Query 011609
Match_columns 481
No_of_seqs 260 out of 1887
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 2.9E-55 6.3E-60 431.0 54.0 430 36-470 12-452 (455)
2 PRK10189 MATE family multidrug 100.0 3.2E-51 6.9E-56 406.3 56.0 425 39-467 27-468 (478)
3 PRK00187 multidrug efflux prot 100.0 1.2E-49 2.5E-54 395.3 55.7 419 37-459 6-442 (464)
4 PRK10367 DNA-damage-inducible 100.0 8E-48 1.7E-52 378.5 53.6 417 37-465 5-434 (441)
5 PRK01766 multidrug efflux prot 100.0 1.9E-47 4.2E-52 380.8 55.8 428 34-465 5-446 (456)
6 PRK09575 vmrA multidrug efflux 100.0 3E-47 6.5E-52 377.5 52.6 420 37-464 8-438 (453)
7 KOG1347 Uncharacterized membra 100.0 2.1E-37 4.5E-42 301.7 36.1 442 37-480 24-471 (473)
8 TIGR00797 matE putative efflux 100.0 6.5E-36 1.4E-40 287.4 43.5 337 49-388 1-341 (342)
9 TIGR01695 mviN integral membra 100.0 5.2E-35 1.1E-39 295.9 51.1 407 43-461 2-428 (502)
10 TIGR02900 spore_V_B stage V sp 100.0 1.6E-34 3.5E-39 291.4 47.9 408 44-461 2-434 (488)
11 PRK15099 O-antigen translocase 100.0 4.3E-33 9.3E-38 274.4 46.5 398 43-460 3-411 (416)
12 PF03023 MVIN: MviN-like prote 100.0 3.5E-28 7.5E-33 239.7 49.5 380 71-461 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 5E-27 1.1E-31 227.0 50.2 413 41-461 7-437 (518)
14 PRK10459 colanic acid exporter 100.0 1.9E-25 4.1E-30 225.2 47.1 391 41-460 5-404 (492)
15 COG2244 RfbX Membrane protein 99.9 1.8E-23 3.9E-28 210.3 41.0 385 39-445 4-396 (480)
16 PRK00187 multidrug efflux prot 99.9 9.7E-21 2.1E-25 188.4 26.7 204 36-240 231-441 (464)
17 COG0534 NorM Na+-driven multid 99.9 1.1E-19 2.3E-24 179.4 25.8 209 34-244 234-444 (455)
18 PRK10189 MATE family multidrug 99.9 2.7E-19 5.9E-24 178.1 28.8 211 36-247 254-466 (478)
19 PRK01766 multidrug efflux prot 99.9 1.2E-19 2.7E-24 181.0 25.4 206 36-242 234-441 (456)
20 PRK10367 DNA-damage-inducible 99.8 1.3E-18 2.9E-23 171.5 27.3 200 258-460 6-211 (441)
21 PRK09575 vmrA multidrug efflux 99.8 1.7E-18 3.7E-23 172.0 26.6 205 36-243 229-436 (453)
22 TIGR01695 mviN integral membra 99.8 8.2E-17 1.8E-21 163.1 33.0 205 37-243 219-428 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 4.6E-16 1E-20 144.5 34.1 271 43-329 1-272 (273)
24 PF03023 MVIN: MviN-like prote 99.7 7.6E-15 1.6E-19 145.1 30.7 204 38-243 195-403 (451)
25 TIGR02900 spore_V_B stage V sp 99.7 1.1E-15 2.4E-20 154.3 24.7 202 36-242 220-433 (488)
26 TIGR00797 matE putative efflux 99.7 3.3E-15 7.2E-20 143.6 23.9 188 269-460 1-196 (342)
27 PF01554 MatE: MatE; InterPro 99.7 8.2E-18 1.8E-22 143.2 5.0 160 49-209 1-162 (162)
28 PRK10459 colanic acid exporter 99.7 5.7E-13 1.2E-17 134.6 35.1 200 37-242 203-404 (492)
29 COG0728 MviN Uncharacterized m 99.7 7.2E-13 1.6E-17 129.1 34.0 204 38-243 229-437 (518)
30 PF01554 MatE: MatE; InterPro 99.7 3.2E-16 7E-21 133.3 8.6 156 269-426 1-162 (162)
31 PRK15099 O-antigen translocase 99.6 9E-14 2E-18 137.2 26.4 200 36-242 210-411 (416)
32 PF13440 Polysacc_synt_3: Poly 99.6 2.3E-12 4.9E-17 118.1 32.8 247 59-328 2-250 (251)
33 COG2244 RfbX Membrane protein 99.6 1.4E-12 2.9E-17 131.5 25.7 185 36-225 208-394 (480)
34 PF04506 Rft-1: Rft protein; 99.3 3.1E-08 6.7E-13 99.0 32.5 414 44-461 4-470 (549)
35 KOG2864 Nuclear division RFT1 99.1 3.6E-06 7.9E-11 78.9 34.3 405 40-460 7-448 (530)
36 KOG1347 Uncharacterized membra 99.0 2E-08 4.3E-13 99.0 19.5 200 257-461 24-230 (473)
37 PF07260 ANKH: Progressive ank 99.0 2E-06 4.3E-11 77.2 29.2 309 39-361 9-343 (345)
38 PF04506 Rft-1: Rft protein; 98.6 8.2E-06 1.8E-10 81.9 21.7 203 40-243 252-470 (549)
39 PF14667 Polysacc_synt_C: Poly 98.5 2.7E-05 5.9E-10 64.5 17.9 79 163-243 2-80 (146)
40 KOG2864 Nuclear division RFT1 98.0 0.0046 1E-07 58.7 23.3 201 41-243 239-449 (530)
41 PF01943 Polysacc_synt: Polysa 97.8 0.0062 1.3E-07 56.1 22.0 186 265-461 3-191 (273)
42 COG4267 Predicted membrane pro 97.8 0.026 5.6E-07 52.4 36.4 340 88-450 71-435 (467)
43 PF07260 ANKH: Progressive ank 97.5 0.059 1.3E-06 49.2 21.4 138 258-402 8-149 (345)
44 PF14667 Polysacc_synt_C: Poly 97.5 0.00085 1.9E-08 55.5 9.1 72 386-461 3-80 (146)
45 PF13440 Polysacc_synt_3: Poly 97.2 0.18 4E-06 45.6 22.0 158 284-459 7-171 (251)
46 TIGR00822 EII-Sor PTS system, 89.9 15 0.00032 33.4 15.5 37 306-342 104-140 (265)
47 PRK09757 PTS system N-acetylga 83.1 37 0.0008 31.0 16.9 38 306-343 105-142 (267)
48 PF05975 EcsB: Bacterial ABC t 74.1 91 0.002 30.4 16.6 37 334-370 89-125 (386)
49 PRK01637 hypothetical protein; 65.1 1.2E+02 0.0026 28.2 17.6 10 325-334 115-124 (286)
50 PF04505 Dispanin: Interferon- 54.6 78 0.0017 22.9 6.6 40 316-355 34-73 (82)
51 PF04995 CcmD: Heme exporter p 43.7 78 0.0017 19.9 4.6 32 438-470 7-39 (46)
52 KOG2532 Permease of the major 39.9 3.9E+02 0.0086 26.8 11.3 77 383-461 135-219 (466)
53 PTZ00370 STEVOR; Provisional 38.2 55 0.0012 29.9 4.4 36 431-470 255-293 (296)
54 PF11457 DUF3021: Protein of u 37.7 2.1E+02 0.0045 22.8 15.8 13 461-473 123-135 (136)
55 COG2211 MelB Na+/melibiose sym 37.5 4.4E+02 0.0096 26.5 32.1 34 39-72 10-44 (467)
56 TIGR03141 cytochro_ccmD heme e 37.3 98 0.0021 19.4 4.3 12 438-450 8-19 (45)
57 TIGR00383 corA magnesium Mg(2+ 35.7 1.7E+02 0.0036 27.5 7.7 18 446-463 300-317 (318)
58 PRK09546 zntB zinc transporter 35.3 1.6E+02 0.0034 27.9 7.5 44 418-463 272-323 (324)
59 PF03904 DUF334: Domain of unk 33.9 1.8E+02 0.004 25.6 6.7 39 113-151 142-180 (230)
60 PF06963 FPN1: Ferroportin1 (F 32.2 5.2E+02 0.011 25.7 18.2 52 295-356 37-88 (432)
61 PRK06814 acylglycerophosphoeth 30.7 8.5E+02 0.018 27.7 38.8 30 175-204 129-158 (1140)
62 PRK11085 magnesium/nickel/coba 30.1 2.8E+02 0.0061 26.2 8.0 65 395-463 242-315 (316)
63 PF01102 Glycophorin_A: Glycop 29.9 75 0.0016 25.1 3.5 7 437-443 68-74 (122)
64 PF14184 YrvL: Regulatory prot 29.4 3E+02 0.0065 22.1 10.4 84 360-443 21-108 (132)
65 COG4267 Predicted membrane pro 28.9 5.5E+02 0.012 25.0 20.6 134 313-459 75-209 (467)
66 PF05313 Pox_P21: Poxvirus P21 28.3 3.1E+02 0.0066 23.3 6.8 27 217-243 135-161 (189)
67 PF03609 EII-Sor: PTS system s 27.1 4.6E+02 0.01 23.5 16.6 68 304-371 102-170 (238)
68 COG0598 CorA Mg2+ and Co2+ tra 26.6 2.1E+02 0.0046 27.0 6.7 54 406-463 260-321 (322)
69 PF14184 YrvL: Regulatory prot 25.9 3.5E+02 0.0076 21.7 13.2 100 123-224 6-106 (132)
70 PF04142 Nuc_sug_transp: Nucle 25.2 5.1E+02 0.011 23.3 16.1 43 256-307 10-52 (244)
71 COG0798 ACR3 Arsenite efflux p 24.4 6.2E+02 0.013 24.1 25.4 39 175-213 66-104 (342)
72 PRK10739 putative antibiotic t 22.9 5E+02 0.011 22.5 9.1 58 323-384 21-78 (197)
73 TIGR01478 STEVOR variant surfa 22.4 75 0.0016 29.0 2.5 39 424-466 252-293 (295)
74 KOG2234 Predicted UDP-galactos 22.2 6.9E+02 0.015 23.8 18.7 38 251-292 80-117 (345)
75 PRK03612 spermidine synthase; 21.1 9E+02 0.019 24.7 21.8 28 50-77 23-51 (521)
76 PF14248 DUF4345: Domain of un 20.8 4.2E+02 0.0091 20.8 13.3 117 340-460 2-123 (124)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=2.9e-55 Score=431.02 Aligned_cols=430 Identities=23% Similarity=0.343 Sum_probs=404.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccc
Q 011609 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (481)
Q Consensus 36 ~~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 115 (481)
.++..|+++++++|+++++++..+++.+|+.++||+|++++++.++++++..+ ...+..|++.+..+.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 45689999999999999999999999999999999999999999999999998 88899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHH
Q 011609 116 MLGVYMQRSWIVLFVCCVLLLP-LYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (481)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (481)
++++..+++++++++.+++..+ .+.+.++++.+++.++|+.+.+.+|+++..++.|+..+...+.+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 9999999999999999977765 589999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-hc-CCcchhHHHHHHHHHHHHHHHHHHHhcCCc--CCcCCCCCHHhhhhHHHHHHHHHHH
Q 011609 195 VSLVALLVHIFVSWLFVNR-MQ-LGVIGTAATLNFSWWILVFGLFGYVSCGGC--PLTWTGFTLEAFSGLWQFVKLSAAS 270 (481)
Q Consensus 195 ~~~~~~~~~i~l~~~li~~-~~-~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 270 (481)
.++++.++|+++|++|++. ++ +|+.|+++||++++.+.+++..+++++++. .....+..+.+++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999997 57 999999999999999999999999988752 3332333344557899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 011609 271 GVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSV 350 (481)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~ 350 (481)
+++++.+...+...+.+++++| ++++|+|+++.++.++.++++.+++++..|.+++++|+||+|++++..+.+..++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHHhhHHHH
Q 011609 351 IIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYLIGVPLG 424 (481)
Q Consensus 351 ~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~i~~~ 424 (481)
.+++..+++++++++++.++|++|+++.+.+..++++..+..++++.+.+.. ||+|.++..++++.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999888777 9999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Q 011609 425 CLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEAETA 470 (481)
Q Consensus 425 ~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 470 (481)
+++..+. +|..|+|+++. .++.++.++..+++++.+|+++..+.
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFP-LSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred HHHhhhc-ccchHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 9999444 99999999999 99999999999999999998776554
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=3.2e-51 Score=406.31 Aligned_cols=425 Identities=15% Similarity=0.172 Sum_probs=389.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccchHH
Q 011609 39 ESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLG 118 (481)
Q Consensus 39 ~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~ 118 (481)
..|+++++++|.++++++..+.+.+|+.+++++|++++++++++.++..+ ...+..|++.+..+.++|++|++|+++++
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~-~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~ 105 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMV-IMAFFAAIDLGTTVVVAFSLGKRDRRRAR 105 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 48999999999999999999999999999999999999999999999887 78899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHH
Q 011609 119 VYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLG--QPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV 195 (481)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (481)
+..++++.++..++++.+++ +.+.++++.++. .|+|+.+.+..|+++..++.++..+....++++|+.||++.++..
