Query 011610
Match_columns 481
No_of_seqs 330 out of 2974
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:16:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2081 Predicted flavoprotein 100.0 3.9E-92 8.4E-97 687.5 36.2 397 49-471 2-407 (408)
2 PF03486 HI0933_like: HI0933-l 100.0 6.9E-92 1.5E-96 716.5 28.5 397 51-466 1-409 (409)
3 TIGR00275 flavoprotein, HI0933 100.0 3.4E-79 7.4E-84 628.5 39.8 391 54-465 1-400 (400)
4 TIGR03862 flavo_PP4765 unchara 100.0 3E-76 6.5E-81 591.7 35.8 364 75-471 1-375 (376)
5 PRK08274 tricarballylate dehyd 100.0 9.6E-27 2.1E-31 244.9 25.1 375 49-473 3-463 (466)
6 PRK05945 sdhA succinate dehydr 99.9 3.2E-24 6.9E-29 230.5 34.6 356 50-472 3-414 (575)
7 PRK07803 sdhA succinate dehydr 99.9 4.1E-24 8.8E-29 231.2 33.1 188 49-242 7-244 (626)
8 TIGR01176 fum_red_Fp fumarate 99.9 1.2E-23 2.6E-28 225.5 33.7 354 49-473 2-415 (580)
9 PRK06481 fumarate reductase fl 99.9 1.7E-24 3.8E-29 229.3 27.0 379 46-472 57-504 (506)
10 PLN00128 Succinate dehydrogena 99.9 2E-23 4.3E-28 225.4 35.3 358 47-472 47-467 (635)
11 PRK09231 fumarate reductase fl 99.9 1E-23 2.2E-28 226.5 32.6 354 49-472 3-415 (582)
12 PTZ00139 Succinate dehydrogena 99.9 2.2E-23 4.7E-28 225.1 34.1 359 47-472 26-446 (617)
13 TIGR01812 sdhA_frdA_Gneg succi 99.9 4.1E-23 8.9E-28 222.2 34.0 351 52-472 1-403 (566)
14 PRK06263 sdhA succinate dehydr 99.9 3.3E-23 7.1E-28 221.5 32.8 352 49-472 6-404 (543)
15 PRK06452 sdhA succinate dehydr 99.9 5.1E-23 1.1E-27 220.5 33.8 352 49-472 4-404 (566)
16 PRK06069 sdhA succinate dehydr 99.9 1.2E-22 2.5E-27 218.7 35.7 355 49-472 4-415 (577)
17 PRK09078 sdhA succinate dehydr 99.9 6.1E-23 1.3E-27 221.2 32.9 356 48-472 10-429 (598)
18 PRK08626 fumarate reductase fl 99.9 1.2E-22 2.5E-27 220.5 33.0 352 49-473 4-431 (657)
19 PRK07057 sdhA succinate dehydr 99.9 1.6E-22 3.5E-27 217.6 33.4 355 48-472 10-427 (591)
20 PRK07121 hypothetical protein; 99.9 4.3E-23 9.2E-28 218.5 28.3 377 46-471 16-491 (492)
21 PRK08958 sdhA succinate dehydr 99.9 1.4E-22 3.1E-27 217.7 31.0 356 49-472 6-424 (588)
22 PRK06175 L-aspartate oxidase; 99.9 2.3E-22 4.9E-27 209.0 31.5 342 49-471 3-387 (433)
23 PRK08641 sdhA succinate dehydr 99.9 4.7E-22 1E-26 213.9 34.3 353 50-472 3-411 (589)
24 PRK07804 L-aspartate oxidase; 99.9 5.3E-22 1.2E-26 211.7 32.6 350 46-471 12-413 (541)
25 PLN02815 L-aspartate oxidase 99.9 7.7E-22 1.7E-26 211.3 33.0 354 48-471 27-433 (594)
26 TIGR00551 nadB L-aspartate oxi 99.9 3.4E-22 7.3E-27 211.1 29.5 342 50-471 2-389 (488)
27 TIGR01811 sdhA_Bsu succinate d 99.9 7.7E-22 1.7E-26 212.5 31.9 359 53-471 1-425 (603)
28 PRK08205 sdhA succinate dehydr 99.9 1.5E-21 3.2E-26 210.1 33.8 353 49-472 4-419 (583)
29 PRK07573 sdhA succinate dehydr 99.9 2.7E-21 5.8E-26 209.5 33.4 187 49-241 34-262 (640)
30 TIGR02485 CobZ_N-term precorri 99.9 1.2E-22 2.7E-27 211.6 21.4 366 55-471 1-430 (432)
31 PRK07512 L-aspartate oxidase; 99.9 1.1E-21 2.4E-26 208.0 28.6 345 49-473 8-399 (513)
32 PRK07395 L-aspartate oxidase; 99.9 3.7E-21 7.9E-26 205.2 32.7 348 46-470 5-402 (553)
33 PRK08275 putative oxidoreducta 99.9 1.7E-21 3.8E-26 208.6 30.3 360 49-473 8-406 (554)
34 PRK08071 L-aspartate oxidase; 99.9 2.1E-21 4.5E-26 205.8 30.2 340 50-471 3-388 (510)
35 TIGR01813 flavo_cyto_c flavocy 99.9 1.1E-21 2.4E-26 205.0 27.0 366 52-465 1-439 (439)
36 PRK06854 adenylylsulfate reduc 99.9 1.1E-20 2.3E-25 204.0 34.1 199 49-250 10-243 (608)
37 PRK09077 L-aspartate oxidase; 99.9 6.7E-21 1.4E-25 203.2 32.0 352 48-471 6-409 (536)
38 PRK12837 3-ketosteroid-delta-1 99.9 2.6E-21 5.6E-26 205.5 24.9 389 46-469 3-510 (513)
39 PRK12844 3-ketosteroid-delta-1 99.9 9.4E-22 2E-26 210.4 21.1 187 47-240 3-311 (557)
40 PRK08401 L-aspartate oxidase; 99.9 9.1E-21 2E-25 199.1 28.1 335 50-470 1-365 (466)
41 COG1053 SdhA Succinate dehydro 99.9 1.5E-20 3.3E-25 198.9 26.8 360 47-476 3-417 (562)
42 TIGR02061 aprA adenosine phosp 99.9 5.1E-20 1.1E-24 197.5 30.3 198 52-253 1-242 (614)
43 PRK12834 putative FAD-binding 99.9 1.1E-20 2.5E-25 202.2 24.9 173 49-225 3-227 (549)
44 PRK13800 putative oxidoreducta 99.9 8.4E-20 1.8E-24 205.3 29.0 356 47-472 10-410 (897)
45 PTZ00306 NADH-dependent fumara 99.9 8.3E-20 1.8E-24 209.7 29.4 393 48-476 407-907 (1167)
46 PRK12835 3-ketosteroid-delta-1 99.9 4.5E-20 9.8E-25 198.3 25.1 74 396-471 492-570 (584)
47 PRK12842 putative succinate de 99.9 1.2E-19 2.6E-24 195.3 27.6 81 394-476 487-572 (574)
48 PRK12843 putative FAD-binding 99.9 8.3E-20 1.8E-24 196.4 26.2 188 45-239 11-322 (578)
49 PRK12845 3-ketosteroid-delta-1 99.9 1.1E-19 2.4E-24 194.1 26.6 74 394-469 485-563 (564)
50 PRK12839 hypothetical protein; 99.9 2E-19 4.4E-24 192.6 27.7 75 394-470 488-567 (572)
51 PRK06134 putative FAD-binding 99.9 1.7E-19 3.6E-24 194.2 26.4 78 395-474 492-574 (581)
52 PRK07843 3-ketosteroid-delta-1 99.8 1.8E-19 3.8E-24 193.1 19.6 73 396-470 479-556 (557)
53 TIGR00136 gidA glucose-inhibit 99.8 1.9E-19 4.2E-24 189.4 17.8 65 406-476 325-395 (617)
54 COG0029 NadB Aspartate oxidase 99.8 3.8E-18 8.2E-23 171.7 26.1 343 52-470 9-396 (518)
55 PRK05675 sdhA succinate dehydr 99.8 3.4E-17 7.3E-22 175.8 28.1 340 63-472 1-406 (570)
56 PF00890 FAD_binding_2: FAD bi 99.8 1.4E-17 3E-22 173.0 21.4 183 52-240 1-242 (417)
57 TIGR01816 sdhA_forward succina 99.8 2E-16 4.3E-21 169.8 28.9 332 74-472 4-397 (565)
58 KOG2404 Fumarate reductase, fl 99.7 1.7E-17 3.6E-22 157.5 11.4 186 52-243 11-251 (477)
59 PRK05192 tRNA uridine 5-carbox 99.7 1.3E-16 2.7E-21 168.5 14.5 146 49-224 3-156 (618)
60 PRK05335 tRNA (uracil-5-)-meth 99.7 1.3E-15 2.9E-20 154.3 20.6 67 404-476 295-368 (436)
61 COG0445 GidA Flavin-dependent 99.6 6.4E-16 1.4E-20 156.9 10.6 67 404-476 325-397 (621)
62 PF01134 GIDA: Glucose inhibit 99.6 4.7E-14 1E-18 141.9 18.7 142 52-223 1-150 (392)
63 COG0644 FixC Dehydrogenases (f 99.6 9.2E-13 2E-17 135.9 25.4 166 49-249 2-171 (396)
64 COG2509 Uncharacterized FAD-de 99.5 4.2E-12 9.1E-17 126.9 25.6 287 158-470 169-482 (486)
65 KOG2311 NAD/FAD-utilizing prot 99.5 1.9E-13 4.1E-18 136.1 11.7 100 360-475 315-425 (679)
66 COG0492 TrxB Thioredoxin reduc 99.5 1.1E-12 2.5E-17 129.2 17.0 113 49-225 2-115 (305)
67 PRK04176 ribulose-1,5-biphosph 99.5 2.4E-12 5.2E-17 124.5 17.8 147 49-230 24-178 (257)
68 TIGR00292 thiazole biosynthesi 99.5 3.3E-12 7.1E-17 123.2 18.1 154 49-237 20-183 (254)
69 COG3573 Predicted oxidoreducta 99.4 2.7E-11 5.9E-16 116.2 22.9 172 49-223 4-226 (552)
70 COG1635 THI4 Ribulose 1,5-bisp 99.4 8.9E-12 1.9E-16 113.3 15.7 147 49-231 29-184 (262)
71 PLN02661 Putative thiazole syn 99.4 6E-12 1.3E-16 124.9 15.6 167 49-251 91-272 (357)
72 TIGR03329 Phn_aa_oxid putative 99.4 6E-12 1.3E-16 132.4 16.6 183 45-240 19-250 (460)
73 PLN02172 flavin-containing mon 99.4 4.5E-12 9.7E-17 132.6 15.1 158 49-223 9-171 (461)
74 PF01266 DAO: FAD dependent ox 99.4 7.1E-12 1.5E-16 126.4 15.4 174 52-238 1-214 (358)
75 PRK06116 glutathione reductase 99.4 1.7E-10 3.6E-15 121.2 25.9 138 49-225 3-143 (450)
76 PRK11101 glpA sn-glycerol-3-ph 99.4 1.8E-11 4E-16 131.1 18.2 182 48-237 4-221 (546)
77 PRK11728 hydroxyglutarate oxid 99.4 1.9E-11 4.2E-16 125.9 17.6 178 50-237 2-214 (393)
78 PRK12409 D-amino acid dehydrog 99.3 6.5E-11 1.4E-15 122.7 19.4 74 160-237 195-268 (410)
79 PRK06416 dihydrolipoamide dehy 99.3 3.6E-10 7.9E-15 119.0 25.2 139 49-225 3-146 (462)
80 TIGR01377 soxA_mon sarcosine o 99.3 3.3E-11 7E-16 123.5 16.8 68 160-237 143-210 (380)
81 PTZ00383 malate:quinone oxidor 99.3 3.5E-11 7.5E-16 126.6 17.2 69 160-237 209-283 (497)
82 PRK11259 solA N-methyltryptoph 99.3 2.1E-11 4.5E-16 124.8 15.1 186 49-247 2-224 (376)
83 PRK09897 hypothetical protein; 99.3 3.1E-11 6.6E-16 127.7 16.1 156 50-223 1-164 (534)
84 PRK10157 putative oxidoreducta 99.3 9.7E-12 2.1E-16 129.5 11.7 162 49-237 4-173 (428)
85 TIGR01320 mal_quin_oxido malat 99.3 7.8E-11 1.7E-15 124.1 18.5 75 160-237 176-250 (483)
86 COG0579 Predicted dehydrogenas 99.3 8.8E-11 1.9E-15 119.8 17.9 181 49-238 2-222 (429)
87 PF12831 FAD_oxidored: FAD dep 99.3 1.1E-12 2.3E-17 136.6 4.0 158 52-238 1-159 (428)
88 PRK00711 D-amino acid dehydrog 99.3 9.6E-11 2.1E-15 121.6 17.7 70 160-238 199-268 (416)
89 TIGR01373 soxB sarcosine oxida 99.3 1.1E-10 2.4E-15 120.8 18.1 76 161-245 182-257 (407)
90 COG1249 Lpd Pyruvate/2-oxoglut 99.3 8.7E-10 1.9E-14 114.3 24.5 49 49-109 3-52 (454)
91 PRK06327 dihydrolipoamide dehy 99.3 4.1E-10 8.9E-15 119.0 22.0 149 49-225 3-157 (475)
92 PF01946 Thi4: Thi4 family; PD 99.3 4.8E-11 1E-15 109.3 12.4 142 49-226 16-166 (230)
93 PRK13339 malate:quinone oxidor 99.3 2.1E-10 4.6E-15 120.4 19.0 75 160-237 182-257 (497)
94 PRK12266 glpD glycerol-3-phosp 99.3 1.1E-10 2.5E-15 124.0 17.3 73 160-236 153-226 (508)
95 PRK05257 malate:quinone oxidor 99.3 2.2E-10 4.7E-15 120.9 19.2 75 160-237 181-256 (494)
96 PRK10262 thioredoxin reductase 99.3 1.3E-10 2.8E-15 116.4 16.7 115 47-225 3-117 (321)
97 PRK01747 mnmC bifunctional tRN 99.2 1.4E-10 3.1E-15 127.4 17.1 66 152-225 396-463 (662)
98 PRK07190 hypothetical protein; 99.2 3.3E-10 7E-15 119.8 18.3 165 49-239 4-176 (487)
99 PRK10015 oxidoreductase; Provi 99.2 3E-11 6.4E-16 125.8 9.9 162 49-237 4-173 (429)
100 PRK08773 2-octaprenyl-3-methyl 99.2 2.8E-10 6.2E-15 117.2 15.4 167 48-238 4-179 (392)
101 PRK07608 ubiquinone biosynthes 99.2 8.5E-11 1.9E-15 120.8 11.1 170 49-238 4-177 (388)
102 PRK07333 2-octaprenyl-6-methox 99.2 4E-10 8.6E-15 116.4 15.7 69 160-238 109-177 (403)
103 PF13738 Pyr_redox_3: Pyridine 99.2 1.3E-10 2.9E-15 108.1 10.7 134 54-224 1-137 (203)
104 PRK08244 hypothetical protein; 99.2 5.4E-10 1.2E-14 118.7 16.3 166 50-238 2-169 (493)
105 PRK07364 2-octaprenyl-6-methox 99.2 2.6E-10 5.7E-15 118.3 13.3 170 45-236 13-189 (415)
106 PRK06847 hypothetical protein; 99.2 1.5E-10 3.3E-15 118.4 11.0 156 49-226 3-164 (375)
107 TIGR00137 gid_trmFO tRNA:m(5)U 99.2 4.5E-09 9.8E-14 107.8 21.6 67 404-476 294-367 (433)
108 TIGR02032 GG-red-SF geranylger 99.2 9.4E-10 2E-14 108.2 16.0 157 51-238 1-158 (295)
109 PLN02464 glycerol-3-phosphate 99.2 6E-10 1.3E-14 121.0 15.9 74 160-235 230-304 (627)
110 KOG2820 FAD-dependent oxidored 99.1 2.3E-10 5.1E-15 110.2 10.5 171 47-225 4-212 (399)
111 PRK06834 hypothetical protein; 99.1 9.2E-10 2E-14 116.4 15.8 165 50-239 3-167 (488)
112 PF01494 FAD_binding_3: FAD bi 99.1 2.9E-10 6.2E-15 114.6 11.5 72 161-237 110-181 (356)
113 KOG1335 Dihydrolipoamide dehyd 99.1 5.7E-10 1.2E-14 109.0 12.7 62 163-225 253-314 (506)
114 TIGR01424 gluta_reduc_2 glutat 99.1 7.4E-10 1.6E-14 116.1 14.7 136 50-225 2-142 (446)
115 PRK05714 2-octaprenyl-3-methyl 99.1 4.7E-10 1E-14 116.1 12.5 67 161-237 111-177 (405)
116 TIGR03364 HpnW_proposed FAD de 99.1 1.1E-09 2.4E-14 111.6 15.1 54 160-225 143-197 (365)
117 PRK13369 glycerol-3-phosphate 99.1 7.2E-10 1.6E-14 117.9 14.1 72 160-236 153-225 (502)
118 PTZ00058 glutathione reductase 99.1 1E-09 2.2E-14 117.3 15.0 51 46-108 44-94 (561)
119 PLN00093 geranylgeranyl diphos 99.1 1.9E-09 4.1E-14 112.8 16.4 165 46-237 35-208 (450)
120 PRK06183 mhpA 3-(3-hydroxyphen 99.1 1.5E-09 3.2E-14 116.5 16.0 169 48-238 8-184 (538)
121 PRK06184 hypothetical protein; 99.1 1E-09 2.2E-14 116.8 14.6 166 50-238 3-178 (502)
122 TIGR02023 BchP-ChlP geranylger 99.1 2.7E-09 5.8E-14 109.9 17.1 160 51-237 1-164 (388)
123 COG0654 UbiH 2-polyprenyl-6-me 99.1 5.9E-10 1.3E-14 114.7 12.2 158 50-235 2-169 (387)
124 TIGR01984 UbiH 2-polyprenyl-6- 99.1 2.5E-09 5.4E-14 109.7 16.6 68 161-238 104-172 (382)
125 PLN02463 lycopene beta cyclase 99.1 1.6E-09 3.5E-14 112.9 15.0 140 47-225 25-169 (447)
126 PRK08013 oxidoreductase; Provi 99.1 6E-10 1.3E-14 115.2 11.8 168 50-238 3-178 (400)
127 TIGR01292 TRX_reduct thioredox 99.1 1.6E-09 3.4E-14 107.0 13.9 112 51-225 1-112 (300)
128 PRK06126 hypothetical protein; 99.1 4.4E-09 9.5E-14 113.2 18.4 72 162-238 126-198 (545)
129 TIGR01421 gluta_reduc_1 glutat 99.1 4.8E-10 1E-14 117.6 10.4 135 50-225 2-141 (450)
130 COG0578 GlpA Glycerol-3-phosph 99.1 2E-09 4.3E-14 112.1 14.7 80 152-235 153-233 (532)
131 PRK05976 dihydrolipoamide dehy 99.1 1.5E-09 3.3E-14 114.6 14.2 144 49-225 3-154 (472)
132 TIGR01988 Ubi-OHases Ubiquinon 99.1 1.1E-09 2.5E-14 112.1 12.6 67 161-237 105-172 (385)
133 PRK06185 hypothetical protein; 99.1 1.2E-09 2.6E-14 113.0 12.7 170 47-238 3-179 (407)
134 PLN02697 lycopene epsilon cycl 99.0 3.5E-09 7.5E-14 112.2 15.4 136 49-225 107-248 (529)
135 COG0665 DadA Glycine/D-amino a 99.0 6.3E-09 1.4E-13 106.8 17.0 66 160-235 154-220 (387)
136 PRK05732 2-octaprenyl-6-methox 99.0 4.2E-09 9.1E-14 108.5 15.6 67 162-238 112-179 (395)
137 PRK08020 ubiF 2-octaprenyl-3-m 99.0 3.4E-09 7.3E-14 109.1 14.6 67 161-237 111-178 (391)
138 PRK09126 hypothetical protein; 99.0 1.1E-09 2.3E-14 112.8 10.9 66 162-237 110-176 (392)
139 PRK06617 2-octaprenyl-6-methox 99.0 1.2E-09 2.6E-14 111.9 10.4 67 160-237 102-169 (374)
140 PRK06370 mercuric reductase; V 99.0 2.5E-09 5.5E-14 112.6 13.0 137 49-225 4-145 (463)
141 TIGR02028 ChlP geranylgeranyl 99.0 1E-08 2.2E-13 105.9 16.7 160 51-237 1-169 (398)
142 PRK07494 2-octaprenyl-6-methox 99.0 8.8E-09 1.9E-13 105.9 16.3 68 161-238 110-177 (388)
143 PRK08132 FAD-dependent oxidore 99.0 1.2E-08 2.6E-13 109.9 17.9 171 45-238 18-195 (547)
144 PLN02612 phytoene desaturase 99.0 3.6E-07 7.8E-12 98.5 29.2 56 162-223 308-364 (567)
145 PRK08850 2-octaprenyl-6-methox 99.0 5.6E-09 1.2E-13 108.1 14.7 67 161-237 110-177 (405)
146 PLN02507 glutathione reductase 99.0 1.5E-09 3.3E-14 115.1 10.0 142 48-225 23-179 (499)
147 TIGR03143 AhpF_homolog putativ 99.0 6.4E-09 1.4E-13 111.9 14.8 112 49-225 3-114 (555)
148 PRK06467 dihydrolipoamide dehy 99.0 5.5E-09 1.2E-13 110.2 14.0 140 49-225 3-148 (471)
149 PRK05249 soluble pyridine nucl 99.0 1.6E-09 3.5E-14 114.1 9.9 144 49-225 4-149 (461)
150 KOG2415 Electron transfer flav 99.0 3E-09 6.5E-14 105.0 10.8 173 49-237 75-269 (621)
151 COG1231 Monoamine oxidase [Ami 99.0 2.1E-07 4.6E-12 94.1 24.3 39 48-88 5-44 (450)
152 PRK08163 salicylate hydroxylas 99.0 3.7E-09 8.1E-14 109.0 12.2 59 161-226 108-167 (396)
153 PRK14694 putative mercuric red 99.0 4.3E-09 9.2E-14 111.1 12.7 49 47-107 3-51 (468)
154 PRK08243 4-hydroxybenzoate 3-m 99.0 1.4E-08 3.1E-13 104.6 16.4 61 162-225 103-163 (392)
155 PRK07045 putative monooxygenas 99.0 9.2E-09 2E-13 105.8 14.1 154 49-226 4-166 (388)
156 TIGR02053 MerA mercuric reduct 98.9 7.7E-09 1.7E-13 109.0 13.6 60 163-226 208-267 (463)
157 PRK07251 pyridine nucleotide-d 98.9 1.2E-08 2.5E-13 106.9 14.7 34 50-85 3-36 (438)
158 PLN02985 squalene monooxygenas 98.9 7.1E-09 1.5E-13 110.2 13.1 70 161-236 146-216 (514)
159 PRK08849 2-octaprenyl-3-methyl 98.9 3E-09 6.6E-14 109.3 9.9 66 162-237 110-176 (384)
160 KOG0404 Thioredoxin reductase 98.9 2.7E-08 6E-13 90.8 14.8 117 50-225 8-124 (322)
161 PRK06115 dihydrolipoamide dehy 98.9 7.4E-09 1.6E-13 109.2 12.8 139 50-225 3-148 (466)
162 TIGR01790 carotene-cycl lycope 98.9 1.1E-08 2.3E-13 105.3 13.6 136 52-225 1-141 (388)
163 PLN02487 zeta-carotene desatur 98.9 8.7E-07 1.9E-11 94.9 28.5 69 154-224 287-359 (569)
164 PRK15317 alkyl hydroperoxide r 98.9 1.5E-08 3.2E-13 108.2 15.1 114 48-225 209-322 (517)
165 PRK11445 putative oxidoreducta 98.9 3.1E-08 6.7E-13 100.6 16.3 61 160-225 97-157 (351)
166 PRK07588 hypothetical protein; 98.9 6.7E-09 1.5E-13 107.0 11.6 58 161-226 102-159 (391)
167 TIGR03140 AhpF alkyl hydropero 98.9 1.5E-08 3.3E-13 108.1 14.4 114 48-225 210-323 (515)
168 PRK06996 hypothetical protein; 98.9 1.1E-08 2.3E-13 105.8 12.8 161 46-224 7-173 (398)
169 KOG1399 Flavin-containing mono 98.9 1.4E-08 3E-13 105.0 13.3 144 49-223 5-151 (448)
170 PRK07538 hypothetical protein; 98.9 1.6E-08 3.4E-13 105.1 13.8 158 51-225 1-165 (413)
171 PRK07236 hypothetical protein; 98.9 5.2E-08 1.1E-12 100.2 17.2 149 49-226 5-155 (386)
172 PRK08010 pyridine nucleotide-d 98.9 2.2E-08 4.7E-13 104.9 14.3 33 50-84 3-35 (441)
173 PRK06753 hypothetical protein; 98.9 2.6E-08 5.5E-13 101.9 14.4 64 160-235 96-159 (373)
174 PF00743 FMO-like: Flavin-bind 98.9 1.4E-08 3E-13 108.0 12.8 142 51-224 2-149 (531)
175 TIGR03169 Nterm_to_SelD pyridi 98.9 5.1E-08 1.1E-12 99.5 16.5 51 426-476 265-315 (364)
176 PLN02546 glutathione reductase 98.9 4.7E-09 1E-13 112.3 9.2 144 49-225 78-228 (558)
177 TIGR01989 COQ6 Ubiquinone bios 98.9 4.8E-09 1E-13 109.7 9.1 70 161-238 116-193 (437)
178 PF06039 Mqo: Malate:quinone o 98.9 5.5E-08 1.2E-12 98.7 16.2 74 161-237 180-254 (488)
179 PF13454 NAD_binding_9: FAD-NA 98.9 1.7E-08 3.7E-13 90.2 11.0 145 54-223 1-155 (156)
180 TIGR01350 lipoamide_DH dihydro 98.9 2.5E-08 5.4E-13 105.0 14.0 138 50-225 1-143 (461)
181 PRK13748 putative mercuric red 98.9 4.2E-08 9.2E-13 105.9 16.0 68 163-238 311-379 (561)
182 PRK07845 flavoprotein disulfid 98.9 4.1E-08 9E-13 103.5 15.2 143 50-225 1-151 (466)
183 PRK14989 nitrite reductase sub 98.9 3.9E-08 8.4E-13 110.0 15.6 45 172-225 69-113 (847)
184 TIGR02374 nitri_red_nirB nitri 98.9 6.1E-08 1.3E-12 108.3 17.1 45 172-225 64-108 (785)
185 COG1233 Phytoene dehydrogenase 98.9 3.8E-08 8.1E-13 104.2 14.7 65 152-223 215-279 (487)
186 PRK05868 hypothetical protein; 98.9 2.8E-08 6.1E-13 101.7 13.4 56 163-226 106-161 (372)
187 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 5.3E-08 1.2E-12 100.3 15.1 60 162-225 103-163 (390)
188 TIGR01423 trypano_reduc trypan 98.8 2.1E-08 4.6E-13 105.9 12.0 49 49-109 2-60 (486)
189 KOG2844 Dimethylglycine dehydr 98.8 7.2E-08 1.6E-12 100.5 15.3 82 160-251 185-266 (856)
190 PRK06475 salicylate hydroxylas 98.8 2.3E-08 5E-13 103.4 11.8 62 160-225 105-167 (400)
191 PRK08294 phenol 2-monooxygenas 98.8 1.8E-08 3.9E-13 109.8 11.3 177 47-238 29-220 (634)
192 PRK06912 acoL dihydrolipoamide 98.8 3E-08 6.5E-13 104.4 12.6 138 52-225 2-144 (458)
193 TIGR02732 zeta_caro_desat caro 98.8 2.1E-06 4.6E-11 90.7 26.5 61 162-224 219-283 (474)
194 PTZ00052 thioredoxin reductase 98.8 1.2E-07 2.6E-12 100.7 16.8 57 163-226 223-279 (499)
195 PRK07818 dihydrolipoamide dehy 98.8 3.4E-08 7.5E-13 104.1 11.9 46 50-107 4-49 (466)
196 TIGR02730 carot_isom carotene 98.8 1.4E-07 2.9E-12 100.4 16.5 60 160-225 227-286 (493)
197 PRK07233 hypothetical protein; 98.8 1.9E-07 4.2E-12 97.2 17.3 58 159-223 195-252 (434)
198 PRK14727 putative mercuric red 98.8 4.5E-08 9.8E-13 103.6 11.9 47 49-107 15-62 (479)
199 PRK13977 myosin-cross-reactive 98.8 1.4E-07 3E-12 99.6 15.1 65 159-223 223-291 (576)
200 PF05834 Lycopene_cycl: Lycope 98.8 1E-07 2.2E-12 97.7 13.8 136 52-225 1-142 (374)
201 COG2072 TrkA Predicted flavopr 98.8 6.1E-08 1.3E-12 101.2 12.1 134 47-223 5-142 (443)
202 PRK06292 dihydrolipoamide dehy 98.8 5.4E-08 1.2E-12 102.5 11.8 37 49-87 2-38 (460)
203 KOG2853 Possible oxidoreductas 98.7 3.4E-07 7.4E-12 88.6 15.6 185 49-237 85-330 (509)
204 TIGR03219 salicylate_mono sali 98.7 6.1E-08 1.3E-12 100.6 10.7 58 160-226 103-160 (414)
205 PF04820 Trp_halogenase: Trypt 98.7 2.6E-08 5.6E-13 104.4 6.4 59 160-225 152-211 (454)
206 COG3634 AhpF Alkyl hydroperoxi 98.7 2.1E-08 4.5E-13 97.1 5.1 57 162-223 266-323 (520)
207 COG3380 Predicted NAD/FAD-depe 98.7 1E-07 2.2E-12 89.8 9.3 145 51-222 2-157 (331)
208 PRK07846 mycothione reductase; 98.7 9.2E-08 2E-12 100.4 10.1 46 50-109 1-46 (451)
209 TIGR01438 TGR thioredoxin and 98.7 1.2E-07 2.6E-12 100.3 10.8 55 50-108 2-57 (484)
210 TIGR03452 mycothione_red mycot 98.6 8.7E-08 1.9E-12 100.6 9.3 46 50-109 2-47 (452)
211 PTZ00153 lipoamide dehydrogena 98.6 1E-07 2.3E-12 103.5 9.7 48 50-109 116-165 (659)
212 TIGR02734 crtI_fam phytoene de 98.6 2.9E-07 6.2E-12 98.1 12.9 58 160-223 217-274 (502)
213 PRK08255 salicylyl-CoA 5-hydro 98.6 6.7E-08 1.5E-12 107.7 8.4 142 51-226 1-142 (765)
214 TIGR03378 glycerol3P_GlpB glyc 98.6 9.6E-07 2.1E-11 90.4 15.5 69 161-235 262-331 (419)
215 PRK07208 hypothetical protein; 98.6 1.4E-06 3.1E-11 92.2 17.4 63 160-223 216-278 (479)
216 PF00732 GMC_oxred_N: GMC oxid 98.6 8.9E-07 1.9E-11 87.5 14.9 73 162-235 193-267 (296)
217 PLN02268 probable polyamine ox 98.6 1.5E-06 3.2E-11 90.9 17.3 39 51-91 1-40 (435)
218 PLN02927 antheraxanthin epoxid 98.6 1.1E-07 2.4E-12 102.8 9.0 35 48-84 79-113 (668)
219 PLN02576 protoporphyrinogen ox 98.6 1.2E-06 2.7E-11 93.1 15.3 43 47-91 9-53 (496)
220 KOG1298 Squalene monooxygenase 98.5 9.3E-07 2E-11 87.0 12.7 149 46-224 41-207 (509)
221 PRK11883 protoporphyrinogen ox 98.5 7.5E-07 1.6E-11 93.4 13.0 56 159-223 218-273 (451)
222 KOG0042 Glycerol-3-phosphate d 98.5 5.7E-07 1.2E-11 91.9 11.1 64 163-226 225-288 (680)
223 TIGR00562 proto_IX_ox protopor 98.5 8E-07 1.7E-11 93.6 12.7 41 50-90 2-45 (462)
224 PRK05329 anaerobic glycerol-3- 98.5 3.4E-06 7.4E-11 87.2 16.5 58 163-224 260-317 (422)
225 PRK04965 NADH:flavorubredoxin 98.5 6.4E-06 1.4E-10 84.5 18.5 69 162-238 183-251 (377)
226 TIGR02733 desat_CrtD C-3',4' d 98.5 3.7E-06 8E-11 89.4 17.0 64 159-223 229-292 (492)
227 PRK12416 protoporphyrinogen ox 98.5 2.2E-06 4.7E-11 90.4 14.4 55 159-222 223-277 (463)
228 PTZ00367 squalene epoxidase; P 98.5 7.7E-07 1.7E-11 95.4 10.8 35 49-85 32-66 (567)
229 PTZ00363 rab-GDP dissociation 98.5 2.5E-06 5.4E-11 88.8 14.2 64 153-222 224-287 (443)
230 TIGR02731 phytoene_desat phyto 98.4 7E-06 1.5E-10 86.3 17.4 61 162-223 213-274 (453)
231 PRK09754 phenylpropionate diox 98.4 1E-05 2.2E-10 83.6 18.3 67 162-237 186-252 (396)
232 PF13434 K_oxygenase: L-lysine 98.4 3.1E-07 6.6E-12 92.6 6.4 154 50-226 2-160 (341)
233 PLN02785 Protein HOTHEAD 98.4 9.8E-06 2.1E-10 87.5 18.3 36 46-84 51-86 (587)
234 KOG2614 Kynurenine 3-monooxyge 98.4 1.4E-06 3E-11 87.1 10.4 34 50-85 2-35 (420)
235 COG1232 HemY Protoporphyrinoge 98.4 5.9E-06 1.3E-10 85.3 15.0 41 51-91 1-42 (444)
236 PF07992 Pyr_redox_2: Pyridine 98.4 9.8E-07 2.1E-11 81.7 8.2 31 52-84 1-31 (201)
237 PLN02529 lysine-specific histo 98.4 2E-05 4.3E-10 86.6 19.4 41 48-90 158-199 (738)
238 COG4529 Uncharacterized protei 98.4 3.2E-06 6.9E-11 86.4 12.0 154 50-224 1-163 (474)
239 PLN02676 polyamine oxidase 98.4 7.2E-06 1.6E-10 86.8 15.2 56 160-222 222-283 (487)
240 COG1251 NirB NAD(P)H-nitrite r 98.4 4.3E-06 9.3E-11 88.9 13.2 230 171-468 68-304 (793)
241 KOG4716 Thioredoxin reductase 98.4 8.8E-06 1.9E-10 78.9 13.8 151 47-225 16-173 (503)
242 TIGR01372 soxA sarcosine oxida 98.3 6.6E-06 1.4E-10 94.3 15.3 37 49-87 162-199 (985)
243 PRK09564 coenzyme A disulfide 98.3 4.2E-06 9E-11 87.8 12.3 34 52-85 2-35 (444)
244 COG1206 Gid NAD(FAD)-utilizing 98.3 1.6E-05 3.4E-10 77.0 14.8 67 404-476 299-372 (439)
245 PRK13512 coenzyme A disulfide 98.3 9.4E-06 2E-10 85.0 14.0 35 51-85 2-36 (438)
246 PLN02568 polyamine oxidase 98.3 1.7E-05 3.6E-10 84.9 15.6 55 159-222 239-293 (539)
247 KOG2403 Succinate dehydrogenas 98.3 3.6E-06 7.7E-11 86.4 9.7 72 396-473 391-472 (642)
248 PRK02106 choline dehydrogenase 98.3 2.4E-05 5.1E-10 84.6 16.8 36 48-84 3-38 (560)
249 PRK09853 putative selenate red 98.3 5.9E-06 1.3E-10 92.8 12.0 37 49-87 538-575 (1019)
250 TIGR01810 betA choline dehydro 98.3 4.5E-05 9.8E-10 81.9 18.5 54 168-224 199-254 (532)
251 PRK12779 putative bifunctional 98.2 4.6E-06 1E-10 94.5 10.6 37 49-87 305-342 (944)
252 TIGR01789 lycopene_cycl lycope 98.2 4.1E-06 8.8E-11 85.7 9.3 33 52-84 1-33 (370)
253 KOG2665 Predicted FAD-dependen 98.2 1.7E-05 3.7E-10 76.3 12.6 83 160-251 194-278 (453)
254 KOG2960 Protein involved in th 98.2 2.9E-06 6.3E-11 77.1 6.9 144 50-225 76-234 (328)
255 PRK12831 putative oxidoreducta 98.2 2.9E-06 6.3E-11 89.3 7.8 38 48-87 138-176 (464)
256 KOG0405 Pyridine nucleotide-di 98.2 1.6E-05 3.5E-10 77.5 12.0 50 46-107 16-66 (478)
257 TIGR01316 gltA glutamate synth 98.2 9.1E-05 2E-09 77.8 18.6 38 49-88 132-170 (449)
258 PLN02328 lysine-specific histo 98.2 4E-05 8.8E-10 84.7 16.1 41 47-89 235-276 (808)
259 TIGR03315 Se_ygfK putative sel 98.1 8.8E-06 1.9E-10 91.8 10.4 37 49-87 536-573 (1012)
260 TIGR03197 MnmC_Cterm tRNA U-34 98.1 1.4E-05 3E-10 82.1 10.5 86 152-247 123-210 (381)
261 PRK12769 putative oxidoreducta 98.1 5.1E-05 1.1E-09 83.5 15.4 37 49-87 326-363 (654)
262 COG2907 Predicted NAD/FAD-bind 98.1 2.1E-05 4.5E-10 76.8 10.7 38 48-88 6-44 (447)
263 PF13450 NAD_binding_8: NAD(P) 98.1 3.9E-06 8.5E-11 63.7 4.4 31 55-87 1-32 (68)
264 KOG0029 Amine oxidase [Seconda 98.1 4.3E-06 9.4E-11 88.1 6.0 43 47-91 12-55 (501)
265 PRK12810 gltD glutamate syntha 98.1 0.00016 3.5E-09 76.4 17.8 37 49-87 142-179 (471)
266 TIGR02462 pyranose_ox pyranose 98.1 8.6E-05 1.9E-09 79.0 15.5 35 51-87 1-36 (544)
267 PRK12775 putative trifunctiona 98.0 9.5E-06 2.1E-10 92.7 8.2 37 49-87 429-466 (1006)
268 PLN03000 amine oxidase 98.0 8.5E-05 1.8E-09 82.3 15.2 39 49-89 183-222 (881)
269 COG3075 GlpB Anaerobic glycero 98.0 7.5E-05 1.6E-09 72.5 12.8 58 163-224 259-316 (421)
270 COG2303 BetA Choline dehydroge 98.0 9.4E-05 2E-09 79.4 14.9 36 47-84 4-39 (542)
271 TIGR03377 glycerol3P_GlpA glyc 98.0 6.7E-05 1.4E-09 80.3 13.8 81 160-244 126-206 (516)
272 PRK12778 putative bifunctional 98.0 1.8E-05 3.9E-10 88.4 9.0 37 49-87 430-467 (752)
273 KOG4254 Phytoene desaturase [C 98.0 7.4E-05 1.6E-09 75.3 11.9 62 154-222 257-318 (561)
274 PTZ00318 NADH dehydrogenase-li 98.0 6.7E-05 1.5E-09 78.2 12.0 56 415-474 295-350 (424)
275 PF00070 Pyr_redox: Pyridine n 97.9 0.00017 3.7E-09 56.5 11.2 31 52-84 1-31 (80)
276 PRK11749 dihydropyrimidine deh 97.9 2.7E-05 5.8E-10 82.0 8.5 38 48-87 138-176 (457)
277 KOG0685 Flavin-containing amin 97.9 8.4E-05 1.8E-09 75.7 10.5 42 49-91 20-62 (498)
278 KOG1238 Glucose dehydrogenase/ 97.9 0.0005 1.1E-08 72.8 16.4 37 47-84 54-90 (623)
279 PRK12809 putative oxidoreducta 97.8 0.00048 1E-08 75.6 16.7 37 49-87 309-346 (639)
280 TIGR01350 lipoamide_DH dihydro 97.8 0.00021 4.6E-09 75.3 13.5 99 51-226 171-270 (461)
281 PRK06416 dihydrolipoamide dehy 97.8 0.00026 5.6E-09 74.7 13.1 100 51-226 173-273 (462)
282 TIGR01318 gltD_gamma_fam gluta 97.8 9.1E-05 2E-09 78.2 8.9 37 49-87 140-177 (467)
283 PRK05249 soluble pyridine nucl 97.7 0.00027 5.9E-09 74.5 12.2 97 51-226 176-273 (461)
284 PRK12770 putative glutamate sy 97.7 0.00014 3E-09 73.9 9.7 37 49-87 17-54 (352)
285 TIGR02352 thiamin_ThiO glycine 97.7 0.00047 1E-08 69.1 13.3 60 160-226 135-194 (337)
286 PRK06370 mercuric reductase; V 97.7 0.00042 9.1E-09 73.1 13.3 100 51-226 172-272 (463)
287 PRK07251 pyridine nucleotide-d 97.7 0.00049 1.1E-08 72.1 13.7 96 51-226 158-254 (438)
288 PRK06116 glutathione reductase 97.7 0.00049 1.1E-08 72.4 13.4 98 51-226 168-266 (450)
289 TIGR00031 UDP-GALP_mutase UDP- 97.7 4.7E-05 1E-09 77.6 5.2 36 50-87 1-37 (377)
290 TIGR01317 GOGAT_sm_gam glutama 97.7 0.00015 3.2E-09 76.9 8.8 37 49-87 142-179 (485)
291 KOG2852 Possible oxidoreductas 97.6 0.00012 2.6E-09 69.9 7.0 36 49-86 9-50 (380)
292 PF13434 K_oxygenase: L-lysine 97.6 0.00057 1.2E-08 69.0 12.3 145 47-222 187-338 (341)
293 COG3349 Uncharacterized conser 97.6 6.2E-05 1.3E-09 77.8 5.3 39 51-91 1-40 (485)
294 PRK09564 coenzyme A disulfide 97.6 0.00089 1.9E-08 70.2 14.2 108 51-238 150-258 (444)
295 TIGR01424 gluta_reduc_2 glutat 97.6 0.00044 9.6E-09 72.6 11.8 98 51-226 167-264 (446)
296 PRK12771 putative glutamate sy 97.6 0.0024 5.2E-08 69.1 17.5 37 49-87 136-173 (564)
297 PRK07818 dihydrolipoamide dehy 97.6 0.00071 1.5E-08 71.5 13.0 101 51-226 173-274 (466)
298 PRK05976 dihydrolipoamide dehy 97.6 0.0011 2.4E-08 70.1 13.7 100 51-226 181-282 (472)
299 PRK06115 dihydrolipoamide dehy 97.6 0.0014 3.1E-08 69.2 14.5 102 51-226 175-277 (466)
300 TIGR03385 CoA_CoA_reduc CoA-di 97.5 0.0013 2.8E-08 68.6 13.9 107 51-238 138-245 (427)
301 PRK14727 putative mercuric red 97.5 0.00084 1.8E-08 71.2 12.5 96 51-226 189-284 (479)
302 PRK06912 acoL dihydrolipoamide 97.5 0.0012 2.6E-08 69.5 13.6 98 51-226 171-269 (458)
303 PF06100 Strep_67kDa_ant: Stre 97.5 0.0022 4.7E-08 66.4 14.8 63 159-223 204-272 (500)
304 TIGR01421 gluta_reduc_1 glutat 97.5 0.0013 2.9E-08 69.0 13.7 98 51-226 167-266 (450)
305 PLN02507 glutathione reductase 97.5 0.00081 1.7E-08 71.6 12.1 97 51-226 204-301 (499)
306 PRK07845 flavoprotein disulfid 97.5 0.0009 1.9E-08 70.7 12.4 97 51-226 178-275 (466)
307 TIGR02374 nitri_red_nirB nitri 97.5 0.0011 2.3E-08 74.6 13.3 109 51-237 141-249 (785)
308 PRK14989 nitrite reductase sub 97.5 0.0013 2.9E-08 74.1 13.8 112 51-238 146-257 (847)
309 KOG1346 Programmed cell death 97.5 0.00032 7E-09 70.0 7.8 57 173-238 268-324 (659)
310 PRK14694 putative mercuric red 97.5 0.0015 3.3E-08 69.0 13.6 96 51-226 179-274 (468)
311 COG1252 Ndh NADH dehydrogenase 97.5 0.00098 2.1E-08 68.1 11.4 61 160-233 207-268 (405)
312 TIGR01423 trypano_reduc trypan 97.5 0.0013 2.7E-08 69.9 12.5 55 166-226 235-289 (486)
313 PLN02852 ferredoxin-NADP+ redu 97.4 0.00027 5.9E-09 74.5 7.3 41 47-87 23-64 (491)
314 COG1249 Lpd Pyruvate/2-oxoglut 97.4 0.0014 3E-08 68.4 12.4 111 51-238 174-286 (454)
315 PRK08010 pyridine nucleotide-d 97.4 0.0018 4E-08 67.8 13.3 97 51-226 159-255 (441)
316 PRK13984 putative oxidoreducta 97.4 0.00046 1E-08 75.3 9.0 37 49-87 282-319 (604)
317 PRK06327 dihydrolipoamide dehy 97.4 0.0025 5.5E-08 67.5 14.0 101 51-226 184-285 (475)
318 PRK07846 mycothione reductase; 97.4 0.0016 3.5E-08 68.5 12.1 96 51-226 167-263 (451)
319 PRK13512 coenzyme A disulfide 97.3 0.0029 6.4E-08 66.2 12.9 104 51-238 149-253 (438)
320 KOG1276 Protoporphyrinogen oxi 97.3 0.00043 9.3E-09 69.7 6.1 46 47-92 8-54 (491)
321 COG0446 HcaD Uncharacterized N 97.3 0.0029 6.3E-08 65.1 12.5 107 50-234 136-245 (415)
322 TIGR01438 TGR thioredoxin and 97.3 0.0032 7E-08 66.8 13.0 100 51-226 181-280 (484)
323 COG0562 Glf UDP-galactopyranos 97.2 0.00036 7.8E-09 67.8 4.9 36 50-87 1-37 (374)
324 PLN02546 glutathione reductase 97.2 0.0037 8E-08 67.3 13.1 110 51-238 253-364 (558)
325 PRK06467 dihydrolipoamide dehy 97.2 0.0052 1.1E-07 65.0 13.9 112 51-238 175-288 (471)
326 COG3486 IucD Lysine/ornithine 97.2 0.0039 8.4E-08 62.7 11.6 150 49-226 4-158 (436)
327 KOG3855 Monooxygenase involved 97.2 0.0028 6E-08 63.7 10.5 39 46-84 32-72 (481)
328 TIGR03452 mycothione_red mycot 97.1 0.0041 8.9E-08 65.4 11.9 96 51-226 170-266 (452)
329 PTZ00058 glutathione reductase 97.1 0.0063 1.4E-07 65.5 13.3 99 51-226 238-337 (561)
330 PRK06567 putative bifunctional 97.1 0.00062 1.3E-08 76.2 5.1 35 48-84 381-415 (1028)
331 COG1148 HdrA Heterodisulfide r 97.0 0.0007 1.5E-08 69.1 4.6 37 49-87 123-160 (622)
332 TIGR01292 TRX_reduct thioredox 97.0 0.011 2.4E-07 58.0 12.6 97 51-226 142-239 (300)
333 PRK06292 dihydrolipoamide dehy 96.9 0.015 3.2E-07 61.4 13.8 99 51-226 170-269 (460)
334 PRK12814 putative NADPH-depend 96.9 0.0017 3.7E-08 71.4 6.5 37 49-87 192-229 (652)
335 PTZ00318 NADH dehydrogenase-li 96.9 0.01 2.2E-07 62.0 11.8 59 166-237 232-290 (424)
336 PTZ00188 adrenodoxin reductase 96.8 0.0021 4.5E-08 67.2 6.5 38 49-87 38-76 (506)
337 PF01593 Amino_oxidase: Flavin 96.7 0.00088 1.9E-08 68.9 2.9 47 170-223 217-263 (450)
338 PF00996 GDI: GDP dissociation 96.7 0.041 8.9E-07 57.1 15.0 61 152-219 223-283 (438)
339 TIGR03140 AhpF alkyl hydropero 96.7 0.02 4.4E-07 61.2 13.2 98 51-226 353-451 (515)
340 PRK10262 thioredoxin reductase 96.7 0.02 4.4E-07 57.2 12.2 102 51-226 147-249 (321)
341 PTZ00153 lipoamide dehydrogena 96.6 0.021 4.5E-07 62.7 12.7 32 51-84 313-344 (659)
342 KOG1800 Ferredoxin/adrenodoxin 96.6 0.0018 3.9E-08 64.3 4.1 36 49-84 19-54 (468)
343 KOG3851 Sulfide:quinone oxidor 96.6 0.02 4.3E-07 55.9 10.9 39 44-82 33-71 (446)
344 PLN02976 amine oxidase 96.5 0.0037 7.9E-08 72.3 5.8 40 49-90 692-732 (1713)
345 PRK11749 dihydropyrimidine deh 96.4 0.038 8.2E-07 58.2 12.5 32 50-83 273-305 (457)
346 TIGR03169 Nterm_to_SelD pyridi 96.4 0.051 1.1E-06 55.3 13.1 58 167-237 196-253 (364)
347 KOG3923 D-aspartate oxidase [A 96.3 0.032 6.8E-07 54.0 9.9 36 49-84 2-43 (342)
348 COG0493 GltD NADPH-dependent g 96.3 0.0068 1.5E-07 63.4 5.9 36 50-87 123-159 (457)
349 PRK12770 putative glutamate sy 96.3 0.035 7.6E-07 56.3 11.0 31 51-83 173-204 (352)
350 PRK15317 alkyl hydroperoxide r 96.2 0.056 1.2E-06 57.9 12.6 98 51-226 352-450 (517)
351 KOG1336 Monodehydroascorbate/f 96.1 0.11 2.4E-06 53.6 13.3 60 161-225 254-313 (478)
352 PRK12831 putative oxidoreducta 95.9 0.092 2E-06 55.4 12.4 32 50-83 281-312 (464)
353 TIGR01372 soxA sarcosine oxida 95.9 0.08 1.7E-06 61.2 12.9 64 171-238 360-423 (985)
354 COG3486 IucD Lysine/ornithine 95.8 0.23 4.9E-06 50.4 13.8 49 174-223 290-338 (436)
355 KOG1336 Monodehydroascorbate/f 95.4 0.06 1.3E-06 55.4 8.2 43 173-224 138-180 (478)
356 KOG0399 Glutamate synthase [Am 95.0 0.036 7.8E-07 62.0 5.7 37 49-87 1784-1821(2142)
357 TIGR01318 gltD_gamma_fam gluta 94.5 0.35 7.6E-06 51.1 11.6 32 50-83 282-314 (467)
358 KOG1346 Programmed cell death 94.2 0.1 2.2E-06 52.7 6.2 62 169-238 400-461 (659)
359 COG1251 NirB NAD(P)H-nitrite r 94.1 0.21 4.5E-06 54.2 8.6 66 167-240 192-257 (793)
360 TIGR03143 AhpF_homolog putativ 93.8 0.77 1.7E-05 49.7 12.6 32 51-84 144-175 (555)
361 PLN02852 ferredoxin-NADP+ redu 93.8 0.52 1.1E-05 50.0 10.9 22 50-71 166-187 (491)
362 PF01210 NAD_Gly3P_dh_N: NAD-d 93.7 0.079 1.7E-06 47.2 4.1 31 52-84 1-31 (157)
363 PRK12779 putative bifunctional 93.7 0.75 1.6E-05 52.9 12.7 31 51-83 448-478 (944)
364 PRK09853 putative selenate red 93.4 0.89 1.9E-05 52.1 12.5 34 50-84 668-702 (1019)
365 COG1748 LYS9 Saccharopine dehy 93.0 0.24 5.2E-06 50.5 6.7 34 50-84 1-34 (389)
366 PF02737 3HCDH_N: 3-hydroxyacy 92.8 0.14 3.1E-06 46.7 4.4 31 52-84 1-31 (180)
367 COG0446 HcaD Uncharacterized N 92.8 0.64 1.4E-05 47.6 9.7 43 173-225 64-106 (415)
368 PRK01438 murD UDP-N-acetylmura 92.6 0.2 4.4E-06 53.1 5.8 33 50-84 16-48 (480)
369 PF02558 ApbA: Ketopantoate re 92.5 0.18 3.9E-06 44.2 4.5 31 53-85 1-31 (151)
370 PRK05329 anaerobic glycerol-3- 92.5 0.14 2.9E-06 53.3 4.2 35 49-85 1-35 (422)
371 COG0569 TrkA K+ transport syst 92.5 0.18 3.9E-06 47.8 4.7 32 51-84 1-32 (225)
372 TIGR03467 HpnE squalene-associ 92.4 0.38 8.2E-06 49.5 7.5 63 154-223 189-252 (419)
373 KOG2755 Oxidoreductase [Genera 92.1 0.11 2.4E-06 49.4 2.7 33 53-85 2-34 (334)
374 PRK02705 murD UDP-N-acetylmura 92.0 0.18 3.8E-06 53.2 4.5 31 52-84 2-32 (459)
375 PRK05708 2-dehydropantoate 2-r 91.8 0.23 5E-06 49.4 4.8 33 50-84 2-34 (305)
376 COG1179 Dinucleotide-utilizing 91.8 0.52 1.1E-05 44.5 6.7 37 50-87 30-66 (263)
377 TIGR03315 Se_ygfK putative sel 91.4 3 6.6E-05 48.0 13.6 34 50-84 666-700 (1012)
378 PF03721 UDPG_MGDP_dh_N: UDP-g 91.1 0.22 4.7E-06 45.7 3.6 32 51-84 1-32 (185)
379 PF00743 FMO-like: Flavin-bind 91.0 0.81 1.8E-05 49.1 8.2 34 49-84 182-215 (531)
380 PF13241 NAD_binding_7: Putati 90.1 0.42 9E-06 39.2 4.0 34 49-84 6-39 (103)
