWNSTLESI 373 (481)
Q Consensus 310 ~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~v~~~~pq~~---lL~~~~~~~~I~-----------HgG~~s~~eal 373 (481)
...+.+.+... ..++.+.+|+|+.+ ++..++ ++|. -|.-+++.||+
T Consensus 239 ----------------~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad--~~v~ps~~~~~~~~~e~~~~~~~Ea~ 300 (394)
T 3okp_A 239 ----------------RYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAAD--IFAMPARTRGGGLDVEGLGIVYLEAQ 300 (394)
T ss_dssp ----------------TTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCS--EEEECCCCBGGGTBCCSSCHHHHHHH
T ss_pred ----------------hHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCC--EEEecCccccccccccccCcHHHHHH
Confidence 11123333221 13788889997654 677777 6665 55567899999
Q ss_pred HcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 374 VNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 374 ~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
++|+|+|+.+.. .....+ ++ |.|..++. -+.+++.++|.+++.|++
T Consensus 301 a~G~PvI~~~~~----~~~e~i-~~-~~g~~~~~------~d~~~l~~~i~~l~~~~~ 346 (394)
T 3okp_A 301 ACGVPVIAGTSG----GAPETV-TP-ATGLVVEG------SDVDKLSELLIELLDDPI 346 (394)
T ss_dssp HTTCCEEECSST----TGGGGC-CT-TTEEECCT------TCHHHHHHHHHHHHTCHH
T ss_pred HcCCCEEEeCCC----ChHHHH-hc-CCceEeCC------CCHHHHHHHHHHHHhCHH
Confidence 999999997653 333333 23 47777642 379999999999998754
No 31
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.02 E-value=5.3e-08 Score=96.05 Aligned_cols=309 Identities=11% Similarity=0.025 Sum_probs=161.3
Q ss_pred CCcEEEEEcCC---C-ccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCC
Q 011608 4 TKTHIALLASP---G-MGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDAD 79 (481)
Q Consensus 4 ~~~~vvl~~~p---~-~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 79 (481)
.+|+|+++..- . .|.-.-...+++.|.++ ||+|++++........... .... + .++.++...
T Consensus 19 ~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~-~~~~---~-~~~~~~~~~-------- 84 (406)
T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDA-GHEVSVLAPASPHVKLPDY-VVSG---G-KAVPIPYNG-------- 84 (406)
T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHT-TCEEEEEESCCTTSCCCTT-EEEC---C-CCC--------------
T ss_pred CcceEEEEeccCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCccccCCcc-cccC---C-cEEeccccC--------
Confidence 35899999842 2 56678899999999999 9999999987443210000 0000 0 111111000
Q ss_pred ccHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCch--HHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhc
Q 011608 80 ASIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTE--AFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQE 157 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 157 (481)
.. ..+ .+.......+..++++. +||+|++...... +..+++..++|++.......
T Consensus 85 -~~-~~~-~~~~~~~~~l~~~l~~~--~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~------------------ 141 (406)
T 2gek_A 85 -SV-ARL-RFGPATHRKVKKWIAEG--DFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTST------------------ 141 (406)
T ss_dssp ---------CCHHHHHHHHHHHHHH--CCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCC------------------
T ss_pred -Cc-ccc-cccHHHHHHHHHHHHhc--CCCEEEECCccchHHHHHHHHhcCCCEEEEEcCcc------------------
Confidence 00 000 00011224566677777 9999987654332 44667778999887544210
Q ss_pred cccCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHh-hhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeee
Q 011608 158 EHYGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIG-LEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPI 236 (481)
Q Consensus 158 ~~~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~v 236 (481)
+.. .....+.+.. ....+++.++..|-...+ .+...++ ..++ .|
T Consensus 142 -----------~~~-----------------~~~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~~~~~~~-~~~~-vi 186 (406)
T 2gek_A 142 -----------TKS-----------------LTLSVFQGILRPYHEKIIGRIAVSDLARR-----WQMEALG-SDAV-EI 186 (406)
T ss_dssp -----------CSH-----------------HHHHHHHSTTHHHHTTCSEEEESSHHHHH-----HHHHHHS-SCEE-EC
T ss_pred -----------hhh-----------------hhHHHHHHHHHHHHhhCCEEEECCHHHHH-----HHHHhcC-CCcE-Ee
Confidence 000 0000000001 234566777766633222 1111111 1134 44
Q ss_pred CCcccCCC-CCCCCCchhhhhhhccCCCCcEEEEEeCCC-CCCChHHHHHHHHHHHhC-----CCcEEEEEcCCCCCCCC
Q 011608 237 GPVVRSMG-SSHMSENSSLLEWLDMQPTESVIYVSFGGG-GTLSANQMIEVAWGLELS-----QQRFIWVVRPPMDNDVS 309 (481)
Q Consensus 237 Gpl~~~~~-~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~-~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~ 309 (481)
.+.+.... .+. ..... + ++...+++..|+. .. ......++++++.+ +.++++ ++..
T Consensus 187 ~~~v~~~~~~~~-~~~~~----~---~~~~~~i~~~G~~~~~--~Kg~~~li~a~~~l~~~~~~~~l~i-~G~~------ 249 (406)
T 2gek_A 187 PNGVDVASFADA-PLLDG----Y---PREGRTVLFLGRYDEP--RKGMAVLLAALPKLVARFPDVEILI-VGRG------ 249 (406)
T ss_dssp CCCBCHHHHHTC-CCCTT----C---SCSSCEEEEESCTTSG--GGCHHHHHHHHHHHHTTSTTCEEEE-ESCS------
T ss_pred cCCCChhhcCCC-chhhh----c---cCCCeEEEEEeeeCcc--ccCHHHHHHHHHHHHHHCCCeEEEE-EcCC------
Confidence 43332100 000 00000 0 1112466777875 32 23355555555543 334433 3211
Q ss_pred CcccccCCCCCCCCCCCCchhHHhhhc--CCCccccccCchh---hhhccccCCceee----ecCCc-hhHHHHHcCcce
Q 011608 310 GSFFKVGDGSSDGTPDYLPDGFLTRNA--KMGLVVPDWAPQV---EILGHASVGGFLS----HCGWN-STLESIVNGVPL 379 (481)
Q Consensus 310 ~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~v~~~~pq~---~lL~~~~~~~~I~----HgG~~-s~~eal~~GvP~ 379 (481)
.. +.+.+... ..++.+.+|+|+. +++..++ ++|. +.|++ ++.||+++|+|+
T Consensus 250 ----------------~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad--v~v~ps~~~e~~~~~~~Ea~a~G~Pv 310 (406)
T 2gek_A 250 ----------------DE-DELREQAGDLAGHLRFLGQVDDATKASAMRSAD--VYCAPHLGGESFGIVLVEAMAAGTAV 310 (406)
T ss_dssp ----------------CH-HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSS--EEEECCCSCCSSCHHHHHHHHHTCEE
T ss_pred ----------------cH-HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCC--EEEecCCCCCCCchHHHHHHHcCCCE
Confidence 11 33433332 3478888999874 6788877 4553 34444 899999999999
Q ss_pred eecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 380 IVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 380 v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
|+.+. ......+ ++.+.|...+. -+.+++.++|.+++.|+.
T Consensus 311 I~~~~----~~~~e~i-~~~~~g~~~~~------~d~~~l~~~i~~l~~~~~ 351 (406)
T 2gek_A 311 VASDL----DAFRRVL-ADGDAGRLVPV------DDADGMAAALIGILEDDQ 351 (406)
T ss_dssp EECCC----HHHHHHH-TTTTSSEECCT------TCHHHHHHHHHHHHHCHH
T ss_pred EEecC----CcHHHHh-cCCCceEEeCC------CCHHHHHHHHHHHHcCHH
Confidence 99765 4455555 45567777642 378999999999998765
No 32
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=98.99 E-value=5.1e-07 Score=89.80 Aligned_cols=92 Identities=11% Similarity=0.018 Sum_probs=62.1
Q ss_pred CCccccccCchhh---hhccccCCceee----ecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 338 MGLVVPDWAPQVE---ILGHASVGGFLS----HCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 338 ~~~~v~~~~pq~~---lL~~~~~~~~I~----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
..+.+.+|+|+.+ ++..++ ++|. -|--+++.||+++|+|+|+... ......+ ..|.|..++.
T Consensus 311 ~~~~~~g~~~~~~~~~~~~~ad--v~v~ps~~e~~~~~~~EAma~G~Pvi~s~~----~~~~e~~--~~~~g~~~~~--- 379 (439)
T 3fro_A 311 NVKVITEMLSREFVRELYGSVD--FVIIPSYFEPFGLVALEAMCLGAIPIASAV----GGLRDII--TNETGILVKA--- 379 (439)
T ss_dssp TEEEECSCCCHHHHHHHHTTCS--EEEECBSCCSSCHHHHHHHHTTCEEEEESS----THHHHHC--CTTTCEEECT---
T ss_pred CEEEEcCCCCHHHHHHHHHHCC--EEEeCCCCCCccHHHHHHHHCCCCeEEcCC----CCcceeE--EcCceEEeCC---
Confidence 3455678898854 566777 5553 2334689999999999999643 3444444 3467877653
Q ss_pred CCccCHHHHHHHHHHHhc-CCc-hHHHHHHHHHHH
Q 011608 411 ENLVKREEIEMMVRRILV-DKE-GQALRSRVKELK 443 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~-~~~-~~~~r~~a~~l~ 443 (481)
-+.+++.++|.+++. |++ ...+.+++++..
T Consensus 380 ---~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~ 411 (439)
T 3fro_A 380 ---GDPGELANAILKALELSRSDLSKFRENCKKRA 411 (439)
T ss_dssp ---TCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 489999999999998 644 344555554443
No 33
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=98.94 E-value=1.1e-06 Score=86.31 Aligned_cols=318 Identities=10% Similarity=0.053 Sum_probs=161.7
Q ss_pred cEEEEEcCCCc-cCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHH
Q 011608 6 THIALLASPGM-GHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVI 84 (481)
Q Consensus 6 ~~vvl~~~p~~-GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (481)
+.+....+|.. |.-.-...|+++|.++ ||+|++++...... ..... .++.+..++....... .. . ..
T Consensus 16 ~~~~~~~~p~~GG~~~~~~~la~~L~~~-G~~V~v~~~~~~~~-----~~~~~--~~i~~~~~~~~~~~~~-~~-~-~~- 83 (394)
T 2jjm_A 16 LKIGITCYPSVGGSGVVGTELGKQLAER-GHEIHFITSGLPFR-----LNKVY--PNIYFHEVTVNQYSVF-QY-P-PY- 83 (394)
T ss_dssp CEEEEECCC--CHHHHHHHHHHHHHHHT-TCEEEEECSSCC---------CCC--TTEEEECCCCC----C-CS-C-CH-
T ss_pred eeeehhcCCCCCCHHHHHHHHHHHHHhC-CCEEEEEeCCCCCc-----ccccC--CceEEEeccccccccc-cc-c-cc-
Confidence 45777777654 5667788999999999 99999999863211 11111 3566666653222111 00 0 00
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCch--HHHHHHHh---CCceEEEechhHHHHHHHhhcccchhhhhccc
Q 011608 85 KIIFMMRESLPALRSSISTLKPRPTALFADLFGTE--AFQIADEF---EMLKYVYIASNAWFLAATIYFPTIDKRLQEEH 159 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~--~~~~A~~~---giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (481)
. ......+..++++. +||+|++...... ...++.++ ++|+|.........
T Consensus 84 ~-----~~~~~~l~~~l~~~--~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~------------------ 138 (394)
T 2jjm_A 84 D-----LALASKMAEVAQRE--NLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDIT------------------ 138 (394)
T ss_dssp H-----HHHHHHHHHHHHHH--TCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHH------------------
T ss_pred c-----HHHHHHHHHHHHHc--CCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCccc------------------
Confidence 0 01123456677777 9999998743332 23344443 58987754432100
Q ss_pred cCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCCCeeeeCCc
Q 011608 160 YGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLPPIYPIGPV 239 (481)
Q Consensus 160 ~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p~~~~vGpl 239 (481)
..+.. . .+..+. ....+.++.++..|-...+ .+...+....++..|...
T Consensus 139 --------~~~~~-------------~---~~~~~~--~~~~~~ad~ii~~s~~~~~-----~~~~~~~~~~~~~vi~ng 187 (394)
T 2jjm_A 139 --------VLGSD-------------P---SLNNLI--RFGIEQSDVVTAVSHSLIN-----ETHELVKPNKDIQTVYNF 187 (394)
T ss_dssp --------TTTTC-------------T---TTHHHH--HHHHHHSSEEEESCHHHHH-----HHHHHTCCSSCEEECCCC
T ss_pred --------ccCCC-------------H---HHHHHH--HHHHhhCCEEEECCHHHHH-----HHHHhhCCcccEEEecCC
Confidence 00000 0 001111 1123456777666643221 222221111145555544
Q ss_pred ccCCCCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC----CCcEEEEEcCCCCCCCCCccccc
Q 011608 240 VRSMGSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS----QQRFIWVVRPPMDNDVSGSFFKV 315 (481)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~ 315 (481)
+....-. .....++.+-+.-. ++..+++..|+... ...+..++++++.+ +.++++ ++.+
T Consensus 188 v~~~~~~-~~~~~~~~~~~~~~-~~~~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~~~l~i-~G~g------------ 250 (394)
T 2jjm_A 188 IDERVYF-KRDMTQLKKEYGIS-ESEKILIHISNFRK--VKRVQDVVQAFAKIVTEVDAKLLL-VGDG------------ 250 (394)
T ss_dssp CCTTTCC-CCCCHHHHHHTTCC----CEEEEECCCCG--GGTHHHHHHHHHHHHHSSCCEEEE-ECCC------------
T ss_pred ccHHhcC-CcchHHHHHHcCCC-CCCeEEEEeecccc--ccCHHHHHHHHHHHHhhCCCEEEE-ECCc------------
Confidence 4321111 01122333323211 22246667787532 23355555555442 344333 3221
Q ss_pred CCCCCCCCCCCCchhHHhhhc----CCCccccccCch-hhhhccccCCcee----eecCCchhHHHHHcCcceeeccccc
Q 011608 316 GDGSSDGTPDYLPDGFLTRNA----KMGLVVPDWAPQ-VEILGHASVGGFL----SHCGWNSTLESIVNGVPLIVWPLYA 386 (481)
Q Consensus 316 ~~~~~~~~~~~lp~~~~~~~~----~~~~~v~~~~pq-~~lL~~~~~~~~I----~HgG~~s~~eal~~GvP~v~~P~~~ 386 (481)
...+.+.+..+ ..++.+.++..+ .+++..++ ++| .-|..+++.||+++|+|+|+.+..
T Consensus 251 ----------~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~ad--v~v~ps~~e~~~~~~~EAma~G~PvI~~~~~- 317 (394)
T 2jjm_A 251 ----------PEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSD--LMLLLSEKESFGLVLLEAMACGVPCIGTRVG- 317 (394)
T ss_dssp ----------TTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCS--EEEECCSCCSCCHHHHHHHHTTCCEEEECCT-
T ss_pred ----------hHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCC--EEEeccccCCCchHHHHHHhcCCCEEEecCC-
Confidence 11123333322 236777777543 56787877 666 456667999999999999997753
Q ss_pred chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 387 EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 387 DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
.....+ ++-+.|..++. -+.+++.++|.+++.|++
T Consensus 318 ---~~~e~v-~~~~~g~~~~~------~d~~~la~~i~~l~~~~~ 352 (394)
T 2jjm_A 318 ---GIPEVI-QHGDTGYLCEV------GDTTGVADQAIQLLKDEE 352 (394)
T ss_dssp ---TSTTTC-CBTTTEEEECT------TCHHHHHHHHHHHHHCHH
T ss_pred ---ChHHHh-hcCCceEEeCC------CCHHHHHHHHHHHHcCHH
Confidence 233333 34456776642 378999999999998754
No 34
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=98.94 E-value=3.8e-07 Score=92.79 Aligned_cols=81 Identities=16% Similarity=0.040 Sum_probs=57.8
Q ss_pred CCccccccCchh---hhhccc----cCCceee---e-cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEecc
Q 011608 338 MGLVVPDWAPQV---EILGHA----SVGGFLS---H-CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPN 406 (481)
Q Consensus 338 ~~~~v~~~~pq~---~lL~~~----~~~~~I~---H-gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~ 406 (481)
.++.+.+++|+. +++..+ + ++|. + |--+++.||+++|+|+|+... ......+ ++-..|..++
T Consensus 335 ~~V~~~G~v~~~~~~~~~~~a~~~~d--v~v~pS~~Eg~~~~~lEAma~G~PvI~s~~----~g~~e~v-~~~~~g~l~~ 407 (499)
T 2r60_A 335 GKVSMFPLNSQQELAGCYAYLASKGS--VFALTSFYEPFGLAPVEAMASGLPAVVTRN----GGPAEIL-DGGKYGVLVD 407 (499)
T ss_dssp TTEEEEECCSHHHHHHHHHHHHHTTC--EEEECCSCBCCCSHHHHHHHTTCCEEEESS----BHHHHHT-GGGTSSEEEC
T ss_pred ceEEECCCCCHHHHHHHHHhcCcCCC--EEEECcccCCCCcHHHHHHHcCCCEEEecC----CCHHHHh-cCCceEEEeC
Confidence 468888999765 466677 6 5653 2 334589999999999999764 3344444 4545677764
Q ss_pred ccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 407 EMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 407 ~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
. -+.++++++|.+++.|+.
T Consensus 408 ~------~d~~~la~~i~~ll~~~~ 426 (499)
T 2r60_A 408 P------EDPEDIARGLLKAFESEE 426 (499)
T ss_dssp T------TCHHHHHHHHHHHHSCHH
T ss_pred C------CCHHHHHHHHHHHHhCHH
Confidence 2 378999999999998754
No 35
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=98.94 E-value=1.3e-06 Score=85.03 Aligned_cols=143 Identities=13% Similarity=0.147 Sum_probs=90.7
Q ss_pred cEEEEEeCCCCCCChHHHHHHHHHHHhCCC----cE-EEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhh---c
Q 011608 265 SVIYVSFGGGGTLSANQMIEVAWGLELSQQ----RF-IWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRN---A 336 (481)
Q Consensus 265 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~~----~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~---~ 336 (481)
..+++..|+... ......++++++.... .+ ++.++.+ . .+.+.+.. +
T Consensus 196 ~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~g----------------------~-~~~~~~~~~~~~ 250 (374)
T 2iw1_A 196 QNLLLQVGSDFG--RKGVDRSIEALASLPESLRHNTLLFVVGQD----------------------K-PRKFEALAEKLG 250 (374)
T ss_dssp CEEEEEECSCTT--TTTHHHHHHHHHTSCHHHHHTEEEEEESSS----------------------C-CHHHHHHHHHHT
T ss_pred CeEEEEeccchh--hcCHHHHHHHHHHhHhccCCceEEEEEcCC----------------------C-HHHHHHHHHHcC
Confidence 367777887533 3456777888877632 22 3333321 1 12333222 1
Q ss_pred -CCCccccccCch-hhhhccccCCceee----ecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 337 -KMGLVVPDWAPQ-VEILGHASVGGFLS----HCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 337 -~~~~~v~~~~pq-~~lL~~~~~~~~I~----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
..++.+.++..+ .+++..++ ++|. -|.-+++.||+++|+|+|+.+. ..+...+ ++.+.|..++
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~ad--~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~---- 319 (374)
T 2iw1_A 251 VRSNVHFFSGRNDVSELMAAAD--LLLHPAYQEAAGIVLLEAITAGLPVLTTAV----CGYAHYI-ADANCGTVIA---- 319 (374)
T ss_dssp CGGGEEEESCCSCHHHHHHHCS--EEEECCSCCSSCHHHHHHHHHTCCEEEETT----STTTHHH-HHHTCEEEEC----
T ss_pred CCCcEEECCCcccHHHHHHhcC--EEEeccccCCcccHHHHHHHCCCCEEEecC----CCchhhh-ccCCceEEeC----
Confidence 236777777654 56787877 5664 4667789999999999999765 3455566 5778888775
Q ss_pred CCccCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH
Q 011608 411 ENLVKREEIEMMVRRILVDKE-GQALRSRVKELKH 444 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~~-~~~~r~~a~~l~~ 444 (481)
..-+.+++.++|.+++.|++ ...+.+++++..+
T Consensus 320 -~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 353 (374)
T 2iw1_A 320 -EPFSQEQLNEVLRKALTQSPLRMAWAENARHYAD 353 (374)
T ss_dssp -SSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 23589999999999998754 2334444444433
No 36
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=98.91 E-value=3.9e-08 Score=95.98 Aligned_cols=321 Identities=15% Similarity=0.085 Sum_probs=161.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCceEE-EecCCCCCCCCCCCCccH
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLFNI-VSLPPVDISALLDADASI 82 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~ 82 (481)
+|+|++++ ++.++......++++|.+++ ||+|+++++....+.....+... ++.. ..+... ......
T Consensus 8 ~mkIl~v~-~~~~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~ 76 (375)
T 3beo_A 8 RLKVMTIF-GTRPEAIKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIF----GITPDFDLNIM------KDRQTL 76 (375)
T ss_dssp CEEEEEEE-CSHHHHHHHHHHHHHHTTCTTTEEEEEEECCSSSHHHHHHHHHH----TCCCSEECCCC------CTTCCH
T ss_pred CceEEEEe-cCcHHHHHHHHHHHHHHhCCCCCCeEEEEcCCCHHHHHHHHHHc----CCCCccccccC------CCcccH
Confidence 48999997 55778888899999998862 38888777664433221111111 1111 111110 011111
Q ss_pred HHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCch---HHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhccc
Q 011608 83 VIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTE---AFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEH 159 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~---~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 159 (481)
... .......+..++++. +||+|++...... +..+|+..++|++...... .
T Consensus 77 ~~~----~~~~~~~l~~~l~~~--~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~-------------~------- 130 (375)
T 3beo_A 77 IDI----TTRGLEGLDKVMKEA--KPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGL-------------R------- 130 (375)
T ss_dssp HHH----HHHHHHHHHHHHHHH--CCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCC-------------C-------
T ss_pred HHH----HHHHHHHHHHHHHHh--CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccc-------------c-------
Confidence 111 122234566778888 9999998432222 2356788999987532110 0
Q ss_pred cCCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCC--CeeeeC
Q 011608 160 YGRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLP--PIYPIG 237 (481)
Q Consensus 160 ~~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p--~~~~vG 237 (481)
..... ... ...+.+. ...+.++.++..|-... +.+... +.+ ++..||
T Consensus 131 -------~~~~~-------------~~~---~~~~~~~-~~~~~~d~ii~~s~~~~-----~~~~~~--g~~~~~i~vi~ 179 (375)
T 3beo_A 131 -------TWDKY-------------SPY---PEEMNRQ-LTGVMADLHFSPTAKSA-----TNLQKE--NKDESRIFITG 179 (375)
T ss_dssp -------CSCTT-------------SST---THHHHHH-HHHHHCSEEEESSHHHH-----HHHHHT--TCCGGGEEECC
T ss_pred -------ccccc-------------CCC---hhHhhhh-HHhhhhheeeCCCHHHH-----HHHHHc--CCCcccEEEEC
Confidence 00000 000 0001111 01122556655543222 111111 122 366777
Q ss_pred Cc-ccCC-CCCCCCCchhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhC---CCcEEEEEcCCCCCCCCCcc
Q 011608 238 PV-VRSM-GSSHMSENSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELS---QQRFIWVVRPPMDNDVSGSF 312 (481)
Q Consensus 238 pl-~~~~-~~~~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~ 312 (481)
.. +... ..+......++.+-+ +++++++++.|...... ..+..++++++.+ ...+.+.++.+..
T Consensus 180 n~~~d~~~~~~~~~~~~~~~~~~---~~~~~vl~~~gr~~~~~-K~~~~li~a~~~l~~~~~~~~~i~~~g~~------- 248 (375)
T 3beo_A 180 NTAIDALKTTVKETYSHPVLEKL---GNNRLVLMTAHRRENLG-EPMRNMFRAIKRLVDKHEDVQVVYPVHMN------- 248 (375)
T ss_dssp CHHHHHHHHHCCSSCCCHHHHTT---TTSEEEEEECCCGGGTT-HHHHHHHHHHHHHHHHCTTEEEEEECCSC-------
T ss_pred ChhHhhhhhhhhhhhhHHHHHhc---cCCCeEEEEecccccch-hHHHHHHHHHHHHHhhCCCeEEEEeCCCC-------
Confidence 54 2110 000000112222222 23456777777643221 3356666666543 1123233321100
Q ss_pred cccCCCCCCCCCCCCchhHHhhhc-CCCccccccCch---hhhhccccCCceeeecCCchhHHHHHcCcceeecccccch
Q 011608 313 FKVGDGSSDGTPDYLPDGFLTRNA-KMGLVVPDWAPQ---VEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLYAEQ 388 (481)
Q Consensus 313 ~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~v~~~~pq---~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ 388 (481)
..+-+...+..+ .+++.+.+++++ ..++..++ +||+..| +.+.||+++|+|+|+....+..
T Consensus 249 ------------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad--~~v~~sg-~~~lEA~a~G~Pvi~~~~~~~~ 313 (375)
T 3beo_A 249 ------------PVVRETANDILGDYGRIHLIEPLDVIDFHNVAARSY--LMLTDSG-GVQEEAPSLGVPVLVLRDTTER 313 (375)
T ss_dssp ------------HHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCS--EEEECCH-HHHHHHHHHTCCEEECSSCCSC
T ss_pred ------------HHHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCc--EEEECCC-ChHHHHHhcCCCEEEecCCCCC
Confidence 001111222222 247887677765 45677777 7888764 4588999999999998543332
Q ss_pred hhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 389 KMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 389 ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
. .+. +.|.|..++ . +.++|.++|.+++.|++
T Consensus 314 ---~-e~v-~~g~g~~v~-----~--d~~~la~~i~~ll~~~~ 344 (375)
T 3beo_A 314 ---P-EGI-EAGTLKLAG-----T--DEETIFSLADELLSDKE 344 (375)
T ss_dssp ---H-HHH-HTTSEEECC-----S--CHHHHHHHHHHHHHCHH
T ss_pred ---c-eee-cCCceEEcC-----C--CHHHHHHHHHHHHhChH
Confidence 2 232 557887764 2 88999999999998765
No 37
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=98.87 E-value=1.2e-07 Score=92.65 Aligned_cols=314 Identities=13% Similarity=0.086 Sum_probs=166.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCch-hhhhh-ccCCCC-CCceEEEecCCCCCCCCCCCCccH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTS-TVQSQ-LRNLPN-PHLFNIVSLPPVDISALLDADASI 82 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~-~~~~~-~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~ 82 (481)
++|+++. +++-.+.-+.+|.++|.++ +++.++.+....+ .+... +..+.. .+++. +.. .+.+.
T Consensus 10 ~~~~~v~-GtRpe~~k~~p~~~~l~~~--~~~~~~~tgqh~~~~~~~~~~~~~~i~~~~~~---l~~--------~~~~~ 75 (385)
T 4hwg_A 10 LKVMTIV-GTRPELIKLCCVISEFDKH--TKHILVHTGQNYAYELNQVFFDDMGIRKPDYF---LEV--------AADNT 75 (385)
T ss_dssp CEEEEEE-CSHHHHHHHHHHHHHHHHH--SEEEEEECSCHHHHHHTHHHHC-CCCCCCSEE---CCC--------CCCCS
T ss_pred hheeEEE-EcCHhHHHHHHHHHHHHhc--CCEEEEEeCCCCChhHHHHHHhhCCCCCCcee---cCC--------CCCCH
Confidence 4555554 9999999999999999875 7877777764322 22221 222221 11111 110 11122
Q ss_pred HHHHHHHHHHhhHHHHHHHhhcCCCCcEEEE--cCCCchHHHHHHHhCCceEEEechhHHHHHHHhhcccchhhhhcccc
Q 011608 83 VIKIIFMMRESLPALRSSISTLKPRPTALFA--DLFGTEAFQIADEFEMLKYVYIASNAWFLAATIYFPTIDKRLQEEHY 160 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~--D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 160 (481)
..........+.+.+++. +||+|++ |....+++.+|.++|||++.+....
T Consensus 76 ----~~~~~~~~~~l~~~l~~~--kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eagl---------------------- 127 (385)
T 4hwg_A 76 ----AKSIGLVIEKVDEVLEKE--KPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAGN---------------------- 127 (385)
T ss_dssp ----HHHHHHHHHHHHHHHHHH--CCSEEEEESCSGGGGGHHHHHHTTCCEEEESCCC----------------------
T ss_pred ----HHHHHHHHHHHHHHHHhc--CCcEEEEECCchHHHHHHHHHHhCCCEEEEeCCC----------------------
Confidence 333444567788889999 9999874 5555556778999999976433210
Q ss_pred CCCCCccCCCCcccCcccccccccCCCchhHHHHHHHhhhhcccceEEecChhhhcHHHHHHHHhccCCCC--CeeeeCC
Q 011608 161 GRKQPLMIPGCRSVRFQDTLEAFTDPKDQLFDEYLRIGLEMVTADGILINTWEDLEPTTLASLRDGISKLP--PIYPIGP 238 (481)
Q Consensus 161 ~~~~~~~~pg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~p--~~~~vGp 238 (481)
.... .+. .+...+.. ..+-++.++.++- +.... .... +.| +++.+|.
T Consensus 128 -----------rs~~---------~~~---pee~nR~~-~~~~a~~~~~~te-~~~~~---l~~~---G~~~~~I~vtGn 176 (385)
T 4hwg_A 128 -----------RCFD---------QRV---PEEINRKI-IDHISDVNITLTE-HARRY---LIAE---GLPAELTFKSGS 176 (385)
T ss_dssp -----------CCSC---------TTS---THHHHHHH-HHHHCSEEEESSH-HHHHH---HHHT---TCCGGGEEECCC
T ss_pred -----------cccc---------ccC---cHHHHHHH-HHhhhceeecCCH-HHHHH---HHHc---CCCcCcEEEECC
Confidence 0000 000 00010100 0011233333332 21111 1111 233 3888895
Q ss_pred cccCCCCC--CCCCchhhhhhhccCCCCcEEEEEeCCCCCCC-hHHHHHHHHHHHhC----CCcEEEEEcCCCCCCCCCc
Q 011608 239 VVRSMGSS--HMSENSSLLEWLDMQPTESVIYVSFGGGGTLS-ANQMIEVAWGLELS----QQRFIWVVRPPMDNDVSGS 311 (481)
Q Consensus 239 l~~~~~~~--~~~~~~~~~~~l~~~~~~~vv~vs~GS~~~~~-~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~ 311 (481)
...+.... .....+++.+-+.-. ++++|+++.|.....+ .+.+..++++++.. +..+++.....
T Consensus 177 p~~D~~~~~~~~~~~~~~~~~lgl~-~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~p~-------- 247 (385)
T 4hwg_A 177 HMPEVLDRFMPKILKSDILDKLSLT-PKQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTHPR-------- 247 (385)
T ss_dssp SHHHHHHHHHHHHHHCCHHHHTTCC-TTSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEECHH--------
T ss_pred chHHHHHHhhhhcchhHHHHHcCCC-cCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECChH--------
Confidence 43221000 000112233333322 2458999988754433 24566777777653 56666654210
Q ss_pred ccccCCCCCCCCCCCCchhHHhh---hc-CCCccccccCc---hhhhhccccCCceeeecCCchhHHHHHcCcceeeccc
Q 011608 312 FFKVGDGSSDGTPDYLPDGFLTR---NA-KMGLVVPDWAP---QVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPL 384 (481)
Q Consensus 312 ~~~~~~~~~~~~~~~lp~~~~~~---~~-~~~~~v~~~~p---q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~ 384 (481)
+-+...+. .. ..++.+.+.++ ...++++++ ++|+-.|. .+.||.++|+|+|+++.
T Consensus 248 ---------------~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~ad--lvvt~SGg-v~~EA~alG~Pvv~~~~ 309 (385)
T 4hwg_A 248 ---------------TKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAF--CILSDSGT-ITEEASILNLPALNIRE 309 (385)
T ss_dssp ---------------HHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCS--EEEECCTT-HHHHHHHTTCCEEECSS
T ss_pred ---------------HHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCc--EEEECCcc-HHHHHHHcCCCEEEcCC
Confidence 00111111 11 23566655554 456888877 89998876 46999999999999987
Q ss_pred ccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 385 YAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 385 ~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
..+.+. .+ +.|.++.+. .++++|.+++.+++.|+.
T Consensus 310 ~ter~e---~v--~~G~~~lv~-------~d~~~i~~ai~~ll~d~~ 344 (385)
T 4hwg_A 310 AHERPE---GM--DAGTLIMSG-------FKAERVLQAVKTITEEHD 344 (385)
T ss_dssp SCSCTH---HH--HHTCCEECC-------SSHHHHHHHHHHHHTTCB
T ss_pred Cccchh---hh--hcCceEEcC-------CCHHHHHHHHHHHHhChH
Confidence 543111 23 568776654 379999999999998865
No 38
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=98.81 E-value=2e-07 Score=89.80 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=80.1
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHH---hhhcCCCcccc
Q 011608 267 IYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFL---TRNAKMGLVVP 343 (481)
Q Consensus 267 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~---~~~~~~~~~v~ 343 (481)
+++..|+.. .......++++++..+.+++++ +.+ ...+.+. +..+ .++.+.