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i 185 (478)
T PRK10189 106 AAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLI 185 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHH
Confidence 99999999999998877755 778899999884 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh----cCCcchhHHHHHHHHHHHHHHHHHHHhcC-C--cCCcCCC-CCHHhhhhHHHHHHHH
Q 011609 196 SLVALLVHIFVSWLFVNRM----QLGVIGTAATLNFSWWILVFGLFGYVSCG-G--CPLTWTG-FTLEAFSGLWQFVKLS 267 (481)
Q Consensus 196 ~~~~~~~~i~l~~~li~~~----~~g~~g~a~a~~i~~~i~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~~~~ 267 (481)
+++..++|+++++++++.. ++|+.|+++|+.+++.+..++..+++.++ + .+.++++ +.+.+++.+|++++.|
T Consensus 186 ~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG 265 (478)
T PRK10189 186 NGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIG 265 (478)
T ss_pred HHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHh
Confidence 9999999999999999753 68999999999999999988877666543 2 1222222 1122457799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 011609 268 AASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVV 347 (481)
Q Consensus 268 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~ 347 (481)
.|.++..........+.+.+++++| +.++|+|+++.++.++.+++..+++++..|.+++++|++|+|++++..+.+.+
T Consensus 266 ~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~ 343 (478)
T PRK10189 266 IPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFW 343 (478)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999888888888889988 77999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHHhhH
Q 011609 348 TSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYLIGV 421 (481)
Q Consensus 348 ~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~i 421 (481)
++.++++..+++++++++++.++|++|+++.+.+..++++.++..++++++.+.. ||++.++++++.+.|++.+
T Consensus 344 ~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~i 423 (478)
T PRK10189 344 LSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRV 423 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998877765 9999999999999999999
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Q 011609 422 PLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEA 467 (481)
Q Consensus 422 ~~~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~ 467 (481)
|+.+++....++|..|+|++.. +++.+..++.++++++.+|+++.
T Consensus 424 p~~~ll~~~~~~g~~Gvw~~~~-~~~~~~~~~~~~r~~~~~W~~~~ 468 (478)
T PRK10189 424 VAGYILGIMLGFGVVGVWMGMF-LDWAVRGVLFYWRMVSGRWLWKY 468 (478)
T ss_pred HHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHHHHHcCccccCC
Confidence 9999998777899999999999 99999999999999999999843
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.2e-49 Score=395.25 Aligned_cols=419 Identities=20% Similarity=0.254 Sum_probs=379.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccch
Q 011609 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (481)
Q Consensus 37 ~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 116 (481)
++..|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++.++ ...+..|++.+..+.++|++|++|+++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~-~~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSF-VSIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 4578999999999999999999999999999999999999999999999888 677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHHH
Q 011609 117 LGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVS 196 (481)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (481)
+++..++++.+..+++++..++..+.++++.+++.|+|+.+.+.+|+++..++.++..+....++++|+.|+++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999888777665678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh----cCCcchhHHHHHHHHHHHHHHHHHHHhcCCc--CCcC-CCCCHHhhhhHHHHHHHHHH
Q 011609 197 LVALLVHIFVSWLFVNRM----QLGVIGTAATLNFSWWILVFGLFGYVSCGGC--PLTW-TGFTLEAFSGLWQFVKLSAA 269 (481)
Q Consensus 197 ~~~~~~~i~l~~~li~~~----~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~p 269 (481)
+++.++|++++++|++.+ ++|+.|+++|+.+++.+..+...+++++++. +.++ ++..+.+++..|++++.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999753 4799999999999988887776666655421 1221 11222345668999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 011609 270 SGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTS 349 (481)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~ 349 (481)
.+++++.+...+.+++.+++++| ++++|+++++.++..+.++++.+++++..+.+++++|+||+|++++..+.+..++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHhhhhcCC--cH---HHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHH
Q 011609 350 VIIGLFFWLLIMIYHNELALIFSS--SE---AVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYL 418 (481)
Q Consensus 350 ~~~~~~~~~~l~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~ 418 (481)
..++++.+++++++++++.++|++ |+ ++.+.+..++++.+++.++++++.... |+++.+++.++++.|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999964 43 678888999999999999998877765 9999999999999999
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011609 419 IGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITI 459 (481)
Q Consensus 419 ~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~ 459 (481)
+++|+.|++.+++++|+.|+|+++. +++.+..+....+++
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~~~-i~~~~~~~~~~~~~~ 442 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWGLA-LGLACAAVALTLAFE 442 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999888899999999999 999999887766663
No 4
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=8e-48 Score=378.52 Aligned_cols=417 Identities=16% Similarity=0.145 Sum_probs=364.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccc
Q 011609 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHL-GDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (481)
Q Consensus 37 ~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 115 (481)
++..|+++++++|.++++++..+++.+|+.+++++ |++++++++++.++..+ ...+..+++.+..+.++|++|+||++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSF-LFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 44678899999999999999999999999999998 77899999999999988 77788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHH
Q 011609 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (481)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (481)
++++..++++.++++++++..++ ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+..++++++|+.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999998887755 77889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcCC-cC-CcCCCCCHHhhhhHHHHHHHHHHHHH
Q 011609 195 VSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGG-CP-LTWTGFTLEAFSGLWQFVKLSAASGV 272 (481)
Q Consensus 195 ~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~p~~~ 272 (481)
.++++.++|+++++++++.+++|+.|+++|+.+++.+..++..+++++++ .+ .+.+.++.+.++..|++++.|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 99999999999999999988899999999999999999888777776532 11 11111221112468999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q 011609 273 MLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVII 352 (481)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 352 (481)
++..+...+.+.+.+++++| +.++|+|+++.++.++.++++.+++++.+|.+++++|+||+|++++..+.+.+++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 6799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhh----hhhhc--cc---chhhHHHHHHHHHHhhHHH
Q 011609 353 GLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSV----QPILS--GW---QSYVAYINLGCYYLIGVPL 423 (481)
Q Consensus 353 ~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~--g~---~~~~~~~~~~~~~~~~i~~ 423 (481)
+.+.+++++.+++++..+|++|+++.+....++++..+..+..+. ..++. +| +|.++.++.++.|+..+
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~-- 399 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL-- 399 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999887654222111 22233 54 99999999988764222
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcChHH
Q 011609 424 GCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDK 465 (481)
Q Consensus 424 ~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~~~~ 465 (481)
.. +.+|..|+|++.. +++.++.++..++++++ |++
T Consensus 400 ---~~--~~~g~~Gvw~a~~-~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 400 ---TL--PWLGNHGLWLALT-VFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred ---HH--HHcCchHHHHHHH-HHHHHHHHHHHHHHHHH-Hhc
Confidence 22 4579999999999 99999999888776654 754
No 5
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=1.9e-47 Score=380.78 Aligned_cols=428 Identities=18% Similarity=0.345 Sum_probs=388.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccc
Q 011609 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (481)
Q Consensus 34 ~~~~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~ 113 (481)
++.++.+|++++.++|.+++++...+.+.+|+.+++++|++++++++++.++... ...+..|++.+..+.++|++|++|
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3456789999999999999999999999999999999999999999999988776 677888999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHH
Q 011609 114 YYMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (481)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (481)
+++.++..++++.+.+..+++++++ +.+.++++.+++.|+++.+.+..|+++.+++.++..+...+++++|+.|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999998877755 677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----hcCCcchhHHHHHHHHHHHHHHHHHHHhcCCcCC---cCCCCCHHhhhhHHHHHH
Q 011609 193 AWVSLVALLVHIFVSWLFVNR----MQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPL---TWTGFTLEAFSGLWQFVK 265 (481)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~----~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 265 (481)
++.+.++.++|+++++++++. .++|+.|+++|+.+++.+..++..++.++++... .+.++.+.+++..|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 999999999999999999863 2479999999999999999998887776642211 112222234567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 011609 266 LSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVS 345 (481)
Q Consensus 266 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~ 345 (481)
.++|..+++..+...+.+++.+++++| +.++|+++++.++.++..+++.+++.+..+.+++++|+||++++++..+.+
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~ 321 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIG 321 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999998 678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHHh
Q 011609 346 VVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYLI 419 (481)
Q Consensus 346 ~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~ 419 (481)
..++..++++.+++++.+++++.++|++|+++.+....++++..+..++++++.... ||++.++..++++.|++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 401 (456)
T PRK01766 322 LAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVL 401 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988877766 99999999999999999
Q ss_pred hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcChHH
Q 011609 420 GVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDK 465 (481)
Q Consensus 420 ~i~~~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~~~~ 465 (481)
.+|+.+++...+++|..|+|+++. +++.+..++.++++++.+|+.
T Consensus 402 ~i~~~~~l~~~~~~G~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 402 GLPLGYILALTDPMGPFGFWIGLI-IGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHhccCCCceehHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998777899999999999 999999998888887766554
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=3e-47 Score=377.48 Aligned_cols=420 Identities=18% Similarity=0.215 Sum_probs=379.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccc
Q 011609 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHL-GDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (481)
Q Consensus 37 ~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 115 (481)
++..|++++.++|.+++++...+++.+|+.+++++ |++++++++++.++..+ ...+..+++.+..+.++|++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~-~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGI-ILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 34778999999999999999999999999999995 99999999999999988 67788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHH
Q 011609 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (481)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (481)
+.++..++++.++.+++++..++ +.+.++++.+++.|+++.+.+.+|+++..++.++..+.....+.+|+.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999877755 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcCCcCCcC--CCCCHHhhhhHHHHHHHHHHHHH
Q 011609 195 VSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTW--TGFTLEAFSGLWQFVKLSAASGV 272 (481)
Q Consensus 195 ~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~ 272 (481)
.++.+.++|+++++++++.+++|+.|+++|+.+++.+..++..+++++++...++ +.+ +.+++..|++++.|.|.++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~ig~P~~~ 245 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKEL-RFNWSLAPKIVLLGSSSFF 245 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccC-CcCHHHHHHHHHhChhHHH
Confidence 9999999999999999988889999999999999999999888777655332222 222 2234668999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q 011609 273 MLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVII 352 (481)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 352 (481)
++....+...+.+.+.+++|+ +.++|+++++.++..+.+++..+++++..|.+++++|+||+|++++..+.++++++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~ 324 (453)
T PRK09575 246 MYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLA 324 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999999999998888888884 5689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHhhhhcCC-cHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHHhhHHHHH
Q 011609 353 GLFFWLLIMIYHNELALIFSS-SEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYLIGVPLGC 425 (481)
Q Consensus 353 ~~~~~~~l~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~i~~~~ 425 (481)
+++.+++++.+++++.++|++ |+++.+.+..++++..++.++++++.... |+++.++..+... +++++|+.+
T Consensus 325 ~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ 403 (453)
T PRK09575 325 GIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLF 403 (453)
T ss_pred HHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHH
Confidence 999999999999999999995 78899999999999999999998876665 9999999999876 578999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcChH
Q 011609 426 LMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWD 464 (481)
Q Consensus 426 ~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~~~ 464 (481)
++. +.+|+.|+|+++. +++++..++...++++ +|+
T Consensus 404 ll~--~~~G~~Gvw~a~~-~~~~~~~~~~~~~~~~-~~~ 438 (453)
T PRK09575 404 ILP--KWLGVDGVWLAMP-LSNIALSLVVAPMLWR-DVK 438 (453)
T ss_pred HHH--HHHCcchHhhHHH-HHHHHHHHHHHHHHHH-HHH
Confidence 987 5589999999999 9999988877766654 444
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=2.1e-37 Score=301.71 Aligned_cols=442 Identities=43% Similarity=0.722 Sum_probs=419.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccch
Q 011609 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (481)
Q Consensus 37 ~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 116 (481)
..+.|++++++.|+++..+...+.+.+++.++||+|+.++++.+++++..+.+...+..|+..+..+.++|++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 67889999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHHH
Q 011609 117 LGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVS 196 (481)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (481)
...+.+++.......+++..+++.+.++++..++.|+++...+..|.+.+.+..+.+........++|++++.....+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCCCHHhhhhHHHHHHHHHHHHHHHHH
Q 011609 197 LVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCL 276 (481)
Q Consensus 197 ~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 276 (481)
....++++.+++++++..++|..|++++..+++.+.......+.........|..+..+ ++.++++++.++|..++...
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~micl 262 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMICL 262 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeHH
Confidence 99999999999999999999999999999999999999988887765556666666666 78899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 011609 277 ENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFF 356 (481)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (481)
+++.+.+..+..+.+++...++++.++..++....++++.+++.+...++++.+|+++++++|...+.....++..+...
T Consensus 263 E~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~ 342 (473)
T KOG1347|consen 263 EWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASL 342 (473)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHHhhHHHHHHHHHH
Q 011609 357 WLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYLIGVPLGCLMGWV 430 (481)
Q Consensus 357 ~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~i~~~~~l~~~ 430 (481)
+..++..++.+..+|++|+++.+...+..++++.+.++++.+.+.. |.++...++++.+.+++++|+..++.+.