381 PRK06249 2-dehydropantoate 2-r 90.0 0.47 1E-05 47.3 5.1 34 50-85 5-38 (313)
382 PRK04965 NADH:flavorubredoxin 90.0 0.39 8.5E-06 49.1 4.7 32 51-84 142-173 (377)
383 PRK06129 3-hydroxyacyl-CoA deh 89.9 0.41 8.9E-06 47.6 4.6 32 51-84 3-34 (308)
384 PRK09754 phenylpropionate diox 89.9 0.4 8.6E-06 49.5 4.6 32 51-84 145-176 (396)
385 PRK12921 2-dehydropantoate 2-r 89.5 0.46 9.9E-06 47.0 4.6 30 52-83 2-31 (305)
386 KOG2495 NADH-dehydrogenase (ub 89.4 1.2 2.7E-05 45.5 7.4 55 164-225 275-329 (491)
387 COG4716 Myosin-crossreactive a 89.3 1.9 4.1E-05 43.4 8.4 34 159-192 224-257 (587)
388 PRK08229 2-dehydropantoate 2-r 89.3 0.51 1.1E-05 47.5 4.8 33 50-84 2-34 (341)
389 PRK06522 2-dehydropantoate 2-r 89.3 0.51 1.1E-05 46.5 4.7 31 52-84 2-32 (304)
390 PF13738 Pyr_redox_3: Pyridine 89.2 0.52 1.1E-05 43.3 4.5 34 49-84 166-199 (203)
391 PRK07819 3-hydroxybutyryl-CoA 89.0 0.65 1.4E-05 45.7 5.2 32 51-84 6-37 (286)
392 TIGR01470 cysG_Nterm siroheme 88.9 0.6 1.3E-05 43.5 4.6 32 50-83 9-40 (205)
393 PRK08293 3-hydroxybutyryl-CoA 88.8 0.57 1.2E-05 46.1 4.7 32 51-84 4-35 (287)
394 PRK14106 murD UDP-N-acetylmura 88.6 0.59 1.3E-05 49.1 4.9 33 50-84 5-37 (450)
395 PRK12810 gltD glutamate syntha 88.5 0.5 1.1E-05 50.0 4.3 46 425-476 424-469 (471)
396 TIGR02053 MerA mercuric reduct 88.5 0.55 1.2E-05 49.5 4.6 32 51-84 167-198 (463)
397 PLN02353 probable UDP-glucose 88.3 0.68 1.5E-05 48.9 5.1 34 51-84 2-35 (473)
398 PRK07530 3-hydroxybutyryl-CoA 88.3 0.7 1.5E-05 45.5 4.9 32 51-84 5-36 (292)
399 PRK09260 3-hydroxybutyryl-CoA 88.2 0.67 1.4E-05 45.6 4.7 32 51-84 2-33 (288)
400 TIGR02354 thiF_fam2 thiamine b 87.9 0.76 1.6E-05 42.7 4.5 35 50-86 21-56 (200)
401 PRK13984 putative oxidoreducta 87.8 0.58 1.2E-05 51.2 4.3 40 426-472 563-602 (604)
402 PRK06719 precorrin-2 dehydroge 87.7 0.88 1.9E-05 40.5 4.7 32 49-82 12-43 (157)
403 PRK07066 3-hydroxybutyryl-CoA 87.5 0.97 2.1E-05 45.2 5.4 32 51-84 8-39 (321)
404 PF00056 Ldh_1_N: lactate/mala 87.4 1.1 2.3E-05 39.2 4.9 34 51-84 1-35 (141)
405 cd05292 LDH_2 A subgroup of L- 87.4 0.8 1.7E-05 45.6 4.7 32 51-84 1-34 (308)
406 PF01262 AlaDh_PNT_C: Alanine 87.3 0.81 1.8E-05 41.1 4.3 33 50-84 20-52 (168)
407 PRK06718 precorrin-2 dehydroge 87.3 0.96 2.1E-05 42.0 4.9 33 49-83 9-41 (202)
408 PRK06035 3-hydroxyacyl-CoA deh 87.2 0.8 1.7E-05 45.1 4.6 32 51-84 4-35 (291)
409 PRK14618 NAD(P)H-dependent gly 87.1 0.95 2.1E-05 45.4 5.1 33 50-84 4-36 (328)
410 PRK06567 putative bifunctional 87.0 2.3 4.9E-05 48.6 8.4 52 171-222 649-725 (1028)
411 PRK14620 NAD(P)H-dependent gly 86.9 0.84 1.8E-05 45.7 4.6 31 52-84 2-32 (326)
412 TIGR01763 MalateDH_bact malate 86.9 0.86 1.9E-05 45.3 4.6 31 51-83 2-33 (305)
413 COG3634 AhpF Alkyl hydroperoxi 86.7 0.5 1.1E-05 46.9 2.7 32 49-82 353-384 (520)
414 PF01488 Shikimate_DH: Shikima 86.6 1.4 3E-05 38.1 5.2 34 49-84 11-45 (135)
415 PRK06130 3-hydroxybutyryl-CoA 86.4 1.1 2.4E-05 44.5 5.2 33 50-84 4-36 (311)
416 PRK12769 putative oxidoreducta 86.4 0.75 1.6E-05 50.8 4.3 39 429-472 614-652 (654)
417 PRK09424 pntA NAD(P) transhydr 86.3 0.9 2E-05 48.3 4.6 32 50-83 165-196 (509)
418 PF00899 ThiF: ThiF family; I 86.2 0.96 2.1E-05 38.9 4.0 36 50-87 2-38 (135)
419 PRK15116 sulfur acceptor prote 86.2 1 2.2E-05 43.8 4.5 35 50-86 30-65 (268)
420 TIGR00518 alaDH alanine dehydr 86.1 0.96 2.1E-05 46.3 4.6 33 50-84 167-199 (370)
421 PRK05808 3-hydroxybutyryl-CoA 85.9 1.2 2.5E-05 43.7 4.9 32 51-84 4-35 (282)
422 PRK00094 gpsA NAD(P)H-dependen 85.9 1.1 2.4E-05 44.7 4.8 32 51-84 2-33 (325)
423 COG0686 Ald Alanine dehydrogen 85.8 0.72 1.6E-05 45.2 3.2 34 49-84 167-200 (371)
424 PTZ00082 L-lactate dehydrogena 85.6 1.5 3.2E-05 44.0 5.5 34 49-84 5-39 (321)
425 PRK12475 thiamine/molybdopteri 85.6 1.1 2.4E-05 45.1 4.7 37 49-87 23-60 (338)
426 PF02254 TrkA_N: TrkA-N domain 85.5 1.3 2.9E-05 36.7 4.4 30 53-84 1-30 (116)
427 COG1004 Ugd Predicted UDP-gluc 85.4 0.98 2.1E-05 45.8 4.1 32 51-84 1-32 (414)
428 PRK14619 NAD(P)H-dependent gly 85.0 1.4 3.1E-05 43.7 5.2 35 49-85 3-37 (308)
429 PRK12809 putative oxidoreducta 85.0 1.2 2.7E-05 49.0 5.1 43 426-474 595-637 (639)
430 PRK07688 thiamine/molybdopteri 84.2 1.5 3.2E-05 44.3 4.9 37 49-87 23-60 (339)
431 cd01483 E1_enzyme_family Super 84.1 1.6 3.5E-05 37.8 4.5 34 52-87 1-35 (143)
432 PTZ00052 thioredoxin reductase 84.1 1.4 3E-05 47.0 4.8 32 51-84 183-214 (499)
433 cd05293 LDH_1 A subgroup of L- 84.0 1.8 3.9E-05 43.2 5.3 35 50-84 3-37 (312)
434 PLN02545 3-hydroxybutyryl-CoA 84.0 1.7 3.7E-05 42.8 5.1 32 51-84 5-36 (295)
435 PRK13748 putative mercuric red 83.6 1.4 3E-05 47.7 4.7 32 51-84 271-302 (561)
436 TIGR01316 gltA glutamate synth 83.6 1.3 2.8E-05 46.6 4.3 32 51-84 273-304 (449)
437 COG1893 ApbA Ketopantoate redu 83.6 1.4 3.1E-05 43.8 4.4 33 51-85 1-33 (307)
438 TIGR03385 CoA_CoA_reduc CoA-di 83.5 2.8 6E-05 43.6 6.8 47 173-225 55-103 (427)
439 TIGR01317 GOGAT_sm_gam glutama 83.3 1.4 2.9E-05 46.9 4.4 41 429-474 441-481 (485)
440 PRK04148 hypothetical protein; 83.1 1.1 2.4E-05 38.6 3.0 31 51-84 18-48 (134)
441 TIGR03026 NDP-sugDHase nucleot 83.1 1.5 3.2E-05 45.6 4.4 31 52-84 2-32 (411)
442 cd00401 AdoHcyase S-adenosyl-L 83.1 1.6 3.5E-05 45.2 4.6 33 50-84 202-234 (413)
443 PRK12778 putative bifunctional 82.8 1.9 4.2E-05 48.5 5.6 40 429-473 712-751 (752)
444 cd01487 E1_ThiF_like E1_ThiF_l 82.8 1.9 4.1E-05 39.1 4.5 33 52-86 1-34 (174)
445 PRK06223 malate dehydrogenase; 82.7 1.7 3.7E-05 43.1 4.6 32 51-84 3-35 (307)
446 TIGR02356 adenyl_thiF thiazole 82.7 1.9 4.2E-05 40.0 4.6 36 49-86 20-56 (202)
447 cd05311 NAD_bind_2_malic_enz N 82.5 2 4.4E-05 40.7 4.8 33 50-84 25-60 (226)
448 KOG2304 3-hydroxyacyl-CoA dehy 82.0 1.6 3.4E-05 40.9 3.6 36 47-84 8-43 (298)
449 PRK12549 shikimate 5-dehydroge 81.9 1.9 4.2E-05 42.3 4.5 33 50-84 127-160 (284)
450 TIGR02279 PaaC-3OHAcCoADH 3-hy 81.6 2.1 4.5E-05 45.7 5.0 33 50-84 5-37 (503)
451 TIGR02437 FadB fatty oxidation 81.4 2.8 6.1E-05 46.7 6.1 34 49-84 312-345 (714)
452 COG0099 RpsM Ribosomal protein 81.4 2 4.3E-05 35.9 3.7 39 358-396 24-62 (121)
453 cd01080 NAD_bind_m-THF_DH_Cycl 81.3 2.7 5.9E-05 37.8 4.9 34 49-84 43-77 (168)
454 PRK12775 putative trifunctiona 81.1 2 4.3E-05 49.9 4.9 41 428-473 716-756 (1006)
455 PF03446 NAD_binding_2: NAD bi 81.1 2.3 4.9E-05 37.9 4.4 33 50-84 1-33 (163)
456 TIGR03736 PRTRC_ThiF PRTRC sys 81.0 2.2 4.7E-05 40.9 4.4 38 49-86 10-56 (244)
457 PRK11064 wecC UDP-N-acetyl-D-m 81.0 2 4.3E-05 44.7 4.5 32 51-84 4-35 (415)
458 PF03435 Saccharop_dh: Sacchar 80.7 2.8 6.1E-05 43.0 5.5 119 53-183 1-122 (386)
459 PRK00066 ldh L-lactate dehydro 80.6 3.1 6.7E-05 41.5 5.5 33 50-84 6-40 (315)
460 cd05291 HicDH_like L-2-hydroxy 80.5 2.3 5.1E-05 42.2 4.7 31 52-84 2-34 (306)
461 PRK11730 fadB multifunctional 80.4 2.5 5.3E-05 47.3 5.2 33 50-84 313-345 (715)
462 PRK08644 thiamine biosynthesis 80.3 2.7 5.8E-05 39.4 4.7 36 49-86 27-63 (212)
463 PRK02472 murD UDP-N-acetylmura 80.3 2.2 4.8E-05 44.7 4.6 32 51-84 6-37 (447)
464 PRK07531 bifunctional 3-hydrox 80.3 2.6 5.6E-05 44.9 5.2 32 51-84 5-36 (495)
465 PRK08268 3-hydroxy-acyl-CoA de 79.9 2.8 6.2E-05 44.7 5.3 32 51-84 8-39 (507)
466 TIGR00561 pntA NAD(P) transhyd 79.9 2.3 5.1E-05 45.1 4.6 33 50-84 164-196 (511)
467 cd01075 NAD_bind_Leu_Phe_Val_D 79.7 3 6.6E-05 38.6 4.8 32 50-83 28-59 (200)
468 TIGR02355 moeB molybdopterin s 79.7 2.8 6.2E-05 40.0 4.8 38 49-87 23-60 (240)
469 COG5044 MRS6 RAB proteins gera 79.6 3.2 6.9E-05 41.8 5.1 37 49-87 5-42 (434)
470 PRK08328 hypothetical protein; 79.5 2.9 6.4E-05 39.7 4.8 36 49-86 26-62 (231)
471 PTZ00117 malate dehydrogenase; 79.5 3.3 7.2E-05 41.4 5.4 34 49-84 4-38 (319)
472 PRK07502 cyclohexadienyl dehyd 79.2 3.1 6.8E-05 41.2 5.1 33 50-84 6-40 (307)
473 cd01339 LDH-like_MDH L-lactate 79.0 2.2 4.8E-05 42.2 3.9 30 53-84 1-31 (300)
474 TIGR02441 fa_ox_alpha_mit fatt 78.9 3.4 7.4E-05 46.2 5.8 33 50-84 335-367 (737)
475 PRK07417 arogenate dehydrogena 78.9 2.6 5.7E-05 41.2 4.4 31 52-84 2-32 (279)
476 TIGR01915 npdG NADPH-dependent 78.6 3.2 6.9E-05 39.0 4.7 31 52-84 2-33 (219)
477 PRK03369 murD UDP-N-acetylmura 78.5 2.5 5.5E-05 44.9 4.4 32 51-84 13-44 (488)
478 PF13478 XdhC_C: XdhC Rossmann 78.1 2.2 4.8E-05 37.0 3.2 30 53-84 1-31 (136)
479 PF10727 Rossmann-like: Rossma 78.0 1.3 2.9E-05 37.9 1.7 34 47-82 7-40 (127)
480 PRK05690 molybdopterin biosynt 77.9 3.4 7.4E-05 39.6 4.7 36 49-86 31-67 (245)
481 PRK05562 precorrin-2 dehydroge 77.4 3.7 8E-05 38.7 4.6 32 49-82 24-55 (223)
482 CHL00137 rps13 ribosomal prote 77.2 2.5 5.5E-05 35.8 3.2 39 358-396 24-62 (122)
483 PRK05179 rpsM 30S ribosomal pr 77.1 2.8 6.1E-05 35.5 3.4 39 358-396 24-62 (122)
484 PRK15057 UDP-glucose 6-dehydro 77.1 3.4 7.3E-05 42.6 4.7 30 52-84 2-31 (388)
485 COG1250 FadB 3-hydroxyacyl-CoA 76.9 3 6.6E-05 41.3 4.1 33 50-84 3-35 (307)
486 PRK08306 dipicolinate synthase 76.9 3.9 8.5E-05 40.4 4.9 33 50-84 152-184 (296)
487 PRK09496 trkA potassium transp 76.8 3.4 7.4E-05 43.2 4.8 31 52-84 2-32 (453)
488 PRK04308 murD UDP-N-acetylmura 76.5 3.8 8.2E-05 43.0 5.0 31 51-83 6-36 (445)
489 PRK12814 putative NADPH-depend 76.5 2.8 6.1E-05 46.3 4.2 44 429-477 463-506 (652)
490 PTZ00325 malate dehydrogenase; 76.5 4.7 0.0001 40.3 5.4 37 47-83 5-42 (321)
491 cd01078 NAD_bind_H4MPT_DH NADP 76.4 4.3 9.4E-05 37.2 4.8 32 50-83 28-60 (194)
492 cd05191 NAD_bind_amino_acid_DH 76.2 6.2 0.00014 30.9 5.1 33 50-83 23-55 (86)
493 KOG4405 GDP dissociation inhib 76.1 3 6.4E-05 42.5 3.8 39 47-87 5-44 (547)
494 cd00755 YgdL_like Family of ac 76.0 3.5 7.6E-05 39.2 4.2 36 50-87 11-47 (231)
495 TIGR03378 glycerol3P_GlpB glyc 76.0 2.4 5.2E-05 44.0 3.2 33 51-85 1-33 (419)
496 cd05290 LDH_3 A subgroup of L- 75.7 3.6 7.9E-05 40.9 4.4 32 52-83 1-32 (307)
497 PRK10669 putative cation:proto 75.1 4.4 9.6E-05 43.9 5.2 34 49-84 416-449 (558)
498 cd01485 E1-1_like Ubiquitin ac 75.0 4.7 0.0001 37.3 4.7 35 50-86 19-54 (198)
499 COG3075 GlpB Anaerobic glycero 74.9 0.66 1.4E-05 45.8 -1.1 34 49-84 1-34 (421)
500 cd00757 ThiF_MoeB_HesA_family 74.8 4.5 9.7E-05 38.3 4.6 36 49-86 20-56 (228)
No 1
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=100.00 E-value=3.9e-92 Score=687.54 Aligned_cols=397 Identities=35% Similarity=0.560 Sum_probs=366.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
+.+||+||||||||||||+.+++ +|.+|+|||+ ..+|+|++++|+||||+||... +.+|..+|+.+.+++ ++.+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~--~~~~ls~~p~~~~fl-~sal 76 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA--PDEFLSRNPGNGHFL-KSAL 76 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCccccceeEecCCCCcccccccc--HHHHHHhCCCcchHH-HHHH
Confidence 46899999999999999999999 8999999995 4899999999999999999865 558999998877665 6778
Q ss_pred hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN 207 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~ 207 (481)
.+|+++|+++|++.+|+++++++.|++||.++++++++++|+.++++.||+|+++++|.+++.++ ..+.+.+.+
T Consensus 77 ~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~---- 150 (408)
T COG2081 77 ARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSS---- 150 (408)
T ss_pred HhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCC----
Confidence 99999999999999999999999999999999999999999999999999999999999999875 789999886
Q ss_pred ceEEEEcCeEEEccC--------CChhHHHHHHHcCCCcccCCCceeEeeeCccccccccCceeccEEEEEEecCccCCC
Q 011610 208 LVECIEADYLLIASG--------SSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSS 279 (481)
Q Consensus 208 ~~~~i~ad~VIlAtG--------~~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~ 279 (481)
+.+|+||.+|+||| +++++|.+|+++||+|++++|++|||.+.++.++.|+|++++++.+++..+.
T Consensus 151 -g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I~~~rpalvpft~~~~~~~~l~gls~~~v~~~v~~~~----- 224 (408)
T COG2081 151 -GETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTITPLRPALVPFTLDESFLERLAGLSLKSVPLSVTAGK----- 224 (408)
T ss_pred -CCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCccccCccccCCccCCHHHHHHhcCCcccceEEEEecCC-----
Confidence 55899999999998 3678999999999999999999999999998889999999998887775432
Q ss_pred CccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccch
Q 011610 280 PYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCL 359 (481)
Q Consensus 280 ~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l 359 (481)
-....||+||||+|||||+||++|+++. + .+.++...+.||++|+.+.+++.+.+ ...++++++.+.|.. .|
T Consensus 225 -g~~~~g~~LfTh~GiSGPavl~~Ss~~~-~-~~~~~~~~i~iDllP~~~~~~l~~~l---~~~~~~kslkn~L~~--~l 296 (408)
T COG2081 225 -GITFQGDLLFTHRGLSGPAVLQLSSYWR-L-LEKKGGATLSIDLLPDVDAEELLREL---RRANPKKSLKNALAK--LL 296 (408)
T ss_pred -CceeecceEEEecCCcHHHHHHHHHHHH-H-hccCCCceEEEecCCCCCHHHHHHHH---HhhChhhHHHHHHHH--Hh
Confidence 1567799999999999999999999975 3 44455689999999999999987777 567888999999988 99
Q ss_pred hHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEE
Q 011610 360 VKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAG 439 (481)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~G 439 (481)
|+|+++.++++.+| ++..+.++++++.+.|++.||+|+|++.|+++|++|+||+|||+++|||++|||||.+|||||||
T Consensus 297 p~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~A~VT~GGV~~~eid~kTmesk~vPGLyf~G 375 (408)
T COG2081 297 PKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKAWPITPNGTEPYREAEVTAGGVDTKEIDSKTMESKKVPGLYFAG 375 (408)
T ss_pred hhHHHHHHHHhccC-CCcchhhcCHHHHHHHHHHHhcCeeeccCCcccceeEEecCceehhhcCHHHHHhhcCCCcEEEE
Confidence 99999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccCcchHHHHHHHHHHHHHHHHHhHHh
Q 011610 440 EVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLS 471 (481)
Q Consensus 440 E~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~ 471 (481)
|||||+|+||||||||||+||++||+.++++.
T Consensus 376 EvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 376 EVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred EEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999998764
No 2
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=100.00 E-value=6.9e-92 Score=716.45 Aligned_cols=397 Identities=39% Similarity=0.613 Sum_probs=322.5
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
|||+|||||||||+||+.|++ .|.+|+|+|++ .+|+|+++||+||||++|.. .+...|...|..+. .+....+..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~--~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~-~~~~~~~~~~~~~~-~f~~~~l~~ 76 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAE--KGARVLVLERNKRVGKKILITGNGRCNLTNLN-IDPSEFLSGYGRNP-KFLKSALKR 76 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHH--TT--EEEE-SSSSS-HHHHHCGGGT-EEEETT-SSGGGEECS-TBTT-TCTHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCcccccceeecCCCCccccccc-cchhhHhhhcccch-HHHHHHHhc
Confidence 799999999999999999999 79999999965 88999999999999999943 34445666665544 455677899
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
|++.++++||+++|+++..++++++||.++++.+++++|++++++.||+|+++++|.+|+.++ ++.+.|++++ .
T Consensus 77 f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~~f~v~~~~-----~ 150 (409)
T PF03486_consen 77 FSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE-DGVFGVKTKN-----G 150 (409)
T ss_dssp S-HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET-TEEEEEEETT-----T
T ss_pred CCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC-CceeEeeccC-----c
Confidence 999999999999999999988999999999999999999999999999999999999999876 4568999943 6
Q ss_pred EEEEcCeEEEccC--------CChhHHHHHHHcCCCcccCCCceeEeeeCcccc--ccccCceeccEEEEEEecCccCCC
Q 011610 210 ECIEADYLLIASG--------SSQQGHRLAAQLGHSIVDPVPSLFTFKIADSQL--TELSGVSFPKVVAKLKLENVQRSS 279 (481)
Q Consensus 210 ~~i~ad~VIlAtG--------~~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~--~~l~G~~~~~~~~~~~~~~~~~~~ 279 (481)
..+.||.||+||| ++|++|.+|+++||+++++.|++|++++.+++. +.|+|++++++...+ ++ +
T Consensus 151 ~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i~~~~PaL~~l~~~~~~~~~~~l~Gv~~~~~~~~~--~~----~ 224 (409)
T PF03486_consen 151 GEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTITPPYPALVPLKCDEPWLFFKELSGVRLKAVISLL--DG----K 224 (409)
T ss_dssp EEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--EEEEEEES--EE--HHHHHTGGGTT-EEEEEEEEE---E----C
T ss_pred ccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcEecCCCccCCeeecchhhhhhhhCCCceeeEEEEe--cc----C
Confidence 7999999999987 478899999999999999999999999999877 999999998655444 43 3
Q ss_pred CccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccch
Q 011610 280 PYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCL 359 (481)
Q Consensus 280 ~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l 359 (481)
...++.||++|||||+|||+||++|+++.+++.+ ++++.+.|||+|+++.++++++|.++...++++++.+++.. .|
T Consensus 225 ~~~~~~GellfT~~GiSGp~il~lS~~~~~~l~~-~~~~~i~id~~p~~~~e~l~~~l~~~~~~~~~~~~~~~l~~--~l 301 (409)
T PF03486_consen 225 KKASETGELLFTHYGISGPAILQLSRFIARALNK-KKKVEISIDFLPDLSEEELEELLQERKEKNPKRTLKNFLKG--LL 301 (409)
T ss_dssp TCEEEEEEEEE-SSEEESHHHHHHTTTHHHHHH---TTEEEEEESSTTS-HHHHHHHHHHHHHHTTTSBHHHHHTT--TS
T ss_pred CccceeeeEEEECCccchHHHHHHHHHHHHHHHh-cCCceEEEEeCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH--Hh
Confidence 4678999999999999999999999999888764 45689999999999999999999999999999999999998 99
Q ss_pred hHHHHHHHHHhcCC-CCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEE
Q 011610 360 VKRFWKYILGREGL-SGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFA 438 (481)
Q Consensus 360 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~ 438 (481)
|+|++..+++.+++ ++++++++++++++++|++.||+|+|+|+|+.+|++||||+|||+++||||+|||||.+||||||
T Consensus 302 p~rl~~~ll~~~~i~~~~~~~~~l~~~~~~~L~~~lk~~~~~v~g~~~~~~A~VT~GGV~~~eid~~TmeSk~~~gLyf~ 381 (409)
T PF03486_consen 302 PKRLALALLKRAGIKDPDKKVSELSKKERNRLANLLKRFPFTVTGTGGFDKAQVTAGGVDLKEIDPKTMESKLVPGLYFA 381 (409)
T ss_dssp -HHHHHHHHHHTTS-STTSBGGGS-HHHHHHHHHHHHCEEEEESEE--TTT-SEEEEEE-GGGB-TTT-BBSSSTTEEE-
T ss_pred HHHHHHHHHHHcCCCccccchhhcCHHHHHHHHHHHHhCceeecccCCCceEEEECCCcCHHHCCHhhhcccCCCCeEEE
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccCcchHHHHHHHHHHHHHHHH
Q 011610 439 GEVLNVDGVTGGFNFQNAWSGGYIAGTS 466 (481)
Q Consensus 439 GE~ldv~g~~GGynl~~A~~sG~~AG~~ 466 (481)
||+|||||+||||||||||+|||+||+.
T Consensus 382 GEvLDvdG~~GGYNLq~AwsSG~~Ag~~ 409 (409)
T PF03486_consen 382 GEVLDVDGPCGGYNLQWAWSSGYLAGKY 409 (409)
T ss_dssp GGGBSEEE-TTTHHHHHHHHHHHHHHH-
T ss_pred EEEEEeccCcCchhHhHHHHHHHHhhCC
Confidence 9999999999999999999999999974
No 3
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=100.00 E-value=3.4e-79 Score=628.51 Aligned_cols=391 Identities=42% Similarity=0.646 Sum_probs=350.2
Q ss_pred EEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcCCh
Q 011610 54 VVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGP 132 (481)
Q Consensus 54 vIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 132 (481)
+|||||++|++||+.|++ .|.+|+|+|++ .+|+++.++|+|+||++|.... ..+...|..+. .+....+..|+.
T Consensus 1 vIIGgG~aGl~aAi~aa~--~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~--~~~~~~~~~~~-~~~~~~l~~~~~ 75 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR--EGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPT--PEFVAYYPRNG-KFLRSALSRFSN 75 (400)
T ss_pred CEEEEeHHHHHHHHHHHh--cCCcEEEEecCccccccccccCCceEEccCCCcc--hhHHHhcCCCc-HHHHHHHHhCCH
Confidence 699999999999999999 78999999965 6889999999999999986432 24545555443 444566788899
Q ss_pred HHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEE
Q 011610 133 MDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECI 212 (481)
Q Consensus 133 ~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i 212 (481)
.++.+|+.+.|+++..++.+++||.++.+.++++.|.+.+++.|++++++++|+++..++ +.+.|+++ +..+
T Consensus 76 ~d~~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~~v~~~------~~~i 147 (400)
T TIGR00275 76 KDLIDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NGFGVETS------GGEY 147 (400)
T ss_pred HHHHHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--CeEEEEEC------CcEE
Confidence 999999999999998888899999988999999999999999999999999999997754 56777764 4579
Q ss_pred EcCeEEEccCC--------ChhHHHHHHHcCCCcccCCCceeEeeeCccccccccCceeccEEEEEEecCccCCCCccce
Q 011610 213 EADYLLIASGS--------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQ 284 (481)
Q Consensus 213 ~ad~VIlAtG~--------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~ 284 (481)
.||.||+|+|+ +|+++.+++++||+++++.|+++++.++++..+.++|++++++ +.++.++ ++..++
T Consensus 148 ~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~i~~~~P~l~~l~~~~~~~~~l~Gv~~~~~-~~~~~~~----~~~~~~ 222 (400)
T TIGR00275 148 EADKVILATGGLSYPQLGSTGDGYEIAESLGHTIVPPVPALVPLTLDESFLKELSGISLDGV-VLSLVNG----KKVLEE 222 (400)
T ss_pred EcCEEEECCCCcccCCCCCCcHHHHHHHHCCCCEecccceEeEEEeCCcccccCCCCcCccE-EEEecCC----cEEEee
Confidence 99999999994 6789999999999999999999999999988899999999765 3344444 345678
Q ss_pred ecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHH
Q 011610 285 VGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFW 364 (481)
Q Consensus 285 ~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 364 (481)
.||++|||||+|||+||++|+++.+.+. .++.+.+.|||+|+++.+++.++|.++...++++++.+++.. +||+|++
T Consensus 223 ~g~llft~~gisG~~vl~~s~~~~~~~~-~~~~~~~~id~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~ 299 (400)
T TIGR00275 223 FGDLLFTHFGLSGPAILDLSAFAARALL-KHKGVELEIDLLPDLSEEELEQRLKRLRKSNPKKTVKNILKG--LLPKRLA 299 (400)
T ss_pred cccEEEECCCcCHHHHHHHHHHHHHHhh-cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHChhhhHHHHhhh--hhhHHHH
Confidence 8999999999999999999999877663 345678999999999999999999998899999999999988 9999999
Q ss_pred HHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEeec
Q 011610 365 KYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNV 444 (481)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~ldv 444 (481)
+.+++.++|+++++++++++++++.|++.||+|+|+|+|+.+|++||||+|||+++||||.|||||++||||||||+|||
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~g~~~~~~a~vt~GGv~~~ei~~~~m~~k~~~gly~~GE~lDv 379 (400)
T TIGR00275 300 ELLLEQLGIDPDLPAAQLSKKEIKKLVQLLKNWPFTVSGTRGFKEAEVTAGGVSLKEINPKTMESKLVPGLYFAGEVLDV 379 (400)
T ss_pred HHHHHHcCCCCCCChHHCCHHHHHHHHHHHhCCEEEecCcCccceeEEecCcccchhcChhhhhhcCCCCeEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHHHHHHH
Q 011610 445 DGVTGGFNFQNAWSGGYIAGT 465 (481)
Q Consensus 445 ~g~~GGynl~~A~~sG~~AG~ 465 (481)
||+||||||||||+|||+||+
T Consensus 380 ~g~~GGyNlq~a~~sg~~ag~ 400 (400)
T TIGR00275 380 DGDTGGYNLQWAWSSGYLAGK 400 (400)
T ss_pred CCCCCchHHHHHHHHHHHhcC
Confidence 999999999999999999984
No 4
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=100.00 E-value=3e-76 Score=591.71 Aligned_cols=364 Identities=22% Similarity=0.298 Sum_probs=301.2
Q ss_pred CCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcCChHHHHHHHHhcCCcceeecCCe
Q 011610 75 KLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGR 153 (481)
Q Consensus 75 g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~ 153 (481)
|.+|+|+|++ ++|+|+++|||||||+||.... ..+..+|..+. .|...++..|+++|+++||+++|+++..+++|+
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~--~~~~~~~~~~~-~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~gr 77 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPL--PRFIERYGDAA-EWLAPWLEAFDAVALQDWARGLGIETFVGSSGR 77 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCch--HHHHHhcCCch-HHHHHHHHhCCHHHHHHHHHHCCCceEECCCCE
Confidence 4689999965 8999999999999999996432 35666676544 566788999999999999999999999999999
Q ss_pred eeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------Ch
Q 011610 154 VFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------SQ 225 (481)
Q Consensus 154 ~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------~g 225 (481)
+||.++++.+++++|..++++.||+|+++++|++| ++ +.|.|.+.. ....++||+||+|||+ +|
T Consensus 78 vfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~~~v~~~~----~~~~~~a~~vIlAtGG~s~p~~Gs~g 149 (376)
T TIGR03862 78 VFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GTLRFETPD----GQSTIEADAVVLALGGASWSQLGSDG 149 (376)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--CcEEEEECC----CceEEecCEEEEcCCCccccccCCCc
Confidence 99999999999999999999999999999999999 22 457777642 1346999999999995 67
Q ss_pred hHHHHHHHcCCCcccCCCceeEeeeCcc-ccc-cccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhccc
Q 011610 226 QGHRLAAQLGHSIVDPVPSLFTFKIADS-QLT-ELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRL 303 (481)
Q Consensus 226 ~g~~la~~~G~~i~~~~p~l~~~~~~~~-~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~l 303 (481)
+||.+|+++||+++|+.|+++|+.+++. ++. .|+|++++++.+++ +. ..+.||++|||||+|||+||++
T Consensus 150 ~gy~la~~lGh~i~~~~PaL~pl~~~~~~~~~~~L~Gv~~~~~~~~~--~~-------~~~~GellFTh~GiSGpavl~l 220 (376)
T TIGR03862 150 AWQQVLDQRGVSVAPFAPANCGFLVDWSAHFASRFAGEPLKRVNATA--GT-------QQTRGEIVITARGLEGGLIYAL 220 (376)
T ss_pred HHHHHHHHCCCcccCCcCeeceEEccCchhhHhhcCCCcccceEEEe--CC-------eeEeeeEEEECCCccHHHHHHH
Confidence 8999999999999999999999999863 444 59999998766654 21 2457999999999999999999
Q ss_pred chhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCC
Q 011610 304 SAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVS 383 (481)
Q Consensus 304 S~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 383 (481)
|+++.+.+.+ ++.+.+.|||+|+++.+++.+.+.++. +++++.+++.....+|++....+.+ +. .+.+
T Consensus 221 S~~~~~~~~~-~~~~~i~idf~P~~~~~~l~~~l~~~~---~~k~l~~~L~~~~gi~~~~~~~~~~---~~-----~~~~ 288 (376)
T TIGR03862 221 SAALREQIKA-GGSANLFLDLLPDLSLEQVTKRLAAPR---GKQSLSNHLRKALGLDGVKRALLRE---VF-----PKAA 288 (376)
T ss_pred HHHHHHHHhc-CCceEEEEECCCCCCHHHHHHHHHhhc---ccchHHHHHHHHhCCCHHHHHHHHH---Hh-----hccC
Confidence 9997544333 455789999999999999988776533 5666666554311234443322222 11 1123
Q ss_pred HHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHH
Q 011610 384 NNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIA 463 (481)
Q Consensus 384 ~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~A 463 (481)
+++++.|++.||+|+|+|.|+.+|++||||+|||+++|||++ ||||++||||||||+|||||+||||||||||+|||+|
T Consensus 289 ~~~~~~l~~~lk~~~~~v~g~~~~~~A~VT~GGV~~~EI~~~-~~Sk~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~A 367 (376)
T TIGR03862 289 WSQPETLAQTIKALPLPLDGTRPIDEAISTAGGVRQDALDES-LMLKARPGVFCAGEMLDWEAPTGGYLLTACFATGRAA 367 (376)
T ss_pred HHHHHHHHHHHhCCeeeecccCCcceEEEeCCcccHHHcChh-hhcccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999999999965 6699999999999999999999999999999999999
Q ss_pred HHHHhHHh
Q 011610 464 GTSIGKLS 471 (481)
Q Consensus 464 G~~aa~~~ 471 (481)
|++++.+.
T Consensus 368 G~~~~~~~ 375 (376)
T TIGR03862 368 GRGVHSWL 375 (376)
T ss_pred HHHHHHhh
Confidence 99998653
No 5
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.95 E-value=9.6e-27 Score=244.88 Aligned_cols=375 Identities=16% Similarity=0.200 Sum_probs=213.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC---CCCceEEecCCceeeccCCC-----cchhHHhhcc---C-
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK---PLSKVKISGGGRCNVTNGHC-----ADKMILAGHY---P- 116 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~---~g~k~~~sG~g~~n~~~~~~-----~~~~~~~~~~---~- 116 (481)
.++||+|||+|++|++||+.|++ .|.+|+||||.. .|+....+++.+|...+... .+...+...+ .
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~--~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAARE--AGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTG 80 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhC
Confidence 56899999999999999999999 799999999764 45544445444443332110 0111222111 0
Q ss_pred -CCChhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeeec------CCChHHHHHHHHHHHHhCCCEEEcCceEEEEE
Q 011610 117 -RGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPV------SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTAS 189 (481)
Q Consensus 117 -~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~------~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~ 189 (481)
.....+.+.+.. ...+.++|+.++|+++.....+..++. ......+...|.+.+++.|++++++++|++|.
T Consensus 81 ~~~~~~~~~~~~~--~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~ 158 (466)
T PRK08274 81 GRTDEALARLLIR--ESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALE 158 (466)
T ss_pred CCCCHHHHHHHHH--cCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEE
Confidence 112333333322 335778999999988765433322211 12256788899999999999999999999998
Q ss_pred ecCCCCeEEEEEeecccCceEEEEcCeEEEccCC---------------------------ChhHHHHHHHcCCCcccCC
Q 011610 190 SDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS---------------------------SQQGHRLAAQLGHSIVDPV 242 (481)
Q Consensus 190 ~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~---------------------------~g~g~~la~~~G~~i~~~~ 242 (481)
.++ +..+.|.+.. .++....+.|+.||+|||+ +|+|+.++.++|..+....
T Consensus 159 ~~~-g~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~~Ga~~~~~~ 236 (466)
T PRK08274 159 LDD-GRFVGARAGS-AAGGAERIRAKAVVLAAGGFESNREWLREAWGQPADNFLVRGTPYNQGDLLKALLDAGADRIGDP 236 (466)
T ss_pred ecC-CeEEEEEEEc-cCCceEEEECCEEEECCCCCCCCHHHHHhhcCCchhhceecCCCCcccHHHHHHHHcCCCccCCc
Confidence 765 4455666532 2233457899999999983 3678899999998864311
Q ss_pred --CceeEeeeCccccc--cc-cCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCce
Q 011610 243 --PSLFTFKIADSQLT--EL-SGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYK 317 (481)
Q Consensus 243 --p~l~~~~~~~~~~~--~l-~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~ 317 (481)
+..+++....+... .+ .....+ ..+.+..+| +++..+.++..++++...++.+++........+.+....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~vn~~G----~RF~nE~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~ 311 (466)
T PRK08274 237 SQCHAVAIDARAPLYDGGICTRIDCVP-LGIVVNRDG----ERFYDEGEDFWPKRYAIWGRLVAQQPGQIAYQIFDAKAI 311 (466)
T ss_pred cceeeEeecCCCCccCCcceeeecccc-eEEEEcCCC----cEEEecCCccccchHHHHHHHHHcCCCceEEEEeCchhH
Confidence 11112211111100 00 000011 112232233 456666666666777666666554431100000000000
Q ss_pred eEEEEecC---CCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHH------
Q 011610 318 GMLTVDFV---PDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLI------ 388 (481)
Q Consensus 318 ~~~~~d~~---p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 388 (481)
.......+ -.-+.++|.+ +.|++++...+.+ +.++
T Consensus 312 ~~~~~~~~~~~~adtleeLA~----------------------------------~~gi~~~~l~~tv--~~yN~~~~~g 355 (466)
T PRK08274 312 GRFMPPVFPPIQADTLEELAE----------------------------------KLGLDPAAFLRTV--AAFNAAVRPG 355 (466)
T ss_pred hhcCcccCCccccCCHHHHHH----------------------------------HhCcCHHHHHHHH--HHHHHhcccc
Confidence 00000001 1112233332 2233222111111 0111
Q ss_pred --------------------HHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccc--cccCCCCeEEEEEEe-e-c
Q 011610 389 --------------------SIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVL-N-V 444 (481)
Q Consensus 389 --------------------~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~l-d-v 444 (481)
.+...+.+-||+.....+ ....|.||+.+++- .+++ +.++|||||+|||+. . +
T Consensus 356 ~~~~~~~d~~~~~~~~~~~~~~~~~i~~~Pfya~~~~p--~~~~t~GGl~~d~~-~~vl~~~g~~I~GLYAaGe~~gg~~ 432 (466)
T PRK08274 356 PFDPTVLDDCGTEGLTPPKSHWARPIDTPPFYAYPVRP--GITFTYLGLKVDED-ARVRFADGRPSPNLFAAGEMMAGNV 432 (466)
T ss_pred CCCcccccccccccCCCCcccccCccCCCCeEEEEecc--ceeeecccEEECCC-ceEECCCCCCCCCceeccccccccc
Confidence 122234566777665544 36789999999863 2333 467999999999985 3 6
Q ss_pred cc--CcchHHHHHHHHHHHHHHHHHhHHhhH
Q 011610 445 DG--VTGGFNFQNAWSGGYIAGTSIGKLSND 473 (481)
Q Consensus 445 ~g--~~GGynl~~A~~sG~~AG~~aa~~~~~ 473 (481)
+| +.||.+|.+|+++||+||++|++++..
T Consensus 433 ~g~~y~~g~~l~~~~~~G~iag~~aa~~~~~ 463 (466)
T PRK08274 433 LGKGYPAGVGLTIGAVFGRIAGEEAARHAQH 463 (466)
T ss_pred ccCCCccccchhhhhhhHHHHHHHHHHHhhh
Confidence 55 668899999999999999999988754
No 6
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.94 E-value=3.2e-24 Score=230.54 Aligned_cols=356 Identities=19% Similarity=0.240 Sum_probs=209.4
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CC-ceEEecCCceeeccCCCcc-hhHHh------hccCCCCh
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LS-KVKISGGGRCNVTNGHCAD-KMILA------GHYPRGHK 120 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~-k~~~sG~g~~n~~~~~~~~-~~~~~------~~~~~~~~ 120 (481)
++||+|||||+||++||++|++.++|.+|+||||... ++ +....|+..+..++....+ ..... ..+.. +.
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~-d~ 81 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLA-DQ 81 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCC-CH
Confidence 5799999999999999999998434689999998755 33 4445555566554432222 11111 11221 23
Q ss_pred hchhhHHhcCChHHHHHHHHhcCCcceeecCCee--------------eecCCChHHHHHHHHHHHHhCCCEEEcCceEE
Q 011610 121 EFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV--------------FPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVT 186 (481)
Q Consensus 121 ~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~--------------~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~ 186 (481)
.+++.+ .... .+.++|+.++|+++.....+.+ |+.+.....++..|.+.+++.||++++++.|+
T Consensus 82 ~~v~~l-~~~a-~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~ 159 (575)
T PRK05945 82 DAVAIL-TQEA-PDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVM 159 (575)
T ss_pred HHHHHH-HHHH-HHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEE
Confidence 333332 2222 3567889999998876443322 23333457888999999999999999999999
Q ss_pred EEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCc
Q 011610 187 TASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIAD 252 (481)
Q Consensus 187 ~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~ 252 (481)
+|..++ +...++...+..++....+.|+.||+|||+ +|+|+.++.++|.++..+.. +++...-
T Consensus 160 ~L~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~--~qf~pt~ 236 (575)
T PRK05945 160 RLILED-NQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEF--VQFHPTG 236 (575)
T ss_pred EEEEEC-CEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCCcc--eEEeeee
Confidence 998765 444555532211222346899999999995 46789999999999866542 2322110
Q ss_pred cccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccc-----cchhhcccchhhHHHhHccCc--------eeE
Q 011610 253 SQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGL-----SGPVILRLSAWGARYLFSSCY--------KGM 319 (481)
Q Consensus 253 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~gl-----sG~~il~lS~~~~~~~~~~~~--------~~~ 319 (481)
... .+.-+. ..+. ..+ ...++..|+.++.+|.- ....+ +++.+..++..... ...