T Consensus 164 ~i~~vG~~~--~~Kg~~~li~a~~~~~~~l~i~-G~g----------------------~~~~~l~~~~~~~~-~~v~~~ 217 (342)
T 2iuy_A 164 FLLFMGRVS--PHKGALEAAAFAHACGRRLVLA-GPA----------------------WEPEYFDEITRRYG-STVEPI 217 (342)
T ss_dssp CEEEESCCC--GGGTHHHHHHHHHHHTCCEEEE-SCC----------------------CCHHHHHHHHHHHT-TTEEEC
T ss_pred EEEEEeccc--cccCHHHHHHHHHhcCcEEEEE-eCc----------------------ccHHHHHHHHHHhC-CCEEEe
Confidence 445567653 3444778888888877776554 221 1112222 2233 589889
Q ss_pred ccCchh---hhhccccCCcee--ee-----------cC-CchhHHHHHcCcceeecccccchhhhHHHHHHh--hceeEe
Q 011608 344 DWAPQV---EILGHASVGGFL--SH-----------CG-WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEE--LGVAVR 404 (481)
Q Consensus 344 ~~~pq~---~lL~~~~~~~~I--~H-----------gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~--~G~g~~ 404 (481)
+|+|+. +++..++ ++| +. -| -+++.||+++|+|+|+... ......+ ++ -+.|..
T Consensus 218 g~~~~~~l~~~~~~ad--v~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~----~~~~e~~-~~~~~~~g~~ 290 (342)
T 2iuy_A 218 GEVGGERRLDLLASAH--AVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGN----GCLAEIV-PSVGEVVGYG 290 (342)
T ss_dssp CCCCHHHHHHHHHHCS--EEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCT----TTHHHHG-GGGEEECCSS
T ss_pred ccCCHHHHHHHHHhCC--EEEECCcccccccccccccCccHHHHHHHhcCCCEEEcCC----CChHHHh-cccCCCceEE
Confidence 999875 6787877 455 22 33 3579999999999999875 3355554 45 456665
Q ss_pred ccccCCCCccCHHHHHHHHHHHhc
Q 011608 405 PNEMPTENLVKREEIEMMVRRILV 428 (481)
Q Consensus 405 ~~~~~~~~~~~~~~l~~al~~vl~ 428 (481)
+ .. +.+++.++|.+++.
T Consensus 291 ~------~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 291 T------DF-APDEARRTLAGLPA 307 (342)
T ss_dssp S------CC-CHHHHHHHHHTSCC
T ss_pred c------CC-CHHHHHHHHHHHHH
Confidence 5 33 89999999999886
No 39
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=98.61 E-value=1.5e-05 Score=78.82 Aligned_cols=79 Identities=13% Similarity=-0.024 Sum_probs=56.9
Q ss_pred CCccccccCc---h---hhhhccccCCceeeec----CCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccc
Q 011608 338 MGLVVPDWAP---Q---VEILGHASVGGFLSHC----GWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNE 407 (481)
Q Consensus 338 ~~~~v~~~~p---q---~~lL~~~~~~~~I~Hg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~ 407 (481)
.++.+.+|++ + .+++..++ ++|.-. .-+++.||+++|+|+|+.+. ..+...+ ++-+.|..+
T Consensus 293 ~~V~~~G~~~~~~~~~~~~~~~~ad--~~v~ps~~E~~~~~~lEAma~G~PvI~~~~----~g~~e~i-~~~~~g~l~-- 363 (416)
T 2x6q_A 293 YDVKVLTNLIGVHAREVNAFQRASD--VILQMSIREGFGLTVTEAMWKGKPVIGRAV----GGIKFQI-VDGETGFLV-- 363 (416)
T ss_dssp TTEEEEEGGGTCCHHHHHHHHHHCS--EEEECCSSCSSCHHHHHHHHTTCCEEEESC----HHHHHHC-CBTTTEEEE--
T ss_pred CcEEEecccCCCCHHHHHHHHHhCC--EEEECCCcCCCccHHHHHHHcCCCEEEccC----CCChhhe-ecCCCeEEE--
Confidence 4788878775 3 34677777 566543 45689999999999999764 3455554 455677664
Q ss_pred cCCCCccCHHHHHHHHHHHhcCCc
Q 011608 408 MPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 408 ~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
. +.+++.++|.+++.|+.
T Consensus 364 ----~--d~~~la~~i~~ll~~~~ 381 (416)
T 2x6q_A 364 ----R--DANEAVEVVLYLLKHPE 381 (416)
T ss_dssp ----S--SHHHHHHHHHHHHHCHH
T ss_pred ----C--CHHHHHHHHHHHHhCHH
Confidence 3 78999999999998755
No 40
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=98.33 E-value=0.00011 Score=78.27 Aligned_cols=92 Identities=8% Similarity=-0.001 Sum_probs=57.7
Q ss_pred CCccccc----cCchhhhhc----cccCCceeee----cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEec
Q 011608 338 MGLVVPD----WAPQVEILG----HASVGGFLSH----CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRP 405 (481)
Q Consensus 338 ~~~~v~~----~~pq~~lL~----~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~ 405 (481)
.++.+.+ ++|+.++.. .++ +||.= |--.++.||+++|+|+|+- |.......+ ++-+.|+.+
T Consensus 640 ~~V~flG~~~~~v~~~eL~~~~~~aaD--vfV~PS~~EgfglvllEAMA~G~PVIas----d~GG~~EiV-~dg~~Gllv 712 (816)
T 3s28_A 640 GQFRWISSQMDRVRNGELYRYICDTKG--AFVQPALYEAFGLTVVEAMTCGLPTFAT----CKGGPAEII-VHGKSGFHI 712 (816)
T ss_dssp BBEEEECCCCCHHHHHHHHHHHHHTTC--EEEECCSCBSSCHHHHHHHHTTCCEEEE----SSBTHHHHC-CBTTTBEEE
T ss_pred CcEEEccCccccCCHHHHHHHHHhcCe--EEEECCCccCccHHHHHHHHcCCCEEEe----CCCChHHHH-ccCCcEEEe
Confidence 3566666 444555544 234 56632 3345899999999999996 444455554 455677776
Q ss_pred cccCCCCccCHHHHHHHHHHHh----cCCc-hHHHHHHHHHH
Q 011608 406 NEMPTENLVKREEIEMMVRRIL----VDKE-GQALRSRVKEL 442 (481)
Q Consensus 406 ~~~~~~~~~~~~~l~~al~~vl----~~~~-~~~~r~~a~~l 442 (481)
+. -+.++++++|.+++ .|+. ...+.+++++.
T Consensus 713 ~p------~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~ 748 (816)
T 3s28_A 713 DP------YHGDQAADTLADFFTKCKEDPSHWDEISKGGLQR 748 (816)
T ss_dssp CT------TSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred CC------CCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 53 37899999997766 6654 33444444443
No 41
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=98.21 E-value=9e-05 Score=74.75 Aligned_cols=81 Identities=11% Similarity=0.032 Sum_probs=54.7
Q ss_pred CCcc-ccccCch--hhhhccccCCceee----ecCCchhHHHHHcCcceeecccccchhhhHHHHHHhh---------ce
Q 011608 338 MGLV-VPDWAPQ--VEILGHASVGGFLS----HCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEEL---------GV 401 (481)
Q Consensus 338 ~~~~-v~~~~pq--~~lL~~~~~~~~I~----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~---------G~ 401 (481)
.++. ..++... ..++..++ +||. -|--+++.||+++|+|+|+... ......+ ++- +.
T Consensus 346 ~~v~~~~g~~~~~~~~~~~~ad--v~v~pS~~E~~~~~~lEAma~G~PvI~s~~----gg~~e~v-~~~~~~~~~~~~~~ 418 (485)
T 1rzu_A 346 GRVGVAIGYNEPLSHLMQAGCD--AIIIPSRFEPCGLTQLYALRYGCIPVVART----GGLADTV-IDANHAALASKAAT 418 (485)
T ss_dssp TTEEEEESCCHHHHHHHHHHCS--EEEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHC-CBCCHHHHHTTCCC
T ss_pred CcEEEecCCCHHHHHHHHhcCC--EEEECcccCCCCHHHHHHHHCCCCEEEeCC----CChhhee-cccccccccccCCc
Confidence 4675 5677333 25677777 5663 2334689999999999999765 3344444 343 57
Q ss_pred eEeccccCCCCccCHHHHHHHHHHHh---cCCc
Q 011608 402 AVRPNEMPTENLVKREEIEMMVRRIL---VDKE 431 (481)
Q Consensus 402 g~~~~~~~~~~~~~~~~l~~al~~vl---~~~~ 431 (481)
|..++. -+.++++++|.+++ .|+.
T Consensus 419 G~l~~~------~d~~~la~~i~~ll~~~~~~~ 445 (485)
T 1rzu_A 419 GVQFSP------VTLDGLKQAIRRTVRYYHDPK 445 (485)
T ss_dssp BEEESS------CSHHHHHHHHHHHHHHHTCHH
T ss_pred ceEeCC------CCHHHHHHHHHHHHHHhCCHH
Confidence 777642 37899999999999 5654
No 42
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=98.17 E-value=1.7e-05 Score=68.45 Aligned_cols=139 Identities=9% Similarity=0.064 Sum_probs=87.0
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHh--hh-cCCCcc
Q 011608 266 VIYVSFGGGGTLSANQMIEVAWGLELS-QQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLT--RN-AKMGLV 341 (481)
Q Consensus 266 vv~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~~-~~~~~~ 341 (481)
.+++..|+.. .......++++++.. +.+++++ +.... ...+ ..+.+ .. -..++.
T Consensus 24 ~~i~~~G~~~--~~Kg~~~li~a~~~l~~~~l~i~-G~~~~------------------~~~l-~~~~~~~~~~l~~~v~ 81 (177)
T 2f9f_A 24 DFWLSVNRIY--PEKRIELQLEVFKKLQDEKLYIV-GWFSK------------------GDHA-ERYARKIMKIAPDNVK 81 (177)
T ss_dssp SCEEEECCSS--GGGTHHHHHHHHHHCTTSCEEEE-BCCCT------------------TSTH-HHHHHHHHHHSCTTEE
T ss_pred CEEEEEeccc--cccCHHHHHHHHHhCCCcEEEEE-ecCcc------------------HHHH-HHHHHhhhcccCCcEE
Confidence 3556677753 244577888888887 4555554 32211 0111 11111 11 124788
Q ss_pred ccccCch---hhhhccccCCceee---ecCCc-hhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCcc
Q 011608 342 VPDWAPQ---VEILGHASVGGFLS---HCGWN-STLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLV 414 (481)
Q Consensus 342 v~~~~pq---~~lL~~~~~~~~I~---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~ 414 (481)
+.+|+|+ ..++..++ ++|. +.|++ ++.||+++|+|+|+... ..+...+ ++.+.|..+ . -
T Consensus 82 ~~g~~~~~e~~~~~~~ad--i~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i-~~~~~g~~~-~------~ 147 (177)
T 2f9f_A 82 FLGSVSEEELIDLYSRCK--GLLCTAKDEDFGLTPIEAMASGKPVIAVNE----GGFKETV-INEKTGYLV-N------A 147 (177)
T ss_dssp EEESCCHHHHHHHHHHCS--EEEECCSSCCSCHHHHHHHHTTCCEEEESS----HHHHHHC-CBTTTEEEE-C------S
T ss_pred EeCCCCHHHHHHHHHhCC--EEEeCCCcCCCChHHHHHHHcCCcEEEeCC----CCHHHHh-cCCCccEEe-C------C
Confidence 8899997 56777877 5665 34444 99999999999999754 4455555 455567665 2 2
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 011608 415 KREEIEMMVRRILVDKEGQALRSRVKEL 442 (481)
Q Consensus 415 ~~~~l~~al~~vl~~~~~~~~r~~a~~l 442 (481)
+.+++.++|.+++.|+.. +++++++.
T Consensus 148 d~~~l~~~i~~l~~~~~~--~~~~~~~~ 173 (177)
T 2f9f_A 148 DVNEIIDAMKKVSKNPDK--FKKDCFRR 173 (177)
T ss_dssp CHHHHHHHHHHHHHCTTT--THHHHHHH
T ss_pred CHHHHHHHHHHHHhCHHH--HHHHHHHH
Confidence 789999999999988651 24444443
No 43
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=98.08 E-value=0.0014 Score=63.58 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=64.7
Q ss_pred ccccccCch-hhhhccccCCceee---e--cCCchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCCCc
Q 011608 340 LVVPDWAPQ-VEILGHASVGGFLS---H--CGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENL 413 (481)
Q Consensus 340 ~~v~~~~pq-~~lL~~~~~~~~I~---H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~ 413 (481)
+.+.++..+ ..++..++ +++. . +|..++.||+++|+|+|+-|..++.......+ .+.|.++.+.
T Consensus 262 v~~~~~~~dl~~~y~~aD--v~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~-~~~G~l~~~~------- 331 (374)
T 2xci_A 262 VILVDRFGILKELYPVGK--IAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFL-EKEGAGFEVK------- 331 (374)
T ss_dssp EEECCSSSCHHHHGGGEE--EEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHH-HHTTCEEECC-------
T ss_pred EEEECCHHHHHHHHHhCC--EEEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHH-HHCCCEEEeC-------
Confidence 444454433 55777777 5433 2 24478999999999999877777777766655 3568776643
Q ss_pred cCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Q 011608 414 VKREEIEMMVRRILVDKE-GQALRSRVKELKHS 445 (481)
Q Consensus 414 ~~~~~l~~al~~vl~~~~-~~~~r~~a~~l~~~ 445 (481)
+.++|.++|.+++.| + .+.|.+++++..+.
T Consensus 332 -d~~~La~ai~~ll~d-~~r~~mg~~ar~~~~~ 362 (374)
T 2xci_A 332 -NETELVTKLTELLSV-KKEIKVEEKSREIKGC 362 (374)
T ss_dssp -SHHHHHHHHHHHHHS-CCCCCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 689999999999987 4 33466666665544
No 44
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=97.88 E-value=0.0027 Score=63.79 Aligned_cols=81 Identities=12% Similarity=0.012 Sum_probs=54.3
Q ss_pred CCcc-ccccCch--hhhhccccCCceee----ecCCchhHHHHHcCcceeecccccchhhhHHHHHHhh---------ce
Q 011608 338 MGLV-VPDWAPQ--VEILGHASVGGFLS----HCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEEL---------GV 401 (481)
Q Consensus 338 ~~~~-v~~~~pq--~~lL~~~~~~~~I~----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~---------G~ 401 (481)
.++. +.++.+. ..++..++ +||. -|.-+++.||+++|+|+|+... ......+ ++- +.
T Consensus 347 ~~v~~~~g~~~~~~~~~~~~ad--v~v~pS~~E~~g~~~lEAma~G~PvI~s~~----gg~~e~v-~~~~~~~~~~~~~~ 419 (485)
T 2qzs_A 347 GQVGVQIGYHEAFSHRIMGGAD--VILVPSRFEPCGLTQLYGLKYGTLPLVRRT----GGLADTV-SDCSLENLADGVAS 419 (485)
T ss_dssp TTEEEEESCCHHHHHHHHHHCS--EEEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHC-CBCCHHHHHTTCCC
T ss_pred CcEEEeCCCCHHHHHHHHHhCC--EEEECCccCCCcHHHHHHHHCCCCEEECCC----CCcccee-ccCccccccccccc
Confidence 4664 6677333 25677777 5552 2334578899999999999754 3344444 333 57
Q ss_pred eEeccccCCCCccCHHHHHHHHHHHh---cCCc
Q 011608 402 AVRPNEMPTENLVKREEIEMMVRRIL---VDKE 431 (481)
Q Consensus 402 g~~~~~~~~~~~~~~~~l~~al~~vl---~~~~ 431 (481)
|..++. -+.++++++|.+++ .|++
T Consensus 420 G~l~~~------~d~~~la~~i~~ll~~~~~~~ 446 (485)
T 2qzs_A 420 GFVFED------SNAWSLLRAIRRAFVLWSRPS 446 (485)
T ss_dssp BEEECS------SSHHHHHHHHHHHHHHHTSHH
T ss_pred eEEECC------CCHHHHHHHHHHHHHHcCCHH
Confidence 777642 37899999999999 5654
No 45
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=97.82 E-value=0.0036 Score=61.40 Aligned_cols=74 Identities=9% Similarity=-0.048 Sum_probs=54.0
Q ss_pred CccccccCchh---hhhccccCCceee---ecCC-chhHHHH-------HcCcceeecccccchhhhHHHHHHhhceeEe
Q 011608 339 GLVVPDWAPQV---EILGHASVGGFLS---HCGW-NSTLESI-------VNGVPLIVWPLYAEQKMNATMLAEELGVAVR 404 (481)
Q Consensus 339 ~~~v~~~~pq~---~lL~~~~~~~~I~---HgG~-~s~~eal-------~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~ 404 (481)
++.+.+++|+. +++..++ ++|. +-|+ +++.||+ ++|+|+|+... + +.-..|..
T Consensus 266 ~V~f~G~~~~~~l~~~~~~ad--v~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~----------v-~~~~~G~l 332 (406)
T 2hy7_A 266 NVIVYGEMKHAQTIGYIKHAR--FGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA----------V-VGPYKSRF 332 (406)
T ss_dssp TEEEECCCCHHHHHHHHHTCS--EEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG----------G-TCSCSSEE
T ss_pred CEEEcCCCCHHHHHHHHHhcC--EEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh----------c-ccCcceEE
Confidence 78888999865 4577777 4553 3344 5688999 99999999765 4 34455665
Q ss_pred -ccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 405 -PNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 405 -~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
++. -+.++++++|.+++.|+.
T Consensus 333 ~v~~------~d~~~la~ai~~ll~~~~ 354 (406)
T 2hy7_A 333 GYTP------GNADSVIAAITQALEAPR 354 (406)
T ss_dssp EECT------TCHHHHHHHHHHHHHCCC
T ss_pred EeCC------CCHHHHHHHHHHHHhCcc
Confidence 542 378999999999998753
No 46
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=97.40 E-value=0.0024 Score=53.75 Aligned_cols=141 Identities=11% Similarity=0.076 Sum_probs=80.2
Q ss_pred cEEEEEeCCCCCCChHHHHHHHHHHHhCC--CcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhc--CCCc
Q 011608 265 SVIYVSFGGGGTLSANQMIEVAWGLELSQ--QRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNA--KMGL 340 (481)
Q Consensus 265 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~ 340 (481)
+++++..|+... ......++++++.+. .++-+.+-+. +...+.+.+... +.++
T Consensus 2 ~~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~~~l~i~G~---------------------g~~~~~~~~~~~~~~~~v 58 (166)
T 3qhp_A 2 PFKIAMVGRYSN--EKNQSVLIKAVALSKYKQDIVLLLKGK---------------------GPDEKKIKLLAQKLGVKA 58 (166)
T ss_dssp CEEEEEESCCST--TTTHHHHHHHHHTCTTGGGEEEEEECC---------------------STTHHHHHHHHHHHTCEE
T ss_pred ceEEEEEeccch--hcCHHHHHHHHHHhccCCCeEEEEEeC---------------------CccHHHHHHHHHHcCCeE
Confidence 367778887633 344677778887763 2333332211 111123333222 1267
Q ss_pred cccccCchh---hhhccccCCceee----ecCCchhHHHHHcCc-ceeecccccchhhhHHHHHHhhceeEeccccCCCC
Q 011608 341 VVPDWAPQV---EILGHASVGGFLS----HCGWNSTLESIVNGV-PLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTEN 412 (481)
Q Consensus 341 ~v~~~~pq~---~lL~~~~~~~~I~----HgG~~s~~eal~~Gv-P~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~ 412 (481)
.+ +|+|+. .++..++ ++|. -|.-.++.||+++|+ |+|+....+ .....+ ++.+. .+ .
T Consensus 59 ~~-g~~~~~~~~~~~~~ad--v~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~---~~~~~~-~~~~~--~~------~ 123 (166)
T 3qhp_A 59 EF-GFVNSNELLEILKTCT--LYVHAANVESEAIACLEAISVGIVPVIANSPLS---ATRQFA-LDERS--LF------E 123 (166)
T ss_dssp EC-CCCCHHHHHHHHTTCS--EEEECCCSCCCCHHHHHHHHTTCCEEEECCTTC---GGGGGC-SSGGG--EE------C
T ss_pred EE-eecCHHHHHHHHHhCC--EEEECCcccCccHHHHHHHhcCCCcEEeeCCCC---chhhhc-cCCce--EE------c
Confidence 77 999864 4676766 5664 234459999999996 999933222 122222 23233 22 2
Q ss_pred ccCHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Q 011608 413 LVKREEIEMMVRRILVDKE-GQALRSRVKELK 443 (481)
Q Consensus 413 ~~~~~~l~~al~~vl~~~~-~~~~r~~a~~l~ 443 (481)
.-+.+++.++|.+++.|+. ...+++++++..
T Consensus 124 ~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 155 (166)
T 3qhp_A 124 PNNAKDLSAKIDWWLENKLERERMQNEYAKSA 155 (166)
T ss_dssp TTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 2389999999999998754 334555555443
No 47
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.33 E-value=0.0019 Score=68.21 Aligned_cols=101 Identities=15% Similarity=0.232 Sum_probs=72.1
Q ss_pred CCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhh-----hcC
Q 011608 263 TESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTR-----NAK 337 (481)
Q Consensus 263 ~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-----~~~ 337 (481)
+..+||.||.+....+++.+..-++-|++.+.-++|.+..+.. .-..+... +..
T Consensus 521 ~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~---------------------~~~~l~~~~~~~gi~~ 579 (723)
T 4gyw_A 521 EDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV---------------------GEPNIQQYAQNMGLPQ 579 (723)
T ss_dssp TTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGG---------------------GHHHHHHHHHHTTCCG
T ss_pred CCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHH---------------------HHHHHHHHHHhcCCCc
Confidence 4459999999988899999999999999999889998865421 00112211 112
Q ss_pred CCccccccCchhhhhc-cccCCceee---ecCCchhHHHHHcCcceeeccc
Q 011608 338 MGLVVPDWAPQVEILG-HASVGGFLS---HCGWNSTLESIVNGVPLIVWPL 384 (481)
Q Consensus 338 ~~~~v~~~~pq~~lL~-~~~~~~~I~---HgG~~s~~eal~~GvP~v~~P~ 384 (481)
..+++.+..|..+-|. +..+++++. .+|.+|++|||+.|||+|.+|=
T Consensus 580 ~r~~f~~~~~~~~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g 630 (723)
T 4gyw_A 580 NRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPG 630 (723)
T ss_dssp GGEEEEECCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCC
T ss_pred CeEEECCCCCHHHHHHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEccC
Confidence 3566667777654332 233447765 8999999999999999999983
No 48
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.31 E-value=0.0051 Score=63.14 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=58.0
Q ss_pred CCccccccCchh---hhhccccCCcee---eecCCchhHHHHHcCcceeecccccchhhh-HHHHHHhhceeEeccccCC
Q 011608 338 MGLVVPDWAPQV---EILGHASVGGFL---SHCGWNSTLESIVNGVPLIVWPLYAEQKMN-ATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 338 ~~~~v~~~~pq~---~lL~~~~~~~~I---~HgG~~s~~eal~~GvP~v~~P~~~DQ~~n-a~~v~~~~G~g~~~~~~~~ 410 (481)
+++.+.+++|+. .++..++ +|| ..|+.+++.||+++|+|+|++|-..=.... +..+ ...|+.-.+.
T Consensus 434 ~~v~~~g~~~~~~~~~~~~~ad--v~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l-~~~g~~e~v~---- 506 (568)
T 2vsy_A 434 QRLVFMPKLPHPQYLARYRHAD--LFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLN-HHLGLDEMNV---- 506 (568)
T ss_dssp GGEEEECCCCHHHHHHHGGGCS--EEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHH-HHHTCGGGBC----
T ss_pred hHEEeeCCCCHHHHHHHHhcCC--EEeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHH-HHCCChhhhc----
Confidence 468888999854 4577777 565 126677899999999999997753211112 2333 4556654443
Q ss_pred CCccCHHHHHHHHHHHhcCCc
Q 011608 411 ENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~~ 431 (481)
. +.+++.+++.+++.|+.
T Consensus 507 -~--~~~~la~~i~~l~~~~~ 524 (568)
T 2vsy_A 507 -A--DDAAFVAKAVALASDPA 524 (568)
T ss_dssp -S--SHHHHHHHHHHHHHCHH
T ss_pred -C--CHHHHHHHHHHHhcCHH
Confidence 2 89999999999998865
No 49
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=97.09 E-value=0.0026 Score=64.72 Aligned_cols=139 Identities=8% Similarity=-0.007 Sum_probs=85.1
Q ss_pred cEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEE--cCCCCCCCCCcccccCCCCCCCCCCCCchhHHh-hhcCCCcc
Q 011608 265 SVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVV--RPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLT-RNAKMGLV 341 (481)
Q Consensus 265 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~~~~~~ 341 (481)
.++|.||+......++.++..++-+++.+..++|.. +... + ....+-..+.. .+. +.++
T Consensus 441 ~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~---------------g--~~~~~~~~~~~~GI~-~Rv~ 502 (631)
T 3q3e_A 441 VVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSN---------------G--ITHPYVERFIKSYLG-DSAT 502 (631)
T ss_dssp EEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCC---------------G--GGHHHHHHHHHHHHG-GGEE
T ss_pred eEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCCCc---------------h--hhHHHHHHHHHcCCC-ccEE
Confidence 589999999888889999999888888887777753 2110 0 00000011111 122 2566
Q ss_pred ccccCchhhhh---ccccCCcee---eecCCchhHHHHHcCcceeecccccchhhh-HHHHHHhhceeEe-ccccCCCCc
Q 011608 342 VPDWAPQVEIL---GHASVGGFL---SHCGWNSTLESIVNGVPLIVWPLYAEQKMN-ATMLAEELGVAVR-PNEMPTENL 413 (481)
Q Consensus 342 v~~~~pq~~lL---~~~~~~~~I---~HgG~~s~~eal~~GvP~v~~P~~~DQ~~n-a~~v~~~~G~g~~-~~~~~~~~~ 413 (481)
+.+.+|+.+.+ ..++ +|+ ..+|.+|++||+++|||+|+++-..=--.. +..+ ...|+.-. +.
T Consensus 503 F~g~~p~~e~la~y~~aD--IfLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL-~~~GLpE~LIA------- 572 (631)
T 3q3e_A 503 AHPHSPYHQYLRILHNCD--MMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLF-KRLGLPEWLIA------- 572 (631)
T ss_dssp EECCCCHHHHHHHHHTCS--EEECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHH-HHTTCCGGGEE-------
T ss_pred EcCCCCHHHHHHHHhcCc--EEEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHH-HhcCCCcceec-------
Confidence 77888876544 5555 454 237889999999999999998743211111 1222 34555432 22
Q ss_pred cCHHHHHHHHHHHhcCCc
Q 011608 414 VKREEIEMMVRRILVDKE 431 (481)
Q Consensus 414 ~~~~~l~~al~~vl~~~~ 431 (481)
-+.++..+...++..|..
T Consensus 573 ~d~eeYv~~Av~La~D~~ 590 (631)
T 3q3e_A 573 NTVDEYVERAVRLAENHQ 590 (631)
T ss_dssp SSHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHhCCHH
Confidence 267777777778888865
No 50
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=97.00 E-value=0.009 Score=51.83 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=59.2
Q ss_pred Cccc-cccCchh---hhhccccCCceeeec---C-CchhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCC
Q 011608 339 GLVV-PDWAPQV---EILGHASVGGFLSHC---G-WNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPT 410 (481)
Q Consensus 339 ~~~v-~~~~pq~---~lL~~~~~~~~I~Hg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~ 410 (481)
++.+ .+++++. .++..++ ++|.-. | -.++.||+++|+|+|+.... .....+ ..+.|..++.
T Consensus 96 ~v~~~~g~~~~~~~~~~~~~ad--~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~e~~--~~~~g~~~~~--- 164 (200)
T 2bfw_A 96 NVKVITEMLSREFVRELYGSVD--FVIIPSYFEPFGLVALEAMCLGAIPIASAVG----GLRDII--TNETGILVKA--- 164 (200)
T ss_dssp TEEEECSCCCHHHHHHHHTTCS--EEEECCSCCSSCHHHHHHHHTTCEEEEESCH----HHHHHC--CTTTCEEECT---
T ss_pred CEEEEeccCCHHHHHHHHHHCC--EEEECCCCCCccHHHHHHHHCCCCEEEeCCC----ChHHHc--CCCceEEecC---
Confidence 6877 8999854 5677777 565422 3 45889999999999987543 333332 3355666542
Q ss_pred CCccCHHHHHHHHHHHhc-CCc-hHHHHHHHHH
Q 011608 411 ENLVKREEIEMMVRRILV-DKE-GQALRSRVKE 441 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~-~~~-~~~~r~~a~~ 441 (481)
-+.+++.++|.+++. |+. ...+++++++
T Consensus 165 ---~~~~~l~~~i~~l~~~~~~~~~~~~~~a~~ 194 (200)
T 2bfw_A 165 ---GDPGELANAILKALELSRSDLSKFRENCKK 194 (200)
T ss_dssp ---TCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 378999999999998 754 2334444443
No 51
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=96.94 E-value=0.037 Score=52.93 Aligned_cols=107 Identities=8% Similarity=-0.021 Sum_probs=70.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCceE-EEecCCCCCCCCCCCCc
Q 011608 3 TTKTHIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLFN-IVSLPPVDISALLDADA 80 (481)
Q Consensus 3 ~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~ 80 (481)
-+.++|+++-..+.|++.-+.++.++|+++. +.+|++++.+.+.+. ++..+ .++ ++.++...
T Consensus 6 l~~~~iLvi~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l----~~~~p---~vd~vi~~~~~~--------- 69 (349)
T 3tov_A 6 LDYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQV----MEYNP---NIDELIVVDKKG--------- 69 (349)
T ss_dssp CTTCEEEEECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGG----TSSCT---TCSEEEEECCSS---------
T ss_pred CCCCEEEEEecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHH----HhcCC---CccEEEEeCccc---------
Confidence 3457999999999999999999999999875 799999999966554 33333 443 45554211
Q ss_pred cHHHHHHHHHHHhhHHHHHHHhhcCCCC-cEEEEcCCCchHHHHHHHhCCceEE
Q 011608 81 SIVIKIIFMMRESLPALRSSISTLKPRP-TALFADLFGTEAFQIADEFEMLKYV 133 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-D~VI~D~~~~~~~~~A~~~giP~v~ 133 (481)
....+.. ...+...|++. ++ |++|.=....-...++...|+|..+
T Consensus 70 -~~~~~~~-----~~~l~~~Lr~~--~y~D~vidl~~~~rs~~l~~~~~a~~ri 115 (349)
T 3tov_A 70 -RHNSISG-----LNEVAREINAK--GKTDIVINLHPNERTSYLAWKIHAPITT 115 (349)
T ss_dssp -HHHHHHH-----HHHHHHHHHHH--CCCCEEEECCCSHHHHHHHHHHCCSEEE
T ss_pred -ccccHHH-----HHHHHHHHhhC--CCCeEEEECCCChHHHHHHHHhCCCeEE
Confidence 0111111 11233345555 89 9998543344455678888998755
No 52
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=96.92 E-value=0.2 Score=47.45 Aligned_cols=103 Identities=12% Similarity=0.084 Sum_probs=63.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCce-EEEecCCCCCCCCCCCCccHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLF-NIVSLPPVDISALLDADASIV 83 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~ 83 (481)
|+|+++.....|++.-..++.++|+++. +.+|++++.+.+.+. +...+ .+ .++.++.. .. . .