T Consensus 343 ~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~ 422 (473)
T KOG1347|consen 343 GTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFF 422 (473)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEE
Confidence 9999999999999999999999999999999999999999988887 8899999999999999999999999988
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhhhhhccC
Q 011609 431 FHQGVMGIWAGMIFGGTAIQTLILAIITIRCDWDKEAETANTRVRKWAET 480 (481)
Q Consensus 431 ~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (481)
.++|..|.|.++. .+..+..........+.+|+++.++.++|..+++++
T Consensus 423 ~~~g~~glw~G~~-~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~ 471 (473)
T KOG1347|consen 423 TKFGVKGLWIGIL-LGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVL 471 (473)
T ss_pred EecCceEEEeehH-HHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccC
Confidence 8999999999999 998888888888888889999999999998877654
No 8
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=6.5e-36 Score=287.44 Aligned_cols=337 Identities=26% Similarity=0.473 Sum_probs=306.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccchHHHHHHHHHHHH
Q 011609 49 PAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVL 128 (481)
Q Consensus 49 p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 128 (481)
|.+++++...+...+|+.+++++|++++|+++.+.++..+ ...+..|++++..+.++++.|++|+|+.++..+..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMF-LFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH-HHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999998877 787899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHH
Q 011609 129 FVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVS 207 (481)
Q Consensus 129 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~ 207 (481)
...+++.+++ +.+.+++..+++.+++..+.+..+++++.+..++..+..+..+.+|+.||++.++..++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999888755 788999999888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hhc-CCcchhHHHHHHHHHHHHHHHHHHHhcC-CcCCcCCCCCHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011609 208 WLFVN-RMQ-LGVIGTAATLNFSWWILVFGLFGYVSCG-GCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRIL 284 (481)
Q Consensus 208 ~~li~-~~~-~g~~g~a~a~~i~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 284 (481)
+++++ .++ +|+.|+++++.+++++..++..++.+|+ +.+.++++..+.+++..|++++++.|..++++..++...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99887 567 7899999999999999998887777653 33333222222334678999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011609 285 ISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYH 364 (481)
Q Consensus 285 ~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (481)
+.+++.++ +.++++|+++.++.++...++.+++++..|.++++++++|.++.++..+++.++.+.++++.++++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCcHHHHHHHHHHHHHH
Q 011609 365 NELALIFSSSEAVLQAVNKLSILL 388 (481)
Q Consensus 365 ~~i~~l~~~~~~~~~~~~~~l~~~ 388 (481)
+++.++|++|++..+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999988888887764
No 9
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=5.2e-35 Score=295.91 Aligned_cols=407 Identities=14% Similarity=0.098 Sum_probs=338.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhHhcccccchHHH
Q 011609 43 LWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIEL-AAISIANNVIVGFDFGLL-LGMASALETLCGQAFGAKRYYMLGV 119 (481)
Q Consensus 43 l~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~-~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~s~~~g~~~~~~~~~ 119 (481)
+.|.+.-.++++++..+++++|..+++| +|++++ ++++.+.++...+..... .|++.+..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788999999999999999999999999 899999 899999999876333333 468888777776654322 56776
Q ss_pred HHHHHHHHHHHHH-HHHHH-HHHhhHHHHHHc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHH
Q 011609 120 YMQRSWIVLFVCC-VLLLP-LYLFASPVLKLL--GQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV 195 (481)
Q Consensus 120 ~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (481)
...++.......+ ++..+ .+.+.+++..++ +.+++..+.+..|++++.++.++..+..+.++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 7777666555444 44444 477888888877 4567777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcchhH--HHHHHHHHHHHHHHHHHHhcCCcCCcCCCCCHHhhhhHHHHHHHHHHHHHH
Q 011609 196 SLVALLVHIFVSWLFVNRMQLGVIGTA--ATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVM 273 (481)
Q Consensus 196 ~~~~~~~~i~l~~~li~~~~~g~~g~a--~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (481)
+++.++++++..+++ ..++|..|++ +++++++.+..++..++.+|++.+.+. +++ .+++..|++++++.|..++
T Consensus 160 ~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP-RFN-FRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC-cCC-CCChhHHHHHHHHHHHHHH
Confidence 999988776643333 3567999988 999999999888877766654322211 121 1235689999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q 011609 274 LCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMM-IPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVII 352 (481)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~-~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 352 (481)
+....+...+|+.+.+.++ +.++++|+.+.++.++... +..+++++..|.+++++|++|+++.++..+++.++...+
T Consensus 236 ~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01695 236 SSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLL 313 (502)
T ss_pred HHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877766 6688899999999998865 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHhhhhcCC----cHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHHhhHH
Q 011609 353 GLFFWLLIMIYHNELALIFSS----SEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYLIGVP 422 (481)
Q Consensus 353 ~~~~~~~l~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~i~ 422 (481)
++|.++++.++++++..+|.+ |++..+....++.+++++.++.+++.... ||+|.+++.+.... +++++
T Consensus 314 ~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~ 392 (502)
T TIGR01695 314 TIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNAL 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHH
Confidence 999999999999999999865 45667788899999999999888777665 99999999999986 88999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 011609 423 LGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRC 461 (481)
Q Consensus 423 ~~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~ 461 (481)
+++++. +.+|..|+|+++. +++.+..++..++.+|+
T Consensus 393 l~~~l~--~~~G~~G~~~a~~-i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 393 LSLLLI--FPLGLVGIALATS-AASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHH--HHHhhhHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 999988 7899999999999 99999988887777765
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=1.6e-34 Score=291.36 Aligned_cols=408 Identities=12% Similarity=0.115 Sum_probs=335.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccchHHHHHH
Q 011609 44 WYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQ 122 (481)
Q Consensus 44 ~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~ 122 (481)
.|.+.|.+++++...+.+++|+.+++| +|++++|+++.+.++..++......|++.+..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 477899999999999999999999999 7999999999999998884554567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHH
Q 011609 123 RSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALL 201 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 201 (481)
+++++.++.+++..++ +.+.+++...++.+++. ..++++..+..++..+....++.+|+.+|.+..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999988877755 66777777666666543 346788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-----hcCCcchhHHHHHHHHHHHHHHHHHHHhcCCc-CCc--CCCCCHHhhhhHHHHHHHHHHHHHH
Q 011609 202 VHIFVSWLFVNR-----MQLGVIGTAATLNFSWWILVFGLFGYVSCGGC-PLT--WTGFTLEAFSGLWQFVKLSAASGVM 273 (481)
Q Consensus 202 ~~i~l~~~li~~-----~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (481)
+++.++..++.. .+.++.|+++++.+++.+..++..++.+|++. +.+ +.+..+.+++..|++++++.|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 988776666542 13467888899999998888877666554321 111 1112233346789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc-----hH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHH
Q 011609 274 LCLENWYYRILISMTGNLQN-----AE---IAVDAL-SICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIV 344 (481)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~-----~~---~~~a~~-~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~ 344 (481)
++...+...+|+.++++... .. ...+.| +++.++.++...+..+++++..|.++++.|++|+++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988865421 01 233333 3566788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHH
Q 011609 345 SVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYL 418 (481)
Q Consensus 345 ~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~ 418 (481)
..++...+++|.++++..+++++..++.++++ +..+++++++..++.+++.... ||+|..++.++++. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999875543 4556777777777777666544 99999999999986 8
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 011609 419 IGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRC 461 (481)
Q Consensus 419 ~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~ 461 (481)
+++++++.+...+.+|..|+|+++. +++.+..++..++.+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~-i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFI-ITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999988876557899999999999 99999999988888764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=4.3e-33 Score=274.37 Aligned_cols=398 Identities=11% Similarity=0.009 Sum_probs=324.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccchHHHHH
Q 011609 43 LWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYM 121 (481)
Q Consensus 43 l~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~ 121 (481)
+.|.+.+...++++..+.+++...+++| +|++++|.++..+++...+......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788899999999999999999999999 79999999999999988755555888888888889988 67888899999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHHHHHHH
Q 011609 122 QRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVAL 200 (481)
Q Consensus 122 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 200 (481)
++++.+.+..+++++++ +.+.+|+...+..+++. ..+..+..+..++..+.....+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887755 78888998877766642 24456666666677788889999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcCCc-CCcCCCCCHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 011609 201 LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGC-PLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENW 279 (481)
Q Consensus 201 ~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 279 (481)
++|+.+ +++.... .|+.|+++|+++++.+..+...++++|++. +.+..+++ .+++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 4444322 399999999999999988777777665422 11111222 2346689999999999999999999
Q ss_pred HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 011609 280 YYRILISMTG-NLQNAEIAVDALSICMTINGW-EMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFW 357 (481)
Q Consensus 280 ~~~~~~~~~~-~~~~~~~~~a~~~~~~~l~~~-~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (481)
....++.+++ .+| ++++|.|+++.|+.+. ...+..+++++.+|.++++ +|.++.++..++..+....++++.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998886 666 7899999999999885 4789999999999999995 6788999999999999999999999
Q ss_pred HHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHHhhHHHHHHHHHHh
Q 011609 358 LLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYLIGVPLGCLMGWVF 431 (481)
Q Consensus 358 ~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 431 (481)
+++.+++++++.++.+|+ .+....++++.+++.++...+..+. ++++.....++.. .++.+|+++++. +
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li--~ 383 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLI--P 383 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--H
Confidence 999999999999998776 3445666677666666654444332 6666666666555 589999999998 8
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011609 432 HQGVMGIWAGMIFGGTAIQTLILAIITIR 460 (481)
Q Consensus 432 ~~g~~G~~~a~~~~~~~i~~~~~~~~~~~ 460 (481)
.+|..|++++.. +++.+...+......+
T Consensus 384 ~~G~~G~a~a~~-is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 384 LHGALGAAQAYM-ATYIVYFSLCCGVFLL 411 (416)
T ss_pred HhhhHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 899999999999 9999998877755543
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=3.5e-28 Score=239.65 Aligned_cols=380 Identities=16% Similarity=0.140 Sum_probs=328.2
Q ss_pred cChh-HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhHhcccccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 011609 71 LGDI-ELAAISIANNVIVGFDFGLL-LGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLK 147 (481)
Q Consensus 71 lg~~-~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 147 (481)
+|.. +..+|..+.++.+++...+. .++.++..|..++.. ++++++.++..++...+....+++++++ ++++++++.
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5654 56689999999998454454 458999999999998 7888899999999888887777777655 888999998
Q ss_pred Hc--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHhhhcCC---cchhH
Q 011609 148 LL--GQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLG---VIGTA 222 (481)
Q Consensus 148 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g---~~g~a 222 (481)
++ +.+++..+.+...++++.+..++..+..++.+++|+++|...+....++.++..++...++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 87 557888999999999999999999999999999999999999999999988776554433333 346 88899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcCCcCCCCCHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 011609 223 ATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALS 302 (481)
Q Consensus 223 ~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 302 (481)
+|+.++.++..++.....+|...+.+. +++.+ .+..|++++...|..+.+...++...+++.+.+.++ +.++++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l~ 237 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRP-KFDWR-DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSALN 237 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccc-cCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHHH
Confidence 999999999999888887776444332 12222 245889999999999999999999999999999988 56888999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcC----CcHHH
Q 011609 303 ICMTINGWEM-MIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFS----SSEAV 377 (481)
Q Consensus 303 ~~~~l~~~~~-~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~----~~~~~ 377 (481)
-+.++.+++. .+..+++++..|.+++...++|.++.++..++.++....+.+|.+++++.+++++++++. .|.+.
T Consensus 238 YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~ 317 (451)
T PF03023_consen 238 YAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAED 317 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHH
Confidence 9999999987 667899999999999999999999999999999999999999999999999999999863 35666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 011609 378 LQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQT 451 (481)
Q Consensus 378 ~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~i~~ 451 (481)
.+.....+.+++++.++.+++.++. ||+|.++..++++. ++++.+++++. +.+|..|+++++. ++.++..
T Consensus 318 ~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~--~~~g~~Glala~s-l~~~i~~ 393 (451)
T PF03023_consen 318 TQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLV--PFFGVAGLALATS-LSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHH
Confidence 8889999999999999999988777 99999999999996 89999998888 8999999999999 9999999
Q ss_pred HHHHHHHHhc
Q 011609 452 LILAIITIRC 461 (481)
Q Consensus 452 ~~~~~~~~~~ 461 (481)
++.+..++|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9998888877
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.98 E-value=5e-27 Score=226.98 Aligned_cols=413 Identities=12% Similarity=0.059 Sum_probs=346.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCh-hHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHhHhcccccchH
Q 011609 41 KKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGD-IELAAISIANNVIVGFDFGLLLG-MASALETLCGQAFGAKRYYML 117 (481)
Q Consensus 41 ~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~-~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~s~~~g~~~~~~~ 117 (481)
+.++|.++-....++++.+.+++...+++. +|+ ....++.++.++.+.+-..+..| ++++..|...++..+++.++.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 457888888899999999999998888888 788 46679999999999866666655 799999999999887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHc-CC--CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHH
Q 011609 118 GVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLL-GQ--PDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (481)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (481)
++..+........+.++.+++ .++.+.+.... +. |++....+....+++.+..++.++..+..+++++.++...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 777776665666666666654 67777777444 33 233333688888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCCCHHhhhhHHHHHHHHHHHHHH
Q 011609 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVM 273 (481)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 273 (481)
+..+..++.-+.....+.........+.++|+.++.+.+.++.+..++|.+...++ ++..++ +..|++.+...|..+.
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p-~~~~~~-~~lk~~~~~~~p~~l~ 244 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKP-RFGFKD-PGLKRFLKLMLPALLG 244 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCCCCc-hhHHHHHHHHHHHHHH
Confidence 99999888877555555543322467889999999999999999998886432222 222222 5688999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Q 011609 274 LCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEM-MIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVII 352 (481)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~-~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 352 (481)
....+++..+++.+.+.+. +.+++.++-++++.+++. .+..+++++..|.++++..++|.++.++..+.+++.+++.
T Consensus 245 ~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll 322 (518)
T COG0728 245 VSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLL 322 (518)
T ss_pred HHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 457779999999999998 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHhhhhcC----CcHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHHhhHH
Q 011609 353 GLFFWLLIMIYHNELALIFS----SSEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYLIGVP 422 (481)
Q Consensus 353 ~~~~~~~l~~~~~~i~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~i~ 422 (481)
++|.++++..+++|+++++. .+++......+.+..++++.++..+.-++. +|+|.|+++++++. ++++.
