Query 011609
Match_columns 481
No_of_seqs 260 out of 1887
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 11:41:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.3E-47 4.3E-52 382.9 32.6 425 34-462 5-447 (460)
2 3mkt_A Multi antimicrobial ext 99.8 7.4E-20 2.5E-24 182.0 19.2 206 37-243 234-446 (460)
3 4aps_A DI-OR tripeptide H+ sym 84.6 29 0.001 33.2 25.3 21 431-452 446-466 (491)
4 1pw4_A Glycerol-3-phosphate tr 82.4 33 0.0011 32.3 38.3 22 431-453 408-429 (451)
5 3o7q_A L-fucose-proton symport 61.8 1E+02 0.0035 28.6 30.2 38 43-80 28-67 (438)
6 4ev6_A Magnesium transport pro 41.8 59 0.002 29.7 7.1 53 407-463 278-338 (339)
7 2knc_B Integrin beta-3; transm 41.3 61 0.0021 22.3 5.3 22 434-456 9-30 (79)
8 4hkr_A Calcium release-activat 30.6 2.3E+02 0.0079 23.4 10.8 97 298-394 60-164 (214)
9 2k1k_A Ephrin type-A receptor 17.9 1.4E+02 0.0047 17.2 3.1 9 220-228 15-23 (38)
10 2iub_A CORA, divalent cation t 16.3 92 0.0031 28.7 3.3 16 448-463 347-362 (363)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.3e-47 Score=382.92 Aligned_cols=425 Identities=19% Similarity=0.328 Sum_probs=385.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccc
Q 011609 34 RTIWVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKR 113 (481)
Q Consensus 34 ~~~~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~ 113 (481)
...++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++..+ ...+..|++.+..+.++++.|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3456789999999999999999999999999999999999999999999999777 677889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHH
Q 011609 114 YYMLGVYMQRSWIVLFVCCVLLLPLYLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIA 193 (481)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (481)
+++.++.+++++.+..+.+++..+++.+.++++.+++.+++..+.+..|+++++++.++..+....++.+|+.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999988877667888999888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-h---cCCcchhHHHHHHHHHHHHHHHHHHHhcCCcCCc---CCCCCHHhhhhHHHHHHH
Q 011609 194 WVSLVALLVHIFVSWLFVNR-M---QLGVIGTAATLNFSWWILVFGLFGYVSCGGCPLT---WTGFTLEAFSGLWQFVKL 266 (481)
Q Consensus 194 ~~~~~~~~~~i~l~~~li~~-~---~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 266 (481)
..++++.++|+++++++++. + ++|+.|+++|+.+++.+..++..+++++++...+ ++++...+++..|+++++
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999975 3 6899999999999999999988888776532221 122223345678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 011609 267 SAASGVMLCLENWYYRILISMTGNLQNAEIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSV 346 (481)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~~~~~~~~~~~~~ 346 (481)
+.|..++++.+.+.+.+++.+++++| +.++|+|+++.++.++..++..+++++..|.+++++|++|+|+.++..+++.
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~ 321 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL 321 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999996 7789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhc------ccchhhHHHHHHHHHHhh
Q 011609 347 VTSVIIGLFFWLLIMIYHNELALIFSSSEAVLQAVNKLSILLAFTILLNSVQPILS------GWQSYVAYINLGCYYLIG 420 (481)
Q Consensus 347 ~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~ 420 (481)
+++..++++.+++++++++++..+|++|++..+.+..++++++++.++++++.... ||+|.+++.++++.|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 401 (460)
T 3mkt_A 322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG 401 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888889999999999999998877655 999999999999999999
Q ss_pred HHHHHHHHHH----hc-CCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011609 421 VPLGCLMGWV----FH-QGVMGIWAGMIFGGTAIQTLILAIITIRCD 462 (481)
Q Consensus 421 i~~~~~l~~~----~~-~g~~G~~~a~~~~~~~i~~~~~~~~~~~~~ 462 (481)
+|+++++... ++ +|..|+|+++. +++.+..++..++++|+.