T Consensus 237 -~~~--~~~l~~-~~~r--g~g----~~lvn~~G~RF~~~y~~~~~el~~rd~--v~~ai~~~~~~g~g~~~~~~~~~~~ 304 (575)
T PRK05945 237 -LYP--VGVLIS-EAVR--GEG----AYLINSEGDRFMADYAPSRMELAPRDI--TSRAITLEIRAGRGINPDGSAGGPF 304 (575)
T ss_pred -ecC--CCeEEe-eecc--cCc----eEEECCCCCCcccccCccccccCchhH--HHHHHHHHHHhcCCCCCcccCCCCE
Confidence 000 111100 0000 000 11223345555544421 11111 23333333322111 123
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeE
Q 011610 320 LTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTL 399 (481)
Q Consensus 320 ~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~ 399 (481)
+.+|+- .+..+.+. . .+| .+++.+.+..|+|+. ..++
T Consensus 305 v~ld~~-~~~~~~~~----~------------------~~~-~~~~~l~~~~gid~~-------------------~~~i 341 (575)
T PRK05945 305 VYLDLR-HMGKEKIM----S------------------RVP-FCWEEAHRLVGVDAV-------------------TEPM 341 (575)
T ss_pred EEEECC-CCCHHHHH----H------------------HhH-HHHHHHHHHhCcCCC-------------------CceE
Confidence 455542 22222111 1 011 133444555678763 2345
Q ss_pred EEcccCCCceeEEecCCCCCCCCCcccc--cccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610 400 EVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN 472 (481)
Q Consensus 400 ~v~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~ 472 (481)
+|... +..|.|||.+++ +.+++ ..+.|||||+|||+. .++| +.||..|.+|+++|++||++|+++++
T Consensus 342 ~v~p~-----~h~t~GGi~vd~-~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 414 (575)
T PRK05945 342 PVRPT-----VHYCMGGIPVNT-DGRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYVQ 414 (575)
T ss_pred Eeecc-----ceecCCCeeECC-CceeccCCCCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 55433 568999999874 23333 356899999999986 4676 67999999999999999999998763
No 7
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.94 E-value=4.1e-24 Score=231.22 Aligned_cols=188 Identities=21% Similarity=0.246 Sum_probs=127.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC--ceEEecCCceeeccCCCcc-hhHHhh------ccCCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS--KVKISGGGRCNVTNGHCAD-KMILAG------HYPRGH 119 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~--k~~~sG~g~~n~~~~~~~~-~~~~~~------~~~~~~ 119 (481)
.++||+|||+|+||++||+.|++ .|.+|+||||...++ +..+.|+..|++.+....+ +..... .+. .+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae--~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l-~d 83 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARE--RGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFL-NN 83 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHH--CCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccC-Cc
Confidence 46899999999999999999999 799999999875543 4555666677765432222 111211 111 12
Q ss_pred hhchhhHHhcCChHHHHHHHHhcCCcceeecCCee---------eec-----CCChHHHHHHHHHHHHhC--------C-
Q 011610 120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------FPV-----SDSSSSVIDCLLTEAKHR--------G- 176 (481)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------~p~-----~~~a~~~~~~l~~~~~~~--------G- 176 (481)
..+++. +.... .+.+.|+.++|+++....++.+ +|. ......+++.|.+.+++. |
T Consensus 84 ~~~v~~-~~~~s-~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~ 161 (626)
T PRK07803 84 WRMAEL-HAKEA-PDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGD 161 (626)
T ss_pred HHHHHH-HHHHh-HHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccC
Confidence 233322 22223 3555799999999875443322 332 223567888998888776 7
Q ss_pred ----CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCc
Q 011610 177 ----VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSI 238 (481)
Q Consensus 177 ----v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i 238 (481)
|++++++.|+++..++ +...++...+..++....+.|+.||+|||+ +|+|+.++.++|+.+
T Consensus 162 ~~~~v~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l 240 (626)
T PRK07803 162 YEARIKVFAECTITELLKDG-GRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGATL 240 (626)
T ss_pred CcCceEEEeCCEEEEEEEEC-CEEEEEEEEECCCCeEEEEEcCeEEECCCcccCCCCCcCCCCCcCcHHHHHHHHcCCcE
Confidence 9999999999998764 344455443211222347899999999995 578999999999998
Q ss_pred ccCC
Q 011610 239 VDPV 242 (481)
Q Consensus 239 ~~~~ 242 (481)
..+.
T Consensus 241 ~~me 244 (626)
T PRK07803 241 INME 244 (626)
T ss_pred eCCc
Confidence 7653
No 8
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.93 E-value=1.2e-23 Score=225.52 Aligned_cols=354 Identities=19% Similarity=0.204 Sum_probs=207.9
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCceEEecCCceeeccCCCcchhHHhhccC-----CCChhc
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNGHCADKMILAGHYP-----RGHKEF 122 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~-----~~~~~~ 122 (481)
.++||+|||+|+|||+||+.+++.++|.+|+|+||... +.+...+++|.|+..+.. .++..+..... ..+..+
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~-ds~e~~~~dt~~~g~~~~d~~l 80 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDD-DSLDEHFHDTVSGGDWLCEQDV 80 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCC-CCHHHHHHHHHHhcCCcCcHHH
Confidence 36899999999999999999998444789999998754 456667777777665432 12223332221 123334
Q ss_pred hhhHHhcCChHHHHHHHHhcCCcceeecCCee--------------eecCCChHHHHHHHHHHHHh-CCCEEEcCceEEE
Q 011610 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV--------------FPVSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTT 187 (481)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~--------------~p~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~ 187 (481)
++.+ .... .+.++|+.++|+++....+|.+ ++.......+++.|.+.+.+ .+++++.++.+++
T Consensus 81 v~~l-~~~s-~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~ 158 (580)
T TIGR01176 81 VEYF-VAEA-PKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTD 158 (580)
T ss_pred HHHH-HHHh-HHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEE
Confidence 4333 2223 4677899999999876443322 11112456788899888776 4899999999999
Q ss_pred EEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCcc
Q 011610 188 ASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADS 253 (481)
Q Consensus 188 i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~ 253 (481)
+..++ +...+|...+..++....+.|+.||+|||+ +|+++.++.++|..+..+.. +++....
T Consensus 159 Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~--~q~hPt~- 234 (580)
T TIGR01176 159 LLVDD-GRVCGLVAIEMAEGRLVTILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEF--VQYHPTG- 234 (580)
T ss_pred EEeeC-CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcccccCCCCCCCcCcHHHHHHHHcCCCccCCcc--eEEEccc-
Confidence 98765 455566543212233367999999999994 57899999999998865542 2322110
Q ss_pred ccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchh-----------hcc----cchhhHHHhHccCc--
Q 011610 254 QLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPV-----------ILR----LSAWGARYLFSSCY-- 316 (481)
Q Consensus 254 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~-----------il~----lS~~~~~~~~~~~~-- 316 (481)
... .+.-+. ..++ + .+...++..|+.+...|. .++. .|. +++.+..++.+.+.
T Consensus 235 -~~~-~~~l~~-e~~r----g--~g~~lvn~~G~RF~~~y~-~~~~~~~~~p~~~~~~l~~rd~v~~ai~~e~~~g~~~~ 304 (580)
T TIGR01176 235 -LPG-TGILMT-EGCR----G--EGGILVNKDGYRYLQDYG-MGPETPVGEPKNKYMELGPRDKVSQAFWHEHNKGNTID 304 (580)
T ss_pred -cCC-CceEEe-eccc----C--CceEEECCCCCCcccccc-cccccccccccchhhhcchhHHHHHHHHHHHHhcCCCC
Confidence 000 111000 0000 0 000122334555444442 1111 111 23333334333211
Q ss_pred ---eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHH
Q 011610 317 ---KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIAR 392 (481)
Q Consensus 317 ---~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~ 392 (481)
...+.+|+- .+..+.+.+.+ | .+..+++. .|+|+.+
T Consensus 305 ~~~g~~v~ld~~-~~~~~~~~~~~----------------------~--~~~~~~~~~~gid~~~--------------- 344 (580)
T TIGR01176 305 TPYGDVVYLDLR-HLGEDLLDERL----------------------P--FICELAKAYVHVDPVK--------------- 344 (580)
T ss_pred CCCCCEEEEEcC-CCCHHHHHHHh----------------------h--HHHHHHHHHcCCCCCC---------------
Confidence 113455542 23333332111 0 01122333 4666532
Q ss_pred HhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHh
Q 011610 393 LLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIG 468 (481)
Q Consensus 393 ~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa 468 (481)
-+++|... +..|.|||.+|+- . .+.|||||+|||+. .++| +.||.+|.+|+.+|++||++|+
T Consensus 345 ----~~i~v~p~-----~h~~~GGi~~d~~----~-~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa 410 (580)
T TIGR01176 345 ----EPIPVRPT-----VHYTMGGIETDIN----C-ETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAA 410 (580)
T ss_pred ----CeEEEehH-----HhccCCCeeECcC----c-ccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHH
Confidence 24555444 4578999987642 2 26899999999986 4676 5689999999999999999999
Q ss_pred HHhhH
Q 011610 469 KLSND 473 (481)
Q Consensus 469 ~~~~~ 473 (481)
+++.+
T Consensus 411 ~~~~~ 415 (580)
T TIGR01176 411 ERAAR 415 (580)
T ss_pred Hhhcc
Confidence 88643
No 9
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.93 E-value=1.7e-24 Score=229.30 Aligned_cols=379 Identities=18% Similarity=0.188 Sum_probs=206.2
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCC-ceEEecCCceeeccCC-------CcchhHHhhcc-
Q 011610 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLS-KVKISGGGRCNVTNGH-------CADKMILAGHY- 115 (481)
Q Consensus 46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~-k~~~sG~g~~n~~~~~-------~~~~~~~~~~~- 115 (481)
.++.++||||||+|.+|++||+.+++ .|.+|+||||.. .|+ +...+|+. +..+.. ..+...+...+
T Consensus 57 ~~~~~~DVvVVG~G~AGl~AAi~Aa~--~Ga~VivlEK~~~~GG~s~~s~Gg~--~~~~~~~~~~~g~~d~~~~~~~~~~ 132 (506)
T PRK06481 57 ELKDKYDIVIVGAGGAGMSAAIEAKD--AGMNPVILEKMPVAGGNTMKASSGM--NASETKFQKAQGIADSNDKFYEETL 132 (506)
T ss_pred cccccCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCcccccCCcc--ccCChHHHHhcCCCCCHHHHHHHHH
Confidence 34467999999999999999999999 799999999764 443 33333322 222211 00111222221
Q ss_pred ----CCCChhchhhHHhcCChHHHHHHHHhcCCcceee--cCC----e-eeecC--CChHHHHHHHHHHHHhCCCEEEcC
Q 011610 116 ----PRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTE--DDG----R-VFPVS--DSSSSVIDCLLTEAKHRGVVLQTG 182 (481)
Q Consensus 116 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~--~~g----~-~~p~~--~~a~~~~~~l~~~~~~~Gv~i~~~ 182 (481)
...++.+++.+.. ...+.++|++++|+++... ..+ + .+|.. .....+++.|.+.+++.|++++++
T Consensus 133 ~~~~~~~d~~l~~~~~~--~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~ 210 (506)
T PRK06481 133 KGGGGTNDKALLRYFVD--NSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVN 210 (506)
T ss_pred HhcCCCCCHHHHHHHHh--ccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeC
Confidence 1122333333222 2346789999999876531 111 1 22322 123568889999999999999999
Q ss_pred ceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------------------ChhHHHHHHHcCC
Q 011610 183 KVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------------------SQQGHRLAAQLGH 236 (481)
Q Consensus 183 ~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------------------~g~g~~la~~~G~ 236 (481)
++|++|..++ +....|.+.. ..+....+.|+.||+|+|+ +|+|+.|+.++|.
T Consensus 211 t~v~~l~~~~-g~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n~~m~~~~~p~~~~~~~~~~~g~tGdGi~ma~~aGA 288 (506)
T PRK06481 211 ADVTKITEKD-GKVTGVKVKI-NGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTTNQEGSTGDGIKMIEKLGG 288 (506)
T ss_pred CeeEEEEecC-CEEEEEEEEe-CCCeEEEEecCeEEEeCCCcccCHHHHHHhCccccCCccCCCCCCChHHHHHHHHcCC
Confidence 9999998754 3444565542 1112357999999999994 3678999999999
Q ss_pred CcccCCCce-eEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccC
Q 011610 237 SIVDPVPSL-FTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSC 315 (481)
Q Consensus 237 ~i~~~~p~l-~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~ 315 (481)
.+..+.... .+....+........++-. ..+-+..+| +++.. |.. + .. .+++.+. ...+
T Consensus 289 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~i~Vn~~G----~RF~n---E~~-~------~~--~~~~~~~---~~~~ 348 (506)
T PRK06481 289 TTVDMDQIQIHPTVQQSKSYLIGEAVRGE-GAILVNQKG----KRFGN---ELD-T------RD--KVSAAIN---KLPE 348 (506)
T ss_pred CccCchhhhhCCCccCCCcceehhhccCC-ceEEECCCC----CCCCC---CCc-c------HH--HHHHHHH---hCcC
Confidence 875432111 0000000000000011101 112222222 22222 211 0 00 0111111 0111
Q ss_pred ceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHH--
Q 011610 316 YKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARL-- 393 (481)
Q Consensus 316 ~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-- 393 (481)
....+.+|- . ..+... ... .+...+.......+++|++..+++++...+.+ +.+++.+..
T Consensus 349 ~~~~~i~D~------~-~~~~~~-~~~--------~~~~~g~~~kadTleeLA~~~gid~~~L~~tv--~~yN~~~~~g~ 410 (506)
T PRK06481 349 KYAYVVFDS------G-VKDRVK-AIA--------QYEEKGFVEEGKTIDELAKKINVPAETLTKTL--DTWNKAVKNKK 410 (506)
T ss_pred CcEEEEECH------H-HHhhhh-hhH--------HHHhCCcEEEcCCHHHHHHHhCCCHHHHHHHH--HHHHHHHhcCC
Confidence 122333331 1 100000 000 00000002223445667777777766544433 334444322
Q ss_pred -------------hccCeEEEcccCCCceeEEecCCCCCCCCCc-ccccccCCCCeEEEEEEe-eccc--CcchHHHHHH
Q 011610 394 -------------LKHCTLEVAGKGQFKDEFVTAGGVPLSEISL-NTMESKIHPRLFFAGEVL-NVDG--VTGGFNFQNA 456 (481)
Q Consensus 394 -------------l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~-~t~esk~~~gLy~~GE~l-dv~g--~~GGynl~~A 456 (481)
+.+-||+.....+. ...|.||+.+++--. ..-+.++|||||+|||+. .++| +.||.++.+|
T Consensus 411 D~~fgr~~~~~~~i~~~PfYai~~~p~--~~~T~GGl~in~~~qVld~~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~ 488 (506)
T PRK06481 411 DEAFGRTTGMDNDLSTGPYYAIKIAPG--IHYTMGGVKINTNTEVLKKDGSPITGLYAAGEVTGGLHGENRIGGNSVADI 488 (506)
T ss_pred CcccCCCCCCCCCCcCCCEEEEEEecc--eeecccCeEECCCceEEcCCCCEeCCeeeceeccccCCCCCCCchhhHHHH
Confidence 33455555444332 678999999885321 122468999999999975 4554 6689999999
Q ss_pred HHHHHHHHHHHhHHhh
Q 011610 457 WSGGYIAGTSIGKLSN 472 (481)
Q Consensus 457 ~~sG~~AG~~aa~~~~ 472 (481)
+.+||+||++||++++
T Consensus 489 ~~~GriAg~~aa~~~~ 504 (506)
T PRK06481 489 IIFGRQAGTQSAEFAK 504 (506)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999998864
No 10
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.93 E-value=2e-23 Score=225.40 Aligned_cols=358 Identities=15% Similarity=0.156 Sum_probs=204.6
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC-ceEEecCCceeeccC-CCcchhHHhhcc-----CCCC
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCNVTNG-HCADKMILAGHY-----PRGH 119 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~-k~~~sG~g~~n~~~~-~~~~~~~~~~~~-----~~~~ 119 (481)
...++||+|||+|.||++||+++++ .|++|+||||..+.+ ....+++|-+..... ...++..+.... ...+
T Consensus 47 ~~~~~DVlVIG~G~AGl~AAl~Aae--~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d 124 (635)
T PLN00128 47 VDHTYDAVVVGAGGAGLRAAIGLSE--HGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGD 124 (635)
T ss_pred eeeecCEEEECccHHHHHHHHHHHh--cCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCC
Confidence 4457899999999999999999999 789999999875543 323333333221111 111121211111 1123
Q ss_pred hhchhhHHhcCChHHHHHHHHhcCCcceeecCCeee----------------------ecCCChHHHHHHHHHHHHhCCC
Q 011610 120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVF----------------------PVSDSSSSVIDCLLTEAKHRGV 177 (481)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~----------------------p~~~~a~~~~~~l~~~~~~~Gv 177 (481)
+.+++.+.. ...+.++|+.++|+++....+|.++ ........++..|.+.+.+.||
T Consensus 125 ~~lv~~l~~--~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv 202 (635)
T PLN00128 125 QDAIQYMCR--EAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNT 202 (635)
T ss_pred HHHHHHHHH--hHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCC
Confidence 444444322 2346788999999988654333211 0112356788999998988999
Q ss_pred EEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCC
Q 011610 178 VLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVP 243 (481)
Q Consensus 178 ~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p 243 (481)
+|+.++.+++|..++++...+|...+..++....+.|+.||+|||+ +|+|+.+|.++|..+..+.
T Consensus 203 ~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~tt~~~~~tGDG~~mA~~aGA~l~~me- 281 (635)
T PLN00128 203 QFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLE- 281 (635)
T ss_pred EEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccccccccCCCCCCCHHHHHHHHcCCCCcCCc-
Confidence 9999999999887631345566653312233457899999999994 5789999999999986543
Q ss_pred ceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcc------cchhhHHHhHccCc-
Q 011610 244 SLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILR------LSAWGARYLFSSCY- 316 (481)
Q Consensus 244 ~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~------lS~~~~~~~~~~~~- 316 (481)
++++....-. . .+.-+. ..++ ..+ ..++...|+.++.+|+ |.... +++.+..++.+...
T Consensus 282 -fvqfhPt~~~--~-~~~l~~-ea~r--g~g----~~lvN~~GeRF~~~y~---~~~~el~~rd~v~~ai~~e~~~~~g~ 347 (635)
T PLN00128 282 -FVQFHPTGIY--G-AGCLIT-EGSR--GEG----GILRNSEGERFMERYA---PTAKDLASRDVVSRSMTMEIREGRGV 347 (635)
T ss_pred -ceEEeccccc--C-CCeEEe-eecc--CCC----cEEECCCCCCcccccC---cccccccchhHHHHHHHHHHHhcCCC
Confidence 3333221000 0 111110 0000 000 1122334555444432 11001 23333333322211
Q ss_pred ---eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHH
Q 011610 317 ---KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARL 393 (481)
Q Consensus 317 ---~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 393 (481)
...+.+|+- .++.+.|.+.+.. +.+......|+|+.
T Consensus 348 ~~~~~~v~ld~~-~l~~e~l~~~~~~-----------------------~~~~~~~~~G~D~~----------------- 386 (635)
T PLN00128 348 GPEKDHIYLHLN-HLPPEVLKERLPG-----------------------ISETAAIFAGVDVT----------------- 386 (635)
T ss_pred CCCCCEEEEEcC-CCCHHHHHHHHHH-----------------------HHHHHHHHcCCCCC-----------------
Confidence 112445542 3444444322211 11111111456532
Q ss_pred hccCeEEEcccCCCceeEEecCCCCCCCCCcccc------cccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHH
Q 011610 394 LKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM------ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIA 463 (481)
Q Consensus 394 l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~------esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~A 463 (481)
+-|++|... +..|+|||.+++ +-.+. ..+.|||||+|||+. .++| +.||..|.+|+.+|++|
T Consensus 387 --~~pi~v~P~-----~hyt~GGi~vd~-~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~A 458 (635)
T PLN00128 387 --KEPIPVLPT-----VHYNMGGIPTNY-HGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRAC 458 (635)
T ss_pred --CCceEeecc-----ceEecCCcccCC-CCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHH
Confidence 224555544 568999998874 22222 126799999999986 5787 67999999999999999
Q ss_pred HHHHhHHhh
Q 011610 464 GTSIGKLSN 472 (481)
Q Consensus 464 G~~aa~~~~ 472 (481)
|++|++++.
T Consensus 459 g~~aa~~~~ 467 (635)
T PLN00128 459 ANRVAEIAK 467 (635)
T ss_pred HHHHHHhhc
Confidence 999987653
No 11
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.93 E-value=1e-23 Score=226.54 Aligned_cols=354 Identities=18% Similarity=0.199 Sum_probs=204.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCceEEecCCceeeccCCCcchhHHhhccC-----CCChhc
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNGHCADKMILAGHYP-----RGHKEF 122 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~-----~~~~~~ 122 (481)
.++||+|||+|.|||+||+.+++.+++.+|+||||... +....++++|.+...... .++..+..... ..+..+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~-ds~e~~~~d~~~~g~~~~d~~~ 81 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDH-DSFDYHFHDTVAGGDWLCEQDV 81 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCC-CCHHHHHHHHHHhcccCCCHHH
Confidence 56899999999999999999998444689999998744 445556666665544321 12222222211 112333
Q ss_pred hhhHHhcCChHHHHHHHHhcCCcceeecCCee-------------ee-cCCChHHHHHHHHHHHHhC-CCEEEcCceEEE
Q 011610 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV-------------FP-VSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTT 187 (481)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~-------------~p-~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~ 187 (481)
++.+. . ...+.++|+.++|+++....++.+ +. .......+...|.+.+.+. +++++.++.+++
T Consensus 82 v~~~~-~-~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~ 159 (582)
T PRK09231 82 VEYFV-H-HCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLD 159 (582)
T ss_pred HHHHH-H-HHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEE
Confidence 33322 2 234677899999999865433321 11 1123457888888877764 899999999999
Q ss_pred EEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCcc
Q 011610 188 ASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADS 253 (481)
Q Consensus 188 i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~ 253 (481)
+..++ +...+|...+..++....+.|+.||+|||+ +|+|+.+|.++|..+..+.. +++...
T Consensus 160 Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~~~~t~~~~~tGdG~~mA~~aGA~l~~me~--~q~~Pt-- 234 (582)
T PRK09231 160 ILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEF--VQYHPT-- 234 (582)
T ss_pred EEEeC-CEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCccc--eeeecc--
Confidence 98765 444455542211222357999999999994 57889999999998865432 332211
Q ss_pred ccccccCceeccEEEEEEecCccCCCCccceecCeEEEecccc------chh--hcc------cchhhHHHhHccCc---
Q 011610 254 QLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLS------GPV--ILR------LSAWGARYLFSSCY--- 316 (481)
Q Consensus 254 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~gls------G~~--il~------lS~~~~~~~~~~~~--- 316 (481)
.. .-.+.-+. ..++ ..+ ...++..|+.+...|++. .|- .+. +++.+..++.+...
T Consensus 235 ~~-~~~~~l~~-e~~r--g~g----~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~el~~rd~v~~ai~~~~~~g~~~~~ 306 (582)
T PRK09231 235 GL-PGSGILMT-EGCR--GEG----GILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTIST 306 (582)
T ss_pred ee-CCCCceee-eccc--CCC----eEEECCCCCCchhccccccccccccccccccccccHHHHHHHHHHHHHhCCCccC
Confidence 00 00111110 0000 000 112233455544444321 010 011 22222223222110
Q ss_pred --eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHH
Q 011610 317 --KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARL 393 (481)
Q Consensus 317 --~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~ 393 (481)
...+.+|+ ..+..+.+.+.+ | .+..+++. .|+|+.+
T Consensus 307 ~~g~~v~ld~-~~~~~~~~~~~~----------------------~--~i~e~~~~~~G~d~~~---------------- 345 (582)
T PRK09231 307 PRGDVVYLDL-RHLGEKKLHERL----------------------P--FICELAKAYVGVDPVK---------------- 345 (582)
T ss_pred CCCCEEEEEC-CcCCHHHHHHHh----------------------h--HHHHHHHHHcCCCCCC----------------
Confidence 11355664 233333222111 1 12334444 5777642
Q ss_pred hccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhH
Q 011610 394 LKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGK 469 (481)
Q Consensus 394 l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~ 469 (481)
-++++... +..|.|||.+|+- ++ +.|||||+|||+. .++| +.||..|.+|+++|++||++|++
T Consensus 346 ---~~i~v~p~-----~h~t~GGi~vd~~----~~-t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 412 (582)
T PRK09231 346 ---EPIPVRPT-----AHYTMGGIETDQN----CE-TRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAE 412 (582)
T ss_pred ---Ceeeeece-----eeeeCCCEEECCC----Cc-cccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 13444333 6689999988742 22 7899999999986 4666 67999999999999999999998
Q ss_pred Hhh
Q 011610 470 LSN 472 (481)
Q Consensus 470 ~~~ 472 (481)
+++
T Consensus 413 ~~~ 415 (582)
T PRK09231 413 RAA 415 (582)
T ss_pred hhh
Confidence 864
No 12
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.93 E-value=2.2e-23 Score=225.05 Aligned_cols=359 Identities=17% Similarity=0.166 Sum_probs=206.5
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCcee-eccCCCcchhHHhhc-----cCCCC
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCN-VTNGHCADKMILAGH-----YPRGH 119 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n-~~~~~~~~~~~~~~~-----~~~~~ 119 (481)
...++||+|||+|.|||+||+.+++ .|.+|+||||.... .....+++|-.. ..+....++...... -...+
T Consensus 26 ~~~~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d 103 (617)
T PTZ00139 26 IDHTYDAVVVGAGGAGLRAALGLVE--LGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGD 103 (617)
T ss_pred cccccCEEEECccHHHHHHHHHHHH--cCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCC
Confidence 3357899999999999999999999 79999999987554 333333333322 121111111111111 11123
Q ss_pred hhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeee----------------------cCCChHHHHHHHHHHHHhCCC
Q 011610 120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP----------------------VSDSSSSVIDCLLTEAKHRGV 177 (481)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p----------------------~~~~a~~~~~~l~~~~~~~Gv 177 (481)
+.+++.+.. ...+.++|+.++|+++....+|.++. .......++..|.+.+++.||
T Consensus 104 ~~lv~~l~~--~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv 181 (617)
T PTZ00139 104 QDAIQYMCR--EAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDC 181 (617)
T ss_pred HHHHHHHHH--HHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCC
Confidence 344443322 23577899999999986543332221 011345788999999999999
Q ss_pred EEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCC
Q 011610 178 VLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVP 243 (481)
Q Consensus 178 ~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p 243 (481)
+++.++.+++|..++++...+|...+..++....+.|+.||+|||+ +|+++.++.++|..+..+.
T Consensus 182 ~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me- 260 (617)
T PTZ00139 182 NFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLPLQDLE- 260 (617)
T ss_pred EEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccccCCcCCCCCcccHHHHHHHHcCCCccCCc-
Confidence 9999999999987321345566653212233457899999999985 4788999999999986543
Q ss_pred ceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCc--
Q 011610 244 SLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY-- 316 (481)
Q Consensus 244 ~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~-- 316 (481)
++++.... ... .+.-+. ..++ ..+ ...+...|+.++.+|. +....+ +++.+..++.+...
T Consensus 261 -f~q~~pt~-~~~--~~~l~~-e~~r--g~g----~~lvN~~GeRF~~~y~~~~~el~~rd~--v~~ai~~e~~~g~g~~ 327 (617)
T PTZ00139 261 -FVQFHPTG-IYG--AGCLIT-EGCR--GEG----GILRNSEGERFMERYAPTAKDLASRDV--VSRAMTIEILEGRGCG 327 (617)
T ss_pred -eEEecccc-ccC--CCcEEE-eecc--CCC----cEEECCCCCCcccccCccccccccchH--HHHHHHHHHHhcCCCC
Confidence 23322110 000 111110 0000 000 1123344555544442 111111 23333333332211
Q ss_pred --eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHh
Q 011610 317 --KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLL 394 (481)
Q Consensus 317 --~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l 394 (481)
...+.+|+- .++.+.|++.+.. +.+......|+|+.+
T Consensus 328 ~~~~~v~lD~~-~~~~~~l~~~~~~-----------------------~~~~~~~~~G~D~~~----------------- 366 (617)
T PTZ00139 328 PNKDHIYLDLT-HLPPETLHERLPG-----------------------ISETAKIFAGVDVTK----------------- 366 (617)
T ss_pred CCCCEEEEECC-CCCHHHHHHHHHH-----------------------HHHHHHHHcCCCCCC-----------------
Confidence 123556653 3444444333311 001111114666532
Q ss_pred ccCeEEEcccCCCceeEEecCCCCCCCCCcccc------cccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHH
Q 011610 395 KHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM------ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAG 464 (481)
Q Consensus 395 ~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~------esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG 464 (481)
-+++|... +..|+|||.+++- ..+. ..+.|||||+|||+. .++| +.||..|.+|+.+|++||
T Consensus 367 --~~i~v~p~-----~h~t~GGi~vd~~-~~v~d~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag 438 (617)
T PTZ00139 367 --EPIPVLPT-----VHYNMGGIPTNWK-TQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAA 438 (617)
T ss_pred --CCeEEecc-----cceecCCeEEcCC-ceeeccccccCCCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHH
Confidence 13445433 5679999998753 2333 235799999999986 4676 779999999999999999
Q ss_pred HHHhHHhh
Q 011610 465 TSIGKLSN 472 (481)
Q Consensus 465 ~~aa~~~~ 472 (481)
++|++++.
T Consensus 439 ~~aa~~~~ 446 (617)
T PTZ00139 439 NTVMEILK 446 (617)
T ss_pred HHHHHhhc
Confidence 99998753
No 13
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.93 E-value=4.1e-23 Score=222.18 Aligned_cols=351 Identities=20% Similarity=0.238 Sum_probs=200.4
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-C-ceEEecCCceeeccCCCcch-hHHhh------ccCCCChhc
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-S-KVKISGGGRCNVTNGHCADK-MILAG------HYPRGHKEF 122 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~-k~~~sG~g~~n~~~~~~~~~-~~~~~------~~~~~~~~~ 122 (481)
||+|||+|+||++||+.|++ .|.+|+||||.... . +....|+..+...+....+. ..+.. .+. .+..+
T Consensus 1 DVlVVG~G~AGl~AA~~aae--~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~-~d~~~ 77 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAK--AGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYL-ADQDA 77 (566)
T ss_pred CEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCC-CCHHH
Confidence 89999999999999999999 79999999987543 2 33344444555443221121 11111 111 23334
Q ss_pred hhhHHhcCChHHHHHHHHhcCCcceeecCCee--------------eecCCChHHHHHHHHHHHHhCCCEEEcCceEEEE
Q 011610 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV--------------FPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTA 188 (481)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~--------------~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i 188 (481)
++.+.. ...+.++|+.++|+++.....+.+ |+.+.....+...|.+.+++.|+++++++.|++|
T Consensus 78 v~~~~~--~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L 155 (566)
T TIGR01812 78 VEYMCQ--EAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDL 155 (566)
T ss_pred HHHHHH--HHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEE
Confidence 333322 234778899999998865433322 2222245578888999898899999999999999
Q ss_pred EecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCccc
Q 011610 189 SSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQ 254 (481)
Q Consensus 189 ~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~ 254 (481)
..++ +...+|...+..++....+.|+.||+|||+ +|+++.++.++|..+..+... ++... ..
T Consensus 156 ~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~~~~~~~~~tGdGi~ma~~aGa~l~~~e~~--q~~p~-~~ 231 (566)
T TIGR01812 156 IHDD-GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEFV--QFHPT-GL 231 (566)
T ss_pred EEeC-CEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCCCCCCCCCcccHHHHHHHHcCCCccCCcce--EEeee-ee
Confidence 8765 444566543211222347899999999995 477899999999998665432 22211 00
Q ss_pred cccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCc-----eeEEEEec
Q 011610 255 LTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY-----KGMLTVDF 324 (481)
Q Consensus 255 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~-----~~~~~~d~ 324 (481)
.. .+.-+. ..++ ..+ ...+...|+.++..|. +....+ +++.+..++.+... ...+.+|+
T Consensus 232 ~~--~~~~~~-e~~~--~~g----~~lvn~~G~RF~~~~~~~~~e~~~r~~--~~~ai~~~~~~~~g~~~~~~~~v~~d~ 300 (566)
T TIGR01812 232 YP--SGILIT-EGCR--GEG----GYLVNKNGERFMERYAPEKMELAPRDV--VSRAMWTEIREGRGVGSPPGDYVYLDL 300 (566)
T ss_pred CC--CCcEEe-cccc--CCc----eEEECCCCCCCCcccCccccccCchhH--HHHHHHHHHHhcCCCCCCCCCEEEEEC
Confidence 00 111000 0000 000 0112223444333331 111111 23333333322211 12355554
Q ss_pred CCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHHhccCeEEEcc
Q 011610 325 VPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARLLKHCTLEVAG 403 (481)
Q Consensus 325 ~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~ 403 (481)
- .+..+.+.+. ++ .+..++.. .|+|+.+ -++++..
T Consensus 301 ~-~~~~~~~~~~----------------~~--------~~~~~~~~~~g~d~~~-------------------~~i~v~p 336 (566)
T TIGR01812 301 R-HLGEEKIEER----------------LP--------QIRELAKYFAGVDPVK-------------------EPIPVRP 336 (566)
T ss_pred C-CCCHHHHHHH----------------ch--------HHHHHHHHHcCCCCCC-------------------Cceeeeh
Confidence 2 2222222111 00 12234444 5776542 1244433
Q ss_pred cCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610 404 KGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN 472 (481)
Q Consensus 404 ~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~ 472 (481)
. +..|.|||.+++-- +-+..+.|||||+|||+. .++| +.||..|.+|+++|++||++|++++.
T Consensus 337 ~-----~h~t~GGi~id~~~-~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 337 T-----AHYSMGGIPTDYTG-RVICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred h-----hcccCCCeEECcCc-ccccCcccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 3 56799999887422 111127899999999986 4666 57999999999999999999998764
No 14
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.93 E-value=3.3e-23 Score=221.51 Aligned_cols=352 Identities=19% Similarity=0.184 Sum_probs=198.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC--CCceEEecCCceeeccCCCcchhHHhhcc-----CCCChh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP--LSKVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKE 121 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~--g~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~ 121 (481)
.++||+|||+|.||++||+.+ + .|.+|+||||... ++....++++- +.......+...++..+ ...+..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~--~G~~VilleK~~~~~gG~s~~a~gg~-~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 81 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-E--RGKNVVIVSKGLFGKSGCTVMAEGGY-NAVLNPEDSFEKHFEDTMKGGAYLNDPK 81 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-h--cCCCEEEEEccCCCCCccccccCceE-EEeCCCCCCHHHHHHHHHHHhcCCCCHH
Confidence 468999999999999999999 7 6899999998754 33233333322 22211111222222111 112334
Q ss_pred chhhHHhcCChHHHHHHHHhcCCcceeecC---------Ceeeec-----CCChHHHHHHHHHHHHhCCCEEEcCceEEE
Q 011610 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDD---------GRVFPV-----SDSSSSVIDCLLTEAKHRGVVLQTGKVVTT 187 (481)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~---------g~~~p~-----~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~ 187 (481)
+++.+... ..+.++|+.++|+++....+ +..+|. ......+...|.+.+++.||++++++.|++
T Consensus 82 lv~~~~~~--s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~ 159 (543)
T PRK06263 82 LVEILVKE--APKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIK 159 (543)
T ss_pred HHHHHHHH--HHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeee
Confidence 44443222 34677899999998864332 222332 123567888999989889999999999999
Q ss_pred EEecCCCC-eEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCc
Q 011610 188 ASSDNAGR-KFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIAD 252 (481)
Q Consensus 188 i~~~~~~~-~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~ 252 (481)
+..++ ++ ..+|...+..++....+.|+.||+|||+ +|+|+.++.++|..+..+.. +++....
T Consensus 160 Li~~~-~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~me~--~q~~p~~ 236 (543)
T PRK06263 160 LIVDE-NREVIGAIFLDLRNGEIFPIYAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEM--VQFHPTG 236 (543)
T ss_pred eEEeC-CcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCcCccc--eeEecce
Confidence 98765 44 5566543211222357999999999995 57899999999999865542 2221100
Q ss_pred c-ccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCce--eEEEEec
Q 011610 253 S-QLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCYK--GMLTVDF 324 (481)
Q Consensus 253 ~-~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~~--~~~~~d~ 324 (481)
. ....-.|..+. ..+. ..+ ...+...|+.++..|. ++...+ +++.+.+++...... ..+.+|+
T Consensus 237 ~~~~~~~~~~~~~-~~~~--~~g----~~lvn~~G~RF~~~y~~~~~e~~~~~~--~~~ai~~~~~~g~g~~~~~~~ld~ 307 (543)
T PRK06263 237 MVYPYSGRGILVT-EAVR--GEG----GILYNKNGERFMKRYDPERMELSTRDV--VARAIYTEIQEGRGTNHGGVYLDV 307 (543)
T ss_pred eccCCCCCceEEe-eeec--CCc----cEEECCCCCCcccccCcccccccchhH--HHHHHHHHHHhcCCCCCceEEEEC
Confidence 0 00001111110 0000 000 0122334444443221 111111 233333333222111 1244443
Q ss_pred CCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEccc
Q 011610 325 VPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGK 404 (481)
Q Consensus 325 ~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~ 404 (481)
- .++.+.+++.+. +++..+++ .|+|+. +-|+++...
T Consensus 308 ~-~~~~~~l~~~~~-----------------------~~~~~~~~-~G~D~~-------------------~~pi~v~p~ 343 (543)
T PRK06263 308 T-HLPDEVIEEKLE-----------------------TMLEQFLD-VGVDIR-------------------KEPMEVAPT 343 (543)
T ss_pred C-CCCHHHHHHHHH-----------------------HHHHHHHH-hCCCCC-------------------CCCEEEecc
Confidence 2 223333322221 11122221 355532 233555443
Q ss_pred CCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe-eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610 405 GQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN 472 (481)
Q Consensus 405 ~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l-dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~ 472 (481)
+..|.|||.+|+- ++ ++|||||+|||+. .++| +.||.+|.+|+++|++||++||+++.
T Consensus 344 -----~~~t~GGi~vd~~----~~-t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~ 404 (543)
T PRK06263 344 -----AHHFMGGIRINED----CE-TNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAE 404 (543)
T ss_pred -----ccEecCCEEECCC----Cc-ccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhh
Confidence 6689999987643 33 6899999999975 5665 67899999999999999999998764
No 15
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.93 E-value=5.1e-23 Score=220.53 Aligned_cols=352 Identities=18% Similarity=0.198 Sum_probs=204.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCceEEecCCceeecc--CCCcc-hhHHhh------ccCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTN--GHCAD-KMILAG------HYPRG 118 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~~~--~~~~~-~~~~~~------~~~~~ 118 (481)
.++||+|||+|.||++||+.+++ .|.+|+||||... +.....+++|.+.... ....+ ...+.. .+. .
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae--~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~-~ 80 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIAS--AGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYL-V 80 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHH--CCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccC-C
Confidence 56899999999999999999999 7999999998744 3344444444442221 11111 111111 111 2
Q ss_pred ChhchhhHHhcCChHHHHHHHHhcCCcceeecCCee---------eec-----CCChHHHHHHHHHHHHhCCCEEEcCce
Q 011610 119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------FPV-----SDSSSSVIDCLLTEAKHRGVVLQTGKV 184 (481)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------~p~-----~~~a~~~~~~l~~~~~~~Gv~i~~~~~ 184 (481)
+..+++.+.. ...+.++|+.++|+++....++.+ +|. ......++..|.+.+.+.||++++++.
T Consensus 81 d~~~v~~~~~--~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~ 158 (566)
T PRK06452 81 DQDAAELLSN--KSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWF 158 (566)
T ss_pred CHHHHHHHHH--HHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcE
Confidence 3334333322 235678899999998865433311 211 123567888898888888999999999
Q ss_pred EEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeee
Q 011610 185 VTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKI 250 (481)
Q Consensus 185 V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~ 250 (481)
++++..++ +...+|...+...+....+.|+.||+|||+ +|+|..+|.++|..+..+. .+++..
T Consensus 159 ~~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l~~~~~~~~~~tGDGi~mA~~aGA~l~~me--~~q~~p 235 (566)
T PRK06452 159 SLDLVTDN-KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPE--FVQFHP 235 (566)
T ss_pred EEEEEEEC-CEEEEEEEEECCCCeEEEEEeCeEEECCCccccccCCCCCCCCcChHHHHHHHHcCCcccCCc--ceEEee
Confidence 99999865 455677665322222357899999999994 5789999999999986543 233221
Q ss_pred CccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCc--eeEEEEe
Q 011610 251 ADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY--KGMLTVD 323 (481)
Q Consensus 251 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~--~~~~~~d 323 (481)
.. ... .+.-+. ..+. ..+ ...+...|+.++.+|. +....+ +++.+..++.+.+. ...+.+|
T Consensus 236 t~--~~~-~~~l~~-e~~r--g~g----~ilvN~~G~RF~~e~~~~~~~l~~rd~--v~~ai~~e~~~g~g~~~~~v~lD 303 (566)
T PRK06452 236 TA--LYP-SDVLIS-EAAR--GEG----GILKNVKGERFMTKYAPKKLDLAPRDI--VSRAIITEIREGRGFPGGYVGLD 303 (566)
T ss_pred eE--ECC-CCeEEE-Eeee--cCC----CEEECCCCCCCccccCccccccCCccH--HHHHHHHHHHhCCCCCCCeEEEE
Confidence 10 000 111000 0000 000 1122334555444432 111111 34444444433211 1346667
Q ss_pred cCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcc
Q 011610 324 FVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAG 403 (481)
Q Consensus 324 ~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~ 403 (481)
.-+. ..+.+.+. +|. .++.+.+..|+|+.+ + +++|..
T Consensus 304 ~~~~-~~~~~~~~----------------------~~~-~~~~~~~~~g~D~~~------------------~-~i~v~p 340 (566)
T PRK06452 304 LTHL-GEEYIKER----------------------LAL-AVEAAKSFAGVDAFT------------------E-PIPVRP 340 (566)
T ss_pred cccC-CHHHHHHH----------------------HHH-HHHHHHHhcCCCCCC------------------C-Ceeeec
Confidence 6432 22222211 111 112222225676532 1 244433
Q ss_pred cCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610 404 KGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN 472 (481)
Q Consensus 404 ~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~ 472 (481)
. +..|+|||.+|+- .+...|||||+|||+. .++| ++||..|..|+++|++||++|++++.
T Consensus 341 ~-----~h~~~GGi~vd~~----~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 341 A-----QHYYMGGIDVDID----GRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred c-----cCEecCCeEECCC----CCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3 5689999987642 2322499999999986 4777 77999999999999999999998764
No 16
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.93 E-value=1.2e-22 Score=218.72 Aligned_cols=355 Identities=20% Similarity=0.238 Sum_probs=203.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCC---CcEEEEeCCCC-CCceEEecCCceeeccCCCcc-hhHHhhcc-----CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPK---LNVVIIEKGKP-LSKVKISGGGRCNVTNGHCAD-KMILAGHY-----PRG 118 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g---~~V~llE~~~~-g~k~~~sG~g~~n~~~~~~~~-~~~~~~~~-----~~~ 118 (481)
.++||+|||+|+|||+||+.+++ .| .+|+||||... +....++++|.+...+....+ +....... ...
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~--~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~ 81 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAE--RSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLA 81 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHH--hCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccC
Confidence 46899999999999999999999 56 89999998755 445566666666544321111 11111111 112
Q ss_pred ChhchhhHHhcCChHHHHHHHHhcCCcceeecCCee---------eecC-----CChHHHHHHHHHHHHh-CCCEEEcCc
Q 011610 119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------FPVS-----DSSSSVIDCLLTEAKH-RGVVLQTGK 183 (481)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------~p~~-----~~a~~~~~~l~~~~~~-~Gv~i~~~~ 183 (481)
++.+++.+. ... .+.++|+.++|+++....+|++ +|.. .....+++.|.+.+.+ .||+++.++
T Consensus 82 d~~lv~~~~-~~s-~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~ 159 (577)
T PRK06069 82 DQDAVEVFV-REA-PEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEH 159 (577)
T ss_pred CHHHHHHHH-HHH-HHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECC
Confidence 333433332 222 3567899999998876544432 2211 1345688888888766 699999999
Q ss_pred eEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEee
Q 011610 184 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFK 249 (481)
Q Consensus 184 ~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~ 249 (481)
.|+++..++ +...+|...+..++....+.|+.||+|||+ +|+++.++.++|..+..+. .+++.
T Consensus 160 ~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdGi~mA~~aGa~l~~~e--~~q~~ 236 (577)
T PRK06069 160 FVTSLIVEN-GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDME--FVQFH 236 (577)
T ss_pred EEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCCCcCCCCCcCcHHHHHHHHcCCccCCCc--ceeEe
Confidence 999998765 344455543211222246899999999995 4778999999999986553 23322
Q ss_pred eCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCc------ee
Q 011610 250 IADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY------KG 318 (481)
Q Consensus 250 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~------~~ 318 (481)
.. .+.. .|.-+. ..+. ..+ ...++..|+.+..+|. +....+ +++.+..++.+... ..
T Consensus 237 pt--~~~~-~g~l~~-e~~~--g~g----~~lvN~~GeRF~~~y~~~~~el~~rd~--v~~ai~~e~~~g~g~~~~~g~~ 304 (577)
T PRK06069 237 PT--GLVP-SGILIT-EAAR--GEG----GYLINKEGERFMKRYAPQKMELAPRDV--VSRAIMTEIMEGRGFKHESGLC 304 (577)
T ss_pred ee--eeCC-CCcEEE-eecc--CCC----eEEECCCCCCcccccCccccccCCccH--HHHHHHHHHHhcCCccCCCCce
Confidence 11 0000 111110 0000 000 0122334555444332 111111 23333333322211 12
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHHhccC
Q 011610 319 MLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARLLKHC 397 (481)
Q Consensus 319 ~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~l~~~ 397 (481)
.+.+|.-. +..+.+.+.+ | .+..++.. .|+|+.+ -
T Consensus 305 ~v~ld~~~-~~~~~~~~~~----------------------~--~i~~~~~~~~g~D~~~-------------------~ 340 (577)
T PRK06069 305 YVGLDLRH-LGEEKINERL----------------------P--LIREIAKKYAGIDPVT-------------------E 340 (577)
T ss_pred EEEEeccc-CCHHHHHHHh----------------------h--HHHHHHHHHcCCCCCC-------------------C
Confidence 34455421 2222222111 1 11223333 5666521 1
Q ss_pred eEEEcccCCCceeEEecCCCCCCCCCcccc--cccCCCCeEEEEEEee--ccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610 398 TLEVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVLN--VDG--VTGGFNFQNAWSGGYIAGTSIGKLS 471 (481)
Q Consensus 398 ~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~ld--v~g--~~GGynl~~A~~sG~~AG~~aa~~~ 471 (481)
+++|... +..|.|||.+++- ..|. +.++|||||+|||+.. ++| +.||..|.+|+++|++||++|++++
T Consensus 341 ~i~v~p~-----~h~t~GGi~vd~~-~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~ 414 (577)
T PRK06069 341 PIPVRPA-----AHYTMGGIHTDVY-GRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYA 414 (577)
T ss_pred ceeeeec-----cceeCCCceECCC-CcCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 3444433 5689999987643 2332 3455999999999874 676 6799999999999999999999886
Q ss_pred h
Q 011610 472 N 472 (481)
Q Consensus 472 ~ 472 (481)
.
T Consensus 415 ~ 415 (577)
T PRK06069 415 L 415 (577)
T ss_pred h
Confidence 4
No 17
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.92 E-value=6.1e-23 Score=221.15 Aligned_cols=356 Identities=15% Similarity=0.159 Sum_probs=201.4
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC-ceEEecCCceeeccCCCcc-hhHHhh------ccCCCC
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCNVTNGHCAD-KMILAG------HYPRGH 119 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~-k~~~sG~g~~n~~~~~~~~-~~~~~~------~~~~~~ 119 (481)
..++||+|||+|.|||+||+.+++ .|.+|+||||....+ ....+.+|-.........+ +..+.. .+. .+
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~--~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~-~d 86 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAE--AGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWL-GD 86 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCC-CC
Confidence 356899999999999999999999 789999999875442 2222323322111110112 111111 111 23
Q ss_pred hhchhhHHhcCChHHHHHHHHhcCCcceeecCCeee----------------------ecCCChHHHHHHHHHHHHhCCC
Q 011610 120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVF----------------------PVSDSSSSVIDCLLTEAKHRGV 177 (481)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~----------------------p~~~~a~~~~~~l~~~~~~~Gv 177 (481)
..+++.+.. ...+.++|+.++|+++....+|.++ +.......++..|.+.+++.||
T Consensus 87 ~~lv~~l~~--~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi 164 (598)
T PRK09078 87 QDAIEYMCR--EAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNA 164 (598)
T ss_pred HHHHHHHHH--HHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCC
Confidence 334433322 2346778999999987643333221 1111345788899999999999
Q ss_pred EEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCC
Q 011610 178 VLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVP 243 (481)
Q Consensus 178 ~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p 243 (481)
+|++++.+++|..++++...+|...+..++....+.|+.||+|||+ +|+|+.++.++|..+..+..
T Consensus 165 ~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdGi~ma~~aGA~l~~me~ 244 (598)
T PRK09078 165 EFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDMEF 244 (598)
T ss_pred EEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccccCccCCCCCcccHHHHHHHHcCCCccCCch
Confidence 9999999999987641235566653212233458999999999994 57889999999998865432
Q ss_pred ceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCc--
Q 011610 244 SLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY-- 316 (481)
Q Consensus 244 ~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~-- 316 (481)
+++.... ... .+.-+. ..++ ..+ ..++...|+.++..|+ +....+ +++.+..++.+...
T Consensus 245 --~q~~pt~-~~~--~~~l~~-e~~r--g~G----~ilvN~~GeRF~~ey~~~~~el~~rd~--v~~ai~~e~~~~~g~~ 310 (598)
T PRK09078 245 --VQFHPTG-IYG--AGCLIT-EGAR--GEG----GYLTNSEGERFMERYAPSAKDLASRDV--VSRAMTIEIREGRGVG 310 (598)
T ss_pred --heecccc-cCC--CceEEe-eccc--CCc----eEEECCCCCCCchhcCccccccccchH--HHHHHHHHHHhcCCCC
Confidence 2222110 000 111100 0000 000 0122334554444332 111111 23333334333211
Q ss_pred --eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHH
Q 011610 317 --KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARL 393 (481)
Q Consensus 317 --~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~ 393 (481)
...+.+|+ ..++.+.|.+.+.. +.+ .+.. .|+|+.
T Consensus 311 ~~~~~v~ld~-~~~~~~~l~~~~~~-----------------------~~~-~~~~~~g~D~~----------------- 348 (598)
T PRK09078 311 KKKDHIFLHL-DHLDPEVLHERLPG-----------------------ISE-SAKIFAGVDVT----------------- 348 (598)
T ss_pred CCCCEEEEEC-CCCCHHHHHHHHHH-----------------------HHH-HHHHHcCCCCC-----------------
Confidence 11344554 23445444333211 001 1111 355532
Q ss_pred hccCeEEEcccCCCceeEEecCCCCCCCCCccccc------ccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHH
Q 011610 394 LKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTME------SKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIA 463 (481)
Q Consensus 394 l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~e------sk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~A 463 (481)
+-|++|... +..|+|||.++. +.++.. .+.|||||+|||+. -++| +.||..|.+|+.+|++|
T Consensus 349 --~~pi~v~p~-----~h~t~GGi~vd~-~~~v~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~A 420 (598)
T PRK09078 349 --KEPIPVLPT-----VHYNMGGIPTNY-HGEVLTKTGDNPDAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAA 420 (598)
T ss_pred --CCcEEeecc-----cEEcCCCcccCC-CceeecccccccCCccCceeecccccccCCcCcccccchhHHHHHHHHHHH
Confidence 124555443 678999998764 223321 25799999999986 4676 77999999999999999
Q ss_pred HHHHhHHhh
Q 011610 464 GTSIGKLSN 472 (481)
Q Consensus 464 G~~aa~~~~ 472 (481)
|++|++++.