T Consensus 323 ~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~~ 401 (518)
T COG0728 323 TLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNIL 401 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHHH
Confidence 99999999999999999862 245567788899999999999998887776 99999999999997 99999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 011609 423 LGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRC 461 (481)
Q Consensus 423 ~~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~ 461 (481)
+++.+. +.+|..|++.+.. ++.++...+.++..+|+
T Consensus 402 l~~~l~--~~~~~~giala~s-~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 402 LNLLLI--PPLGHVGLALATS-LAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHH--hhccchHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 997777 8899999999999 99889988888888876
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.96 E-value=1.9e-25 Score=225.24 Aligned_cols=391 Identities=11% Similarity=0.066 Sum_probs=305.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccchHHH
Q 011609 41 KKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGV 119 (481)
Q Consensus 41 ~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~ 119 (481)
++..+.+.+..++++...+.+++...+++| +||+++|.++.+..+.+++......|++.+.. |. +|.+ ++
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~~--~~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDIS--HL 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccCC--HH
Confidence 567888899999999999999999999999 79999999999999999856666677877642 21 1111 23
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHHHHH
Q 011609 120 YMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLV 198 (481)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 198 (481)
...+..++....++++.++ +.+.+++...++ +++. ...+++..+..++..+.....+.++..++.+.....+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~ 150 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS 150 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence 4455566666666666554 455555555544 4432 345777778888888888899999999999999999988
Q ss_pred HHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCCCHHhhhhHHHHHHHHHHHHHHHHHHH
Q 011609 199 ALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLEN 278 (481)
Q Consensus 199 ~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 278 (481)
..+...++...+.. .++|..+.++++.+++.+..+...+..++ ++++++ ++ +++..|++++++.|...+++..+
T Consensus 151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~-~~---~~~~~k~ll~~~~~~~~~~~~~~ 224 (492)
T PRK10459 151 AVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPAL-HF---SLASVKPNLSFGAWQTAERIINY 224 (492)
T ss_pred HHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccc-ee---cHHHHHHHHhhhHHHHHHHHHHH
Confidence 88887777666654 47899999999999988776654333322 222221 12 23557899999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 011609 279 WYYRILISMTGNLQNAEIAVDALSICMTINGWEM-MIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFW 357 (481)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~-~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (481)
+..++|+.+++.+.+ ++++|.|+.+.++.+++. .+...++++..|.+++. ++|.++.++..++..++...+++|+.
T Consensus 225 ~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~ 301 (492)
T PRK10459 225 LNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLL 301 (492)
T ss_pred HHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988764 889999999999998865 45556788999999886 57889999999999999999999999
Q ss_pred HHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHHhhHHHHHHHHHHh
Q 011609 358 LLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYLIGVPLGCLMGWVF 431 (481)
Q Consensus 358 ~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 431 (481)
+++.+++++++.++.+++ ...+...+.++++..++..+..... |++|..+..+++.. ++.+|..+++. +
T Consensus 302 ~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~--~ 376 (492)
T PRK10459 302 LGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGG--Q 376 (492)
T ss_pred HHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHH--h
Confidence 999999999998887654 4556777787777777765554433 99999999998886 88888887777 7
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011609 432 HQGVMGIWAGMIFGGTAIQTLILAIITIR 460 (481)
Q Consensus 432 ~~g~~G~~~a~~~~~~~i~~~~~~~~~~~ 460 (481)
.+|..|+++++. +++.+......+..+|
T Consensus 377 ~~G~~g~a~a~~-i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 377 LAGLIGVALGFL-LVQIINTILSYFLMIK 404 (492)
T ss_pred hccHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 789999999999 9999988877776744
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.94 E-value=1.8e-23 Score=210.33 Aligned_cols=385 Identities=14% Similarity=0.094 Sum_probs=291.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccchH
Q 011609 39 ESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (481)
Q Consensus 39 ~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~ 117 (481)
..+++.|.+.....+++...+.+++....++| +|++++|.++.+.++.+++......|+..+..+.++++.+++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 45678899999999999999999999999999 79999999999999999967777789999999999888765554444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHHH
Q 011609 118 GVY-MQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVS 196 (481)
Q Consensus 118 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (481)
... ...........+.+.........+. ++ .....+++..+..+.........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 444 3333333333333333222222222 12 223446778889999999999999999999999999984
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCCCHHhhhhHHHHHHHHHHHHHHHHH
Q 011609 197 LVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCL 276 (481)
Q Consensus 197 ~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 276 (481)
+.. ..-....+.+.. .......++...+......+...+..+++........+. .++..|+.++++.|....+..
T Consensus 154 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 154 VSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF-SLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc-hhHHHHHHHHHhhHHHHHHHH
Confidence 444 111222222221 234455566666666655555555432211111111111 346789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 011609 277 ENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFF 356 (481)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (481)
..+..+.|+.+++++.+ +.++|.|+.+.++......+..+++++..|.+++...++|.++.++..++..++...+++|.
T Consensus 229 ~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 307 (480)
T COG2244 229 NFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPA 307 (480)
T ss_pred HHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998874 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHHhhHHHHHHHHHH
Q 011609 357 WLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYLIGVPLGCLMGWV 430 (481)
Q Consensus 357 ~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~i~~~~~l~~~ 430 (481)
.+++..+++++..++.+++. ..+...+.++++...+.++..... |+++..++.+.++. ++++.+++++.
T Consensus 308 ~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li-- 382 (480)
T COG2244 308 LLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLI-- 382 (480)
T ss_pred HHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHH--
Confidence 99999999999998876552 225555666666666655544444 99999999999997 89999999998
Q ss_pred hcCCchhHHHHHHHH
Q 011609 431 FHQGVMGIWAGMIFG 445 (481)
Q Consensus 431 ~~~g~~G~~~a~~~~ 445 (481)
+.+|..|+..+.. .
T Consensus 383 ~~~g~~g~~~a~~-~ 396 (480)
T COG2244 383 PRFGLIGAAIATA-S 396 (480)
T ss_pred HhhhhhhHHHHHH-H
Confidence 8899999998886 5
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=9.7e-21 Score=188.39 Aligned_cols=204 Identities=17% Similarity=0.164 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccc
Q 011609 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (481)
Q Consensus 36 ~~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 115 (481)
.++..|++++.++|.+++++.......+|+.+++++|+++++++++++++..+ ...+..|++.+.+++++|++|++|++
T Consensus 231 ~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l-~~~~~~gi~~a~~~lvgq~~Ga~~~~ 309 (464)
T PRK00187 231 SRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSV-AFMVPVGLSYAVTMRVGQHYGAGRLL 309 (464)
T ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 35678999999999999999999999999999999999999999999999998 88899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC--CH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchh
Q 011609 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQ--PD---DVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKN 189 (481)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~ 189 (481)
++++..+.++.++.+.+++.+++ +.+.+++.+++.. ++ |+.+.+..|+++.+++.++..++.++.+.+|+.||+
T Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~ 389 (464)
T PRK00187 310 EARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDA 389 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCcc
Confidence 99999999999999999877755 7889999998853 33 788899999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHH
Q 011609 190 MVIAWVSLVAL-LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYV 240 (481)
Q Consensus 190 ~~~~~~~~~~~-~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~ 240 (481)
+.+++.+++.. ++++++++++.+.+++|+.|+++++.+++.+..+.....+
T Consensus 390 ~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~ 441 (464)
T PRK00187 390 RTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAF 441 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 8999999999987789999999999999999887765555
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.86 E-value=1.1e-19 Score=179.39 Aligned_cols=209 Identities=20% Similarity=0.224 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccc
Q 011609 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (481)
Q Consensus 34 ~~~~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~ 113 (481)
+.+++..|++++.++|.+++++.......+.+.+++++|++.+++++++.++.++ ...+..|++++.+++++|++|++|
T Consensus 234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvG~~~Ga~~ 312 (455)
T COG0534 234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASF-IFMPPFGIAQAVTILVGQNLGAGN 312 (455)
T ss_pred CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4446799999999999999999999999999999999999999999999999999 888999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHH
Q 011609 114 YYMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (481)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (481)
++++++..+.+..++.++++...++ +.+.+++..+|..|+|+.+.+..++++..+..++.+.+.+..+.+||.||++.+
T Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~ 392 (455)
T COG0534 313 YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIP 392 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 9999999999999999999887755 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcCC
Q 011609 193 AWVSLVA-LLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGG 244 (481)
Q Consensus 193 ~~~~~~~-~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~ 244 (481)
++.++++ ..+.+++.+++.+.. +|..|.+++..+++.+..+...+++++++
T Consensus 393 ~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~ 444 (455)
T COG0534 393 FIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGR 444 (455)
T ss_pred HHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998 466678888887654 79999999999999999999888887753
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.86 E-value=2.7e-19 Score=178.10 Aligned_cols=211 Identities=15% Similarity=0.102 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccc
Q 011609 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (481)
Q Consensus 36 ~~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 115 (481)
.++.+|++++.++|..++.+...+...+.+.+++++|++++++++++.++.++ ...+..|++++.+++++|++|++|.+
T Consensus 254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~-~~~~~~gi~~A~~~lvg~~~Ga~~~~ 332 (478)
T PRK10189 254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAAL-INLPGNALGSASTIITGTRLGKGQIA 332 (478)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 35689999999999999999999999999999999999999999999999998 77789999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHH
Q 011609 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (481)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (481)
++++..+.+..++.+.++.++++ +.+.+++..+|..|+|+.+.+..++++.++..++.+++.+..+.+||.||++.+++
T Consensus 333 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 333 QAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 99999999999999988877755 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcCCcCC
Q 011609 195 VSLVA-LLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPL 247 (481)
Q Consensus 195 ~~~~~-~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~ 247 (481)
.+++. .++.+++.+++....++|+.|.+++..+++.+..++..+.+++++++.
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 99987 467778888887767889999999999999999998887777665544
No 19
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.86 E-value=1.2e-19 Score=181.02 Aligned_cols=206 Identities=20% Similarity=0.196 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccc
Q 011609 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (481)
Q Consensus 36 ~~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 115 (481)
.++..|++++.++|.+++.+...+...++..+++++|++++++++++.++.++ ...+..|++.+.++.++|++|+||++
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~-~~~~~~gl~~a~~~~v~~~~Ga~~~~ 312 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSL-LFMLPLSLAMALTIRVGFELGAGRTL 312 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 35578999999999999999999999999999999999999999999999988 67789999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHH
Q 011609 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (481)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (481)
++++..+.++.++...+++..++ +.+.+++..++..|+++.+.+..++++..+..++.++.....+.+||.||++.++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 392 (456)
T PRK01766 313 DARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFF 392 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHH
Confidence 99999999999999988877754 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 011609 195 VSLVAL-LVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (481)
Q Consensus 195 ~~~~~~-~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~ 242 (481)
.++++. ++++++.+++.+..++|+.|+++++.+++++..++..+++.+
T Consensus 393 ~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 393 ITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 999986 788999898887778899999999999999999887776654
No 20
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.84 E-value=1.3e-18 Score=171.53 Aligned_cols=200 Identities=15% Similarity=0.089 Sum_probs=183.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhH
Q 011609 258 SGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKG 337 (481)
Q Consensus 258 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~ 337 (481)
+..|++++.++|..++++.......+|+.+++++++ +.++|+.+++.++.++...+..+++.+..+.++|++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 457899999999999999999999999999999863 7789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHH
Q 011609 338 AKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYI 411 (481)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~ 411 (481)
+++..++++.++.+++++..+....+.+++..+++.|+++.+.+.+++++..++.++..+...+. |++|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999988888888999999999999999999999999999998877766554 999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011609 412 NLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIR 460 (481)
Q Consensus 412 ~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~ 460 (481)
++++. ++++++.+++.+..++|+.|+++|+. +++++..++..+++++
T Consensus 165 ~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~-is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVGN-ILNIVLDLWLVMGLHMNVQGAALATV-IAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHcCCccHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99996 99999999999777899999999999 9999988777666654
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.83 E-value=1.7e-18 Score=172.02 Aligned_cols=205 Identities=14% Similarity=0.186 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccccc
Q 011609 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGD-IELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (481)
Q Consensus 36 ~~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 114 (481)
.++..|++++.+.|..++.....+...+...+++++|+ +++++++++.++..+ ...+..|++.+.++.++|++|+||+
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~-~~~~~~gi~~a~~~lvg~~~Ga~~~ 307 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVL-YYLVAEGIAEGMQPPVSYYFGARQY 307 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhcCCCh
Confidence 35678999999999999999999999999999999985 689999999999988 7889999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC-CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHH
Q 011609 115 YMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQ-PDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (481)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (481)
|++++..+.++.+++..+++.+++ +.+.+++..++.. |+|+.+.+..|+++..++.++.++..+..+.+||.||++.+
T Consensus 308 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~ 387 (453)
T PRK09575 308 DNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKA 387 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999999888865 7899999999985 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcC
Q 011609 193 AWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (481)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (481)
++.+....++++++.+++... +|+.|+++++.+++.+..++..++++++
T Consensus 388 ~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 388 LFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888888777643 5999999999999999888877766653
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.81 E-value=8.2e-17 Score=163.15 Aligned_cols=205 Identities=14% Similarity=0.086 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccch
Q 011609 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (481)
Q Consensus 37 ~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 116 (481)
++..|++++.+.|..++++...+...+|+.+.+.+|++++++|+.+.++.++....+..+++.+..|.+++..+++|+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 34789999999999999999999999999885558999999999999998873445677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhH
Q 011609 117 LGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQ----PDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMV 191 (481)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (481)
.++..+++..+....+++.+++ ..+++++..++.+ ++|..+.+..++++.+++.++..+.....+.+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 9999999999999998888865 7899999988755 5577888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcC
Q 011609 192 IAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (481)
Q Consensus 192 ~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (481)
+++.+....+++++++++++.. +|..|+++|+.+++.+..++..++.+|+
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998854 5999999999999999998887777663
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.80 E-value=4.6e-16 Score=144.45 Aligned_cols=271 Identities=14% Similarity=0.115 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccchHHHHH
Q 011609 43 LWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYM 121 (481)
Q Consensus 43 l~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~ 121 (481)
++|.+.....++++..+.+++...+++| +|++++|.++...++.+++......|++.+..+.+++...+ +++.+.+.
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3678888999999999999999999999 79999999999999999856666889999988888876432 34445555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHH
Q 011609 122 QRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALL 201 (481)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 201 (481)
........+.+++........ ..+..++ ... .+........+.........+++++.++.+.....++...+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~----~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIA----SFFGNPS-LSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHcCCch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444433333332221 2333332 211 11222222225677888899999999999999999999988
Q ss_pred HHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCCCHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011609 202 VHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYY 281 (481)
Q Consensus 202 ~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 281 (481)
...++...++.. +.+..+..++..++..+..++..++.+|+. +.++ ...+++..|++++++.|..+.++...+..
