Query 011609
Match_columns 481
No_of_seqs 260 out of 1887
Neff 10.4
Searched_HMMs 13730
Date Mon Mar 25 11:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011609.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011609hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkzb_ f.3.1.1 (B:) Light-har 9.9 1.4E+02 0.01 15.9 4.1 34 334-367 7-40 (41)
2 d1lghb_ f.3.1.1 (B:) Light-har 7.6 1.3E+02 0.0097 16.4 2.2 31 335-365 11-41 (43)
3 d2oara1 f.16.1.1 (A:10-118) Ga 6.0 1.5E+02 0.011 20.0 2.4 15 437-452 61-75 (109)
4 d1m56d_ f.23.8.1 (D:) Bacteria 5.3 2.6E+02 0.019 15.0 4.2 31 330-360 4-34 (42)
5 d1otsa_ f.20.1.1 (A:) Clc chlo 5.0 2.8E+02 0.021 23.8 4.3 16 462-477 428-443 (444)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 4.8 7.6E+02 0.055 19.8 44.4 26 431-457 405-430 (447)
7 d1ijdb_ f.3.1.1 (B:) Light-har 4.1 3.2E+02 0.023 14.3 4.0 31 334-364 8-38 (40)
8 d1jo5a_ f.3.1.1 (A:) Light-har 3.0 2.3E+02 0.017 15.8 1.0 31 335-365 16-46 (48)
9 d1ppjd2 f.23.11.1 (D:196-241) 2.7 5E+02 0.037 14.1 2.5 14 452-465 21-34 (46)
10 d2g7oa1 a.241.1.1 (A:60-127) T 2.4 5.5E+02 0.04 14.8 2.3 18 460-477 40-57 (68)
No 1
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=9.91 E-value=1.4e+02 Score=15.86 Aligned_cols=34 Identities=12% Similarity=-0.046 Sum_probs=24.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 011609 334 NGKGAKFATIVSVVTSVIIGLFFWLLIMIYHNEL 367 (481)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i 367 (481)
+.|+..+......+....+.++.=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4577788888888888888877766666665553
No 2
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=7.60 E-value=1.3e+02 Score=16.39 Aligned_cols=31 Identities=6% Similarity=0.110 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 011609 335 GKGAKFATIVSVVTSVIIGLFFWLLIMIYHN 365 (481)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (481)
-++..+.+..++..-..++++.=++.+...|
T Consensus 11 A~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 11 AIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555566666666555555555444444433
No 3
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.01 E-value=1.5e+02 Score=19.97 Aligned_cols=15 Identities=0% Similarity=-0.099 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 011609 437 GIWAGMIFGGTAIQTL 452 (481)
Q Consensus 437 G~~~a~~~~~~~i~~~ 452 (481)
|.++... +.+++...
T Consensus 61 G~fi~a~-InFlIiA~ 75 (109)
T d2oara1 61 NVLLSAA-INFFLIAF 75 (109)
T ss_dssp HHHHHHH-HHHHHHHH
T ss_pred HHHHHHH-HHHHHHHH
Confidence 4455555 55444444
No 4
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.29 E-value=2.6e+02 Score=14.97 Aligned_cols=31 Identities=6% Similarity=-0.132 Sum_probs=16.1
Q ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011609 330 LGAGNGKGAKFATIVSVVTSVIIGLFFWLLI 360 (481)
Q Consensus 330 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 360 (481)
.|+-|.+...+.+.--++++.-.++....++
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i~~l 34 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIVAAL 34 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666555555554444433333
No 5
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=5.01 E-value=2.8e+02 Score=23.84 Aligned_cols=16 Identities=0% Similarity=-0.180 Sum_probs=8.3
Q ss_pred ChHHHHHHHHHhhhhh
Q 011609 462 DWDKEAETANTRVRKW 477 (481)
Q Consensus 462 ~~~~~~~~~~~~~~~~ 477 (481)
-|+...++..+++|+|
T Consensus 428 iY~~~l~~~~~~~~~~ 443 (444)
T d1otsa_ 428 LYSAILARTLAKQEAE 443 (444)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhhhcc
Confidence 3665555555444444
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.83 E-value=7.6e+02 Score=19.81 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=14.7
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHH
Q 011609 431 FHQGVMGIWAGMIFGGTAIQTLILAII 457 (481)
Q Consensus 431 ~~~g~~G~~~a~~~~~~~i~~~~~~~~ 457 (481)
..+|..+..+... ...++..++....
T Consensus 405 ~~~g~~~~~~~~~-~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 405 DFFGWDGGFMVMI-GGSILAVILLIVV 430 (447)
T ss_dssp HSSCSHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHH-HHHHHHHHHHHHH
Confidence 4677777666665 5555554444333
No 7
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=4.09 E-value=3.2e+02 Score=14.31 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=20.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011609 334 NGKGAKFATIVSVVTSVIIGLFFWLLIMIYH 364 (481)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (481)
+.|+..+......+.-..+.++.=++.+...
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~t 38 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLT 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Confidence 4577777888888877777776555554443
No 8
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.02 E-value=2.3e+02 Score=15.82 Aligned_cols=31 Identities=6% Similarity=0.089 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 011609 335 GKGAKFATIVSVVTSVIIGLFFWLLIMIYHN 365 (481)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 365 (481)
-++..+.+..++..-..++++.=++.+...|
T Consensus 16 A~E~H~~~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 16 AQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455555555555555555554444444443
No 9
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.69 E-value=5e+02 Score=14.10 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=7.2
Q ss_pred HHHHHHHHhcChHH
Q 011609 452 LILAIITIRCDWDK 465 (481)
Q Consensus 452 ~~~~~~~~~~~~~~ 465 (481)
....++.+++.|..
T Consensus 21 ~~l~yy~KR~~Ws~ 34 (46)
T d1ppjd2 21 LPLVYAMKRHKWSV 34 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 33445555556653
No 10
>d2g7oa1 a.241.1.1 (A:60-127) TraM {Escherichia coli [TaxId: 562]}
Probab=2.42 E-value=5.5e+02 Score=14.85 Aligned_cols=18 Identities=11% Similarity=0.224 Sum_probs=0.0
Q ss_pred hcChHHHHHHHHHhhhhh
Q 011609 460 RCDWDKEAETANTRVRKW 477 (481)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~ 477 (481)
|..|+...++.+++++.|
T Consensus 40 kfe~~~mv~~I~e~vs~~ 57 (68)
T d2g7oa1 40 KFEYANMVEDIREKVSSE 57 (68)
T ss_dssp GGCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHH
Done!