T Consensus 421 g~~aa~~~~ 429 (598)
T PRK09078 421 ALRAAEVIK 429 (598)
T ss_pred HHHHHHhhh
Confidence 999988753
No 18
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.92 E-value=1.2e-22 Score=220.48 Aligned_cols=352 Identities=18% Similarity=0.188 Sum_probs=198.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCc-eEEecCC-ceeeccC--CCcc-hhHHhhc------cCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSK-VKISGGG-RCNVTNG--HCAD-KMILAGH------YPR 117 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k-~~~sG~g-~~n~~~~--~~~~-~~~~~~~------~~~ 117 (481)
..+||+|||||.|||+||+.+++ .|++|+||||....+. ...+.+| ...+.+. ...+ +...+.. +.
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae--~G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~- 80 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQ--RGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWG- 80 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHH--cCCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCC-
Confidence 56899999999999999999999 7999999998755432 1122222 1111111 0111 1111111 11
Q ss_pred CChhchhhHHhcCChHHHHHHHHhcCCcceeecCC-------------------------e----------eeecCCChH
Q 011610 118 GHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDG-------------------------R----------VFPVSDSSS 162 (481)
Q Consensus 118 ~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g-------------------------~----------~~p~~~~a~ 162 (481)
.+....+.+. . ...+.++|+.++|+++.....+ + .|+.+....
T Consensus 81 ~D~~~vr~~v-~-~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~ 158 (657)
T PRK08626 81 CDQEVARMFV-H-TAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGH 158 (657)
T ss_pred CCHHHHHHHH-H-HHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHH
Confidence 1222322221 1 2246678999999887543211 0 011122345
Q ss_pred HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHH
Q 011610 163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGH 228 (481)
Q Consensus 163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~ 228 (481)
.+...|.+.+.+.||+|+.++.|++|..++ +...++.+.+..++.-..+.|+.||+|||+ +|+|.
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~y~~ttn~~~~tGdG~ 237 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDG-KRCYGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEGIGA 237 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCCCCCCCCCCCcChHHH
Confidence 677788888999999999999999999765 445566654312233356889999999994 57899
Q ss_pred HHHHHcCC-CcccCCCceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcc
Q 011610 229 RLAAQLGH-SIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILR 302 (481)
Q Consensus 229 ~la~~~G~-~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~ 302 (481)
.+|.++|. .+..+. .+++.... +.. .|.-+. ..++ ..+ ..+....|+.++.+|. +....+
T Consensus 238 ~mA~~aGaa~l~~mE--~vqfhPt~--~~~-~g~l~~-e~~r--g~G----~ilvn~~G~RF~~~y~p~~~Ela~rd~-- 303 (657)
T PRK08626 238 AIALETGVAPLGNME--AVQFHPTA--IVP-SGILVT-EGCR--GDG----GLLRDKDGYRFMPDYEPEKKELASRDV-- 303 (657)
T ss_pred HHHHHcCCccccCcc--ceEEeccE--ECC-CCeEEE-eecc--CCC----EEEECCCCCCCCcccCcccccccchhH--
Confidence 99999996 554432 23332110 000 111110 0000 000 0122234444444332 111111
Q ss_pred cchhhHHHhHccCc-----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCC
Q 011610 303 LSAWGARYLFSSCY-----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGD 376 (481)
Q Consensus 303 lS~~~~~~~~~~~~-----~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ 376 (481)
+|+.+..++.+... ...+.+|+-. +..+.+.+. +| .+..+++. .|+|+.
T Consensus 304 vsrai~~~~~~g~g~~~~~~~~v~lD~~~-~~~~~i~~~----------------------~~--~i~e~~~~~~giD~~ 358 (657)
T PRK08626 304 VSRRMTEHIRKGKGVKSPYGPHLWLDIRI-LGRKHIETN----------------------LR--EVQEICENFLGIDPA 358 (657)
T ss_pred HHHHHHHHHHhcCCCCCCCCCEEEEECCC-CCHHHHHHH----------------------Hh--HHHHHHHHHcCCCCc
Confidence 33434344433211 1235565421 222222111 11 12334443 578765
Q ss_pred CccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHH
Q 011610 377 TLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFN 452 (481)
Q Consensus 377 ~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGyn 452 (481)
+ .+++|... +..|+|||.+++- .+...|||||+|||+. .++| +.||..
T Consensus 359 ~-------------------~~i~v~P~-----~hytmGGi~vd~~----~~t~~I~GLyAaGE~a~~g~hGanrlggns 410 (657)
T PRK08626 359 K-------------------DWIPVRPT-----QHYSMGGIRTNPT----GESYGLKGLFSAGEAACWDMHGFNRLGGNS 410 (657)
T ss_pred C-------------------ceEEEEec-----ccEecCCceECCC----CCCcccCCEEecccccccCCCCCCccchHH
Confidence 2 34555444 4579999998742 3333699999999986 5787 779999
Q ss_pred HHHHHHHHHHHHHHHhHHhhH
Q 011610 453 FQNAWSGGYIAGTSIGKLSND 473 (481)
Q Consensus 453 l~~A~~sG~~AG~~aa~~~~~ 473 (481)
|.+|+++|++||++||+++..
T Consensus 411 l~~~~v~G~iAg~~aa~~~~~ 431 (657)
T PRK08626 411 LAETVVAGMIVGKYVADFCLG 431 (657)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988643
No 19
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.92 E-value=1.6e-22 Score=217.61 Aligned_cols=355 Identities=17% Similarity=0.191 Sum_probs=200.6
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-C-ceEEecCCceeeccCCCcchhHHhh------ccCCCC
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-S-KVKISGGGRCNVTNGHCADKMILAG------HYPRGH 119 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~-k~~~sG~g~~n~~~~~~~~~~~~~~------~~~~~~ 119 (481)
..++||+|||+|.|||+||+.+++ .|.+|+||||.... . +....|+..|+..+....+...... .+. ..
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~-~d 86 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLAR--AGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWL-GD 86 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCC-CC
Confidence 457899999999999999999999 78999999986443 2 3444455555554321111111110 111 12
Q ss_pred hhchhhHHhcCChHHHHHHHHhcCCcceeecCCeee--ec-------------------CCChHHHHHHHHHHHHhCCCE
Q 011610 120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVF--PV-------------------SDSSSSVIDCLLTEAKHRGVV 178 (481)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~--p~-------------------~~~a~~~~~~l~~~~~~~Gv~ 178 (481)
..+++.+. . ...+.++|+.++|+++....+|.++ +. ......+++.|.+.+.+.|++
T Consensus 87 ~~~v~~~~-~-~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~ 164 (591)
T PRK07057 87 QDAIEFMC-R-EAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQ 164 (591)
T ss_pred HHHHHHHH-H-HHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCE
Confidence 23332221 1 2346778999999988764444332 11 112356888898888899999
Q ss_pred EEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCc
Q 011610 179 LQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPS 244 (481)
Q Consensus 179 i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~ 244 (481)
++.++.++++..++++...+|.+.+...+....+.|+.||+|||+ +|+++.++.++|..+..+.
T Consensus 165 i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me-- 242 (591)
T PRK07057 165 FFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDME-- 242 (591)
T ss_pred EEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccccCCcCCCCCcCcHHHHHHHHcCCCeeCcc--
Confidence 999999999987531345567653212222357899999999995 4788999999999876543
Q ss_pred eeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcc------cchhhHHHhHccCc--
Q 011610 245 LFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILR------LSAWGARYLFSSCY-- 316 (481)
Q Consensus 245 l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~------lS~~~~~~~~~~~~-- 316 (481)
++++.... . .. .+.-+. ..+. ..+ ...+...|+-++.+|. |.... +++.+..++.+...
T Consensus 243 ~~q~~pt~-~-~~-~~~l~~-e~~r--g~g----~ilvn~~GeRF~~~~~---~~~~el~~rd~v~~ai~~e~~~g~g~~ 309 (591)
T PRK07057 243 FWQFHPTG-V-AG-AGVLIT-EGVR--GEG----GILRNKDGERFMERYA---PTLKDLAPRDFVSRSMDQEIKEGRGCG 309 (591)
T ss_pred cccccCCc-c-CC-CceEEe-eccc--CCc----eEEECCCCCCchhhcC---ccccccccHHHHHHHHHHHHHhcCCcC
Confidence 22221110 0 00 111000 0000 000 0122234444443332 11111 22222223322111
Q ss_pred --eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhc-CCCCCCccccCCHHHHHHHHHH
Q 011610 317 --KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGRE-GLSGDTLWASVSNNSLISIARL 393 (481)
Q Consensus 317 --~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~ 393 (481)
...+.+|.-+ +..+.+. . . +|. +..+++.. ++++.
T Consensus 310 ~~~~~v~lD~~~-~~~~~~~----~---~---------------~~~--i~e~~~~~~~~d~~----------------- 347 (591)
T PRK07057 310 PNGDHVLLDLTH-LGAETIM----K---R---------------LPS--IREIALKFANVDCI----------------- 347 (591)
T ss_pred CCCCEEEEeCCC-CCHHHHH----H---H---------------ccH--HHHHHHHhcCCCCC-----------------
Confidence 1245566532 1222111 0 0 110 12233322 34322
Q ss_pred hccCeEEEcccCCCceeEEecCCCCCCCCCcccc-----cccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHH
Q 011610 394 LKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM-----ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAG 464 (481)
Q Consensus 394 l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~-----esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG 464 (481)
+-|+++... +..|+|||.+++ +-.+. +.+.|||||+|||+. .++| +.||..|.+|+++|++||
T Consensus 348 --~~pi~v~p~-----~h~t~GGi~vd~-~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag 419 (591)
T PRK07057 348 --KEPIPVVPT-----IHYQMGGIPTNI-HGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAG 419 (591)
T ss_pred --CCCeeeehh-----HheeCCCeeECC-CCcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHH
Confidence 223555443 568999999874 33443 345799999999986 4666 679999999999999999
Q ss_pred HHHhHHhh
Q 011610 465 TSIGKLSN 472 (481)
Q Consensus 465 ~~aa~~~~ 472 (481)
++|++++.
T Consensus 420 ~~aa~~~~ 427 (591)
T PRK07057 420 NHIVDHVK 427 (591)
T ss_pred HHHHHHhh
Confidence 99998753
No 20
>PRK07121 hypothetical protein; Validated
Probab=99.92 E-value=4.3e-23 Score=218.47 Aligned_cols=377 Identities=18% Similarity=0.174 Sum_probs=205.5
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeec-c------CC-CcchhHHhhcc-
Q 011610 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVT-N------GH-CADKMILAGHY- 115 (481)
Q Consensus 46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~-~------~~-~~~~~~~~~~~- 115 (481)
.++.++||+|||+|.+|++||++|++ .|.+|+||||.. .++....+|+.. ... . .. ..+...+...+
T Consensus 16 ~~~~~~DVvVVGaG~AGl~AA~~aae--~G~~VillEK~~~~gG~s~~sgG~~-~~~~g~~~q~~~g~~d~~~~~~~~~~ 92 (492)
T PRK07121 16 SWDDEADVVVVGFGAAGACAAIEAAA--AGARVLVLERAAGAGGATALSGGVI-YLGGGTAVQKAAGFEDSPENMYAYLR 92 (492)
T ss_pred ccCCccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcccccCeEE-EeCCCcHHHHhcCCCCCHHHHHHHHH
Confidence 34568999999999999999999999 799999999764 455444444321 110 0 00 01122222211
Q ss_pred ----CCCChhchhhHHhcCChHHHHHHHHhcCCcceeecCC-----------eeee---------------------c-C
Q 011610 116 ----PRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDG-----------RVFP---------------------V-S 158 (481)
Q Consensus 116 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g-----------~~~p---------------------~-~ 158 (481)
...+..+++.+.. ...+.++|++++|+++...... ..|+ . .
T Consensus 93 ~~~~~~~d~~l~~~~~~--~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 170 (492)
T PRK07121 93 VAVGPGVDEEKLRRYCE--GSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGP 170 (492)
T ss_pred HHhCCCCCHHHHHHHHH--ccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCC
Confidence 1122333333322 2356789999999877532100 0000 0 0
Q ss_pred -C--ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEc-CeEEEccCC-----------
Q 011610 159 -D--SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEA-DYLLIASGS----------- 223 (481)
Q Consensus 159 -~--~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~a-d~VIlAtG~----------- 223 (481)
. ....+.+.|.+.+++.|++|+++++|++|..++++...+|.... .+....+.| +.||+|||+
T Consensus 171 ~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg~~~N~em~~~~ 248 (492)
T PRK07121 171 GDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR--YGETVAIRARKGVVLAAGGFAMNREMVARY 248 (492)
T ss_pred CCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe--CCcEEEEEeCCEEEECCCCcCcCHHHHHHh
Confidence 1 35678889999999999999999999999876413455676642 222357889 999999994
Q ss_pred ---------------ChhHHHHHHHcCCCcccCCCceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCe
Q 011610 224 ---------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPM 288 (481)
Q Consensus 224 ---------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~ 288 (481)
+|+|+.|+.++|..+..+........... +..+.. .+.+.. .|+.
T Consensus 249 ~p~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~~~~~~~~~~~~~-------~~~~~~-~i~Vn~------------~G~R 308 (492)
T PRK07121 249 APAYAGGLPLGTTGDDGSGIRLGQSAGGATAHMDQVFAWRFIYP-------PSALLR-GILVNA------------RGQR 308 (492)
T ss_pred CCcccCCcCCCCCCCccHHHHHHHHhCCccccCchhhhhCcccC-------CCCcCC-eEEECC------------CCCE
Confidence 35678889999988755422111000000 001111 122222 2333
Q ss_pred EEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHH
Q 011610 289 LVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYIL 368 (481)
Q Consensus 289 lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 368 (481)
+..+.. +... ++..+. ...+....+.+|- ..++ .... ............ .+....+++|+
T Consensus 309 F~nE~~-~~~~---~~~~~~---~~~~~~~~~i~D~------~~~~-~~~~----~~~~~~~~~~~~--~~kadtleeLA 368 (492)
T PRK07121 309 FVNEDT-YGAR---IGQFIL---EQPGGTAYLIVDE------ALFE-EARA----QLRPQIDGRTPG--AWKAETVEELA 368 (492)
T ss_pred eecCCC-cHHH---HHHHHH---hccCCcEEEEEeH------HHHh-hhcc----ccccccccccCc--ccccCCHHHHH
Confidence 222110 0000 111111 1111222332221 1111 0000 000000000000 12234566777
Q ss_pred HhcCCCCCCccccCCHHHHHHHHHH---------------hccCeEEEcccCC--CceeEEecCCCCCCCC-C-cccccc
Q 011610 369 GREGLSGDTLWASVSNNSLISIARL---------------LKHCTLEVAGKGQ--FKDEFVTAGGVPLSEI-S-LNTMES 429 (481)
Q Consensus 369 ~~~~~~~~~~~~~l~~~~~~~l~~~---------------l~~~~~~v~~~~~--~~~a~vt~GGv~~~ei-~-~~t~es 429 (481)
+.++++++...+.+ +++++++.. +.+-||+.....+ ......|.||+.+++- - ..+-+.
T Consensus 369 ~~~gid~~~l~~tv--~~yN~~~~~G~D~~f~r~~~~l~pi~~~PfYa~~~~~~~~~~~~~T~GGl~id~~~~qVld~~g 446 (492)
T PRK07121 369 RKLGIPPGGLQATV--DAYNRAAAGGEDPPFHKQPEWLRPLDTGPFAAIDLSLGKAPTPGFTLGGLRVDEDTGEVLRADG 446 (492)
T ss_pred HHhCCCHHHHHHHH--HHHHHHhhcCCCcccCCCcccccccccCCeEEEEEecccCCcceeeccCeeECCCcceEECCCC
Confidence 77777766544433 344444432 3344555544332 1136689999998854 2 223367
Q ss_pred cCCCCeEEEEEEe-eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610 430 KIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS 471 (481)
Q Consensus 430 k~~~gLy~~GE~l-dv~g--~~GGynl~~A~~sG~~AG~~aa~~~ 471 (481)
++|||||+|||+. .+.| +.+|.++.+|+++||+||++|++.+
T Consensus 447 ~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~~ 491 (492)
T PRK07121 447 APIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAARA 491 (492)
T ss_pred CCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhhc
Confidence 8999999999985 4554 5689999999999999999998653
No 21
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.92 E-value=1.4e-22 Score=217.69 Aligned_cols=356 Identities=16% Similarity=0.169 Sum_probs=197.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCceeeccCCCcc-hhHHhhc-----cCCCChh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGHCAD-KMILAGH-----YPRGHKE 121 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~~~~~~~~-~~~~~~~-----~~~~~~~ 121 (481)
.++||+|||+|.|||+||+.+++ .|.+|+||||..+. .....+++|-+........+ +..++.. ....++.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~ 83 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQ--SGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQD 83 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 46899999999999999999999 79999999987543 22223333322111111112 2122211 1112334
Q ss_pred chhhHHhcCChHHHHHHHHhcCCcceeecCCeeee---------------------cCCChHHHHHHHHHHHHhCCCEEE
Q 011610 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP---------------------VSDSSSSVIDCLLTEAKHRGVVLQ 180 (481)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p---------------------~~~~a~~~~~~l~~~~~~~Gv~i~ 180 (481)
+++.+.. ...+.++|+.++|+++....++.++. .......++..|.+.+.+.|++++
T Consensus 84 ~v~~~~~--~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~ 161 (588)
T PRK08958 84 AIEYMCK--TGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIF 161 (588)
T ss_pred HHHHHHH--HHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEE
Confidence 4433322 23577899999999986533332211 112356788899988888999999
Q ss_pred cCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCcee
Q 011610 181 TGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLF 246 (481)
Q Consensus 181 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~ 246 (481)
+++.++++..++++...+|...+..++....+.|+.||+|||+ +|+++.++.++|..+..+.. +
T Consensus 162 ~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~--~ 239 (588)
T PRK08958 162 SEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEM--W 239 (588)
T ss_pred eCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccccccccCCCCCCcHHHHHHHHcCCcCcCCcc--e
Confidence 9999999987531345566653212333457899999999994 57899999999999865543 3
Q ss_pred EeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCce----
Q 011610 247 TFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCYK---- 317 (481)
Q Consensus 247 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~~---- 317 (481)
++... .... .+.-+. ..++ ..+ ..++...|+.++..|. +....+ +++.+..++.+....
T Consensus 240 q~~Pt--~~~~-~~~l~~-e~~r--g~g----~ilvN~~GeRF~~~y~~~~~el~~rd~--v~~ai~~e~~~~~g~~~~~ 307 (588)
T PRK08958 240 QFHPT--GIAG-AGVLVT-EGCR--GEG----GYLLNKHGERFMERYAPNAKDLAGRDV--VARSIMIEIREGRGCDGPW 307 (588)
T ss_pred EeecC--cccC-CceEEe-eccc--cCc----eEEECCCCCChhhhhCccccccCChhH--HHHHHHHHHHhcCCCcCCC
Confidence 32211 0000 111100 0000 000 0112234444443331 111111 223333333222110
Q ss_pred -eEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHHhc
Q 011610 318 -GMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARLLK 395 (481)
Q Consensus 318 -~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~l~ 395 (481)
..+.+|+ ..+..+.+.+.+ + . . ...++. .++++.
T Consensus 308 ~~~v~ld~-~~l~~~~l~~~~-------~---------~--~------~~~~~~~~~~d~~------------------- 343 (588)
T PRK08958 308 GPHAKLKL-DHLGKEVLESRL-------P---------G--I------LELSRTFAHVDPV------------------- 343 (588)
T ss_pred CCeEEEEc-ccCCHHHHHHHc-------c---------c--H------HHHHHHhcCCCcC-------------------
Confidence 1122332 122222222111 1 0 0 001111 123321
Q ss_pred cCeEEEcccCCCceeEEecCCCCCCCCCccccc------ccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHH
Q 011610 396 HCTLEVAGKGQFKDEFVTAGGVPLSEISLNTME------SKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGT 465 (481)
Q Consensus 396 ~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~e------sk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~ 465 (481)
+-|++|... +..|+|||.+++ +..+.. .+.|||||+|||+. .++| +.||..|.+|+++|++||+
T Consensus 344 ~~~i~v~p~-----~h~t~GGi~vd~-~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~ 417 (588)
T PRK08958 344 KEPIPVIPT-----CHYMMGGIPTKV-TGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGL 417 (588)
T ss_pred CCcceeehh-----hcEeCCCeeECC-CceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHH
Confidence 123444433 678999998874 223321 26899999999986 4677 7899999999999999999
Q ss_pred HHhHHhh
Q 011610 466 SIGKLSN 472 (481)
Q Consensus 466 ~aa~~~~ 472 (481)
+|++++.
T Consensus 418 ~aa~~~~ 424 (588)
T PRK08958 418 HLQESLA 424 (588)
T ss_pred HHHHHhh
Confidence 9998763
No 22
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.92 E-value=2.3e-22 Score=209.04 Aligned_cols=342 Identities=15% Similarity=0.139 Sum_probs=191.9
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCceEEecCCceeeccCCCcchhHHhhcc-----CCCChhc
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKEF 122 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~~ 122 (481)
.++||+|||+|.||++||+.++ .|.+|+||||... +.....+++|.+...+. .+...+.... ...+..+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~---~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~--d~~~~~~~d~~~~g~~~~d~~l 77 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR---KDLKILMVSKGKLNECNTYLAQGGISVARNK--DDITSFVEDTLKAGQYENNLEA 77 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc---cCCCEEEEecCCCCCCchHHHhHhheeCCCC--CCHHHHHHHHHHHhCCCCCHHH
Confidence 4689999999999999999985 4899999997644 33333344444432222 1222332221 1123334
Q ss_pred hhhHHhcCChHHHHHHHHhcCCcceeecCC------------ee-eecCCChHHHHHHHHHHHHh-CCCEEEcCceEEEE
Q 011610 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDG------------RV-FPVSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTTA 188 (481)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g------------~~-~p~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i 188 (481)
++.+.. ...+.++|+.++|+++...... +. ++.......+++.|.+.+++ .||+|+++++|++|
T Consensus 78 v~~~~~--~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~L 155 (433)
T PRK06175 78 VKILAN--ESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDI 155 (433)
T ss_pred HHHHHH--HHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeee
Confidence 433322 2357789999999887543211 11 22233456788899888875 59999999999999
Q ss_pred EecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCcee-EeeeCc-
Q 011610 189 SSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLF-TFKIAD- 252 (481)
Q Consensus 189 ~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~-~~~~~~- 252 (481)
..++ +..++|.... .++...+.|+.||+|||+ +|+++.++.++|+++..+..... |....+
T Consensus 156 i~~~-~~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~~l~~~~~~~~~~tGdg~~ma~~~Ga~l~~m~~~q~~p~~~~~~ 232 (433)
T PRK06175 156 IEND-NTCIGAICLK--DNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPTAFYEE 232 (433)
T ss_pred EecC-CEEEEEEEEE--CCcEEEEEcCeEEEccCcccccCcCcCCCCCcchHHHHHHHHcCCCCcCCceEEEeceEeccC
Confidence 8765 4455654332 122247899999999996 57889999999999865532111 110100
Q ss_pred cc-cc-cccCceecc-EEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCC
Q 011610 253 SQ-LT-ELSGVSFPK-VVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLH 329 (481)
Q Consensus 253 ~~-~~-~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~ 329 (481)
.. .. -+-.-.++. ..+-+ + ..|+.+.... .... .+++.+.....+. ....+.+|.-. +.
T Consensus 233 ~~~~~~~l~~~~~~~~g~ilV--N----------~~G~RF~~E~--~~~~--~~~~ai~~~~~~~-~~~~v~~D~~~-~~ 294 (433)
T PRK06175 233 TIEGKKFLISESVRGEGGKLL--N----------SKGERFVDEL--LPRD--VVTKAILEEMKKT-GSNYVYLDITF-LD 294 (433)
T ss_pred CCCCcceEeehhhcCCceEEE--C----------CCCCChhhcc--ccHH--HHHHHHHHHHHhc-CCCeEEEeccc-Cc
Confidence 00 00 000000000 01112 1 1233322111 0111 1223222222221 12245566421 22
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCce
Q 011610 330 IEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKD 409 (481)
Q Consensus 330 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~ 409 (481)
.+.+. .+. |. ....+++ .|+|+.. -++++...
T Consensus 295 ~~~~~----~~~------------------~~-~yn~~~~-~G~D~~~-------------------~~i~v~p~----- 326 (433)
T PRK06175 295 KDFLK----NRF------------------PT-IYEECLK-RGIDITK-------------------DAIPVSPA----- 326 (433)
T ss_pred HHHHH----HHH------------------HH-HHHHHHH-hCcCCCC-------------------CcEEEEcc-----
Confidence 22221 111 11 1122222 4665432 13444332
Q ss_pred eEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610 410 EFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS 471 (481)
Q Consensus 410 a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~ 471 (481)
...|.|||.+++- .+ +++||||+|||+. -++| +.||.+|.+|+++|++||++|+...
T Consensus 327 ~h~t~GGi~vd~~----~~-t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 327 QHYFMGGIKVDLN----SK-TSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred eeeecCCEEECCC----cc-ccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 4579999987642 22 7899999999986 4776 7799999999999999999998654
No 23
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.92 E-value=4.7e-22 Score=213.91 Aligned_cols=353 Identities=16% Similarity=0.134 Sum_probs=197.7
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCceeecc-C-CCcchhHHhhcc-----CCCChh
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTN-G-HCADKMILAGHY-----PRGHKE 121 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~~~-~-~~~~~~~~~~~~-----~~~~~~ 121 (481)
.+||+|||+|.|||+||+.+++ .|++|+||||.... +....+++|-....+ . ...++..+.... ...+..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 80 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAE--AGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQP 80 (589)
T ss_pred CccEEEECchHHHHHHHHHHHH--cCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHH
Confidence 4699999999999999999999 79999999987554 333344333321111 1 111122222111 112333
Q ss_pred chhhHHhcCChHHHHHHHHhcCCcceeecCC---------eeeecC-----CChHHHHHHHHHHHHhCC----CEEEcCc
Q 011610 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDG---------RVFPVS-----DSSSSVIDCLLTEAKHRG----VVLQTGK 183 (481)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g---------~~~p~~-----~~a~~~~~~l~~~~~~~G----v~i~~~~ 183 (481)
+++.+... ..+.++|+.++|+++....++ ..++.. .....++..|.+.+++.+ |+++.++
T Consensus 81 ~v~~~~~~--s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~ 158 (589)
T PRK08641 81 PVKAMCEA--APGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGW 158 (589)
T ss_pred HHHHHHHH--HHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeE
Confidence 44333222 246778999999988643322 222221 235677888887776543 8899999
Q ss_pred eEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEee
Q 011610 184 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFK 249 (481)
Q Consensus 184 ~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~ 249 (481)
.++++..++++...+|...+...+.-..+.|+.||+|||+ +|+|+.+|.++|..+..+.- +++.
T Consensus 159 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~y~~tt~~~~~tGdG~~mA~~aGA~l~~mef--~q~h 236 (589)
T PRK08641 159 EFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEF--IQIH 236 (589)
T ss_pred EEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCchHHHHHHHHcCCCCcCCcc--EEEe
Confidence 9999987531345677665312222346899999999995 57899999999998865542 3332
Q ss_pred eCccccccccCc-eeccEEEEEEecCccCCCCcc-ceecCeE-EEe--c---c-ccchhhcccchhhHHHhHccC----c
Q 011610 250 IADSQLTELSGV-SFPKVVAKLKLENVQRSSPYL-TQVGPML-VTH--W---G-LSGPVILRLSAWGARYLFSSC----Y 316 (481)
Q Consensus 250 ~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~-~~~Ge~l-ft~--~---g-lsG~~il~lS~~~~~~~~~~~----~ 316 (481)
..-.. . .+. .+-...++ ..| ..+. ...|+-+ |-. | + +....+ +++.+..++.+.+ .
T Consensus 237 Pt~~~-~--~~~~~l~~e~~r--g~G----~~l~~n~~G~Rf~f~~e~~~~~~~l~~rd~--v~~ai~~~~~~~~~g~~g 305 (589)
T PRK08641 237 PTAIP-G--DDKLRLMSESAR--GEG----GRVWTYKDGKPWYFLEEKYPAYGNLVPRDI--ATREIFDVCVEQKLGING 305 (589)
T ss_pred eeeec-C--CCcceEeeeeec--cCC----cEEEECCCCCCcccccccCCcccccCChhH--HHHHHHHHHHHhcCCCCC
Confidence 11000 0 110 00000000 000 0011 1223331 111 1 1 111111 2232323231211 1
Q ss_pred eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhcc
Q 011610 317 KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKH 396 (481)
Q Consensus 317 ~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~ 396 (481)
...+.+|+- ..+.++|.+.+.. +++.+-+..|+|+. +
T Consensus 306 ~~~v~ld~~-~~~~e~l~~~~~~-----------------------~~~~~~~~~g~D~~-------------------~ 342 (589)
T PRK08641 306 ENMVYLDLS-HKDPKELDIKLGG-----------------------ILEIYEKFTGDDPR-------------------K 342 (589)
T ss_pred CceEEEEcC-CCCHHHHHHHHHH-----------------------HHHHHHHHcCCCCC-------------------C
Confidence 123566653 3355555433321 11111111366642 2
Q ss_pred CeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe-eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610 397 CTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN 472 (481)
Q Consensus 397 ~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l-dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~ 472 (481)
.|++|... +..|+|||.+++- ..+.|||||+|||+. .++| ++||..|..|+.+|++||++|++++.
T Consensus 343 ~~i~v~p~-----~h~~~GGi~vd~~-----~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~ 411 (589)
T PRK08641 343 VPMKIFPA-----VHYSMGGLWVDYD-----QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIK 411 (589)
T ss_pred CceeeehH-----HheeCCCeEECCC-----CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 24556544 4689999988743 357899999999986 5677 56999999999999999999998764
No 24
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.91 E-value=5.3e-22 Score=211.74 Aligned_cols=350 Identities=17% Similarity=0.148 Sum_probs=201.8
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCceeeccCCCcchhHHhhcc-----CCCC
Q 011610 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGHCADKMILAGHY-----PRGH 119 (481)
Q Consensus 46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~ 119 (481)
.++.++||+|||+|.|||+||+.+++ .|.+|+||||.... .....+++|-..... ...++..+.... ...+
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae--~G~~VilleK~~~~~g~s~~a~Ggi~a~~~-~~ds~e~~~~d~~~~g~g~~d 88 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARR--AGRRVLVVTKAALDDGSTRWAQGGIAAVLD-PGDSPEAHVADTLVAGAGLCD 88 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHH--cCCeEEEEEccCCCCCchhhhccceeeccC-CCCCHHHHHHHHHHhcCCCCC
Confidence 45678999999999999999999999 78999999987554 222233333221111 111122222111 1123
Q ss_pred hhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeee---------c------CCChHHHHHHHHHHHHhCCCEEEcCce
Q 011610 120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP---------V------SDSSSSVIDCLLTEAKHRGVVLQTGKV 184 (481)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p---------~------~~~a~~~~~~l~~~~~~~Gv~i~~~~~ 184 (481)
..+++.+.. ...+.++|+.++|+++....+|.+++ . ......+.+.|.+.+++.||++++++.
T Consensus 89 ~~~v~~~~~--~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~ 166 (541)
T PRK07804 89 PDAVRSLVA--EGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHAL 166 (541)
T ss_pred HHHHHHHHH--HHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeE
Confidence 344433322 23467889999999887544333221 1 123567889999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEeec---ccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeE
Q 011610 185 VTTASSDNAGRKFLLKVEKR---TMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFT 247 (481)
Q Consensus 185 V~~i~~~~~~~~~~V~~~~~---~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~ 247 (481)
|+++..++++...+|.+.+. ..++...+.|+.||+|||+ +|+++.++.++|+.+..+.- ++
T Consensus 167 v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~--~q 244 (541)
T PRK07804 167 ALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLEF--VQ 244 (541)
T ss_pred eeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCCCccCCCCcchHHHHHHHHcCCCCcCCcc--ee
Confidence 99998764123455655310 1111257899999999995 56789999999999865432 22
Q ss_pred eeeC---cccc--c--cccCceeccEEEEEEecCccCCCCccceecCeEEEecc---ccchhhcccchhhHHHhHccCce
Q 011610 248 FKIA---DSQL--T--ELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG---LSGPVILRLSAWGARYLFSSCYK 317 (481)
Q Consensus 248 ~~~~---~~~~--~--~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g---lsG~~il~lS~~~~~~~~~~~~~ 317 (481)
+... .+.. . .+-.-.++.... ++ ++..|+.+..+|. -..|-- .+++.+..++.+.+ .
T Consensus 245 ~~pt~~~~~~~~~~~~~l~~~~~r~~g~-~l----------vn~~G~RF~~~~~~~~E~a~rd-~v~~ai~~~~~~~g-~ 311 (541)
T PRK07804 245 FHPTVLFLGPAAGGQRPLISEAVRGEGA-IL----------VDAQGNRFMAGVHPLADLAPRD-VVAKAIDRRMKATG-D 311 (541)
T ss_pred EecceecCCcccccccceechhhcCCce-EE----------ECCCCCCCccccCcccccCcHH-HHHHHHHHHHHhcC-C
Confidence 2110 0000 0 000000100000 11 1223333322211 111110 13333333332212 2
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccC
Q 011610 318 GMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHC 397 (481)
Q Consensus 318 ~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~ 397 (481)
..+.+|.-+ .+ .+.. .. | .+..+++..|+|+.+ .
T Consensus 312 ~~v~lD~~~---~~----~~~~---~~---------------p--~i~~~~~~~gid~~~-------------------~ 345 (541)
T PRK07804 312 DHVYLDARG---IE----GFAR---RF---------------P--TITASCRAAGIDPVR-------------------Q 345 (541)
T ss_pred CEEEEeCcc---HH----HHHH---Hh---------------h--HHHHHHHHhCcCCcC-------------------C
Confidence 246666532 11 1111 11 1 133456667888764 1
Q ss_pred eEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610 398 TLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS 471 (481)
Q Consensus 398 ~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~ 471 (481)
+++|... +..|+|||.+++- ++ +.+||||+|||+. -++| +.||..+.+|..+|++||++|++++
T Consensus 346 ~i~v~p~-----~h~t~GGi~vd~~----~~-t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~ 413 (541)
T PRK07804 346 PIPVAPA-----AHYSCGGVVTDVY----GR-TSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAHA 413 (541)
T ss_pred eEEEEHH-----HhhcCCCEEECCC----Cc-ccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555432 5679999987632 33 6899999999986 5676 6789999999999999999998775
No 25
>PLN02815 L-aspartate oxidase
Probab=99.91 E-value=7.7e-22 Score=211.33 Aligned_cols=354 Identities=15% Similarity=0.107 Sum_probs=200.3
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCceeeccCCCcchhHHhhcc-----CCCChh
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKE 121 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~ 121 (481)
..++||+|||+|.|||+||+.+++ .| +|+||||.... .....+++|-+..... ..++..++... ...++.
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae--~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~-~Ds~e~~~~d~~~~g~~~~d~~ 102 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAE--YG-TVAIITKDEPHESNTNYAQGGVSAVLDP-SDSVESHMRDTIVAGAFLCDEE 102 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhh--CC-CEEEEECCCCCCCcHHHhhcccccCCCC-CCCHHHHHHHHHHhccCCCcHH
Confidence 346899999999999999999999 67 89999987543 3233333332211111 11222222221 112334
Q ss_pred chhhHHhcCChHHHHHHHHhcCCcceeecCCee--------------eecCCChHHHHHHHHHHHHhC-CCEEEcCceEE
Q 011610 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV--------------FPVSDSSSSVIDCLLTEAKHR-GVVLQTGKVVT 186 (481)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~--------------~p~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~ 186 (481)
+++.+.. ...+.++|+.++|+++....++.+ ++.......++..|.+.+++. |++|++++.++
T Consensus 103 lv~~~~~--~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~ 180 (594)
T PLN02815 103 TVRVVCT--EGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAI 180 (594)
T ss_pred HHHHHHH--HHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhh
Confidence 4433322 234678899999998864433221 111223567888898888765 89999999999
Q ss_pred EEEecCCCC---eEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCcee-Ee
Q 011610 187 TASSDNAGR---KFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLF-TF 248 (481)
Q Consensus 187 ~i~~~~~~~---~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~-~~ 248 (481)
+|..+++++ ..+|...+..++....+.|+.||+|||+ +|+|+.|+.++|..+..+....+ |.
T Consensus 181 ~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~ttn~~~~tGDGi~mA~~aGA~l~~mefvQfhPt 260 (594)
T PLN02815 181 DLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAMAHRAQAVVSNMEFVQFHPT 260 (594)
T ss_pred eeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceeeCCCCCCCCCcccHHHHHHHHcCCcEecCceeEEeee
Confidence 998753122 4566654312233357899999999994 57899999999999865542221 11
Q ss_pred eeCccc--c-c---cccCceeccEEEEEEecCccCCCCccceecCeEEEeccc----cchhhcccchhhHHHhHccCcee
Q 011610 249 KIADSQ--L-T---ELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGL----SGPVILRLSAWGARYLFSSCYKG 318 (481)
Q Consensus 249 ~~~~~~--~-~---~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~gl----sG~~il~lS~~~~~~~~~~~~~~ 318 (481)
.+..+. . . .-.+.-+. ..++ ..+ ..+++..|+-+...|.- ....+ +++.+..+..+.+ ..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~-ea~r--g~G----~ilvN~~GeRF~~~y~~~~ela~rd~--va~ai~~e~~~~~-~~ 330 (594)
T PLN02815 261 ALADEGLPIKPAKARENAFLIT-EAVR--GDG----GILYNLAGERFMPLYDERAELAPRDV--VARSIDDQLKKRN-EK 330 (594)
T ss_pred eecCCCccccccccccccceee-hhhc--cCC----cEEECCCCCCCccccCcccccCChHH--HHHHHHHHHHhcC-CC
Confidence 111100 0 0 00001000 0000 000 11223345554444431 11111 3333333332221 22
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCe
Q 011610 319 MLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCT 398 (481)
Q Consensus 319 ~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~ 398 (481)
.+.+|.-. +..+++.+. . | .+. ..+...|+|+.+ -|
T Consensus 331 ~v~lD~~~-~~~~~~~~~-------~---------------p-~i~-~~~~~~GiD~~k-------------------~p 366 (594)
T PLN02815 331 YVLLDISH-KPREEILSH-------F---------------P-NIA-AECLKRGLDITK-------------------QP 366 (594)
T ss_pred EEEEeCCC-CCHHHHHHH-------C---------------H-HHH-HHHHHhCcCCCC-------------------Cc
Confidence 45666532 223222111 1 1 111 223345776532 23
Q ss_pred EEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610 399 LEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS 471 (481)
Q Consensus 399 ~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~ 471 (481)
++|... +..|+|||.+|+- . .+.|||||+|||+. .++| +.||..|..|..+|++||++|++++
T Consensus 367 i~v~P~-----~hyt~GGi~vD~~----~-~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~ 433 (594)
T PLN02815 367 IPVVPA-----AHYMCGGVRTGLQ----G-ETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHM 433 (594)
T ss_pred eeeech-----hcEeCCCeeECCC----C-ceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 555444 5689999988632 2 25899999999986 5777 7799999999999999999998764
No 26
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.91 E-value=3.4e-22 Score=211.14 Aligned_cols=342 Identities=18% Similarity=0.201 Sum_probs=196.7
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCce-EEecCCceeeccCCCcchhHHhhcc-----CCCChhc
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKV-KISGGGRCNVTNGHCADKMILAGHY-----PRGHKEF 122 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~-~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~~ 122 (481)
++||+|||+|+|||+||+.+++ .|. |+||||... +... ...|+..+...... +++.+.... ...++.+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~--~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~d--s~e~~~~d~~~~~~~~~d~~~ 76 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALAD--QGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETD--SIDSHVEDTLAAGAGICDREA 76 (488)
T ss_pred CccEEEECccHHHHHHHHHHHh--CCC-EEEEEccCCCCCcchhcCcCeeeeecCCC--CHHHHHHHHHHhcCCcCCHHH
Confidence 4799999999999999999998 676 999997743 3322 23333223222211 111222111 1123344
Q ss_pred hhhHHhcCChHHHHHHHHhcCCcceeecCC-------------eeeec-CCChHHHHHHHHHHHHh-CCCEEEcCceEEE
Q 011610 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDG-------------RVFPV-SDSSSSVIDCLLTEAKH-RGVVLQTGKVVTT 187 (481)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g-------------~~~p~-~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~ 187 (481)
++.+.. ...+.++|++++|+++.....+ +.++. ......+.+.|.+.+++ .|++|++++.|++
T Consensus 77 v~~~~~--~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~ 154 (488)
T TIGR00551 77 VEFVVS--DARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALD 154 (488)
T ss_pred HHHHHH--hHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeee
Confidence 433322 3457889999999988643322 22221 22456788999999987 6999999999999
Q ss_pred EEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeC--
Q 011610 188 ASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIA-- 251 (481)
Q Consensus 188 i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~-- 251 (481)
|..++ +...+|.+.+ .++...+.|+.||+|||+ +|+|+.++.++|..+..+.. +++...
T Consensus 155 l~~~~-g~v~Gv~~~~--~~~~~~i~A~~VVlAtGG~~~~~~~~~~~~~~tGdG~~~A~~aGa~l~~me~--~q~~pt~~ 229 (488)
T TIGR00551 155 LLIET-GRVVGVWVWN--RETVETCHADAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEF--NQFHPTAL 229 (488)
T ss_pred eeccC-CEEEEEEEEE--CCcEEEEEcCEEEECCCcccCCCCCcCCCCccCcHHHHHHHHcCCcEECCcc--eEEEeeEe
Confidence 98764 3445566653 122357899999999995 46789999999999765432 222110
Q ss_pred -cccc-ccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccch-hhc-ccchhhHHHhHccCceeEEEEecCCC
Q 011610 252 -DSQL-TELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGP-VIL-RLSAWGARYLFSSCYKGMLTVDFVPD 327 (481)
Q Consensus 252 -~~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~-~il-~lS~~~~~~~~~~~~~~~~~~d~~p~ 327 (481)
.+.. ..+-.-.++.... + ++...|+.++.+|.-.+. +.. -+++.+..++.+.+.+ .+.+|.-+
T Consensus 230 ~~~~~~~~l~~~~~~g~g~-~----------lvn~~G~RF~~~~~~~~el~~rd~v~~ai~~~~~~~~~~-~v~ld~~~- 296 (488)
T TIGR00551 230 YKPRARYFLITEAVRGEGA-Y----------LVDRDGTRFMADFHPRGELAPRDIVARAIDHEMKRGGAD-CVFLDASG- 296 (488)
T ss_pred cCCCCcceeeehhhcCCce-E----------EECCCCCChhhccCcccccCchHHHHHHHHHHHHhcCCC-eEEecCcc-
Confidence 0000 0000000000000 1 122234443332211010 000 1233333343332221 24454421
Q ss_pred CCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCC
Q 011610 328 LHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQF 407 (481)
Q Consensus 328 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~ 407 (481)
+.+ +.. .. | .+..+++..|+|+.+ -|++|...
T Consensus 297 -----~~~-~~~---~~---------------~--~~~~~~~~~G~D~~~-------------------~~i~v~p~--- 328 (488)
T TIGR00551 297 -----IEA-FRQ---RF---------------P--TIYAKCLGAGIDPTR-------------------EPIPVVPA--- 328 (488)
T ss_pred -----hHH-HHH---Hc---------------c--hHHHHHHHhCCCCCC-------------------Cceecccc---
Confidence 111 111 11 1 134455567888753 13445443
Q ss_pred ceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610 408 KDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS 471 (481)
Q Consensus 408 ~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~ 471 (481)
+..|.|||.+++- .+ +.|||||+|||+. .++| +.||..|.+|..+|++||++|++++
T Consensus 329 --~h~t~GGi~vd~~----~~-t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 389 (488)
T TIGR00551 329 --AHYTCGGISVDDH----GR-TTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP 389 (488)
T ss_pred --cEEecCCEEECCC----Cc-ccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 5789999998742 22 5899999999986 5777 6789999999999999999998764
No 27
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.91 E-value=7.7e-22 Score=212.49 Aligned_cols=359 Identities=14% Similarity=0.103 Sum_probs=194.0
Q ss_pred EEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCC--ceEEecC--CceeeccCCCcchhHHhhccC-----CCChhc
Q 011610 53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLS--KVKISGG--GRCNVTNGHCADKMILAGHYP-----RGHKEF 122 (481)
Q Consensus 53 VvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~--k~~~sG~--g~~n~~~~~~~~~~~~~~~~~-----~~~~~~ 122 (481)
|+|||+|+|||+||+.+++ .|.+|+||||.. +++ +..+.|+ +.|+..+.. .++..+..... ..+..+
T Consensus 1 VlVVG~G~AGl~AAl~Aae--~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~-ds~e~~~~d~~~~g~~~~d~~l 77 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAE--LGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDG-DSPWRHFDDTVKGGDFRARESP 77 (603)
T ss_pred CEEECccHHHHHHHHHHHH--cCCCEEEEEecCCCCCccchhhhhhhhhhcccCCCC-CCHHHHHHHHHHhcCCCCCHHH
Confidence 7999999999999999999 799999999875 543 3444443 345433221 12222222111 112333
Q ss_pred hhhHHhcCChHHHHHHHHhcCCcceeecCCee---------ee-----cCCChHHHHHHHHHHHHh----CCCEEEcCce
Q 011610 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------FP-----VSDSSSSVIDCLLTEAKH----RGVVLQTGKV 184 (481)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------~p-----~~~~a~~~~~~l~~~~~~----~Gv~i~~~~~ 184 (481)
++.+. .. ..+.++|+.++|+++....++.+ ++ .......++..|.+.+++ .||++++++.
T Consensus 78 v~~l~-~~-s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~ 155 (603)
T TIGR01811 78 VKRLA-VA-SPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWE 155 (603)
T ss_pred HHHHH-HH-HHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcE
Confidence 33322 21 34788999999998865433321 11 112456677777666544 3899999999
Q ss_pred EEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeee
Q 011610 185 VTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKI 250 (481)
Q Consensus 185 V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~ 250 (481)
|++|..++++..++|.+.+..++....+.|+.||+|||+ +|+|+.+|.++|+.+..+.- +++..
T Consensus 156 v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~~t~~~~~tGdGi~mA~~aGa~l~~me~--vq~~P 233 (603)
T TIGR01811 156 MLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEF--IQIHP 233 (603)
T ss_pred EEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCcCCccCCCCCcCcHHHHHHHHcCCCCcCCcc--eEEEe
Confidence 999987541245677665311222357899999999996 58899999999998654432 22211
Q ss_pred Cccccc-c--ccCceeccEEE----EEEecCccCCCCccce--ecCe--EEE-ec---cccch-hhcccchhhHHHhHcc
Q 011610 251 ADSQLT-E--LSGVSFPKVVA----KLKLENVQRSSPYLTQ--VGPM--LVT-HW---GLSGP-VILRLSAWGARYLFSS 314 (481)
Q Consensus 251 ~~~~~~-~--l~G~~~~~~~~----~~~~~~~~~~~~~~~~--~Ge~--lft-~~---glsG~-~il~lS~~~~~~~~~~ 314 (481)
.--... . ..+.-+. ..+ .++++........... .|+- ... .| +-.-| -+ +|+.+..++.+.
T Consensus 234 t~~~~~g~~~~~~~li~-ea~rgeg~ilvn~~~~~~~~~~~~~~g~r~~f~~~~~~~~~~la~rd~--vs~ai~~~~~~g 310 (603)
T TIGR01811 234 TAIPVDGTWQSKLRLMS-ESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFLERRYPAFGNLVPRDI--ASRAIFQVCDAG 310 (603)
T ss_pred eeecCCCcccccceEee-eeeccCCcEEECccccccccccccccCchhhhhhhhcccccccCchHH--HHHHHHHHHHhc
Confidence 000000 0 0000000 000 0111100000000111 2332 111 11 11011 11 334444444432
Q ss_pred C----ceeEEEEecCCCCCHHHHH-HHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHH
Q 011610 315 C----YKGMLTVDFVPDLHIEDMQ-SILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLIS 389 (481)
Q Consensus 315 ~----~~~~~~~d~~p~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 389 (481)
+ ....+++|+-+- .. ++. +++.. .+| .+.+.+.+..|+|+.
T Consensus 311 ~g~~~~~~~v~ld~~~~-~~-~~~~~~~~~------------------~~~-~~~~~~~~~~g~d~~------------- 356 (603)
T TIGR01811 311 KGVGPGENAVYLDFSDA-DE-RLGRKEIDA------------------KYG-NLFEMYEKFTGDDPY------------- 356 (603)
T ss_pred CCcCCCCCeEEEEcCCC-cc-cccHHHHHH------------------HhH-HHHHHHHHhcCCCcc-------------
Confidence 1 112355555321 11 110 11111 111 112222222466643
Q ss_pred HHHHhccCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe-eccc--CcchHHHHHHHHHHHHHHHH
Q 011610 390 IARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYIAGTS 466 (481)
Q Consensus 390 l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l-dv~g--~~GGynl~~A~~sG~~AG~~ 466 (481)
+-|++|... +..++|||.+|+-. .+.+||||+|||+. .++| +.||..|.-|+.+|++||++
T Consensus 357 ------~~~i~v~p~-----~H~~~gG~~~d~~~-----~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~ 420 (603)
T TIGR01811 357 ------KVPMRIFPA-----VHYTMGGLWVDYDQ-----MTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPF 420 (603)
T ss_pred ------CCeeeeecc-----cceeCCCeeECCCC-----cccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHH
Confidence 235566555 56899999986422 36799999999975 4666 56999999999999999999
Q ss_pred HhHHh
Q 011610 467 IGKLS 471 (481)
Q Consensus 467 aa~~~ 471 (481)
|++++
T Consensus 421 aa~~~ 425 (603)
T TIGR01811 421 TIPNY 425 (603)
T ss_pred HHHHH
Confidence 99875
No 28
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.91 E-value=1.5e-21 Score=210.13 Aligned_cols=353 Identities=17% Similarity=0.207 Sum_probs=194.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCc-eEEecCCceeeccCCCcc-hhHHh------hccCCCCh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSK-VKISGGGRCNVTNGHCAD-KMILA------GHYPRGHK 120 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k-~~~sG~g~~n~~~~~~~~-~~~~~------~~~~~~~~ 120 (481)
.++||+|||+|.|||+||++|++ . .+|+|+||..+++. ...+++|-+-.......+ ..... ..+. .+.