T Consensus 1 mkILii~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~~~~l----~~~~p---~i~~v~~~~~~---~~-~--~--- 64 (348)
T 1psw_A 1 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPL----LSRMP---EVNEAIPMPLG---HG-A--L--- 64 (348)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHH----HTTCT---TEEEEEEC----------------
T ss_pred CeEEEEeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcchhHH----HhcCC---ccCEEEEecCC---cc-c--c---
Confidence 6899999888899999999999999865 899999999854443 33333 44 34444321 00 0 0
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCC-chHHHHHHHhCCceEE
Q 011608 84 IKIIFMMRESLPALRSSISTLKPRPTALFADLFG-TEAFQIADEFEMLKYV 133 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~-~~~~~~A~~~giP~v~ 133 (481)
.+ .....+...+++. ++|++| |... .-...++...|+|..+
T Consensus 65 -~~-----~~~~~l~~~l~~~--~~D~vi-d~~~~~~sa~~~~~~~~~~~i 106 (348)
T 1psw_A 65 -EI-----GERRKLGHSLREK--RYDRAY-VLPNSFKSALVPLFAGIPHRT 106 (348)
T ss_dssp -CH-----HHHHHHHHHTTTT--TCSEEE-ECSCCSGGGHHHHHTTCSEEE
T ss_pred -ch-----HHHHHHHHHHHhc--CCCEEE-ECCCChHHHHHHHHhCCCEEe
Confidence 00 0111233334444 899998 4433 3345678888999744
No 53
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=96.92 E-value=0.0016 Score=62.14 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=68.8
Q ss_pred CccccccCchhhhh---ccccCCceeeecCC---------chhHHHHHcCcceeecccccchhhhHHHHHHhhceeEecc
Q 011608 339 GLVVPDWAPQVEIL---GHASVGGFLSHCGW---------NSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPN 406 (481)
Q Consensus 339 ~~~v~~~~pq~~lL---~~~~~~~~I~HgG~---------~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~ 406 (481)
|+...+|+|+.++. ..++.+++.+-+.+ +-+.|++++|+|+|+.+ ...++..+ ++.|+|..++
T Consensus 215 nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~----~~~~~~~v-~~~~~G~~~~ 289 (339)
T 3rhz_A 215 NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQE----GIANQELI-ENNGLGWIVK 289 (339)
T ss_dssp TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEET----TCTTTHHH-HHHTCEEEES
T ss_pred CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEcc----ChhHHHHH-HhCCeEEEeC
Confidence 78888999997754 34455444423322 34789999999999855 45677777 7899999874
Q ss_pred ccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 011608 407 EMPTENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSA 446 (481)
Q Consensus 407 ~~~~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~ 446 (481)
+.+++.+++..+. ++..+.|++|+++.++++
T Consensus 290 --------~~~e~~~~i~~l~-~~~~~~m~~na~~~a~~~ 320 (339)
T 3rhz_A 290 --------DVEEAIMKVKNVN-EDEYIELVKNVRSFNPIL 320 (339)
T ss_dssp --------SHHHHHHHHHHCC-HHHHHHHHHHHHHHTHHH
T ss_pred --------CHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHh
Confidence 4688889998754 444667899999988873
No 54
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=96.81 E-value=0.014 Score=56.97 Aligned_cols=77 Identities=9% Similarity=0.101 Sum_probs=50.6
Q ss_pred ccccccCchh---hhhccccCCceee----ecCCchhHHHHHcCcceeecccccchhhhHHHHHHhhce-----------
Q 011608 340 LVVPDWAPQV---EILGHASVGGFLS----HCGWNSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGV----------- 401 (481)
Q Consensus 340 ~~v~~~~pq~---~lL~~~~~~~~I~----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~----------- 401 (481)
+.+.+|+|+. +++..++ ++|. -|.-+++.||+++|+|+|+.... .....+ ++ |.
T Consensus 256 v~~~g~~~~~~~~~~~~~ad--v~v~pS~~E~~~~~~lEAma~G~PvI~s~~~----g~~e~v-~~-~~~~~i~~~~~~~ 327 (413)
T 3oy2_A 256 MINRTVLTDERVDMMYNACD--VIVNCSSGEGFGLCSAEGAVLGKPLIISAVG----GADDYF-SG-DCVYKIKPSAWIS 327 (413)
T ss_dssp EEECSCCCHHHHHHHHHHCS--EEEECCSCCSSCHHHHHHHTTTCCEEEECCH----HHHHHS-CT-TTSEEECCCEEEE
T ss_pred eeccCcCCHHHHHHHHHhCC--EEEeCCCcCCCCcHHHHHHHcCCCEEEcCCC----ChHHHH-cc-Ccccccccccccc
Confidence 5556999854 4666777 5553 23345899999999999996543 333333 12 22
Q ss_pred -----eE--eccccCCCCccCHHHHHHHHHHHhcCCc
Q 011608 402 -----AV--RPNEMPTENLVKREEIEMMVRRILVDKE 431 (481)
Q Consensus 402 -----g~--~~~~~~~~~~~~~~~l~~al~~vl~~~~ 431 (481)
|. .+. .-+.+++.++| +++.|++
T Consensus 328 ~~~~~G~~gl~~------~~d~~~la~~i-~l~~~~~ 357 (413)
T 3oy2_A 328 VDDRDGIGGIEG------IIDVDDLVEAF-TFFKDEK 357 (413)
T ss_dssp CTTTCSSCCEEE------ECCHHHHHHHH-HHTTSHH
T ss_pred cccccCcceeeC------CCCHHHHHHHH-HHhcCHH
Confidence 33 333 13899999999 9998765
No 55
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=93.79 E-value=0.11 Score=50.93 Aligned_cols=83 Identities=17% Similarity=0.047 Sum_probs=54.6
Q ss_pred CccccccCchhh---hhccccCCceee--e-cCC-chhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCC
Q 011608 339 GLVVPDWAPQVE---ILGHASVGGFLS--H-CGW-NSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTE 411 (481)
Q Consensus 339 ~~~v~~~~pq~~---lL~~~~~~~~I~--H-gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 411 (481)
++...+++|+.+ ++..++ +||. . =|. +++.||+++|+|+|+ -..+ ....+ ++-..|+.++.
T Consensus 296 ~v~f~G~~~~~~l~~~~~~ad--v~v~pS~~E~~g~~~lEAmA~G~PVV~-~~~g----~~e~v-~~~~~G~lv~~---- 363 (413)
T 2x0d_A 296 HLNSLGKLTLEDYADLLKRSS--IGISLMISPHPSYPPLEMAHFGLRVIT-NKYE----NKDLS-NWHSNIVSLEQ---- 363 (413)
T ss_dssp EEEEEESCCHHHHHHHHHHCC--EEECCCSSSSCCSHHHHHHHTTCEEEE-ECBT----TBCGG-GTBTTEEEESS----
T ss_pred cEEEcCCCCHHHHHHHHHhCC--EEEEecCCCCCCcHHHHHHhCCCcEEE-eCCC----cchhh-hcCCCEEEeCC----
Confidence 677789998754 566667 5653 2 133 467999999999998 3222 12333 44446776643
Q ss_pred CccCHHHHHHHHHHHhcCCchHHHHHH
Q 011608 412 NLVKREEIEMMVRRILVDKEGQALRSR 438 (481)
Q Consensus 412 ~~~~~~~l~~al~~vl~~~~~~~~r~~ 438 (481)
-+.++++++|.++++|+. .+++
T Consensus 364 --~d~~~la~ai~~ll~~~~---~~~~ 385 (413)
T 2x0d_A 364 --LNPENIAETLVELCMSFN---NRDV 385 (413)
T ss_dssp --CSHHHHHHHHHHHHHHTC-------
T ss_pred --CCHHHHHHHHHHHHcCHH---HHHH
Confidence 488999999999998876 5544
No 56
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=81.59 E-value=7 Score=34.88 Aligned_cols=112 Identities=10% Similarity=0.088 Sum_probs=57.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHHHH
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVIKI 86 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (481)
||++.-=-+. |---+..|+++|.+. | +|+++.|...++.....+.-. .-+++..+........ .+ ..
T Consensus 3 ~ILlTNDDGi-~apGi~~L~~~l~~~-g-~V~VvAP~~~~Sg~g~siT~~---~pl~~~~~~~~~~~~v--~G-TP---- 69 (251)
T 2wqk_A 3 TFLLVNDDGY-FSPGINALREALKSL-G-RVVVVAPDRNLSGVGHSLTFT---EPLKMRKIDTDFYTVI--DG-TP---- 69 (251)
T ss_dssp EEEEECSSCT-TCHHHHHHHHHHTTT-S-EEEEEEESSCCTTSCCSCCCS---SCEEEEEEETTEEEET--TC-CH----
T ss_pred EEEEEcCCCC-CcHHHHHHHHHHHhC-C-CEEEEeeCCCCcccccCcCCC---CCceeEEeeccceeec--CC-Ch----
Confidence 4554443322 334567899999988 7 599998886665432222211 1233433322110000 00 11
Q ss_pred HHHHHHhhHHHHHHHhhcCCCCcEEEE----------cCCCchHHHH---HHHhCCceEEEec
Q 011608 87 IFMMRESLPALRSSISTLKPRPTALFA----------DLFGTEAFQI---ADEFEMLKYVYIA 136 (481)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~D~VI~----------D~~~~~~~~~---A~~~giP~v~~~~ 136 (481)
.... .-.+..++.+. +||+||+ |.+.++.+.+ |..+|||.|.++.
T Consensus 70 aDCV---~lal~~~l~~~--~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~ 127 (251)
T 2wqk_A 70 ADCV---HLGYRVILEEK--KPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSA 127 (251)
T ss_dssp HHHH---HHHHHTTTTTC--CCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHH---hhhhhhhcCCC--CCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEc
Confidence 0000 01222334444 8999997 4555554443 5558999999875
No 57
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=81.32 E-value=10 Score=33.81 Aligned_cols=125 Identities=12% Similarity=0.135 Sum_probs=68.5
Q ss_pred CCCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEec------CCCchh-hhhhccCCCCCCceEEEecCCCCCC
Q 011608 3 TTKTHIALLAS--PGMGHFIPVLELGKRFATQNDFQVTIFVV------ATDTST-VQSQLRNLPNPHLFNIVSLPPVDIS 73 (481)
Q Consensus 3 ~~~~~vvl~~~--p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~ 73 (481)
.++|+.++++- ...|-..-.+.|++.|+++ |++|.++=+ +...+. ..+.....+ ...+.+.+..+
T Consensus 23 ~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~-G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~--~~~~~~~~~~p--- 96 (251)
T 3fgn_A 23 QSHMTILVVTGTGTGVGKTVVCAALASAARQA-GIDVAVCKPVQTGTARGDDDLAEVGRLAGVT--QLAGLARYPQP--- 96 (251)
T ss_dssp CSSCEEEEEEESSTTSCHHHHHHHHHHHHHHT-TCCEEEEEEEECCGGGTCCHHHHHHHHHCCC--EEEEEEECSSS---
T ss_pred ccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEEEEeeeecCCCCCCHHHHHHHHHcCCC--CCCCCeeECCC---
Confidence 34566555543 3558999999999999999 999999853 111111 111111111 11222222111
Q ss_pred CCCCCCccHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCC----------chHHHHHHHhCCceEEEech
Q 011608 74 ALLDADASIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFG----------TEAFQIADEFEMLKYVYIAS 137 (481)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~----------~~~~~~A~~~giP~v~~~~~ 137 (481)
........+........+.+.+.++++..+.|+||+|-.. .....+|+.++.|++.+...
T Consensus 97 ----~sP~~aa~~~~~~~~~~~~i~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~ 166 (251)
T 3fgn_A 97 ----MAPAAAAEHAGMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTA 166 (251)
T ss_dssp ----SCHHHHHHHTTCCCCCHHHHHHHHHTTCCTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECS
T ss_pred ----CChHHHHHHcCCCCCCHHHHHHHHHHHHhcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcC
Confidence 1111111100000012356677777777789999988421 23567999999999987654
No 58
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=80.76 E-value=13 Score=32.85 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=28.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTV 49 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~ 49 (481)
|||++.-=-+. |---+..|+++|++. | +|+++.|...++..
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~~l~~~-g-~V~VVAP~~~~Sg~ 41 (244)
T 2e6c_A 1 MRILVTNDDGI-YSPGLWALAEAASQF-G-EVFVAAPDTEQSAA 41 (244)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTT-S-EEEEEEECSSCCCC
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhC-C-CEEEEecCCCCcCC
Confidence 46655543332 344578899999988 7 89999999766543
No 59
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=78.91 E-value=16 Score=32.49 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=29.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQ 50 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~ 50 (481)
|||++.-=-+. |---+..|+++|++. | +|+++.|...++...
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~~l~~~-g-~V~VVAP~~~~Sg~g 42 (247)
T 1j9j_A 1 MRILVTNDDGI-QSKGIIVLAELLSEE-H-EVFVVAPDKERSATG 42 (247)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTT-S-EEEEEEESSCCTTCT
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhC-C-CEEEEecCCCCcCCc
Confidence 46555543332 344578899999988 7 899999997666533
No 60
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=78.33 E-value=30 Score=30.70 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=30.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
|||++.-=-+. |---+..|+++|++. | +|+++.|...++.
T Consensus 2 M~ILlTNDDGi-~apGi~aL~~~l~~~-g-~V~VVAP~~~~Sg 41 (251)
T 2phj_A 2 PTFLLVNDDGY-FSPGINALREALKSL-G-RVVVVAPDRNLSG 41 (251)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTT-S-EEEEEEESSCCTT
T ss_pred CEEEEECCCCC-CCHHHHHHHHHHHhc-C-CEEEEecCCCccC
Confidence 77777664433 455678899999998 7 9999999976655
No 61
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=77.12 E-value=21 Score=35.84 Aligned_cols=83 Identities=8% Similarity=-0.035 Sum_probs=48.3
Q ss_pred CccccccCchh---hhhccccCCceeee---cCC-chhHHHHHcCcceeecccccchhhhHHHHHHhhceeEeccccCCC
Q 011608 339 GLVVPDWAPQV---EILGHASVGGFLSH---CGW-NSTLESIVNGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTE 411 (481)
Q Consensus 339 ~~~v~~~~pq~---~lL~~~~~~~~I~H---gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~ 411 (481)
++.+..+.++. .++..++ +||.= =|+ .+++||+++|+|.|+-... .....| ++-.-|........+
T Consensus 383 ~v~~~~~~~~~~~~~~~~~aD--~~v~PS~~E~fgl~~lEAma~G~PvI~s~~g----G~~e~V-~dg~~G~~~~~~~~~ 455 (536)
T 3vue_A 383 KVRAVVKFNAPLAHLIMAGAD--VLAVPSRFEPCGLIQLQGMRYGTPCACASTG----GLVDTV-IEGKTGFHMGRLSVD 455 (536)
T ss_dssp TEEEECSCCHHHHHHHHHHCS--EEEECCSCCSSCSHHHHHHHTTCCEEECSCT----HHHHHC-CBTTTEEECCCCCSC
T ss_pred ceEEEEeccHHHHHHHHHhhh--eeecccccCCCCHHHHHHHHcCCCEEEcCCC----Cchhee-eCCCCccccccCCCc
Confidence 56665666553 3566666 56542 233 3899999999999986543 333343 333334322210000
Q ss_pred ----CccCHHHHHHHHHHHhc
Q 011608 412 ----NLVKREEIEMMVRRILV 428 (481)
Q Consensus 412 ----~~~~~~~l~~al~~vl~ 428 (481)
...+.+.|.++|++++.
T Consensus 456 g~l~~~~d~~~la~ai~ral~ 476 (536)
T 3vue_A 456 CKVVEPSDVKKVAATLKRAIK 476 (536)
T ss_dssp TTCCCHHHHHHHHHHHHHHHH
T ss_pred eeEECCCCHHHHHHHHHHHHH
Confidence 12357889999988875
No 62
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=76.57 E-value=6.1 Score=35.87 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=29.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQ 50 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~ 50 (481)
|||++.-=-+. +---+..|+++|++. | +|+++.|...++...
T Consensus 1 M~ILlTNDDGi-~ApGi~aL~~aL~~~-g-~V~VVAP~~~qSg~g 42 (280)
T 1l5x_A 1 MKILVTNDDGV-HSPGLRLLYQFALSL-G-DVDVVAPESPKSATG 42 (280)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHGGG-S-EEEEEEESSCTTTSC
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhC-C-CEEEEecCCCCcCCc
Confidence 46655543332 344578899999998 7 999999997665533
No 63
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=75.36 E-value=17 Score=30.72 Aligned_cols=83 Identities=10% Similarity=0.109 Sum_probs=52.7
Q ss_pred cEEEEEc--CCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHH
Q 011608 6 THIALLA--SPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIV 83 (481)
Q Consensus 6 ~~vvl~~--~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (481)
|+++.+. -++.|=..-...||..|+++ |++|.++-..+.... ...+.... .++.+.+.+.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~-g~~vlliD~D~~~~~-~~~~~~~~--~~~~~~~~~~-------------- 62 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRS-GYNIAVVDTDPQMSL-TNWSKAGK--AAFDVFTAAS-------------- 62 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCTTCHH-HHHHTTSC--CSSEEEECCS--------------
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEEECCCCCCH-HHHHhcCC--CCCcEEecCc--------------
Confidence 3455444 37789999999999999999 999999987754432 11122222 2344433321
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCC
Q 011608 84 IKIIFMMRESLPALRSSISTLKPRPTALFADLFG 117 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~ 117 (481)
..+.+.++++..++|+||.|.-.
T Consensus 63 -----------~~l~~~l~~l~~~yD~viiD~~~ 85 (206)
T 4dzz_A 63 -----------EKDVYGIRKDLADYDFAIVDGAG 85 (206)
T ss_dssp -----------HHHHHTHHHHTTTSSEEEEECCS
T ss_pred -----------HHHHHHHHHhcCCCCEEEEECCC
Confidence 33445555555589999999643
No 64
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=75.04 E-value=1.7 Score=43.84 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=28.6
Q ss_pred CCcEEEEEcC---CC---ccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 4 TKTHIALLAS---PG---MGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 4 ~~~~vvl~~~---p~---~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
+.|||++++. |. .|=-...-.|+++|+++ ||+|++++|.
T Consensus 8 ~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~-G~~V~Vi~P~ 52 (536)
T 3vue_A 8 HHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAAN-GHRVMVISPR 52 (536)
T ss_dssp CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTT-TCEEEEEEEC
T ss_pred CCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHc-CCeEEEEecC
Confidence 4599999963 21 22123356789999999 9999999975
No 65
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=74.32 E-value=15 Score=31.85 Aligned_cols=111 Identities=9% Similarity=0.082 Sum_probs=59.8
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEecCCC-chhhhhhccCCCCCCceEEEecCCCCCCCCCCC
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFAT-QNDFQVTIFVVATD-TSTVQSQLRNLPNPHLFNIVSLPPVDISALLDA 78 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~-r~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 78 (481)
|...++||+++-.+..+.+.. |.++..+ . +++|..+.+... ....+.+ .. .++.+..++......
T Consensus 1 ~~~~~~riavl~SG~Gsnl~a---ll~~~~~~~-~~eI~~Vis~~~~a~~~~~A-~~----~gIp~~~~~~~~~~~---- 67 (215)
T 3tqr_A 1 MNREPLPIVVLISGNGTNLQA---IIGAIQKGL-AIEIRAVISNRADAYGLKRA-QQ----ADIPTHIIPHEEFPS---- 67 (215)
T ss_dssp ---CCEEEEEEESSCCHHHHH---HHHHHHTTC-SEEEEEEEESCTTCHHHHHH-HH----TTCCEEECCGGGSSS----
T ss_pred CCCCCcEEEEEEeCCcHHHHH---HHHHHHcCC-CCEEEEEEeCCcchHHHHHH-HH----cCCCEEEeCccccCc----
Confidence 788899999887666554444 4444433 4 588888777532 2211111 11 245555554211110
Q ss_pred CccHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCC-chHHHHHHHhCCceEEEech
Q 011608 79 DASIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFG-TEAFQIADEFEMLKYVYIAS 137 (481)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~-~~~~~~A~~~giP~v~~~~~ 137 (481)
. ....+.+.+.|++. ++|+||.=.+. .-...+-+.+...++-++++
T Consensus 68 ------r-----~~~d~~~~~~l~~~--~~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 114 (215)
T 3tqr_A 68 ------R-----TDFESTLQKTIDHY--DPKLIVLAGFMRKLGKAFVSHYSGRMINIHPS 114 (215)
T ss_dssp ------H-----HHHHHHHHHHHHTT--CCSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred ------h-----hHhHHHHHHHHHhc--CCCEEEEccchhhCCHHHHhhccCCeEEeCcc
Confidence 0 11134567788888 99999865433 33445566676677777764
No 66
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=74.17 E-value=15 Score=32.74 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
.+|||++.-=-+. |---+..|+++|++ +|+|+++.|...++.
T Consensus 10 ~~m~ILlTNDDGi-~apGi~aL~~~l~~--~~~V~VVAP~~~~Sg 51 (261)
T 3ty2_A 10 PKLRLLLSNDDGV-YAKGLAILAKTLAD--LGEVDVVAPDRNRSG 51 (261)
T ss_dssp -CCEEEEECSSCT-TCHHHHHHHHHHTT--TSEEEEEEESSCCTT
T ss_pred CCCeEEEEcCCCC-CCHHHHHHHHHHHh--cCCEEEEecCCCCcC
Confidence 3489887765443 45557778888875 689999999976665
No 67
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=73.58 E-value=13 Score=36.07 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=56.3
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCc
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADA 80 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (481)
|++.+.+|+++.-. +.+ | .+.++.++. |++|+++.+.+.... .... ..-.++.++.. .+.
T Consensus 1 M~~~~k~l~Il~~~-~~~--~--~i~~aa~~l-G~~vv~v~~~~~~~~-----~~~~--~~d~~~~~~~~-------~d~ 60 (425)
T 3vot_A 1 MTKRNKNLAIICQN-KHL--P--FIFEEAERL-GLKVTFFYNSAEDFP-----GNLP--AVERCVPLPLF-------EDE 60 (425)
T ss_dssp -CCCCCEEEEECCC-TTC--C--HHHHHHHHT-TCEEEEEEETTSCCC-----CSCT--TEEEEEEECTT-------TCH
T ss_pred CCCCCcEEEEECCC-hhH--H--HHHHHHHHC-CCEEEEEECCCcccc-----cCHh--hccEEEecCCC-------CCH
Confidence 88888999999744 322 2 356788888 999999987643221 0000 01123444311 010
Q ss_pred cHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEE--cCCCchHHHHHHHhCCce
Q 011608 81 SIVIKIIFMMRESLPALRSSISTLKPRPTALFA--DLFGTEAFQIADEFEMLK 131 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~--D~~~~~~~~~A~~~giP~ 131 (481)
+ ...+.+.++.++. ++|.|+. |.....+..+++++|+|.
T Consensus 61 ~----------~~~~~~~~~~~~~--~id~V~~~~e~~~~~~a~l~e~lglpg 101 (425)
T 3vot_A 61 E----------AAMDVVRQTFVEF--PFDGVMTLFEPALPFTAKAAEALNLPG 101 (425)
T ss_dssp H----------HHHHHHHHHHHHS--CCSEEECCCGGGHHHHHHHHHHTTCSS
T ss_pred H----------HHHHHHHHhhhhc--CCCEEEECCchhHHHHHHHHHHcCCCC
Confidence 1 1123344555566 8999883 444444567889999994
No 68
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=73.09 E-value=2 Score=41.78 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCCc-----cCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 3 TTKTHIALLASPGM-----GHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 3 ~~~~~vvl~~~p~~-----GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
..+|||++++.... |=......++++|+++ ||+|++++...
T Consensus 44 ~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~-GheV~Vvt~~~ 89 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNK-KFKKRIILTDA 89 (413)
T ss_dssp CCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTT-TCEEEEEESSC
T ss_pred CCCceEEEEeCCCCccccccHHHHHHHHHHHHHHc-CCceEEEEecC
Confidence 45699998885321 3335688999999999 99999999864
No 69
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=71.19 E-value=32 Score=30.57 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=30.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQ 50 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~ 50 (481)
|||++.-=-+. |---+..|+++|++. | +|+++.|...++...
T Consensus 2 M~ILlTNDDGi-~apGi~aL~~~L~~~-g-~V~VVAP~~~~Sg~g 43 (254)
T 2v4n_A 2 MRILLSNDDGV-HAPGIQTLAKALREF-A-DVQVVAPDRNRSGAS 43 (254)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTT-S-EEEEEEESSCCTTCT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhC-C-cEEEEeeCCCCcCcc
Confidence 67766654433 445578899999887 6 999999997666533
No 70
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=70.87 E-value=2.5 Score=39.34 Aligned_cols=43 Identities=9% Similarity=0.086 Sum_probs=38.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTST 48 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~ 48 (481)
|+|+++-..+.|++.-..++.++|+++. +.+|++++.+.+.+.
T Consensus 1 ~~ILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l 44 (326)
T 2gt1_A 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQI 44 (326)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTHH
T ss_pred CeEEEEeccccchHHhHHHHHHHHHHhCCCCEEEEEEehhhhHH
Confidence 6899999999999999999999999876 799999999966554
No 71
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=69.67 E-value=23 Score=36.52 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=30.8
Q ss_pred ccccccCch---------hhhhccccCCceeee---cCC-chhHHHHHcCcceeeccccc
Q 011608 340 LVVPDWAPQ---------VEILGHASVGGFLSH---CGW-NSTLESIVNGVPLIVWPLYA 386 (481)
Q Consensus 340 ~~v~~~~pq---------~~lL~~~~~~~~I~H---gG~-~s~~eal~~GvP~v~~P~~~ 386 (481)
+.+..|++. .+++..++ +||.= =|+ .+.+||+++|+|+|+--..+
T Consensus 495 If~P~~L~~~d~lf~~d~~~~~~~ad--vfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG 552 (725)
T 3nb0_A 495 IFHPEFLNANNPILGLDYDEFVRGCH--LGVFPSYYEPWGYTPAECTVMGVPSITTNVSG 552 (725)
T ss_dssp EECCSCCCTTCSSSCCCHHHHHHHCS--EEECCCSSBSSCHHHHHHHHTTCCEEEETTBH
T ss_pred EEeccccCCCCccchhHHHHHHhhce--EEEeccccCCCCHHHHHHHHcCCCEEEeCCCC
Confidence 344577765 35777777 55532 344 48999999999999966543
No 72
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=68.69 E-value=50 Score=28.03 Aligned_cols=101 Identities=9% Similarity=0.002 Sum_probs=59.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc-hhhhhh-ccCCCCCCceEEEecCCCCCCCCCCCCccHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDT-STVQSQ-LRNLPNPHLFNIVSLPPVDISALLDADASIV 83 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (481)
-.|++++-.+.|-..-.+.+|.+...+ |++|.|+..-... ..-+.. +..+ ++.+...... ..+...+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~-G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~g----f~~~~~~~~ 99 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH-GKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATG----FTWETQNRE 99 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT-TCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTT----CCCCGGGHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccc----cccCCCCcH
Confidence 468888888899999999999999999 9999999766431 100111 2222 2667777642 112221111
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCc
Q 011608 84 IKIIFMMRESLPALRSSISTLKPRPTALFADLFGT 118 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~ 118 (481)
.-............+.+.+ .++|+||.|-+..
T Consensus 100 -~~~~~a~~~l~~a~~~l~~--~~yDlvILDEi~~ 131 (196)
T 1g5t_A 100 -ADTAACMAVWQHGKRMLAD--PLLDMVVLDELTY 131 (196)
T ss_dssp -HHHHHHHHHHHHHHHHTTC--TTCSEEEEETHHH
T ss_pred -HHHHHHHHHHHHHHHHHhc--CCCCEEEEeCCCc
Confidence 1112222223333334433 4899999997544
No 73
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=68.26 E-value=43 Score=27.86 Aligned_cols=103 Identities=15% Similarity=0.018 Sum_probs=54.3
Q ss_pred chhhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchh
Q 011608 251 NSSLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDG 330 (481)
Q Consensus 251 ~~~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ 330 (481)
-.++-++|.+.+ ..+||-|.. ........++....+-+++-+++.... ..+..
T Consensus 34 A~~lg~~La~~g---~~lVsGGg~----~Gim~aa~~gAl~~gG~tigVlP~~~~--------------------~~~~~ 86 (176)
T 2iz6_A 34 ANELGKQIATHG---WILLTGGRS----LGVMHEAMKGAKEAGGTTIGVLPGPDT--------------------SEISD 86 (176)
T ss_dssp HHHHHHHHHHTT---CEEEEECSS----SSHHHHHHHHHHHTTCCEEEEECC-------------------------CCT
T ss_pred HHHHHHHHHHCC---CEEEECCCc----cCHhHHHHHHHHHcCCEEEEEeCchhh--------------------hhhcc
Confidence 445666776543 566676641 122345555555566667766643211 01110
Q ss_pred HHhhhcCCCccccccCch-hhhhccccCCceeeecCCchhHHH---HHcCcceeecccc
Q 011608 331 FLTRNAKMGLVVPDWAPQ-VEILGHASVGGFLSHCGWNSTLES---IVNGVPLIVWPLY 385 (481)
Q Consensus 331 ~~~~~~~~~~~v~~~~pq-~~lL~~~~~~~~I~HgG~~s~~ea---l~~GvP~v~~P~~ 385 (481)
..+ ..++.+..++ ..++..-+-..++-=||.||..|+ +.+++|++++|.+
T Consensus 87 ~~~-----~~i~~~~~~~Rk~~m~~~sda~IvlpGg~GTL~E~~~al~~~kpV~~l~~~ 140 (176)
T 2iz6_A 87 AVD-----IPIVTGLGSARDNINALSSNVLVAVGMGPGTAAEVALALKAKKPVVLLGTQ 140 (176)
T ss_dssp TCS-----EEEECCCCSSSCCCCGGGCSEEEEESCCHHHHHHHHHHHHTTCCEEEESCC
T ss_pred CCc-----eeEEcCCHHHHHHHHHHhCCEEEEecCCccHHHHHHHHHHhCCcEEEEcCc
Confidence 000 1223344444 223332233366677899987655 6799999999984
No 74
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=67.68 E-value=7.2 Score=36.14 Aligned_cols=135 Identities=11% Similarity=-0.049 Sum_probs=73.8
Q ss_pred CCcEEEEEeCCC---CCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcC--
Q 011608 263 TESVIYVSFGGG---GTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAK-- 337 (481)
Q Consensus 263 ~~~vv~vs~GS~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~-- 337 (481)
+++.|.+.-||. ..++.+.+.++++.|.+.+.++++..+.+.+ ....+.+..
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e-----------------------~~~~~~i~~~~ 233 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHE-----------------------EERAKRLAEGF 233 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHH-----------------------HHHHHHHHTTC
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHH-----------------------HHHHHHHHhhC
Confidence 345788877775 3467777888888886666666554332110 111111111
Q ss_pred CCcccccc--Cc-hhhhhccccCCceeeecCCchhHHHHHcCcceeec--ccccchhhhHHHHHHhhcee-Eec-cccCC
Q 011608 338 MGLVVPDW--AP-QVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVW--PLYAEQKMNATMLAEELGVA-VRP-NEMPT 410 (481)
Q Consensus 338 ~~~~v~~~--~p-q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~--P~~~DQ~~na~~v~~~~G~g-~~~-~~~~~ 410 (481)
.++.+.+- +. -.+++.+++ ++|+.-. |.++=|.+.|+|+|++ |..... ++ -+|-. ..+ ....-
T Consensus 234 ~~~~l~g~~sl~el~ali~~a~--l~I~~DS-G~~HlAaa~g~P~v~lfg~t~p~~--~~-----P~~~~~~~~~~~~~c 303 (326)
T 2gt1_A 234 AYVEVLPKMSLEGVARVLAGAK--FVVSVDT-GLSHLTAALDRPNITVYGPTDPGL--IG-----GYGKNQMVCRAPGNE 303 (326)
T ss_dssp TTEEECCCCCHHHHHHHHHTCS--EEEEESS-HHHHHHHHTTCCEEEEESSSCHHH--HC-----CCSSSEEEEECGGGC
T ss_pred CcccccCCCCHHHHHHHHHhCC--EEEecCC-cHHHHHHHcCCCEEEEECCCChhh--cC-----CCCCCceEecCCccc
Confidence 12222222 22 367888877 8999842 3455577799999998 321111 00 11111 001 00000
Q ss_pred CCccCHHHHHHHHHHHhcCC
Q 011608 411 ENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 411 ~~~~~~~~l~~al~~vl~~~ 430 (481)
-..++.+++.+++.++|.+-
T Consensus 304 m~~I~~~~V~~~i~~~l~~~ 323 (326)
T 2gt1_A 304 LSQLTANAVKQFIEENAEKA 323 (326)
T ss_dssp GGGCCHHHHHHHHHHTTTTC
T ss_pred ccCCCHHHHHHHHHHHHHHh
Confidence 15689999999999999753
No 75
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=65.88 E-value=4.2 Score=36.89 Aligned_cols=53 Identities=15% Similarity=0.071 Sum_probs=37.9
Q ss_pred cCCceeeecCCchhHHHHHc------CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcC
Q 011608 356 SVGGFLSHCGWNSTLESIVN------GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVD 429 (481)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~------GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~ 429 (481)
.++++|+=||-||+.+++.. ++|.+++|.- .+|. + ..++++++.+++++++.+
T Consensus 35 ~~D~vv~lGGDGT~l~aa~~~~~~~~~~PilGIn~G------------~lgf---l------~~~~~~~~~~~l~~l~~g 93 (272)
T 2i2c_A 35 EPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTG------------HLGF---Y------ADWRPAEADKLVKLLAKG 93 (272)
T ss_dssp SCSEEEEEESHHHHHHHHHHTGGGTTTCEEEEEESS------------SCCS---S------CCBCGGGHHHHHHHHHTT
T ss_pred CCCEEEEEcCcHHHHHHHHHHhhcCCCCCEEEEeCC------------CCCc---C------CcCCHHHHHHHHHHHHcC
Confidence 34599999999999999875 8899988761 1121 1 234567788888877765
No 76
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=65.71 E-value=19 Score=31.33 Aligned_cols=154 Identities=12% Similarity=-0.013 Sum_probs=79.7
Q ss_pred hhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhc
Q 011608 257 WLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNA 336 (481)
Q Consensus 257 ~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~ 336 (481)
|++-. .+.++.|..|.+ ....++.|.+.+..+.++-+. ..+.+.+...