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-RPRF---SFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccc---cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766666653 345888999999999888888777776643 2222 22224678899999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011609 282 RILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANE 329 (481)
Q Consensus 282 ~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~ 329 (481)
..|..+++.+.+ ++++|.|+++.++.+....+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999874 88999999999999999999999999999999875
No 24
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.73 E-value=7.6e-15 Score=145.12 Aligned_cols=204 Identities=15% Similarity=0.130 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccchH
Q 011609 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (481)
Q Consensus 38 ~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~ 117 (481)
+..|++++...|.+++....++...+|+.+.+.+++.++++++.+.++.++....+..++++...|..++...++|.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 36889999999999999999999999999999999999999999999999866677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHH
Q 011609 118 GVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLG----QPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (481)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (481)
++.+++++.....+.++.++. +.+++|+++++. .+.|..+.....+++.++++++.++..++...+.+.+|+|.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 999999999999999999865 899999997763 356677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcC
Q 011609 193 AWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (481)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (481)
+..++++.++|++++..+... +|..|.++|+.++..+.+++..+.++|+
T Consensus 355 ~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888865 4999999999999999999988888774
No 25
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.72 E-value=1.1e-15 Score=154.29 Aligned_cols=202 Identities=14% Similarity=0.114 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCh------h---HHHHH-HHHHHHHHHHHHHHHHHHHHhHHHH
Q 011609 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGD------I---ELAAI-SIANNVIVGFDFGLLLGMASALETL 104 (481)
Q Consensus 36 ~~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~------~---~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (481)
.++..|++++.+.|.+++++...+...+|+.++++ +++ + .+|.+ +.+.++..+ ...+..+++.+..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~-~~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTF-PAVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHh-HHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999988 432 1 22332 344556666 556788899999999
Q ss_pred HHhHhcccccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 011609 105 CGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFL 183 (481)
Q Consensus 105 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 183 (481)
++++.|++|+++.++..++...+...++++.++. ..+.++++.++..++ ++.++++++++..++..+.....+.+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988887765 788899988876543 35678999999999999999999999
Q ss_pred HHcchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 011609 184 QSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (481)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~ 242 (481)
++.||++.+++.+++..++++++++.++....+|+.|+++++.+++.+..++..++.+|
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988874345699999999999999999888877765
No 26
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.71 E-value=3.3e-15 Score=143.60 Aligned_cols=188 Identities=18% Similarity=0.194 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 011609 269 ASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVT 348 (481)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~ 348 (481)
|.++.++...+...+++.++++++ ++++++|+.+.++..+...+..+++++..|.++++.|++|+|+.++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678889999999999999999998 678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHHhhHH
Q 011609 349 SVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYLIGVP 422 (481)
Q Consensus 349 ~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~i~ 422 (481)
...++++.+++++++++++..+++.|++..+.+..++++..++.++.++..... |+.+..+..++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 999999999999999999999998777778888999999999999888766654 89999999999886 88888
Q ss_pred HHHHHHH-Hhc-CCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011609 423 LGCLMGW-VFH-QGVMGIWAGMIFGGTAIQTLILAIITIR 460 (481)
Q Consensus 423 ~~~~l~~-~~~-~g~~G~~~a~~~~~~~i~~~~~~~~~~~ 460 (481)
+++++.. ..+ +|..|+++++. +++++..++..++.++
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~-~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATV-ISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 8888874 345 67999999999 9999998888777665
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.70 E-value=8.2e-18 Score=143.15 Aligned_cols=160 Identities=26% Similarity=0.386 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccchHHHHHHHHHHHH
Q 011609 49 PAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVL 128 (481)
Q Consensus 49 p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 128 (481)
|.+++++...+...+|+.+++++|++++++++++.++.++ ...+..|++.+..+.++|++|++|++++++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~-~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSI-LFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-Hhhhcccccccccceeecccccccccccccccccccccc
Confidence 8899999999999999999999999999999999999999 777999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHHHHHHH-HHHHHH
Q 011609 129 FVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVAL-LVHIFV 206 (481)
Q Consensus 129 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l 206 (481)
...+++..++ +.+.+++..+++.|+|+.+.+..|+++..+..++..+.....+++++.||++.+++.++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999988876 88999999999999999999999999999999999999999999999999999999999998 999998
Q ss_pred HHH
Q 011609 207 SWL 209 (481)
Q Consensus 207 ~~~ 209 (481)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 28
>PRK10459 colanic acid exporter; Provisional
Probab=99.66 E-value=5.7e-13 Score=134.57 Aligned_cols=200 Identities=13% Similarity=-0.005 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccc
Q 011609 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (481)
Q Consensus 37 ~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 115 (481)
++..|++++++.|.+.+++...+...+|+.++++ +|++++|.|+.+.++.+.....+...++....|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 3467999999999999999999999999999999 69999999999999988744445555777888888886 56788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHH
Q 011609 116 MLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAW 194 (481)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (481)
+.++.+++...+...++++..+. ..+++|++.++.+++ +..+...++++++...+..+.......+++.||+|..+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 89999999999988888888765 788899987776544 567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 011609 195 VSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (481)
Q Consensus 195 ~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~ 242 (481)
.+++..+++++..+.+.. .+|+.|+++++.+++.+......++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888777666654 3599999999999999988887777744
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.66 E-value=7.2e-13 Score=129.13 Aligned_cols=204 Identities=14% Similarity=0.127 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccchH
Q 011609 38 VESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (481)
Q Consensus 38 ~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~ 117 (481)
+..|++.+...|+.++...+++...+|+.+-+.+.+.+...+..+..+.++..-.+..++++...|..|+...++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 57899999999999999999999999999999999999999999999999867788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHH
Q 011609 118 GVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLG----QPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVI 192 (481)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (481)
++..+.++.+..++.++.+.. ..+++|++..+. .+++........+....+++++..+..++...+.+.+|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999965 899999997662 245556677888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcC
Q 011609 193 AWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (481)
Q Consensus 193 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (481)
++..+++.++|+.++..+... +|..|.+.++.++.++.+.+.++.++|+
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999777754 4888899999999988888887777765
No 30
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.65 E-value=3.2e-16 Score=133.32 Aligned_cols=156 Identities=22% Similarity=0.379 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 011609 269 ASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVT 348 (481)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~ 348 (481)
|.+++++.+...+.+++.+++++| ++++++++++.++.++...+..+++++..+.+++++|++|+|+.++..+.+..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 888999999999999999999996 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHHhhHH
Q 011609 349 SVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYLIGVP 422 (481)
Q Consensus 349 ~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~i~ 422 (481)
..+++++.++++..+++++..+|++|++..+.+.+++++..++.++.++..... |+++..++.+.++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998877776 99999999999999999999
Q ss_pred HHHH
Q 011609 423 LGCL 426 (481)
Q Consensus 423 ~~~~ 426 (481)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9885
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.65 E-value=9e-14 Score=137.16 Aligned_cols=200 Identities=7% Similarity=-0.054 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccccc
Q 011609 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (481)
Q Consensus 36 ~~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 114 (481)
+++..|++++.+.|..++++...+...+|+.++++ +|++++|.|+.+.++.+.+...+..+++++..|.+++. +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 35678999999999999999999999999999985 89999999999999988645778999999999999995 567
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHH
Q 011609 115 YMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (481)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (481)
++.++..++........+++..++ ++++++++.++.+++ ++.+.+++++++++.++...+..+...+.+.++++...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888777755 689999999887665 34467788998888888877777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 011609 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (481)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~ 242 (481)
...+...+++++++++++.. +|..|+++++.+++.+...+......+
T Consensus 365 ~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999875 499999999999999998877655543
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.64 E-value=2.3e-12 Score=118.09 Aligned_cols=247 Identities=13% Similarity=0.111 Sum_probs=176.6
Q ss_pred HHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccchHHHHHHHHHHHHHHHHHHHHH
Q 011609 59 SMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLP 137 (481)
Q Consensus 59 l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (481)
..+++...+++| +|++++|.++....+..+.......|+...... . .++|+++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999 799999999999999998455456677666433 2 2345556666666655444444433332
Q ss_pred HHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011609 138 LYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLG 217 (481)
Q Consensus 138 ~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g 217 (481)
+ ...+...+ .+++. ..++....+..+........++.+++.+|.+..........+....+...+.. .+.+
T Consensus 77 ~---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLN 147 (251)
T ss_pred H---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 2 11111233 33322 23455666778888889999999999999999999999998877555444443 3448
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCCCHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Q 011609 218 VIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIA 297 (481)
Q Consensus 218 ~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (481)
..+..++..+++++..++.....++ +.+ ..+ +.+..| ..+++.|....++......+.|..+++.+. ++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~ 218 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRR-KLR--LSF----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEA 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-ccC--CCc----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHH
Confidence 8888999888888777665543332 111 111 122234 799999999999999999999999999844 3899
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011609 298 VDALSICMTINGWEM-MIPLAFFAGTGVRVAN 328 (481)
Q Consensus 298 ~a~~~~~~~l~~~~~-~~~~~~~~a~~p~~~~ 328 (481)
+|.|+++.++.+.+. .+..++++...|.++|
T Consensus 219 ~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 219 VGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999888 9999999999999986
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.56 E-value=1.4e-12 Score=131.50 Aligned_cols=185 Identities=18% Similarity=0.221 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccccc
Q 011609 36 IWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY 114 (481)
Q Consensus 36 ~~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 114 (481)
.++..|++++.++|..++++...+.+.+|+.++++ +|++++|.|+.+..+... ...+...++....|..++...++|.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~-~~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL-LLIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 36689999999999999999999999999999999 799999999988888877 7888889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHH
Q 011609 115 YMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (481)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (481)
++.++..++...+....+++..+. ..+++|++..+.+++. ..+...++++++..++..+.......+++.|+.+..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999988865 7888899887765542 2367788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcchhHHHH
Q 011609 194 WVSLVALLVHIFVSWLFVNRMQLGVIGTAATL 225 (481)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~ 225 (481)
..+.++.++|++++++++.. +|..|++.++
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~ 394 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH
Confidence 99999999999999999965 4889999988
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.26 E-value=3.1e-08 Score=99.00 Aligned_cols=414 Identities=10% Similarity=-0.039 Sum_probs=232.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhHhcccccchHHHHH
Q 011609 44 WYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVG-FDFGLLLGMASALETLCGQAFGAKRYYMLGVYM 121 (481)
Q Consensus 44 ~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~ 121 (481)
.+.+.-.++.+++..+.+++.+.++-| ++|+.+|..++=..+... .....=-++..+..+.-.+...++|.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 355666788899999999997777777 899999988554444432 123333467766554333321111222333332
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhHH--H--HHHcCCC-HH---HHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHcc
Q 011609 122 QRSWIVLFVCCVLLLPLYL--FASP--V--LKLLGQP-DD---VAELSGMVSIWMIPLHFSFAFQ----FPLQRFLQSQL 187 (481)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~--~~~~--i--~~~~~~~-~~---~~~~~~~~l~i~~~~~~~~~~~----~~~~~~l~~~~ 187 (481)
+....+..++++++..+.+ ...| + ..+.... ++ ..+.....+.+...+.....+. .+.+..+.-.-
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 2222223333322221111 1111 1 0111111 11 1111222233333333333333 33344455555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh-hcCCc-----c-hhHHHHHHHHHHHHHHHHHHH-hcC--C---cCCcCCCCCH
Q 011609 188 KNMVIAWVSLVALLVHIFVSWLFVNR-MQLGV-----I-GTAATLNFSWWILVFGLFGYV-SCG--G---CPLTWTGFTL 254 (481)
Q Consensus 188 ~~~~~~~~~~~~~~~~i~l~~~li~~-~~~g~-----~-g~a~a~~i~~~i~~~~~~~~~-~~~--~---~~~~~~~~~~ 254 (481)
|.+.-........+++..+....... ++++. . -+.++..++++...+...... ... . .+...++...
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~ 243 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISS 243 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhccccccc
Confidence 55555555555555554433333211 11111 1 123444455544433222111 111 1 1111222211
Q ss_pred ---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011609 255 ---EAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGN--LQNAEIAVDALSICMTINGWEM-MIPLAFFAGTGVRVAN 328 (481)
Q Consensus 255 ---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~l~~~~~-~~~~~~~~a~~p~~~~ 328 (481)
+....-++..+.......+++.-.+.++.|.+++.. +.+ .++-|.|++++++.+++. .+...+-.+.....++
T Consensus 244 ~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk 322 (549)
T PF04506_consen 244 GNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK 322 (549)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH
Confidence 111124688999999999999999999999988888 654 677789999999988875 6777788888888888
Q ss_pred hhcCCCh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011609 329 ELGAGNG---------KGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQP 399 (481)
Q Consensus 329 ~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 399 (481)
...+++. ++..+.+...++....+++.+.......++.+.+++.++.=........+++++...++.++++
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 323 LLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred HhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 7665433 3456667777777777777766666667777777765432112234677888888888888887
Q ss_pred hhc---------ccchhhHHHHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 011609 400 ILS---------GWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRC 461 (481)
Q Consensus 400 ~~~---------g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~ 461 (481)
+.. .+-+.......+.. ++.+..++++... ++|..|..+|.. +....+.+....+.++.
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~G~~GlI~AN~-iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GLGAVGLILANC-INMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCchHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 765 22222222223332 5556678888844 799999999999 99999988887777653
No 35
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=3.6e-06 Score=78.94 Aligned_cols=405 Identities=13% Similarity=-0.003 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhHhcccc---c
Q 011609 40 SKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LGDIELAAISIANNVIVG-FDFGLLLGMASALETLCGQAFGAKR---Y 114 (481)
Q Consensus 40 ~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~s~~~g~~~---~ 114 (481)
..+-.+.+.-.+..+++..+.+++.+.++=| ++++.+|..++-..+..- .....=.++..+ ....|..+ .