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~--~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~-~d~ 79 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGP--R-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYL-VDQ 79 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHh--C-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCC-CCH
Confidence 46899999999999999999997 4 89999998765432 222333322111100111 11111 1111 233
Q ss_pred hchhhHHhcCChHHHHHHHHhcCCcceeecCCee---------------------eecCCChHHHHHHHHHHHHhCCCEE
Q 011610 121 EFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------------------FPVSDSSSSVIDCLLTEAKHRGVVL 179 (481)
Q Consensus 121 ~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------------------~p~~~~a~~~~~~l~~~~~~~Gv~i 179 (481)
.+++.+.. ...+.++|+.++|+++....++.+ +........+++.|.+.+++.||++
T Consensus 80 ~~v~~~~~--~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~i 157 (583)
T PRK08205 80 DAAEIMAK--EAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGVEF 157 (583)
T ss_pred HHHHHHHH--HHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCCEE
Confidence 33333222 134668899999998864333221 1111235678899999999999999
Q ss_pred EcCceEEEEEecCC---CCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCC
Q 011610 180 QTGKVVTTASSDNA---GRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPV 242 (481)
Q Consensus 180 ~~~~~V~~i~~~~~---~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~ 242 (481)
++++.|++|..+++ +...+|...+..++....+.|+.||+|||+ +|+|+.+|.++|.++..+.
T Consensus 158 ~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me 237 (583)
T PRK08205 158 FNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDME 237 (583)
T ss_pred EeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcccCCCcCCCCCCCcHHHHHHHHcCCCccCcc
Confidence 99999999986531 244566553212222347899999999994 5778999999999986553
Q ss_pred CceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcc------cchhhHHHhHccCc
Q 011610 243 PSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILR------LSAWGARYLFSSCY 316 (481)
Q Consensus 243 p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~------lS~~~~~~~~~~~~ 316 (481)
. +++... .... .+.-+. ..++ ..+ ...+...|+.+..+|. |...+ +++.+..++.+...
T Consensus 238 ~--~q~~Pt--~~~~-~~~l~~-e~~r--g~g----~ilvn~~GeRF~~~y~---~~~~el~~rd~v~~ai~~e~~~~~g 302 (583)
T PRK08205 238 F--HQFHPT--GLAG-LGILIS-EAAR--GEG----GILRNAEGERFMERYA---PTIKDLAPRDIVARSMVLEVREGRG 302 (583)
T ss_pred c--eEEecc--eecC-CceEee-eccc--CCc----eEEECCCCCCCccccC---ccccccccHHHHHHHHHHHHHhcCC
Confidence 2 222210 0000 111110 0000 000 0112233444433332 11111 22222233322111
Q ss_pred ----eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHH
Q 011610 317 ----KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIA 391 (481)
Q Consensus 317 ----~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~ 391 (481)
...+.+|+. .++.+.+.+.+.. +..+++. .++++.
T Consensus 303 ~~~~~~~v~ld~~-~~~~~~l~~~~~~------------------------~~~~~~~~~g~d~~--------------- 342 (583)
T PRK08205 303 AGPNKDYVYLDLT-HLGEEVLEAKLPD------------------------ITEFARTYLGVDPV--------------- 342 (583)
T ss_pred CCCCCCEEEEecc-cCChHHHHHHcch------------------------HHHHHHHHcCCCcC---------------
Confidence 112444442 2233322221110 0011111 344332
Q ss_pred HHhccCeEEEcccCCCceeEEecCCCCCCCCCcccc--cccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHH
Q 011610 392 RLLKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGT 465 (481)
Q Consensus 392 ~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~ 465 (481)
.-++++... +..|.|||.++.- ..++ ..+.|||||+|||+. .++| +.||..|.+|+++|++||+
T Consensus 343 ----~~~i~v~p~-----~h~t~GGi~id~~-~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~ 412 (583)
T PRK08205 343 ----KEPVPVYPT-----AHYAMGGIPTTVD-GEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGI 412 (583)
T ss_pred ----CCceEEEee-----eeEECCCeeECCC-ceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHH
Confidence 113444433 5689999987742 2222 347899999999986 4777 7799999999999999999
Q ss_pred HHhHHhh
Q 011610 466 SIGKLSN 472 (481)
Q Consensus 466 ~aa~~~~ 472 (481)
+||++++
T Consensus 413 ~aa~~~~ 419 (583)
T PRK08205 413 AAAEYAR 419 (583)
T ss_pred HHHHHhh
Confidence 9998764
No 29
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.90 E-value=2.7e-21 Score=209.49 Aligned_cols=187 Identities=18% Similarity=0.151 Sum_probs=120.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCC--ceEEecCCc--eeeccCCCcchhHHhhccC-----CC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLS--KVKISGGGR--CNVTNGHCADKMILAGHYP-----RG 118 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~--k~~~sG~g~--~n~~~~~~~~~~~~~~~~~-----~~ 118 (481)
.++||+|||+|.|||+||+.|++ .|.+|+|||+. .+++ +..+.|+.. ++..+.. .++..++.... ..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae--~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~-Ds~~~~~~d~~~~g~~~~ 110 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGE--LGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDG-DSVYRLFYDTVKGGDFRA 110 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEecCCCCCcchhHHhhhchHhHhhccccC-CCHHHHHHHHHHhcCCCC
Confidence 56899999999999999999999 79999999964 5442 333333322 2221111 12222222111 11
Q ss_pred ChhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeeec--------------CCChHHHH----HHHHHHHHhCCCEEE
Q 011610 119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPV--------------SDSSSSVI----DCLLTEAKHRGVVLQ 180 (481)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~--------------~~~a~~~~----~~l~~~~~~~Gv~i~ 180 (481)
+..+++.+. .. ..+.++|+.++|+++.....+.+++. ......++ +.|.+.+++.||+|+
T Consensus 111 d~~lv~~l~-~~-s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~i~ 188 (640)
T PRK07573 111 REANVYRLA-EV-SVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMY 188 (640)
T ss_pred CHHHHHHHH-HH-HHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCEEE
Confidence 233333332 22 24788999999999865433322211 11223343 556667888999999
Q ss_pred cCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccC
Q 011610 181 TGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDP 241 (481)
Q Consensus 181 ~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~ 241 (481)
+++.|++|..++ +...+|.+.+..++....+.|+.||+|||+ +|+|+.+|.++|..+..+
T Consensus 189 ~~t~v~~Li~d~-g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~tt~~~~~tGdGi~mA~~aGA~l~~m 262 (640)
T PRK07573 189 TRTEMLDLVVVD-GRARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLSTNAMGSNATAIWRAHKKGAYFANP 262 (640)
T ss_pred eceEEEEEEEeC-CEEEEEEEEECCCCcEEEEECCEEEECCCCcccCCCCCCCCCCcCcHHHHHHHHcCCCccCc
Confidence 999999998765 455677665311222357899999999995 478899999999998654
No 30
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.90 E-value=1.2e-22 Score=211.61 Aligned_cols=366 Identities=16% Similarity=0.163 Sum_probs=197.6
Q ss_pred EECCchHHHHHHHHHhccCCCCcEEEEeCCCC---CCceEEecCCceeeccCC-----CcchhHHhhccC-----CCChh
Q 011610 55 VVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP---LSKVKISGGGRCNVTNGH-----CADKMILAGHYP-----RGHKE 121 (481)
Q Consensus 55 IIGgG~aGl~aA~~la~~~~g~~V~llE~~~~---g~k~~~sG~g~~n~~~~~-----~~~~~~~~~~~~-----~~~~~ 121 (481)
|||+|.+|++||++|++ .|.+|+||||... |.....+++.++...... ..+...+...+. ..+..
T Consensus 1 VVG~G~AGl~AA~~Aa~--~Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 78 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARR--AGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNES 78 (432)
T ss_pred CCcccHHHHHHHHHHHh--CCCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHH
Confidence 79999999999999999 7999999998643 322222222121110000 001111111111 11223
Q ss_pred chhhHHhcCChHHHHHHHHhcCCcceeecCC-------eeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC-C
Q 011610 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDG-------RVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN-A 193 (481)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g-------~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~ 193 (481)
+.+.+.. ...+.++|++++|+++.....+ ..||. .....+++.|.+.+++.|++|+++++|++|..++ +
T Consensus 79 l~~~~~~--~s~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~-~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~ 155 (432)
T TIGR02485 79 LSRLGIG--RGSRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLR-GGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFD 155 (432)
T ss_pred HHHHHHh--cchhHHHHHHhCCceeeecCCCCccccCceeeec-CCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCC
Confidence 3333221 2357789999999987653322 23332 3456789999999999999999999999998752 1
Q ss_pred CCeEEEEEeecccCceEEEEcCeEEEccCC---------------------------ChhHHHHHHHcCCCcccCCCcee
Q 011610 194 GRKFLLKVEKRTMNLVECIEADYLLIASGS---------------------------SQQGHRLAAQLGHSIVDPVPSLF 246 (481)
Q Consensus 194 ~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~---------------------------~g~g~~la~~~G~~i~~~~p~l~ 246 (481)
+..++|.+.. ....+.|+.||+|||+ +|++.+|+..+|..+........
T Consensus 156 g~v~gv~~~~----~~~~i~ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdgi~ma~~~Ga~~~~~~~~~~ 231 (432)
T TIGR02485 156 GAHDGPLTTV----GTHRITTQALVLAAGGLGANRDWLRKTHGPRADGIANRGTPYQLGGLLLQLLAEGAQAIGDPTDGH 231 (432)
T ss_pred CeEEEEEEcC----CcEEEEcCEEEEcCCCcccCHHHHHhhcCCccccccccCCCCcccHHHHHHHHcCccccCCCCcce
Confidence 2334555432 1357999999999994 34566677777766532111101
Q ss_pred EeeeCccccccc-cCce-----eccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhH-ccCceeE
Q 011610 247 TFKIADSQLTEL-SGVS-----FPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLF-SSCYKGM 319 (481)
Q Consensus 247 ~~~~~~~~~~~l-~G~~-----~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~-~~~~~~~ 319 (481)
+.... +..... .+.. .+. .+-+..+| +++..+.......++...+ ..+. ..+....
T Consensus 232 ~~~~~-~~~~~~~~~~~~~~~~~~~-~i~vn~~G----~RF~~E~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 294 (432)
T TIGR02485 232 VVAVD-ARAPFHDGGIVTRIDGMQL-GIVVGRDG----RRFADEGAIRGPERYAVWG-----------RQLASRPGQRAY 294 (432)
T ss_pred eEeec-CCCCcCCCceeeeeccccc-EEEECCCC----CEeeecCCccccchHHHHH-----------HHHHhCCCCeEE
Confidence 11011 000000 0110 010 11121111 2222221111101111111 1111 1112222
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHH----hc
Q 011610 320 LTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARL----LK 395 (481)
Q Consensus 320 ~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~----l~ 395 (481)
+..|- ...+. .+.... . .+-.+.+++|++++|+|++...+.+ +.+++++.. +.
T Consensus 295 ~i~D~------~~~~~--------~~~~~~-----~--~~~adtleeLA~~~gid~~~l~~tv--~~yN~~~~~g~~~i~ 351 (432)
T TIGR02485 295 ILLDA------DAAKR--------LPPMAC-----P--PLSADTLEELAGLLGIDPGGLAETL--DRPNAAPRTGARMIL 351 (432)
T ss_pred EEecc------hhhhh--------cccccC-----C--ceecCCHHHHHHHhCCCHHHHHHHH--HHHHHHHhcCCCCCC
Confidence 32221 10100 000000 0 1223457788888898877655444 556666532 34
Q ss_pred cCeEEEcccCCCceeEEecCCCCCCCCC-cccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHH
Q 011610 396 HCTLEVAGKGQFKDEFVTAGGVPLSEIS-LNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKL 470 (481)
Q Consensus 396 ~~~~~v~~~~~~~~a~vt~GGv~~~ei~-~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~ 470 (481)
+-||+.....+- ...|.||+.+++-- ....+.++|||||+|||+. .++| +.||.++.+|+++||+||++||+.
T Consensus 352 ~~PfYa~~~~p~--~~~T~GGl~id~~~~Vl~~~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 352 VVPFHAYPMIPG--ITFTRYGLVVDATARVRLNDAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCeEEEEeecc--cceeccceEECCCceEECCCCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 556666554332 46799999998622 2334688999999999975 4655 668999999999999999999876
Q ss_pred h
Q 011610 471 S 471 (481)
Q Consensus 471 ~ 471 (481)
+
T Consensus 430 ~ 430 (432)
T TIGR02485 430 A 430 (432)
T ss_pred h
Confidence 4
No 31
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.90 E-value=1.1e-21 Score=208.02 Aligned_cols=345 Identities=16% Similarity=0.145 Sum_probs=197.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC--CCceEEecCCceeeccCCCcchhHHhhcc-----CCCChh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP--LSKVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKE 121 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~--g~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~ 121 (481)
.++||+|||+|.|||+||+.++. .+|+||||... ++....++++-+..... ..++..+...+ ...+..
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa~----~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~-~ds~e~~~~d~~~~~~g~~d~~ 82 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLAP----RPVVVLSPAPLGEGASSAWAQGGIAAALGP-DDSPALHAADTLAAGAGLCDPA 82 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhCc----CCEEEEECCCCCCCcchHHhhhccccccCC-CCCHHHHHHHHHHhhCCCCCHH
Confidence 46899999999999999999974 59999998765 32233333333211111 11222222111 112334
Q ss_pred chhhHHhcCChHHHHHHHHhcCCcceeecCCeeee---------------cCCChHHHHHHHHHHHHhC-CCEEEcCceE
Q 011610 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP---------------VSDSSSSVIDCLLTEAKHR-GVVLQTGKVV 185 (481)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p---------------~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V 185 (481)
+++.+.. ...+.++|+.++|+++.....+.++. .......+++.|.+.+++. ||+++.++.|
T Consensus 83 ~v~~~~~--~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v 160 (513)
T PRK07512 83 VAALITA--EAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEA 160 (513)
T ss_pred HHHHHHH--HHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcCh
Confidence 4433322 23577899999999886544433221 0123567889999888775 8999999999
Q ss_pred EEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCcee-Eeee
Q 011610 186 TTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLF-TFKI 250 (481)
Q Consensus 186 ~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~-~~~~ 250 (481)
++|..++ +..++|.+.+ .++...+.|+.||+|||+ +|+|+.++.++|+.+..+.-..+ |...
T Consensus 161 ~~Li~~~-g~v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~~Pt~~ 237 (513)
T PRK07512 161 RRLLVDD-GAVAGVLAAT--AGGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEFVQFHPTAI 237 (513)
T ss_pred hheeecC-CEEEEEEEEe--CCeEEEEECCEEEEcCCCCcCCCCCCCCCCCCchHHHHHHHHcCCcEeCCcceEEEeeee
Confidence 9997654 4455666542 111246899999999996 47899999999999876543221 1111
Q ss_pred Ccccc-ccccCceeccEEEEEEecCccCCCCccceecCeEEEecc----ccchhhcccchhhHHHhHccCceeEEEEecC
Q 011610 251 ADSQL-TELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG----LSGPVILRLSAWGARYLFSSCYKGMLTVDFV 325 (481)
Q Consensus 251 ~~~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g----lsG~~il~lS~~~~~~~~~~~~~~~~~~d~~ 325 (481)
..+.. ..+-...++... .+ .+...|+.++.+|. +....+ +++.+..+..+ +. .+.+|.-
T Consensus 238 ~~~~~~~~l~~~~~rg~g-~~----------lvn~~G~RF~~~~~~~~e~~~rd~--v~~ai~~~~~~-g~--~v~ld~~ 301 (513)
T PRK07512 238 DIGRDPAPLATEALRGEG-AI----------LINEDGERFMADIHPGAELAPRDV--VARAVFAEIAA-GR--GAFLDAR 301 (513)
T ss_pred cCCCCCcceeehhhhCCc-eE----------EECCCCCChhhhcCCccccCcHHH--HHHHHHHHHhc-CC--EEEEecc
Confidence 10000 000000010000 01 11223444332221 111111 23333333322 22 2345543
Q ss_pred CCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccC
Q 011610 326 PDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKG 405 (481)
Q Consensus 326 p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~ 405 (481)
. ...+.+ .. . .| .+..+++..|+|+.+. +++|...
T Consensus 302 ~-~~~~~~----~~---~---------------~~--~i~~l~~~~gid~~~~-------------------~i~v~p~- 336 (513)
T PRK07512 302 A-ALGAHF----AT---R---------------FP--TVYAACRSAGIDPARQ-------------------PIPVAPA- 336 (513)
T ss_pred c-cchHHH----HH---H---------------hh--HHHHHHHHhCcCCCCC-------------------ceEEecc-
Confidence 2 111111 00 1 11 2345666688887641 2444333
Q ss_pred CCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHhhH
Q 011610 406 QFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSND 473 (481)
Q Consensus 406 ~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~~ 473 (481)
+..|.|||.+++- .+ ++|||||+|||+. .++| +.||..|.+|..+|++||++|++++.+
T Consensus 337 ----~h~t~GGi~vd~~----~~-t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~~ 399 (513)
T PRK07512 337 ----AHYHMGGIAVDAD----GR-SSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTPAA 399 (513)
T ss_pred ----cCEEcCCEEECCC----Cc-cccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5689999988642 22 6899999999986 4666 669999999999999999999887543
No 32
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.90 E-value=3.7e-21 Score=205.24 Aligned_cols=348 Identities=16% Similarity=0.138 Sum_probs=197.1
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCceeeccCCCcchhHHhhcc-----CCCC
Q 011610 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGHCADKMILAGHY-----PRGH 119 (481)
Q Consensus 46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~ 119 (481)
..+.++||+|||+|.||++||+.+++ |.+|+||||.... .....+++|-...... ..++..++... ...+
T Consensus 5 ~~~~e~DVlVVG~G~AGl~AAi~A~~---G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~-~ds~e~~~~d~~~~g~~~~d 80 (553)
T PRK07395 5 ILPSQFDVLVVGSGAAGLYAALCLPS---HLRVGLITKDTLKTSASDWAQGGIAAAIAP-DDSPKLHYEDTLKAGAGLCD 80 (553)
T ss_pred cccccCCEEEECccHHHHHHHHHhhc---CCCEEEEEccCCCCCchhhhcccceecccC-CCCHHHHHHHHHHhcCCCCC
Confidence 45567999999999999999999964 7899999987543 3222333332211111 11122222111 1123
Q ss_pred hhchhhHHhcCChHHHHHHHHhcCCcceeecC--------C----eee-ecCCChHHHHHHHHHHHHh-CCCEEEcCceE
Q 011610 120 KEFRGSFFSLHGPMDTMSWFSDHGVELKTEDD--------G----RVF-PVSDSSSSVIDCLLTEAKH-RGVVLQTGKVV 185 (481)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~--------g----~~~-p~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V 185 (481)
..+++.+... ..+.++|+.++|+++..... + +.+ +.......+++.|.+.+++ .|++|++++.|
T Consensus 81 ~~lv~~~~~~--s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v 158 (553)
T PRK07395 81 PEAVRFLVEQ--APEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALA 158 (553)
T ss_pred HHHHHHHHHH--HHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcCh
Confidence 4444443322 35778899999998864321 1 111 1122456788899888875 49999999999
Q ss_pred EEEEecCC-CCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeee
Q 011610 186 TTASSDNA-GRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKI 250 (481)
Q Consensus 186 ~~i~~~~~-~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~ 250 (481)
++|..+++ +...+|.+.. ++....+.|+.||+|||+ +|+++.++.++|+.+..+.. +++..
T Consensus 159 ~~Li~~~~~g~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~~~~~~tn~~~~tGdGi~mA~~aGA~l~~me~--~q~hp 234 (553)
T PRK07395 159 LSLWLEPETGRCQGISLLY--QGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEF--FQFHP 234 (553)
T ss_pred hhheecCCCCEEEEEEEEE--CCeEEEEEcCEEEEcCCCCccccCCccCccchhhHHHHHHHHcCCCccCCcc--eeEEe
Confidence 99987531 2345665542 222345899999999996 47889999999999866542 22221
Q ss_pred C---ccccc-cccCceeccEEEEEEecCccCCCCccceecCeEEEecc----ccchhhcccchhhHHHhHccCc---eeE
Q 011610 251 A---DSQLT-ELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG----LSGPVILRLSAWGARYLFSSCY---KGM 319 (481)
Q Consensus 251 ~---~~~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g----lsG~~il~lS~~~~~~~~~~~~---~~~ 319 (481)
. .+... .+-.-.++... .+. +...|+.++-+|. +....+ +++.+..++.+.+. ...
T Consensus 235 t~~~~~~~~~~l~~e~~rg~g-~il----------vn~~G~RF~~~y~~~~El~~rd~--v~~ai~~e~~~~~~~~~~~~ 301 (553)
T PRK07395 235 TALTKPGAPRFLISEAVRGEG-AHL----------VDAQGRRFAFDYHPAGELAPRDV--VSRAIFSHLQKTATDPATAH 301 (553)
T ss_pred eeecCCCCCceeeehhccCCc-EEE----------ECCCCCCCccccCcccccccHHH--HHHHHHHHHHhcCCCCCCce
Confidence 0 00000 00000010000 011 1223333322221 111111 23333334333221 124
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeE
Q 011610 320 LTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTL 399 (481)
Q Consensus 320 ~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~ 399 (481)
+.+|+-+ +..+.+.+ .+| .+..+++..|+|+.+ -|+
T Consensus 302 v~ld~~~-~~~~~~~~----------------------~~p--~i~~~~~~~giD~~~-------------------~~i 337 (553)
T PRK07395 302 VWLDLRP-IPAERIRR----------------------RFP--NIIRVCQKWGIDVFQ-------------------EPI 337 (553)
T ss_pred EEEeccc-cchHHHHH----------------------hhH--HHHHHHHHcCCCcCC-------------------CEe
Confidence 5565432 22222211 111 123455557887632 245
Q ss_pred EEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHH
Q 011610 400 EVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKL 470 (481)
Q Consensus 400 ~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~ 470 (481)
+|... +..|+|||.+++-- .+.+||||+|||+. -++| +.||..|..|..+|++||+++++.
T Consensus 338 ~v~P~-----~h~~~GGi~vd~~~-----~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~~~~ 402 (553)
T PRK07395 338 PVAPA-----AHYWMGGVVTDLNN-----QTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLELPI 402 (553)
T ss_pred EEecc-----eeecCCCeeECCCC-----cccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 56544 56899999876422 25799999999985 5776 679999999999999999998643
No 33
>PRK08275 putative oxidoreductase; Provisional
Probab=99.90 E-value=1.7e-21 Score=208.63 Aligned_cols=360 Identities=17% Similarity=0.140 Sum_probs=198.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC--ceEEecCCceeeccCCCcchhHHhhccC-----CCChh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS--KVKISGGGRCNVTNGHCADKMILAGHYP-----RGHKE 121 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~--k~~~sG~g~~n~~~~~~~~~~~~~~~~~-----~~~~~ 121 (481)
.++||+|||+|.||++||+.+++.++|.+|+||||....+ ......++.++.......++..+..... .....
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 5689999999999999999999843478999999875532 2112222222211111112222222111 11223
Q ss_pred chhhHHhcCChHHHHHHHHhcCCcceeecCCee-eec----------CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEe
Q 011610 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV-FPV----------SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASS 190 (481)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~-~p~----------~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~ 190 (481)
+++.+.. ...+.++|++++|+++.....+.+ .+. ......+.+.|.+.+++.|++|++++.|++|..
T Consensus 88 ~v~~~~~--~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~ 165 (554)
T PRK08275 88 AVYAYAE--HSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLT 165 (554)
T ss_pred HHHHHHH--hhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEE
Confidence 3322211 235788999999998875443322 110 113457888999999999999999999999987
Q ss_pred cCCCCeEEEEEeecccCceEEEEcCeEEEccCCC---------------------hhHHHHHHHcCCCcccCCCceeEee
Q 011610 191 DNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS---------------------QQGHRLAAQLGHSIVDPVPSLFTFK 249 (481)
Q Consensus 191 ~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~---------------------g~g~~la~~~G~~i~~~~p~l~~~~ 249 (481)
++++...+|...+..++....+.|+.||+|||+. |+|+.+|.++|..+..+. .+++.
T Consensus 166 ~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~p~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me--~~q~~ 243 (554)
T PRK08275 166 DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNAGDGYAMAYHAGAELANLE--CFQIN 243 (554)
T ss_pred cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccccCCCCcCcccccccCCCccccHHHHHHHcCCcccCce--EEEEe
Confidence 6313445665432112223468999999999962 568899999999886543 22221
Q ss_pred eCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCC
Q 011610 250 IADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLH 329 (481)
Q Consensus 250 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~ 329 (481)
. ......+.... .++- ..+ ...+...|+.++..+...+ .+++.+..++.+.+. .+.+|+- .+.
T Consensus 244 p---~~~~~~~~~~~--~~~~-~~g----~~lvn~~G~RF~~~~~~~~----~~~~ai~~e~~~g~g--~v~ld~~-~~~ 306 (554)
T PRK08275 244 P---LIKDYNGPACA--YVTG-PLG----GYTANAKGERFIECDYWSG----QMMWEFYQELQSGNG--PVFLKLD-HLA 306 (554)
T ss_pred c---eeecCCCCccc--eecc-ccC----cEEeCCCCCccccccCCch----HHHHHHHHHHHcCCC--cEEEECC-CCC
Confidence 1 11111111100 0000 000 1122334555544443333 245555555544333 3455553 233
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCce
Q 011610 330 IEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKD 409 (481)
Q Consensus 330 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~ 409 (481)
.+.+.. +....... ..|. ...+++..|+|+.+ -+++|.....+..
T Consensus 307 ~~~~~~-~~~~~~~~-------------~~p~--~~~~~~~~g~D~~~-------------------~~i~v~p~~~~~~ 351 (554)
T PRK08275 307 EETIQT-IETILHTN-------------ERPS--RGRFHEGRGTDYRQ-------------------QMVEMHISEIGFC 351 (554)
T ss_pred HHHHHH-HHhhhhhc-------------ccch--HHHHHHHcCCCccc-------------------CcccccCCCceee
Confidence 332221 11111000 0011 11233345676643 2344443434433
Q ss_pred eEEecCCCCCCCCCcccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhH
Q 011610 410 EFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSND 473 (481)
Q Consensus 410 a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~ 473 (481)
...++|||.+++- + .+.+||||+|||+.. +|+-.+..|..+|++||++|++++..
T Consensus 352 g~~~~Ggi~~d~~----~-~t~i~gl~a~Ge~~~----~~~~~~~~~~~~G~~a~~~~~~~~~~ 406 (554)
T PRK08275 352 SGHSASGVWVNEK----A-ETTVPGLYAAGDMAS----VPHNYMLGAFTYGWFAGENAAEYVAG 406 (554)
T ss_pred cccccCcEEECCC----C-ccCCCCEEECcccCC----chhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3356799987632 2 367999999998741 23444788999999999999988643
No 34
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.90 E-value=2.1e-21 Score=205.80 Aligned_cols=340 Identities=17% Similarity=0.178 Sum_probs=194.1
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC-CceEEecCCceeeccCCCcchhHHhhcc-----CCCChhch
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL-SKVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKEFR 123 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g-~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~~~ 123 (481)
++||+|||+|.||++||+++++ |.+|+||||.... .....++++- +.......++..++... ...+..++
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~---g~~V~lveK~~~~~g~s~~a~Ggi-~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v 78 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH---EYNVIIITKKTKRNSNSHLAQGGI-AAAVATYDSPNDHFEDTLVAGCHHNNERAV 78 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc---CCCEEEEeccCCCCCCchhcCccc-eecccCCCCHHHHHHHHHHhccCcCCHHHH
Confidence 6899999999999999999975 7899999987553 3222333332 21111111222222211 11233444
Q ss_pred hhHHhcCChHHHHHHHHhcCCcceeecCCee---------eec------CCChHHHHHHHHHHHHhCCCEEEcCceEEEE
Q 011610 124 GSFFSLHGPMDTMSWFSDHGVELKTEDDGRV---------FPV------SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTA 188 (481)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~---------~p~------~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i 188 (481)
+.+... ..+.++|+.++|+++....++.+ ++. ......+++.|.+.++ .||+|++++.|+++
T Consensus 79 ~~~~~~--s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~L 155 (510)
T PRK08071 79 RYLVEE--GPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDL 155 (510)
T ss_pred HHHHHH--HHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhhe
Confidence 333222 34677889999998864322321 111 1224568888888776 69999999999999
Q ss_pred EecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeee----
Q 011610 189 SSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKI---- 250 (481)
Q Consensus 189 ~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~---- 250 (481)
..++ +...+|.+.+ .++....+.|+.||+|||+ +|+++.++.++|+.+..+.- +++..
T Consensus 156 i~~~-g~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~~~~~~t~~~~~tGdG~~ma~~aGa~l~~me~--~q~~pt~~~ 231 (510)
T PRK08071 156 IIEN-GRCIGVLTKD-SEGKLKRYYADYVVLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEF--IQFHPTMLY 231 (510)
T ss_pred eecC-CEEEEEEEEE-CCCcEEEEEcCeEEEecCCCcccccCCCCCCCcccHHHHHHHHcCCceeCCcc--eeEeeeEec
Confidence 8765 3445666653 1222347899999999996 46789999999999865432 22211
Q ss_pred CccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc---ccchhhcccchhhHHHhHccCceeEEEEecCCC
Q 011610 251 ADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG---LSGPVILRLSAWGARYLFSSCYKGMLTVDFVPD 327 (481)
Q Consensus 251 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g---lsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~ 327 (481)
.+.....+-.-.++.... . +....|+.++..+. -..|- -.+++.+..+..+ +. .+.+|+-.
T Consensus 232 ~~~~~~~li~e~~rg~g~-~----------lvn~~G~RF~~~~~~~~e~~~r-d~v~~ai~~~~~~-~~--~v~ld~~~- 295 (510)
T PRK08071 232 ANGRCVGLVSEAVRGEGA-V----------LINEDGRRFMMGIHPLADLAPR-DVVARAIHEELLS-GE--KVYLNISS- 295 (510)
T ss_pred CCCccceeechhhcCCce-E----------EECCCCCCCccccCccccCCCH-HHHHHHHHHHHHc-CC--eEEEeccc-
Confidence 110000000000000000 1 12223443332221 01110 0133333333332 22 34454311
Q ss_pred CCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCC
Q 011610 328 LHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQF 407 (481)
Q Consensus 328 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~ 407 (481)
+.. +.. ..| .+..+++..|+|+.+. +++|..
T Consensus 296 -----~~~-~~~------------------~~~--~i~~~~~~~gid~~~~-------------------~i~v~p---- 326 (510)
T PRK08071 296 -----IQN-FEE------------------RFP--TISALCEKNGVDIETK-------------------RIPVVP---- 326 (510)
T ss_pred -----hHH-HHH------------------Hhh--HHHHHHHHhCcCCCCC-------------------ceeEeh----
Confidence 100 100 111 1345666678887631 233432
Q ss_pred ceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610 408 KDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS 471 (481)
Q Consensus 408 ~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~ 471 (481)
.+..|.|||.+|+- .+ +.|||||+|||+. .++| +.||..|..|..+|++||++|+++.
T Consensus 327 -~~h~~~GGi~vd~~----~~-t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 388 (510)
T PRK08071 327 -GAHFLMGGVKTNLD----GE-TSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTKA 388 (510)
T ss_pred -hheEEcCCEEECCC----Cc-ccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 36789999998742 22 6899999999987 4676 7799999999999999999998764
No 35
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.90 E-value=1.1e-21 Score=204.99 Aligned_cols=366 Identities=19% Similarity=0.199 Sum_probs=193.8
Q ss_pred eEEEECCchHHHHHHHHHhccCCC-CcEEEEeCC-CCCCceEEecCCceeeccCC------CcchhHHhhcc-----CCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKG-KPLSKVKISGGGRCNVTNGH------CADKMILAGHY-----PRG 118 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g-~~V~llE~~-~~g~k~~~sG~g~~n~~~~~------~~~~~~~~~~~-----~~~ 118 (481)
||||||+|++|++||+.|++ .| .+|+||||. ..+++...++++.|...+.. ..+...+...+ ...
T Consensus 1 DVvVVG~G~AGl~AA~~aa~--~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 78 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK--AGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGIN 78 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH--cCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 89999999999999999999 79 999999976 45556666666665443210 01111222111 112
Q ss_pred ChhchhhHHhcCChHHHHHHHHhcCCcceee----cCCeeeec-----C--CChHHHHHHHHHHHHhCCCEEEcCceEEE
Q 011610 119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTE----DDGRVFPV-----S--DSSSSVIDCLLTEAKHRGVVLQTGKVVTT 187 (481)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~----~~g~~~p~-----~--~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~ 187 (481)
+..+++.+. ... .+.++|+. .++.+... ..+..+|. . .....+.+.|.+.+++.|++|+++++|++
T Consensus 79 ~~~l~~~~~-~~~-~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~ 155 (439)
T TIGR01813 79 DPELVRILA-EES-ADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVED 155 (439)
T ss_pred CHHHHHHHH-hcc-HHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeE
Confidence 233433322 222 35678888 55544321 11222221 1 24567889999999999999999999999
Q ss_pred EEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC--------------------------ChhHHHHHHHcCCCcccC
Q 011610 188 ASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------------------SQQGHRLAAQLGHSIVDP 241 (481)
Q Consensus 188 i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------------------~g~g~~la~~~G~~i~~~ 241 (481)
|..++++..++|.+.. ..+....+.++.||+|||+ +|+++.|+.++|..+..+
T Consensus 156 l~~~~~g~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~~~n~~m~~~~~p~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~~ 234 (439)
T TIGR01813 156 LIQDDQGTVVGVVVKG-KGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKGLGSTNQPGATGDGLLMAEKIGAALVDM 234 (439)
T ss_pred eEECCCCcEEEEEEEe-CCCeEEEEecceEEEecCCCCCCHHHHHHhCCCcCCCCcCCCCCCchHHHHHHHHcCCCccCC
Confidence 9986413445566543 1122235789999999994 356788899999887654
Q ss_pred CCcee-EeeeCcc-ccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHc-cCcee
Q 011610 242 VPSLF-TFKIADS-QLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFS-SCYKG 318 (481)
Q Consensus 242 ~p~l~-~~~~~~~-~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~-~~~~~ 318 (481)
..... +....+. ........+... .+-+..+| +++.. | .. .... ++ +.+.. .+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~vn~~G----~RF~~---E-----~~--~~~~--~~----~~~~~~~~~~~ 293 (439)
T TIGR01813 235 DYIQAHPTASPDEGGFLISEAVRGYG-AILVNKTG----ERFMN---E-----LA--TRDT--VS----DAILAQPGKSA 293 (439)
T ss_pred chhheecccccCCcceeehhhcccCc-EEEECCCC----CCccc---c-----CC--cHHH--HH----HHHHhCCCCce
Confidence 32211 1111110 000000011000 12222222 22222 1 10 0000 01 11111 11112
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHH-----
Q 011610 319 MLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARL----- 393 (481)
Q Consensus 319 ~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~----- 393 (481)
.+..| ...+ ..... ... ............+++|+++.+++++...+.+ +.++.++..
T Consensus 294 ~~i~d------~~~~-~~~~~-~~~--------~~~~g~~~~adtleeLa~~~g~~~~~l~~tv--~~yN~~~~~g~D~~ 355 (439)
T TIGR01813 294 YLIFD------DDVY-KKAEM-VDN--------YYRLGVAYKGDSLEELAKQFGIPAAALKKTV--KDYNEYVASGKDTP 355 (439)
T ss_pred EEEEC------HHHH-Hhhhh-HHH--------HHhcCcEEEeCCHHHHHHHhCCCHHHHHHHH--HHHHHHHhcCCCcc
Confidence 22222 1111 00000 000 0000001223345566666666655433332 333333321
Q ss_pred ----------hccCeEEEcccCCCceeEEecCCCCCCCCCcccc--cccCCCCeEEEEEEe-eccc--CcchHHHHHHHH
Q 011610 394 ----------LKHCTLEVAGKGQFKDEFVTAGGVPLSEISLNTM--ESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWS 458 (481)
Q Consensus 394 ----------l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~--esk~~~gLy~~GE~l-dv~g--~~GGynl~~A~~ 458 (481)
+.+-||+.....+. ...|.||+.+++-- +.+ +.++|||||+|||+. .++| +.+|.++.+|++
T Consensus 356 f~r~~~~~~~i~~~Pfya~~~~~~--~~~t~GGl~~d~~~-~vl~~~g~~IpGLyAaG~~~gg~~g~~~~~G~~~~~~~~ 432 (439)
T TIGR01813 356 FGRPMDMPDDLSKSPYYAIKVTPG--VHHTMGGVKINTKA-EVLDAQGKPIPGLFAAGEVTGGVHGANRLGGNAIADCIV 432 (439)
T ss_pred cCCCCCCCCCCCCCCEEEEEEEcC--ccccccCeEECCCC-eEECCCCCEecccEEeeecccccCCCCCCchhhhhhhhh
Confidence 33556665444443 56899999998632 222 357899999999976 5555 568999999999
Q ss_pred HHHHHHH
Q 011610 459 GGYIAGT 465 (481)
Q Consensus 459 sG~~AG~ 465 (481)
+||+||+
T Consensus 433 ~GriAg~ 439 (439)
T TIGR01813 433 FGRIAGE 439 (439)
T ss_pred hhHhhcC
Confidence 9999984
No 36
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.89 E-value=1.1e-20 Score=203.97 Aligned_cols=199 Identities=17% Similarity=0.164 Sum_probs=128.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC-ceEEecCCceeeccCCCcchhHHhhcc-----CCCChhc
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKEF 122 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~-k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~~ 122 (481)
.++||+|||+|+||++||+.+++..+|.+|+||||....+ .....|.+.+|.......++..+.... ...+..+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 4689999999999999999999821289999999875543 222222212221111111222222111 1122334
Q ss_pred hhhHHhcCChHHHHHHHHhcCCcceeecCCeeeecC-----CChHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCe
Q 011610 123 RGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVS-----DSSSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRK 196 (481)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-----~~a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~ 196 (481)
++.+... ..+.++|+.++|+++.....+.+++.. .....+.+.|.+.+++.+ |++++++.|+++..++ +..
T Consensus 90 v~~~~~~--s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~-g~v 166 (608)
T PRK06854 90 VYDIARH--VDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDD-NRI 166 (608)
T ss_pred HHHHHHh--HHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC-CEE
Confidence 3333222 357889999999988765555555432 235577888888888876 9999999999998765 444
Q ss_pred EEEEEeecccCceEEEEcCeEEEccCC-----------------------ChhHHHHHHHcCCCcccCCCceeEeee
Q 011610 197 FLLKVEKRTMNLVECIEADYLLIASGS-----------------------SQQGHRLAAQLGHSIVDPVPSLFTFKI 250 (481)
Q Consensus 197 ~~V~~~~~~~~~~~~i~ad~VIlAtG~-----------------------~g~g~~la~~~G~~i~~~~p~l~~~~~ 250 (481)
++|...+...+....+.|+.||+|||+ +|+|+.++.++|..+..+.+.++|..+
T Consensus 167 ~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~qf~p~~~ 243 (608)
T PRK06854 167 AGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGRGRMWYPPFNTGSGYAMGIRAGAEMTTFENRFIPLRF 243 (608)
T ss_pred EEEEEEEccCCcEEEEECCEEEECCCchhhccCCCCcccccccccCCCCCccHHHHHHHHhCCcccCCcceEecccc
Confidence 555432211222347999999999994 267899999999999888776666554
No 37
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.89 E-value=6.7e-21 Score=203.24 Aligned_cols=352 Identities=16% Similarity=0.167 Sum_probs=194.9
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCceEEecCCceeeccCCCcchhHHhhcc-----CCCChh
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNGHCADKMILAGHY-----PRGHKE 121 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~~~~~~~~~~~~~~~~-----~~~~~~ 121 (481)
+.++||+|||+|.||++||+.|++ . .+|+||||... ++....++++-+..... ..++..+.... ...+..
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~--~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~-~ds~e~~~~d~~~~g~~~~d~~ 81 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAE--H-RRVAVLSKGPLSEGSTFYAQGGIAAVLDE-TDSIESHVEDTLIAGAGLCDED 81 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHH--C-CCEEEEeccCCCCCChhhccCCeeeccCC-CccHHHHHHHHHHHccCCCCHH
Confidence 457899999999999999999998 4 79999998754 33333344443222211 11122222211 112333
Q ss_pred chhhHHhcCChHHHHHHHHhcCCcceeecC--C--e--------------eeecCCChHHHHHHHHHHHHhC-CCEEEcC
Q 011610 122 FRGSFFSLHGPMDTMSWFSDHGVELKTEDD--G--R--------------VFPVSDSSSSVIDCLLTEAKHR-GVVLQTG 182 (481)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~--g--~--------------~~p~~~~a~~~~~~l~~~~~~~-Gv~i~~~ 182 (481)
+++.+.. ...+.++|+.++|+++..... + . +++.......+...|.+.+.+. ||+|+.+
T Consensus 82 ~v~~~~~--~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~ 159 (536)
T PRK09077 82 AVRFIAE--NAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLER 159 (536)
T ss_pred HHHHHHH--HHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 4433322 234677899999998864321 1 1 1111123457778888887765 8999999
Q ss_pred ceEEEEEecC-----CCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCC
Q 011610 183 KVVTTASSDN-----AGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVP 243 (481)
Q Consensus 183 ~~V~~i~~~~-----~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p 243 (481)
+.|+++..++ ++...+|...+..++....+.|+.||+|||+ +|+|+.++.++|..+..+..
T Consensus 160 ~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~ 239 (536)
T PRK09077 160 HNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRVANMEF 239 (536)
T ss_pred EEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCCCCcCCCCCCcHHHHHHHHcCCcCcCccc
Confidence 9999998642 0244566654312233457899999999994 57889999999999865432
Q ss_pred ceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEecc----ccchhhcccchhhHHHhHccCceeE
Q 011610 244 SLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG----LSGPVILRLSAWGARYLFSSCYKGM 319 (481)
Q Consensus 244 ~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g----lsG~~il~lS~~~~~~~~~~~~~~~ 319 (481)
+++...--......+.-+.. .++ ..+ ..++...|+.++.+|. +....+ +++.+..++...+. ..
T Consensus 240 --~q~~pt~~~~~~~~~~l~~e-~~r--g~g----~~lvn~~G~RF~~~~~~~~el~~rd~--v~~ai~~~~~~~g~-~~ 307 (536)
T PRK09077 240 --NQFHPTCLYHPQARSFLITE-ALR--GEG----AYLKLPDGTRFMPDFDERAELAPRDI--VARAIDHEMKRLGA-DC 307 (536)
T ss_pred --eeEecceecCCCCCceeecH-HHc--CCC----CEEECCCCCCcccccCcccccCchhH--HHHHHHHHHHhcCC-Ce
Confidence 22221100000000100000 000 000 0112223444333221 111111 23333333332222 23
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeE
Q 011610 320 LTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTL 399 (481)
Q Consensus 320 ~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~ 399 (481)
+++|+-+. ..+. +.. .+| .+. ..+...|+++.+ -|+
T Consensus 308 v~ld~~~~-~~~~----~~~---~~~----------------~~~-~~~~~~g~d~~~-------------------~pi 343 (536)
T PRK09077 308 VYLDISHK-PADF----IRQ---HFP----------------TIY-ERCLELGIDITK-------------------EPI 343 (536)
T ss_pred EEEECCCC-cHHH----HHH---HCh----------------HHH-HHHHHhCcCCCC-------------------Cce
Confidence 55565421 2221 111 111 111 123335666532 234
Q ss_pred EEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610 400 EVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLS 471 (481)
Q Consensus 400 ~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~ 471 (481)
+|... +..|.|||.+++- . .+.|||||+|||+. .++| +.||..|..|+.+|++||++|++++
T Consensus 344 ~v~p~-----~h~t~GGi~vd~~----~-~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 344 PVVPA-----AHYTCGGVMVDLH----G-RTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred eeeee-----eeEecCCeeECCC----C-ccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 44332 6789999987632 2 25899999999986 5776 6699999999999999999998875
No 38
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.89 E-value=2.6e-21 Score=205.45 Aligned_cols=389 Identities=16% Similarity=0.147 Sum_probs=193.8
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeec-cC-----CCcc-hhHHhhccCC
Q 011610 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVT-NG-----HCAD-KMILAGHYPR 117 (481)
Q Consensus 46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~-~~-----~~~~-~~~~~~~~~~ 117 (481)
.++.++||+|||+| +|++||++|++ .|++|+||||.. .|.....++++..... +. ...+ ...+...|..
T Consensus 3 ~~d~~~DVvVVG~G-aGl~aA~~aa~--~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~ 79 (513)
T PRK12837 3 AWDEEVDVLVAGSG-GGVAGAYTAAR--EGLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHA 79 (513)
T ss_pred CCCCccCEEEECch-HHHHHHHHHHH--CCCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHH
Confidence 35568999999999 99999999999 799999999764 4554444443211111 10 0011 1111111111
Q ss_pred -----CChhchhhHHhcCChHHHHHHHHh-cCCcceeec-------------CC--eeeecC------------------
Q 011610 118 -----GHKEFRGSFFSLHGPMDTMSWFSD-HGVELKTED-------------DG--RVFPVS------------------ 158 (481)
Q Consensus 118 -----~~~~~~~~~l~~~~~~~~~~~~~~-~Gi~~~~~~-------------~g--~~~p~~------------------ 158 (481)
.+..+.+.+.. ...+.++|+++ .|+++.... .+ ..+|..
T Consensus 80 ~~~~~~~~~l~~~~~~--~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (513)
T PRK12837 80 VVGDRTPRDLQETYVR--GGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLD 157 (513)
T ss_pred HhcccCCHHHHHHHHH--HHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccc
Confidence 12223322221 23467789876 587764311 00 111110
Q ss_pred ------------CChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcC-eEEEccCC-
Q 011610 159 ------------DSSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEAD-YLLIASGS- 223 (481)
Q Consensus 159 ------------~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad-~VIlAtG~- 223 (481)
.....++..|.+.+.+ .|++|+++++|++|..++ +...+|.... .+....+.|+ .||+|||+
T Consensus 158 ~~~~~~~~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~-g~v~Gv~~~~--~g~~~~i~A~k~VIlAtGG~ 234 (513)
T PRK12837 158 TERLGAPPPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVED-GRVVGAVVER--GGERRRVRARRGVLLAAGGF 234 (513)
T ss_pred hhhhccCCCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC-CEEEEEEEEE--CCcEEEEEeCceEEEeCCCc
Confidence 0123466677776655 499999999999998765 4555666542 2334578996 79999995
Q ss_pred -------------------------ChhHHHHHHHcCCCcccCCCce-eEeeeCccccccccCceeccEEEEEEecCccC
Q 011610 224 -------------------------SQQGHRLAAQLGHSIVDPVPSL-FTFKIADSQLTELSGVSFPKVVAKLKLENVQR 277 (481)
Q Consensus 224 -------------------------~g~g~~la~~~G~~i~~~~p~l-~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 277 (481)
+|+|..|+.++|..+..+.-.. .+....+..... .+.... -.+-+..+|
T Consensus 235 ~~n~~m~~~~~~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~~~~~p~~~~~~~~~~-~~~~~~-~~i~Vn~~G--- 309 (513)
T PRK12837 235 EQNDDMRARYGVPGSARDTMGGPGNTGLAHQAAIAVGADTDLMDQAWWSPGLTHPDGRSA-FALWFT-GGIFVDQHG--- 309 (513)
T ss_pred cCCHHHHHHhccccccCCCCCCCCCCcHHHHHHHHcCCCccccccccccceeecCCCcce-eccccC-ceEEECCCC---
Confidence 3567788888887764332111 110000000000 011101 112122222
Q ss_pred CCCccceecCeEEEeccccchhhcccchhhHHHhHccCc--eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCC
Q 011610 278 SSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCY--KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPP 355 (481)
Q Consensus 278 ~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~--~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 355 (481)
+++.. |... + .. +++.+......... ...+..|- + ..+................+...
T Consensus 310 -kRF~n---E~~~--~-----~~--~~~a~~~~~~~~~~~~~~~~I~D~------~-~~~~~~~~~~~~~~~~~~~~~~~ 369 (513)
T PRK12837 310 -ERFVN---ESAP--Y-----DR--LGRAVIAEMDSGGMTLPFWMIYDD------R-EGEVPPVKATNVSMVETAQYVAA 369 (513)
T ss_pred -CCccc---CCCc--H-----hH--HHHHHHhhcccCCCCcceEEEECc------h-hhhccCccccCCCCcCcHHHhhc
Confidence 22221 2110 0 00 11111111100100 12222221 0 00000000000000000000111
Q ss_pred ccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccC------------------eEEEcccCCCcee------E
Q 011610 356 EFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHC------------------TLEVAGKGQFKDE------F 411 (481)
Q Consensus 356 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~------------------~~~v~~~~~~~~a------~ 411 (481)
+..+....+++|+++++++++...+.+ +.+++++..=++- .+....+.||--. .