T Consensus 26 fl~L~-gk~VLVVGgG~v-------a~~ka~~Ll~~GA~VtVvap~------------------------~~~~l~~l~~ 73 (223)
T 3dfz_A 26 MLDLK-GRSVLVVGGGTI-------ATRRIKGFLQEGAAITVVAPT------------------------VSAEINEWEA 73 (223)
T ss_dssp EECCT-TCCEEEECCSHH-------HHHHHHHHGGGCCCEEEECSS------------------------CCHHHHHHHH
T ss_pred EEEcC-CCEEEEECCCHH-------HHHHHHHHHHCCCEEEEECCC------------------------CCHHHHHHHH
Confidence 34433 344888877632 345667777778887776421 1123333222
Q ss_pred CCCccccccCchhhhhccccCCceeeecCCchhHHHHHcCcceeecccc-cchhhhHHHH----HHh--hceeEeccccC
Q 011608 337 KMGLVVPDWAPQVEILGHASVGGFLSHCGWNSTLESIVNGVPLIVWPLY-AEQKMNATML----AEE--LGVAVRPNEMP 409 (481)
Q Consensus 337 ~~~~~v~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~-~DQ~~na~~v----~~~--~G~g~~~~~~~ 409 (481)
..++......-+.+.|..++ ++|.--|.-.+.+.++.-.- ..+|+- .|.+..+.-+ +.+ +-+|+.-..
T Consensus 74 ~~~i~~i~~~~~~~dL~~ad--LVIaAT~d~~~N~~I~~~ak-~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~G-- 148 (223)
T 3dfz_A 74 KGQLRVKRKKVGEEDLLNVF--FIVVATNDQAVNKFVKQHIK-NDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDG-- 148 (223)
T ss_dssp TTSCEEECSCCCGGGSSSCS--EEEECCCCTHHHHHHHHHSC-TTCEEEC-----CCSEECCEEEEETTEEEEEECTT--
T ss_pred cCCcEEEECCCCHhHhCCCC--EEEECCCCHHHHHHHHHHHh-CCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECCC--
Confidence 22232222112233455555 88888888777777665433 444442 4554444221 012 223333211
Q ss_pred CCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Q 011608 410 TENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKA 449 (481)
Q Consensus 410 ~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~ 449 (481)
....-+..|++.|++.+- +....+-+.+.+++++++..
T Consensus 149 -~sP~la~~iR~~ie~~lp-~~~~~~~~~~~~~R~~vk~~ 186 (223)
T 3dfz_A 149 -ASPLLTKRIKEDLSSNYD-ESYTQYTQFLYECRVLIHRL 186 (223)
T ss_dssp -SCHHHHHHHHHHHHHHSC-THHHHHHHHHHHHHHHHHHC
T ss_pred -CCcHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHHHHH
Confidence 022346788888888884 34345788888888887765
No 77
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=65.11 E-value=8 Score=31.86 Aligned_cols=107 Identities=8% Similarity=0.031 Sum_probs=64.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh-ccCCCCCCceEEEecCCCCCCCCCCCCccH
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ-LRNLPNPHLFNIVSLPPVDISALLDADASI 82 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 82 (481)
.+.+|++.+.+...|-....-++..|..+ |++|+++......+.+.+. ....+ ++-..+.-. . ..
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~-G~eVi~lG~~~p~e~lv~aa~~~~~---diV~lS~~~-------~---~~ 82 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDA-GFEVVYTGLRQTPEQVAMAAVQEDV---DVIGVSILN-------G---AH 82 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHT-TCEEECCCSBCCHHHHHHHHHHTTC---SEEEEEESS-------S---CH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHHHHhcCC---CEEEEEeec-------h---hh
Confidence 46899999999999999999999999999 9999999765444444433 22222 333333321 0 01
Q ss_pred HHHHHHHHHHhhHHHHHHHhhcC-CCCcEEEEcCCCchHHHHHHHhCCceE
Q 011608 83 VIKIIFMMRESLPALRSSISTLK-PRPTALFADLFGTEAFQIADEFEMLKY 132 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~-~~~D~VI~D~~~~~~~~~A~~~giP~v 132 (481)
. ...+.+.+.|++.. .+.-+++.......-...+++.|+-.+
T Consensus 83 ~--------~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v 125 (161)
T 2yxb_A 83 L--------HLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREI 125 (161)
T ss_dssp H--------HHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEE
T ss_pred H--------HHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEE
Confidence 1 11122333333331 235577777654433445778888744
No 78
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=63.94 E-value=29 Score=34.19 Aligned_cols=107 Identities=17% Similarity=0.063 Sum_probs=62.5
Q ss_pred ccccCchhh---hhccccCCceee---ecCCc-hhHHHHHcCc-----ceeecccccchhhhHHHHHHhhceeEeccccC
Q 011608 342 VPDWAPQVE---ILGHASVGGFLS---HCGWN-STLESIVNGV-----PLIVWPLYAEQKMNATMLAEELGVAVRPNEMP 409 (481)
Q Consensus 342 v~~~~pq~~---lL~~~~~~~~I~---HgG~~-s~~eal~~Gv-----P~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~ 409 (481)
+.+++|+.+ ++..++ +||. .=|+| +..||+++|+ |+|+--+.+ .+..+ .-|+.+++
T Consensus 336 ~~g~v~~~el~~ly~~AD--v~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G----~~~~l----~~g~lv~p-- 403 (482)
T 1uqt_A 336 LNQHFDRKLLMKIFRYSD--VGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAG----AANEL----TSALIVNP-- 403 (482)
T ss_dssp ECSCCCHHHHHHHHHHCS--EEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBG----GGGTC----TTSEEECT--
T ss_pred eCCCCCHHHHHHHHHHcc--EEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCC----CHHHh----CCeEEECC--
Confidence 357777754 555666 5553 34665 8899999998 666544332 11111 23556553
Q ss_pred CCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 011608 410 TENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEMS 470 (481)
Q Consensus 410 ~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 470 (481)
-+.++++++|.++|+++.. .-+++.++.++.+ .+ -+...-++.+++.++..
T Consensus 404 ----~d~~~lA~ai~~lL~~~~~-~r~~~~~~~~~~v----~~-~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 404 ----YDRDEVAAALDRALTMSLA-ERISRHAEMLDVI----VK-NDINHWQECFISDLKQI 454 (482)
T ss_dssp ----TCHHHHHHHHHHHHTCCHH-HHHHHHHHHHHHH----HH-TCHHHHHHHHHHHHHHS
T ss_pred ----CCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHH----Hh-CCHHHHHHHHHHHHHhc
Confidence 3789999999999986431 1233344444443 22 34555666666665443
No 79
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=63.05 E-value=77 Score=27.60 Aligned_cols=110 Identities=9% Similarity=-0.003 Sum_probs=61.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccH
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASI 82 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 82 (481)
.++||+|+..++.. -+..+.++|.+.. +++|..+.+......+.+.... .++.+..++...+.. .
T Consensus 21 ~~~rI~~l~SG~g~---~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~----~gIp~~~~~~~~~~~-----r-- 86 (229)
T 3auf_A 21 HMIRIGVLISGSGT---NLQAILDGCREGRIPGRVAVVISDRADAYGLERARR----AGVDALHMDPAAYPS-----R-- 86 (229)
T ss_dssp TCEEEEEEESSCCH---HHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHH----TTCEEEECCGGGSSS-----H--
T ss_pred CCcEEEEEEeCCcH---HHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHH----cCCCEEEECcccccc-----h--
Confidence 34799998766532 3667777887652 4788777665322222211111 245555544211110 0
Q ss_pred HHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCC-CchHHHHHHHhCCceEEEech
Q 011608 83 VIKIIFMMRESLPALRSSISTLKPRPTALFADLF-GTEAFQIADEFEMLKYVYIAS 137 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~-~~~~~~~A~~~giP~v~~~~~ 137 (481)
....+.+.+.|++. +||+||.=.+ -.-...+-..+...++-++++
T Consensus 87 --------~~~~~~~~~~l~~~--~~Dliv~agy~~IL~~~~l~~~~~~~iNiHpS 132 (229)
T 3auf_A 87 --------TAFDAALAERLQAY--GVDLVCLAGYMRLVRGPMLTAFPNRILNIHPS 132 (229)
T ss_dssp --------HHHHHHHHHHHHHT--TCSEEEESSCCSCCCHHHHHHSTTCEEEEESS
T ss_pred --------hhccHHHHHHHHhc--CCCEEEEcChhHhCCHHHHhhccCCEEEEccC
Confidence 11224566778888 9999886543 333445566676777777764
No 80
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=61.81 E-value=37 Score=30.41 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=32.8
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEecCCC
Q 011608 4 TKTHIALLAS--PGMGHFIPVLELGKRFATQNDFQVTIFVVATD 45 (481)
Q Consensus 4 ~~~~vvl~~~--p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (481)
.++++++++. |+.|-..-...||..|++. |.+|.++-....
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~-G~rVLLID~D~~ 122 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQA-GYKTLIVDGDMR 122 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCSS
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCC
Confidence 3456666653 6889999999999999999 999999876643
No 81
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=59.69 E-value=12 Score=29.67 Aligned_cols=46 Identities=20% Similarity=0.113 Sum_probs=38.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhh
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQS 51 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~ 51 (481)
+.+|++.+.+.-+|-....-++..|..+ |++|+++......+.+.+
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~-G~~Vi~lG~~~p~e~~v~ 48 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNA-GFNVVNIGVLSPQELFIK 48 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHT-TCEEEEEEEEECHHHHHH
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHH
Confidence 3689999999999999999999999999 999999877544344333
No 82
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=59.47 E-value=92 Score=27.85 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=25.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
|||+++ ++.|.+ --+|+++|.++ ||+|+.++-.+
T Consensus 1 MkILVT--GatGfI--G~~L~~~L~~~-G~~V~~l~R~~ 34 (298)
T 4b4o_A 1 MRVLVG--GGTGFI--GTALTQLLNAR-GHEVTLVSRKP 34 (298)
T ss_dssp CEEEEE--TTTSHH--HHHHHHHHHHT-TCEEEEEESSC
T ss_pred CEEEEE--CCCCHH--HHHHHHHHHHC-CCEEEEEECCC
Confidence 676654 566655 35789999999 99999998543
No 83
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=57.08 E-value=65 Score=29.91 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=34.4
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEecCCCch
Q 011608 6 THIALLAS-PGMGHFIPVLELGKRFATQNDFQVTIFVVATDTS 47 (481)
Q Consensus 6 ~~vvl~~~-p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (481)
++|+|++. ++.|-..-...||..|+++ |++|.++...+...
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~-g~~vllid~D~~~~ 57 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKV-RRSVLLLSTDPAHN 57 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTS-SSCEEEEECCSSCH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhC-CCcEEEEECCCCCC
Confidence 55666654 8889999999999999999 99999999886543
No 84
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=57.07 E-value=53 Score=28.31 Aligned_cols=107 Identities=8% Similarity=0.039 Sum_probs=57.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCC--eEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDF--QVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIV 83 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh--~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (481)
+||+++..++.+ -+..+.++|.+. +| +|..+.+.+....+.+.... .++.+..++..... +
T Consensus 2 ~rI~vl~SG~g~---~~~~~l~~l~~~-~~~~~i~~Vvs~~~~~~~~~~A~~----~gIp~~~~~~~~~~-------~-- 64 (216)
T 2ywr_A 2 LKIGVLVSGRGS---NLQAIIDAIESG-KVNASIELVISDNPKAYAIERCKK----HNVECKVIQRKEFP-------S-- 64 (216)
T ss_dssp EEEEEEECSCCH---HHHHHHHHHHTT-SSCEEEEEEEESCTTCHHHHHHHH----HTCCEEECCGGGSS-------S--
T ss_pred CEEEEEEeCCcH---HHHHHHHHHHhC-CCCCeEEEEEeCCCChHHHHHHHH----cCCCEEEeCccccc-------c--
Confidence 578888655432 367777888887 78 77766655332222211111 13444444321111 0
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCC-CchHHHHHHHhCCceEEEech
Q 011608 84 IKIIFMMRESLPALRSSISTLKPRPTALFADLF-GTEAFQIADEFEMLKYVYIAS 137 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~-~~~~~~~A~~~giP~v~~~~~ 137 (481)
.....+.+.+.|++. ++|++|.=.+ -.-...+-+.+...++-++++
T Consensus 65 ------r~~~~~~~~~~l~~~--~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 111 (216)
T 2ywr_A 65 ------KKEFEERMALELKKK--GVELVVLAGFMRILSHNFLKYFPNKVINIHPS 111 (216)
T ss_dssp ------HHHHHHHHHHHHHHT--TCCEEEESSCCSCCCHHHHTTSTTCEEEEESS
T ss_pred ------hhhhhHHHHHHHHhc--CCCEEEEeCchhhCCHHHHhhccCCeEEEcCC
Confidence 011223566778888 9999885433 233344445555567776664
No 85
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=56.72 E-value=82 Score=25.89 Aligned_cols=145 Identities=13% Similarity=0.143 Sum_probs=78.3
Q ss_pred cEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccc
Q 011608 265 SVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPD 344 (481)
Q Consensus 265 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~ 344 (481)
|.|-|-+||. .+-+..+++...|+..+.++=..+-+. ...|+.+.+
T Consensus 12 ~~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~dv~V~Sa---------------------HR~p~~l~~----------- 57 (170)
T 1xmp_A 12 SLVGVIMGST--SDWETMKYACDILDELNIPYEKKVVSA---------------------HRTPDYMFE----------- 57 (170)
T ss_dssp CSEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCT---------------------TTSHHHHHH-----------
T ss_pred CcEEEEECcH--HHHHHHHHHHHHHHHcCCCEEEEEEec---------------------cCCHHHHHH-----------
Confidence 3566667763 456678889999999998876655332 345553322
Q ss_pred cCchhhhhccccCCceeeecCCchhHHHH---HcCcceeecccccc--hhhhHHHHH-Hh--hceeEe-ccccCCCCccC
Q 011608 345 WAPQVEILGHASVGGFLSHCGWNSTLESI---VNGVPLIVWPLYAE--QKMNATMLA-EE--LGVAVR-PNEMPTENLVK 415 (481)
Q Consensus 345 ~~pq~~lL~~~~~~~~I~HgG~~s~~eal---~~GvP~v~~P~~~D--Q~~na~~v~-~~--~G~g~~-~~~~~~~~~~~ 415 (481)
|+.+.+ ...++++|.=.|.-.-.-.+ ..-+|+|.+|.... +...+ .+. -+ .|+.+. +.+ ++-+-.+
T Consensus 58 ~~~~a~---~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~da-LlSivqmP~GvpVatV~I-~~a~~~n 132 (170)
T 1xmp_A 58 YAETAR---ERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDS-LLSIVQMPGGVPVATVAI-GKAGSTN 132 (170)
T ss_dssp HHHHTT---TTTCCEEEEEEESSCCHHHHHHTTCCSCEEEEEECCTTTTTHHH-HHHHHCCCTTCCCEECCS-SHHHHHH
T ss_pred HHHHHH---hCCCcEEEEECCchhhhHHHHHhccCCCEEEeeCCCCCCCcHHH-HHHHhcCCCCCeeEEEec-CCcchHH
Confidence 111111 11133677666544333322 34689999999642 22222 221 14 455432 121 0002345
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Q 011608 416 REEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTK 452 (481)
Q Consensus 416 ~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~ 452 (481)
+.-++..|. -+.|+. ++++.+.++++.+..+.+
T Consensus 133 AallAaqIl-a~~d~~---l~~kl~~~r~~~~~~v~~ 165 (170)
T 1xmp_A 133 AGLLAAQIL-GSFHDD---IHDALELRREAIEKDVRE 165 (170)
T ss_dssp HHHHHHHHH-HTTCHH---HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-ccCCHH---HHHHHHHHHHHHHHHHHh
Confidence 666665553 445666 888888888886655443
No 86
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=56.41 E-value=20 Score=31.98 Aligned_cols=48 Identities=15% Similarity=0.051 Sum_probs=40.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
.+.+|++.+.++..|-....-++..|..+ |++|+++...-..+.+...
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~-G~~Vi~LG~~vp~e~l~~~ 169 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRAN-GYNVVDLGRDVPAEEVLAA 169 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHT-TCEEEEEEEECCSHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHH
Confidence 45789999999999999999999999999 9999999876444444333
No 87
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=56.33 E-value=44 Score=30.43 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=32.1
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEecCCC
Q 011608 4 TKTHIALLAS--PGMGHFIPVLELGKRFATQNDFQVTIFVVATD 45 (481)
Q Consensus 4 ~~~~vvl~~~--p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (481)
.++++++++. |+.|=..-...||..|++. |.+|.++-....
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~-G~rVLLID~D~r 144 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQS-DQKVLFIDADLR 144 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHT-TCCEEEEECCTT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhC-CCcEEEEECCCC
Confidence 3445555543 6889999999999999999 999999876643
No 88
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=54.68 E-value=16 Score=31.49 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=39.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
.+.+|++.+.++..|-....-++..|..+ |++|.++...-..+.+...
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~-G~~v~~LG~~vp~~~l~~~ 134 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESG-GFTVYNLGVDIEPGKFVEA 134 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHT-TCEEEECCSSBCHHHHHHH
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHH
Confidence 34689999999999999999999999999 9999999876444444333
No 89
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=53.96 E-value=20 Score=31.06 Aligned_cols=48 Identities=15% Similarity=0.052 Sum_probs=40.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
.+.+|++.+.++..|-....-++..|..+ |++|+++...-..+.+.+.
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~-G~~Vi~LG~~vp~e~iv~~ 138 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGAN-GFQIVDLGVDVLNENVVEE 138 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHT-SCEEEECCSSCCHHHHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHC-CCeEEEcCCCCCHHHHHHH
Confidence 35799999999999999999999999999 9999999876555554443
No 90
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=53.63 E-value=8.1 Score=34.65 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=38.2
Q ss_pred CCceeeecCCchhHHHHHc---CcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 357 VGGFLSHCGWNSTLESIVN---GVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~---GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
++++|+=||-||+.+++.. ++|.++++. + .+ |.. ..+.++++.++++.++.++
T Consensus 42 ~D~vv~~GGDGTll~~a~~~~~~~PilGIn~-G-----------~~--Gfl-------~~~~~~~~~~al~~i~~g~ 97 (258)
T 1yt5_A 42 ADLIVVVGGDGTVLKAAKKAADGTPMVGFKA-G-----------RL--GFL-------TSYTLDEIDRFLEDLRNWN 97 (258)
T ss_dssp CSEEEEEECHHHHHHHHTTBCTTCEEEEEES-S-----------SC--CSS-------CCBCGGGHHHHHHHHHTTC
T ss_pred CCEEEEEeCcHHHHHHHHHhCCCCCEEEEEC-C-----------CC--Ccc-------CcCCHHHHHHHHHHHHcCC
Confidence 4599999999999999887 788888863 2 11 211 2245778888888887653
No 91
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=52.35 E-value=89 Score=30.82 Aligned_cols=110 Identities=12% Similarity=0.005 Sum_probs=68.1
Q ss_pred ccccccCchh---hhhccccCCceee--ecCCch-hHHHHHcC---cceeecccccchhhhHHHHHHhhc-eeEeccccC
Q 011608 340 LVVPDWAPQV---EILGHASVGGFLS--HCGWNS-TLESIVNG---VPLIVWPLYAEQKMNATMLAEELG-VAVRPNEMP 409 (481)
Q Consensus 340 ~~v~~~~pq~---~lL~~~~~~~~I~--HgG~~s-~~eal~~G---vP~v~~P~~~DQ~~na~~v~~~~G-~g~~~~~~~ 409 (481)
++..+.+|+. +++..+++ ++++ .=|+|- ..|++++| .|.|+--+.+ .+. .+| -|+.+++
T Consensus 354 V~f~g~v~~~el~aly~~ADv-~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aG----a~~----~l~~~allVnP-- 422 (496)
T 3t5t_A 354 VRIDNDNDVNHTIACFRRADL-LIFNSTVDGQNLSTFEAPLVNERDADVILSETCG----AAE----VLGEYCRSVNP-- 422 (496)
T ss_dssp EEEEECCCHHHHHHHHHHCSE-EEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBT----THH----HHGGGSEEECT--
T ss_pred EEEeCCCCHHHHHHHHHhccE-EEECcccccCChhHHHHHHhCCCCCCEEEeCCCC----CHH----HhCCCEEEECC--
Confidence 5555777764 45556664 3333 468885 58999996 5655543332 222 233 4677764
Q ss_pred CCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 011608 410 TENLVKREEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEMS 470 (481)
Q Consensus 410 ~~~~~~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 470 (481)
-+.++++++|.++|+++.. .-+++.+++.+.+ . .-+...-++.|++++...
T Consensus 423 ----~D~~~lA~AI~~aL~m~~~-er~~r~~~~~~~V----~-~~d~~~W~~~fl~~L~~~ 473 (496)
T 3t5t_A 423 ----FDLVEQAEAISAALAAGPR-QRAEAAARRRDAA----R-PWTLEAWVQAQLDGLAAD 473 (496)
T ss_dssp ----TBHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHH----T-TCBHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHH----H-HCCHHHHHHHHHHHHhhc
Confidence 3899999999999987531 1444555555553 2 246667777777777654
No 92
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=51.79 E-value=59 Score=29.39 Aligned_cols=40 Identities=10% Similarity=0.257 Sum_probs=31.7
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEecCCC
Q 011608 5 KTHIALLAS--PGMGHFIPVLELGKRFATQNDFQVTIFVVATD 45 (481)
Q Consensus 5 ~~~vvl~~~--p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (481)
+.++++++. |+.|-..-...||..|++. |.+|.++-....
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~-G~rVLLID~D~~ 132 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQT-NKRVLLIDCDMR 132 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTT-TCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhC-CCCEEEEeccCC
Confidence 345555443 6889999999999999999 999999976644
No 93
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=51.36 E-value=34 Score=33.29 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=37.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
-+++..-|+.|-..=.+++|...+.+ |..|.|++.+.....+..+
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms~~ql~~R 243 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKENIKR 243 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSCTTHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCCHHHHHHH
Confidence 46777779999999999999999999 9999999999766554443
No 94
>3pnx_A Putative sulfurtransferase DSRE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE GOL; 1.92A {Syntrophomonas wolfei}
Probab=51.28 E-value=16 Score=29.95 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=36.4
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
|++.++-|++++ +..--.+|.+-+|..-+.. |++|+++.+..-...
T Consensus 2 m~~~kl~II~~s-G~~dka~~a~ilA~~AaA~-G~eV~iFfTf~Gl~~ 47 (160)
T 3pnx_A 2 MENKKMNLLLFS-GDYDKALASLIIANAAREM-EIEVTIFCAFWGLLL 47 (160)
T ss_dssp CTTCEEEEEECC-CCHHHHHHHHHHHHHHHHT-TCEEEEEECGGGGGG
T ss_pred CCCCcEEEEEec-CCHHHHHHHHHHHHHHHHc-CCCEEEEEeehhHHH
Confidence 677766666665 5677889999999999999 999999998844433
No 95
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=50.39 E-value=18 Score=31.13 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=36.3
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCch
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTS 47 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (481)
|... .||++--.++.|-+. ...|.++|.++ |++|.++.++....
T Consensus 1 m~~~-k~IllgvTGaiaa~k-~~~ll~~L~~~-g~eV~vv~T~~A~~ 44 (209)
T 3zqu_A 1 MSGP-ERITLAMTGASGAQY-GLRLLDCLVQE-EREVHFLISKAAQL 44 (209)
T ss_dssp CCSC-SEEEEEECSSSCHHH-HHHHHHHHHHT-TCEEEEEECHHHHH
T ss_pred CCCC-CEEEEEEECHHHHHH-HHHHHHHHHHC-CCEEEEEECccHHH
Confidence 5555 688888888888777 89999999999 99999999984443
No 96
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=49.67 E-value=1.1e+02 Score=25.40 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=80.0
Q ss_pred cEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccc
Q 011608 265 SVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPD 344 (481)
Q Consensus 265 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~ 344 (481)
|.|-|-+||. .+-+..+++...|+..+.++=..+-+. ...|+.+.+
T Consensus 14 ~~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~dv~V~Sa---------------------HR~p~~l~~----------- 59 (183)
T 1o4v_A 14 PRVGIIMGSD--SDLPVMKQAAEILEEFGIDYEITIVSA---------------------HRTPDRMFE----------- 59 (183)
T ss_dssp CEEEEEESCG--GGHHHHHHHHHHHHHTTCEEEEEECCT---------------------TTCHHHHHH-----------
T ss_pred CeEEEEeccH--HHHHHHHHHHHHHHHcCCCeEEEEEcc---------------------cCCHHHHHH-----------
Confidence 4677777763 456678889999999998876665332 345553322
Q ss_pred cCchhhhhccccCCceeeecCCc----hhHHHHHcCcceeecccccc--hhhhHHHHHHhh--ceeEeccccCCCCccCH
Q 011608 345 WAPQVEILGHASVGGFLSHCGWN----STLESIVNGVPLIVWPLYAE--QKMNATMLAEEL--GVAVRPNEMPTENLVKR 416 (481)
Q Consensus 345 ~~pq~~lL~~~~~~~~I~HgG~~----s~~eal~~GvP~v~~P~~~D--Q~~na~~v~~~~--G~g~~~~~~~~~~~~~~ 416 (481)
|+.+.+ ...++++|.=.|.- ++.-+ ..-+|+|.+|.... ....+-.-.-+. |+.+.. ...++..++
T Consensus 60 ~~~~a~---~~g~~ViIa~AG~aa~LpgvvA~-~t~~PVIgVP~~~~~l~G~dsLlSivqmP~GvpVat--V~Id~~~nA 133 (183)
T 1o4v_A 60 YAKNAE---ERGIEVIIAGAGGAAHLPGMVAS-ITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVAT--VAINNAKNA 133 (183)
T ss_dssp HHHHTT---TTTCCEEEEEEESSCCHHHHHHH-HCSSCEEEEEECCTTTTTHHHHHHHHTCCTTCCCEE--CCTTCHHHH
T ss_pred HHHHHH---hCCCcEEEEecCcccccHHHHHh-ccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCeeEE--EecCCchHH
Confidence 111111 11233677665543 33333 36799999999642 222221111144 533221 111245677
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh
Q 011608 417 EEIEMMVRRILVDKEGQALRSRVKELKHSAKKAST 451 (481)
Q Consensus 417 ~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~ 451 (481)
.-++..|. -+.|+. ++++.+.+++..+..+.
T Consensus 134 a~lAaqIl-a~~d~~---l~~kL~~~r~~~~~~v~ 164 (183)
T 1o4v_A 134 GILAASIL-GIKYPE---IARKVKEYKERMKREVL 164 (183)
T ss_dssp HHHHHHHH-HTTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCHH---HHHHHHHHHHHHHHHHH
Confidence 77776664 455666 88888888887655433
No 97
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=49.12 E-value=56 Score=30.52 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=33.3
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc
Q 011608 6 THIALLAS-PGMGHFIPVLELGKRFATQNDFQVTIFVVATDT 46 (481)
Q Consensus 6 ~~vvl~~~-p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (481)
.+|++++. ++.|-..-..+||..|+++ |++|.++......
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlvD~D~~~ 66 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAEK-GLKVVIVSTDPAH 66 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHS-SCCEEEEECCTTC
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence 44555544 7889999999999999999 9999999998743
No 98
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=48.12 E-value=1.3e+02 Score=25.71 Aligned_cols=109 Identities=11% Similarity=-0.011 Sum_probs=60.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVI 84 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (481)
+||+++-.+..+ -+..|.+++.+.. +|+|..+.+.+......+.... .++.+..++.....+
T Consensus 1 ~ri~vl~Sg~gs---nl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~----~gIp~~~~~~~~~~~---------- 63 (212)
T 1jkx_A 1 MNIVVLISGNGS---NLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQ----AGIATHTLIASAFDS---------- 63 (212)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHH----TTCEEEECCGGGCSS----------
T ss_pred CEEEEEEECCcH---HHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHH----cCCcEEEeCcccccc----------
Confidence 467777655543 3667777777653 5888877766433222221111 245555543211110
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCC-CchHHHHHHHhCCceEEEechh
Q 011608 85 KIIFMMRESLPALRSSISTLKPRPTALFADLF-GTEAFQIADEFEMLKYVYIASN 138 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~-~~~~~~~A~~~giP~v~~~~~~ 138 (481)
.....+.+.+.+++. ++|+||.=.+ -.-...+-..+...++-++++.
T Consensus 64 -----r~~~~~~~~~~l~~~--~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSl 111 (212)
T 1jkx_A 64 -----REAYDRELIHEIDMY--APDVVVLAGFMRILSPAFVSHYAGRLLNIHPSL 111 (212)
T ss_dssp -----HHHHHHHHHHHHGGG--CCSEEEESSCCSCCCHHHHHHTTTSEEEEESSC
T ss_pred -----hhhccHHHHHHHHhc--CCCEEEEeChhhhCCHHHHhhccCCEEEEccCc
Confidence 011224566778888 9999886543 3334455566777777777643
No 99
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=47.51 E-value=24 Score=30.20 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=35.1
Q ss_pred CCCCCcEEEEEcCCCccCHH-HHHHHHHHHHhCCCCeEEEEecCCCch
Q 011608 1 MQTTKTHIALLASPGMGHFI-PVLELGKRFATQNDFQVTIFVVATDTS 47 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~-P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (481)
|.-+..||++--.++ +..+ =.+.|.++|.++ |++|.++.++....
T Consensus 3 m~l~~k~I~lgiTGs-~aa~~k~~~ll~~L~~~-g~eV~vv~T~~A~~ 48 (201)
T 3lqk_A 3 MNFAGKHVGFGLTGS-HCTYHEVLPQMERLVEL-GAKVTPFVTHTVQT 48 (201)
T ss_dssp CCCTTCEEEEECCSC-GGGGGGTHHHHHHHHHT-TCEEEEECSSCSCC
T ss_pred CCcCCCEEEEEEECh-HHHHHHHHHHHHHHhhC-CCEEEEEEChhHHH
Confidence 444456888887777 4555 789999999999 99999999985443
No 100
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=46.20 E-value=37 Score=33.01 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=37.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhh
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTV 49 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~ 49 (481)
+.-|+++..++.|-..-...||..|+++ |++|.++....+....
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~-G~kVllv~~D~~R~aa 143 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR-GYKVGVVCSDTWRPGA 143 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCCSSTHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcchhH
Confidence 3466777778999999999999999999 9999999988776543
No 101
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=45.16 E-value=26 Score=30.21 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=33.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCch
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTS 47 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (481)
.||++.-.++.+-+. ...|.+.|.++ | +|.++.++....
T Consensus 20 k~IllgvTGsiaa~k-~~~ll~~L~~~-g-~V~vv~T~~A~~ 58 (209)
T 1mvl_A 20 PRVLLAASGSVAAIK-FGNLCHCFTEW-A-EVRAVVTKSSLH 58 (209)
T ss_dssp CEEEEEECSSGGGGG-HHHHHHHHHTT-S-EEEEEECTGGGG
T ss_pred CEEEEEEeCcHHHHH-HHHHHHHHhcC-C-CEEEEEcchHHH
Confidence 689999989888776 89999999999 8 999999995443
No 102
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=44.86 E-value=1.3e+02 Score=24.76 Aligned_cols=144 Identities=13% Similarity=0.174 Sum_probs=74.1
Q ss_pred CcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCcccc
Q 011608 264 ESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVP 343 (481)
Q Consensus 264 ~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~ 343 (481)
.|.|-|-+||. .+-+..++....|+..+..+=..+-+. +..|+.+.+
T Consensus 12 ~P~V~IimGS~--SD~~v~~~a~~~l~~~gi~~ev~V~sa---------------------HR~p~~l~~---------- 58 (173)
T 4grd_A 12 APLVGVLMGSS--SDWDVMKHAVAILQEFGVPYEAKVVSA---------------------HRMPDEMFD---------- 58 (173)
T ss_dssp SCSEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCT---------------------TTSHHHHHH----------
T ss_pred CCeEEEEeCcH--hHHHHHHHHHHHHHHcCCCEEEEEEcc---------------------ccCHHHHHH----------
Confidence 34577777763 456678889999999998876555332 345553322
Q ss_pred ccCchhhhhccccCCceeeecC-Cc---hhHHHHHcCcceeecccccchh--hhH-HHHHHhh--ceeEeccccCCCCcc
Q 011608 344 DWAPQVEILGHASVGGFLSHCG-WN---STLESIVNGVPLIVWPLYAEQK--MNA-TMLAEEL--GVAVRPNEMPTENLV 414 (481)
Q Consensus 344 ~~~pq~~lL~~~~~~~~I~HgG-~~---s~~eal~~GvP~v~~P~~~DQ~--~na-~~v~~~~--G~g~~~~~~~~~~~~ 414 (481)
|+-... .-.++++|.-.| .+ ++.- -..-+|+|.+|....-. ..+ .-++ +. |+.+..--.++....
