BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011610
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I0Z|A Chain A, Crystal Structure Of A Fad Binding Protein From Bacillus
Cereus, A Putative Nad(Fad)-Utilizing Dehydrogenases
Length = 447
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 136/418 (32%), Positives = 213/418 (50%), Gaps = 52/418 (12%)
Query: 77 NVVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDT 135
NV++++KG L K+ ISGGGRCNVTN D+++ H P G+ F S FS+ D
Sbjct: 51 NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIV--KHIP-GNGRFLYSAFSIFNNEDI 107
Query: 136 MSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGR 195
+++F + GV+LK ED GR+FPVS+ + SV+D LLT K GV ++T V T +N
Sbjct: 108 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQT 167
Query: 196 KFLLKVEKRTMNLVECIEADYLLIA--------SGSSQQGHRLAAQLGHSIVDPVPSLFT 247
K ++ + E +E ++++IA +GS+ G+ A + GH+I + P
Sbjct: 168 KAVI------LQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELFP---- 217
Query: 248 FKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGP-----------MLVTHWGLS 296
TE+ +S + L+ + L+ + P ML TH+GLS
Sbjct: 218 --------TEVPILSNEPFIRDRSLQGLALRDINLSVLNPKGKAIISHKMDMLFTHFGLS 269
Query: 297 GPVILRLSAWGARYL--FSSCYKGMLTVDFVPDLHIEDM-QSILSQHKIRFAK--QKVLN 351
GP LR S + + L F + M ++D +P+ + E + Q +L Q K K + VL
Sbjct: 270 GPAALRCSQFVVKALKKFKTNTIQM-SIDALPEENSEQLFQRMLKQMKEDPKKGIKNVLK 328
Query: 352 SCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEF 411
PE R++ ++L + + G VS+ + ++ + K T+ V G + F
Sbjct: 329 GYVPE-----RYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEFTVNVNGTQSIEKAF 383
Query: 412 VTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGK 469
VT GGV + EI+ M SK L+F GEVL++ G TGG+N +A G IAGT+ G+
Sbjct: 384 VTGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGE 441
>pdb|3V76|A Chain A, The Crystal Structure Of A Flavoprotein From Sinorhizobium
Meliloti
Length = 417
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 190/405 (46%), Gaps = 53/405 (13%)
Query: 77 NVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDT 135
V++I+ + P K++ISGGGRCN TN H + + L+G+ F S + + P D
Sbjct: 52 RVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGN-----PHFCKSALARYRPQDF 106
Query: 136 MSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQ----TGKVVTTASSD 191
++ HG+ + G++F S+ +I L E K GV L+ G+V TAS
Sbjct: 107 VALVERHGIGWHEKTLGQLF-CDHSAKDIIRXLXAEXKEAGVQLRLETSIGEVERTASG- 164
Query: 192 NAGRKFLLKVEKRTMNLVECIEADYLLIASG--------SSQQGHRLAAQLGHSIVDPVP 243
R ++A L++ASG ++ +R+A Q G +V+ P
Sbjct: 165 -----------FRVTTSAGTVDAASLVVASGGKSIPKXGATGLAYRIAEQFGLPVVETRP 213
Query: 244 SLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRL 303
+L + +QL +L ++ A+ + +L+TH GLSGP IL++
Sbjct: 214 ALVPLTLDQAQLAKLGALAGVAADAEARFGKAAFREA-------VLITHRGLSGPAILQI 266
Query: 304 SAWGARYLFSSCYKGM-LTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKR 362
S++ +G + + PD+ D+ SIL + +Q V + L +R
Sbjct: 267 SSY--------WREGEEIVLRLXPDI---DIASILKGXRRANGRQAVQTALAD--ILPRR 313
Query: 363 FWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEI 422
++ L+G L A +S+ ++ ++A ++ ++ AG ++ VT GGV +
Sbjct: 314 LAQFFADEAKLTGRXL-ADLSDKTIDALASSIQVWAVKPAGSEGYRTAEVTLGGVDTRAL 372
Query: 423 SLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSI 467
T ++K P L+F GE ++V G GG+NFQ AW+ G++AG +
Sbjct: 373 DSRTXQAKEVPGLYFVGECVDVTGWLGGYNFQWAWASGFVAGQDV 417
>pdb|2GQF|A Chain A, Crystal Structure Of Flavoprotein Hi0933 From Haemophilus
Influenzae Rd
Length = 401
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/400 (25%), Positives = 180/400 (45%), Gaps = 35/400 (8%)
Query: 77 NVVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDT 135
+V + + GK + K+ SGGG CN TN + HY + F S + + D
Sbjct: 29 SVTVFDNGKKIGRKILXSGGGFCNFTNLE-----VTPAHYLSQNPHFVKSALARYTNWDF 83
Query: 136 MSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRG--VVLQTGKVVTTASSDNA 193