T Consensus 370 g~~~kaDTleELA~k~gid~~~L~~Tv--~~yN~~~~~g~D~dFgr~~~~~~~~~~~~~~~l~~i~~~PfYA~~~~p~~~ 447 (513)
T PRK12837 370 GLWRTADTLEELAAKIGVPADALTATV--ARFNGFAAAGVDEDFGRGDEAYDRAFSGGASPLVPIDTPPFHAAAFGVSDL 447 (513)
T ss_pred CCeeecCCHHHHHHHcCCCHHHHHHHH--HHHHHHHhcCCCccCCCCcchhhccccCCcccceecccCCeEEEEeccccc
Confidence 001123456777888888776655544 4555555332221 1122224444333 4
Q ss_pred EecCCCCCCCC-CcccccccCCCCeEEEEEEe-eccc--Cc-chHHHHHHHHHHHHHHHHHhH
Q 011610 412 VTAGGVPLSEI-SLNTMESKIHPRLFFAGEVL-NVDG--VT-GGFNFQNAWSGGYIAGTSIGK 469 (481)
Q Consensus 412 vt~GGv~~~ei-~~~t~esk~~~gLy~~GE~l-dv~g--~~-GGynl~~A~~sG~~AG~~aa~ 469 (481)
.|.||+.+++- ...+-+.++|||||+|||+. .+.| +. +|.++..|+++||+||++|+.
T Consensus 448 ~T~GGl~in~~~qVl~~~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 448 GTKGGLRTDTAARVLDTDGRPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred eeCCCceECCCceEECCCCCEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 48999998862 22333578999999999975 5655 33 488899999999999999964
No 39
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.88 E-value=9.4e-22 Score=210.41 Aligned_cols=187 Identities=24% Similarity=0.246 Sum_probs=116.9
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeecc----C-CCcc-hhHH---hhccC
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTN----G-HCAD-KMIL---AGHYP 116 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~----~-~~~~-~~~~---~~~~~ 116 (481)
++.++||+|||+|.+|++||+.+++ .|.+|+|||+. ..|.....++++.+...+ . ...+ ...+ ...+.
T Consensus 3 ~d~~~DvvIiG~G~aGl~aA~~~a~--~G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~ 80 (557)
T PRK12844 3 WDETYDVVVVGSGGGGMCAALAAAD--SGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVV 80 (557)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999 79999999976 445554455544321111 0 0001 1111 11111
Q ss_pred C-----CChhchhhHHhcCChHHHHHHHHhcCCcceeec----------CC----ee-eec-------------------
Q 011610 117 R-----GHKEFRGSFFSLHGPMDTMSWFSDHGVELKTED----------DG----RV-FPV------------------- 157 (481)
Q Consensus 117 ~-----~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~----------~g----~~-~p~------------------- 157 (481)
. ....+++.++. ...+.++|++++|+++.... .+ +. +|.
T Consensus 81 ~~~~~~~~~~~~~~~~~--~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 158 (557)
T PRK12844 81 GDQGPASSPERREAYLR--AGPAMVSFLEHQGMRFARCEGWSDYYPDLPGGEARGRSLEAKPFDARKLGPWFDRLNPPMA 158 (557)
T ss_pred cccccCCCHHHHHHHHh--hhHHHHHHHHhcCceeEeCCCCCCCCCCCCCCcCCCceecCCCCChhHhhHHHHhhcCccc
Confidence 1 12233333222 33578899999998875321 11 10 000
Q ss_pred ---------------------------------------------CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC
Q 011610 158 ---------------------------------------------SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN 192 (481)
Q Consensus 158 ---------------------------------------------~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~ 192 (481)
......++..|.+.+++.|++|+++++|++|..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~ 238 (557)
T PRK12844 159 TPPGTVVMTDEYKWLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAALAAGVPLWTNTPLTELIVED 238 (557)
T ss_pred ccccccccHHHHHHHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC
Confidence 00124566778888999999999999999999765
Q ss_pred CCCeEEEEEeecccCceEEEEcC-eEEEccCC---------------------------ChhHHHHHHHcCCCccc
Q 011610 193 AGRKFLLKVEKRTMNLVECIEAD-YLLIASGS---------------------------SQQGHRLAAQLGHSIVD 240 (481)
Q Consensus 193 ~~~~~~V~~~~~~~~~~~~i~ad-~VIlAtG~---------------------------~g~g~~la~~~G~~i~~ 240 (481)
+...+|.... .++...+.|+ .||+|||+ +|++..++.++|..+..
T Consensus 239 -g~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~~N~em~~~~~p~~~~~~~~~~~~~~tGDGi~ma~~~GA~l~~ 311 (557)
T PRK12844 239 -GRVVGVVVVR--DGREVLIRARRGVLLASGGFGHNAEMRKRYQPQPNSGDWTNANPGDTGEVIEAAMRLGAALDL 311 (557)
T ss_pred -CEEEEEEEEE--CCeEEEEEecceEEEecCCccCCHHHHHHhcCCcccCcccCCCCCCCHHHHHHHHHcCCCccc
Confidence 4556666642 2334568885 79999994 35677788888877643
No 40
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.88 E-value=9.1e-21 Score=199.06 Aligned_cols=335 Identities=18% Similarity=0.215 Sum_probs=188.1
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhc-----cCCCChhchh
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGH-----YPRGHKEFRG 124 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~-----~~~~~~~~~~ 124 (481)
++||+|||+|+|||+||+.|++ .|.+|+||||.........+.+|.+ .......++..+... ....++.+++
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae--~G~~V~liek~~~~~~s~~a~ggi~-~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~ 77 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAK--KGFDVTIIGPGIKKSNSYLAQAGIA-FPILEGDSIRAHVLDTIRAGKYINDEEVVW 77 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcHHHcCCcc-cccCCCCcHHHHHHHHHHHhcCCCCHHHHH
Confidence 3799999999999999999999 7999999997643321111122221 111011111111111 1112334443
Q ss_pred hHHhcCChHHHHHHHHhcCCcceee--cCCeeeec-----CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeE
Q 011610 125 SFFSLHGPMDTMSWFSDHGVELKTE--DDGRVFPV-----SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKF 197 (481)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~Gi~~~~~--~~g~~~p~-----~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~ 197 (481)
.+.. ...+.++|+.++|+++... ..+..||. ......+.+.|.+.+++.|++++.+ .++.+..++ +..+
T Consensus 78 ~~~~--~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g~v~ 153 (466)
T PRK08401 78 NVIS--KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKN-GKAY 153 (466)
T ss_pred HHHH--HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-CEEE
Confidence 3322 2356788999999988632 23444442 2345678999999999999999876 788887654 3445
Q ss_pred EEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCccccccccCcee
Q 011610 198 LLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSF 263 (481)
Q Consensus 198 ~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~ 263 (481)
+|.+. +..+.++.||+|||+ ++++..++.++|..+..+. .+++.... ....-.+.-+
T Consensus 154 Gv~~~------g~~i~a~~VVLATGG~~~~~~~~~~~~~~tGdg~~~a~~aGA~l~~me--~~q~~p~~-~~~~~~~~l~ 224 (466)
T PRK08401 154 GVFLD------GELLKFDATVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLE--FVQFHPTG-FIGKRGTYLI 224 (466)
T ss_pred EEEEC------CEEEEeCeEEECCCcCcCCCCCcCCCCCCCcHHHHHHHHcCCcccCce--eeEEeccc-ccCCCCCeEE
Confidence 66664 457999999999995 3567788888898865443 22322110 0000000000
Q ss_pred ccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecCCCCCHHHHHHHHHHHHHh
Q 011610 264 PKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFVPDLHIEDMQSILSQHKIR 343 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~~~l~~~l~~~~~~ 343 (481)
. ..++ ..+ ..++...|+.++.+. ....+ +++.+..+... +. .+.+|.-. .+++ .+ .
T Consensus 225 ~-e~~r--~~g----~ilvN~~G~RF~~E~--~~rd~--v~~ai~~~~~~-~~--~v~ld~~~---~~~~----~~---~ 280 (466)
T PRK08401 225 S-EAVR--GAG----AKLVTGDGERFVNEL--ETRDI--VARAIYRKMQE-GK--GVFLDATG---IEDF----KR---R 280 (466)
T ss_pred e-eecc--cCc----eEEECCCCCChhccc--ccHHH--HHHHHHHHHhc-CC--EEEEeCcC---HHHH----HH---H
Confidence 0 0000 000 011222344333221 11111 23333333222 12 34455421 1111 11 1
Q ss_pred chhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCCCCC
Q 011610 344 FAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLSEIS 423 (481)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~ 423 (481)
+|. +. ..+...|+|+.+ .++++... +..|.|||.+++-
T Consensus 281 ---------------~~~-~~-~~~~~~G~D~~~-------------------~~i~v~p~-----~h~t~GGi~vd~~- 318 (466)
T PRK08401 281 ---------------FPQ-IY-AFLRKEGIDPSR-------------------DLIPVTPI-----AHYTIGGISVDTF- 318 (466)
T ss_pred ---------------hHH-HH-HHHHHcCCCcCC-------------------cccccccc-----eeecCCCEEECCC-
Confidence 111 11 223346777642 23444333 5789999987642
Q ss_pred cccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHH
Q 011610 424 LNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKL 470 (481)
Q Consensus 424 ~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~ 470 (481)
++ +.|||||+|||+. .++| +.||..|..|..+|++||++|++.
T Consensus 319 ---~~-t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 319 ---YR-TGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred ---Cc-ccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 23 6899999999986 5776 679999999999999999999764
No 41
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.88 E-value=1.5e-20 Score=198.85 Aligned_cols=360 Identities=20% Similarity=0.256 Sum_probs=213.3
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC--ceEEecCCceeeccCCC---cchhHHhhccC-----
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS--KVKISGGGRCNVTNGHC---ADKMILAGHYP----- 116 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~--k~~~sG~g~~n~~~~~~---~~~~~~~~~~~----- 116 (481)
...++||+|||||.|||+||+.+++ .|.+|+|+||..+.+ +..+.|+..+.+.+... .+++.+...-.
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~--~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~ 80 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAE--AGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDG 80 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHh--cCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCC
Confidence 3467999999999999999999999 789999999875543 33333433333333221 01212221111
Q ss_pred CCChhchhhHHhcCChHHHHHHHHhcCCcceeecCCeee--------------ecCCChHHHHHHHHHHHHh-CCCEEEc
Q 011610 117 RGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVF--------------PVSDSSSSVIDCLLTEAKH-RGVVLQT 181 (481)
Q Consensus 117 ~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~--------------p~~~~a~~~~~~l~~~~~~-~Gv~i~~ 181 (481)
..+.+.+.. +.. ...+.+.+++.+|+++.....|.++ ....-...++..|.+.+.+ .+++++.
T Consensus 81 l~dqd~i~~-~~~-~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~ 158 (562)
T COG1053 81 LGDQDAVEA-FAD-EAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFD 158 (562)
T ss_pred cCCHHHHHH-HHH-hhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhh
Confidence 112222222 122 2346778999999988766555332 2223356788888888887 6778999
Q ss_pred CceEEEEEecCCCC-eEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCcee
Q 011610 182 GKVVTTASSDNAGR-KFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLF 246 (481)
Q Consensus 182 ~~~V~~i~~~~~~~-~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~ 246 (481)
+..+.++..++ ++ ..++..-+..++.-..++++.||+|||+ +++|+.|+.++|..+..+.. +
T Consensus 159 ~~~~~~l~~~~-~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~aGa~l~dme~--~ 235 (562)
T COG1053 159 EYFVLDLLVDD-GGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDMEF--V 235 (562)
T ss_pred hhhhhhheecC-CCcEEEEEEEEecCCcEEEEecCcEEEccCCceEEEeccCCccccCCcHHHHHHhcCCcccCCCc--c
Confidence 99999998775 34 4566554433444567889999999995 46899999999998655422 2
Q ss_pred EeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccc------hhhHHHhHccCc----
Q 011610 247 TFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLS------AWGARYLFSSCY---- 316 (481)
Q Consensus 247 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS------~~~~~~~~~~~~---- 316 (481)
++....- .. +|+=+. ..++ ..| ....+..|+.....++ ..|..+++. +.+..++.+.+.
T Consensus 236 Q~hpt~~--~~-~g~l~~-e~~R--geG----G~l~N~~Gerf~e~~~-~~~~~~~l~~rd~~~r~~~~ei~~G~g~~~~ 304 (562)
T COG1053 236 QFHPTGL--VG-SGILIT-EAVR--GEG----GILLNKDGERFMERYG-YAPKYKELAPRDVVSRAILMEIREGRGVDGP 304 (562)
T ss_pred cccccee--cC-CceEEe-eecc--cCC----CeEecCCcceeecccc-ccccccccCCcchHHHHHHHHHhcCCCcccC
Confidence 2222110 01 232111 1111 011 1233445777776654 344444443 222333333322
Q ss_pred -eeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhc
Q 011610 317 -KGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLK 395 (481)
Q Consensus 317 -~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~ 395 (481)
...+.+|+-+ +..+++.+. +|. .........|+|+.+
T Consensus 305 ~~~~v~ldl~h-lg~~~~~~~----------------------l~~-~~~~~~~~~g~D~~~------------------ 342 (562)
T COG1053 305 GGDYVYLDLRH-LGKEELEER----------------------LPG-IRELAKKFAGIDPVK------------------ 342 (562)
T ss_pred CCceEEEEhhh-cChHHHHhc----------------------Cch-HHHHHHhhcCCCccc------------------
Confidence 1355566654 222212111 111 122233335676653
Q ss_pred cCeEEEcccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEeecc--c--CcchHHHHHHHHHHHHHHHHHhHHh
Q 011610 396 HCTLEVAGKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVD--G--VTGGFNFQNAWSGGYIAGTSIGKLS 471 (481)
Q Consensus 396 ~~~~~v~~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~ldv~--g--~~GGynl~~A~~sG~~AG~~aa~~~ 471 (481)
-|++|..+ ..-|+|||+++. .. . -+.+||||+|||+..+. | ..||..|..++.+|++||..|++++
T Consensus 343 -~p~~v~p~-----~Hy~mGGi~~~~--~~-~-~t~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~Ag~~aa~y~ 412 (562)
T COG1053 343 -EPIPVRPT-----VHYTMGGIPTNT--GR-V-ETKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAAAEYA 412 (562)
T ss_pred -ceeEeccc-----ceeccCCEeecc--cc-c-ccCCCCeEECceecccccCCcccCCccccHHHHHHHHHHHHHHHHHH
Confidence 22334333 557899999986 11 1 23399999999999754 4 7899899999999999999999998
Q ss_pred hHhhh
Q 011610 472 NDATL 476 (481)
Q Consensus 472 ~~~~~ 476 (481)
+++-+
T Consensus 413 ~~~~~ 417 (562)
T COG1053 413 KEKSG 417 (562)
T ss_pred HhccC
Confidence 76543
No 42
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.87 E-value=5.1e-20 Score=197.46 Aligned_cols=198 Identities=17% Similarity=0.137 Sum_probs=128.0
Q ss_pred eEEEECCchHHHHHHHHHh----ccCCCCcEEEEeCCCCCCceEEecCC-ceeec-cC--CCcchhHHhhc-----cCCC
Q 011610 52 LLVVVGGGAAGVYGAIRAK----TVAPKLNVVIIEKGKPLSKVKISGGG-RCNVT-NG--HCADKMILAGH-----YPRG 118 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la----~~~~g~~V~llE~~~~g~k~~~sG~g-~~n~~-~~--~~~~~~~~~~~-----~~~~ 118 (481)
||+|||+|.|||+||+.++ + .|.+|+||||...++...+++++ .++.. .. ...++..+... ....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e--~G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~ 78 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDK--KGLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLV 78 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhh--CCCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCC
Confidence 8999999999999999998 5 68999999987665432233331 12211 10 01112222211 1122
Q ss_pred ChhchhhHHhcCChHHHHHHHHhcCCcceeec-CCeeeecC-----CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC
Q 011610 119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTED-DGRVFPVS-----DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN 192 (481)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~-~g~~~p~~-----~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~ 192 (481)
+..+++.+.. ...+.++|+.++|+++.... .+...+.. .....+.+.+...+.+.+++++.++.|+++..++
T Consensus 79 d~~lV~~lv~--~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~ 156 (614)
T TIGR02061 79 REDLIFDMAR--HVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLLLDK 156 (614)
T ss_pred cHHHHHHHHH--HHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEEecC
Confidence 3344433322 23578899999999987542 33222110 1245666677777777789999999999999753
Q ss_pred C--CCeEEEEEeecccCceEEEEcCeEEEccCC-----------------------ChhHHHHHHHcCCCcccCCCceeE
Q 011610 193 A--GRKFLLKVEKRTMNLVECIEADYLLIASGS-----------------------SQQGHRLAAQLGHSIVDPVPSLFT 247 (481)
Q Consensus 193 ~--~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~-----------------------~g~g~~la~~~G~~i~~~~p~l~~ 247 (481)
+ +..++|...+..++....+.|+.||+|||+ +|+|+.+|.++|+.+.++.+.++|
T Consensus 157 ~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly~~~~~~~~~~~~~~~~~~TGdGi~mA~~aGA~l~dme~qf~p 236 (614)
T TIGR02061 157 NTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRPRSVGEGAGRAWYAVWNAGSTYTMCAQAGAEMTQMENRFVP 236 (614)
T ss_pred CCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccccccCCcccccccccccCCCCcCcHHHHHHHHcCCCccCCccceec
Confidence 1 245576653322333457899999999995 245789999999999999888888
Q ss_pred eeeCcc
Q 011610 248 FKIADS 253 (481)
Q Consensus 248 ~~~~~~ 253 (481)
+.+.++
T Consensus 237 t~~~~~ 242 (614)
T TIGR02061 237 ARFKDG 242 (614)
T ss_pred ceeccc
Confidence 877643
No 43
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.87 E-value=1.1e-20 Score=202.24 Aligned_cols=173 Identities=14% Similarity=0.136 Sum_probs=102.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC---CCCceEEecCCceeeccCC------CcchhHHhhccC---
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK---PLSKVKISGGGRCNVTNGH------CADKMILAGHYP--- 116 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~---~g~k~~~sG~g~~n~~~~~------~~~~~~~~~~~~--- 116 (481)
.++||+|||+|.+||+||+.+++ .|++|+||||.. .|+....++++-+-..+.. ..+...+...+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~--~G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~ 80 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELAD--AGKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSA 80 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhcc
Confidence 57899999999999999999999 799999999765 4555544544322111100 011111111111
Q ss_pred --CCChhc-----hhhHHhcCChHHHHHHHHhcCCcceeec----C--------Ceeeec----CCChHHHHHHHHHHHH
Q 011610 117 --RGHKEF-----RGSFFSLHGPMDTMSWFSDHGVELKTED----D--------GRVFPV----SDSSSSVIDCLLTEAK 173 (481)
Q Consensus 117 --~~~~~~-----~~~~l~~~~~~~~~~~~~~~Gi~~~~~~----~--------g~~~p~----~~~a~~~~~~l~~~~~ 173 (481)
.....+ ...+ ......+.++|++++|+++.... . +..+|. ......++..|.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~~~~~ 159 (549)
T PRK12834 81 GFDRPEDHWPRQWAEAY-VDFAAGEKRSWLHSLGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFERRVR 159 (549)
T ss_pred CCCCccccchHHHHHHH-HHhCCHHHHHHHHHcCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHHHHHH
Confidence 011111 1222 22223578899999999875321 0 001111 1123457777776654
Q ss_pred ----hCCCEEEcCceEEEEEecCCCCeEEEEEeeccc-------------CceEEEEcCeEEEccCCCh
Q 011610 174 ----HRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM-------------NLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 174 ----~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~-------------~~~~~i~ad~VIlAtG~~g 225 (481)
+.||+|++++++++|..++ +..++|....... ++...+.|+.||+|||+.+
T Consensus 160 ~~~~~~gv~i~~~t~~~~Li~~~-g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~ 227 (549)
T PRK12834 160 EAAARGLVRFRFRHRVDELVVTD-GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIG 227 (549)
T ss_pred HHHHhCCceEEecCEeeEEEEeC-CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcc
Confidence 3369999999999998765 4566776521000 1124789999999999633
No 44
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.86 E-value=8.4e-20 Score=205.33 Aligned_cols=356 Identities=17% Similarity=0.130 Sum_probs=193.8
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccC---CCcchhHHhhccC-----CC
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNG---HCADKMILAGHYP-----RG 118 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~---~~~~~~~~~~~~~-----~~ 118 (481)
...++||+|||||.|||+||+.+++ .|.+|+|+||..++.+.... .+.+.+.+. ...++..+..... ..
T Consensus 10 ~~~~~DVlVVG~G~AGl~AAl~Aa~--~G~~V~lleK~~~~~sg~~~-~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~ 86 (897)
T PRK13800 10 LRLDCDVLVIGGGTAGTMAALTAAE--HGANVLLLEKAHVRHSGALA-MGMDGVNNAVIPGKAEPEDYVAEITRANDGIV 86 (897)
T ss_pred ceeecCEEEECcCHHHHHHHHHHHH--CCCeEEEEecccccCCCccc-CCchhhhcccCCCccCHHHHHHHHHhhcCCCC
Confidence 3357899999999999999999998 78999999987654221111 112222111 1112222222211 11
Q ss_pred ChhchhhHHhcCChHHHHHHHHhcCCcceeecCCee----eec-------CCChHHHHHHHHHHHHhC----CCEEEcCc
Q 011610 119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRV----FPV-------SDSSSSVIDCLLTEAKHR----GVVLQTGK 183 (481)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~----~p~-------~~~a~~~~~~l~~~~~~~----Gv~i~~~~ 183 (481)
+..+++.+. . ...+.++|+.++|+++.....|.+ +.. ......+...|.+.+.+. ++.+..++
T Consensus 87 d~~~v~~~~-~-~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~ 164 (897)
T PRK13800 87 NQRTVYQTA-T-RGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRL 164 (897)
T ss_pred CHHHHHHHH-H-hHHHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEece
Confidence 233333321 1 224678899999999876544422 111 113556777777776544 68888888
Q ss_pred eEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCC---------------------hhHHHHHHHcCCCcccCC
Q 011610 184 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS---------------------QQGHRLAAQLGHSIVDPV 242 (481)
Q Consensus 184 ~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~---------------------g~g~~la~~~G~~i~~~~ 242 (481)
.+.++..++ +...+|..-+..++....+.|+.||+|||+. |+|+.++.++|..+..+.
T Consensus 165 ~~~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~p~~~~~~~~~~~~~~tGDG~amA~raGA~l~~me 243 (897)
T PRK13800 165 MPVRVLTEG-GRAVGAAALNTRTGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYENPTNAGDGYSMAYHAGAELSGIE 243 (897)
T ss_pred eeEEEEeeC-CEEEEEEEEecCCCcEEEEECCEEEECCCccccCCCCCcccccCccCCCCcccHHHHHHHHcCCcccCce
Confidence 888887654 4455666533223334578999999999962 578999999999986553
Q ss_pred CceeEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEE
Q 011610 243 PSLFTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTV 322 (481)
Q Consensus 243 p~l~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~ 322 (481)
++++.. ......|..+. ..++ ..| ..+.+..|+.++...-.++- +...+.+++.+.+. .+++
T Consensus 244 --~vqfhP---t~~~~~g~~~~-~~~~--~~G----~~lvN~~GeRFm~~~~~~~~----i~~~i~~ei~~g~g--~vyL 305 (897)
T PRK13800 244 --CFQINP---LIKDYNGPACA-YVAN--PFG----GYQVNAQGERFVDSDYWSGQ----MMAEVKREIESARG--PIYL 305 (897)
T ss_pred --eEEeec---cccCCCCchhh-eeec--ccC----cEEECCCCCccccCcccchh----HHHHHHHHHhcCCC--CEEE
Confidence 344432 11112222111 0110 001 12334455554432223331 11123345544333 3555
Q ss_pred ecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEc
Q 011610 323 DFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVA 402 (481)
Q Consensus 323 d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~ 402 (481)
|+- .+..+.++ .|....... ..|- ...++...|+++.+. ++++.
T Consensus 306 D~~-~l~~e~~~-~l~~~~~~~-------------~~p~--~~~~~~~~G~d~~~~-------------------~i~v~ 349 (897)
T PRK13800 306 KVS-HLPEETLS-ALESILHTT-------------ERPT--RGTFHANRGHDYRTH-------------------DIEMH 349 (897)
T ss_pred ECC-CCCHHHHH-HHHHhhhhc-------------ccch--HHHHHHhcCCCcccc-------------------cceec
Confidence 553 23333332 221111110 0011 112333357776431 22232
Q ss_pred ccCCCceeEEecCCCCCCCCCcccccccCCCCeEEEEEEeecccCcchHH-HHHHHHHHHHHHHHHhHHhh
Q 011610 403 GKGQFKDEFVTAGGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFN-FQNAWSGGYIAGTSIGKLSN 472 (481)
Q Consensus 403 ~~~~~~~a~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~ldv~g~~GGyn-l~~A~~sG~~AG~~aa~~~~ 472 (481)
....+..+..++|||.+|+- + .+.+||||+|||+. |++.| |.-|+..|++||++|++++.
T Consensus 350 p~~~~~~~~~~~GGi~vd~~----~-~T~v~GLfAaGE~a-----~~~~nsl~~a~v~G~~Ag~~a~~~~~ 410 (897)
T PRK13800 350 ISEIGLCSGHSASGVWVDEH----A-RTTVPGLYAAGDLA-----CVPHNYMIGAFVFGDLAGAHAAGTLA 410 (897)
T ss_pred ccccccccCCCcceEEecCC----C-cccCCCeEechhcc-----CcchhhhhhHHHhHHHHHHHHHHHHh
Confidence 22233334457899987632 2 35799999999875 33334 66799999999999998864
No 45
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.86 E-value=8.3e-20 Score=209.75 Aligned_cols=393 Identities=19% Similarity=0.148 Sum_probs=203.6
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccC-----CCcchhH-Hhhc------
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNG-----HCADKMI-LAGH------ 114 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~-----~~~~~~~-~~~~------ 114 (481)
+..+||||||+|.||++||+.+++ .|.+|+||||. ..|+....++++-+...+. ...+..+ +...
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae--~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~ 484 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAAS--CGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGK 484 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhcc
Confidence 356899999999999999999999 79999999976 5554333333332211110 0011111 1111
Q ss_pred cCCCChhchhhHHhcCChHHHHHHHHhcCCcceee--cCCeeeecC------------CChHHHHHHHHHHHHh---CCC
Q 011610 115 YPRGHKEFRGSFFSLHGPMDTMSWFSDHGVELKTE--DDGRVFPVS------------DSSSSVIDCLLTEAKH---RGV 177 (481)
Q Consensus 115 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~--~~g~~~p~~------------~~a~~~~~~l~~~~~~---~Gv 177 (481)
....+..+++.+.. ...+.++|+.++|+++... ..+..++.. .....+++.|.+.+++ .||
T Consensus 485 ~~~~d~~lv~~~~~--~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv 562 (1167)
T PTZ00306 485 GGHCDPGLVKTLSV--KSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRV 562 (1167)
T ss_pred CCCCCHHHHHHHHH--hhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCc
Confidence 01223344443322 2357889999999887531 111111110 0134567778777765 499
Q ss_pred EEEcCceEEEEEecCC----C----CeEEEEEeec--ccCceEEEEcCeEEEccCCC-----------------------
Q 011610 178 VLQTGKVVTTASSDNA----G----RKFLLKVEKR--TMNLVECIEADYLLIASGSS----------------------- 224 (481)
Q Consensus 178 ~i~~~~~V~~i~~~~~----~----~~~~V~~~~~--~~~~~~~i~ad~VIlAtG~~----------------------- 224 (481)
+|++++++++|..+++ + ...+|.+.+. .++....+.|+.||+|||+.
T Consensus 563 ~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~e~~~m~~~y~p~~~~~~~~ 642 (1167)
T PTZ00306 563 TIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDHTPNSLLREYAPQLSGFPTT 642 (1167)
T ss_pred EEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCccHHHHHHHhCccccCCCCC
Confidence 9999999999997531 1 3456766531 02333579999999999952
Q ss_pred ------hhHHHHHHHcCCCcccCCCcee-Ee--eeCccc-cc-cc---cCceeccEEEEEEecCccCCCCccceecCeEE
Q 011610 225 ------QQGHRLAAQLGHSIVDPVPSLF-TF--KIADSQ-LT-EL---SGVSFPKVVAKLKLENVQRSSPYLTQVGPMLV 290 (481)
Q Consensus 225 ------g~g~~la~~~G~~i~~~~p~l~-~~--~~~~~~-~~-~l---~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lf 290 (481)
|+|..|+.++|..+..+..... +. ...... .. .+ ..++... .+-+. ..|+.+.
T Consensus 643 ~~~~~tGDGi~mA~~aGA~l~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g-~ilVN------------~~GkRF~ 709 (1167)
T PTZ00306 643 NGPWATGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNRTKYLGPEALRGSG-GVLLN------------KNGERFV 709 (1167)
T ss_pred CCCCcccHHHHHHHHcCCcCcCccceeEcceeecCCCCCCCcccceeeehhcCCc-eEEEC------------CCCCCcc
Confidence 4567777777776543321110 00 000000 00 00 0000000 11121 1222221
Q ss_pred EeccccchhhcccchhhHHHhHcc----C-ceeEEEEecCCCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHH
Q 011610 291 THWGLSGPVILRLSAWGARYLFSS----C-YKGMLTVDFVPDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWK 365 (481)
Q Consensus 291 t~~glsG~~il~lS~~~~~~~~~~----~-~~~~~~~d~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 365 (481)
.+.. ...+ +++.+....... + ....+..| .... +.+.. ...... ....+..+....++
T Consensus 710 nE~~--~~~~--~~~ai~~~~~~~~~~~~~~~~~~i~D------~~~~-~~~~~----~~~~~~--~~~~g~~~kADTle 772 (1167)
T PTZ00306 710 NELD--LRSV--VSQAIIAQGNEYPGSGGSKFAYCVLN------EAAA-KLFGK----NSLGFY--WKRLGLFQRVDDVK 772 (1167)
T ss_pred cccC--cHHH--HHHHHHhhcccccccccCceEEEEEc------hHHH-hhhhh----hhhhhh--hhhcCeEEEeCCHH
Confidence 1110 0000 111111100000 0 01222221 1110 00000 000000 00000022345678
Q ss_pred HHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEE------E--cccCCCce------eEEecCCCCCCCC----Ccc--
Q 011610 366 YILGREGLSGDTLWASVSNNSLISIARLLKHCTLE------V--AGKGQFKD------EFVTAGGVPLSEI----SLN-- 425 (481)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~------v--~~~~~~~~------a~vt~GGv~~~ei----~~~-- 425 (481)
+|++++|++++...+.+ +.++.++..-++.+|. + ....||-- ...|.||+.+++- |.+
T Consensus 773 ELA~~~gid~~~L~aTV--~rYN~~~~~G~d~~f~~~~~~p~~~~~~~PfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~ 850 (1167)
T PTZ00306 773 GLAKLIGCPVENLHRTL--ETYERLSTKKVACPLTGKVVFPCVVGTQGPYYVAFVTPSIHYTMGGCLISPSAEMQMEDNS 850 (1167)
T ss_pred HHHHHhCCCHHHHHHHH--HHHHHHHhcCCCCccCCCccCCCcCCCCCCEEEEEEecccccccCCeEECCCceEEeccCc
Confidence 88888899887665554 5666666543332221 0 02333322 4558999998852 111
Q ss_pred ---cccccCCCCeEEEEEEe-eccc--CcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610 426 ---TMESKIHPRLFFAGEVL-NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSNDATL 476 (481)
Q Consensus 426 ---t~esk~~~gLy~~GE~l-dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~~~~~ 476 (481)
.-+.++|||||+|||+. .++| +.||.++.+|+++||+||++||++++++.+
T Consensus 851 ~~~~~~~~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~~~ 907 (1167)
T PTZ00306 851 VNIFEDRRPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKKY 907 (1167)
T ss_pred cccccCCceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCc
Confidence 11357999999999985 5555 668999999999999999999998866653
No 46
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.86 E-value=4.5e-20 Score=198.27 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=54.1
Q ss_pred cCeEEEcccCCCceeEEecCCCCCCC-CCcccccccCCCCeEEEEEEe-eccc--Ccc-hHHHHHHHHHHHHHHHHHhHH
Q 011610 396 HCTLEVAGKGQFKDEFVTAGGVPLSE-ISLNTMESKIHPRLFFAGEVL-NVDG--VTG-GFNFQNAWSGGYIAGTSIGKL 470 (481)
Q Consensus 396 ~~~~~v~~~~~~~~a~vt~GGv~~~e-i~~~t~esk~~~gLy~~GE~l-dv~g--~~G-Gynl~~A~~sG~~AG~~aa~~ 470 (481)
+-||+.....+- ...|.||+.+++ -...+.+.++|||||+|||+. .+.| +.| |.++.+|+++||+||++||+.
T Consensus 492 ~gPfYA~~~~p~--~~~T~GGl~in~~~qVLd~~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~ 569 (584)
T PRK12835 492 KPPYYAFRIELG--DLGTSGGLRTDEHARVLREDDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAV 569 (584)
T ss_pred cCCeEEEEeccc--ccccCcCccCCCCceEECCCCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHh
Confidence 344554443332 345899999987 333445688999999999986 4554 334 789999999999999999876
Q ss_pred h
Q 011610 471 S 471 (481)
Q Consensus 471 ~ 471 (481)
+
T Consensus 570 ~ 570 (584)
T PRK12835 570 V 570 (584)
T ss_pred h
Confidence 4
No 47
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.86 E-value=1.2e-19 Score=195.31 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=59.8
Q ss_pred hccCeEEEcccCCCceeEEecCCCCCCC-CCcccccccCCCCeEEEEEEe-eccc--Ccc-hHHHHHHHHHHHHHHHHHh
Q 011610 394 LKHCTLEVAGKGQFKDEFVTAGGVPLSE-ISLNTMESKIHPRLFFAGEVL-NVDG--VTG-GFNFQNAWSGGYIAGTSIG 468 (481)
Q Consensus 394 l~~~~~~v~~~~~~~~a~vt~GGv~~~e-i~~~t~esk~~~gLy~~GE~l-dv~g--~~G-Gynl~~A~~sG~~AG~~aa 468 (481)
+.+-||+.....+- -..|.||+.+++ -.....+.++|||||+|||+. .+.| +.| |.++.+|+++||+||++||
T Consensus 487 i~~~PfYA~~~~~~--~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa 564 (574)
T PRK12842 487 IGSGPFYAVKVIMG--DLGTFDGLRTDVTGEVLDADGTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLA 564 (574)
T ss_pred CCCCCEEEEEeccc--ccccCCCcCCCCCceEECCCCCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 34456665554442 456899999986 222444688999999999976 4544 334 8899999999999999999
Q ss_pred HHhhHhhh
Q 011610 469 KLSNDATL 476 (481)
Q Consensus 469 ~~~~~~~~ 476 (481)
+.+..+.|
T Consensus 565 ~~~~~~~~ 572 (574)
T PRK12842 565 GVAGGRKL 572 (574)
T ss_pred hhhccccc
Confidence 88876655
No 48
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.86 E-value=8.3e-20 Score=196.44 Aligned_cols=188 Identities=22% Similarity=0.257 Sum_probs=117.0
Q ss_pred CCCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccC-----CCcc-hhHHh---hc
Q 011610 45 THTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNG-----HCAD-KMILA---GH 114 (481)
Q Consensus 45 ~~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~-----~~~~-~~~~~---~~ 114 (481)
..++.++||+|||+|++|++||+.+++ .|++|+|||+. ..|.....++++.+-..+. ...+ ...+. ..
T Consensus 11 ~~~~~~~dvvvvG~G~aG~~aa~~~~~--~g~~v~l~ek~~~~gg~~~~s~g~~~~~~~~~q~~~g~~ds~e~~~~~~~~ 88 (578)
T PRK12843 11 ERWDAEFDVIVIGAGAAGMSAALFAAI--AGLKVLLVERTEYVGGTTATSAGTTWIPGTRHGLAVGPDDSLEAARTYLDA 88 (578)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcccccCceeecCCchHhhhccccccHHHHHHHHHH
Confidence 446678999999999999999999999 79999999965 5566555555443211110 0011 11111 11
Q ss_pred cC--CCChhchhhHHhcCChHHHHHHHHh-cCCcceeec--------------CCe---ee-------------------
Q 011610 115 YP--RGHKEFRGSFFSLHGPMDTMSWFSD-HGVELKTED--------------DGR---VF------------------- 155 (481)
Q Consensus 115 ~~--~~~~~~~~~~l~~~~~~~~~~~~~~-~Gi~~~~~~--------------~g~---~~------------------- 155 (481)
+. ..+..+++.++.. ..+.++|+++ .|+.+.... .++ .+
T Consensus 89 ~~~~~~d~~lv~~~~~~--s~e~i~wl~~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (578)
T PRK12843 89 LVGDRSPEELRDAFLAS--GPRAIAFLEANSEVKFRAYASHPDYESDLPGATLRGRALEPLPFDGRKLGADFALIRPPIP 166 (578)
T ss_pred hhCCCCcHHHHHHHHhc--cHHHHHHHHHcCCceeeeCCCCCCCCCCCCCCCCCCCcccCCCCChhhhhhHHHHhccccc
Confidence 11 1233444443332 2367889986 676663210 000 00
Q ss_pred ---------------------------------------------ecC---CChHHHHHHHHHHHHhCCCEEEcCceEEE
Q 011610 156 ---------------------------------------------PVS---DSSSSVIDCLLTEAKHRGVVLQTGKVVTT 187 (481)
Q Consensus 156 ---------------------------------------------p~~---~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~ 187 (481)
|.. .....++..|.+.+++.|++++++++|++
T Consensus 167 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~ 246 (578)
T PRK12843 167 EFTVLGGMMVDRTDVGHLLALTKSWRAFRHAVRLLARYARDRISYARGTRLVMGNALIGRLLYSLRARGVRILTQTDVES 246 (578)
T ss_pred cccccccccccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 000 01345778889999999999999999999
Q ss_pred EEecCCCCeEEEEEeecccCceEEEEc-CeEEEccCC--------------------------ChhHHHHHHHcCCCcc
Q 011610 188 ASSDNAGRKFLLKVEKRTMNLVECIEA-DYLLIASGS--------------------------SQQGHRLAAQLGHSIV 239 (481)
Q Consensus 188 i~~~~~~~~~~V~~~~~~~~~~~~i~a-d~VIlAtG~--------------------------~g~g~~la~~~G~~i~ 239 (481)
+..++ +...+|.+.. .++...+.| +.||+|||+ +|++..++.++|..+.
T Consensus 247 Li~~~-g~V~GV~~~~--~g~~~~i~A~~~VVlAtGg~~~n~em~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~Ga~~~ 322 (578)
T PRK12843 247 LETDH-GRVIGATVVQ--GGVRRRIRARGGVVLATGGFNRHPQLRRELLPAAVARYSPGAPGHTGAAIDLALDAGARYG 322 (578)
T ss_pred EEeeC-CEEEEEEEec--CCeEEEEEccceEEECCCCcccCHHHHHHhCCCCcccccCCCCCCCcHHHHHHHHhCCCcc
Confidence 98754 4555676653 222346776 789999994 3567788888887764
No 49
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.86 E-value=1.1e-19 Score=194.13 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=54.1
Q ss_pred hccCeEEEcccCCCceeEEecCCCCCCCCC-cccccccCCCCeEEEEEEe-eccc--Ccc-hHHHHHHHHHHHHHHHHHh
Q 011610 394 LKHCTLEVAGKGQFKDEFVTAGGVPLSEIS-LNTMESKIHPRLFFAGEVL-NVDG--VTG-GFNFQNAWSGGYIAGTSIG 468 (481)
Q Consensus 394 l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~-~~t~esk~~~gLy~~GE~l-dv~g--~~G-Gynl~~A~~sG~~AG~~aa 468 (481)
+.+-||+.....+ .-..|.||+.+++-- ...-+.++|||||+|||+. .+.| +.| |.++.+|+++||+||++||
T Consensus 485 i~~gPfYA~~~~p--~~~~T~GGl~id~~~qVLd~dg~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa 562 (564)
T PRK12845 485 LDKGPFYAVKMVL--SDLGTCGGLRADERARVLREDGSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAA 562 (564)
T ss_pred cccCCEEEEEecc--ccceecCCeeECCCceEECCCCCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHh
Confidence 3345566654433 235689999998632 2334578999999999986 4554 444 8999999999999999997
Q ss_pred H
Q 011610 469 K 469 (481)
Q Consensus 469 ~ 469 (481)
+
T Consensus 563 ~ 563 (564)
T PRK12845 563 A 563 (564)
T ss_pred c
Confidence 4
No 50
>PRK12839 hypothetical protein; Provisional
Probab=99.85 E-value=2e-19 Score=192.65 Aligned_cols=75 Identities=25% Similarity=0.249 Sum_probs=55.2
Q ss_pred hccCeEEEcccCCCceeEEecCCCCCCCCC-cccccccCCCCeEEEEEEe-ecccC---cchHHHHHHHHHHHHHHHHHh
Q 011610 394 LKHCTLEVAGKGQFKDEFVTAGGVPLSEIS-LNTMESKIHPRLFFAGEVL-NVDGV---TGGFNFQNAWSGGYIAGTSIG 468 (481)
Q Consensus 394 l~~~~~~v~~~~~~~~a~vt~GGv~~~ei~-~~t~esk~~~gLy~~GE~l-dv~g~---~GGynl~~A~~sG~~AG~~aa 468 (481)
+.+-||+.....+- ...|.||+.+++-- ..+-+.++|||||+|||+. .+.|. .+|.++.+|+.+||+||++||
T Consensus 488 i~~gPfYA~~~~p~--~~~T~GGl~in~~~qVLd~dg~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA 565 (572)
T PRK12839 488 LEKGPFYAVKVVPG--SFGTFAGLVADGKSRVLRDDDTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELA 565 (572)
T ss_pred CCCCCeEEEEEecc--ccccCCCccCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHH
Confidence 34456666554432 56699999998622 2334678999999999965 45552 468899999999999999997
Q ss_pred HH
Q 011610 469 KL 470 (481)
Q Consensus 469 ~~ 470 (481)
+.
T Consensus 566 ~~ 567 (572)
T PRK12839 566 GS 567 (572)
T ss_pred hc
Confidence 54
No 51
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.85 E-value=1.7e-19 Score=194.20 Aligned_cols=78 Identities=24% Similarity=0.261 Sum_probs=56.9
Q ss_pred ccCeEEEcccCCCceeEEecCCCCCCC-CCcccccccCCCCeEEEEEEe-ecccC---cchHHHHHHHHHHHHHHHHHhH
Q 011610 395 KHCTLEVAGKGQFKDEFVTAGGVPLSE-ISLNTMESKIHPRLFFAGEVL-NVDGV---TGGFNFQNAWSGGYIAGTSIGK 469 (481)
Q Consensus 395 ~~~~~~v~~~~~~~~a~vt~GGv~~~e-i~~~t~esk~~~gLy~~GE~l-dv~g~---~GGynl~~A~~sG~~AG~~aa~ 469 (481)
.+-||+.....+. ...|.||+.+++ -...+-+.++|||||+|||+. .+.|. .||.++.+|+++||+||++||+
T Consensus 492 ~~gPfYA~~~~~~--~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~ 569 (581)
T PRK06134 492 EHGPFYAVKVLPG--CLGTFAGLKTDADARVLDQAGQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAG 569 (581)
T ss_pred CCCCeEEEEeecc--ccccCCCccCCCCCceECCCCCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhh
Confidence 3455655544433 556999999986 222444688999999999965 45442 3688999999999999999987
Q ss_pred HhhHh
Q 011610 470 LSNDA 474 (481)
Q Consensus 470 ~~~~~ 474 (481)
...+.
T Consensus 570 ~~~~~ 574 (581)
T PRK06134 570 ASGYE 574 (581)
T ss_pred cCCcc
Confidence 76443
No 52
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.83 E-value=1.8e-19 Score=193.06 Aligned_cols=73 Identities=25% Similarity=0.281 Sum_probs=53.4
Q ss_pred cCeEEEcccCCCceeEEecCCCCCCCC-CcccccccCCCCeEEEEEEe-eccc--Ccc-hHHHHHHHHHHHHHHHHHhHH
Q 011610 396 HCTLEVAGKGQFKDEFVTAGGVPLSEI-SLNTMESKIHPRLFFAGEVL-NVDG--VTG-GFNFQNAWSGGYIAGTSIGKL 470 (481)
Q Consensus 396 ~~~~~v~~~~~~~~a~vt~GGv~~~ei-~~~t~esk~~~gLy~~GE~l-dv~g--~~G-Gynl~~A~~sG~~AG~~aa~~ 470 (481)
+-||+.....+- ...|.||+.+++- ...+.+.++|||||+|||+. .+.| +.| |.++.+|+++||+||++||+.
T Consensus 479 ~~PfYA~~~~~~--~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~~ 556 (557)
T PRK07843 479 HAPFYAAKMVPG--DLGTKGGLRTDVRGRVLRDDGSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAAQ 556 (557)
T ss_pred CCCeEEEEEecc--cceeCCCceECCCceEECCCCCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhhc
Confidence 345554443332 3568999999862 22344678999999999986 5655 445 889999999999999999754
No 53
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.82 E-value=1.9e-19 Score=189.35 Aligned_cols=65 Identities=25% Similarity=0.427 Sum_probs=58.4
Q ss_pred CCceeEEecCCCCC--CCCCc----ccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610 406 QFKDEFVTAGGVPL--SEISL----NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL 476 (481)
Q Consensus 406 ~~~~a~vt~GGv~~--~ei~~----~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~ 476 (481)
+++.|+++++|+.+ +.+|| .|||+|.+||||||| |++|.+| |+ .||++|.+||.+|+..++.+++
T Consensus 325 Gle~a~~~r~gy~~e~~~i~p~~l~~~le~k~~~gLf~AG---qi~Gt~G-y~--eAaa~Gl~Ag~naa~~~~~~~~ 395 (617)
T TIGR00136 325 GLENAEILRPGYAIEYDFFDPRQLKPTLETKLIQGLFFAG---QINGTTG-YE--EAAAQGLMAGINAALKLQNKEP 395 (617)
T ss_pred CcccceEeccccceEEeEEChhhCchhheeCCCCCeEEcc---ccCCcch-HH--HHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999887 88999 999999999999999 6999555 99 7888999999999999877654
No 54
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.82 E-value=3.8e-18 Score=171.67 Aligned_cols=343 Identities=16% Similarity=0.239 Sum_probs=203.5
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCC--ceEEecCCceeeccCCCcchhHH-----hhccCCCChhchh
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLS--KVKISGGGRCNVTNGHCADKMIL-----AGHYPRGHKEFRG 124 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~--k~~~sG~g~~n~~~~~~~~~~~~-----~~~~~~~~~~~~~ 124 (481)
||+|||+|.|||++|+.|++ ..+|+||-|...+. +.++-||-...+......+ ... +..+.. +...+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~---~~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~-~Hv~DTL~AG~glc-D~~aV~ 83 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP---SFRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPE-LHVADTLAAGAGLC-DEEAVE 83 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC---CCcEEEEeCCCCCCccchhhcCceEeeeCCCCCHH-HHHHHHHHhcCCCC-cHHHHH
Confidence 89999999999999999997 48999999876552 3333344333333321111 111 111221 222222
Q ss_pred hHHhcCChHHHHHHHHhcCCcceeecCCee-e------------e-cCCChHHHHHHHHHHHHh-CCCEEEcCceEEEEE
Q 011610 125 SFFSLHGPMDTMSWFSDHGVELKTEDDGRV-F------------P-VSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTTAS 189 (481)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~-~------------p-~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~ 189 (481)
.+.. .....++|+..+|+++..+..+.+ + . .+.....++..|.+.+++ .+++++.++.+.+|.
T Consensus 84 ~iv~--~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li 161 (518)
T COG0029 84 FIVS--EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLI 161 (518)
T ss_pred HHHH--hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhh
Confidence 2211 235678899999999987664421 1 1 123467889999999876 799999999999998
Q ss_pred ecCCCCeE-EEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCccc
Q 011610 190 SDNAGRKF-LLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQ 254 (481)
Q Consensus 190 ~~~~~~~~-~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~ 254 (481)
.++ +..+ +|.+.+. .+.-..++|+.||+|||+ .|+|..||.+.|..+..+ .+++|...--.
T Consensus 162 ~~~-~~~~~Gv~~~~~-~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~Dl--EFvQFHPT~l~ 237 (518)
T COG0029 162 IED-GIGVAGVLVLNR-NGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADL--EFVQFHPTALY 237 (518)
T ss_pred hcC-CceEeEEEEecC-CCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCc--cceeeccceec
Confidence 876 4355 7777641 112468999999999994 577889999999988654 34444433211
Q ss_pred cccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccc---h-hhcccchhhHHHhHccCceeEEEEecCCCCCH
Q 011610 255 LTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSG---P-VILRLSAWGARYLFSSCYKGMLTVDFVPDLHI 330 (481)
Q Consensus 255 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG---~-~il~lS~~~~~~~~~~~~~~~~~~d~~p~~~~ 330 (481)
.. +-+. .-++--+.| .+..+....||.+.-+|.--| | -| ++|.|..++.+.+.+ ++||.-|-...