T Consensus 59 -~~~~a~---~~g~~ViIa~AG~aahLpgvvA-~~t~~PVIgVPv~~~~l~G~dsLlSiv-qMP~Gvpvatv~i~~~~a~ 132 (173)
T 4grd_A 59 -YAEKAR---ERGLRAIIAGAGGAAHLPGMLA-AKTTVPVLGVPVASKYLKGVDSLHSIV-QMPKGVPVATFAIGEAGAA 132 (173)
T ss_dssp -HHHHHT---TTTCSEEEEEEESSCCHHHHHH-HHCCSCEEEEEECCTTTTTHHHHHHHH-CCCTTSCCEECCSSHHHHH
T ss_pred -HHHHHH---hcCCeEEEEeccccccchhhhe-ecCCCCEEEEEcCCCCCCchhHHHHHH-hCCCCCCceEEecCCcchH
Confidence 111111 112335665444 32 3333 34579999999864321 111 1111 22 443321101000223
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Q 011608 415 KREEIEMMVRRILVDKEGQALRSRVKELKHSAKKAS 450 (481)
Q Consensus 415 ~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~ 450 (481)
++.-++..| -.+.|+. ++++.++++++.+..+
T Consensus 133 NAallA~~I-La~~d~~---l~~kl~~~r~~~~~~v 164 (173)
T 4grd_A 133 NAALFAVSI-LSGNSVD---YANRLAAFRVRQNEAA 164 (173)
T ss_dssp HHHHHHHHH-HTTSCHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCCHH---HHHHHHHHHHHHHHHH
Confidence 444454444 2345665 8888888888765543
No 103
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=44.10 E-value=33 Score=29.95 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=37.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDT 46 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (481)
+++|++..-|+.|-..-++.+|..|.++ |++|.++..++..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~q~ 46 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVETHG 46 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCTT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCCCC
Confidence 5889999999999999999999999999 9999988887643
No 104
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=43.34 E-value=1.9e+02 Score=28.55 Aligned_cols=94 Identities=15% Similarity=0.107 Sum_probs=53.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh----ccCCCCCCceEEEecCCCCCCCCCCCCcc
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ----LRNLPNPHLFNIVSLPPVDISALLDADAS 81 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 81 (481)
.+++++. .-.-.+.|++.|.+. |.+|+.+..........+. +...+.+.+.... .+
T Consensus 361 krv~i~g-----d~~~~~~la~~L~El-Gm~vv~v~~~~~~~~~~~~~~~ll~~~~~~~~~~v~------------~~-- 420 (519)
T 1qgu_B 361 KKFGLYG-----DPDFVMGLTRFLLEL-GCEPTVILSHNANKRWQKAMNKMLDASPYGRDSEVF------------IN-- 420 (519)
T ss_dssp CEEEEES-----CHHHHHHHHHHHHHT-TCEEEEEEETTCCHHHHHHHHHHHHHSTTCTTCEEE------------ES--
T ss_pred CEEEEEC-----CchHHHHHHHHHHHC-CCEEEEEEeCCCCHHHHHHHHHHHHhcCCCCCCEEE------------EC--
Confidence 3566663 344566788888888 8998877766433322111 1111100000000 00
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCchHHHHHHHh-------CCceEEE
Q 011608 82 IVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTEAFQIADEF-------EMLKYVY 134 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~-------giP~v~~ 134 (481)
.-...+.+++++. +||++|.+.. ...+|+++ |||++.+
T Consensus 421 ----------~d~~~l~~~i~~~--~pDLiig~~~---~~~~a~~~~~~g~~~gip~v~i 465 (519)
T 1qgu_B 421 ----------CDLWHFRSLMFTR--QPDFMIGNSY---GKFIQRDTLAKGKAFEVPLIRL 465 (519)
T ss_dssp ----------CCHHHHHHHHHHH--CCSEEEECGG---GHHHHHHHHHHCGGGCCCEEEC
T ss_pred ----------CCHHHHHHHHhhc--CCCEEEECcc---hHHHHHHhhcccccCCCCeEEe
Confidence 0123455667777 9999998863 46678888 9999864
No 105
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=42.77 E-value=1.6e+02 Score=25.15 Aligned_cols=108 Identities=9% Similarity=0.010 Sum_probs=58.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVI 84 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (481)
++|+++-.++.+ -+..+.++|.+.. +|+|..+.+.+....+...... .++.+..++..... .
T Consensus 4 ~ki~vl~sG~g~---~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~----~gIp~~~~~~~~~~-----~----- 66 (212)
T 3av3_A 4 KRLAVFASGSGT---NFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAAR----ENVPAFVFSPKDYP-----S----- 66 (212)
T ss_dssp EEEEEECCSSCH---HHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHH----TTCCEEECCGGGSS-----S-----
T ss_pred cEEEEEEECCcH---HHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHH----cCCCEEEeCccccc-----c-----
Confidence 578777656533 3566777887653 4888877766332222221111 13445444321111 0
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCC-CchHHHHHHHhCCceEEEech
Q 011608 85 KIIFMMRESLPALRSSISTLKPRPTALFADLF-GTEAFQIADEFEMLKYVYIAS 137 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~-~~~~~~~A~~~giP~v~~~~~ 137 (481)
.....+.+.+.+++. +||++|.=.+ -.-...+-..+...++-++++
T Consensus 67 -----~~~~~~~~~~~l~~~--~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 113 (212)
T 3av3_A 67 -----KAAFESEILRELKGR--QIDWIALAGYMRLIGPTLLSAYEGKIVNIHPS 113 (212)
T ss_dssp -----HHHHHHHHHHHHHHT--TCCEEEESSCCSCCCHHHHHHTTTCEEEEESS
T ss_pred -----hhhhHHHHHHHHHhc--CCCEEEEchhhhhCCHHHHhhhcCCEEEEecC
Confidence 011223556778888 9999885543 333445566677777777764
No 106
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=42.27 E-value=29 Score=28.95 Aligned_cols=41 Identities=2% Similarity=0.006 Sum_probs=33.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
.||++.-.++.|=+. ...+.+.|+++ |++|.++.++.....
T Consensus 6 k~IllgvTGs~aa~k-~~~ll~~L~~~-g~~V~vv~T~~A~~f 46 (175)
T 3qjg_A 6 ENVLICLCGSVNSIN-ISHYIIELKSK-FDEVNVIASTNGRKF 46 (175)
T ss_dssp CEEEEEECSSGGGGG-HHHHHHHHTTT-CSEEEEEECTGGGGG
T ss_pred CEEEEEEeCHHHHHH-HHHHHHHHHHC-CCEEEEEECcCHHHH
Confidence 478888778776665 88999999999 999999999954443
No 107
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=41.98 E-value=42 Score=26.38 Aligned_cols=40 Identities=5% Similarity=-0.051 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCcEEEEcCCCch--HHHHHHHh-------CCceEEEec
Q 011608 95 PALRSSISTLKPRPTALFADLFGTE--AFQIADEF-------EMLKYVYIA 136 (481)
Q Consensus 95 ~~~~~~l~~~~~~~D~VI~D~~~~~--~~~~A~~~-------giP~v~~~~ 136 (481)
....+.+++. +||+||.|...+. +..++++. ++|++.++.
T Consensus 47 ~~al~~~~~~--~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa 95 (134)
T 3to5_A 47 LTALPMLKKG--DFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITA 95 (134)
T ss_dssp HHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEES
T ss_pred HHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEEC
No 108
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=40.31 E-value=82 Score=29.78 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=32.1
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc
Q 011608 6 THIALLAS-PGMGHFIPVLELGKRFATQNDFQVTIFVVATDT 46 (481)
Q Consensus 6 ~~vvl~~~-p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (481)
++|++++. ++.|-..-...||..|+++ |++|.++.. +..
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~-g~~vllvd~-~~~ 41 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQ-GKRVLLAGL-AEP 41 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHT-TCCEEEEEC-SCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCeEEEeC-CCC
Confidence 45666655 6779999999999999999 999999998 544
No 109
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=40.08 E-value=1.8e+02 Score=24.96 Aligned_cols=108 Identities=11% Similarity=0.023 Sum_probs=56.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccH
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFAT-QNDFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASI 82 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~-r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 82 (481)
.++||+++..++.+.+.. |.+++.+ . +++|..+.+.+.....+.+ .. .++.+..++..... +
T Consensus 11 ~~~ri~vl~SG~gsnl~a---ll~~~~~~~-~~eI~~Vis~~~a~~~~~A-~~----~gIp~~~~~~~~~~-------~- 73 (215)
T 3da8_A 11 APARLVVLASGTGSLLRS---LLDAAVGDY-PARVVAVGVDRECRAAEIA-AE----ASVPVFTVRLADHP-------S- 73 (215)
T ss_dssp SSEEEEEEESSCCHHHHH---HHHHSSTTC-SEEEEEEEESSCCHHHHHH-HH----TTCCEEECCGGGSS-------S-
T ss_pred CCcEEEEEEeCChHHHHH---HHHHHhccC-CCeEEEEEeCCchHHHHHH-HH----cCCCEEEeCccccc-------c-
Confidence 357898887666544443 4444432 3 5688888776553322221 11 13444444311100 0
Q ss_pred HHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEc-CCCchHHHHHHHhCCceEEEech
Q 011608 83 VIKIIFMMRESLPALRSSISTLKPRPTALFAD-LFGTEAFQIADEFEMLKYVYIAS 137 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D-~~~~~~~~~A~~~giP~v~~~~~ 137 (481)
. ....+.+.+.|++. ++|++|.= +.-.-...+-+.+...++-++++
T Consensus 74 ----r---~~~d~~~~~~l~~~--~~Dlivlagy~~iL~~~~l~~~~~~~iNiHpS 120 (215)
T 3da8_A 74 ----R---DAWDVAITAATAAH--EPDLVVSAGFMRILGPQFLSRFYGRTLNTHPA 120 (215)
T ss_dssp ----H---HHHHHHHHHHHHTT--CCSEEEEEECCSCCCHHHHHHHTTTEEEEESS
T ss_pred ----h---hhhhHHHHHHHHhh--CCCEEEEcCchhhCCHHHHhhccCCeEEeCcc
Confidence 0 11134567788888 99998853 33333444555666667776664
No 110
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=39.86 E-value=34 Score=29.81 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=25.3
Q ss_pred cCCceeeecCCchhHHHHHcCcceeeccccc
Q 011608 356 SVGGFLSHCGWNSTLESIVNGVPLIVWPLYA 386 (481)
Q Consensus 356 ~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~ 386 (481)
.++++|+.||-....... ..+|+|-++..+
T Consensus 63 ~~dVIISRGgta~~Lr~~-~~iPVV~I~vs~ 92 (225)
T 2pju_A 63 RCDAIIAAGSNGAYLKSR-LSVPVILIKPSG 92 (225)
T ss_dssp CCSEEEEEHHHHHHHHTT-CSSCEEEECCCH
T ss_pred CCeEEEeCChHHHHHHhh-CCCCEEEecCCH
Confidence 356999999999988875 689999999864
No 111
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=39.64 E-value=19 Score=31.55 Aligned_cols=37 Identities=11% Similarity=0.273 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
|.+.+|+|.|+-.+..|- .||+.|+++ ||+|+.+...
T Consensus 2 ~~~~~mkI~IIG~G~~G~-----sLA~~L~~~-G~~V~~~~~~ 38 (232)
T 3dfu_A 2 MQAPRLRVGIFDDGSSTV-----NMAEKLDSV-GHYVTVLHAP 38 (232)
T ss_dssp -CCCCCEEEEECCSCCCS-----CHHHHHHHT-TCEEEECSSG
T ss_pred CCCCCcEEEEEeeCHHHH-----HHHHHHHHC-CCEEEEecCH
Confidence 778889999999998885 589999999 9999887653
No 112
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=39.54 E-value=2.6e+02 Score=27.65 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=24.6
Q ss_pred HHHHHHhhcCCCCcEEEEcCCCchHHHHHHHh-------CCceEEE
Q 011608 96 ALRSSISTLKPRPTALFADLFGTEAFQIADEF-------EMLKYVY 134 (481)
Q Consensus 96 ~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~-------giP~v~~ 134 (481)
.+.+.+++. +||+||.... ...+|+++ |||++.+
T Consensus 429 ~l~~~i~~~--~pDLlig~s~---~k~~a~~~~~~~~~~giP~iri 469 (523)
T 3u7q_B 429 HLRSLVFTD--KPDFMIGNSY---GKFIQRDTLHKGKEFEVPLIRI 469 (523)
T ss_dssp HHHHHHHHT--CCSEEEECTT---HHHHHHHHHHHCGGGCCCEEEC
T ss_pred HHHHHHHhc--CCCEEEECcc---HHHHHHHhhcccccCCCceEEe
Confidence 455667777 9999998853 33466666 9999874
No 113
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=38.59 E-value=1.2e+02 Score=28.10 Aligned_cols=105 Identities=11% Similarity=0.088 Sum_probs=54.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc----hhhhhhccCCCCCCceEEEecCCCCCCCCCCCCc
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDT----STVQSQLRNLPNPHLFNIVSLPPVDISALLDADA 80 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (481)
+|||+|+. --+-...+.++|.+. ||+|..+.+.+.. ..+...... .++.+..... . ...
T Consensus 22 ~mrIvf~G-----~~~fa~~~L~~L~~~-~~~i~~Vvt~pd~~~~~~~v~~~A~~----~gIpv~~~~~-----~-~~~- 84 (329)
T 2bw0_A 22 SMKIAVIG-----QSLFGQEVYCHLRKE-GHEVVGVFTVPDKDGKADPLGLEAEK----DGVPVFKYSR-----W-RAK- 84 (329)
T ss_dssp CCEEEEEC-----CHHHHHHHHHHHHHT-TCEEEEEEECCCCSSCCCHHHHHHHH----HTCCEEECSC-----C-EET-
T ss_pred CCEEEEEc-----CcHHHHHHHHHHHHC-CCeEEEEEeCCCcCCCCCHHHHHHHH----cCCCEEecCc-----c-ccc-
Confidence 38999993 223333567889999 8999888764322 111111000 1333333321 0 000
Q ss_pred cHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCC-chHHHHHHHhCCceEEEechh
Q 011608 81 SIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFG-TEAFQIADEFEMLKYVYIASN 138 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~-~~~~~~A~~~giP~v~~~~~~ 138 (481)
....+.+.+.+++. ++|++|+=.+. .-...+-..+...++-++++.
T Consensus 85 ----------~~~~~~~~~~l~~~--~~Dliv~a~y~~ilp~~il~~~~~g~iNiHpSL 131 (329)
T 2bw0_A 85 ----------GQALPDVVAKYQAL--GAELNVLPFCSQFIPMEIISAPRHGSIIYHPSL 131 (329)
T ss_dssp ----------TEECHHHHHHHHTT--CCSEEEESSCSSCCCHHHHTCSTTCEEEEESSC
T ss_pred ----------ccccHHHHHHHHhc--CCCEEEEeehhhhCCHHHHhhCcCCEEEEcCCc
Confidence 01123455667788 99998855432 223334444555677777653
No 114
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=38.09 E-value=2.3e+02 Score=26.49 Aligned_cols=40 Identities=5% Similarity=-0.026 Sum_probs=32.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
++++-.|+.|=..=.++++..+... |..|.|+.++...+.
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDAEHALDP 103 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEecccccch
Confidence 4555668889999999999999988 899999998865543
No 115
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=37.77 E-value=1.4e+02 Score=25.66 Aligned_cols=104 Identities=8% Similarity=0.082 Sum_probs=57.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCC-CchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCcc
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVAT-DTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADAS 81 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 81 (481)
.++||+++-.+..+. +.+|.+++.+.. +++|..+.+.. .....+.+ .. .++.+..++.....
T Consensus 7 ~~~ri~vl~SG~gsn---l~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A-~~----~gIp~~~~~~~~~~-------- 70 (215)
T 3kcq_A 7 KELRVGVLISGRGSN---LEALAKAFSTEESSVVISCVISNNAEARGLLIA-QS----YGIPTFVVKRKPLD-------- 70 (215)
T ss_dssp CCEEEEEEESSCCHH---HHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHH-HH----TTCCEEECCBTTBC--------
T ss_pred CCCEEEEEEECCcHH---HHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHH-HH----cCCCEEEeCcccCC--------
Confidence 357888877555433 455666665541 37888777742 22221111 11 14445544321110
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCC-CchHHHHHHHhCCceEEEech
Q 011608 82 IVIKIIFMMRESLPALRSSISTLKPRPTALFADLF-GTEAFQIADEFEMLKYVYIAS 137 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~-~~~~~~~A~~~giP~v~~~~~ 137 (481)
.+.+.+.|++. ++|+||.=.+ -.-...+-+.+...++-++++
T Consensus 71 ------------~~~~~~~L~~~--~~Dlivlagy~~IL~~~~l~~~~~~~iNiHpS 113 (215)
T 3kcq_A 71 ------------IEHISTVLREH--DVDLVCLAGFMSILPEKFVTDWHHKIINIHPS 113 (215)
T ss_dssp ------------HHHHHHHHHHT--TCSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred ------------hHHHHHHHHHh--CCCEEEEeCCceEeCHHHHhhccCCeEEECcc
Confidence 05667778888 9999885543 333445566676677777764
No 116
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=37.34 E-value=1.8e+02 Score=24.18 Aligned_cols=144 Identities=12% Similarity=0.118 Sum_probs=77.8
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCcccccc
Q 011608 266 VIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDW 345 (481)
Q Consensus 266 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~ 345 (481)
.|-|-+||. .+-+..++....|+..+.++=..+-+. +..|+.+.+ |
T Consensus 23 ~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~dv~V~Sa---------------------HR~p~~l~~-----------~ 68 (182)
T 1u11_A 23 VVGIIMGSQ--SDWETMRHADALLTELEIPHETLIVSA---------------------HRTPDRLAD-----------Y 68 (182)
T ss_dssp SEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCT---------------------TTCHHHHHH-----------H
T ss_pred EEEEEECcH--HHHHHHHHHHHHHHHcCCCeEEEEEcc---------------------cCCHHHHHH-----------H
Confidence 455666653 456678889999999998876655332 345553322 1
Q ss_pred CchhhhhccccCCceeeecCCc----hhHHHHHcCcceeecccccc--hhhhHHHHHHh--hceeEe-ccccCCCCccCH
Q 011608 346 APQVEILGHASVGGFLSHCGWN----STLESIVNGVPLIVWPLYAE--QKMNATMLAEE--LGVAVR-PNEMPTENLVKR 416 (481)
Q Consensus 346 ~pq~~lL~~~~~~~~I~HgG~~----s~~eal~~GvP~v~~P~~~D--Q~~na~~v~~~--~G~g~~-~~~~~~~~~~~~ 416 (481)
+.+.+ ...+++||.-.|.- ++.-+ ..-+|+|.+|.... +...+-.-.-+ .|+.+. +.+ ++-+-.++
T Consensus 69 ~~~a~---~~g~~ViIa~AG~aa~LpgvvA~-~t~~PVIgVP~~~~~l~G~dsLlSivqmP~GvpVatV~I-~~a~~~nA 143 (182)
T 1u11_A 69 ARTAA---ERGLNVIIAGAGGAAHLPGMCAA-WTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAI-GASGAKNA 143 (182)
T ss_dssp HHHTT---TTTCCEEEEEEESSCCHHHHHHH-HCSSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCS-SHHHHHHH
T ss_pred HHHHH---hCCCcEEEEecCchhhhHHHHHh-ccCCCEEEeeCCCCCCCcHHHHHHHhcCCCCCceEEEec-CCccchHH
Confidence 11110 11133677665543 33333 35799999999642 22222111114 455532 221 00022456
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Q 011608 417 EEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTK 452 (481)
Q Consensus 417 ~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~ 452 (481)
.-++..|. -+.|+. ++++.+.+++..+..+.+
T Consensus 144 allAaqIl-a~~d~~---l~~kL~~~r~~~~~~v~~ 175 (182)
T 1u11_A 144 ALLAASIL-ALYNPA---LAARLETWRALQTASVPN 175 (182)
T ss_dssp HHHHHHHH-GGGCHH---HHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHH-ccCCHH---HHHHHHHHHHHHHHHHHH
Confidence 66665553 445665 888888888886655444
No 117
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=36.86 E-value=1.8e+02 Score=27.20 Aligned_cols=41 Identities=7% Similarity=0.007 Sum_probs=34.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhh
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTV 49 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~ 49 (481)
+++..-|+.|-..=.++++..+..+ |..|.|++.+...+..
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALDPV 117 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCCChhHH
Confidence 5566778999999999999999988 8999999999655443
No 118
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=36.54 E-value=66 Score=23.99 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=24.4
Q ss_pred HHhhcCCCCcEEEEcCCCch--HHHHHHHh-------CCceEEEech
Q 011608 100 SISTLKPRPTALFADLFGTE--AFQIADEF-------EMLKYVYIAS 137 (481)
Q Consensus 100 ~l~~~~~~~D~VI~D~~~~~--~~~~A~~~-------giP~v~~~~~ 137 (481)
.+++. +||+||.|...+. +..+.+++ ++|++.++..
T Consensus 41 ~l~~~--~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~ 85 (122)
T 3gl9_A 41 KLSEF--TPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAK 85 (122)
T ss_dssp HHTTB--CCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESC
T ss_pred HHHhc--CCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecC
Confidence 34445 8999999987654 55555543 5788877653
No 119
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=35.42 E-value=41 Score=28.87 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCCccCHHH-HHHHHHHHHhCCCCeEEEEecCCCc
Q 011608 4 TKTHIALLASPGMGHFIP-VLELGKRFATQNDFQVTIFVVATDT 46 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P-~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (481)
+..||++.-.++ +..+- ...|.+.|.++ |++|.++.++...
T Consensus 4 ~~k~IllgiTGs-iaayk~~~~ll~~L~~~-g~eV~vv~T~~A~ 45 (207)
T 3mcu_A 4 KGKRIGFGFTGS-HCTYEEVMPHLEKLIAE-GAEVRPVVSYTVQ 45 (207)
T ss_dssp TTCEEEEEECSC-GGGGTTSHHHHHHHHHT-TCEEEEEECC---
T ss_pred CCCEEEEEEECh-HHHHHHHHHHHHHHHhC-CCEEEEEEehHHH
Confidence 346888877776 45665 88999999999 9999999999443
No 120
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=35.35 E-value=31 Score=29.56 Aligned_cols=42 Identities=10% Similarity=0.152 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEecCCCch
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFAT-QNDFQVTIFVVATDTS 47 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~-r~Gh~Vt~~~~~~~~~ 47 (481)
.+.||++.-.++.+=+. ...|.++|.+ + |++|.++.++....
T Consensus 18 ~~k~IllgvTGsiaa~k-~~~lv~~L~~~~-g~~V~vv~T~~A~~ 60 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAALK-LPLLVSKLLDIP-GLEVAVVTTERAKH 60 (206)
T ss_dssp SSEEEEEEECSSGGGGT-HHHHHHHHC----CEEEEEEECTGGGG
T ss_pred CCCEEEEEEeChHHHHH-HHHHHHHHhccc-CCEEEEEECHhHHH
Confidence 34688888888877554 5999999999 8 99999999995443
No 121
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=35.27 E-value=68 Score=29.48 Aligned_cols=110 Identities=11% Similarity=0.009 Sum_probs=0.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh-ccCCCCCCceEEEecCCCCCCCCCCCCcc
Q 011608 3 TTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ-LRNLPNPHLFNIVSLPPVDISALLDADAS 81 (481)
Q Consensus 3 ~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 81 (481)
+.+|||+|+-.| .-.....++|.+. ||+|..+.+.+....-+.. +...+......-..||....... .
T Consensus 1 s~~mrIvf~Gt~-----~fa~~~L~~L~~~-~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~-~---- 69 (314)
T 1fmt_A 1 SESLRIIFAGTP-----DFAARHLDALLSS-GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSL-R---- 69 (314)
T ss_dssp CCCCEEEEEECS-----HHHHHHHHHHHHT-TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCS-C----
T ss_pred CCCCEEEEEecC-----HHHHHHHHHHHHC-CCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCCC-C----
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCCcEEE-EcCCCchHHHHHHHhCCceEEEech
Q 011608 82 IVIKIIFMMRESLPALRSSISTLKPRPTALF-ADLFGTEAFQIADEFEMLKYVYIAS 137 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI-~D~~~~~~~~~A~~~giP~v~~~~~ 137 (481)
.+.+.+.|+++ ++|++| +.+.-.-...+-......++-++++
T Consensus 70 ------------~~~~~~~l~~~--~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpS 112 (314)
T 1fmt_A 70 ------------PQENQQLVAEL--QADVMVVVAYGLILPKAVLEMPRLGCINVHGS 112 (314)
T ss_dssp ------------SHHHHHHHHHT--TCSEEEEESCCSCCCHHHHHSSTTCEEEEESS
T ss_pred ------------CHHHHHHHHhc--CCCEEEEeeccccCCHHHHhhccCCEEEEcCC
No 122
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=35.21 E-value=14 Score=19.98 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 011608 463 VAKQCEMSLQGLMAKV 478 (481)
Q Consensus 463 ~~~~~~~~~~~~~~~~ 478 (481)
+++++.+..|.|+.||
T Consensus 2 ~~e~mr~Q~~~lveKv 17 (26)
T 1oeg_A 2 LVEDMQRQWAGLVEKV 17 (26)
T ss_dssp HHHHTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4566777777888776
No 123
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=35.17 E-value=50 Score=28.24 Aligned_cols=47 Identities=9% Similarity=-0.108 Sum_probs=32.9
Q ss_pred hhhhhhccCCCCcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEE
Q 011608 253 SLLEWLDMQPTESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWV 299 (481)
Q Consensus 253 ~~~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 299 (481)
.+.+|+.+...+.++||..+|......+.+..+.+++++++..+.+.
T Consensus 17 ~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~ 63 (206)
T 3l4e_A 17 LFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEEL 63 (206)
T ss_dssp HHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34556544334559999988754444567888999999999876553
No 124
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=34.94 E-value=1.5e+02 Score=25.23 Aligned_cols=108 Identities=8% Similarity=0.077 Sum_probs=56.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCC-CchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccH
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVAT-DTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASI 82 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 82 (481)
++||+++-.+..+. +.+|.+++.+.. .++|..+.+.. .....+.+ .. .++.+..++...+..
T Consensus 7 ~~ri~vl~SG~gsn---l~all~~~~~~~l~~~I~~Visn~~~a~~l~~A-~~----~gIp~~~~~~~~~~~-------- 70 (209)
T 4ds3_A 7 RNRVVIFISGGGSN---MEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKA-EA----AGIATQVFKRKDFAS-------- 70 (209)
T ss_dssp CEEEEEEESSCCHH---HHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHH-HH----TTCCEEECCGGGSSS--------
T ss_pred CccEEEEEECCcHH---HHHHHHHHHcCCCCcEEEEEEECCcccHHHHHH-HH----cCCCEEEeCccccCC--------
Confidence 46787776555433 556666666541 36888777642 22221111 11 145455544211110
Q ss_pred HHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCC-chHHHHHHHhCCceEEEech
Q 011608 83 VIKIIFMMRESLPALRSSISTLKPRPTALFADLFG-TEAFQIADEFEMLKYVYIAS 137 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~-~~~~~~A~~~giP~v~~~~~ 137 (481)
.....+.+.+.|++. ++|+||.=.+. .-...+-+.+...++-++++
T Consensus 71 -------r~~~d~~~~~~l~~~--~~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 117 (209)
T 4ds3_A 71 -------KEAHEDAILAALDVL--KPDIICLAGYMRLLSGRFIAPYEGRILNIHPS 117 (209)
T ss_dssp -------HHHHHHHHHHHHHHH--CCSEEEESSCCSCCCHHHHGGGTTCEEEEESS
T ss_pred -------HHHHHHHHHHHHHhc--CCCEEEEeccccCcCHHHHhhccCCeEEECCc
Confidence 011124667788888 99998855432 33344555565667776654
No 125
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=34.83 E-value=28 Score=27.00 Aligned_cols=35 Identities=9% Similarity=-0.080 Sum_probs=23.3
Q ss_pred HHHhhcCCCCcEEEEcCCCch--HHHHHHH---hCCceEEEe
Q 011608 99 SSISTLKPRPTALFADLFGTE--AFQIADE---FEMLKYVYI 135 (481)
Q Consensus 99 ~~l~~~~~~~D~VI~D~~~~~--~~~~A~~---~giP~v~~~ 135 (481)
+.+++. +||+||.|...+. +..++++ .++|++.++
T Consensus 47 ~~~~~~--~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 47 DIARKG--QFDIAIIDVNLDGEPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp HHHHHC--CSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBC
T ss_pred HHHHhC--CCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEe
Confidence 344555 9999999987765 4455444 578866543
No 126
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=34.78 E-value=1.5e+02 Score=25.28 Aligned_cols=125 Identities=10% Similarity=0.077 Sum_probs=65.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHH-HHhCCCCeEEEEecCCCchhhhhhccCCCC-------CCceEEEecCCCCCCCCCCC
Q 011608 7 HIALLASPGMGHFIPVLELGKR-FATQNDFQVTIFVVATDTSTVQSQLRNLPN-------PHLFNIVSLPPVDISALLDA 78 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~-L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~ 78 (481)
-+++.--|+.|-..=.++++.. +.+. |..|.|++.+...+.+.+.+..... ...+.+......... . ..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~ 108 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG-L-PS 108 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------------
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhh-c-cc
Confidence 3567777999999999998865 4566 7899999999776655444222110 011222221110000 0 00
Q ss_pred CccHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEEcCCCch----------------HHHHHHHhCCceEEEec
Q 011608 79 DASIVIKIIFMMRESLPALRSSISTLKPRPTALFADLFGTE----------------AFQIADEFEMLKYVYIA 136 (481)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D~~~~~----------------~~~~A~~~giP~v~~~~ 136 (481)
..................+...++.. +++.||.|....- -..+|+++|++++.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q 180 (251)
T 2zts_A 109 EEKFVLEDRFNVDNFLRYIYRVVKAI--NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTE 180 (251)
T ss_dssp ---------CCHHHHHHHHHHHHHHT--TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred chhccccccccHHHHHHHHHHHHHhc--CCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 00000000001122234455556666 8999998864321 12478889999888764
No 127
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=33.82 E-value=28 Score=29.55 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=26.7
Q ss_pred cccCCceeeecCCchhHHHHHcCcceeeccccc
Q 011608 354 HASVGGFLSHCGWNSTLESIVNGVPLIVWPLYA 386 (481)
Q Consensus 354 ~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~ 386 (481)
...++++|+.||-....... .++|+|-+|..+
T Consensus 49 ~~~~dVIISRGgta~~lr~~-~~iPVV~I~~s~ 80 (196)
T 2q5c_A 49 QDEVDAIISRGATSDYIKKS-VSIPSISIKVTR 80 (196)
T ss_dssp TTTCSEEEEEHHHHHHHHTT-CSSCEEEECCCH
T ss_pred cCCCeEEEECChHHHHHHHh-CCCCEEEEcCCH
Confidence 45566999999999888875 689999999874
No 128
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=33.52 E-value=2.1e+02 Score=23.76 Aligned_cols=145 Identities=10% Similarity=0.084 Sum_probs=75.2
Q ss_pred cEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccc
Q 011608 265 SVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPD 344 (481)
Q Consensus 265 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~ 344 (481)
|.|-|-+||. .+-+..++..+.|+..+..+-..+-+. ...|+.+.+
T Consensus 23 p~V~IimGS~--SD~~v~~~a~~~L~~~gI~~e~~V~SA---------------------HRtp~~l~~----------- 68 (181)
T 4b4k_A 23 SLVGVIMGST--SDWETMKYACDILDELNIPYEKKVVSA---------------------HRTPDYMFE----------- 68 (181)
T ss_dssp CSEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCT---------------------TTSHHHHHH-----------
T ss_pred ccEEEEECCH--hHHHHHHHHHHHHHHcCCCeeEEEEcc---------------------ccChHHHHH-----------
Confidence 4677778874 456678899999999998876666433 344553322
Q ss_pred cCchhhhhccccCCceeeecCCc----hhHHHHHcCcceeecccccchh---hhHHHHHHhhceeEeccccCCC--CccC
Q 011608 345 WAPQVEILGHASVGGFLSHCGWN----STLESIVNGVPLIVWPLYAEQK---MNATMLAEELGVAVRPNEMPTE--NLVK 415 (481)
Q Consensus 345 ~~pq~~lL~~~~~~~~I~HgG~~----s~~eal~~GvP~v~~P~~~DQ~---~na~~v~~~~G~g~~~~~~~~~--~~~~ 415 (481)
|+-..+ ...++++|.=.|.- ++. |-..-+|+|.+|....-. +.-.-++ +.=-|+-+-....+ ...|
T Consensus 69 ~~~~a~---~~g~~ViIa~AG~aahLpGvv-Aa~T~~PVIGVPv~s~~l~G~DsLlSiv-QMP~GvpVaTvaig~~ga~N 143 (181)
T 4b4k_A 69 YAETAR---ERGLKVIIAGAGGAAHLPGMV-AAKTNLPVIGVPVQSKALNGLDSLLSIV-QMPGGVPVATVAIGKAGSTN 143 (181)
T ss_dssp HHHHTT---TTTCCEEEEEECSSCCHHHHH-HTTCCSCEEEEECCCTTTTTHHHHHHHH-TCCTTCCCEECCSSHHHHHH
T ss_pred HHHHHH---hcCceEEEEeccccccchhhH-HhcCCCCEEEEecCCCCccchhhHHHHH-hCCCCCceEEEecCCccHHH
Confidence 111111 12234566655533 333 334568999999965321 1111222 33223332211000 1123
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Q 011608 416 REEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTK 452 (481)
Q Consensus 416 ~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~ 452 (481)
+.-++..|- .+.|++ ++++.+.+++..++.+.+
T Consensus 144 AallA~qIL-a~~d~~---l~~kl~~~r~~~~~~v~~ 176 (181)
T 4b4k_A 144 AGLLAAQIL-GSFHDD---IHDALELRREAIEKDVRE 176 (181)
T ss_dssp HHHHHHHHH-TTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-ccCCHH---HHHHHHHHHHHHHHHHHH
Confidence 334443332 234555 888888888776555443
No 129
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=33.44 E-value=1.7e+02 Score=28.45 Aligned_cols=147 Identities=14% Similarity=0.016 Sum_probs=75.5
Q ss_pred CcEEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCcccc
Q 011608 264 ESVIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVP 343 (481)
Q Consensus 264 ~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~ 343 (481)
+.++.|..|.. -...++.|.+.+..+.++-.. ..+.+.+.....++.+.