T Consensus 7 L~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A-----~l~~gs~~~d~~ 81 (530)
T KOG2864|consen 7 LESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLA-----ELRIGSEPADTW 81 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHH-----hccCCCCCCccH
Confidence 3345556666677777777777776665555 899999998776655543 112122244444 33333333 3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHH
Q 011609 115 YMLGVYMQRSWIVLFVCCVLLLPLYLFASPVL-KLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (481)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (481)
++..+..+.+.-+.....+.+.-+++...... .....+. -..-..+...+.....+...+.-..|..-+.+.-.
T Consensus 82 te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p~-----y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~ 156 (530)
T KOG2864|consen 82 TEFINLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSPL-----YAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRA 156 (530)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCch-----HhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 35555555555555555544443321111111 0001111 11112222233333333333344444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHh-hh-cCCcchhHHHHHHHHHHHHHHHHHHHhc-CC-cCC---------cCCCCCHH--hhh
Q 011609 194 WVSLVALLVHIFVSWLFVN-RM-QLGVIGTAATLNFSWWILVFGLFGYVSC-GG-CPL---------TWTGFTLE--AFS 258 (481)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~-~~-~~g~~g~a~a~~i~~~i~~~~~~~~~~~-~~-~~~---------~~~~~~~~--~~~ 258 (481)
+...+..++.-++.+.... +. .+++...|+|.........+...+++.+ ++ .+. .+++.... ...
T Consensus 157 i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~f 236 (530)
T KOG2864|consen 157 IAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIF 236 (530)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccc
Confidence 5566655555333333332 11 2355555666555544444422222222 22 111 11111111 001
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCC
Q 011609 259 GLWQFVKLSAASGVMLCLENWYYRILISMTGNL---QNAEIAVDALSICMTINGWEM-MIPLAFFAGTGVRVANELGAGN 334 (481)
Q Consensus 259 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~l~~~~~-~~~~~~~~a~~p~~~~~~g~~~ 334 (481)
.-++..+.-.....+++.-++.+..+..+++.. ..+++ |.|.++++..++.. .+...+-.......++....++
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~Q--gvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~ 314 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQ--GVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDN 314 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchh--hHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccc
Confidence 234667777777778888888888887666532 22244 48999988877765 7778888888888888877776
Q ss_pred hhHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc--------c
Q 011609 335 GKGAKF---ATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS--------G 403 (481)
Q Consensus 335 ~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------g 403 (481)
.|+.++ ++...++....+++.+...-...++.+..+++++.=........+++++...++.+++++.. +
T Consensus 315 qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~ 394 (530)
T KOG2864|consen 315 QENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATS 394 (530)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccH
Confidence 666555 45555666666666655555666677778775532112224477888898888888887765 1
Q ss_pred -cchhhHHHHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011609 404 -WQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIR 460 (481)
Q Consensus 404 -~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~ 460 (481)
+-....+..++.. ++.+.++|++. -.+|..|..+|.. +.+.++-.....+.++
T Consensus 395 ~qi~~~n~~mlafS-viflilsylL~--~~~~~~GlIlANi-iNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 395 RQIDKHNKFMLAFS-VIFLILSYLLI--RWFGLVGLILANI-INMSLRILYSLRFIRH 448 (530)
T ss_pred HHHHhcccchhHHH-HHHHHHHHHHH--HHhchhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 1111122222232 55567889988 7788999999999 9998887766555554
No 36
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.04 E-value=2e-08 Score=99.00 Aligned_cols=200 Identities=13% Similarity=0.154 Sum_probs=172.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 011609 257 FSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGW-EMMIPLAFFAGTGVRVANELGAGNG 335 (481)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~-~~~~~~~~~~a~~p~~~~~~g~~~~ 335 (481)
.++.|++.+.+.|..+....+.....++...++++| +..+++.++++...+. .+.+..++..+..|.+++++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 467899999999999999999999999999999999 4588899998888777 4678899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhH
Q 011609 336 KGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVA 409 (481)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~ 409 (481)
+.......++........++.+.+.. +.+++...+..|+++...+..+.++.....+-+....... +......
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~~-~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLIL-NSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999999998886554 4599999999999988888888888777777666655554 6666777
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 011609 410 YINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRC 461 (481)
Q Consensus 410 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~ 461 (481)
++...+. .+.+++++++.+.+++|..|+..+.. +++++.......+....
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~-~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALV-ASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHH-HHHHHHHHHHHHHheec
Confidence 7777775 99999999999999999999999999 99999888777766653
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.02 E-value=2e-06 Score=77.20 Aligned_cols=309 Identities=13% Similarity=0.076 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccc
Q 011609 39 ESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-L-GD-IELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYY 115 (481)
Q Consensus 39 ~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~-l-g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 115 (481)
..+++.++-.|+.++.++..+...+.+.-++| - .+ +.+++|+++..+.-+ +..+...+-.....++ +++++
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf-~~sp~~~~~~igl~~V-----~s~rs 82 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLF-FASPLSMFHHIGLVFV-----NSKRS 82 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHH-HhChhhhhHHHHHHHh-----cchhh
Confidence 67889999999999999999999999999987 4 33 459999999998877 5656666665544444 33322
Q ss_pred hHHHHHHHHHHHH-HHHHHHHH-HHH-HhhHHHH-HHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhH
Q 011609 116 MLGVYMQRSWIVL-FVCCVLLL-PLY-LFASPVL-KLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMV 191 (481)
Q Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~-~~~-~~~~~i~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (481)
+ +....++... ....++.. +.+ .+...++ ..++.++++.+.+...+.++.+.-++.++....++++.-++++..
T Consensus 83 r--r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 83 R--RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred h--HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 2 2222222222 22222212 223 2333333 566889999999999999999999999999999998887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hc------CCcchhHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCCCHHhhhhHHHHH
Q 011609 192 IAWVSLVALLVHIFVSWLFVNR-MQ------LGVIGTAATLNFSWWILVFGLFGYVSCGGCPLTWTGFTLEAFSGLWQFV 264 (481)
Q Consensus 192 ~~~~~~~~~~~~i~l~~~li~~-~~------~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (481)
....++...+..+++..+++.. ++ .++.|...+.. ..+-...+ .++..-++..........++.-.+++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~-vr~t~v~L-Gy~~~i~~~~p~~~~~~~~~~~tl~~~l 238 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIA-VRFTIVCL-GYYQSIHDIIPQLSGLEKGDSATLQRML 238 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHH-HHHHHHHH-HHHHHHhhhccccCCcccCCChhHHHHH
Confidence 6666666655555555555531 11 12222222211 11111112 2221111222222222233335588999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHH--
Q 011609 265 KLSAASGVMLCLENWYYRILISMTGN-LQNA---EIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGA-- 338 (481)
Q Consensus 265 ~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~-- 338 (481)
++.+|.+..........-+.+.++++ ++++ +++++...+.+...-..+....-+ .+..|..-+. ++.++.
T Consensus 239 ~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~~---~~~~~~~~ 314 (345)
T PF07260_consen 239 KFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDKN---NPQNKLRN 314 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhcc---Cccccccc
Confidence 99999999999999999999999999 4432 245555444333332222222211 1223332222 222222
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHH
Q 011609 339 ------KFATIVSVVTSVIIGLFFWLLIM 361 (481)
Q Consensus 339 ------~~~~~~~~~~~~~~~~~~~~~l~ 361 (481)
+..+++....++++++.+++.++
T Consensus 315 ~~~~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 315 CGNPVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23666666667777766665553
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.61 E-value=8.2e-06 Score=81.86 Aligned_cols=203 Identities=9% Similarity=0.019 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhccccc--
Q 011609 40 SKKLWYIVGPAIFSRLASYSMLVITQAFAGH--L-GDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRY-- 114 (481)
Q Consensus 40 ~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~--l-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~-- 114 (481)
-+++++.+.....+.++..+.+--|+.++.. + +.++.|.|++++++-++..-.++..+-.+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4678899999999999999999999999999 5 8899999999999999877778888888888888887765433
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Q 011609 115 -------YMLGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQ 186 (481)
Q Consensus 115 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 186 (481)
++..+.+...+.+...++++.... ...++.++.+++++.=....+...++..+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 234556666666666666555543 667777777765443223335677899999999999999999999998
Q ss_pred chhhHHHHHHH---HHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcC
Q 011609 187 LKNMVIAWVSL---VALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (481)
Q Consensus 187 ~~~~~~~~~~~---~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (481)
...+.....+- ...++.+..++++... ++|..|..+|+++...+..+...++.+|.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766554444 3455666778888876 78999999999999999999988888764
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.46 E-value=2.7e-05 Score=64.52 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=72.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhc
Q 011609 163 SIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSC 242 (481)
Q Consensus 163 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~ 242 (481)
+++++++.++..+....++.+++.||++..+..+..+.++|+++++++++. +|..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999854 599999999999999999988888876
Q ss_pred C
Q 011609 243 G 243 (481)
Q Consensus 243 ~ 243 (481)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 4
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=0.0046 Score=58.72 Aligned_cols=201 Identities=8% Similarity=0.049 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccchH
Q 011609 41 KKLWYIVGPAIFSRLASYSMLVITQAFAGH---LGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYML 117 (481)
Q Consensus 41 ~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~---lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~ 117 (481)
++..+......-+.++.++.+--|..+++. ++-++.|.|.+++++-++..-.++..+-.......+|...++++|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 345666666777788888888888888884 36678899999988888767777888888888888888877766665
Q ss_pred HHH---HHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHH
Q 011609 118 GVY---MQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (481)
Q Consensus 118 ~~~---~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (481)
++. ....+.....++++.+.. ...+++.+.+++++.=....+...+++.+..+++.+++.+..+++.+....+..-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 544 444555555555444433 5566777777765432223345778999999999999999999999887766544
Q ss_pred H---HHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcC
Q 011609 194 W---VSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCG 243 (481)
Q Consensus 194 ~---~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (481)
. ...+..+..++.+++++.++ |..|..+|+++...+.-+....+.++.
T Consensus 399 ~~n~~mlafSviflilsylL~~~~--~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRWF--GLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34445566678889999776 779999999999888887777666653
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.85 E-value=0.0062 Score=56.07 Aligned_cols=186 Identities=15% Similarity=0.095 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q 011609 265 KLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMI-PLAFFAGTGVRVANELGAGNGKGAKFATI 343 (481)
Q Consensus 265 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~-~~~~~~a~~p~~~~~~g~~~~~~~~~~~~ 343 (481)
|.+......+........+...++++.-+ +++.|.|+....+.++...+ ..+++++..-.+++...+ .++.++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~-~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLG-PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 34444555555666555566666665543 88999999999998888766 677888887777765432 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc--ccchhhHHHHHHHHHHhhH
Q 011609 344 VSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS--GWQSYVAYINLGCYYLIGV 421 (481)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~i 421 (481)
.......+..+.. .....+...+..++..........................+ ++.+.....+.... +..+
T Consensus 80 ~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (273)
T PF01943_consen 80 SVLFLLLIFSLIF-----LLILLIASFFGNPSLSLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS-LLSL 153 (273)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3333333222222 22222222444333222211111111111122222333333 56666666666665 4444
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 011609 422 PLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRC 461 (481)
Q Consensus 422 ~~~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~ 461 (481)
.+.+.+.. ...+..+...+.. ++..+..++.....+|.
T Consensus 154 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 191 (273)
T PF01943_consen 154 LLILLLLF-LGSSLWGFLLGLV-ISSLVSLIISLFYLRRK 191 (273)
T ss_pred HHHHHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34433332 3334888888888 88888877777777653
No 42
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.84 E-value=0.026 Score=52.42 Aligned_cols=340 Identities=12% Similarity=0.065 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHhHHHHHHhHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHH
Q 011609 88 GFDFGLLLGMASALETLCGQAFGAKRYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMI 167 (481)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~ 167 (481)
++...+..|+....++.+|+..=++|.+++..-+.....+....+..+..++. ....+... .|=...+
T Consensus 71 ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf-------~~~~~~si-----~yk~l~~ 138 (467)
T COG4267 71 IFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF-------FVNNQYSI-----VYKILAC 138 (467)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh-------hhcCchhH-----HHHHHHH
Confidence 33455777888888889988887777777766655555544444433332111 11112211 1112233
Q ss_pred hhHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHhcCCcCC
Q 011609 168 PLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNRMQLGVIGTAATLNFSWWILVFGLFGYVSCGGCPL 247 (481)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~ 247 (481)
.........-+...++.+.+|.+.....-.++.++...+..++-. .++.|..++..++..+.......+..|.-...
T Consensus 139 ~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~ 215 (467)
T COG4267 139 ALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSS 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc
Confidence 444455555566778889999999888888887777776655553 48899999999998888777777766541111
Q ss_pred cCCCCCHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH------HHHHHHHHHHHHHHHH-----H
Q 011609 248 TWTGFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVD------ALSICMTINGWEMMIP-----L 316 (481)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a------~~~~~~~l~~~~~~~~-----~ 316 (481)
+...++.- +..++. ....+......++-.+++.+.=.-++++.-.+ .|-+..-...+...|. .
T Consensus 216 ~~i~FdFL--~~~~~y----~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i 289 (467)
T COG4267 216 RRIGFDFL--LYRRKY----PSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLI 289 (467)
T ss_pred cccceehh--hhhhcc----hHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeee
Confidence 11112111 111121 22234445566666666644322222111111 1222222222222222 2
Q ss_pred HHHHHHHHHHHHh----hcCC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHH
Q 011609 317 AFFAGTGVRVANE----LGAG-------NGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLS 385 (481)
Q Consensus 317 ~~~~a~~p~~~~~----~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l 385 (481)
.+-+...+.--+. -|.+ +.++.....++.+.-.+-+-...++.++++++.+...++-++...+....-.