T Consensus 238 ~~---~~~~--~LiSEAVRG--EGA~L~~~~GeRFm~~~~p~~ELAPRDV--VARAI~~e~~~~g~~--V~LD~s~~~~~ 306 (518)
T COG0029 238 IP---QRRA--FLISEAVRG--EGAILVNEDGERFMPDYHPRGELAPRDV--VARAIDAEMKRGGAD--VFLDISHIPGD 306 (518)
T ss_pred CC---CCcc--ceeehhhhc--CccEEECCCCCccccCCCCccccchHHH--HHHHHHHHHHhcCCe--EEEeccCCCch
Confidence 11 0000 001100011 012233344554443332101 1 00 123344455554433 55665443221
Q ss_pred HHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCcee
Q 011610 331 EDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDE 410 (481)
Q Consensus 331 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a 410 (481)
++.+ .+| .+...|...|||+- +-|++|... |
T Consensus 307 -----~~~~---rFP-----------------~I~~~c~~~GiD~~-------------------r~~IPV~Pa-----a 337 (518)
T COG0029 307 -----FFER---RFP-----------------TIYAACLKAGIDPT-------------------REPIPVVPA-----A 337 (518)
T ss_pred -----hhhh---hCc-----------------HHHHHHHHcCCCcc-------------------cCccCccch-----h
Confidence 1111 111 14456677899875 333444444 5
Q ss_pred EEecCCCCCCCCCcccccccCCCCeEEEEEEee--ccc--CcchHHHHHHHHHHHHHHHHHhHH
Q 011610 411 FVTAGGVPLSEISLNTMESKIHPRLFFAGEVLN--VDG--VTGGFNFQNAWSGGYIAGTSIGKL 470 (481)
Q Consensus 411 ~vt~GGv~~~ei~~~t~esk~~~gLy~~GE~ld--v~g--~~GGynl~~A~~sG~~AG~~aa~~ 470 (481)
..|+|||.+|... -+.+||||++||+.. ++| +.--..|.-|..+|..|+++++..
T Consensus 338 HY~mGGI~vD~~G-----rTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~ 396 (518)
T COG0029 338 HYTMGGIAVDANG-----RTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGR 396 (518)
T ss_pred heecccEEECCCC-----cccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 5799999997443 468899999999874 566 445567899999999999999764
No 55
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.79 E-value=3.4e-17 Score=175.77 Aligned_cols=340 Identities=15% Similarity=0.175 Sum_probs=187.7
Q ss_pred HHHHHHHhccCCCCcEEEEeCCCCCC-ceEEecCCcee-eccCCCcc-hhHHhhc-----cCCCChhchhhHHhcCChHH
Q 011610 63 VYGAIRAKTVAPKLNVVIIEKGKPLS-KVKISGGGRCN-VTNGHCAD-KMILAGH-----YPRGHKEFRGSFFSLHGPMD 134 (481)
Q Consensus 63 l~aA~~la~~~~g~~V~llE~~~~g~-k~~~sG~g~~n-~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~l~~~~~~~ 134 (481)
|+||+++++ .|.+|+||||..+.+ ...++++|-.. .......+ .+..... -...++.+++.+.. ...+
T Consensus 1 l~AAl~aa~--~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~--~a~~ 76 (570)
T PRK05675 1 MRAALQLAQ--GGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCS--VGPE 76 (570)
T ss_pred ChhHHhHHh--cCCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHH
Confidence 579999999 799999999876543 22333333211 11111112 1111111 11123344433322 2357
Q ss_pred HHHHHHhcCCcceeecCCeeee----------------------cCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC
Q 011610 135 TMSWFSDHGVELKTEDDGRVFP----------------------VSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN 192 (481)
Q Consensus 135 ~~~~~~~~Gi~~~~~~~g~~~p----------------------~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~ 192 (481)
.++|+.++|+++....+|.+.. .......++..|.+.+.+.||+++.++.+++|..++
T Consensus 77 ~i~~L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~ 156 (570)
T PRK05675 77 AVFELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQ 156 (570)
T ss_pred HHHHHHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcC
Confidence 7899999999986543332211 112356788999999999999999999999998753
Q ss_pred CCCeEEEEEeecccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCccccccc
Q 011610 193 AGRKFLLKVEKRTMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTEL 258 (481)
Q Consensus 193 ~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l 258 (481)
++...+|...+..++.-..+.|+.||+|||+ +|+|+.||.++|..+..+.- +++... .+..
T Consensus 157 ~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGDG~~mA~~aGA~l~~me~--~q~~Pt--~~~~- 231 (570)
T PRK05675 157 DGAVVGVIAICIETGETVYIKSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEM--WQFHPT--GIAG- 231 (570)
T ss_pred CCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccccCCCCCCCCcCcHHHHHHHHcCCCeeCccc--eeeecc--eeCC-
Confidence 1355677664322333457899999999994 57899999999998865442 222210 0000
Q ss_pred cCceeccEEEEEEecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccC------ceeEEEEecCCC
Q 011610 259 SGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSC------YKGMLTVDFVPD 327 (481)
Q Consensus 259 ~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~------~~~~~~~d~~p~ 327 (481)
.+.-+. ..+. ..+ ..++...|+.++.+|. +....+ +++.+..++.+.. ..+.+.++.+
T Consensus 232 ~~~l~~-e~~r--g~g----~~lvN~~GeRF~~~y~~~~~el~~rd~--v~~ai~~ei~~~~g~~~~~~~v~ld~~~l-- 300 (570)
T PRK05675 232 AGVLVT-EGCR--GEG----GYLINKHGERFMERYAPNAKDLAGRDV--VARSMVKEILAGNGCGPNKDHVLLKLDHL-- 300 (570)
T ss_pred CceEee-cccc--CCC----cEEECCCCCCcccccCcccccccchhH--HHHHHHHHHHhcCCccCCCCEEEEEcCCC--
Confidence 111110 0000 000 1122334555444432 111111 2333334443321 1133333333
Q ss_pred CCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCC
Q 011610 328 LHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQ 406 (481)
Q Consensus 328 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~ 406 (481)
.++.+++.+ + . +. .+++. .++++. .-|++|...
T Consensus 301 -~~~~l~~~~-------~---------------~-~~-~~~~~~~~~d~~-------------------~~~i~v~P~-- 334 (570)
T PRK05675 301 -GEEVLHSRL-------P---------------G-IC-ELSKTFAHVDPV-------------------VAPIPVVPT-- 334 (570)
T ss_pred -CHHHHHHhc-------c---------------H-HH-HHHHHhcCCCcC-------------------CCceEeehh--
Confidence 222222111 1 0 00 01111 234331 123555443
Q ss_pred CceeEEecCCCCCCCCCccccc------ccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610 407 FKDEFVTAGGVPLSEISLNTME------SKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN 472 (481)
Q Consensus 407 ~~~a~vt~GGv~~~ei~~~t~e------sk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~ 472 (481)
+..|+|||.+++- -.+.. .+.|||||+|||+. .++| +.||..|.+|+++|++||++|++++.
T Consensus 335 ---~h~t~GGi~vd~~-g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 406 (570)
T PRK05675 335 ---CHYMMGGVATNIH-GQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALK 406 (570)
T ss_pred ---HhccCCCcccCCC-CeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHHh
Confidence 5679999988743 34431 25799999999986 5788 77999999999999999999988753
No 56
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.78 E-value=1.4e-17 Score=172.96 Aligned_cols=183 Identities=24% Similarity=0.394 Sum_probs=113.3
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCC-CCceEEecCCceeeccCCC------cc-hhHHhhc----cC-CC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKP-LSKVKISGGGRCNVTNGHC------AD-KMILAGH----YP-RG 118 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~-g~k~~~sG~g~~n~~~~~~------~~-~~~~~~~----~~-~~ 118 (481)
||+|||+|.||++||+.|++ .|.+|+||||... +.....++++ .+...... .+ ...+... .. ..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae--~G~~V~lvek~~~~gg~~~~s~g~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 77 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE--AGAKVLLVEKGPRLGGSSAFSSGG-FDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLN 77 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH--TTT-EEEEESSSGGGSGGGGTCSE-EEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S
T ss_pred CEEEECCCHHHHHHHHHHhh--hcCeEEEEEeecccccccccccCc-eeeecccccccccccccccccceeeeccccccc
Confidence 89999999999999999999 7999999997744 4433333322 22222111 11 2222211 11 11
Q ss_pred ChhchhhHHhcCChHHHHHHHHhcCCcceeecCC--------------eeee-cCC-------ChHHHHHHHHHHHHhCC
Q 011610 119 HKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDG--------------RVFP-VSD-------SSSSVIDCLLTEAKHRG 176 (481)
Q Consensus 119 ~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g--------------~~~p-~~~-------~a~~~~~~l~~~~~~~G 176 (481)
++.+.+.+.. ...+..+|++++|+++.....+ +..+ ..+ ....++..|.+.++++|
T Consensus 78 ~~~~~~~~~~--~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~g 155 (417)
T PF00890_consen 78 DPDLVRAFVE--NSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAG 155 (417)
T ss_dssp -HHHHHHHHH--HHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTT
T ss_pred ccchhhhhhh--cccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcC
Confidence 3333333222 3457789999999887762111 1111 122 35778899999999999
Q ss_pred CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC------------------------ChhHHHHHH
Q 011610 177 VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS------------------------SQQGHRLAA 232 (481)
Q Consensus 177 v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~------------------------~g~g~~la~ 232 (481)
++|++++++++|..++ +...+|...+..+++...+.|+.||+|||+ +|++..++.
T Consensus 156 v~i~~~~~~~~Li~e~-g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~~~~~~~~~~~~~~~~~Gdg~~ma~ 234 (417)
T PF00890_consen 156 VDIRFNTRVTDLITED-GRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQYYPPGPYAMTTGPPGNTGDGIAMAL 234 (417)
T ss_dssp EEEEESEEEEEEEEET-TEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH-GGGGSSSBSSGTTTSSHHHHHHH
T ss_pred eeeeccceeeeEEEeC-CceeEEEEEECCCCeEEEEeeeEEEeccCccccccccccccccccccccCCCCcccCchhhhh
Confidence 9999999999999976 555677777433444568999999999995 345788888
Q ss_pred HcCCCccc
Q 011610 233 QLGHSIVD 240 (481)
Q Consensus 233 ~~G~~i~~ 240 (481)
++|..+..
T Consensus 235 ~aGa~~~~ 242 (417)
T PF00890_consen 235 RAGAALSN 242 (417)
T ss_dssp HTTCCEES
T ss_pred ccCccccC
Confidence 88888655
No 57
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=99.77 E-value=2e-16 Score=169.79 Aligned_cols=332 Identities=14% Similarity=0.150 Sum_probs=181.6
Q ss_pred CCCcEEEEeCCCCCC-ceEEecCCcee-eccCCCcchhHHhhcc-----CCCChhchhhHHhcCChHHHHHHHHhcCCcc
Q 011610 74 PKLNVVIIEKGKPLS-KVKISGGGRCN-VTNGHCADKMILAGHY-----PRGHKEFRGSFFSLHGPMDTMSWFSDHGVEL 146 (481)
Q Consensus 74 ~g~~V~llE~~~~g~-k~~~sG~g~~n-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~ 146 (481)
.|++|+|+||..+.+ ....+++|-.. .++....+++.++... ...++.+++.+.. ...+.++|+.++|+++
T Consensus 4 ~G~~VilveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~--~s~~~i~~L~~~Gv~f 81 (565)
T TIGR01816 4 GGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCK--QAPEAVLELEHMGMPF 81 (565)
T ss_pred CCCceEEEEcCCCCCccHHHhcchheeccCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHHHHhcCccc
Confidence 689999999875543 33333333221 1111111121222111 1123344433322 2357789999999998
Q ss_pred eeecCCeee----------------------ecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610 147 KTEDDGRVF----------------------PVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR 204 (481)
Q Consensus 147 ~~~~~g~~~----------------------p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~ 204 (481)
.....+.+. +.......++..|.+.+++.||+|+.++.+++|..++ +...+|...+.
T Consensus 82 ~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-g~v~Ga~~~~~ 160 (565)
T TIGR01816 82 SRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLMED-GECRGVIAYCL 160 (565)
T ss_pred ccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC-CEEEEEEEEEc
Confidence 653333221 1112346788999999999999999999999998765 45567665321
Q ss_pred ccCceEEEEcCeEEEccCC--------------ChhHHHHHHHcCCCcccCCCceeEeeeCccccccccCceeccEEEEE
Q 011610 205 TMNLVECIEADYLLIASGS--------------SQQGHRLAAQLGHSIVDPVPSLFTFKIADSQLTELSGVSFPKVVAKL 270 (481)
Q Consensus 205 ~~~~~~~i~ad~VIlAtG~--------------~g~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~l~G~~~~~~~~~~ 270 (481)
.++....+.|+.||+|||+ +|+|+.++.++|..+..+.- +++... .+.. .+.-+. ..++
T Consensus 161 ~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~--~q~~pt--~~~~-~~~l~~-e~~r- 233 (565)
T TIGR01816 161 ETGEIHRFRAKAVVLATGGYGRIYFSTTNAHTLTGDGTGMVTRAGLPLQDMEF--VQFHPT--GIAG-AGCLIT-EGCR- 233 (565)
T ss_pred CCCcEEEEEeCeEEECCCCccccCCCcCCCCCCccHHHHHHHHcCCcccCCcc--eEEccC--cccC-CceEEe-cccc-
Confidence 2233457899999999995 57889999999999865432 222211 0000 111100 0000
Q ss_pred EecCccCCCCccceecCeEEEecc-----ccchhhcccchhhHHHhHccCc----eeEEEEecCCCCCHHHHHHHHHHHH
Q 011610 271 KLENVQRSSPYLTQVGPMLVTHWG-----LSGPVILRLSAWGARYLFSSCY----KGMLTVDFVPDLHIEDMQSILSQHK 341 (481)
Q Consensus 271 ~~~~~~~~~~~~~~~Ge~lft~~g-----lsG~~il~lS~~~~~~~~~~~~----~~~~~~d~~p~~~~~~l~~~l~~~~ 341 (481)
..+ ...+...|+.++.+|. +....+ +++.+..++.+... ...+.+|+- .++.+.|.+.+..
T Consensus 234 -~~g----~~lvn~~G~RF~~~y~~~~~el~~rd~--v~~ai~~e~~~~~g~~~~~~~v~ld~~-~~~~~~l~~~~~~-- 303 (565)
T TIGR01816 234 -GEG----GILINANGERFMERYAPTAKDLASRDV--VSRSMTLEIREGRGVGPNKDHVYLDLD-HLGPEVLEGRLPG-- 303 (565)
T ss_pred -CCc----eEEECCCCCCCccccCccccccCchhH--HHHHHHHHHHhcCCCCCCCCeEEEEcc-CCCHHHHHHHhhh--
Confidence 000 0122334554444332 111111 22333333322211 113445542 2333333222110
Q ss_pred HhchhhhhhhhCCCccchhHHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCC
Q 011610 342 IRFAKQKVLNSCPPEFCLVKRFWKYILGR-EGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLS 420 (481)
Q Consensus 342 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~ 420 (481)
+..++.. .|+|+.+ -|+++... +..|+|||.++
T Consensus 304 ----------------------~~~~~~~~~G~D~~~-------------------~~i~v~p~-----~h~t~GGi~id 337 (565)
T TIGR01816 304 ----------------------ISETARTFAGVDPVK-------------------DPIPVLPT-----VHYNMGGIPTN 337 (565)
T ss_pred ----------------------HHHHHHHHcCCCCCC-------------------CcEEeeee-----eeeecCCceeC
Confidence 1112222 5666532 13455433 67899999987
Q ss_pred CCCcccc-----cccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610 421 EISLNTM-----ESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGTSIGKLSN 472 (481)
Q Consensus 421 ei~~~t~-----esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~~aa~~~~ 472 (481)
+- ..+. ..+.|||||+|||+. .++| +.||..|.+|+++|++||++||+++.
T Consensus 338 ~~-g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~ 397 (565)
T TIGR01816 338 YH-GQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAK 397 (565)
T ss_pred CC-ceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 42 2332 226899999999986 5676 67899999999999999999998764
No 58
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.73 E-value=1.7e-17 Score=157.49 Aligned_cols=186 Identities=21% Similarity=0.322 Sum_probs=110.0
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCC-ceEEe-c-CCceeeccC--CCcc-hhHHhhc-----cCCCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLS-KVKIS-G-GGRCNVTNG--HCAD-KMILAGH-----YPRGH 119 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~-k~~~s-G-~g~~n~~~~--~~~~-~~~~~~~-----~~~~~ 119 (481)
.|+|||+|.|||+|+..+-. .+-.|+|+|+. .+|+ ++.++ | ||.|.-+.. ...| +.-|... -..+.
T Consensus 11 pvvVIGgGLAGLsasn~iin--~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~ 88 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIIN--KGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGV 88 (477)
T ss_pred cEEEECCchhhhhhHHHHHh--cCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCc
Confidence 69999999999999999988 45569999965 6664 34332 2 333321111 1111 1111111 11222
Q ss_pred hhchhhHHhcCChHHHHHHHHh-cCCccee--ecCCeeeecCC-------ChHHHHHHHHHHHHhC------CCEEEcCc
Q 011610 120 KEFRGSFFSLHGPMDTMSWFSD-HGVELKT--EDDGRVFPVSD-------SSSSVIDCLLTEAKHR------GVVLQTGK 183 (481)
Q Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~-~Gi~~~~--~~~g~~~p~~~-------~a~~~~~~l~~~~~~~------Gv~i~~~~ 183 (481)
+.++..+ .. ...+.++|++. .++.+.. ...|.-.|++. ..-.++.+|...+++. -++|..++
T Consensus 89 ~eLm~~L-a~-~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~ns 166 (477)
T KOG2404|consen 89 PELMEKL-AA-NSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNS 166 (477)
T ss_pred HHHHHHH-Hh-cCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcc
Confidence 3333222 11 23466777765 4444331 22333333322 1345566666555432 37899999
Q ss_pred eEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC---------------------------ChhHHHHHHHcCC
Q 011610 184 VVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS---------------------------SQQGHRLAAQLGH 236 (481)
Q Consensus 184 ~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~---------------------------~g~g~~la~~~G~ 236 (481)
+|++|...+ +...+|...+ .++....+.++.||+|||+ +|+|.+|..++|.
T Consensus 167 kvv~il~n~-gkVsgVeymd-~sgek~~~~~~~VVlatGGf~ysd~~lLKey~pel~~lpTTNG~~~tGDgqk~l~klga 244 (477)
T KOG2404|consen 167 KVVDILRNN-GKVSGVEYMD-ASGEKSKIIGDAVVLATGGFGYSDKELLKEYGPELFGLPTTNGAQTTGDGQKMLMKLGA 244 (477)
T ss_pred eeeeeecCC-CeEEEEEEEc-CCCCccceecCceEEecCCcCcChHHHHHHhChhhccCCcCCCCcccCcHHHHHHHhCc
Confidence 999999665 5666777654 4455567899999999995 4667888888887
Q ss_pred CcccCCC
Q 011610 237 SIVDPVP 243 (481)
Q Consensus 237 ~i~~~~p 243 (481)
.++.+..
T Consensus 245 ~liDmd~ 251 (477)
T KOG2404|consen 245 SLIDMDQ 251 (477)
T ss_pred cccccce
Confidence 7665543
No 59
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.70 E-value=1.3e-16 Score=168.53 Aligned_cols=146 Identities=17% Similarity=0.181 Sum_probs=87.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC--CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG--KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~--~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (481)
.+|||+|||||+||+.||+.+++ .|.+|+|+|+. .+| ...||-.-.... ...+.+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~~d~iG-------~m~CnpsiGG~a------------kg~lvrE- 60 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHNLDTIG-------QMSCNPAIGGIA------------KGHLVRE- 60 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHH--cCCcEEEEeccccccc-------ccCCccccccch------------hhHHHHH-
Confidence 46999999999999999999999 79999999954 444 234542211100 0011111
Q ss_pred HhcCChHHHHHHHHhcCCcceeec--CC-eee-ec-CCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEE
Q 011610 127 FSLHGPMDTMSWFSDHGVELKTED--DG-RVF-PV-SDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLK 200 (481)
Q Consensus 127 l~~~~~~~~~~~~~~~Gi~~~~~~--~g-~~~-p~-~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~ 200 (481)
+...+ ..+..+.+..++.+.... .| .++ |. ..+...+...+.+.+.+. |++++ +.+|.++..++ +...+|.
T Consensus 61 idalG-g~~g~~~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~-grV~GV~ 137 (618)
T PRK05192 61 IDALG-GEMGKAIDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVEN-GRVVGVV 137 (618)
T ss_pred HHhcC-CHHHHHHhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecC-CEEEEEE
Confidence 11111 012223334444332211 01 111 11 123455667777777755 78885 66799988765 4556788
Q ss_pred EeecccCceEEEEcCeEEEccCCC
Q 011610 201 VEKRTMNLVECIEADYLLIASGSS 224 (481)
Q Consensus 201 ~~~~~~~~~~~i~ad~VIlAtG~~ 224 (481)
+.+ +..+.|+.||+|||.+
T Consensus 138 t~d-----G~~I~Ak~VIlATGTF 156 (618)
T PRK05192 138 TQD-----GLEFRAKAVVLTTGTF 156 (618)
T ss_pred ECC-----CCEEECCEEEEeeCcc
Confidence 776 6789999999999964
No 60
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=99.70 E-value=1.3e-15 Score=154.34 Aligned_cols=67 Identities=24% Similarity=0.370 Sum_probs=59.8
Q ss_pred cCCCceeEEecCCC-------CCCCCCcccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610 404 KGQFKDEFVTAGGV-------PLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL 476 (481)
Q Consensus 404 ~~~~~~a~vt~GGv-------~~~ei~~~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~ 476 (481)
..++++|+++++|+ +..++.+.|||+|.+||||||||+.+++|+| |||+||++||.+|+.++..+++
T Consensus 295 Ipgle~a~~~r~G~~~~~~~i~~p~~l~~~l~~k~~~~l~~AGqi~g~~Gy~------ea~a~G~~Ag~n~~~~~~g~~~ 368 (436)
T PRK05335 295 IPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAGQITGVEGYV------ESAASGLLAGINAARLALGKEP 368 (436)
T ss_pred ccchhceEEEeceEEeeccccCChhhCchhccccCCCCEEeeeeecCchHHH------HHHHHHHHHHHHHHHHhcCCCC
Confidence 45889999999999 7666677899999999999999999999888 9999999999999998876554
No 61
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=6.4e-16 Score=156.85 Aligned_cols=67 Identities=25% Similarity=0.377 Sum_probs=56.2
Q ss_pred cCCCceeEEecCC--CCCCCCCc----ccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610 404 KGQFKDEFVTAGG--VPLSEISL----NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL 476 (481)
Q Consensus 404 ~~~~~~a~vt~GG--v~~~ei~~----~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~ 476 (481)
..|++.|.+++-| |.-|-++| .|+|+|+++|||+|| .++|.|| |.-..| .|.+||.+||.++..+.+
T Consensus 325 ipGlEna~i~rpgYAIEYD~v~p~qL~~tLEtK~I~GLf~AG---QINGTtG-YEEAAa--QGliAGiNAal~~~~~~p 397 (621)
T COG0445 325 IPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAG---QINGTTG-YEEAAA--QGLIAGINAALKVQGKEP 397 (621)
T ss_pred CcccccceeeccceeeeecccChhhcccchhhceecceEEcc---cccCCch-hHHHHh--hhHHHHHHHHHHhcCCCC
Confidence 5688899999887 44444555 589999999999999 8999888 998888 999999999988877654
No 62
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.60 E-value=4.7e-14 Score=141.91 Aligned_cols=142 Identities=19% Similarity=0.205 Sum_probs=84.6
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEe-C-CCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-K-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~-~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
||+|||||.||+.||+.+|+ .|.+|+|+- + +.++ .-.||-.-... ....+.+. +..
T Consensus 1 DViVVGgG~AG~eAA~aaAr--~G~~V~Lit~~~d~i~-------~~~Cnpsigg~------------~kg~L~~E-ida 58 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR--MGAKVLLITHNTDTIG-------EMSCNPSIGGI------------AKGHLVRE-IDA 58 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TT--EEEEES-GGGTT---------SSSSEEEST------------THHHHHHH-HHH
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEeecccccc-------cccchhhhccc------------cccchhHH-Hhh
Confidence 89999999999999999999 799999994 3 3444 12343221110 11122211 233
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeee-----cCCChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEee
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFP-----VSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEK 203 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p-----~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~ 203 (481)
.+ ..+....+..++.+......+-++ ..-+...+...+.+.++. .+++|+ +.+|++|..++ +...+|.+.+
T Consensus 59 lg-g~m~~~aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~-~~v~GV~~~~ 135 (392)
T PF01134_consen 59 LG-GLMGRAADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVEN-GKVKGVVTKD 135 (392)
T ss_dssp TT--SHHHHHHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECT-TEEEEEEETT
T ss_pred hh-hHHHHHHhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecC-CeEEEEEeCC
Confidence 33 234445555555444432211111 112345566677777776 578885 67999999876 5667899886
Q ss_pred cccCceEEEEcCeEEEccCC
Q 011610 204 RTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 204 ~~~~~~~~i~ad~VIlAtG~ 223 (481)
+..+.||.||+|||.
T Consensus 136 -----g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 136 -----GEEIEADAVVLATGT 150 (392)
T ss_dssp -----SEEEEECEEEE-TTT
T ss_pred -----CCEEecCEEEEeccc
Confidence 789999999999996
No 63
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.56 E-value=9.2e-13 Score=135.87 Aligned_cols=166 Identities=24% Similarity=0.308 Sum_probs=99.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
++|||+||||||||++||+.|++ .|++|+|+|+ +.+|.+....+.. ... .+..-.......+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~--~G~~VlvlEk~~~~G~k~~~~~~~-----~~~-----~l~~l~~~~~~~i~---- 65 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK--AGLDVLVLEKGSEPGAKPCCGGGL-----SPR-----ALEELIPDFDEEIE---- 65 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH--cCCeEEEEecCCCCCCCcccccee-----chh-----hHHHhCCCcchhhh----
Confidence 57999999999999999999999 7899999995 5777544331110 000 00011110000000
Q ss_pred hcCChHHHHHHHHhcCCcceee---cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610 128 SLHGPMDTMSWFSDHGVELKTE---DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR 204 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~---~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~ 204 (481)
.......+ ++. +-..... ..++.. ....+.+.|.+.+++.|++++.+++|.++..++ ++.+.+...+
T Consensus 66 ~~v~~~~~--~~~--~~~~~~~~~~~~~y~v----~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~-~~~~~~~~~~- 135 (396)
T COG0644 66 RKVTGARI--YFP--GEKVAIEVPVGEGYIV----DRAKFDKWLAERAEEAGAELYPGTRVTGVIRED-DGVVVGVRAG- 135 (396)
T ss_pred eeeeeeEE--Eec--CCceEEecCCCceEEE----EhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeC-CcEEEEEEcC-
Confidence 00000000 000 1111111 112222 345667788999999999999999999999876 3444333332
Q ss_pred ccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcccCCCceeEee
Q 011610 205 TMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFTFK 249 (481)
Q Consensus 205 ~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~~~~p~l~~~~ 249 (481)
..+++|+.||.|+|..+ .+++++|.. ...|..+.+.
T Consensus 136 ----~~e~~a~~vI~AdG~~s---~l~~~lg~~--~~~~~~~~~~ 171 (396)
T COG0644 136 ----DDEVRAKVVIDADGVNS---ALARKLGLK--DRKPEDYAIG 171 (396)
T ss_pred ----CEEEEcCEEEECCCcch---HHHHHhCCC--CCChhheeEE
Confidence 36899999999999875 678888887 3444444433
No 64
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.53 E-value=4.2e-12 Score=126.95 Aligned_cols=287 Identities=17% Similarity=0.180 Sum_probs=151.4
Q ss_pred CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh-H-HHHHHHcC
Q 011610 158 SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ-G-HRLAAQLG 235 (481)
Q Consensus 158 ~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~-g-~~la~~~G 235 (481)
++....+++.+.+.++++|++|+++++|.+|+..+ +....|++++ +.++.+|+||+|.|.++. + ..+.+++|
T Consensus 169 TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~~~~~v~~~~-----g~~i~~~~vvlA~Grsg~dw~~~l~~K~G 242 (486)
T COG2509 169 TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIED-NEVLGVKLTK-----GEEIEADYVVLAPGRSGRDWFEMLHKKLG 242 (486)
T ss_pred ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-CceEEEEccC-----CcEEecCEEEEccCcchHHHHHHHHHhcC
Confidence 45678899999999999999999999999999876 4456788876 789999999999996653 3 34567789
Q ss_pred CCcccCCCceeEeeeCcc--ccccccCceeccEEEEEEecCccCCCCccc----eecCeEEEeccccchhhcccchhhHH
Q 011610 236 HSIVDPVPSLFTFKIADS--QLTELSGVSFPKVVAKLKLENVQRSSPYLT----QVGPMLVTHWGLSGPVILRLSAWGAR 309 (481)
Q Consensus 236 ~~i~~~~p~l~~~~~~~~--~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~----~~Ge~lft~~glsG~~il~lS~~~~~ 309 (481)
+.+. ..|.-+.++++-+ .+.+..-.-.. ..+..+.. +.+..+.. -.|.+.-..|. -|..+-+--++..+
T Consensus 243 v~~~-~~p~dIGVRvE~p~~vmd~~~~~~~~-~k~~~~t~--k~~~~VrtFCmcP~G~VV~e~~e-~g~~~vNG~S~~~r 317 (486)
T COG2509 243 VKMR-AKPFDIGVRVEHPQSVMDPHTRLGAA-PKFLYYTK--KYGDGVRTFCMCPGGEVVAENYE-DGFVVVNGHSYYAR 317 (486)
T ss_pred cccc-cCCeeEEEEEecchHhhCcccccccc-ceeEEEec--cCCCeEEEEEECCCCeEEeeecc-CceEEEcccchhcc
Confidence 9874 4477666666533 33332211110 00111110 00001111 12444433332 12222222222233
Q ss_pred HhHccCceeEEEEecC-CCCCHHHHHHHHHHHHHhchh-----hhhhhhCCCccchhHHHHHHHHHhcCCCCC---Cccc
Q 011610 310 YLFSSCYKGMLTVDFV-PDLHIEDMQSILSQHKIRFAK-----QKVLNSCPPEFCLVKRFWKYILGREGLSGD---TLWA 380 (481)
Q Consensus 310 ~~~~~~~~~~~~~d~~-p~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~ 380 (481)
.-.+.+--.-+.+++- |..+.-++...+.+..-.... |.+-+++.++ -+ .|..+ .+..+.|. .+..
T Consensus 318 ~s~NtNfAllV~i~~tep~~~~~ey~r~ia~lA~~lgGg~~i~Q~~gDf~~gR--rS--t~~ri-~~~~v~PTlk~v~pg 392 (486)
T COG2509 318 KSENTNFALLVTIEFTEPFEDGIEYGRSIARLATTLGGGKAIIQRVGDFLKGR--RS--TWSRI-GRVFVEPTLKPVTPG 392 (486)
T ss_pred cccCcceEEEEeccccCCCCchHHHHHHHHHHHHHhcCCcchHHHhhHHHcCC--cC--hHHHh-hcccccccccccccC
Confidence 3333332223333332 333444555555543332221 3333333331 00 01111 11111121 1111
Q ss_pred c----CCHHHHHHHHHHhccCeEEEcccCCCceeEEecCCCCCC------CCCcccccccCCCCeEEEEEEeecccCcch
Q 011610 381 S----VSNNSLISIARLLKHCTLEVAGKGQFKDEFVTAGGVPLS------EISLNTMESKIHPRLFFAGEVLNVDGVTGG 450 (481)
Q Consensus 381 ~----l~~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt~GGv~~~------ei~~~t~esk~~~gLy~~GE~ldv~g~~GG 450 (481)
+ |..--...|.+.|.++.=.+.|....+.- .-||.++ ++|.. +|+.++|||.+| |-.|.+||
T Consensus 393 Dls~~lP~~v~~~iiE~le~ldk~ipG~as~dtl---LygvE~k~ys~ri~~d~~--~~t~i~gLy~aG---dGAG~arg 464 (486)
T COG2509 393 DLSLALPDRVVEDLIEALENLDKVIPGVASDDTL---LYGVETKFYSVRIKVDED--LSTSIKGLYPAG---DGAGLARG 464 (486)
T ss_pred chhhhCCHHHHHHHHHHHHHhhccCCCcccccce---eeeeeeeeeeeeEeeccc--ceeeecceEEcc---ccccccch
Confidence 1 22344455666666665555454333211 1122221 23322 789999999999 88899998
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 011610 451 FNFQNAWSGGYIAGTSIGKL 470 (481)
Q Consensus 451 ynl~~A~~sG~~AG~~aa~~ 470 (481)
++-|-++|..|++.+++.
T Consensus 465 --I~~Aaa~Gi~~A~~i~~k 482 (486)
T COG2509 465 --IVSAAADGIKAAEGIARK 482 (486)
T ss_pred --hHHHhhhhHHHHHHHHHH
Confidence 445556999999998764
No 65
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.9e-13 Score=136.11 Aligned_cols=100 Identities=24% Similarity=0.355 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhcCCCCC-CccccCC----HHHHHHHHHHhccCeEEEcccCCCceeEEe--cCCCCCCCCCc----cccc
Q 011610 360 VKRFWKYILGREGLSGD-TLWASVS----NNSLISIARLLKHCTLEVAGKGQFKDEFVT--AGGVPLSEISL----NTME 428 (481)
Q Consensus 360 ~~~~~~~~~~~~~~~~~-~~~~~l~----~~~~~~l~~~l~~~~~~v~~~~~~~~a~vt--~GGv~~~ei~~----~t~e 428 (481)
|++.-+.|++..|+|.+ ...+.+| .+.-.+|+..+ .|.+.+.+- +-||..|-+|| .|+|
T Consensus 315 p~k~HqiwLEpEGlDs~~iYpqG~S~tlpee~Q~~lir~I----------pGLEn~~i~qP~YgVeYDyv~prQlk~sLe 384 (679)
T KOG2311|consen 315 PDKSHQIWLEPEGLDSDLIYPQGLSNTLPEELQLQLIRSI----------PGLENAEILQPGYGVEYDYVDPRQLKPSLE 384 (679)
T ss_pred ccccceeeecCcCCCCCcccccccccCCCHHHHHHHHHhc----------cCcccceeecccccceecccChHHcchhhh
Confidence 44433456666777743 2334444 33334454433 344555554 34788888888 6889
Q ss_pred ccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhh
Q 011610 429 SKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDAT 475 (481)
Q Consensus 429 sk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~ 475 (481)
-|+|+|||||| .++|.|| |.-..| .|.+||.+|+..+..+.
T Consensus 385 TkkV~GLF~AG---QINGTTG-YEEAAA--QGIiAGiNA~~~a~~~~ 425 (679)
T KOG2311|consen 385 TKKVQGLFFAG---QINGTTG-YEEAAA--QGIIAGINASLRASGKP 425 (679)
T ss_pred hhhccceEEee---eecCccc-hHHHHh--hhhHhhhhhhhhhcCCC
Confidence 99999999999 8999998 988887 99999999997765543
No 66
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.1e-12 Score=129.23 Aligned_cols=113 Identities=27% Similarity=0.417 Sum_probs=79.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCc-EEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~-V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
+.+||+||||||+||+||+++++ .+++ ++|+|+..+| |..+.+. . ...|+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~~~~g--------g~~~~~~-~-------venypg~--------- 54 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEGGEPG--------GQLTKTT-D-------VENYPGF--------- 54 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH--cCCCcEEEEecCCcC--------Cccccce-e-------ecCCCCC---------
Confidence 46999999999999999999999 7888 7777777666 2221111 0 0112111
Q ss_pred hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN 207 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~ 207 (481)
|.......+.+.+.+.+...|+++.. ..|.+++..+ +.|.|++++
T Consensus 55 ----------------------------~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~--~~F~v~t~~---- 99 (305)
T COG0492 55 ----------------------------PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG--GPFKVKTDK---- 99 (305)
T ss_pred ----------------------------ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC--ceEEEEECC----
Confidence 11123455666777777788888877 7788887653 388999886
Q ss_pred ceEEEEcCeEEEccCCCh
Q 011610 208 LVECIEADYLLIASGSSQ 225 (481)
Q Consensus 208 ~~~~i~ad~VIlAtG~~g 225 (481)
+. ++|+.||+|||...
T Consensus 100 -~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 100 -GT-YEAKAVIIATGAGA 115 (305)
T ss_pred -Ce-EEEeEEEECcCCcc
Confidence 44 99999999999754
No 67
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.47 E-value=2.4e-12 Score=124.50 Aligned_cols=147 Identities=20% Similarity=0.195 Sum_probs=100.9
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
.++||+||||||+|++||+.|++ +|++|+|+|+. .+|+.+. +++. ..+ ....
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~--~G~~V~liEk~~~~Ggg~~--~gg~--~~~-----------------~~~v---- 76 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK--AGLKVAVFERKLSFGGGMW--GGGM--LFN-----------------KIVV---- 76 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh--CCCeEEEEecCCCCCCccc--cCcc--ccc-----------------cccc----
Confidence 46899999999999999999999 89999999965 5553221 1110 000 0000
Q ss_pred hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCC-CeEEEEEeec--
Q 011610 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAG-RKFLLKVEKR-- 204 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~~~V~~~~~-- 204 (481)
..+...++++.|+++.....+.+. .++..+...|.+.+.+.|++++++++|.++..++ + ...+|.+...
T Consensus 77 ----~~~~~~~l~~~gv~~~~~~~g~~~---vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v 148 (257)
T PRK04176 77 ----QEEADEILDEFGIRYKEVEDGLYV---ADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPV 148 (257)
T ss_pred ----hHHHHHHHHHCCCCceeecCccee---ccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeC-CCcEEEEEEccccc
Confidence 124556788888887664434322 3467888899999999999999999999998765 3 3445554320
Q ss_pred ----ccCceEEEEcCeEEEccCCChhHHHH
Q 011610 205 ----TMNLVECIEADYLLIASGSSQQGHRL 230 (481)
Q Consensus 205 ----~~~~~~~i~ad~VIlAtG~~g~g~~l 230 (481)
.......++|+.||+|||+++.....
T Consensus 149 ~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~ 178 (257)
T PRK04176 149 EMAGLHVDPLTIEAKAVVDATGHDAEVVSV 178 (257)
T ss_pred cccCCCCCcEEEEcCEEEEEeCCCcHHHHH
Confidence 01113579999999999987754433
No 68
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.46 E-value=3.3e-12 Score=123.21 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=103.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
.++||+||||||+|++||+.|++ .|++|+||||. .+|++.. +++ +.+. . ...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~--~G~~V~vlEk~~~~Ggg~~--~gg-~~~~------------~------~~~---- 72 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK--NGLKVCVLERSLAFGGGSW--GGG-MLFS------------K------IVV---- 72 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCcccc--CCC-ccee------------c------ccc----
Confidence 46899999999999999999999 78999999965 5553211 111 1000 0 000
Q ss_pred hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCC--CeEEEEEeecc
Q 011610 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAG--RKFLLKVEKRT 205 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~--~~~~V~~~~~~ 205 (481)
..+..++++++|+++.....+.+.. +...+.+.|.+.+.+.|++++.++.|.++..++ + ...+|.++...
T Consensus 73 ----~~~~~~~l~~~gi~~~~~~~g~~~~---~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~-~~~~V~GVv~~~~~ 144 (254)
T TIGR00292 73 ----EKPAHEILDEFGIRYEDEGDGYVVA---DSAEFISTLASKALQAGAKIFNGTSVEDLITRD-DTVGVAGVVINWSA 144 (254)
T ss_pred ----cchHHHHHHHCCCCeeeccCceEEe---eHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CCCceEEEEeCCcc
Confidence 0134457778888876544444432 356788899999999999999999999998865 3 24456553200
Q ss_pred ---c---CceEEEEcCeEEEccCCChhHH-HHHHHcCCC
Q 011610 206 ---M---NLVECIEADYLLIASGSSQQGH-RLAAQLGHS 237 (481)
Q Consensus 206 ---~---~~~~~i~ad~VIlAtG~~g~g~-~la~~~G~~ 237 (481)
. .....++|+.||.|||.++.-. .+.++++..
T Consensus 145 v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~~~ 183 (254)
T TIGR00292 145 IELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKIVLE 183 (254)
T ss_pred ccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHcCcc
Confidence 0 1135799999999999776543 444555544
No 69
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.45 E-value=2.7e-11 Score=116.16 Aligned_cols=172 Identities=19% Similarity=0.211 Sum_probs=96.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC---CCCCCceEEecCCceeecc-----CCCcchhHHhhc------
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK---GKPLSKVKISGGGRCNVTN-----GHCADKMILAGH------ 114 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~---~~~g~k~~~sG~g~~n~~~-----~~~~~~~~~~~~------ 114 (481)
..+||||||+|.+|+.||.+|+. .|.+|+|+|. +.+|+....+-+|-.-+.. ....++.++..+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~--aG~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA 81 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELAD--AGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTA 81 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHh--cCceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhccc
Confidence 46899999999999999999999 8999999993 3566554444434221110 011222233221
Q ss_pred -cCCCChhchh---hHHhcCChHHHHHHHHhcCCccee-----ecCCe-------eeec---C-CCh----HHHHHHHHH
Q 011610 115 -YPRGHKEFRG---SFFSLHGPMDTMSWFSDHGVELKT-----EDDGR-------VFPV---S-DSS----SSVIDCLLT 170 (481)
Q Consensus 115 -~~~~~~~~~~---~~l~~~~~~~~~~~~~~~Gi~~~~-----~~~g~-------~~p~---~-~~a----~~~~~~l~~ 170 (481)
|.+...++.+ ..+-.|..-+..+|+.+.|..+.. +..|. ..|. + ... ..+++.+.+
T Consensus 82 ~FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~pFvr~~re 161 (552)
T COG3573 82 AFDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLEPFVRRLRE 161 (552)
T ss_pred ccCCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcccCCCCCCCcceEEeecCCcchhhHHHHHHHH
Confidence 1111111111 222344455667888888876553 22111 1111 0 112 234444544
Q ss_pred HHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec---------cc----CceEEEEcCeEEEccCC
Q 011610 171 EAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR---------TM----NLVECIEADYLLIASGS 223 (481)
Q Consensus 171 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~---------~~----~~~~~i~ad~VIlAtG~ 223 (481)
...+.-+++.+.++|..+...+ +...+|+-+-. .+ .+..+++|..||+++|+
T Consensus 162 ~~~~~~v~f~~RHrV~~l~~t~-grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGG 226 (552)
T COG3573 162 AQRRGRVTFRFRHRVDGLTTTG-GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGG 226 (552)
T ss_pred HHhCCceEEEeeeeccceEeeC-CeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCC
Confidence 4445558999999999998875 33233331100 00 11247899999999985
No 70
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.40 E-value=8.9e-12 Score=113.31 Aligned_cols=147 Identities=21% Similarity=0.239 Sum_probs=103.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
.+.||+||||||+||+||++||+ .|++|+|+|+ ..+|+.+. +||. +-| +-.+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk--~g~kV~i~E~~ls~GGG~w--~GGm--lf~-----------------~iVv---- 81 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGGGIW--GGGM--LFN-----------------KIVV---- 81 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHh--CCceEEEEEeecccCCccc--cccc--ccc-----------------eeee----
Confidence 35799999999999999999999 7999999995 47773221 0110 011 0111
Q ss_pred hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCC-CeEEEEEee---
Q 011610 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAG-RKFLLKVEK--- 203 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~~~V~~~~--- 203 (481)
.++..+++++.|+++...+++.+. -++..+...|..++.+.|++|+..+.|.++...+ + +..+|.++-
T Consensus 82 ----~~~a~~iL~e~gI~ye~~e~g~~v---~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~-~~rVaGvVvNWt~V 153 (262)
T COG1635 82 ----REEADEILDEFGIRYEEEEDGYYV---ADSAEFASKLAARALDAGAKIFNGVSVEDVIVRD-DPRVAGVVVNWTPV 153 (262)
T ss_pred ----cchHHHHHHHhCCcceecCCceEE---ecHHHHHHHHHHHHHhcCceeeecceEEEEEEec-CCceEEEEEecchh
Confidence 124456788999999888777554 3566777888888889999999999999998876 4 333444321
Q ss_pred ----cccCceEEEEcCeEEEccCCChhHHHHH
Q 011610 204 ----RTMNLVECIEADYLLIASGSSQQGHRLA 231 (481)
Q Consensus 204 ----~~~~~~~~i~ad~VIlAtG~~g~g~~la 231 (481)
..-+ ...++|+.||-|||.+..--.++
T Consensus 154 ~~~~lhvD-Pl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 154 QMAGLHVD-PLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred hhcccccC-cceeeEEEEEeCCCCchHHHHHH
Confidence 0001 24799999999999876543443
No 71
>PLN02661 Putative thiazole synthesis
Probab=99.40 E-value=6e-12 Score=124.95 Aligned_cols=167 Identities=19% Similarity=0.296 Sum_probs=108.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
.++||+|||||++|++||+.|++. +|++|+|||++ .+| +|.| .... +...+ +.+.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~G-------GG~~--~gg~------l~~~~------vv~~-- 146 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPG-------GGAW--LGGQ------LFSAM------VVRK-- 146 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCcccc-------ccee--eCcc------ccccc------cccc--
Confidence 458999999999999999999973 48999999975 444 2333 1100 00011 1111
Q ss_pred hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHH-hCCCEEEcCceEEEEEecCCCCeEEEEEee---
Q 011610 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAK-HRGVVLQTGKVVTTASSDNAGRKFLLKVEK--- 203 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~-~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~--- 203 (481)
...++++++|+++... ++ |+...++..+...|.+.+. +.|++++.++.|.++..++ +...+|.+..
T Consensus 147 ------~a~e~LeElGV~fd~~-dg--y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-grVaGVVvnw~~v 216 (357)
T PLN02661 147 ------PAHLFLDELGVPYDEQ-EN--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-DRVGGVVTNWALV 216 (357)
T ss_pred ------HHHHHHHHcCCCcccC-CC--eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-CEEEEEEeecchh
Confidence 1235778889987544 23 3344456677778887665 4789999999999999875 4555665421
Q ss_pred ---cccC---ceEEEEcCeEEEccCCCh----hHHHHHHHcCCCcccCCCceeEeeeC
Q 011610 204 ---RTMN---LVECIEADYLLIASGSSQ----QGHRLAAQLGHSIVDPVPSLFTFKIA 251 (481)
Q Consensus 204 ---~~~~---~~~~i~ad~VIlAtG~~g----~g~~la~~~G~~i~~~~p~l~~~~~~ 251 (481)
.... ....++|++||+|||+++ .+++...++|+ .++.|.+.++...
T Consensus 217 ~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~~~~~~~g~--~~~~pg~~~~~~~ 272 (357)
T PLN02661 217 AQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM--IDSVPGMKALDMN 272 (357)
T ss_pred hhccCCCCccceeEEECCEEEEcCCCCCcchhhhhhcccccCC--ccCCCCccccchh
Confidence 0000 124799999999999775 33444455666 3446777777655
No 72
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.40 E-value=6e-12 Score=132.41 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=103.8
Q ss_pred CCCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcc----------h------
Q 011610 45 THTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCAD----------K------ 108 (481)
Q Consensus 45 ~~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~----------~------ 108 (481)
-+.+.++||+|||||.+|+++|++|++..+|.+|+|||++.++.......+|.+. ....... .
T Consensus 19 L~~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~-~~~~~~~~~~~~~g~~~~~~l~~~ 97 (460)
T TIGR03329 19 LVGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCML-TWSTKFFTLKRLFGEAEAARLVKA 97 (460)
T ss_pred CCCCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCcccc-ccccCHHHHHHhhCHHHHHHHHHH
Confidence 3445678999999999999999999994348999999987765321111112111 0100000 0
Q ss_pred --------hHHhhccCCCChhchh-hHHh-cCCh------HHHHHHHHhcCCcc-eee--------------cCCeeeec
Q 011610 109 --------MILAGHYPRGHKEFRG-SFFS-LHGP------MDTMSWFSDHGVEL-KTE--------------DDGRVFPV 157 (481)
Q Consensus 109 --------~~~~~~~~~~~~~~~~-~~l~-~~~~------~~~~~~~~~~Gi~~-~~~--------------~~g~~~p~ 157 (481)
.++...+.- ...+.. ..+. ..+. .+..+.+++.|++. ..- ..+.++|.
T Consensus 98 ~~~~~~~~~~l~~~~~i-~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~~ 176 (460)
T TIGR03329 98 SEQAVLEIAAFCEQHNI-DAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSPV 176 (460)
T ss_pred HHHHHHHHHHHHHHhCC-CCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeCC
Confidence 000000000 000000 0000 1111 12233445566531 110 01122332
Q ss_pred C--CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610 158 S--DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 235 (481)
Q Consensus 158 ~--~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G 235 (481)
. .++..++..|.+.+++.|++|+.+++|++++. + +.+.|++.+ ..+.||.||+|+|++.. .++..++
T Consensus 177 ~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~~~~v~t~~------g~v~A~~VV~Atga~s~--~l~~~~~ 245 (460)
T TIGR03329 177 AASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-G--QPAVVRTPD------GQVTADKVVLALNAWMA--SHFPQFE 245 (460)
T ss_pred CeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-C--CceEEEeCC------cEEECCEEEEccccccc--ccChhhc
Confidence 2 25678889999999999999999999999974 2 456777764 46999999999998753 3444555
Q ss_pred CCccc
Q 011610 236 HSIVD 240 (481)
Q Consensus 236 ~~i~~ 240 (481)
..+.+
T Consensus 246 ~~~~p 250 (460)
T TIGR03329 246 RSIAI 250 (460)
T ss_pred CeEEE
Confidence 55443
No 73
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.39 E-value=4.5e-12 Score=132.62 Aligned_cols=158 Identities=19% Similarity=0.199 Sum_probs=96.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
...+|+|||||++||+||.+|++ .|++|+|+|+. .+| |.|+.+.....+...+..........++.. +
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~~vG--------G~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~-L 77 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQVG--------GLWVYTPKSESDPLSLDPTRSIVHSSVYES-L 77 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCCCCc--------ceeecCCCcCCCccccCCCCcccchhhhhh-h
Confidence 45899999999999999999999 78999999965 565 677665432111000000000000111111 1
Q ss_pred hcCChHHHHHHHHhcCCcce--eecCCeeeecCCChHHHHHHHHHHHHhCCCE--EEcCceEEEEEecCCCCeEEEEEee
Q 011610 128 SLHGPMDTMSWFSDHGVELK--TEDDGRVFPVSDSSSSVIDCLLTEAKHRGVV--LQTGKVVTTASSDNAGRKFLLKVEK 203 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~--~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~~~~~~~V~~~~ 203 (481)
....+.+.+.|..-...+.. .......|| ....+.++|.+.+++.|+. |+++++|+++...+ +.|.|++.+
T Consensus 78 ~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp---~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~ 152 (461)
T PLN02172 78 RTNLPRECMGYRDFPFVPRFDDESRDSRRYP---SHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKN 152 (461)
T ss_pred hccCCHhhccCCCCCCCcccccccCcCCCCC---CHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEc
Confidence 22223333332211111100 011234565 4577999999999999988 99999999998764 779888763
Q ss_pred cccCceEEEEcCeEEEccCC
Q 011610 204 RTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 204 ~~~~~~~~i~ad~VIlAtG~ 223 (481)
..+...+..+|+||+|||.