T Consensus 13 ~~vlVvGgG~v-------a~~k~~~L~~~ga~V~vi~~~------------------------~~~~~~~l~~~~~i~~~ 61 (457)
T 1pjq_A 13 RDCLIVGGGDV-------AERKARLLLEAGARLTVNALT------------------------FIPQFTVWANEGMLTLV 61 (457)
T ss_dssp CEEEEECCSHH-------HHHHHHHHHHTTBEEEEEESS------------------------CCHHHHHHHTTTSCEEE
T ss_pred CEEEEECCCHH-------HHHHHHHHHhCcCEEEEEcCC------------------------CCHHHHHHHhcCCEEEE
Confidence 44777777642 234556677778887766421 11233332222233221
Q ss_pred ccCchhhhhccccCCceeeecCCch-----hHHHHHcCcce--eecccccchhhhHHHHH-HhhceeEeccccCCCCc-c
Q 011608 344 DWAPQVEILGHASVGGFLSHCGWNS-----TLESIVNGVPL--IVWPLYAEQKMNATMLA-EELGVAVRPNEMPTENL-V 414 (481)
Q Consensus 344 ~~~pq~~lL~~~~~~~~I~HgG~~s-----~~eal~~GvP~--v~~P~~~DQ~~na~~v~-~~~G~g~~~~~~~~~~~-~ 414 (481)
.---+.+-|...+ ++|.--|.-. ..+|-..|+|+ +--|-..|...-+ .+. ..+-+|+.-+. +. .
T Consensus 62 ~~~~~~~~l~~~~--lVi~at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa-~~~~~~l~iaIsT~G----ksp~ 134 (457)
T 1pjq_A 62 EGPFDETLLDSCW--LAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPS-IIDRSPLMVAVSSGG----TSPV 134 (457)
T ss_dssp ESSCCGGGGTTCS--EEEECCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCE-EEEETTEEEEEECTT----SCHH
T ss_pred ECCCCccccCCcc--EEEEcCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeee-EEEeCCeEEEEECCC----CChH
Confidence 1111223344544 7888777764 34456678886 3333333322211 000 12234555221 22 2
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Q 011608 415 KREEIEMMVRRILVDKEGQALRSRVKELKHSAKKA 449 (481)
Q Consensus 415 ~~~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~ 449 (481)
-...|++.|++.|.. ....+-+.+.+++++++..
T Consensus 135 la~~ir~~ie~~l~~-~~~~~~~~~~~~R~~~~~~ 168 (457)
T 1pjq_A 135 LARLLREKLESLLPQ-HLGQVARYAGQLRARVKKQ 168 (457)
T ss_dssp HHHHHHHHHHHHSCT-THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHhh
Confidence 268889999888854 3234777778888887655
No 130
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=33.38 E-value=2.2e+02 Score=24.14 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=34.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhh
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQS 51 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~ 51 (481)
+++.-.++.|-..=.+.++..+... |..|.|++.+.....+.+
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~~~~~~~~ 68 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEEHPVQVRQ 68 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSSCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHH
Confidence 5666668889888889999999888 899999999876544433
No 131
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=32.95 E-value=20 Score=32.66 Aligned_cols=27 Identities=11% Similarity=-0.040 Sum_probs=23.3
Q ss_pred CCceeeecCCchhHHHHHc----Ccceeecc
Q 011608 357 VGGFLSHCGWNSTLESIVN----GVPLIVWP 383 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~----GvP~v~~P 383 (481)
++++|+=||-||+.+++.. ++|.++++
T Consensus 64 ~D~vi~~GGDGT~l~a~~~~~~~~~P~lGI~ 94 (292)
T 2an1_A 64 ADLAVVVGGDGNMLGAARTLARYDINVIGIN 94 (292)
T ss_dssp CSEEEECSCHHHHHHHHHHHTTSSCEEEEBC
T ss_pred CCEEEEEcCcHHHHHHHHHhhcCCCCEEEEE
Confidence 4499999999999999853 78999887
No 132
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=32.71 E-value=92 Score=24.26 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=32.6
Q ss_pred cCcceeecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCC
Q 011608 375 NGVPLIVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDK 430 (481)
Q Consensus 375 ~GvP~v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~ 430 (481)
..+|.|++--..|..... .. -+.|+--.+. +.++.++|..+|+.++...
T Consensus 74 ~~~pii~ls~~~~~~~~~-~~-~~~g~~~~l~-----kP~~~~~L~~~i~~~~~~~ 122 (155)
T 1qkk_A 74 PDLPMILVTGHGDIPMAV-QA-IQDGAYDFIA-----KPFAADRLVQSARRAEEKR 122 (155)
T ss_dssp TTSCEEEEECGGGHHHHH-HH-HHTTCCEEEE-----SSCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHH-HH-HhcCCCeEEe-----CCCCHHHHHHHHHHHHHHH
Confidence 478888876555433333 32 3567655554 6689999999999998543
No 133
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=32.68 E-value=2.2e+02 Score=27.56 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEE
Q 011608 96 ALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVY 134 (481)
Q Consensus 96 ~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~ 134 (481)
.+.+++++. +||++|.+.. ...+|+++|+|++.+
T Consensus 376 ~l~~~i~~~--~pDl~ig~~~---~~~~a~k~gip~~~~ 409 (458)
T 1mio_B 376 DVHQWIKNE--GVDLLISNTY---GKFIAREENIPFVRF 409 (458)
T ss_dssp HHHHHHHHS--CCSEEEESGG---GHHHHHHHTCCEEEC
T ss_pred HHHHHHHhc--CCCEEEeCcc---hHHHHHHcCCCEEEe
Confidence 456677777 9999998853 467899999999874
No 134
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=32.16 E-value=1.8e+02 Score=22.72 Aligned_cols=112 Identities=12% Similarity=0.112 Sum_probs=58.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhh-hh-hccCCCCCCceEEEecCCCCCCCCCCCCccHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTV-QS-QLRNLPNPHLFNIVSLPPVDISALLDADASIV 83 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (481)
-+++++.-+ .=+.|++.+++.|.++ |.+|+++ .....+.+ -. .++... ..+.+..+...... ...+..
T Consensus 19 ~~~llIaGG--~GiaPl~sm~~~l~~~-~~~v~l~-g~R~~~~~~~~~el~~l~--~~~~~~~~~~~~~~----~~~d~~ 88 (142)
T 3lyu_A 19 GKILAIGAY--TGIVEVYPIAKAWQEI-GNDVTTL-HVTFEPMVILKEELEKAV--TRHIVEPVPLNPNQ----DFLANM 88 (142)
T ss_dssp SEEEEEEET--THHHHHHHHHHHHHHT-TCEEEEE-EEEEGGGCCSHHHHHTTS--SEEEEEEECCCTTS----CHHHHH
T ss_pred CeEEEEECc--CcHHHHHHHHHHHHhc-CCcEEEE-EeCCHHHhhHHHHHHHHH--hheEEEEeeccccc----CCCCCC
Confidence 467777744 3489999999999999 8999998 54332221 11 144433 23333322211000 001111
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCc-EEEEcCCCc--hHHHHHHHhCCceE
Q 011608 84 IKIIFMMRESLPALRSSISTLKPRPT-ALFADLFGT--EAFQIADEFEMLKY 132 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~D-~VI~D~~~~--~~~~~A~~~giP~v 132 (481)
.....+. .+.+.+.+... +.| +.++-+-.. .....++++|||..
T Consensus 89 ~g~~G~v---~~~l~~~~~~~--~~~~vy~CGP~~Mm~av~~~l~~~~~~~~ 135 (142)
T 3lyu_A 89 KNVSQRL---KEKVRELLESE--DWDLVFMVGPVGDQKQVFEVVKEYGVPML 135 (142)
T ss_dssp HHHHHHH---HHHHHHHHHSS--CCSEEEEESCHHHHHHHHHHHHHHTCCBC
T ss_pred CCCccch---hHHHHHhcccC--CCCEEEEECCHHHHHHHHHHHHHcCCchh
Confidence 1111111 12344455543 555 556776433 23467889999864
No 135
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=32.12 E-value=2.1e+02 Score=23.52 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=74.9
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCcccccc
Q 011608 266 VIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDW 345 (481)
Q Consensus 266 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~ 345 (481)
.|-|-+||. .+-+..++....|+..+.++=..+-+. +..|+.+. .|
T Consensus 9 ~V~IimgS~--SD~~v~~~a~~~L~~~gi~~ev~V~Sa---------------------HR~p~~~~-----------~~ 54 (174)
T 3lp6_A 9 RVGVIMGSD--SDWPVMADAAAALAEFDIPAEVRVVSA---------------------HRTPEAMF-----------SY 54 (174)
T ss_dssp SEEEEESCG--GGHHHHHHHHHHHHHTTCCEEEEECCT---------------------TTCHHHHH-----------HH
T ss_pred eEEEEECcH--HhHHHHHHHHHHHHHcCCCEEEEEECC---------------------CCCHHHHH-----------HH
Confidence 355556653 456678889999999998876655332 34555332 22
Q ss_pred CchhhhhccccCCceeeecCCchhHHH---HHcCcceeecccccchh-hhHHHHH-Hh--hceeEec-cccCCCCccCHH
Q 011608 346 APQVEILGHASVGGFLSHCGWNSTLES---IVNGVPLIVWPLYAEQK-MNATMLA-EE--LGVAVRP-NEMPTENLVKRE 417 (481)
Q Consensus 346 ~pq~~lL~~~~~~~~I~HgG~~s~~ea---l~~GvP~v~~P~~~DQ~-~na~~v~-~~--~G~g~~~-~~~~~~~~~~~~ 417 (481)
+-..+ ...+++||.=.|.-.-.-. -..-+|+|.+|...-.. .....+. -+ .|+.+.. .+ +...++.
T Consensus 55 ~~~a~---~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~daLlS~vqmp~GvpVatV~I---~~~~nAa 128 (174)
T 3lp6_A 55 ARGAA---ARGLEVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSI---GGAGNAG 128 (174)
T ss_dssp HHHHH---HHTCCEEEEEEESSCCHHHHHHHHCSSCEEEEEECCSSGGGHHHHHHHHCCCTTCCCEECCT---TCHHHHH
T ss_pred HHHHH---hCCCCEEEEecCchhhhHHHHHhccCCCEEEeeCCCCCCCCHHHHHHHhhCCCCCeeEEEEc---CcchHHH
Confidence 11111 1223467776664322222 23568999999863211 1111220 12 2432221 11 2445666
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Q 011608 418 EIEMMVRRILVDKEGQALRSRVKELKHSAKKA 449 (481)
Q Consensus 418 ~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~ 449 (481)
-++..|. -+.|+. ++++.+.++++.+..
T Consensus 129 ~lAa~Il-~~~d~~---l~~kl~~~r~~~~~~ 156 (174)
T 3lp6_A 129 LLAVRML-GAANPQ---LRARIVAFQDRLADV 156 (174)
T ss_dssp HHHHHHH-HTTCHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCHH---HHHHHHHHHHHHHHH
Confidence 6666553 344665 888888888775544
No 136
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=31.67 E-value=41 Score=27.24 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=28.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
-+++++.-+ .| +.|++.+++.|.++ |.+|+++ ...
T Consensus 24 ~~~llIaGG-~G-ItPl~sm~~~l~~~-~~~v~l~-g~r 58 (158)
T 3lrx_A 24 GKILAIGAY-TG-IVEVYPIAKAWQEI-GNDVTTL-HVT 58 (158)
T ss_dssp SEEEEEEET-TH-HHHHHHHHHHHHHH-TCEEEEE-EEC
T ss_pred CeEEEEEcc-Cc-HHHHHHHHHHHHhc-CCcEEEE-EeC
Confidence 467777744 34 99999999999998 8899999 553
No 137
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=31.13 E-value=21 Score=32.85 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=24.0
Q ss_pred CCceeeecCCchhHHHHHc----Ccceeeccc
Q 011608 357 VGGFLSHCGWNSTLESIVN----GVPLIVWPL 384 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~~----GvP~v~~P~ 384 (481)
++++|+-||-||+.+++.. ++|.++++.
T Consensus 76 ~d~vi~~GGDGT~l~a~~~~~~~~~pvlgi~~ 107 (307)
T 1u0t_A 76 CELVLVLGGDGTFLRAAELARNASIPVLGVNL 107 (307)
T ss_dssp CCCEEEEECHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHhccCCCCEEEEeC
Confidence 4499999999999999865 889998874
No 138
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=30.77 E-value=51 Score=28.00 Aligned_cols=41 Identities=5% Similarity=0.054 Sum_probs=32.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCch
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTS 47 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (481)
|||++--.++.|-+. ...|.+.|.++.|++|.++.++....
T Consensus 1 ~~IllgvTGsiaa~k-~~~ll~~L~~~~g~~V~vv~T~~A~~ 41 (197)
T 1sbz_A 1 MKLIVGMTGATGAPL-GVALLQALREMPNVETHLVMSKWAKT 41 (197)
T ss_dssp CEEEEEECSSSCHHH-HHHHHHHHHTCTTCEEEEEECHHHHH
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHhccCCEEEEEECchHHH
Confidence 578888878877766 89999999876369999999884433
No 139
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=30.61 E-value=89 Score=27.28 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=30.7
Q ss_pred hHHHHHHHhhcCCCCcEEEEcCCCc-------hHHHHHHHhCCceEEEe
Q 011608 94 LPALRSSISTLKPRPTALFADLFGT-------EAFQIADEFEMLKYVYI 135 (481)
Q Consensus 94 ~~~~~~~l~~~~~~~D~VI~D~~~~-------~~~~~A~~~giP~v~~~ 135 (481)
.+.+.+.++++..+||+|++|-... -+..+.-.+++|+|.+.
T Consensus 94 ~P~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVA 142 (237)
T 3goc_A 94 IPTVLAALDALPCPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVA 142 (237)
T ss_dssp HHHHHHHHHTSSSCCSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEEE
T ss_pred HHHHHHHHHhcCCCCCEEEEeCceeecCCCcchhheeeeecCCCEEeee
Confidence 4667777787777899999994332 24467777889998865
No 140
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=30.51 E-value=38 Score=27.17 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=30.8
Q ss_pred CcEEEEEcC-C-CccCHHHHHHHHHHHHhCCCCeEEEEecCCCch
Q 011608 5 KTHIALLAS-P-GMGHFIPVLELGKRFATQNDFQVTIFVVATDTS 47 (481)
Q Consensus 5 ~~~vvl~~~-p-~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (481)
.|+++++-- | .--.+.-++-++..|+++ ||+|++++++....
T Consensus 6 ~m~~LilLGCPE~Pvq~p~~lYl~~~Lk~~-G~~v~VA~npAAlk 49 (157)
T 1kjn_A 6 TGKALMVLGCPESPVQIPLAIYTSHKLKKK-GFRVTVTANPAALR 49 (157)
T ss_dssp CCEEEEECCCSCSTTHHHHHHHHHHHHHHT-TCEEEEEECHHHHH
T ss_pred ceeeeEEecCCCCcchhhHHHHHHHHHHhc-CCeeEEecCHHHHh
Confidence 466655532 2 335667789999999999 99999999994433
No 141
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=29.98 E-value=88 Score=27.12 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=31.5
Q ss_pred hHHHHHHHhhcCCCCcEEEEcCCCch-------HHHHHHHhCCceEEEec
Q 011608 94 LPALRSSISTLKPRPTALFADLFGTE-------AFQIADEFEMLKYVYIA 136 (481)
Q Consensus 94 ~~~~~~~l~~~~~~~D~VI~D~~~~~-------~~~~A~~~giP~v~~~~ 136 (481)
.+.+.+.++++..+||+|++|-.... +..+.-.+++|+|.+.=
T Consensus 90 ~P~~l~al~~L~~~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVAK 139 (225)
T 2w36_A 90 GPLFLKAWEKLRTKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAK 139 (225)
T ss_dssp HHHHHHHHTTCCSCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEES
T ss_pred hHHHHHHHHhcCCCCCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEEe
Confidence 45677778888778999999954443 34566777999998653
No 142
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=29.94 E-value=39 Score=29.78 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=33.5
Q ss_pred CCCCCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEecCCC
Q 011608 1 MQTTKTHIALLAS--PGMGHFIPVLELGKRFATQNDFQVTIFVVATD 45 (481)
Q Consensus 1 m~~~~~~vvl~~~--p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~ 45 (481)
|...+++++.+.. ++.|-..-...||..|+++ |++|.++=..+.
T Consensus 1 m~~~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 46 (257)
T 1wcv_1 1 MLRAKVRRIALANQKGGVGKTTTAINLAAYLARL-GKRVLLVDLDPQ 46 (257)
T ss_dssp ----CCCEEEECCSSCCHHHHHHHHHHHHHHHHT-TCCEEEEECCTT
T ss_pred CCCCCCEEEEEEeCCCCchHHHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence 6677788777753 6778999999999999999 999999876654
No 143
>3zqe_A Protein PRGI, cell invasion protein SIPD; cell invasion complex, type III secretion, T3 complex, HOST pathogen interaction; HET: DXC; 2.19A {Salmonella enterica subsp} PDB: 3zqb_A* 2kv7_A 2x9c_A 2lpz_A 2jow_A
Probab=29.89 E-value=58 Score=29.44 Aligned_cols=57 Identities=5% Similarity=0.084 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCChHHHHH-HHHHHHHHHHHHHHHhhhcC
Q 011608 417 EEIEMMVRRILVDKEGQALRSRVKELKHSAKKASTKGGSSYNALS-QVAKQCEMSLQGLMAKVMGA 481 (481)
Q Consensus 417 ~~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 481 (481)
+++.+||..+-.+++ =-....++++.+... +...++. .+++.++...|+|+.||-|+
T Consensus 28 ~~v~~ai~~l~~~~~---np~~l~~~Q~~~~~~-----s~~~n~~s~~~k~~kd~~~~Iiqki~~~ 85 (305)
T 3zqe_A 28 TQVTEALDKLAAKPS---DPALLAAYQSKLSEY-----NLYRNAQSNTVKVFKDIDAAIIQNFRGG 85 (305)
T ss_dssp HHHHHHHHHHHHSTT---CHHHHHHHHHHHHHH-----HHHHHHHHTHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHhcCCC---CHHHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 566677766655544 234455566665443 2333333 46677888899999999875
No 144
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=29.82 E-value=1.7e+02 Score=25.12 Aligned_cols=103 Identities=13% Similarity=0.073 Sum_probs=65.7
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCcee
Q 011608 282 MIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFL 361 (481)
Q Consensus 282 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I 361 (481)
-.++.+.++..+..+++..+.. .-+|+.+.+..+..-+-+ |++ +.=
T Consensus 78 d~~~~~~l~~~~~Dlivlagy~---------------------~iL~~~~l~~~~~~~iNi-----------HpS--LLP 123 (215)
T 3da8_A 78 DVAITAATAAHEPDLVVSAGFM---------------------RILGPQFLSRFYGRTLNT-----------HPA--LLP 123 (215)
T ss_dssp HHHHHHHHHTTCCSEEEEEECC---------------------SCCCHHHHHHHTTTEEEE-----------ESS--CTT
T ss_pred hHHHHHHHHhhCCCEEEEcCch---------------------hhCCHHHHhhccCCeEEe-----------Ccc--ccc
Confidence 4568888999888988887432 457787777655321111 444 333
Q ss_pred eecCCchhHHHHHcCcceeecccc--cchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHH
Q 011608 362 SHCGWNSTLESIVNGVPLIVWPLY--AEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRI 426 (481)
Q Consensus 362 ~HgG~~s~~eal~~GvP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~v 426 (481)
..-|...+..|+.+|....++-.+ .+..+-+.-+. + .-+.+. ..-|.++|.+.+.++
T Consensus 124 ~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~lD~G~Ii~-Q--~~v~I~-----~~dt~~~L~~rl~~~ 182 (215)
T 3da8_A 124 AFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILA-Q--QPVPVL-----DGDDEETLHERIKVT 182 (215)
T ss_dssp SSCSTTHHHHHHHHTCSEEEEEEEECCSSSSCSCEEE-E--EEEECC-----TTCCHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHcCCCeEEEEEEEEcCCCCCCCEEE-E--EEeecC-----CCCCHHHHHHHHHHH
Confidence 446899999999999999888775 24444444332 2 223333 445788888777543
No 145
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=29.69 E-value=3.3e+02 Score=28.78 Aligned_cols=83 Identities=10% Similarity=0.055 Sum_probs=47.9
Q ss_pred ceeeecCCchhHHHHHcC-c--ce--eecccccchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCchH
Q 011608 359 GFLSHCGWNSTLESIVNG-V--PL--IVWPLYAEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKEGQ 433 (481)
Q Consensus 359 ~~I~HgG~~s~~eal~~G-v--P~--v~~P~~~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~~~ 433 (481)
+|+.||--+.+.|.++-. . |+ +++|-++.--.-...+. . ..++++.|.+++.+++....+.
T Consensus 726 i~~~gGlgsaV~ell~~r~~~~~l~v~G~~d~G~tgtp~eLl~-~-------------~gld~~~Iv~~a~~~l~~~~~~ 791 (845)
T 3ahc_A 726 LFAYHSYAQDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFDMVR-V-------------NDMDRYALQAAALKLIDADKYA 791 (845)
T ss_dssp EEEESSCHHHHHHHTTTSTTGGGEEEECCCSCCCSCCHHHHHH-T-------------TTCSHHHHHHHHHHHHHTTTTH
T ss_pred eeeecCcHHHHHHHHHhCCCCceEEEEeccCCCCCCCHHHHHH-H-------------hCcCHHHHHHHHHHHcchhhHH
Confidence 445666666667766654 2 33 33443332112222221 1 5578999999998888755566
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC
Q 011608 434 ALRSRVKELKHSAKKASTKGGS 455 (481)
Q Consensus 434 ~~r~~a~~l~~~~~~~~~~~g~ 455 (481)
.+++.++....+.+.++.+.|-
T Consensus 792 ~~~~~~~~~~~~~~~~~~~~g~ 813 (845)
T 3ahc_A 792 DKIDELNAFRKKAFQFAVDNGY 813 (845)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 6777777766666555544443
No 146
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=29.11 E-value=1.7e+02 Score=24.80 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCch
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTS 47 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 47 (481)
|..+++++.+++. +..|.-..--..|.++ |++|.=+++...+.
T Consensus 21 mp~~~Lr~avVCa---SN~NRSMEAH~~L~k~-Gf~V~SfGTGs~Vk 63 (214)
T 4h3k_B 21 MPSSPLRVAVVSS---SNQNRSMEAHNILSKR-GFSVRSFGTGTHVK 63 (214)
T ss_dssp -----CEEEEEES---SSSSHHHHHHHHHHHT-TCEEEEEECSSSEE
T ss_pred CCCCCCeEEEECC---CCcchhHHHHHHHHHC-CCceEeecCCCccC
Confidence 5566788999885 5677888888889999 99999888884443
No 147
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=28.94 E-value=43 Score=26.65 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=25.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
.||+++-+ |++- ..+++.|.++ ||+|+++...
T Consensus 4 ~~vlI~G~---G~vG--~~la~~L~~~-g~~V~vid~~ 35 (153)
T 1id1_A 4 DHFIVCGH---SILA--INTILQLNQR-GQNVTVISNL 35 (153)
T ss_dssp SCEEEECC---SHHH--HHHHHHHHHT-TCCEEEEECC
T ss_pred CcEEEECC---CHHH--HHHHHHHHHC-CCCEEEEECC
Confidence 47888854 4433 7899999999 9999999874
No 148
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=28.75 E-value=2.7e+02 Score=24.86 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=31.2
Q ss_pred hHHHHHHHhhcCCCCcEEEEcCCCchH--HHHHHHhCCceEEEec
Q 011608 94 LPALRSSISTLKPRPTALFADLFGTEA--FQIADEFEMLKYVYIA 136 (481)
Q Consensus 94 ~~~~~~~l~~~~~~~D~VI~D~~~~~~--~~~A~~~giP~v~~~~ 136 (481)
...+.+.+++- +..+|+++..+... -.+|+..|++++.+.+
T Consensus 217 l~~l~~~ik~~--~v~~if~e~~~~~~~~~~la~~~g~~v~~l~p 259 (286)
T 3gi1_A 217 LKEIQDFVKEY--NVKTIFAEDNVNPKIAHAIAKSTGAKVKTLSP 259 (286)
T ss_dssp HHHHHHHHHHT--TCCEEEECTTSCTHHHHHHHHTTTCEEEECCC
T ss_pred HHHHHHHHHHc--CCCEEEEeCCCChHHHHHHHHHhCCeEEEecc
Confidence 44556667776 99999999877764 3689999999987543
No 149
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=28.70 E-value=53 Score=31.85 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=35.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEecCCCchhhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFAT-QNDFQVTIFVVATDTSTVQS 51 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~-r~Gh~Vt~~~~~~~~~~~~~ 51 (481)
-+++..-|+.|-..=.+.+|..... . |..|.|++.+.....+..
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~~~~~l~~ 246 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEMPAAQLTL 246 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSSCHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHH
Confidence 3667777999999999999999875 5 889999999966554443
No 150
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=28.51 E-value=1.4e+02 Score=25.44 Aligned_cols=102 Identities=17% Similarity=0.084 Sum_probs=63.7
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCcee
Q 011608 282 MIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFL 361 (481)
Q Consensus 282 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I 361 (481)
-.++.+.++..+..++++.+.. .-+|+.+.+..+..-+- =|++ +.=
T Consensus 75 d~~~~~~l~~~~~Dliv~agy~---------------------~il~~~~l~~~~~~~iN-----------iHpS--LLP 120 (209)
T 4ds3_A 75 EDAILAALDVLKPDIICLAGYM---------------------RLLSGRFIAPYEGRILN-----------IHPS--LLP 120 (209)
T ss_dssp HHHHHHHHHHHCCSEEEESSCC---------------------SCCCHHHHGGGTTCEEE-----------EESS--CTT
T ss_pred HHHHHHHHHhcCCCEEEEeccc---------------------cCcCHHHHhhccCCeEE-----------ECCc--ccc
Confidence 3568888888888988887432 45777776655432111 1555 444
Q ss_pred eecCCchhHHHHHcCcceeeccccc--chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHH
Q 011608 362 SHCGWNSTLESIVNGVPLIVWPLYA--EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRR 425 (481)
Q Consensus 362 ~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~ 425 (481)
...|...+..|+.+|....++-++. +..+-+.-+. + .-+.+. ..-|.++|.+.+.+
T Consensus 121 ~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~-Q--~~v~I~-----~~dt~~~L~~r~~~ 178 (209)
T 4ds3_A 121 LFPGLHTHQRALDAGMKLAGCTVHLVTEGMDEGPILA-Q--AAVPVL-----DGDTAETLAARVLK 178 (209)
T ss_dssp SSCSSCHHHHHHHTTCSEEEEEEEECCC--CCCCEEE-E--EEEECC-----TTCCHHHHHHHHHH
T ss_pred CCCChhHHHHHHHcCCCeEEEEEEEEcCCCCCCCeEE-E--EEEecC-----CCCCHHHHHHHHHH
Confidence 5568999999999999988887752 3444443332 2 223333 34577888777654
No 151
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=28.37 E-value=1e+02 Score=23.45 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCcEEEEcCCCch--HHHHHHHh-------CCceEEEechh
Q 011608 95 PALRSSISTLKPRPTALFADLFGTE--AFQIADEF-------EMLKYVYIASN 138 (481)
Q Consensus 95 ~~~~~~l~~~~~~~D~VI~D~~~~~--~~~~A~~~-------giP~v~~~~~~ 138 (481)
....+.+.+. +||+||.|..... +..+++++ ++|++.++...
T Consensus 38 ~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 38 EEALQQIYKN--LPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred HHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCC
No 152
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=28.11 E-value=1.7e+02 Score=25.38 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=65.5
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCcee
Q 011608 282 MIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFL 361 (481)
Q Consensus 282 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I 361 (481)
-.++.+.++..+..++++.+.. .-+|+.+.+..+...+-+ |++ +.=
T Consensus 90 ~~~~~~~l~~~~~Dliv~agy~---------------------~IL~~~~l~~~~~~~iNi-----------HpS--LLP 135 (229)
T 3auf_A 90 DAALAERLQAYGVDLVCLAGYM---------------------RLVRGPMLTAFPNRILNI-----------HPS--LLP 135 (229)
T ss_dssp HHHHHHHHHHTTCSEEEESSCC---------------------SCCCHHHHHHSTTCEEEE-----------ESS--CTT
T ss_pred cHHHHHHHHhcCCCEEEEcChh---------------------HhCCHHHHhhccCCEEEE-----------ccC--cCc
Confidence 3567888888888988887432 457777776554321211 444 333
Q ss_pred eecCCchhHHHHHcCcceeecccc--cchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHH
Q 011608 362 SHCGWNSTLESIVNGVPLIVWPLY--AEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRI 426 (481)
Q Consensus 362 ~HgG~~s~~eal~~GvP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~v 426 (481)
...|...+..|+.+|....++-++ .+..+.+.-+. + .-+.+. ..-|.++|.+.+.++
T Consensus 136 ~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~-Q--~~v~I~-----~~dt~~~L~~rl~~~ 194 (229)
T 3auf_A 136 AFPGLEAQRQALEHGVKVAGCTVHFVTAGVDEGPIIL-Q--AAVPVL-----EGDTVEDLRRRILAE 194 (229)
T ss_dssp SSCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEE-E--EEEECC-----TTCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHcCCCeEEEEEEEECCCCcCCCEEE-E--EEEecC-----CCCCHHHHHHHHHHH
Confidence 346999999999999999888775 34555554442 2 223333 445788888777543
No 153
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=27.94 E-value=3e+02 Score=25.53 Aligned_cols=41 Identities=5% Similarity=0.015 Sum_probs=34.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
-+++.--|+.|-..=.++++..+..+ |..|.|+..+...+.
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~E~s~~~ 105 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDP 105 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCccH
Confidence 35667778999999999999999999 999999999865443
No 154
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.83 E-value=60 Score=22.66 Aligned_cols=50 Identities=30% Similarity=0.291 Sum_probs=32.8
Q ss_pred HcCcceeecccccchhhhHHHH--HHhhceeEeccccCCCCccCHHHHHHHHHHHhc
Q 011608 374 VNGVPLIVWPLYAEQKMNATML--AEELGVAVRPNEMPTENLVKREEIEMMVRRILV 428 (481)
Q Consensus 374 ~~GvP~v~~P~~~DQ~~na~~v--~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~ 428 (481)
-.|+|+++.--...|.+....- +++-|+...+- +..+++++.+.+++.|.
T Consensus 49 dngkplvvfvngasqndvnefqneakkegvsydvl-----kstdpeeltqrvreflk 100 (112)
T 2lnd_A 49 DNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVL-----KSTDPEELTQRVREFLK 100 (112)
T ss_dssp TCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEE-----ECCCHHHHHHHHHHHHH
T ss_pred hcCCeEEEEecCcccccHHHHHHHHHhcCcchhhh-----ccCCHHHHHHHHHHHHH
Confidence 4789998877666665433222 13446655443 56789999999988874
No 155
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=27.81 E-value=2.5e+02 Score=22.98 Aligned_cols=142 Identities=13% Similarity=0.155 Sum_probs=74.9
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCcccccc
Q 011608 266 VIYVSFGGGGTLSANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDW 345 (481)
Q Consensus 266 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~ 345 (481)
.|-|-+||. .+-+..+++...|+..+.++-..+-+. +..|+.+. .|
T Consensus 8 ~V~IimgS~--SD~~v~~~a~~~l~~~gi~~ev~V~Sa---------------------HR~p~~~~-----------~~ 53 (169)
T 3trh_A 8 FVAILMGSD--SDLSTMETAFTELKSLGIPFEAHILSA---------------------HRTPKETV-----------EF 53 (169)
T ss_dssp EEEEEESCG--GGHHHHHHHHHHHHHTTCCEEEEECCT---------------------TTSHHHHH-----------HH
T ss_pred cEEEEECcH--HhHHHHHHHHHHHHHcCCCEEEEEEcc---------------------cCCHHHHH-----------HH
Confidence 466667763 456678889999999998876665332 34555332 22
Q ss_pred CchhhhhccccCCceeeecCCchhHHHH---HcCcceeeccccc-chhhhHHHHH-Hh--hceeEe-ccccCCCCccCHH
Q 011608 346 APQVEILGHASVGGFLSHCGWNSTLESI---VNGVPLIVWPLYA-EQKMNATMLA-EE--LGVAVR-PNEMPTENLVKRE 417 (481)
Q Consensus 346 ~pq~~lL~~~~~~~~I~HgG~~s~~eal---~~GvP~v~~P~~~-DQ~~na~~v~-~~--~G~g~~-~~~~~~~~~~~~~ 417 (481)
+...+ ...+++||.=.|.-.-.-.+ ..-+|+|.+|... +-......+. -+ .|+.+. +.+ ++...+++.
T Consensus 54 ~~~a~---~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmp~GvPVatV~I-~~a~~~nAa 129 (169)
T 3trh_A 54 VENAD---NRGCAVFIAAAGLAAHLAGTIAAHTLKPVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAI-GKAGAKNAA 129 (169)
T ss_dssp HHHHH---HTTEEEEEEEECSSCCHHHHHHHTCSSCEEEEECCCSTTTTHHHHHHHHCCCTTSCCEECCS-THHHHHHHH
T ss_pred HHHHH---hCCCcEEEEECChhhhhHHHHHhcCCCCEEEeecCCCCCCCHHHHHHhhcCCCCCceEEEec-CCccchHHH
Confidence 21111 11233677776654333332 3468999999864 2212222331 12 344322 121 000223555
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Q 011608 418 EIEMMVRRILVDKEGQALRSRVKELKHSAKKA 449 (481)
Q Consensus 418 ~l~~al~~vl~~~~~~~~r~~a~~l~~~~~~~ 449 (481)
-++..|. -+.|+. ++++.+.++++.+..