T Consensus 290 ~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~l~lF~vd~ 369 (467)
T COG4267 290 SLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYYLDLFYVDV 369 (467)
T ss_pred eeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 2222233322111 1112 2334444556666666777778888999999999999876654333333332
Q ss_pred HHHHHHHHHhhhhhhhc--ccchhhHHHHHHHHHHhhHHHHHHHHHH-hcCCchhHHHHHHHHHHHHH
Q 011609 386 ILLAFTILLNSVQPILS--GWQSYVAYINLGCYYLIGVPLGCLMGWV-FHQGVMGIWAGMIFGGTAIQ 450 (481)
Q Consensus 386 ~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~i~~~~~l~~~-~~~g~~G~~~a~~~~~~~i~ 450 (481)
.-..+..++.++-.+.- .+-+..+..+..- .+.+..+.++.... |++--.|...|.. ++..+.
T Consensus 370 lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l~lgp~~~g~gff~a~f-l~vlv~ 435 (467)
T COG4267 370 LGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFLELGPGYYGVGFFLASF-LYVLVA 435 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHHHhCccceehHHHHHHH-HHHHHH
Confidence 33333444444433333 4444444444433 36666666665422 4444455555555 444333
No 43
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.50 E-value=0.059 Score=49.17 Aligned_cols=138 Identities=9% Similarity=0.103 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 011609 258 SGLWQFVKLSAASGVMLCLENWYYRILISMTGNL-QNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGK 336 (481)
Q Consensus 258 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~ 336 (481)
...++++++-+|.++++....+.-++.|.-+++- -+..+.+|+|+++..+.-++..+...+.++....+.. +.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KRS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hhh
Confidence 4577999999999999999999999999888763 3333568999999999999888888877766655432 222
Q ss_pred HHHHHHHHHHHHHHHHH-HH-HHHHHHHhhHHh-hhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 011609 337 GAKFATIVSVVTSVIIG-LF-FWLLIMIYHNEL-ALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS 402 (481)
Q Consensus 337 ~~~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~i-~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 402 (481)
++....+.....++. .. ..+..-.++..+ .+++.-++++.+.+...+.++.+.-+++++....+
T Consensus 83 --rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~q 149 (345)
T PF07260_consen 83 --RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQ 149 (345)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222222111111 11 111122223333 35667788999999999999999999999988887
No 44
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.46 E-value=0.00085 Score=55.45 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011609 386 ILLAFTILLNSVQPILS------GWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITI 459 (481)
Q Consensus 386 ~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~ 459 (481)
.+++++.++.++..... ||+|..++.++++. ++++++++++. +++|..|+++++. +++.+...+..+..+
T Consensus 3 ~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li--~~~G~~Gaa~a~~-i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 3 QILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILI--PRFGIYGAAIATA-ISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHH--HHHHHhHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45555555555544433 99999999999997 99999999998 9999999999999 999999999888888
Q ss_pred hc
Q 011609 460 RC 461 (481)
Q Consensus 460 ~~ 461 (481)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 76
No 45
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.15 E-value=0.18 Score=45.60 Aligned_cols=158 Identities=15% Similarity=0.200 Sum_probs=84.7
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011609 284 LISMTGNLQNAEIAVDALSICMTINGWEMMIP-LAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMI 362 (481)
Q Consensus 284 ~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~-~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (481)
...++++.-+ +++.|.|+....+..+...+. .++.+.. .+. .++++++.++..+.......+..++..+
T Consensus 7 ~~~~lar~l~-~~~~G~~~~~~s~~~~~~~~~~~g~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (251)
T PF13440_consen 7 FLILLARYLG-PEDFGIYALIFSIVSILSIVASLGLRQSL----VRS-AARDKQDIRSLLRFSLLVSLLLAVILAI---- 76 (251)
T ss_pred HHHHHHHHCC-HHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-hccCHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3444455442 788999999999888887663 4443333 222 3355666666666655554444443332
Q ss_pred hhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHh----hhhhhhc--ccchhhHHHHHHHHHHhhHHHHHHHHHHhcCCch
Q 011609 363 YHNELALIFSSSEAVLQAVNKLSILLAFTILLN----SVQPILS--GWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVM 436 (481)
Q Consensus 363 ~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~--g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~ 436 (481)
+...+...+ ++++... ++.+..+..++. .....+. +|.+.......... +....+...+.. ...+..
T Consensus 77 ~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~ 149 (251)
T PF13440_consen 77 LAILIAYFF-GDPELFW----LLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLY-LGLNLW 149 (251)
T ss_pred HHHHHHHHh-CChhHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHH-HHhhHH
Confidence 223333344 3333221 222222222222 3333333 77777777777765 333323333222 233888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 011609 437 GIWAGMIFGGTAIQTLILAIITI 459 (481)
Q Consensus 437 G~~~a~~~~~~~i~~~~~~~~~~ 459 (481)
+..++.. ++..+..+......+
T Consensus 150 ~~~~~~~-~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 150 SILLAFI-ISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhc
Confidence 8888888 888887776665444
No 46
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=89.94 E-value=15 Score=33.41 Aligned_cols=37 Identities=3% Similarity=-0.193 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH
Q 011609 306 TINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFAT 342 (481)
Q Consensus 306 ~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~ 342 (481)
-+.+....+...++.......-+...++|.++.++..
T Consensus 104 ~Lg~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~ 140 (265)
T TIGR00822 104 AAGQVLTIFVRTITVLFQHAADKAAKEANTAAISRLH 140 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHH
Confidence 3334444555555666667777777788888886553
No 47
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=83.14 E-value=37 Score=31.03 Aligned_cols=38 Identities=3% Similarity=-0.071 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHH
Q 011609 306 TINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATI 343 (481)
Q Consensus 306 ~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~ 343 (481)
-+.+....+...++....+..-+...++|.++.++...
T Consensus 105 llg~~l~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~ 142 (267)
T PRK09757 105 LLMQYVILFFYSAFSLFMTKADKCAKEADTAAFSRLNW 142 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 33444445556666677777777788888888766533
No 48
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=74.08 E-value=91 Score=30.41 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=30.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 011609 334 NGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALI 370 (481)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l 370 (481)
+.++.+++.+++...+.+......+++....-|+...
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~ 125 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQ 125 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999999999988888877777777763
No 49
>PRK01637 hypothetical protein; Reviewed
Probab=65.08 E-value=1.2e+02 Score=28.16 Aligned_cols=10 Identities=0% Similarity=-0.087 Sum_probs=4.5
Q ss_pred HHHHhhcCCC
Q 011609 325 RVANELGAGN 334 (481)
Q Consensus 325 ~~~~~~g~~~ 334 (481)
-+.+.++.++
T Consensus 115 a~N~i~~~~~ 124 (286)
T PRK01637 115 ALNTIWRSKR 124 (286)
T ss_pred HHHHHhCCCC
Confidence 3344455443
No 50
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=54.63 E-value=78 Score=22.92 Aligned_cols=40 Identities=20% Similarity=0.102 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHH
Q 011609 316 LAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLF 355 (481)
Q Consensus 316 ~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 355 (481)
..++......+-+.+.+||++++++.-+++..++.+-...
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3334444566777888999999999999888887554443
No 51
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=43.68 E-value=78 Score=19.90 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHHH
Q 011609 438 IWAGMIFGGTAIQTLILAIITI-RCDWDKEAETA 470 (481)
Q Consensus 438 ~~~a~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~ 470 (481)
+|.|.. ++.++...+...... +++.++..++.
T Consensus 7 VW~sYg-~t~~~l~~l~~~~~~~~r~~~~~l~~~ 39 (46)
T PF04995_consen 7 VWSSYG-VTALVLAGLIVWSLRRRRRLRKELKRL 39 (46)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 444433333333332 23444444443
No 52
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=39.93 E-value=3.9e+02 Score=26.84 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHH--HHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 011609 383 KLSILLAFTILLNSVQPILS------GWQSYVAYINLGCY--YLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLIL 454 (481)
Q Consensus 383 ~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~--~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~ 454 (481)
..+.=++.+..+-++..+.. ++.+.......... -++..|++=.+... .+|...+.+... ..-.+..++.
T Consensus 135 R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g-~~g~i~~~~w 212 (466)
T KOG2532|consen 135 RFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFG-IVGLIWFILW 212 (466)
T ss_pred HHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHH-HHHHHHHHHH
Confidence 33333445555555655555 44444443333322 35666666555511 389999999888 6666666666
Q ss_pred HHHHHhc
Q 011609 455 AIITIRC 461 (481)
Q Consensus 455 ~~~~~~~ 461 (481)
.++++..
T Consensus 213 ~~~~~d~ 219 (466)
T KOG2532|consen 213 FLFYSDS 219 (466)
T ss_pred HHHhcCC
Confidence 6666543
No 53
>PTZ00370 STEVOR; Provisional
Probab=38.20 E-value=55 Score=29.88 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=18.6
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHhc---ChHHHHHHH
Q 011609 431 FHQGVMGIWAGMIFGGTAIQTLILAIITIRC---DWDKEAETA 470 (481)
Q Consensus 431 ~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~ 470 (481)
.++|+....+ +-..+..++++++++|| .||++.++.
T Consensus 255 ~Pygiaalvl----lil~vvliilYiwlyrrRK~swkhe~kkh 293 (296)
T PTZ00370 255 YPYGIAALVL----LILAVVLIILYIWLYRRRKNSWKHECKKH 293 (296)
T ss_pred cccHHHHHHH----HHHHHHHHHHHHHHHHhhcchhHHHHHhh
Confidence 4455544333 33344444455444444 588877664
No 54
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=37.74 E-value=2.1e+02 Score=22.82 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=7.2
Q ss_pred cChHHHHHHHHHh
Q 011609 461 CDWDKEAETANTR 473 (481)
Q Consensus 461 ~~~~~~~~~~~~~ 473 (481)
..+|++.++..++
T Consensus 123 ~~~k~~i~kiN~k 135 (136)
T PF11457_consen 123 LYWKKDIKKINEK 135 (136)
T ss_pred HHHHHHHHHHHhh
Confidence 3566666665543
No 55
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=37.53 E-value=4.4e+02 Score=26.49 Aligned_cols=34 Identities=15% Similarity=-0.063 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cC
Q 011609 39 ESKKLWYIVGPAIFSRLASYSMLVITQAFAGH-LG 72 (481)
Q Consensus 39 ~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg 72 (481)
..|+.+..+.+-+..++...........+... .|
T Consensus 10 s~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~G 44 (467)
T COG2211 10 SLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFG 44 (467)
T ss_pred cHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccC
Confidence 56677888888888877777777776666666 44
No 56
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=37.35 E-value=98 Score=19.35 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 011609 438 IWAGMIFGGTAIQ 450 (481)
Q Consensus 438 ~~~a~~~~~~~i~ 450 (481)
+|.|.. ++.++.
T Consensus 8 VW~sYg-~t~l~l 19 (45)
T TIGR03141 8 VWLAYG-ITALVL 19 (45)
T ss_pred HHHHHH-HHHHHH
Confidence 344444 444443
No 57
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=35.69 E-value=1.7e+02 Score=27.54 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhcCh
Q 011609 446 GTAIQTLILAIITIRCDW 463 (481)
Q Consensus 446 ~~~i~~~~~~~~~~~~~~ 463 (481)
..++..+..+++++|++|
T Consensus 300 ~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 300 VMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 334445556777887777
No 58
>PRK09546 zntB zinc transporter; Reviewed
Probab=35.33 E-value=1.6e+02 Score=27.88 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=21.7
Q ss_pred HhhHHHHHHHHHHh-cCC-c------hhHHHHHHHHHHHHHHHHHHHHHHhcCh
Q 011609 418 LIGVPLGCLMGWVF-HQG-V------MGIWAGMIFGGTAIQTLILAIITIRCDW 463 (481)
Q Consensus 418 ~~~i~~~~~l~~~~-~~g-~------~G~~~a~~~~~~~i~~~~~~~~~~~~~~ 463 (481)
.+.+|+.++.+.+. +++ + +|-++... ..++.++..+++++|++|
T Consensus 272 ~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~--im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 272 MVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCL--LLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHHhhhccccCCCCCcCCcchHHHHHH--HHHHHHHHHHHHHHhccc
Confidence 45557777655331 111 1 23333333 334444556667777777
No 59
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=33.91 E-value=1.8e+02 Score=25.56 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=19.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCC
Q 011609 113 RYYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQ 151 (481)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 151 (481)
+++.....+..++...+++..+.+++..+..++..+++.