T Consensus 402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~-~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 402 LPTGYILGMTNWLTEQPLGAKGFWLGFI-IGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHHTSSCCSSHHHHHHHHHH-HHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHHhhhhccccccCchhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999944 34 99999999999 999999887776665543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.84 E-value=7.4e-20 Score=181.99 Aligned_cols=206 Identities=14% Similarity=0.085 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhcccccch
Q 011609 37 WVESKKLWYIVGPAIFSRLASYSMLVITQAFAGHLGDIELAAISIANNVIVGFDFGLLLGMASALETLCGQAFGAKRYYM 116 (481)
Q Consensus 37 ~~~~~~l~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 116 (481)
++..|++++.++|.+++++...+...+|+.+++++|++++|+|++++++.++ ...+..+++++..|.+++.+|++|+++
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~-~~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSL-VFMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 3467889999999999999999999999999999999999999999999998 678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcchhhHHHHH
Q 011609 117 LGVYMQRSWIVLFVCCVLLLPL-YLFASPVLKLLGQPDDVAELSGMVSIWMIPLHFSFAFQFPLQRFLQSQLKNMVIAWV 195 (481)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (481)
.++..+.+..+...++++.+++ +.+.+++..++..|++..+.+..++++.+++.++.+++.+..+.+++.||++.+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999888865 789999999998888888899999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHhh----hc-CCcchhHHHHHHHHHHHHHHHHHHHhcC
Q 011609 196 SLVAL-LVHIFVSWLFVNR----MQ-LGVIGTAATLNFSWWILVFGLFGYVSCG 243 (481)
Q Consensus 196 ~~~~~-~~~i~l~~~li~~----~~-~g~~g~a~a~~i~~~i~~~~~~~~~~~~ 243 (481)
++++. ++++++++++.+. .+ +|..|+++|+.+++.+..++..+.++|+
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 9999999999976 55 8999999999999999888776655543
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=84.56 E-value=29 Score=33.25 Aligned_cols=21 Identities=5% Similarity=0.039 Sum_probs=9.0
Q ss_pred hcCCchhHHHHHHHHHHHHHHH
Q 011609 431 FHQGVMGIWAGMIFGGTAIQTL 452 (481)
Q Consensus 431 ~~~g~~G~~~a~~~~~~~i~~~ 452 (481)
.+.+....+.... ...++..+
T Consensus 446 ~~~~~~~~~~~~~-~~~~~~~~ 466 (491)
T 4aps_A 446 NAKSEVAYFSYFG-LGSVVLGI 466 (491)
T ss_dssp GGSSTTHHHHHTH-HHHHHHHH
T ss_pred hcccHHHHHHHHH-HHHHHHHH
Confidence 3445444444444 33333333
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=82.40 E-value=33 Score=32.26 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=11.7
Q ss_pred hcCCchhHHHHHHHHHHHHHHHH
Q 011609 431 FHQGVMGIWAGMIFGGTAIQTLI 453 (481)
Q Consensus 431 ~~~g~~G~~~a~~~~~~~i~~~~ 453 (481)
...|....++... +..++..++
T Consensus 408 ~~~g~~~~~~~~~-~~~~~~~~~ 429 (451)
T 1pw4_A 408 DFFGWDGGFMVMI-GGSILAVIL 429 (451)
T ss_dssp HSSCSHHHHHHHH-HHHHHHHHH
T ss_pred HhcCcHHHHHHHH-HHHHHHHHH
Confidence 4457666666555 444444443
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=61.81 E-value=1e+02 Score=28.61 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ChhHHHHHH
Q 011609 43 LWYIVGPAIFSRLASYSMLVITQAFAGHL--GDIELAAIS 80 (481)
Q Consensus 43 l~~~~~p~~~~~~~~~l~~~i~~~~i~~l--g~~~~~~~~ 80 (481)
+.-...-.++..+...........+..++ ++.+.+...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 67 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQ 67 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34444444444444444444444455555 444544443