+S ++ G+ ++ G++F + + +++ L +E G ++L++ ++
Sbjct: 84 ISLVAEQGITYHEKELGQLF-CDEGAEQIVEXLKSECDKYGAKILLRSEVSQVERIQNDE 142
Query: 194 GRKFLLKVEKRTMNLVECIEADYLLIASG--SSQQGHRLAAQLGHSIVDPVPSL--FTFK 249
+F+L+V I A L G ++ G+++A Q G ++ P SL FT++
Sbjct: 143 KVRFVLQVNSTQWQCKNLIVATGGLSXPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYR 202
Query: 250 IADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGAR 309
D LT LSG+S P + L + Q +L TH G+SGP +L++S +
Sbjct: 203 ETDKFLTALSGISLPVTITALC------GKSFYNQ---LLFTHRGISGPAVLQISNYWQP 253
Query: 310 YLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILG 369
+ +D +P+ ++E+ + Q + + +L P+ + W
Sbjct: 254 -------TESVEIDLLPNHNVEEEINQAKQSSPKQXLKTILVRLLPKKLV--ELWI---- 300
Query: 370 REGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMES 429
+G+ D + A++S + ++ + H G ++ VT GGV IS T ES
Sbjct: 301 EQGIVQDEVIANISKVRVKNLVDFIHHWEFTPNGTEGYRTAEVTXGGVDTKVISSKTXES 360
Query: 430 KIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGK 469
L+F GEVL+V G GG+NFQ AWS Y SI +
Sbjct: 361 NQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR 400
>pdb|3G05|A Chain A, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
pdb|3G05|B Chain B, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
Length = 576
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 6/48 (12%)
Query: 426 TMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSND 473
T+ESK LFFAG+ ++G TG ++ A + G +AG + +LS+D
Sbjct: 382 TLESKFIQGLFFAGQ---INGTTG---YEEAAAQGLLAGLNAARLSDD 423
>pdb|3CES|A Chain A, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|B Chain B, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|C Chain C, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|D Chain D, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
Length = 651
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Query: 426 TMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSND 473
T+ESK LFFAG+ ++G TG ++ A + G +AG + +LS D
Sbjct: 378 TLESKFIQGLFFAGQ---INGTTG---YEEAAAQGLLAGLNAARLSAD 419
>pdb|3CP2|A Chain A, Crystal Structure Of Gida From E. Coli
Length = 649
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Query: 426 TMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSND 473
T+ESK LFFAG+ ++G TG ++ A + G +AG + +LS D
Sbjct: 376 TLESKFIQGLFFAGQ---INGTTG---YEEAAAQGLLAGLNAARLSAD 417
>pdb|1QHF|A Chain A, Yeast Phosphoglycerate Mutase-3pg Complex Structure To 1.7
A
pdb|1QHF|B Chain B, Yeast Phosphoglycerate Mutase-3pg Complex Structure To 1.7
A
Length = 240
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVV--- 178
+R SF P+D S FS G E D V P ++S + VID LL + V+
Sbjct: 112 YRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLL--PYWQDVIAKD 169
Query: 179 LQTGKVVTTASSDNAGRKFLLKVE 202
L +GK V A+ N+ R + +E
Sbjct: 170 LLSGKTVMIAAHGNSLRGLVKHLE 193
>pdb|4PGM|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|1BQ3|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ4|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|5PGM|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|F Chain F, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|G Chain G, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|H Chain H, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|E Chain E, Saccharomyces Cerevisiae Phosphoglycerate Mutase
Length = 246
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVV--- 178
+R SF P+D S FS G E D V P ++S + VID LL + V+
Sbjct: 112 YRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLL--PYWQDVIAKD 169
Query: 179 LQTGKVVTTASSDNAGRKFLLKVE 202
L +GK V A+ N+ R + +E
Sbjct: 170 LLSGKTVMIAAHGNSLRGLVKHLE 193
>pdb|1V2B|A Chain A, Crystal Structure Of Psbp Protein In The Oxygen-Evolving
Complex Of Photosystem Ii From Higher Plants
pdb|1V2B|B Chain B, Crystal Structure Of Psbp Protein In The Oxygen-Evolving
Complex Of Photosystem Ii From Higher Plants
Length = 177