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 344444444444444444444444455566666666653
No 60
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=32.15 E-value=5.2e+02 Score=25.71 Aligned_cols=52 Identities=12% Similarity=0.008 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 011609 295 EIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFF 356 (481)
Q Consensus 295 ~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (481)
-.-++.|+....+. .....|.+++...+.++.++-+.....-+.+...+..+
T Consensus 37 Ll~~siygl~~~~~----------~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~ 88 (432)
T PF06963_consen 37 LLPVSIYGLVRSLS----------AILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCAL 88 (432)
T ss_pred cHHHHHHHHHHHHH----------HHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 44455666655543 34567888899887777776665555555555555543
No 61
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=30.65 E-value=8.5e+02 Score=27.74 Aligned_cols=30 Identities=13% Similarity=-0.092 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcchhhHHHHHHHHHHHHHH
Q 011609 175 FQFPLQRFLQSQLKNMVIAWVSLVALLVHI 204 (481)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 204 (481)
...+........++.+...+.+....+..+
T Consensus 129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~ 158 (1140)
T PRK06814 129 KYSILPDHLNKDELLGANALVEAGTFIAIL 158 (1140)
T ss_pred HHHhhHhhcCccccchhhHHHHHHHHHHHH
Confidence 334455556666666666666655544433
No 62
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=30.08 E-value=2.8e+02 Score=26.18 Aligned_cols=65 Identities=9% Similarity=0.133 Sum_probs=29.7
Q ss_pred hhhhhhhc-ccchhhHHHHHHHHHHhhHHHHHHHHHH-hcCC-c------hhHHHHHHHHHHHHHHHHHHHHHHhcCh
Q 011609 395 NSVQPILS-GWQSYVAYINLGCYYLIGVPLGCLMGWV-FHQG-V------MGIWAGMIFGGTAIQTLILAIITIRCDW 463 (481)
Q Consensus 395 ~~~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~l~~~-~~~g-~------~G~~~a~~~~~~~i~~~~~~~~~~~~~~ 463 (481)
+......+ +..+..-..++++ ++..|..++-+.+ .++. + .|.+++.. ..++..++.+++++|++|
T Consensus 242 d~~~~~i~~~~N~~mk~lTv~s--~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~--~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 242 QAAMGFINIEQNRIIKIFSVVS--VVFLPPTLVASSYGMNFEFMPELKWSFGYPGAII--LMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHH--HHHHHHHHHHHHHHHccc
Confidence 34444444 3333444444444 4555666655432 1111 1 23333333 333444456667777777
No 63
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.92 E-value=75 Score=25.05 Aligned_cols=7 Identities=43% Similarity=0.819 Sum_probs=2.9
Q ss_pred hHHHHHH
Q 011609 437 GIWAGMI 443 (481)
Q Consensus 437 G~~~a~~ 443 (481)
|+.++.+
T Consensus 68 ~Ii~gv~ 74 (122)
T PF01102_consen 68 GIIFGVM 74 (122)
T ss_dssp HHHHHHH
T ss_pred ehhHHHH
Confidence 3444444
No 64
>PF14184 YrvL: Regulatory protein YrvL
Probab=29.38 E-value=3e+02 Score=22.09 Aligned_cols=84 Identities=7% Similarity=0.049 Sum_probs=45.6
Q ss_pred HHHhhHHhhhhcCCc-HHHHHHHHHHHHHHHHHHHHhhhhhhhc---ccchhhHHHHHHHHHHhhHHHHHHHHHHhcCCc
Q 011609 360 IMIYHNELALIFSSS-EAVLQAVNKLSILLAFTILLNSVQPILS---GWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGV 435 (481)
Q Consensus 360 l~~~~~~i~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~ 435 (481)
.++...-+.++++-+ +.......-.+....++.+++.+.-.+. ...|.+..........+.....++..+.-..=+
T Consensus 21 ~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~~l~~~id~~~t~~~i~~aD~~m 100 (132)
T PF14184_consen 21 YFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFILLAFIIDFLFTWITIYTADELM 100 (132)
T ss_pred HHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445566666543 3334444445555566666666655444 222444444444444566666666665555566
Q ss_pred hhHHHHHH
Q 011609 436 MGIWAGMI 443 (481)
Q Consensus 436 ~G~~~a~~ 443 (481)
.+++..+.
T Consensus 101 ~sI~is~~ 108 (132)
T PF14184_consen 101 ESISISTL 108 (132)
T ss_pred cceeeCcH
Confidence 67777766
No 65
>COG4267 Predicted membrane protein [Function unknown]
Probab=28.85 E-value=5.5e+02 Score=24.96 Aligned_cols=134 Identities=10% Similarity=0.087 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHH
Q 011609 313 MIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTI 392 (481)
Q Consensus 313 ~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~ 392 (481)
.+..+++....-.+++.+=+||.++......-+..++...+..++..++. ..++.....-.........++.
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~--------~~~~~si~yk~l~~~~FV~m~~ 146 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFF--------VNNQYSIVYKILACALFVGMSL 146 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhh--------hcCchhHHHHHHHHHHHHHHHH
Confidence 45566666666667776666667776666666665555555544432111 1222211111111111111111
Q ss_pred HHhhhhhhhc-ccchhhHHHHHHHHHHhhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011609 393 LLNSVQPILS-GWQSYVAYINLGCYYLIGVPLGCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITI 459 (481)
Q Consensus 393 ~~~~~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~ 459 (481)
....+..... ++.+.......++. .+.+.+++++. +.+..|..++.. ++..+...+...+..
T Consensus 147 ~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~---~~~ie~lLL~~~-IGi~~i~~l~~~~Il 209 (467)
T COG4267 147 VWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFL---KSPIEGLLLTLD-IGIFIILFLLNFYIL 209 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HhHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence 1112211112 55555555555554 77777777765 458899999988 887776665554444
No 66
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=28.32 E-value=3.1e+02 Score=23.26 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=20.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcC
Q 011609 217 GVIGTAATLNFSWWILVFGLFGYVSCG 243 (481)
Q Consensus 217 g~~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (481)
+..|...++.++.++..++...|..+.
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeec
Confidence 445667788888888888877776654
No 67
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=27.10 E-value=4.6e+02 Score=23.53 Aligned_cols=68 Identities=9% Similarity=-0.049 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHhhhhc
Q 011609 304 CMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVVTSVIIGLFF-WLLIMIYHNELALIF 371 (481)
Q Consensus 304 ~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~i~~l~ 371 (481)
...+.+....+...++.......-+...++|.++.++................ ..+...++.+.++-+
T Consensus 102 v~~lg~~l~~~~~~~n~~~~~~adk~ae~gn~~~i~~~~~~~~~~~~~~~~v~~~fl~~~~G~~~v~~~ 170 (238)
T PF03609_consen 102 VGILGQQLDNLLRTINSFFVHRADKAAEEGNYKKINRIHWIGPILFFLIYFVPPVFLAVYFGSDAVQAL 170 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 33444555556667777777777788888899998887666655444444443 555555666655544
No 68
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=26.62 E-value=2.1e+02 Score=27.04 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHH-hcCC------c-hhHHHHHHHHHHHHHHHHHHHHHHhcCh
Q 011609 406 SYVAYINLGCYYLIGVPLGCLMGWV-FHQG------V-MGIWAGMIFGGTAIQTLILAIITIRCDW 463 (481)
Q Consensus 406 ~~~~~~~~~~~~~~~i~~~~~l~~~-~~~g------~-~G~~~a~~~~~~~i~~~~~~~~~~~~~~ 463 (481)
...-..++++ ++.+|..++.+.+ .+++ . +|-|++.. +. ++.+++.+++++|++|
T Consensus 260 ~imk~LTi~s--~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~-~m-~~~~~~~~~~frrk~W 321 (322)
T COG0598 260 EIMKILTIVS--TIFLPPTLITGFYGMNFKGMPELDWPYGYPIALI-LM-LLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHHHHHHH--HHHHhhHHHHcccccCCCCCcCCCCcccHHHHHH-HH-HHHHHHHHHHHHhcCc
Confidence 3333344443 4555666665533 1111 1 24455554 33 4455566777777777
No 69
>PF14184 YrvL: Regulatory protein YrvL
Probab=25.89 E-value=3.5e+02 Score=21.71 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHH
Q 011609 123 RSWIVLFVCCVLLLPLYLFASPVLKLLGQPDD-VAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWVSLVALL 201 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 201 (481)
......+...++.+...+....+++++|.+-| ......-.+.....+.++..+...+...+.-.+-++.. ......+
T Consensus 6 ~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~--~~~l~~~ 83 (132)
T PF14184_consen 6 IFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRL--FILLAFI 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHH--HHHHHHH
Confidence 33444444445555556667777888877643 23333333445566677777666666555554333322 2334456
Q ss_pred HHHHHHHHHHhhhcCCcchhHHH
Q 011609 202 VHIFVSWLFVNRMQLGVIGTAAT 224 (481)
Q Consensus 202 ~~i~l~~~li~~~~~g~~g~a~a 224 (481)
+...+++..++..+.=+.+..+.
T Consensus 84 id~~~t~~~i~~aD~~m~sI~is 106 (132)
T PF14184_consen 84 IDFLFTWITIYTADELMESISIS 106 (132)
T ss_pred HHHHHHHHHHHHHHHHhcceeeC
Confidence 77777887777554434444443
No 70
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=25.21 E-value=5.1e+02 Score=23.34 Aligned_cols=43 Identities=7% Similarity=0.021 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 011609 256 AFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTI 307 (481)
Q Consensus 256 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l 307 (481)
.++..|+.+++++|..+ +.+.+.+......++.. +.|++..+.
T Consensus 10 ~~~~~~~~~~~~vPA~l----Y~~qn~L~~~al~~ld~-----~t~qvl~q~ 52 (244)
T PF04142_consen 10 VWKSPKDTLKLAVPALL----YAIQNNLQFVALSYLDP-----STFQVLSQS 52 (244)
T ss_pred HHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCH-----HHHHHHHhh
Confidence 34567788999999877 55555555555555542 255555443
No 71
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=24.41 E-value=6.2e+02 Score=24.07 Aligned_cols=39 Identities=3% Similarity=0.035 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 011609 175 FQFPLQRFLQSQLKNMVIAWVSLVALLVHIFVSWLFVNR 213 (481)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~ 213 (481)
+..-+...-+..++.|.....-....++.-.+.+.+...
T Consensus 66 ~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm~~la~~ 104 (342)
T COG0798 66 LKIDFEELKNVFKDPKPLILSLFVNWIIGPLLMFALAWF 104 (342)
T ss_pred hcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333467777888887777666666666666666665553
No 72
>PRK10739 putative antibiotic transporter; Provisional
Probab=22.94 E-value=5e+02 Score=22.50 Aligned_cols=58 Identities=7% Similarity=0.067 Sum_probs=36.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHH
Q 011609 323 GVRVANELGAGNGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKL 384 (481)
Q Consensus 323 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~ 384 (481)
.|..-..-++.++++-++..++.......+.+ ++.+.++.+.++|+-+-+..+.+-.+
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~~~a~~ill----~f~~~G~~iL~~fGIsl~afrIAGGi 78 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIRELLIALLVML----VFLFAGEKILAFLNLRTETVSISGGI 78 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34444444455666666676666655554444 67888999999998765545544443
No 73
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.38 E-value=75 Score=28.97 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhc---ChHHH
Q 011609 424 GCLMGWVFHQGVMGIWAGMIFGGTAIQTLILAIITIRC---DWDKE 466 (481)
Q Consensus 424 ~~~l~~~~~~g~~G~~~a~~~~~~~i~~~~~~~~~~~~---~~~~~ 466 (481)
....+...++|+....+ +-..+..++++++++|| .||++
T Consensus 252 taA~aaF~Pcgiaalvl----lil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 252 SAATSTFLPYGIAALVL----IILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred HHHHHhhcccHHHHHHH----HHHHHHHHHHHHHHHHhhccccccc
Confidence 33333334455544433 33344445555554444 57765
No 74
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=22.19 E-value=6.9e+02 Score=23.84 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=24.0
Q ss_pred CCCHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 011609 251 GFTLEAFSGLWQFVKLSAASGVMLCLENWYYRILISMTGNLQ 292 (481)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 292 (481)
..++..+...++.+|.++|..+ ..+.+++..+-.+++.
T Consensus 80 ~l~~~i~~~~~~~lk~~vPa~i----YalqNnl~yval~~ld 117 (345)
T KOG2234|consen 80 SLSKEILAAPRETLKVSVPALI----YALQNNLQYVALSNLD 117 (345)
T ss_pred hcCHHHHhChHHHHHHHHHHHH----HHHhhhHHHHHHhcCC
Confidence 3344445566799999999876 4444555555555554
No 75
>PRK03612 spermidine synthase; Provisional
Probab=21.14 E-value=9e+02 Score=24.75 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-cChhHHH
Q 011609 50 AIFSRLASYSMLVITQAFAGH-LGDIELA 77 (481)
Q Consensus 50 ~~~~~~~~~l~~~i~~~~i~~-lg~~~~~ 77 (481)
.+++.+...++..+-.-+++. +|...+.
T Consensus 23 ~f~sg~~~L~yEv~~~r~l~~~~G~s~~~ 51 (521)
T PRK03612 23 VFVCAACGLVYELLLGTLASYLLGDSVTQ 51 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 345555666666666666665 4654433
No 76
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=20.81 E-value=4.2e+02 Score=20.76 Aligned_cols=117 Identities=12% Similarity=-0.027 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc----ccchhhHHHHHHH
Q 011609 340 FATIVSVVTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS----GWQSYVAYINLGC 415 (481)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~ 415 (481)
+..|..+.++.+..+..++...+.+..........+.......+.++.+.-..+-.++..... ++.+........
T Consensus 2 ~~~~~~l~~~~l~~~~~Gl~~~~~p~~~~~~~~~~~~~~~~~~s~~R~~~G~~~g~Gl~~l~~~~~~~~~~~al~~l~~- 80 (124)
T PF14248_consen 2 RILRIFLILSALVFIGIGLAYFLAPSSTAPWFGGVLANAAALDSEFRAYGGLYLGLGLLLLWAAFKPEYRRPALRLLAL- 80 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHH-
Confidence 455667777777778888888888888887764322112223344455444444444444444 222222222222
Q ss_pred HHHhhHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHh
Q 011609 416 YYLIGVPLGCLMGWVFHQGVM-GIWAGMIFGGTAIQTLILAIITIR 460 (481)
Q Consensus 416 ~~~~~i~~~~~l~~~~~~g~~-G~~~a~~~~~~~i~~~~~~~~~~~ 460 (481)
......++=++....+ |.. ...+... +.|++...+.++..+|
T Consensus 81 -~~~~~~lgRlis~~~d-G~p~~~~~~~l-~~Elv~~~l~~~~l~~ 123 (124)
T PF14248_consen 81 -FIGGGGLGRLISLALD-GPPSPFLWVAL-IFELVLAPLLLWWLRR 123 (124)
T ss_pred -HHHHHHHHHHHHHHHc-CCCchHHHHHH-HHHHHHHHHHHHHHHh
Confidence 1333334433332222 332 2223444 5666666666655543
Done!