T Consensus 130 ~lAa~Il-~~~d~~---l~~kl~~~r~~~~~~ 157 (169)
T 3trh_A 130 ILAAQII-ALQDKS---IAQKLVQQRTAKRET 157 (169)
T ss_dssp HHHHHHH-HTTCHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHH---HHHHHHHHHHHHHHH
Confidence 5554442 345665 888888888775543
No 156
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=27.78 E-value=2e+02 Score=24.44 Aligned_cols=102 Identities=17% Similarity=0.087 Sum_probs=62.4
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceee
Q 011608 283 IEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLS 362 (481)
Q Consensus 283 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~ 362 (481)
.++.+.++..+..++++.+.. .-+|+.+.+..+...+-+ |++ +.=.
T Consensus 69 ~~~~~~l~~~~~Dliv~a~y~---------------------~il~~~~l~~~~~~~iNi-----------HpS--LLP~ 114 (209)
T 1meo_A 69 SAIDLVLEEFSIDIVCLAGFM---------------------RILSGPFVQKWNGKMLNI-----------HPS--LLPS 114 (209)
T ss_dssp HHHHHHHHHTTCCEEEEESCC---------------------SCCCHHHHHHTTTSEEEE-----------ESS--STTS
T ss_pred HHHHHHHHhcCCCEEEEcchh---------------------hhCCHHHHhhhcCCEEEE-----------ccC--cCcC
Confidence 567888888888888887432 456777766554321212 444 3334
Q ss_pred ecCCchhHHHHHcCcceeecccc--cchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHH
Q 011608 363 HCGWNSTLESIVNGVPLIVWPLY--AEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRI 426 (481)
Q Consensus 363 HgG~~s~~eal~~GvP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~v 426 (481)
..|...+..|+.+|....++-++ .+..+.+.-+. + .-+.+. ..-|.++|.+.+.++
T Consensus 115 yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~-Q--~~v~I~-----~~dt~~~L~~rl~~~ 172 (209)
T 1meo_A 115 FKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIIL-Q--EAVPVK-----RGDTVATLSERVKLA 172 (209)
T ss_dssp SCSSCHHHHHHHHTCSEEEEEEEECCC---CCCEEE-E--EEEECC-----TTCCHHHHHHHHHHH
T ss_pred CCCccHHHHHHHcCCCcEEEEEEEECCCCcCCCEEE-E--EEEecC-----CCCCHHHHHHHHHHH
Confidence 56889999999999998888765 34444444432 2 223333 345788887776543
No 157
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=27.45 E-value=1.7e+02 Score=24.93 Aligned_cols=102 Identities=15% Similarity=0.030 Sum_probs=65.0
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCcee
Q 011608 282 MIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFL 361 (481)
Q Consensus 282 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I 361 (481)
-.++.+.++..+..+++..+.. .-+|+.+.+..+...+-+ |++ +.=
T Consensus 71 ~~~~~~~l~~~~~Dliv~a~y~---------------------~il~~~~l~~~~~~~iNi-----------HpS--LLP 116 (212)
T 3av3_A 71 ESEILRELKGRQIDWIALAGYM---------------------RLIGPTLLSAYEGKIVNI-----------HPS--LLP 116 (212)
T ss_dssp HHHHHHHHHHTTCCEEEESSCC---------------------SCCCHHHHHHTTTCEEEE-----------ESS--CTT
T ss_pred HHHHHHHHHhcCCCEEEEchhh---------------------hhCCHHHHhhhcCCEEEE-----------ecC--cCC
Confidence 3468888888888888887422 457777776554321212 444 444
Q ss_pred eecCCchhHHHHHcCcceeecccc--cchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHH
Q 011608 362 SHCGWNSTLESIVNGVPLIVWPLY--AEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRR 425 (481)
Q Consensus 362 ~HgG~~s~~eal~~GvP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~ 425 (481)
...|...+..|+.+|....++-.+ .+..+.+.-+. + .-+.+. ..-|.++|.+.+.+
T Consensus 117 ~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~-Q--~~v~I~-----~~dt~~~L~~r~~~ 174 (212)
T 3av3_A 117 AFPGKDAIGQAYRAGVSETGVTVHYVDEGMDTGPVIA-Q--RVVPIV-----PGEPIEALEERIHQ 174 (212)
T ss_dssp SSCSTTHHHHHHHHTCSEEEEEEEECCSSSSCSCEEE-E--EEEECC-----TTCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHcCCCeEEEEEEEECCCCCCCCEEE-E--EEEecC-----CCCCHHHHHHHHHH
Confidence 457899999999999998888775 34444444432 2 223333 44578888777654
No 158
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=27.25 E-value=1.1e+02 Score=22.43 Aligned_cols=36 Identities=17% Similarity=0.397 Sum_probs=23.6
Q ss_pred HHhhcCCCCcEEEEcCCCch--HHHHHHH----hCCceEEEech
Q 011608 100 SISTLKPRPTALFADLFGTE--AFQIADE----FEMLKYVYIAS 137 (481)
Q Consensus 100 ~l~~~~~~~D~VI~D~~~~~--~~~~A~~----~giP~v~~~~~ 137 (481)
.+++. +||+||.|...+. +..+.++ .++|++.++..
T Consensus 41 ~~~~~--~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~ 82 (120)
T 3f6p_A 41 MVEEL--QPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAK 82 (120)
T ss_dssp HHHTT--CCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEES
T ss_pred HHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECC
Confidence 34444 8999999987664 4444443 36888776653
No 159
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=27.24 E-value=78 Score=26.60 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=33.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
.||++.-.++.|-+ =...+.++|.++ |++|.++.++.....
T Consensus 2 k~IllgvTGs~aa~-k~~~l~~~L~~~-g~~V~vv~T~~A~~~ 42 (189)
T 2ejb_A 2 QKIALCITGASGVI-YGIKLLQVLEEL-DFSVDLVISRNAKVV 42 (189)
T ss_dssp CEEEEEECSSTTHH-HHHHHHHHHHHT-TCEEEEEECHHHHHH
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHHC-CCEEEEEEChhHHHH
Confidence 37888888888855 578999999999 999999999854443
No 160
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=26.70 E-value=1.9e+02 Score=24.69 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=64.7
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCcee
Q 011608 282 MIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFL 361 (481)
Q Consensus 282 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I 361 (481)
-.++.+.++..+..++++.+.. .-+|+.+.+..+...+-+ |++ +.=
T Consensus 70 d~~~~~~l~~~~~Dliv~agy~---------------------~Il~~~~l~~~~~~~iNi-----------HpS--LLP 115 (211)
T 3p9x_A 70 EIEVVQQLKEKQIDFVVLAGYM---------------------RLVGPTLLGAYEGRIVNI-----------HPS--LLP 115 (211)
T ss_dssp HHHHHHHHHHTTCCEEEESSCC---------------------SCCCHHHHHHHTTSEEEE-----------ESS--CTT
T ss_pred HHHHHHHHHhcCCCEEEEeCch---------------------hhcCHHHHhhccCCeEEE-----------CCc--cCC
Confidence 4568888999999988887432 457787776655321212 444 333
Q ss_pred eecCCchhHHHHHcCcceeecccc--cchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHH
Q 011608 362 SHCGWNSTLESIVNGVPLIVWPLY--AEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRR 425 (481)
Q Consensus 362 ~HgG~~s~~eal~~GvP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~ 425 (481)
...|...+..|+.+|....++-++ .+..+.+.-+. + .-+.+. ..-|.++|.+.+.+
T Consensus 116 ~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~-Q--~~v~I~-----~~dt~~~L~~rl~~ 173 (211)
T 3p9x_A 116 AFPGLHAIEQAIRANVKVTGVTIHYVDEGMDTGPIIA-Q--EAVSIE-----EEDTLETLTTKIQA 173 (211)
T ss_dssp SSCSSCHHHHHHHTTCSEEEEEEEECCSSSSCSCEEE-E--EEEECC-----TTCCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCCeEEEEEEEEcCCCCCCCEEE-E--EEEecC-----CCCCHHHHHHHHHH
Confidence 445899999999999998888775 34444444432 2 223333 34477777776654
No 161
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=26.51 E-value=1e+02 Score=24.00 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=24.7
Q ss_pred CccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 15 GMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 15 ~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
........+.+|....+. ||+|+++....
T Consensus 28 ~~~~~~~al~lA~~A~a~-g~eV~vFf~~d 56 (134)
T 3mc3_A 28 DLDRTYAPLFMASISASM-EYETSVFFMIX 56 (134)
T ss_dssp GTHHHHHHHHHHHHHHHT-TCEEEEEECTT
T ss_pred CHHHHHHHHHHHHHHHHC-CCCEEEEEEeC
Confidence 456778889999999999 99999998883
No 162
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=26.44 E-value=3.4e+02 Score=23.97 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=24.3
Q ss_pred CCCCcEEE-EcCCCc-hHHHHHHHhCCceEEEechh
Q 011608 105 KPRPTALF-ADLFGT-EAFQIADEFEMLKYVYIASN 138 (481)
Q Consensus 105 ~~~~D~VI-~D~~~~-~~~~~A~~~giP~v~~~~~~ 138 (481)
...||+|| .|+..- .++.=|.++|||+|.+.-+.
T Consensus 156 ~~~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn 191 (256)
T 2vqe_B 156 KRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTD 191 (256)
T ss_dssp SSCCSEEEESCTTTTHHHHHHHHHTTCCCEECCCTT
T ss_pred ccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 45788865 776443 35566999999999876443
No 163
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=26.35 E-value=84 Score=24.24 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=23.0
Q ss_pred HhhcCCCCcEEEEcCCCch--HHHHHHHh---------CCceEEEech
Q 011608 101 ISTLKPRPTALFADLFGTE--AFQIADEF---------EMLKYVYIAS 137 (481)
Q Consensus 101 l~~~~~~~D~VI~D~~~~~--~~~~A~~~---------giP~v~~~~~ 137 (481)
+++. +||+||.|..... +..+++++ .+|+++++..
T Consensus 54 ~~~~--~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 54 MAEE--DYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSAD 99 (143)
T ss_dssp HHHS--CCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESC
T ss_pred HhcC--CCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCC
Confidence 3444 8999999987654 55555443 2787776653
No 164
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=26.14 E-value=1.8e+02 Score=26.47 Aligned_cols=106 Identities=19% Similarity=0.139 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCC
Q 011608 279 ANQMIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVG 358 (481)
Q Consensus 279 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~ 358 (481)
.+.-.++++.++..+..+++..+.. .-+|+.|.+..+..-+=+ |++
T Consensus 167 ~~~~~~~~~~l~~~~~DliVlagym---------------------~IL~~~~l~~~~~~~INi-----------HpS-- 212 (302)
T 3o1l_A 167 EPAFAEVSRLVGHHQADVVVLARYM---------------------QILPPQLCREYAHQVINI-----------HHS-- 212 (302)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSCC---------------------SCCCTTHHHHTTTCEEEE-----------ESS--
T ss_pred HHHHHHHHHHHHHhCCCEEEHhHhh---------------------hhcCHHHHhhhhCCeEEe-----------Ccc--
Confidence 3445668888888888888886432 456777766555321111 444
Q ss_pred ceeeecCCchhHHHHHcCcceeeccccc--chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHH
Q 011608 359 GFLSHCGWNSTLESIVNGVPLIVWPLYA--EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRI 426 (481)
Q Consensus 359 ~~I~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~v 426 (481)
+.=...|.+....|+.+|+...++-.+. +..+-+.-+. + --+.+. ..-|.++|.+.+.++
T Consensus 213 lLP~frG~~p~~~Ai~~G~k~tG~TvH~v~~~lD~GpII~-Q--~~v~I~-----~~dt~~~L~~r~~~~ 274 (302)
T 3o1l_A 213 FLPSFVGAKPYHQASLRGVKLIGATCHYVTEELDAGPIIE-Q--DVVRVS-----HRDSIENMVRFGRDV 274 (302)
T ss_dssp CTTSSCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEE-E--EEEECC-----TTCCHHHHHHHHHHH
T ss_pred cccCCCCccHHHHHHHcCCCeEEEEEEEECCCCcCCCeEE-E--EEEecC-----CCCCHHHHHHHHHHH
Confidence 3344579999999999999999888752 3334443332 2 223333 445888888777644
No 165
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=26.05 E-value=3.3e+02 Score=23.71 Aligned_cols=28 Identities=7% Similarity=-0.071 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCchHH-HHHHHhCCceEEE
Q 011608 107 RPTALFADLFGTEAF-QIADEFEMLKYVY 134 (481)
Q Consensus 107 ~~D~VI~D~~~~~~~-~~A~~~giP~v~~ 134 (481)
++|+||.-.++..++ .+.+.+++|++.+
T Consensus 69 g~d~iviaCnt~~~l~~lr~~~~iPvigi 97 (245)
T 3qvl_A 69 GVDGHVIASFGDPGLLAARELAQGPVIGI 97 (245)
T ss_dssp TCSEEEEC-CCCTTHHHHHHHCSSCEEEH
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCEECc
Confidence 899999887776665 4556679998764
No 166
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=26.04 E-value=1.9e+02 Score=24.61 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=64.7
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCcee
Q 011608 282 MIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFL 361 (481)
Q Consensus 282 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I 361 (481)
-.++.+.++..+..++++.+.. .-+|+.+.+..+...+-+ |++ +.=
T Consensus 68 ~~~~~~~l~~~~~Dliv~agy~---------------------~il~~~~l~~~~~~~iNi-----------HpS--lLP 113 (212)
T 1jkx_A 68 DRELIHEIDMYAPDVVVLAGFM---------------------RILSPAFVSHYAGRLLNI-----------HPS--LLP 113 (212)
T ss_dssp HHHHHHHHGGGCCSEEEESSCC---------------------SCCCHHHHHHTTTSEEEE-----------ESS--CTT
T ss_pred cHHHHHHHHhcCCCEEEEeChh---------------------hhCCHHHHhhccCCEEEE-----------ccC--ccc
Confidence 3567888888888888887422 456777776554321212 444 333
Q ss_pred eecCCchhHHHHHcCcceeecccc--cchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHH
Q 011608 362 SHCGWNSTLESIVNGVPLIVWPLY--AEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRI 426 (481)
Q Consensus 362 ~HgG~~s~~eal~~GvP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~v 426 (481)
...|...+..|+.+|....++-++ .+..+.+.-+. + .-+.+. ..-|.++|.+.+.++
T Consensus 114 ~yrG~~pi~~ai~~G~~~tGvTvh~v~~~~D~G~Ii~-Q--~~v~I~-----~~dt~~~L~~rl~~~ 172 (212)
T 1jkx_A 114 KYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVIL-Q--AKVPVF-----AGDSEDDITARVQTQ 172 (212)
T ss_dssp SCCSSCHHHHHHHTTCSEEEEEEEECCSSTTCSCEEE-E--EEEECC-----TTCCHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCCceEEEEEEEcccccCCCEEE-E--EEEEcC-----CCCCHHHHHHHHHHH
Confidence 456899999999999999888775 34444444432 2 223333 445788887776543
No 167
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=25.93 E-value=2e+02 Score=24.70 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=64.3
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCcee
Q 011608 282 MIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFL 361 (481)
Q Consensus 282 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I 361 (481)
-.++.+.++..+..++++.+.. .-+|+.+.+..+..-+-+ |++ +.=
T Consensus 72 d~~~~~~l~~~~~Dliv~agy~---------------------~il~~~~l~~~~~~~iNi-----------HpS--LLP 117 (215)
T 3tqr_A 72 ESTLQKTIDHYDPKLIVLAGFM---------------------RKLGKAFVSHYSGRMINI-----------HPS--LLP 117 (215)
T ss_dssp HHHHHHHHHTTCCSEEEESSCC---------------------SCCCHHHHHHTTTSEEEE-----------ESS--STT
T ss_pred HHHHHHHHHhcCCCEEEEccch---------------------hhCCHHHHhhccCCeEEe-----------Ccc--cCC
Confidence 4568888999899988887432 457777776554321111 444 333
Q ss_pred eecCCchhHHHHHcCcceeecccc--cchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHH
Q 011608 362 SHCGWNSTLESIVNGVPLIVWPLY--AEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRI 426 (481)
Q Consensus 362 ~HgG~~s~~eal~~GvP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~v 426 (481)
...|...+..|+.+|....++-.+ .+..+.+.-+. + .-+.+. ..-|.++|.+.+.++
T Consensus 118 ~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~-Q--~~v~I~-----~~dt~~~L~~rl~~~ 176 (215)
T 3tqr_A 118 KYTGLNTHERALAAGETEHGVSVHYVTEDLDAGPLIC-Q--ARLSIT-----PQDTPETLKTRVHAL 176 (215)
T ss_dssp TTCSSCHHHHHHHTTCSEEEEEEEECC-CTTCSCEEE-E--EEEECC-----TTCCHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHcCCCeEEEEEEEEcCCCCCCCEEE-E--EEEecC-----CCCCHHHHHHHHHHH
Confidence 446899999999999999888765 24444444332 2 223333 345788888777543
No 168
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=25.90 E-value=95 Score=30.13 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=34.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEecCCCchhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFAT-QNDFQVTIFVVATDTSTVQ 50 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~-r~Gh~Vt~~~~~~~~~~~~ 50 (481)
-+++..-|+.|=..=.+.++..+.. . |..|.|++.+.....+.
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~s~~~l~ 248 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEMSAQQLV 248 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSSCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCCCHHHHH
Confidence 4677777999999999999999875 6 88999999986654433
No 169
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=25.83 E-value=54 Score=30.13 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCCCeEEEEecCC
Q 011608 21 PVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 21 P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
....+|+++.++ |++||+++.+.
T Consensus 67 mG~aiAe~~~~~-Ga~V~lv~g~~ 89 (313)
T 1p9o_A 67 RGATSAEAFLAA-GYGVLFLYRAR 89 (313)
T ss_dssp HHHHHHHHHHHT-TCEEEEEEETT
T ss_pred HHHHHHHHHHHC-CCEEEEEecCC
Confidence 567899999999 99999999873
No 170
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=25.37 E-value=53 Score=28.42 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=33.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
|+|+|..-++.|=..-...||..|+++ |++|.++=...
T Consensus 1 mkI~vs~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~ 38 (254)
T 3kjh_A 1 MKLAVAGKGGVGKTTVAAGLIKIMASD-YDKIYAVDGDP 38 (254)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTTT-CSCEEEEEECT
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 578887778889999999999999999 99999987665
No 171
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=25.20 E-value=55 Score=25.15 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
.|+|+++-. |.+ ...+++.|.++ ||+|+++...
T Consensus 4 ~m~i~IiG~---G~i--G~~~a~~L~~~-g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGI---GRV--GYTLAKSLSEK-GHDIVLIDID 36 (140)
T ss_dssp -CEEEEECC---SHH--HHHHHHHHHHT-TCEEEEEESC
T ss_pred CCEEEEECC---CHH--HHHHHHHHHhC-CCeEEEEECC
Confidence 478888843 544 34688999999 9999988654
No 172
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=25.14 E-value=1.6e+02 Score=25.19 Aligned_cols=101 Identities=16% Similarity=0.112 Sum_probs=63.9
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCceee
Q 011608 283 IEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFLS 362 (481)
Q Consensus 283 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I~ 362 (481)
.++.+.++..+..+++..+.. .-+|+.+.+..+..-+-+ |++ +.=.
T Consensus 72 ~~~~~~L~~~~~Dlivlagy~---------------------~IL~~~~l~~~~~~~iNi-----------HpS--LLP~ 117 (215)
T 3kcq_A 72 EHISTVLREHDVDLVCLAGFM---------------------SILPEKFVTDWHHKIINI-----------HPS--LLPS 117 (215)
T ss_dssp HHHHHHHHHTTCSEEEESSCC---------------------SCCCHHHHHHTTTSEEEE-----------ESS--CTTT
T ss_pred HHHHHHHHHhCCCEEEEeCCc---------------------eEeCHHHHhhccCCeEEE-----------Ccc--cccC
Confidence 567788888888888887432 457777776654321111 444 3444
Q ss_pred ecCCchhHHHHHcCcceeecccc--cchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHH
Q 011608 363 HCGWNSTLESIVNGVPLIVWPLY--AEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRR 425 (481)
Q Consensus 363 HgG~~s~~eal~~GvP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~ 425 (481)
..|...+..|+.+|....++-.+ .+..+-+.-+. + .-+.+. ..-|.++|.+.+.+
T Consensus 118 yrG~~pi~~Ai~~G~~~tGvTvh~v~~~lD~G~Ii~-Q--~~v~I~-----~~dt~~~L~~rl~~ 174 (215)
T 3kcq_A 118 FKGLNAQEQAYKAGVKIAGCTLHYVYQELDAGPIIM-Q--AAVPVL-----REDTAESLASRILA 174 (215)
T ss_dssp TCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEE-E--EEEECC-----TTCCHHHHHHHHHH
T ss_pred CCCccHHHHHHHcCCCeEEEEEEEEcCCCCCCCEEE-E--EEeecC-----CCCCHHHHHHHHHH
Confidence 56899999999999998888775 24444444332 2 233333 34578888777754
No 173
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=25.02 E-value=3.2e+02 Score=23.18 Aligned_cols=108 Identities=9% Similarity=-0.027 Sum_probs=56.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CCeEEEEecCCCchhhhhhccCCCCCCceEEEecCCCCCCCCCCCCccHHH
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQN-DFQVTIFVVATDTSTVQSQLRNLPNPHLFNIVSLPPVDISALLDADASIVI 84 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (481)
+||+++..+..+. +-+|.+.+.+.. +++|..+.+.+........... .++.+..++...... .
T Consensus 1 ~riaVl~SG~Gs~---L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~----~gIp~~~~~~~~~~~-------r-- 64 (209)
T 1meo_A 1 ARVAVLISGTGSN---LQALIDSTREPNSSAQIDIVISNKAAVAGLDKAER----AGIPTRVINHKLYKN-------R-- 64 (209)
T ss_dssp CEEEEEESSSCTT---HHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHH----TTCCEEECCGGGSSS-------H--
T ss_pred CeEEEEEECCchH---HHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHH----cCCCEEEECccccCc-------h--
Confidence 3677776555544 444555555432 6899888766543322211111 134444443211110 0
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCcEEEEc-CCCchHHHHHHHhCCceEEEech
Q 011608 85 KIIFMMRESLPALRSSISTLKPRPTALFAD-LFGTEAFQIADEFEMLKYVYIAS 137 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~D~VI~D-~~~~~~~~~A~~~giP~v~~~~~ 137 (481)
....+.+.+.|++. ++|+||.= +.-.-...+-..+...++-++++
T Consensus 65 ------~~~~~~~~~~l~~~--~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 110 (209)
T 1meo_A 65 ------VEFDSAIDLVLEEF--SIDIVCLAGFMRILSGPFVQKWNGKMLNIHPS 110 (209)
T ss_dssp ------HHHHHHHHHHHHHT--TCCEEEEESCCSCCCHHHHHHTTTSEEEEESS
T ss_pred ------hhhhHHHHHHHHhc--CCCEEEEcchhhhCCHHHHhhhcCCEEEEccC
Confidence 11123456778888 99998844 33333444556666677777764
No 174
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=24.95 E-value=3.7e+02 Score=23.98 Aligned_cols=24 Identities=13% Similarity=-0.053 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEE
Q 011608 277 LSANQMIEVAWGLELSQQRFIWVV 300 (481)
Q Consensus 277 ~~~~~~~~~~~al~~~~~~~i~~~ 300 (481)
.+.+...++++++.+.+.+.|-..
T Consensus 23 ~~~e~k~~i~~~L~~~Gv~~IE~g 46 (295)
T 1ydn_A 23 VPTADKIALINRLSDCGYARIEAT 46 (295)
T ss_dssp CCHHHHHHHHHHHTTTTCSEEEEE
T ss_pred cCHHHHHHHHHHHHHcCcCEEEEc
Confidence 678889999999999999988765
No 175
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=24.89 E-value=86 Score=24.90 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=30.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDT 46 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (481)
++++..+..-.+++.+.+|...+.. |++|+++.+..-.
T Consensus 11 ~II~~sg~~d~~~~a~~lA~~Aaa~-g~eV~iF~t~~gv 48 (144)
T 2qs7_A 11 SIIVFSGTIDKLMPVGILTSGAAAS-GYEVNLFFTFWGL 48 (144)
T ss_dssp EEEECCCSHHHHHHHHHHHHHHHHT-TCEEEEEECHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHHc-CCcEEEEEehHHH
Confidence 3344445678899999999999999 9999999988433
No 176
>3ogi_A ESXP, putative ESAT-6-like protein 6; structural genomics, PSI-2, protein structure initiative; 2.55A {Mycobacterium tuberculosis} PDB: 4gzr_A
Probab=24.75 E-value=1.1e+02 Score=21.58 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHH----HHHHhh----cCCChHHHHHHHHHHHHHHHHHHHH
Q 011608 432 GQALRSRVKELKHS----AKKAST----KGGSSYNALSQVAKQCEMSLQGLMA 476 (481)
Q Consensus 432 ~~~~r~~a~~l~~~----~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~ 476 (481)
|..+|..|..|..+ ++...+ =||....++.+||++|.+.||-|-.
T Consensus 14 Ga~iraQAaslEaeHqaI~~dvlaa~dFWGGagS~a~qeFit~LgRNFqvIyE 66 (101)
T 3ogi_A 14 GAMIRAQAGLLEAEHQAIVRDVLAAGDFWGGAGSVACQEFITQLGRNFQVIYE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---------CTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccchHHHHHHHHHHHHHhhhhcCcccHHHHHHHHHHhhhHHHHHH
Confidence 45566666655444 222222 2577788999999999999997754
No 177
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=24.67 E-value=4.9e+02 Score=25.27 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=34.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhh
Q 011608 8 IALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQS 51 (481)
Q Consensus 8 vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~ 51 (481)
+++..-|+.|-..=.+++|..++.+.|..|.|++.+.....+..
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~ 288 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAE 288 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHH
T ss_pred EEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHH
Confidence 56677799999999999999987632789999999976554433
No 178
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=24.42 E-value=49 Score=31.12 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEE
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIF 40 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~ 40 (481)
.|||+|+--+-. -+.+|..|+++ ||+|+++
T Consensus 1 sm~V~IVGaGpa-----Gl~~A~~L~~~-G~~v~v~ 30 (412)
T 4hb9_A 1 SMHVGIIGAGIG-----GTCLAHGLRKH-GIKVTIY 30 (412)
T ss_dssp CCEEEEECCSHH-----HHHHHHHHHHT-TCEEEEE
T ss_pred CCEEEEECcCHH-----HHHHHHHHHhC-CCCEEEE
Confidence 389999976633 48899999999 9999987
No 179
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=24.19 E-value=3.9e+02 Score=23.90 Aligned_cols=41 Identities=17% Similarity=0.013 Sum_probs=30.8
Q ss_pred hHHHHHHHhhcCCCCcEEEEcCCCchH--HHHHHHhCCceEEEec
Q 011608 94 LPALRSSISTLKPRPTALFADLFGTEA--FQIADEFEMLKYVYIA 136 (481)
Q Consensus 94 ~~~~~~~l~~~~~~~D~VI~D~~~~~~--~~~A~~~giP~v~~~~ 136 (481)
...+.+.+++- +..+|+++..+... -.+|+..|++++.+.+
T Consensus 226 l~~l~~~ik~~--~v~~If~e~~~~~~~~~~ia~~~g~~v~~ld~ 268 (291)
T 1pq4_A 226 LKQLIDTAKEN--NLTMVFGETQFSTKSSEAIAAEIGAGVELLDP 268 (291)
T ss_dssp HHHHHHHHHTT--TCCEEEEETTSCCHHHHHHHHHHTCEEEEECT
T ss_pred HHHHHHHHHHc--CCCEEEEeCCCChHHHHHHHHHcCCeEEEEcC
Confidence 34555666666 99999999877763 3689999999887654
No 180
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=24.16 E-value=1.1e+02 Score=26.95 Aligned_cols=42 Identities=19% Similarity=0.108 Sum_probs=29.9
Q ss_pred hHHHHHHHhhcCCCCcEEEEcCCCc-------hHHHHHHHhCCceEEEe
Q 011608 94 LPALRSSISTLKPRPTALFADLFGT-------EAFQIADEFEMLKYVYI 135 (481)
Q Consensus 94 ~~~~~~~l~~~~~~~D~VI~D~~~~-------~~~~~A~~~giP~v~~~ 135 (481)
.+.+.+.++++..+||+|++|-... -|..+.-.+++|+|.+.
T Consensus 96 ~P~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVA 144 (246)
T 3ga2_A 96 LPLIIEAAKKLETEPDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGIA 144 (246)
T ss_dssp HHHHHHHHHHCSSCCSCEEEEBCSSSSTTSCCHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHHhcCCCCCEEEEcCcEEecCCCcchhheeeeecCCCEEeee
Confidence 3566667777767899999994322 24467777889998865
No 181
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=24.14 E-value=66 Score=26.86 Aligned_cols=40 Identities=8% Similarity=0.080 Sum_probs=31.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
||++.-.++.|=+ =...+.+.|.++ |++|.++.++.....
T Consensus 4 ~IllgvTGs~aa~-k~~~l~~~L~~~-g~~V~vv~T~~A~~f 43 (181)
T 1g63_A 4 KLLICATASINVI-NINHYIVELKQH-FDEVNILFSPSSKNF 43 (181)
T ss_dssp CEEEEECSCGGGG-GHHHHHHHHTTT-SSCEEEEECGGGGGT
T ss_pred EEEEEEECHHHHH-HHHHHHHHHHHC-CCEEEEEEchhHHHH
Confidence 5777776776655 678999999999 999999999955444
No 182
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=23.79 E-value=1.7e+02 Score=26.48 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=65.4
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCcee
Q 011608 282 MIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFL 361 (481)
Q Consensus 282 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I 361 (481)
-.++++.++..+..+++..+. ..-+|+.|.+..+..-+-+ |++ +.=
T Consensus 155 ~~~~~~~l~~~~~Dlivlagy---------------------~~il~~~~l~~~~~~~iNi-----------HpS--lLP 200 (288)
T 3obi_A 155 EAAITALIAQTHTDLVVLARY---------------------MQILSDEMSARLAGRCINI-----------HHS--FLP 200 (288)
T ss_dssp HHHHHHHHHHHTCCEEEESSC---------------------CSCCCHHHHHHTTTSEEEE-----------EEE--CSS
T ss_pred HHHHHHHHHhcCCCEEEhhhh---------------------hhhCCHHHHhhhcCCeEEe-----------Ccc--ccc
Confidence 356888888888888887642 2457787776655321111 444 344
Q ss_pred eecCCchhHHHHHcCcceeeccccc--chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHH
Q 011608 362 SHCGWNSTLESIVNGVPLIVWPLYA--EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRI 426 (481)
Q Consensus 362 ~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~v 426 (481)
...|.+....|+.+|+...++-.+. +..+-+.-+. + .-+.+. ..-|.++|.+.+.++
T Consensus 201 ~~rG~~p~~~A~~~G~~~~G~Tvh~v~~~~D~GpIi~-Q--~~v~i~-----~~dt~~~L~~r~~~~ 259 (288)
T 3obi_A 201 GFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIID-Q--DVERIS-----HRDTPADLVRKGRDI 259 (288)
T ss_dssp CCCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEE-E--EEEECC-----TTCCHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHcCCCEEEEEEEEECCCCcCCCeEE-E--EEEecC-----CCCCHHHHHHHHHHH
Confidence 4579999999999999998887752 3344443332 2 223333 445788888777654
No 183
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=23.77 E-value=1.7e+02 Score=26.98 Aligned_cols=28 Identities=4% Similarity=-0.033 Sum_probs=22.4
Q ss_pred CCChHHHHHHHHHHHhCCCcEEEEEcCC
Q 011608 276 TLSANQMIEVAWGLELSQQRFIWVVRPP 303 (481)
Q Consensus 276 ~~~~~~~~~~~~al~~~~~~~i~~~~~~ 303 (481)
..+.+....+.+++.....+.||...++
T Consensus 61 g~d~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (331)
T 4e5s_A 61 SSISSRVQDLHEAFRDPNVKAILTTLGG 88 (331)
T ss_dssp CCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 3456668889999999889999998654
No 184
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=23.53 E-value=1.7e+02 Score=26.49 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=65.3
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCcee
Q 011608 282 MIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFL 361 (481)
Q Consensus 282 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I 361 (481)
-.++.+.++..+..+++..+.. .-+|+.+.+..+..-+-+ |++ +.=
T Consensus 160 ~~~~~~~l~~~~~Dlivla~y~---------------------~il~~~~l~~~~~~~iNi-----------HpS--lLP 205 (292)
T 3lou_A 160 EAQWLDVFETSGAELVILARYM---------------------QVLSPEASARLANRAINI-----------HHS--FLP 205 (292)
T ss_dssp HHHHHHHHHHHTCSEEEESSCC---------------------SCCCHHHHHHTTTSEEEE-----------EEE--CSS
T ss_pred HHHHHHHHHHhCCCEEEecCch---------------------hhCCHHHHhhhcCCeEEe-----------CCC--cCc
Confidence 3467888888888888876422 457787777665421111 444 444
Q ss_pred eecCCchhHHHHHcCcceeeccccc--chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHH
Q 011608 362 SHCGWNSTLESIVNGVPLIVWPLYA--EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRI 426 (481)
Q Consensus 362 ~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~v 426 (481)
...|.+....|+.+|+...++-.+. +..+-+.-+. + .-+.+. ..-|.++|.+.+.++
T Consensus 206 ~~rG~~p~~~Ai~~G~~~~G~Tvh~v~~~lD~G~Ii~-Q--~~v~i~-----~~dt~~~L~~r~~~~ 264 (292)
T 3lou_A 206 GFKGAKPYHQAHARGVKLIGATAHFVTDDLDEGPIIE-Q--VVERVD-----HSYRPEQLLAVGRDV 264 (292)
T ss_dssp CCCSSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEE-E--EEEECC-----TTCCHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCCeEEEEEEEEcCCCcCCCEEE-E--EEEEcC-----CCCCHHHHHHHHHHH
Confidence 5679999999999999998888752 3334443332 2 223333 445788888777544
No 185
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=23.45 E-value=79 Score=30.84 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=27.4
Q ss_pred HHHHHHhhcCCCCcEEEEcCCCchHHHHHHHhCCceEEE
Q 011608 96 ALRSSISTLKPRPTALFADLFGTEAFQIADEFEMLKYVY 134 (481)
Q Consensus 96 ~~~~~l~~~~~~~D~VI~D~~~~~~~~~A~~~giP~v~~ 134 (481)
.+++++++. +||++|.+.. ...+|+++|||++.+
T Consensus 366 ~le~~i~~~--~pDllig~~~---~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 366 DLEHAARAG--QAQLVIGNSH---ALASARRLGVPLLRA 399 (458)
T ss_dssp HHHHHHHHH--TCSEEEECTT---HHHHHHHTTCCEEEC
T ss_pred HHHHHHHhc--CCCEEEEChh---HHHHHHHcCCCEEEe
Confidence 356778888 9999998743 567899999999874
No 186
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=23.41 E-value=54 Score=32.04 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
+.|||+++-.+-.| ..||+.|.+. ||+|+++=..