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 366 YILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGK 404
Y+LGR+ SG T + ++IA +L+ T EV GK
Sbjct: 77 YLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGK 115
>pdb|2JZX|A Chain A, Pcbp2 Kh1-Kh2 Domains
Length = 160
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 67 IRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMI-LAG 113
IR ++ +I +KG+ + K++ G R N++ G+C +++I LAG
Sbjct: 7 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAG 54
>pdb|2AXY|A Chain A, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2AXY|B Chain B, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2AXY|C Chain C, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2AXY|D Chain D, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2PQU|A Chain A, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PQU|B Chain B, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PQU|C Chain C, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PQU|D Chain D, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PY9|A Chain A, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
pdb|2PY9|B Chain B, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
pdb|2PY9|C Chain C, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
pdb|2PY9|D Chain D, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
Length = 73
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 67 IRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMI-LAG 113
IR ++ +I +KG+ + K + G R N++ G+C +++I LAG
Sbjct: 7 IRLLXHGKEVGSIIGKKGESVKKXREESGARINISEGNCPERIITLAG 54
>pdb|1ZTG|A Chain A, Human Alpha Polyc Binding Protein Kh1
pdb|1ZTG|B Chain B, Human Alpha Polyc Binding Protein Kh1
pdb|1ZTG|C Chain C, Human Alpha Polyc Binding Protein Kh1
pdb|1ZTG|D Chain D, Human Alpha Polyc Binding Protein Kh1
Length = 74
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 67 IRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMI 110
IR ++ +I +KG+ + +++ G R N++ G+C +++I
Sbjct: 5 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERII 48
>pdb|3QO2|A Chain A, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|B Chain B, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|C Chain C, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|D Chain D, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
Length = 64
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 300 ILRLSAWGARYLFSSCYKGMLTVD--FVPDLHIEDMQSILSQHKIRFAKQK 348
IL + G + L+ +KG + D + P++H+ED + +L + + + A+ K
Sbjct: 12 ILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAENK 62
>pdb|3LWE|A Chain A, The Crystal Structure Of Mpp8
pdb|3LWE|B Chain B, The Crystal Structure Of Mpp8
pdb|3R93|A Chain A, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|B Chain B, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|C Chain C, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|D Chain D, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3SVM|A Chain A, Human Mpp8 - Human Dnmt3ak47me2 Peptide
Length = 62
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 300 ILRLSAWGARYLFSSCYKGMLTVD--FVPDLHIEDMQSILSQHKIRFAKQK 348
IL + G + L+ +KG + D + P++H+ED + +L + + + A+ K
Sbjct: 10 ILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAENK 60
>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein
pdb|3ZYY|Y Chain Y, Reductive Activator For Corrinoid,Iron-Sulfur Protein
Length = 631
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTT 187
++ G ++ +S S+ G+++K + G + PV S +ID LL K G++ ++GK+ T
Sbjct: 414 AMQGAIERVS-ISEAGLKVKYQTVGGIPPVGICGSGLID-LLANLKRAGIIDRSGKIDRT 471
Query: 188 ASSD 191
+ +
Sbjct: 472 VNKE 475
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,200,401
Number of Sequences: 62578
Number of extensions: 516945
Number of successful extensions: 1165
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1144
Number of HSP's gapped (non-prelim): 19
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)