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=41.81 E-value=59 Score=29.68 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHH-------hcCC-chhHHHHHHHHHHHHHHHHHHHHHHhcCh
Q 011609 407 YVAYINLGCYYLIGVPLGCLMGWV-------FHQG-VMGIWAGMIFGGTAIQTLILAIITIRCDW 463 (481)
Q Consensus 407 ~~~~~~~~~~~~~~i~~~~~l~~~-------~~~g-~~G~~~a~~~~~~~i~~~~~~~~~~~~~~ 463 (481)
..-..++++ ++.+|+.++-+.+ |..+ -.|-|++.. ..++.++..+++++|++|
T Consensus 278 ~mk~LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~--~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 278 IMKILTMVT--TIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMA--LMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHH--HHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHH--HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHH--HHHHHHHHHHhhccCcCCCCCCccCchHHHHHHH--HHHHHHHHHHHHHHHcCC
Confidence 333444444 5666777776643 1111 134444444 344555666777777777
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=41.29 E-value=61 Score=22.30 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=9.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 011609 434 GVMGIWAGMIFGGTAIQTLILAI 456 (481)
Q Consensus 434 g~~G~~~a~~~~~~~i~~~~~~~ 456 (481)
.+.++..+.. .+-++..++.+.
T Consensus 9 n~~~Iv~gvi-~gilliGlllll 30 (79)
T 2knc_B 9 DILVVLLSVM-GAILLIGLAALL 30 (79)
T ss_dssp CSHHHHHHHH-HHHHHHHHHHHH
T ss_pred CchhhHHHHH-HHHHHHHHHHHH
Confidence 3444444444 444444443333
No 8
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=30.60 E-value=2.3e+02 Score=23.42 Aligned_cols=97 Identities=15% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 011609 298 VDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGN--------GKGAKFATIVSVVTSVIIGLFFWLLIMIYHNELAL 369 (481)
Q Consensus 298 ~a~~~~~~~l~~~~~~~~~~~~~a~~p~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~ 369 (481)
+.+|++...+.-....++.-+++-..|.+-..-+..+ +++.+.+.-.+..++..+++++.+.-+...-|+--
T Consensus 60 Li~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~WVKF 139 (214)
T 4hkr_A 60 LIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILCWVKF 139 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheEEe
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHHHH
Q 011609 370 IFSSSEAVLQAVNKLSILLAFTILL 394 (481)
Q Consensus 370 l~~~~~~~~~~~~~~l~~~~~~~~~ 394 (481)
.=.+++........+++...++..|
T Consensus 140 ~~~~~~aa~~~t~vliPv~i~F~~F 164 (214)
T 4hkr_A 140 YDLSRRAAWSATVVLIPVMIIFMAF 164 (214)
T ss_dssp TTTCHHHHHHHHHHTHHHHHHHHHH
T ss_pred ecCCcHHHHHHHHHHHHHHHHHHHH
No 9
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=17.94 E-value=1.4e+02 Score=17.17 Aligned_cols=9 Identities=11% Similarity=-0.009 Sum_probs=3.5
Q ss_pred hhHHHHHHH
Q 011609 220 GTAATLNFS 228 (481)
Q Consensus 220 g~a~a~~i~ 228 (481)
|..++.+++
T Consensus 15 GiVvG~v~g 23 (38)
T 2k1k_A 15 AVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHH
T ss_pred eeehHHHHH
Confidence 333444333
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=16.25 E-value=92 Score=28.69 Aligned_cols=16 Identities=13% Similarity=0.495 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhcCh
Q 011609 448 AIQTLILAIITIRCDW 463 (481)
Q Consensus 448 ~i~~~~~~~~~~~~~~ 463 (481)
++.++..+++++|++|
T Consensus 347 ~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 347 GVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHccc
Confidence 3444556666777777
Done!