T Consensus 2 ~~M~iiI~G~G~vG-----~~la~~L~~~-~~~v~vId~d 35 (461)
T 4g65_A 2 NAMKIIILGAGQVG-----GTLAENLVGE-NNDITIVDKD 35 (461)
T ss_dssp CCEEEEEECCSHHH-----HHHHHHTCST-TEEEEEEESC
T ss_pred CcCEEEEECCCHHH-----HHHHHHHHHC-CCCEEEEECC
Confidence 56999999877555 5799999999 9999998655
No 187
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=23.31 E-value=72 Score=28.08 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=33.1
Q ss_pred CCCCCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc
Q 011608 1 MQTTKTHIALLAS--PGMGHFIPVLELGKRFATQNDFQVTIFVVATDT 46 (481)
Q Consensus 1 m~~~~~~vvl~~~--p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (481)
|+..+++++.+.. ++.|=..-...||..|+ + |++|.++=.....
T Consensus 22 ~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~-g~~VlliD~D~~~ 67 (267)
T 3k9g_A 22 MDNKKPKIITIASIKGGVGKSTSAIILATLLS-K-NNKVLLIDMDTQA 67 (267)
T ss_dssp ----CCEEEEECCSSSSSCHHHHHHHHHHHHT-T-TSCEEEEEECTTC
T ss_pred CCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-C-CCCEEEEECCCCC
Confidence 4556677777754 67789999999999999 9 9999999776544
No 188
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=23.03 E-value=1e+02 Score=22.96 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEe
Q 011608 3 TTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFV 41 (481)
Q Consensus 3 ~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~ 41 (481)
+..|+|+++|..+.|+-.-.-.+-+.+.++ |+++.+-.
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~-gi~~~i~~ 39 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSK-NINATIEA 39 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHH-TCSEEEEE
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHC-CCCeEEEE
Confidence 445899999999998886667777888888 88765533
No 189
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=23.03 E-value=3.1e+02 Score=25.32 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=39.8
Q ss_pred ccCchhhhhccccCCceeeecCCc----hhHHHHHcCcceee-ccccc--chhhhHHHHHHhhceeEecc
Q 011608 344 DWAPQVEILGHASVGGFLSHCGWN----STLESIVNGVPLIV-WPLYA--EQKMNATMLAEELGVAVRPN 406 (481)
Q Consensus 344 ~~~pq~~lL~~~~~~~~I~HgG~~----s~~eal~~GvP~v~-~P~~~--DQ~~na~~v~~~~G~g~~~~ 406 (481)
.+-...++|..+++++++--.-.. -+.+|+.+|+++++ -|+.. ++-.....++++.|+-+.+.
T Consensus 53 ~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~ 122 (359)
T 3e18_A 53 IYESYEAVLADEKVDAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVH 122 (359)
T ss_dssp BCSCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred eeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEE
Confidence 345678888877666666544333 36788999999988 56653 34443334446667655554
No 190
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=22.81 E-value=75 Score=28.77 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=24.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
+|+++ ++.|.+ -..++++|.++ ||+|+.++-..
T Consensus 13 ~ilVt--GatG~i--G~~l~~~L~~~-g~~V~~l~R~~ 45 (318)
T 2r6j_A 13 KILIF--GGTGYI--GNHMVKGSLKL-GHPTYVFTRPN 45 (318)
T ss_dssp CEEEE--TTTSTT--HHHHHHHHHHT-TCCEEEEECTT
T ss_pred eEEEE--CCCchH--HHHHHHHHHHC-CCcEEEEECCC
Confidence 45444 556665 46788999999 99999988654
No 191
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=22.69 E-value=1.6e+02 Score=26.57 Aligned_cols=103 Identities=17% Similarity=0.058 Sum_probs=65.0
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCcee
Q 011608 282 MIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFL 361 (481)
Q Consensus 282 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I 361 (481)
-.++++.++..+..+++..+. ..-+|+.|.+..+..-+=+ |++ +.=
T Consensus 154 ~~~~~~~l~~~~~Dlivlagy---------------------m~il~~~~l~~~~~~~iNi-----------HpS--lLP 199 (287)
T 3nrb_A 154 ESQIKNIVTQSQADLIVLARY---------------------MQILSDDLSAFLSGRCINI-----------HHS--FLP 199 (287)
T ss_dssp HHHHHHHHHHHTCSEEEESSC---------------------CSCCCHHHHHHHTTSEEEE-----------ESS--CTT
T ss_pred HHHHHHHHHHhCCCEEEhhhh---------------------hhhcCHHHHhhccCCeEEE-----------Ccc--ccc
Confidence 346788888888888887642 2457788877665421111 444 333
Q ss_pred eecCCchhHHHHHcCcceeeccccc--chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHH
Q 011608 362 SHCGWNSTLESIVNGVPLIVWPLYA--EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRI 426 (481)
Q Consensus 362 ~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~v 426 (481)
...|.+....|+.+|+...++-.+. +..+-+.-+. + --+.+. ..-|.++|.+.+.++
T Consensus 200 ~~rG~~p~~~Ai~~G~k~tG~Tvh~v~~~lD~GpIi~-Q--~~v~i~-----~~dt~~~L~~r~~~~ 258 (287)
T 3nrb_A 200 GFKGAKPYHQAHTRGVKLIGATAHFVTADLDEGPIIA-Q--DVEHVS-----HRDSAEDLVRKGRDI 258 (287)
T ss_dssp TTCSSCHHHHHHHHTCSEEEEEEEECCSSSSCCCEEE-E--EEEECC-----TTCCHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHcCCCeEEEEEEEECCCCcCCCEEE-E--EEEecC-----CCCCHHHHHHHHHHH
Confidence 4569999999999999999888752 3333333331 2 223333 445788888777654
No 192
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=22.69 E-value=43 Score=33.17 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 3 TTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 3 ~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
++|.|||++-.+..| +.+|+.|.+. |++||++...+
T Consensus 40 ~~KprVVIIGgG~AG-----l~~A~~L~~~-~~~VtLId~~~ 75 (502)
T 4g6h_A 40 SDKPNVLILGSGWGA-----ISFLKHIDTK-KYNVSIISPRS 75 (502)
T ss_dssp CSSCEEEEECSSHHH-----HHHHHHSCTT-TCEEEEEESSS
T ss_pred CCCCCEEEECCcHHH-----HHHHHHhhhC-CCcEEEECCCC
Confidence 346899999866444 6789999988 99999998764
No 193
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=22.48 E-value=3.3e+02 Score=24.81 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=38.4
Q ss_pred ccCchhhhhccccCCceeeecCCc----hhHHHHHcCcceee-ccccc--chhhhHHHHHHhhceeEecc
Q 011608 344 DWAPQVEILGHASVGGFLSHCGWN----STLESIVNGVPLIV-WPLYA--EQKMNATMLAEELGVAVRPN 406 (481)
Q Consensus 344 ~~~pq~~lL~~~~~~~~I~HgG~~----s~~eal~~GvP~v~-~P~~~--DQ~~na~~v~~~~G~g~~~~ 406 (481)
-+-...+++..+.+++++----.. -+.+|+.+|+++++ -|+.. ++-......+++.|+-+.+.
T Consensus 53 ~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~ 122 (344)
T 3euw_A 53 AVASPDEVFARDDIDGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLG 122 (344)
T ss_dssp EESSHHHHTTCSCCCEEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEEC
T ss_pred eeCCHHHHhcCCCCCEEEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEec
Confidence 344667888866666666544433 36788999999887 46653 33333333346667655554
No 194
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=22.27 E-value=88 Score=31.51 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=40.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhhhh
Q 011608 4 TKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQSQ 52 (481)
Q Consensus 4 ~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 52 (481)
.+.+|++.+.++..|-....-++..|..+ |++|++++..-..+.+...
T Consensus 97 ~~~kVLlatv~GD~HdiG~~iva~~L~~~-G~eVi~LG~~vP~e~iv~a 144 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIGKNIVGVVLQCN-NYEIVDLGVMVPAEKILRT 144 (579)
T ss_dssp CSCEEEEEEBTTCCCCHHHHHHHHHHHTT-TCEEEECCSSBCHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHH
Confidence 36799999999999999999999999999 9999999877544444433
No 195
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=22.07 E-value=51 Score=25.70 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=24.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
.||+++-. |. -...+++.|.++ ||+|+++-..
T Consensus 7 ~~v~I~G~---G~--iG~~la~~L~~~-g~~V~~id~~ 38 (141)
T 3llv_A 7 YEYIVIGS---EA--AGVGLVRELTAA-GKKVLAVDKS 38 (141)
T ss_dssp CSEEEECC---SH--HHHHHHHHHHHT-TCCEEEEESC
T ss_pred CEEEEECC---CH--HHHHHHHHHHHC-CCeEEEEECC
Confidence 47777764 43 356899999999 9999988764
No 196
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=22.04 E-value=4.3e+02 Score=23.91 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=38.2
Q ss_pred cCchhhhhccccCCceeeecCCc----hhHHHHHcCcceee-ccccc--chhhhHHHHHHhhceeEecc
Q 011608 345 WAPQVEILGHASVGGFLSHCGWN----STLESIVNGVPLIV-WPLYA--EQKMNATMLAEELGVAVRPN 406 (481)
Q Consensus 345 ~~pq~~lL~~~~~~~~I~HgG~~----s~~eal~~GvP~v~-~P~~~--DQ~~na~~v~~~~G~g~~~~ 406 (481)
+-...++|..+.+++++--.-.. -+.+|+.+|+++++ -|+.. ++-.....++++.|+-+.+.
T Consensus 56 ~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~ 124 (330)
T 3e9m_A 56 YGSYEELCKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEA 124 (330)
T ss_dssp BSSHHHHHHCTTCSEEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred eCCHHHHhcCCCCCEEEEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 44667888766666666544433 36788999999887 46553 34333333346667766654
No 197
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=21.99 E-value=1.5e+02 Score=26.75 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=24.0
Q ss_pred CCceeeecCCchhHHHHH------cCcceeeccc
Q 011608 357 VGGFLSHCGWNSTLESIV------NGVPLIVWPL 384 (481)
Q Consensus 357 ~~~~I~HgG~~s~~eal~------~GvP~v~~P~ 384 (481)
.+++|.-||-||+.|++. .++|+-++|.
T Consensus 64 ~d~vv~~GGDGTl~~v~~~l~~~~~~~~l~iiP~ 97 (304)
T 3s40_A 64 VDLIIVFGGDGTVFECTNGLAPLEIRPTLAIIPG 97 (304)
T ss_dssp CSEEEEEECHHHHHHHHHHHTTCSSCCEEEEEEC
T ss_pred CCEEEEEccchHHHHHHHHHhhCCCCCcEEEecC
Confidence 448999999999999864 5789999997
No 198
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=21.93 E-value=4.4e+02 Score=24.52 Aligned_cols=32 Identities=13% Similarity=0.024 Sum_probs=25.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
++|+++..+.. .+.+++++++. |++|+++..+
T Consensus 8 ~~ilI~g~g~~-----~~~~~~a~~~~-G~~~v~v~~~ 39 (403)
T 4dim_A 8 KRLLILGAGRG-----QLGLYKAAKEL-GIHTIAGTMP 39 (403)
T ss_dssp CEEEEECCCGG-----GHHHHHHHHHH-TCEEEEEECS
T ss_pred CEEEEECCcHh-----HHHHHHHHHHC-CCEEEEEcCC
Confidence 57888765543 46799999999 9999999754
No 199
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=21.87 E-value=6e+02 Score=29.41 Aligned_cols=43 Identities=5% Similarity=0.025 Sum_probs=36.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchhhh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTSTVQ 50 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~ 50 (481)
-+++.--|+.|-..=.++++.....+ |..|.|++.+...+...
T Consensus 385 lilI~G~pGsGKTtLaLq~a~~~~~~-G~~vlyis~E~s~~~~~ 427 (1706)
T 3cmw_A 385 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY 427 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchHHHH
Confidence 36677779999999999999999999 99999999997665543
No 200
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=21.61 E-value=76 Score=28.95 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCC
Q 011608 5 KTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVAT 44 (481)
Q Consensus 5 ~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~ 44 (481)
+|+|+++..+ ....+++++.++ ||+|.++.+..
T Consensus 2 ~m~Ililg~g------~~~~l~~a~~~~-G~~v~~~~~~~ 34 (334)
T 2r85_A 2 KVRIATYASH------SALQILKGAKDE-GFETIAFGSSK 34 (334)
T ss_dssp CSEEEEESST------THHHHHHHHHHT-TCCEEEESCGG
T ss_pred ceEEEEECCh------hHHHHHHHHHhC-CCEEEEEECCC
Confidence 4789888855 567899999999 99999887663
No 201
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=21.58 E-value=72 Score=26.95 Aligned_cols=39 Identities=5% Similarity=-0.008 Sum_probs=32.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCc
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDT 46 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 46 (481)
.||++.-.++.|=+. ...|.+.|.++ |++|.++.++...
T Consensus 9 k~IllgvTGs~aa~k-~~~l~~~L~~~-g~~V~vv~T~~A~ 47 (194)
T 1p3y_1 9 KKLLIGICGSISSVG-ISSYLLYFKSF-FKEIRVVMTKTAE 47 (194)
T ss_dssp CEEEEEECSCGGGGG-THHHHHHHTTT-SSEEEEEECHHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHHHC-CCEEEEEEchhHH
Confidence 578888878777675 78999999999 9999999998443
No 202
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=21.49 E-value=53 Score=27.59 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=32.4
Q ss_pred chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHHH
Q 011608 387 EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRILVDKE----GQALRSRVKELKHSAKK 448 (481)
Q Consensus 387 DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~vl~~~~----~~~~r~~a~~l~~~~~~ 448 (481)
+..+.+.. .+..|+|+.+ |+|+|.++|.++++... -+.|+ +.-.+-..+|.
T Consensus 100 ~~id~~~F-e~~cGVGV~V---------T~EqI~~~V~~~i~~~k~~i~~~RY~-~~g~ll~~vr~ 154 (187)
T 3tl4_X 100 EASTKMGM-NENSGVGIEI---------TEDQVRNYVMQYIQENKERILTERYK-LVPGIFADVKN 154 (187)
T ss_dssp GGCCHHHH-HHTTTTTCCC---------CHHHHHHHHHHHHHHTHHHHHHHGGG-GHHHHHHHHHT
T ss_pred CCCCHHHH-HHHCCCCeEe---------CHHHHHHHHHHHHHHhHHHHHHhccc-cHHHHHHHHhc
Confidence 33334433 3677999884 89999999999996422 13355 55555555544
No 203
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=21.48 E-value=1e+02 Score=23.48 Aligned_cols=41 Identities=7% Similarity=0.079 Sum_probs=27.4
Q ss_pred CCCCCcEEEEEcCCCc-cCH-HHHHHHHHHHHhCCC--CeEEEEecC
Q 011608 1 MQTTKTHIALLASPGM-GHF-IPVLELGKRFATQND--FQVTIFVVA 43 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~-GHi-~P~l~La~~L~~r~G--h~Vt~~~~~ 43 (481)
|+.. ++++|+-+-.. -.. +-.+.+|....++ | |+|.++..-
T Consensus 4 ~~~~-~K~~ivi~s~d~~~~~~~al~~A~~a~~~-G~~~eV~i~~~G 48 (117)
T 2fb6_A 4 MSAN-DKLTILWTTDNKDTVFNMLAMYALNSKNR-GWWKHINIILWG 48 (117)
T ss_dssp SSTT-SEEEEEECCCCHHHHHHTHHHHHHHHHHH-TSCSEEEEEECS
T ss_pred cccC-CeEEEEEEcCChHHHHHHHHHHHHHHHHc-CCCCcEEEEEEC
Confidence 4444 66666554422 222 3467889899999 8 899999877
No 204
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis}
Probab=21.47 E-value=80 Score=26.28 Aligned_cols=29 Identities=3% Similarity=-0.114 Sum_probs=14.0
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHH
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRF 29 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L 29 (481)
|...+|+|+|+|.+-..==--.-.|.+.+
T Consensus 30 m~~~~mkVLFVC~GNiCRSpmAE~l~r~~ 58 (180)
T 4egs_A 30 MGRGSMRVLFVCTGNTCRSPMAEGIFNAK 58 (180)
T ss_dssp ----CCEEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCcccCHHHHHHHHHH
Confidence 44556677777766555444444444444
No 205
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.46 E-value=2.8e+02 Score=22.90 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011608 435 LRSRVKELKHSAKKASTKGGSSYNALSQVAKQCEMSLQGLMA 476 (481)
Q Consensus 435 ~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 476 (481)
.|+..+..+.+++..+....-....++.+++++..+++.+..
T Consensus 90 Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 90 LRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666778888888888777765554
No 206
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=21.38 E-value=1.9e+02 Score=25.99 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=64.4
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCcee
Q 011608 282 MIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFL 361 (481)
Q Consensus 282 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I 361 (481)
-.++.+.++..+..+++..+.. .-+|+.+.+..+..-+-+ |++ +.=
T Consensus 155 ~~~~~~~l~~~~~Dlivla~y~---------------------~il~~~~l~~~~~~~iNi-----------HpS--lLP 200 (286)
T 3n0v_A 155 ERKVLQVIEETGAELVILARYM---------------------QVLSPELCRRLDGWAINI-----------HHS--LLP 200 (286)
T ss_dssp HHHHHHHHHHHTCSEEEESSCC---------------------SCCCHHHHHHTTTSEEEE-----------EEC--SST
T ss_pred HHHHHHHHHhcCCCEEEecccc---------------------cccCHHHHhhhcCCeEEe-----------ccc--ccc
Confidence 3467888888888888876421 457787776655421111 444 334
Q ss_pred eecCCchhHHHHHcCcceeeccccc--chhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHHH
Q 011608 362 SHCGWNSTLESIVNGVPLIVWPLYA--EQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRRI 426 (481)
Q Consensus 362 ~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~v 426 (481)
...|.+....|+.+|+...++-.+. +..+-+.-+. + --+.+. ..-|.++|.+.+.++
T Consensus 201 ~~rG~~p~~~Ai~~G~~~~G~Tvh~v~~~lD~GpIi~-Q--~~~~i~-----~~dt~~~L~~r~~~~ 259 (286)
T 3n0v_A 201 GFKGAKPYHQAYNKGVKMVGATAHYINNDLDEGPIIA-Q--GVEVVD-----HSHYPEDLIAKGRDI 259 (286)
T ss_dssp TCCCSCHHHHHHHHTCSEEEEEEEECCSSTTCSCEEE-E--EEEECC-----TTCCHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCCeEEEEEEEEcCCCCCCceeE-E--EEEEcC-----CCCCHHHHHHHHHHH
Confidence 4569999999999999998888752 3333333331 2 223333 445788888777544
No 207
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=21.18 E-value=1.1e+02 Score=25.15 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=24.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 6 THIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 6 ~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
++|+++ ++.|. --..++++|.++ ||+|+.++-.
T Consensus 4 ~~ilVt--GatG~--iG~~l~~~l~~~-g~~V~~~~r~ 36 (206)
T 1hdo_A 4 KKIAIF--GATGQ--TGLTTLAQAVQA-GYEVTVLVRD 36 (206)
T ss_dssp CEEEEE--STTSH--HHHHHHHHHHHT-TCEEEEEESC
T ss_pred CEEEEE--cCCcH--HHHHHHHHHHHC-CCeEEEEEeC
Confidence 566655 44453 357889999999 9999998754
No 208
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=21.16 E-value=55 Score=27.67 Aligned_cols=41 Identities=7% Similarity=-0.014 Sum_probs=29.5
Q ss_pred HHHHHHhhc-CCCCcEEEEcCCCchHHHHHHHhCCceEEEechhH
Q 011608 96 ALRSSISTL-KPRPTALFADLFGTEAFQIADEFEMLKYVYIASNA 139 (481)
Q Consensus 96 ~~~~~l~~~-~~~~D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~ 139 (481)
.+.+.++++ .++.++||.|. .+..+|+++|+|.+.+.++..
T Consensus 130 e~~~~i~~l~~~G~~vvVG~~---~~~~~A~~~Gl~~vli~sg~e 171 (196)
T 2q5c_A 130 EITTLISKVKTENIKIVVSGK---TVTDEAIKQGLYGETINSGEE 171 (196)
T ss_dssp GHHHHHHHHHHTTCCEEEECH---HHHHHHHHTTCEEEECCCCHH
T ss_pred HHHHHHHHHHHCCCeEEECCH---HHHHHHHHcCCcEEEEecCHH
Confidence 444444444 44999999974 246889999999999877543
No 209
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=21.15 E-value=57 Score=30.60 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecC
Q 011608 1 MQTTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVA 43 (481)
Q Consensus 1 m~~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~ 43 (481)
|+..+|+|.++-.+..| ..+|..|.+. ||+|++....
T Consensus 25 m~~~~mkI~VIGaG~mG-----~alA~~La~~-G~~V~l~~r~ 61 (356)
T 3k96_A 25 MEPFKHPIAILGAGSWG-----TALALVLARK-GQKVRLWSYE 61 (356)
T ss_dssp --CCCSCEEEECCSHHH-----HHHHHHHHTT-TCCEEEECSC
T ss_pred ccccCCeEEEECccHHH-----HHHHHHHHHC-CCeEEEEeCC
Confidence 55556899999887666 4689999999 9999998765
No 210
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=21.13 E-value=1.3e+02 Score=30.22 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=24.0
Q ss_pred cCCceeeecC------CchhHHHHHcCcceeecc
Q 011608 356 SVGGFLSHCG------WNSTLESIVNGVPLIVWP 383 (481)
Q Consensus 356 ~~~~~I~HgG------~~s~~eal~~GvP~v~~P 383 (481)
..+++++|.| .+.+.||.+.++|+|++-
T Consensus 68 k~~v~~~tsGpG~~N~~~gl~~A~~~~vPll~It 101 (590)
T 1v5e_A 68 NLGVTVGSGGPGASHLINGLYDAAMDNIPVVAIL 101 (590)
T ss_dssp CCCEEEECTTHHHHTTHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEeCcChHHHHHHHHHHHHHhcCCCEEEEc
Confidence 3558999998 668999999999999974
No 211
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=21.12 E-value=81 Score=29.23 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=23.3
Q ss_pred HHHhhcCCCCcEEEEcCCCchH-HHHHHHhCCceEEEe
Q 011608 99 SSISTLKPRPTALFADLFGTEA-FQIADEFEMLKYVYI 135 (481)
Q Consensus 99 ~~l~~~~~~~D~VI~D~~~~~~-~~~A~~~giP~v~~~ 135 (481)
+.|..+ +||+||........ ....+.+|||++.+.
T Consensus 90 E~Ilal--~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~ 125 (346)
T 2etv_A 90 ESLITL--QPDVVFITYVDRXTAXDIQEXTGIPVVVLS 125 (346)
T ss_dssp HHHHHH--CCSEEEEESCCHHHHHHHHHHHTSCEEEEC
T ss_pred HHHhcC--CCCEEEEeCCccchHHHHHHhcCCcEEEEe
Confidence 344455 99999976543222 245678899998864
No 212
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=21.08 E-value=1.6e+02 Score=22.28 Aligned_cols=35 Identities=9% Similarity=0.286 Sum_probs=22.3
Q ss_pred HHhhcCCCCcEEEEcCCCch--HHHHHHHh-------CCceEEEec
Q 011608 100 SISTLKPRPTALFADLFGTE--AFQIADEF-------EMLKYVYIA 136 (481)
Q Consensus 100 ~l~~~~~~~D~VI~D~~~~~--~~~~A~~~-------giP~v~~~~ 136 (481)
.+++. +||+||.|..... +..+.+.+ .+|++.++.
T Consensus 42 ~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~ 85 (138)
T 3c3m_A 42 ALNAT--PPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTA 85 (138)
T ss_dssp HHHHS--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEES
T ss_pred HHhcc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEEC
Confidence 34444 8999999986653 44444443 477777654
No 213
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=21.01 E-value=2.5e+02 Score=25.63 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=33.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEecCCCchh
Q 011608 7 HIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVVATDTST 48 (481)
Q Consensus 7 ~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 48 (481)
-|+++..++.|-..-...||..|+.. |.+|.++....+...
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D~~r~~ 147 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAADTFRAG 147 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCSCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcchh
Confidence 35566667889999999999999999 999999988765543
No 214
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=21.00 E-value=2.2e+02 Score=24.28 Aligned_cols=102 Identities=12% Similarity=0.069 Sum_probs=62.6
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCCcccccCCCCCCCCCCCCchhHHhhhcCCCccccccCchhhhhccccCCcee
Q 011608 282 MIEVAWGLELSQQRFIWVVRPPMDNDVSGSFFKVGDGSSDGTPDYLPDGFLTRNAKMGLVVPDWAPQVEILGHASVGGFL 361 (481)
Q Consensus 282 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~v~~~~pq~~lL~~~~~~~~I 361 (481)
-.++.+.++..+..++++.+.. .-+|+.+.+..+...+-+ |++ +.=
T Consensus 69 ~~~~~~~l~~~~~Dliv~a~y~---------------------~il~~~~l~~~~~~~iNi-----------HpS--LLP 114 (216)
T 2ywr_A 69 EERMALELKKKGVELVVLAGFM---------------------RILSHNFLKYFPNKVINI-----------HPS--LIP 114 (216)
T ss_dssp HHHHHHHHHHTTCCEEEESSCC---------------------SCCCHHHHTTSTTCEEEE-----------ESS--CTT
T ss_pred hHHHHHHHHhcCCCEEEEeCch---------------------hhCCHHHHhhccCCeEEE-----------cCC--cCc
Confidence 3567888888888888876432 456777665443321111 333 233
Q ss_pred eecCCchhHHHHHcCcceeecccc--cchhhhHHHHHHhhceeEeccccCCCCccCHHHHHHHHHH
Q 011608 362 SHCGWNSTLESIVNGVPLIVWPLY--AEQKMNATMLAEELGVAVRPNEMPTENLVKREEIEMMVRR 425 (481)
Q Consensus 362 ~HgG~~s~~eal~~GvP~v~~P~~--~DQ~~na~~v~~~~G~g~~~~~~~~~~~~~~~~l~~al~~ 425 (481)
..-|...+..|+.+|....++-++ .+..+.+.-+. + .-+.+. ..-|.++|.+.+.+
T Consensus 115 ~yrG~~pi~~ai~~G~~~tGvTvh~v~~~~D~G~Ii~-q--~~~~i~-----~~dt~~~L~~rl~~ 172 (216)
T 2ywr_A 115 AFQGLHAQKQAVEFGVKFSGCTVHIVDESVDAGPVIV-Q--AVVPVL-----PEDDENTLADRILK 172 (216)
T ss_dssp TTCSTTHHHHHHHHTCSEEEEEEEECCSSSSCSCEEE-E--EEEECC-----TTCCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCCeEEEEEEEEcccCCCCCEEE-E--EEEEcC-----CCCCHHHHHHHHHH
Confidence 345899999999999998888765 34445554442 2 223333 44577888777654
No 215
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=20.97 E-value=3.7e+02 Score=26.69 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.1
Q ss_pred CCceeeecCC------chhHHHHHcCcceeecc
Q 011608 357 VGGFLSHCGW------NSTLESIVNGVPLIVWP 383 (481)
Q Consensus 357 ~~~~I~HgG~------~s~~eal~~GvP~v~~P 383 (481)
.+++++|.|- +.+.||.+.++|+|++-
T Consensus 74 p~v~~~TsGpG~~N~~~~l~~A~~~~vPll~it 106 (566)
T 1ozh_A 74 AGVALVTSGPGCSNLITGMATANSEGDPVVALG 106 (566)
T ss_dssp CEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEccChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4478999886 68899999999999974
No 216
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=20.96 E-value=94 Score=28.55 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEec
Q 011608 3 TTKTHIALLASPGMGHFIPVLELGKRFATQNDFQVTIFVV 42 (481)
Q Consensus 3 ~~~~~vvl~~~p~~GHi~P~l~La~~L~~r~Gh~Vt~~~~ 42 (481)
++.+||.|+-.+..| +-.+|+.|.++ ||+|+..=.
T Consensus 2 ~~~~~i~~iGiGg~G----ms~~A~~L~~~-G~~V~~~D~ 36 (326)
T 3eag_A 2 NAMKHIHIIGIGGTF----MGGLAAIAKEA-GFEVSGCDA 36 (326)
T ss_dssp -CCCEEEEESCCSHH----HHHHHHHHHHT-TCEEEEEES
T ss_pred CCCcEEEEEEECHHH----HHHHHHHHHhC-CCEEEEEcC
Confidence 345789999998887 44699999999 999998644
No 217
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=20.40 E-value=1e+02 Score=26.91 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=24.0
Q ss_pred HHHhhcCCCCcEEEEcCCCc--hHHHHHHHhCCceEEEe
Q 011608 99 SSISTLKPRPTALFADLFGT--EAFQIADEFEMLKYVYI 135 (481)
Q Consensus 99 ~~l~~~~~~~D~VI~D~~~~--~~~~~A~~~giP~v~~~ 135 (481)
+.|..+ +||+||...... ....--++.|+|++.+.
T Consensus 53 E~i~~l--~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (255)
T 3md9_A 53 EGILAM--KPTMLLVSELAQPSLVLTQIASSGVNVVTVP 89 (255)
T ss_dssp HHHHTT--CCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred HHHHcc--CCCEEEEcCCcCchhHHHHHHHcCCcEEEeC
Confidence 345556 999999876553 23344567899999864
No 218
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=20.26 E-value=3.6e+02 Score=24.71 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=38.3
Q ss_pred ccCchhhhhccccCCceeeecCC----chhHHHHHcCcceee-ccccc--chhhhHHHHHHhhceeEecc
Q 011608 344 DWAPQVEILGHASVGGFLSHCGW----NSTLESIVNGVPLIV-WPLYA--EQKMNATMLAEELGVAVRPN 406 (481)
Q Consensus 344 ~~~pq~~lL~~~~~~~~I~HgG~----~s~~eal~~GvP~v~-~P~~~--DQ~~na~~v~~~~G~g~~~~ 406 (481)
.+-...++|..+++++++--.-. .-+.+|+.+|+++++ -|+.. ++-......+++.|+-+.+.
T Consensus 63 ~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~ 132 (354)
T 3q2i_A 63 GHASLTDMLAQTDADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVV 132 (354)
T ss_dssp EESCHHHHHHHCCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred eeCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEE
Confidence 45567888876666566543322 246778999999887 47653 33333333346667766554
No 219
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=20.05 E-value=1.6e+02 Score=22.10 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=23.1
Q ss_pred HHhhcCCCCcEEEEcCCCc---hHHHHHHH----hCCceEEEech
Q 011608 100 SISTLKPRPTALFADLFGT---EAFQIADE----FEMLKYVYIAS 137 (481)
Q Consensus 100 ~l~~~~~~~D~VI~D~~~~---~~~~~A~~----~giP~v~~~~~ 137 (481)
.+++. +||+||.|.... .+..+.+. .++|++.++..
T Consensus 49 ~~~~~--~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 49 CAPDL--RPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp HHHHH--CCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECC
T ss_pred HHHhC--CCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecC
Confidence 33444 899999997653 34444433 47888887654
Done!