T Consensus 153 -~~~~~~~~~~d~VIvAtG~ 171 (461)
T PLN02172 153 -SGGFSKDEIFDAVVVCNGH 171 (461)
T ss_pred -CCCceEEEEcCEEEEeccC
Confidence 1111235689999999995
No 74
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.38 E-value=7.1e-12 Score=126.45 Aligned_cols=174 Identities=24% Similarity=0.319 Sum_probs=100.5
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeecc-CCCc-c-------h----hHHhhccCCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTN-GHCA-D-------K----MILAGHYPRG 118 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~-~~~~-~-------~----~~~~~~~~~~ 118 (481)
||+|||||++|+++|++|++ +|++|+|||++.++........|.+.... .... . . ..+...+...
T Consensus 1 DvvIIGaGi~G~~~A~~La~--~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 78 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR--RGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIP 78 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH--TTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CEEEECcCHHHHHHHHHHHH--CCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcc
Confidence 89999999999999999999 89999999987665311100011111110 0000 0 0 0111111111
Q ss_pred Chhchh-hHHhcC-Ch------HHHHHHHHhcCCcceeec----------------CCeeeecC--CChHHHHHHHHHHH
Q 011610 119 HKEFRG-SFFSLH-GP------MDTMSWFSDHGVELKTED----------------DGRVFPVS--DSSSSVIDCLLTEA 172 (481)
Q Consensus 119 ~~~~~~-~~l~~~-~~------~~~~~~~~~~Gi~~~~~~----------------~g~~~p~~--~~a~~~~~~l~~~~ 172 (481)
.. +.. ..+... +. +...+..+..++.+...+ .+..+|.. .+...+++.|.+.+
T Consensus 79 ~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~ 157 (358)
T PF01266_consen 79 VG-FRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEA 157 (358)
T ss_dssp CE-EEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHH
T ss_pred cc-cccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHH
Confidence 10 000 000000 11 123344555665322110 01112211 13688999999999
Q ss_pred HhCCCEEEcCceEEEEEecCCCCeEE-EEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 173 KHRGVVLQTGKVVTTASSDNAGRKFL-LKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 173 ~~~Gv~i~~~~~V~~i~~~~~~~~~~-V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
++.|++|+.+++|++|..++ +.+. |++.+ +. +.||.||+|+|.+. ..++..++..+
T Consensus 158 ~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~-----g~-i~ad~vV~a~G~~s--~~l~~~~~~~~ 214 (358)
T PF01266_consen 158 QRAGVEIRTGTEVTSIDVDG--GRVTGVRTSD-----GE-IRADRVVLAAGAWS--PQLLPLLGLDL 214 (358)
T ss_dssp HHTT-EEEESEEEEEEEEET--TEEEEEEETT-----EE-EEECEEEE--GGGH--HHHHHTTTTSS
T ss_pred HHhhhhccccccccchhhcc--cccccccccc-----cc-cccceeEecccccc--eeeeecccccc
Confidence 99999999999999999876 5665 99886 55 99999999999865 45778888743
No 75
>PRK06116 glutathione reductase; Validated
Probab=99.38 E-value=1.7e-10 Score=121.20 Aligned_cols=138 Identities=22% Similarity=0.289 Sum_probs=79.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (481)
.+|||+||||||+|++||+.|++ .|++|+|+|++.+| |.| .|..|.+++.+... ..+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~--~G~~V~liE~~~~G--------G~c--~n~gciP~k~l~~~-----~~~~----- 60 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAM--YGAKVALIEAKRLG--------GTC--VNVGCVPKKLMWYG-----AQIA----- 60 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccchh--------hhh--hccCcchHHHHHHH-----HHHH-----
Confidence 36999999999999999999999 79999999987666 777 56666553222110 0000
Q ss_pred cCChHHHHHHHHhcCCcceeec--CCeeeec-CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecc
Q 011610 129 LHGPMDTMSWFSDHGVELKTED--DGRVFPV-SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRT 205 (481)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~--~g~~~p~-~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 205 (481)
..+..+....|+...... ...+... ......+.+.+.+.+.+.||+++.++ ++.+. . . .|+++
T Consensus 61 ----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~--~--~--~v~~~--- 126 (450)
T PRK06116 61 ----EAFHDYAPGYGFDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVD--A--H--TVEVN--- 126 (450)
T ss_pred ----HHHHhHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc--C--C--EEEEC---
Confidence 011111222333211000 0000000 00011223344555677899998774 44442 2 3 34443
Q ss_pred cCceEEEEcCeEEEccCCCh
Q 011610 206 MNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 206 ~~~~~~i~ad~VIlAtG~~g 225 (481)
+..+++|+||+|||+.+
T Consensus 127 ---g~~~~~d~lViATGs~p 143 (450)
T PRK06116 127 ---GERYTADHILIATGGRP 143 (450)
T ss_pred ---CEEEEeCEEEEecCCCC
Confidence 56799999999999764
No 76
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.37 E-value=1.8e-11 Score=131.08 Aligned_cols=182 Identities=17% Similarity=0.186 Sum_probs=104.0
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceE--Ee----cCCceeeccCC----CcchhHHhhccCC
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVK--IS----GGGRCNVTNGH----CADKMILAGHYPR 117 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~--~s----G~g~~n~~~~~----~~~~~~~~~~~~~ 117 (481)
+..+||+|||||+.|+++|+.|++ +|++|+|||++.++.... .+ ++.+....... +.....+...+
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~--rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~-- 79 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCAL--RGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRI-- 79 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHH--cCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHh--
Confidence 346999999999999999999999 799999999876552111 11 11111000000 00000001110
Q ss_pred CChhchh---hH---HhcCCh---HHHHHHHHhcCCcceee----------------cCCeeeecC-CChHHHHHHHHHH
Q 011610 118 GHKEFRG---SF---FSLHGP---MDTMSWFSDHGVELKTE----------------DDGRVFPVS-DSSSSVIDCLLTE 171 (481)
Q Consensus 118 ~~~~~~~---~~---l~~~~~---~~~~~~~~~~Gi~~~~~----------------~~g~~~p~~-~~a~~~~~~l~~~ 171 (481)
.++++. .+ +..... ....++....|++...- ..+..||.. .++..+..++...
T Consensus 80 -a~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~ 158 (546)
T PRK11101 80 -ARHCVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLD 158 (546)
T ss_pred -chHhhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHH
Confidence 000000 00 000000 12233445566543210 112334421 2456778888888
Q ss_pred HHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 172 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
+.++|++++++++|+++..++ +..++|++.+..++....|+|+.||+|+|.|.+ .+++..|.+
T Consensus 159 A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~--~l~~~~g~~ 221 (546)
T PRK11101 159 AKEHGAQILTYHEVTGLIREG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ--HIAEYADLR 221 (546)
T ss_pred HHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEcCCCcEEEEECCEEEECCChhHH--HHHHhcCCC
Confidence 999999999999999998765 344567764322233467999999999999874 466666643
No 77
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.36 E-value=1.9e-11 Score=125.95 Aligned_cols=178 Identities=17% Similarity=0.241 Sum_probs=101.6
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCc--eeeccCCCcchhHH-------hhccCCC-
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGR--CNVTNGHCADKMIL-------AGHYPRG- 118 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~--~n~~~~~~~~~~~~-------~~~~~~~- 118 (481)
++||+|||||++|+++|++|+++.+|.+|+|+|+.. ++........|. +.+..........+ ...+...
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 589999999999999999999943389999999763 543211111111 11101000000000 0000000
Q ss_pred Chhch--hhHHhcCChH------HHHHHHHhcCCcceee--------------cCCeeeecCC--ChHHHHHHHHHHHHh
Q 011610 119 HKEFR--GSFFSLHGPM------DTMSWFSDHGVELKTE--------------DDGRVFPVSD--SSSSVIDCLLTEAKH 174 (481)
Q Consensus 119 ~~~~~--~~~l~~~~~~------~~~~~~~~~Gi~~~~~--------------~~g~~~p~~~--~a~~~~~~l~~~~~~ 174 (481)
...+. ..++-..+.+ ...++....|++...- ..+..+|... +...+.++|.+.+++
T Consensus 82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~ 161 (393)
T PRK11728 82 GIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQA 161 (393)
T ss_pred CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHHh
Confidence 00000 0000001111 1223344455542210 1122333321 467889999999999
Q ss_pred CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 175 RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 175 ~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
.|++++++++|.++..++ +.+.|.+.+ .++.||.||+|+|.+. ..+++.+|..
T Consensus 162 ~Gv~i~~~~~V~~i~~~~--~~~~V~~~~------g~i~ad~vV~A~G~~s--~~l~~~~g~~ 214 (393)
T PRK11728 162 RGGEIRLGAEVTALDEHA--NGVVVRTTQ------GEYEARTLINCAGLMS--DRLAKMAGLE 214 (393)
T ss_pred CCCEEEcCCEEEEEEecC--CeEEEEECC------CEEEeCEEEECCCcch--HHHHHHhCCC
Confidence 999999999999998764 557777764 3799999999999876 3567777764
No 78
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.33 E-value=6.5e-11 Score=122.69 Aligned_cols=74 Identities=23% Similarity=0.317 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
+...++..|.+.+++.|++++++++|++++.++ +.+.+.+.+...+.+.+++||+||+|+|.+. ..++..+|..
T Consensus 195 ~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s--~~l~~~~~~~ 268 (410)
T PRK12409 195 DIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS--RALAAMLGDR 268 (410)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCCCCccceEecCEEEECCCcCh--HHHHHHhCCC
Confidence 456778889999999999999999999998754 5566655430000023689999999999886 3566666754
No 79
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.33 E-value=3.6e-10 Score=119.02 Aligned_cols=139 Identities=24% Similarity=0.297 Sum_probs=78.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (481)
..|||+||||||+|++||..|++ .|.+|+|+|+..+| |.| .|..+.+.+.+.. ..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~--~G~~V~liE~~~~G--------G~c--~~~gciP~k~l~~-----------~~-- 57 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ--LGLKVAIVEKEKLG--------GTC--LNRGCIPSKALLH-----------AA-- 57 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH--CCCcEEEEeccccc--------cce--eecccCCcHHHHH-----------hh--
Confidence 46999999999999999999999 79999999987665 667 3444444222111 00
Q ss_pred cCChHHHHHHHHhcCCcceeecCCeeeec-CCC----hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEee
Q 011610 129 LHGPMDTMSWFSDHGVELKTEDDGRVFPV-SDS----SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEK 203 (481)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~-~~~----a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~ 203 (481)
...+....+..+|+..... ...++. ... ...+...+...+++.||+++.++ ++.+ +. ..+.|...+
T Consensus 58 --~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~--~~--~~~~v~~~~ 128 (462)
T PRK06416 58 --ERADEARHSEDFGIKAENV--GIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLV--DP--NTVRVMTED 128 (462)
T ss_pred --hHHHHHHHHHhcCcccCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--cC--CEEEEecCC
Confidence 0001111122333321100 000000 000 01122234556677899998774 4333 22 445554321
Q ss_pred cccCceEEEEcCeEEEccCCCh
Q 011610 204 RTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 204 ~~~~~~~~i~ad~VIlAtG~~g 225 (481)
++..+.+|+||+|||+.+
T Consensus 129 ----~~~~~~~d~lViAtGs~p 146 (462)
T PRK06416 129 ----GEQTYTAKNIILATGSRP 146 (462)
T ss_pred ----CcEEEEeCEEEEeCCCCC
Confidence 136799999999999865
No 80
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.33 E-value=3.3e-11 Score=123.51 Aligned_cols=68 Identities=19% Similarity=0.294 Sum_probs=55.1
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
++..+...|.+.+++.|++++.+++|+++..++ +.+.|.+.+ .++.||.||+|+|++. ..+++.+|..
T Consensus 143 ~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~~v~~~~------~~i~a~~vV~aaG~~~--~~l~~~~g~~ 210 (380)
T TIGR01377 143 YAEKALRALQELAEAHGATVRDGTKVVEIEPTE--LLVTVKTTK------GSYQANKLVVTAGAWT--SKLLSPLGIE 210 (380)
T ss_pred cHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeEEEEeCC------CEEEeCEEEEecCcch--HHHhhhcccC
Confidence 456788889999999999999999999998764 567777663 4799999999999876 3577777755
No 81
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.33 E-value=3.5e-11 Score=126.61 Aligned_cols=69 Identities=12% Similarity=0.276 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHHh----CC--CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHH
Q 011610 160 SSSSVIDCLLTEAKH----RG--VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQ 233 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~----~G--v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~ 233 (481)
+...+...|.+.+++ .| ++|+++++|++|+.++ ++.+.|++.+ .+++||+||+|+|++. ..+++.
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~------G~i~A~~VVvaAG~~S--~~La~~ 279 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR------GEIRARFVVVSACGYS--LLFAQK 279 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC------CEEEeCEEEECcChhH--HHHHHH
Confidence 567788999999988 77 8899999999999874 4678888874 4799999999999887 568888
Q ss_pred cCCC
Q 011610 234 LGHS 237 (481)
Q Consensus 234 ~G~~ 237 (481)
+|+.
T Consensus 280 ~Gi~ 283 (497)
T PTZ00383 280 MGYG 283 (497)
T ss_pred hCCC
Confidence 8763
No 82
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.33 E-value=2.1e-11 Score=124.80 Aligned_cols=186 Identities=17% Similarity=0.129 Sum_probs=102.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccC---CCc-------chhHHhhccCC-
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNG---HCA-------DKMILAGHYPR- 117 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~---~~~-------~~~~~~~~~~~- 117 (481)
+++||+|||||++|+++|++|++ .|.+|+|||++..+.....++ +...+... ... ...++...+..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~--~g~~V~lie~~~~~~~~~ss~-~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~ 78 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLAR--RGLRVLGLDRFMPPHQQGSSH-GDTRIIRHAYGEGPAYVPLVLRAQELWRELERE 78 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHH--CCCeEEEEecccCCCCCcCcC-CcceEEEeeccCCchhhHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999 789999999876542111111 11111100 000 00011111100
Q ss_pred -CChhchh--hH-HhcCC---hHHHHHHHHhcCCcceee-----------------cCCeeeecC--CChHHHHHHHHHH
Q 011610 118 -GHKEFRG--SF-FSLHG---PMDTMSWFSDHGVELKTE-----------------DDGRVFPVS--DSSSSVIDCLLTE 171 (481)
Q Consensus 118 -~~~~~~~--~~-l~~~~---~~~~~~~~~~~Gi~~~~~-----------------~~g~~~p~~--~~a~~~~~~l~~~ 171 (481)
....+.. .+ +..-. .....+.+++.|++...- ..+.++|.. ..+..++..+.+.
T Consensus 79 ~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~ 158 (376)
T PRK11259 79 SGEPLFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRL 158 (376)
T ss_pred hCCccEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHH
Confidence 0000000 00 00000 112233444555443210 011222221 1456778888888
Q ss_pred HHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcccCCCceeE
Q 011610 172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPSLFT 247 (481)
Q Consensus 172 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~~~~p~l~~ 247 (481)
+.+.|++++++++|+++..++ +.+.|++++ + .+.||.||+|+|++.. .++..+...+.+.+..++.
T Consensus 159 ~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~-----g-~~~a~~vV~A~G~~~~--~l~~~~~~~i~~~~~~~~~ 224 (376)
T PRK11259 159 AREAGAELLFNEPVTAIEADG--DGVTVTTAD-----G-TYEAKKLVVSAGAWVK--DLLPPLELPLTPVRQVLAW 224 (376)
T ss_pred HHHCCCEEECCCEEEEEEeeC--CeEEEEeCC-----C-EEEeeEEEEecCcchh--hhcccccCCceEEEEEEEE
Confidence 888999999999999998765 567777764 3 7999999999998753 4544445444443333333
No 83
>PRK09897 hypothetical protein; Provisional
Probab=99.32 E-value=3.1e-11 Score=127.73 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=105.8
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCceEEec--CCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISG--GGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG--~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (481)
+++|+|||||++|+++|.+|.+.....+|+|+|+ ..+|+++..+. ...|+.+|..... ..... ..
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~-------~p~~~-----~~ 68 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIE-------IPPIY-----CT 68 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccc-------cCCCh-----HH
Confidence 3689999999999999999987444579999996 57887655433 3455555543211 11111 12
Q ss_pred HhcCChHHHHHHHHhcCCcceeecCCeeeecCCCh---HHHHHHHHHHHHhCC--CEEEcCceEEEEEecCCCCeEEEEE
Q 011610 127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSS---SSVIDCLLTEAKHRG--VVLQTGKVVTTASSDNAGRKFLLKV 201 (481)
Q Consensus 127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a---~~~~~~l~~~~~~~G--v~i~~~~~V~~i~~~~~~~~~~V~~ 201 (481)
+..|...+...++.+.+++....+.+.++|....+ .++.+.+.+.+.+.| +.++.+++|+++..++ +.+.|++
T Consensus 69 f~~Wl~~~~~~~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t 146 (534)
T PRK09897 69 YLEWLQKQEDSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLAT 146 (534)
T ss_pred HHHHhhhhhHHHHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEE
Confidence 23333334444566677766555556788877665 455556666677777 7888899999998765 6677776
Q ss_pred eecccCceEEEEcCeEEEccCC
Q 011610 202 EKRTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 202 ~~~~~~~~~~i~ad~VIlAtG~ 223 (481)
.+ ++..+.+|.||+|||.
T Consensus 147 ~~----gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 147 NQ----DLPSETFDLAVIATGH 164 (534)
T ss_pred CC----CCeEEEcCEEEECCCC
Confidence 53 1367999999999996
No 84
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.31 E-value=9.7e-12 Score=129.48 Aligned_cols=162 Identities=21% Similarity=0.303 Sum_probs=93.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
++|||+||||||+|++||+.|++ .|++|+|||+. .++.+.. + +|++.. + ..+ .+...+....+ +
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~--~G~~V~llEr~~~~g~k~~-~-gg~l~~-~--~~e--~l~~~~~~~~~------~ 68 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAR--EGAQVLVIERGNSAGAKNV-T-GGRLYA-H--SLE--HIIPGFADSAP------V 68 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHh--CCCeEEEEEcCCCCCCccc-c-cceech-h--hHH--HHhhhhhhcCc------c
Confidence 46999999999999999999999 79999999965 5554432 1 222211 1 000 11111100000 0
Q ss_pred hcCChHHHHHHHHhcCC---cceee----cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEE
Q 011610 128 SLHGPMDTMSWFSDHGV---ELKTE----DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLK 200 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi---~~~~~----~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~ 200 (481)
......+...++...+. .+... .....| ......+.+.|.+.+++.|++++.+++|+++..++ +..+.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~ 145 (428)
T PRK10157 69 ERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSY--SVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVE 145 (428)
T ss_pred cceeeeeeEEEEcCCCceeeccccccccCCCCCce--eeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEE
Confidence 00000000001111110 00000 000011 12345667788889999999999999999998764 3333444
Q ss_pred EeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 201 VEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 201 ~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
++ +.++.|+.||+|+|.++ .+++++|+.
T Consensus 146 ~~------g~~i~A~~VI~A~G~~s---~l~~~lgl~ 173 (428)
T PRK10157 146 AD------GDVIEAKTVILADGVNS---ILAEKLGMA 173 (428)
T ss_pred cC------CcEEECCEEEEEeCCCH---HHHHHcCCC
Confidence 33 46799999999999864 578888876
No 85
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.31 E-value=7.8e-11 Score=124.12 Aligned_cols=75 Identities=12% Similarity=0.225 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
+...+..+|.+.+++.|++|+++++|++++.++ ++.|.|++.+...+.+.+++||+||+|+|++. ..+++.+|+.
T Consensus 176 dp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s--~~La~~~Gi~ 250 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA--LPLLQKSGIP 250 (483)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCeEEEEEeeccCCceEEEECCEEEECCCcch--HHHHHHcCCC
Confidence 567889999999999999999999999998754 35576665421222234799999999999987 5688888875
No 86
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.31 E-value=8.8e-11 Score=119.78 Aligned_cols=181 Identities=22% Similarity=0.253 Sum_probs=105.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCce--EEecCCcee--eccCCCcc---------hhHHhhc
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKV--KISGGGRCN--VTNGHCAD---------KMILAGH 114 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~--~~sG~g~~n--~~~~~~~~---------~~~~~~~ 114 (481)
+++||+|||||+.|+++|++|++..++++|+|+||. .++... .-||-+.+- .+...... ..++.++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 478999999999999999999996566999999965 555311 112211111 11110000 0011111
Q ss_pred cCCCChhchhhHHhcCChH------HHHHHHHhcCCc-ceeec---------------CC-eeeecC--CChHHHHHHHH
Q 011610 115 YPRGHKEFRGSFFSLHGPM------DTMSWFSDHGVE-LKTED---------------DG-RVFPVS--DSSSSVIDCLL 169 (481)
Q Consensus 115 ~~~~~~~~~~~~l~~~~~~------~~~~~~~~~Gi~-~~~~~---------------~g-~~~p~~--~~a~~~~~~l~ 169 (481)
++..-... ..+.-.++.+ ...+-+...|+. ....+ .+ ...|.+ .....+..+|.
T Consensus 82 ~~~~f~~~-g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~ 160 (429)
T COG0579 82 LGIPFINC-GKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA 160 (429)
T ss_pred hCCccccc-CeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence 11000000 0001112211 122223345555 11100 01 111211 24567888999
Q ss_pred HHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEE-EEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 170 TEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVEC-IEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 170 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~-i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
+.++++|++++++++|++|++.+ ++.+.+.+.+ +++ ++|+.||.|.|... ..+++..|...
T Consensus 161 e~a~~~g~~i~ln~eV~~i~~~~-dg~~~~~~~~-----g~~~~~ak~Vin~AGl~A--d~la~~~g~~~ 222 (429)
T COG0579 161 EEAQANGVELRLNTEVTGIEKQS-DGVFVLNTSN-----GEETLEAKFVINAAGLYA--DPLAQMAGIPE 222 (429)
T ss_pred HHHHHcCCEEEecCeeeEEEEeC-CceEEEEecC-----CcEEEEeeEEEECCchhH--HHHHHHhCCCc
Confidence 99999999999999999999886 3455666654 333 99999999999766 57899999876
No 87
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.30 E-value=1.1e-12 Score=136.58 Aligned_cols=158 Identities=28% Similarity=0.302 Sum_probs=31.8
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
||||||||++|++||+.+++ .|.+|+|||+. .+|+.. +.++.+.+.... .. . .......
T Consensus 1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~lGG~~--t~~~~~~~~~~~--~~-~----------~~~~gi~--- 60 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGFLGGMA--TSGGVSPFDGNH--DE-D----------QVIGGIF--- 60 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSSSTGGG--GGSSS-EETTEE--HH-H----------HHHHHHH---
T ss_pred CEEEECccHHHHHHHHHHHH--CCCEEEEEECCccCCCcc--eECCcCChhhcc--hh-h----------ccCCCHH---
Confidence 89999999999999999999 79999999965 566422 111222111100 00 0 0000100
Q ss_pred ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE 210 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~ 210 (481)
.++.+.+...+-.......+..-....+...+...|.+.+.+.|++|++++.|.++..++ +....|++.+ .. +..
T Consensus 61 --~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~-~~i~~V~~~~-~~-g~~ 135 (428)
T PF12831_consen 61 --REFLNRLRARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG-GRITGVIVET-KS-GRK 135 (428)
T ss_dssp --HHHHHST-----------------------------------------------------------------------
T ss_pred --HHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc-cc-ccc
Confidence 111111111110000000000000012233344556666677899999999999999875 4555677763 12 357
Q ss_pred EEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 211 CIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 211 ~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
++.|+.||.|||- + .++...|.+.
T Consensus 136 ~i~A~~~IDaTG~-g---~l~~~aG~~~ 159 (428)
T PF12831_consen 136 EIRAKVFIDATGD-G---DLAALAGAPY 159 (428)
T ss_dssp ----------------------------
T ss_pred ccccccccccccc-c---cccccccccc
Confidence 8999999999993 2 3455555543
No 88
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.29 E-value=9.6e-11 Score=121.60 Aligned_cols=70 Identities=24% Similarity=0.225 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
++..+...|.+.+++.|++|+++++|++++.++ +..+.|+++ +.++.||+||+|+|.+. ..++..+|+++
T Consensus 199 ~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~------~~~~~a~~VV~a~G~~~--~~l~~~~g~~~ 268 (416)
T PRK00711 199 DCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTG------GGVITADAYVVALGSYS--TALLKPLGVDI 268 (416)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeC------CcEEeCCEEEECCCcch--HHHHHHhCCCc
Confidence 566788899999999999999999999998765 333456665 35799999999999876 35666777653
No 89
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.29 E-value=1.1e-10 Score=120.81 Aligned_cols=76 Identities=20% Similarity=0.135 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCccc
Q 011610 161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVD 240 (481)
Q Consensus 161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~~ 240 (481)
...+...|.+.+.+.|++++.+++|++++..+++..+.|++++ ..+.|++||+|+|++. ..+++.+|.++ +
T Consensus 182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~------g~i~a~~vVvaagg~~--~~l~~~~g~~~-~ 252 (407)
T TIGR01373 182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR------GFIGAKKVGVAVAGHS--SVVAAMAGFRL-P 252 (407)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC------ceEECCEEEECCChhh--HHHHHHcCCCC-C
Confidence 4566778889999999999999999999764313345677764 3699999999999876 35666777763 4
Q ss_pred CCCce
Q 011610 241 PVPSL 245 (481)
Q Consensus 241 ~~p~l 245 (481)
..|..
T Consensus 253 ~~~~~ 257 (407)
T TIGR01373 253 IESHP 257 (407)
T ss_pred cCccc
Confidence 44443
No 90
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.29 E-value=8.7e-10 Score=114.28 Aligned_cols=49 Identities=41% Similarity=0.597 Sum_probs=42.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKM 109 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~ 109 (481)
++||++|||+||+|..||+.|++ .|.+|+|+|+. ..| |.| .|..|.+++
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~--~G~kvalvE~~~~lG--------GtC--ln~GCIPsK 52 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQ--LGLKVALVEKGERLG--------GTC--LNVGCIPSK 52 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCCEEEEeecCCcC--------ceE--EeeCccccH
Confidence 57999999999999999999999 67889999987 676 788 788887743
No 91
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.28 E-value=4.1e-10 Score=118.96 Aligned_cols=149 Identities=24% Similarity=0.297 Sum_probs=82.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
.+|||+||||||+|++||+.+++ .|.+|+|||+ ...+++. .-+|.| .|..+.+.+.+.. ..
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~--~g~~v~lie~~~~~~g~~--~~Gg~c--~n~gc~P~k~l~~-----------~a- 64 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQ--LGLKVACIEAWKNPKGKP--ALGGTC--LNVGCIPSKALLA-----------SS- 64 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHh--CCCeEEEEecccCCCCCC--CcCCcc--ccccccHHHHHHH-----------HH-
Confidence 46999999999999999999999 7999999997 1111100 013677 5655544211111 00
Q ss_pred hcCChHHHHHHHHhcCCcceeecCCeeeecC-CChH----HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe
Q 011610 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVS-DSSS----SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE 202 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~a~----~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~ 202 (481)
.. .....+++...|++.... ..-|+.- .... .+.+.+...++..+|+++.+. +..+..++ +.+.|.+.
T Consensus 65 ~~--~~~~~~~~~~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~--~~~~v~v~ 137 (475)
T PRK06327 65 EE--FENAGHHFADHGIHVDGV--KIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGR-GSFVGKTD--AGYEIKVT 137 (475)
T ss_pred HH--HHHHHhhHHhcCccCCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCC--CCCEEEEe
Confidence 00 012222334455543210 0111100 0011 122344455667899998664 44444332 34556554
Q ss_pred ecccCceEEEEcCeEEEccCCCh
Q 011610 203 KRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 203 ~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
. +++.++++|+||+|||+.+
T Consensus 138 ~---~~~~~~~~d~lViATGs~p 157 (475)
T PRK06327 138 G---EDETVITAKHVIIATGSEP 157 (475)
T ss_pred c---CCCeEEEeCEEEEeCCCCC
Confidence 2 1135799999999999865
No 92
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.27 E-value=4.8e-11 Score=109.28 Aligned_cols=142 Identities=19% Similarity=0.237 Sum_probs=86.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
.++||+||||||+|++||+.|++ .|++|+|+|++ .+|. +-+ ..... | ++..++
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~--~g~kV~v~E~~~~~GG-------g~~--~Gg~l---------f---~~iVVq--- 69 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAK--AGLKVAVIERKLSPGG-------GMW--GGGML---------F---NKIVVQ--- 69 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHH--HTS-EEEEESSSS-BT-------TTT--S-CTT---------------EEEE---
T ss_pred ccCCEEEECCChhHHHHHHHHHH--CCCeEEEEecCCCCCc-------ccc--ccccc---------c---chhhhh---
Confidence 46899999999999999999999 69999999965 6662 211 00000 0 001111
Q ss_pred hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeE-EEEEeec--
Q 011610 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKF-LLKVEKR-- 204 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~-~V~~~~~-- 204 (481)
++...++++.|+++....++.+. -++..+...|...+.+.|++|+..+.|.++...+ ++++ +|.++-.
T Consensus 70 -----~~a~~iL~elgi~y~~~~~g~~v---~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~-~~rV~GvViNWt~V 140 (230)
T PF01946_consen 70 -----EEADEILDELGIPYEEYGDGYYV---ADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVRE-DDRVAGVVINWTPV 140 (230)
T ss_dssp -----TTTHHHHHHHT---EE-SSEEEE---S-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEEC-SCEEEEEEEEEHHH
T ss_pred -----hhHHHHHHhCCceeEEeCCeEEE---EcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEc-CCeEEEEEEEehHH
Confidence 12235677889988776544333 4677788888888888999999999999998775 3443 5554310
Q ss_pred -----ccCceEEEEcCeEEEccCCChh
Q 011610 205 -----TMNLVECIEADYLLIASGSSQQ 226 (481)
Q Consensus 205 -----~~~~~~~i~ad~VIlAtG~~g~ 226 (481)
+-+ ...++|+.||-|||.++.
T Consensus 141 ~~~glHvD-Pl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 141 EMAGLHVD-PLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp HTT--T-B--EEEEESEEEE---SSSS
T ss_pred hHhhcCCC-cceEEEeEEEeCCCCchH
Confidence 001 258999999999997653
No 93
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.27 E-value=2.1e-10 Score=120.36 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 160 SSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
+...+.++|.+.+.+ .|++++++++|+++..++ ++.|.+++.+...+...+++||+||+|+|++. ..+++.+|..
T Consensus 182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS--~~La~~~Gi~ 257 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGGWEVTVKDRNTGEKREQVADYVFIGAGGGA--IPLLQKSGIP 257 (497)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCCEEEEEEecCCCceEEEEcCEEEECCCcch--HHHHHHcCCC
Confidence 456778889888864 589999999999998763 35677764210111113689999999999987 5688888864
No 94
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.27 E-value=1.1e-10 Score=124.01 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHH-cCC
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQ-LGH 236 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~-~G~ 236 (481)
++..++..+...+.+.|++++.+++|+++..++ +.+.|++.+...+...+++|+.||+|+|.|.+ .+++. +|.
T Consensus 153 d~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~--~l~~~~~g~ 226 (508)
T PRK12266 153 DDARLVVLNARDAAERGAEILTRTRVVSARREN--GLWHVTLEDTATGKRYTVRARALVNAAGPWVK--QFLDDGLGL 226 (508)
T ss_pred CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEEcCCCCEEEEEcCEEEECCCccHH--HHHhhccCC
Confidence 456666778888999999999999999998764 66777765422233457999999999999874 35443 354
No 95
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.27 E-value=2.2e-10 Score=120.91 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 160 SSSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
+...+..+|.+.+++.| ++|+++++|++++.++ ++.|.|.+.+...+...+++|++||+|+|++. ..+++.+|+.
T Consensus 181 d~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s--~~L~~~~Gi~ 256 (494)
T PRK05257 181 NFGALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA--LPLLQKSGIP 256 (494)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCCEEEEEEEcCCCceEEEEcCEEEECCCcch--HHHHHHcCCC
Confidence 45678899999999887 8999999999998765 34576665421112123699999999999987 5688888876
No 96
>PRK10262 thioredoxin reductase; Provisional
Probab=99.27 E-value=1.3e-10 Score=116.45 Aligned_cols=115 Identities=22% Similarity=0.289 Sum_probs=74.9
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (481)
.+..+||+||||||+|++||..|++ .|++|+++|+...| |.|...... ..|+...
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~--~g~~~~~ie~~~~g--------g~~~~~~~~--------~~~~~~~------- 57 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEKG--------GQLTTTTEV--------ENWPGDP------- 57 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHH--CCCCeEEEEeecCC--------CceecCceE--------CCCCCCC-------
Confidence 3467899999999999999999999 68999999965555 333222100 0111000
Q ss_pred HhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc
Q 011610 127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM 206 (481)
Q Consensus 127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~ 206 (481)
.......+.+.+.+.+...+++++.+ +|..++..+ +.|.+..+.
T Consensus 58 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~--~~~~v~~~~--- 101 (321)
T PRK10262 58 ------------------------------NDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQN--RPFRLTGDS--- 101 (321)
T ss_pred ------------------------------CCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecC--CeEEEEecC---
Confidence 00112234455555666667777665 577777654 667766542
Q ss_pred CceEEEEcCeEEEccCCCh
Q 011610 207 NLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 207 ~~~~~i~ad~VIlAtG~~g 225 (481)
..+.+|+||+|||+.+
T Consensus 102 ---~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 102 ---GEYTCDALIIATGASA 117 (321)
T ss_pred ---CEEEECEEEECCCCCC
Confidence 3689999999999864
No 97
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.25 E-value=1.4e-10 Score=127.36 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=52.9
Q ss_pred CeeeecC--CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610 152 GRVFPVS--DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 152 g~~~p~~--~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
+..+|.. .++..++.+|.+.+++ |++++++++|+++..++ +.+.|.+.+ +..+.||.||+|+|.+.
T Consensus 396 g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~v~t~~-----g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 396 GIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQLDFAG-----GTLASAPVVVLANGHDA 463 (662)
T ss_pred cEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEEEEECC-----CcEEECCEEEECCCCCc
Confidence 4555544 2567889999999988 99999999999998765 567777764 55678999999999875
No 98
>PRK07190 hypothetical protein; Provisional
Probab=99.23 E-value=3.3e-10 Score=119.78 Aligned_cols=165 Identities=21% Similarity=0.201 Sum_probs=94.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhh--
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGS-- 125 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~-- 125 (481)
..+||+||||||+|+++|+.|++ .|.+|+|||+. .+.. .++++..+.... ++.+...-.. .+...
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar--~Gi~V~llEr~~~~~~------~gra~~l~~~tl---e~L~~lGl~~-~l~~~~~ 71 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQL--CGLNTVIVDKSDGPLE------VGRADALNARTL---QLLELVDLFD-ELYPLGK 71 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHH--cCCCEEEEeCCCcccc------cccceEeCHHHH---HHHHhcChHH-HHHhhCc
Confidence 45899999999999999999999 79999999965 3322 255544442211 1111110000 00000
Q ss_pred ---HHhcCChHHHHHHHHhcCCcceeecCCeeee--cCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEE
Q 011610 126 ---FFSLHGPMDTMSWFSDHGVELKTEDDGRVFP--VSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLK 200 (481)
Q Consensus 126 ---~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p--~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~ 200 (481)
....+..... +..... ......+..+| .......+...|.+.+.+.|++++++++|++++.++ +.+.+.
T Consensus 72 ~~~~~~~~~~g~~---i~~~~~-~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~--~~v~v~ 145 (487)
T PRK07190 72 PCNTSSVWANGKF---ISRQSS-WWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ--AGCLTT 145 (487)
T ss_pred cceeEEEecCCce---Eeeccc-cCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeeEEE
Confidence 0000000000 000000 00000000011 111234566777788888999999999999998875 556565
Q ss_pred EeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcc
Q 011610 201 VEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIV 239 (481)
Q Consensus 201 ~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~ 239 (481)
+.+ +.+++|++||.|+|+.+ .+.+.+|+...
T Consensus 146 ~~~-----g~~v~a~~vVgADG~~S---~vR~~lgi~f~ 176 (487)
T PRK07190 146 LSN-----GERIQSRYVIGADGSRS---FVRNHFNVPFE 176 (487)
T ss_pred ECC-----CcEEEeCEEEECCCCCH---HHHHHcCCCcc
Confidence 554 46899999999999865 45667777653
No 99
>PRK10015 oxidoreductase; Provisional
Probab=99.23 E-value=3e-11 Score=125.81 Aligned_cols=162 Identities=19% Similarity=0.306 Sum_probs=91.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
.+|||+||||||||++||+.|++ .|++|+|||+. .++.|.. + ++++.... .+ .+...+..... +
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~--~G~~VlliEr~~~~g~k~~-~-gg~i~~~~---~~--~l~~~~~~~~~-i----- 68 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMAR--AGLDVLVIERGDSAGCKNM-T-GGRLYAHT---LE--AIIPGFAASAP-V----- 68 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCCcccc-c-Cceeeccc---HH--HHcccccccCC-c-----
Confidence 46999999999999999999999 79999999965 4554432 2 23332111 11 11111110000 0
Q ss_pred hcCChHHHHHHHHhc---CCcceeecC----CeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEE
Q 011610 128 SLHGPMDTMSWFSDH---GVELKTEDD----GRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLK 200 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~---Gi~~~~~~~----g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~ 200 (481)
......+...++... .+.+..... ...| ......+...|.+.+++.|++++.+++|+++..++ ++...+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~v~ 145 (429)
T PRK10015 69 ERKVTREKISFLTEESAVTLDFHREQPDVPQHASY--TVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG-NKVTGVQ 145 (429)
T ss_pred cccccceeEEEEeCCCceEeecccCCCCCCCcCce--EeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CEEEEEE
Confidence 000000000000000 000000000 0011 12234566678888999999999999999998764 3333444
Q ss_pred EeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 201 VEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 201 ~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
+. +.++.|+.||+|+|..+ .+++.+|..
T Consensus 146 ~~------~~~i~A~~VI~AdG~~s---~v~~~lg~~ 173 (429)
T PRK10015 146 AG------DDILEANVVILADGVNS---MLGRSLGMV 173 (429)
T ss_pred eC------CeEEECCEEEEccCcch---hhhcccCCC
Confidence 43 46799999999999764 566667753
No 100
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.20 E-value=2.8e-10 Score=117.21 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=93.8
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEec-CCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISG-GGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG-~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (481)
...+||+||||||+|+++|+.|++ .|++|+|||+....+. ...+ +.++..... ....+.+.+.-.. .+....
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~--~G~~v~liE~~~~~~~-~~~~~~~r~~~l~~---~~~~~l~~lGl~~-~~~~~~ 76 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALAD--AGLSVALVEGREPPRW-QADQPDLRVYAFAA---DNAALLDRLGVWP-AVRAAR 76 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc--CCCEEEEEeCCCCccc-ccCCCCCEEEEecH---HHHHHHHHCCchh-hhhHhh
Confidence 356899999999999999999999 7999999997543210 0001 112211110 0111121111000 000000
Q ss_pred HhcCChHHHHHHHHhcC---Ccce-----eecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEE
Q 011610 127 FSLHGPMDTMSWFSDHG---VELK-----TEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFL 198 (481)
Q Consensus 127 l~~~~~~~~~~~~~~~G---i~~~-----~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~ 198 (481)
...+. .+ .+....+ +.+. ....+.. .+...+.+.|.+.+++.|++++++++|++++.++ +.+.
T Consensus 77 ~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~ 147 (392)
T PRK08773 77 AQPYR--RM-RVWDAGGGGELGFDADTLGREQLGWI----VENDLLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVR 147 (392)
T ss_pred CCccc--EE-EEEeCCCCceEEechhccCCCcCEEE----EEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEE
Confidence 00000 00 0000000 0000 0000111 1246778889999999999999999999998765 5677
Q ss_pred EEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 199 LKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 199 V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
|++.+ +.++.||.||.|+|.++ .+.+.+|+..
T Consensus 148 v~~~~-----g~~~~a~~vV~AdG~~S---~vr~~~g~~~ 179 (392)
T PRK08773 148 LRLDD-----GRRLEAALAIAADGAAS---TLRELAGLPV 179 (392)
T ss_pred EEECC-----CCEEEeCEEEEecCCCc---hHHHhhcCCc
Confidence 77765 56799999999999876 4566666553
No 101
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.19 E-value=8.5e-11 Score=120.80 Aligned_cols=170 Identities=16% Similarity=0.141 Sum_probs=91.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (481)
+.+||+|||||++|+++|+.|++ .|++|+|+|+...... .+.+.+.-..........+.....-.. .+. . .
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~---~~~~~~~r~~~l~~~~~~~l~~~g~~~-~~~-~--~ 74 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQ--SGLRVALLAPRAPPRP---ADDAWDSRVYAISPSSQAFLERLGVWQ-ALD-A--A 74 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCccc---cCCCCCCceEeecHHHHHHHHHcCchh-hhh-h--h
Confidence 56899999999999999999999 7999999996633211 011111000000000111111111000 000 0 0
Q ss_pred cCChHHHHHHHHhcCCcceeecCCeeee---cCCChHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610 129 LHGPMDTMSWFSDHGVELKTEDDGRVFP---VSDSSSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLKVEKR 204 (481)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p---~~~~a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~~ 204 (481)
.+.+.+...+.....-.+.......-+| ...+...+.+.|.+.+++.| ++++ +++|++++.++ +.+.|++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~v~~~~- 150 (388)
T PRK07608 75 RLAPVYDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDP--DAATLTLAD- 150 (388)
T ss_pred cCCcceEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEEEEECC-
Confidence 0000000000000000000000000011 11235678889999998887 9998 99999998764 567777765
Q ss_pred ccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 205 TMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 205 ~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
+.+++||.||.|+|.++ .+.+.+|...
T Consensus 151 ----g~~~~a~~vI~adG~~S---~vr~~~~~~~ 177 (388)
T PRK07608 151 ----GQVLRADLVVGADGAHS---WVRSQAGIKA 177 (388)
T ss_pred ----CCEEEeeEEEEeCCCCc---hHHHhcCCCc
Confidence 56799999999999876 3556666653
No 102
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.18 E-value=4e-10 Score=116.44 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
....+.+.|.+.+.+.|++++++++|++++.++ +.+.|++.+ +..+.||.||.|+|.++ .+.+.+|...
T Consensus 109 ~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~-----g~~~~ad~vI~AdG~~S---~vr~~~g~~~ 177 (403)
T PRK07333 109 ENRVLINALRKRAEALGIDLREATSVTDFETRD--EGVTVTLSD-----GSVLEARLLVAADGARS---KLRELAGIKT 177 (403)
T ss_pred EhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEEEEECC-----CCEEEeCEEEEcCCCCh---HHHHHcCCCc
Confidence 456788999999999999999999999998765 567777765 56799999999999875 3666677653
No 103
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.18 E-value=1.3e-10 Score=108.11 Aligned_cols=134 Identities=23% Similarity=0.320 Sum_probs=75.9
Q ss_pred EEECCchHHHHHHHHHhccCCCCc-EEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCC-hhchhhHHhcC
Q 011610 54 VVVGGGAAGVYGAIRAKTVAPKLN-VVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGH-KEFRGSFFSLH 130 (481)
Q Consensus 54 vIIGgG~aGl~aA~~la~~~~g~~-V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 130 (481)
+||||||+|+++|+.|.+ .|.+ |+|||++ .+|+. +.-.... . .+ ...... ..+.-..+..+
T Consensus 1 ~IIGaG~aGl~~a~~l~~--~g~~~v~v~e~~~~~Gg~--------w~~~~~~--~--~~--~~~~~~~~~~~~~~~~~~ 64 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE--RGIDPVVVLERNDRPGGV--------WRRYYSY--T--RL--HSPSFFSSDFGLPDFESF 64 (203)
T ss_dssp EEE--SHHHHHHHHHHHH--TT---EEEEESSSSSTTH--------HHCH-TT--T--T---BSSSCCTGGSS--CCCHS
T ss_pred CEECcCHHHHHHHHHHHh--CCCCcEEEEeCCCCCCCe--------eEEeCCC--C--cc--ccCccccccccCCccccc
Confidence 699999999999999999 6888 9999976 77732 2111000 0 00 000000 00000000111
Q ss_pred ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE 210 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~ 210 (481)
...+...+... ..+ .....+.++|...+++.+++++++++|+++..++ +.|.|++.+ +.
T Consensus 65 ~~~~~~~~~~~-----------~~~---~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~w~v~~~~-----~~ 123 (203)
T PF13738_consen 65 SFDDSPEWRWP-----------HDF---PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG--DGWTVTTRD-----GR 123 (203)
T ss_dssp CHHHHHHHHHS-----------BSS---EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEET--TTEEEEETT-----S-
T ss_pred ccccCCCCCCC-----------ccc---CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEec--cEEEEEEEe-----cc
Confidence 11221111110 111 2457788999999999999999999999999886 559999986 56
Q ss_pred EEEcCeEEEccCCC
Q 011610 211 CIEADYLLIASGSS 224 (481)
Q Consensus 211 ~i~ad~VIlAtG~~ 224 (481)
+++|+.||+|||..
T Consensus 124 ~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 124 TIRADRVVLATGHY 137 (203)
T ss_dssp EEEEEEEEE---SS
T ss_pred eeeeeeEEEeeecc
Confidence 89999999999963
No 104
>PRK08244 hypothetical protein; Provisional
Probab=99.17 E-value=5.4e-10 Score=118.72 Aligned_cols=166 Identities=14% Similarity=0.165 Sum_probs=90.8
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (481)
++||+||||||+|+++|+.|++ .|++|+|||+. .+.. .++....+. ...++.+.+.-. ..+.... .
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viEr~~~~~~------~~ra~~l~~---~~~e~l~~lGl~-~~l~~~~-~ 68 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL--AGVKTCVIERLKETVP------YSKALTLHP---RTLEILDMRGLL-ERFLEKG-R 68 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCC------CcceeEecH---HHHHHHHhcCcH-HHHHhhc-c
Confidence 5899999999999999999999 79999999965 3211 111111110 011111111100 0000000 0
Q ss_pred cCChHHHHHHHH-hcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610 129 LHGPMDTMSWFS-DHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN 207 (481)
Q Consensus 129 ~~~~~~~~~~~~-~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~ 207 (481)
... . ..+.. ...+.+........|........+.+.|.+.+++.|++++++++|++++.++ +.+.|++.+ .+
T Consensus 69 ~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~--~~ 141 (493)
T PRK08244 69 KLP--S-GHFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVEVVVRG--PD 141 (493)
T ss_pred ccc--c-eEEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEEEEEEe--CC
Confidence 000 0 00000 0001111001111111112345667788888888999999999999998765 556666542 11
Q ss_pred ceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 208 LVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 208 ~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
+..+++||+||.|+|..+ .+.+.+|+..
T Consensus 142 g~~~i~a~~vVgADG~~S---~vR~~lgi~~ 169 (493)
T PRK08244 142 GLRTLTSSYVVGADGAGS---IVRKQAGIAF 169 (493)
T ss_pred ccEEEEeCEEEECCCCCh---HHHHhcCCCc
Confidence 125799999999999875 3556666654
No 105
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.16 E-value=2.6e-10 Score=118.28 Aligned_cols=170 Identities=12% Similarity=0.142 Sum_probs=89.2
Q ss_pred CCCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCce-eeccCCCcchhHHhhccCCCChhc
Q 011610 45 THTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRC-NVTNGHCADKMILAGHYPRGHKEF 122 (481)
Q Consensus 45 ~~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~-n~~~~~~~~~~~~~~~~~~~~~~~ 122 (481)
...+..+||+|||||++|+++|+.|++ .|++|+|+|+.. ..... .++. .+... .......+.-
T Consensus 13 ~~~~~~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~----~g~~~~l~~~----~~~~L~~lGl----- 77 (415)
T PRK07364 13 STRSLTYDVAIVGGGIVGLTLAAALKD--SGLRIALIEAQPAEAAAA----KGQAYALSLL----SARIFEGIGV----- 77 (415)
T ss_pred CCCccccCEEEECcCHHHHHHHHHHhc--CCCEEEEEecCCccccCC----CCcEEEechH----HHHHHHHCCh-----
Confidence 344557999999999999999999999 799999999653 21100 0111 11110 0011111110
Q ss_pred hhhHHhcCChHHHHHHHHhcC---Ccceeec-CCeeeecCCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeE
Q 011610 123 RGSFFSLHGPMDTMSWFSDHG---VELKTED-DGRVFPVSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKF 197 (481)
Q Consensus 123 ~~~~l~~~~~~~~~~~~~~~G---i~~~~~~-~g~~~p~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~ 197 (481)
...+.....+.+...+....+ +.+...+ ....++.......+.+.|.+.+.+. +++++++++|++++.++ +.+
T Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~ 155 (415)
T PRK07364 78 WEKILPQIGKFRQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAA 155 (415)
T ss_pred hhhhHhhcCCccEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--Cee
Confidence 000000000000000000000 0000000 0000100112235777888887765 79999999999998765 556
Q ss_pred EEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCC
Q 011610 198 LLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH 236 (481)
Q Consensus 198 ~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~ 236 (481)
.|++.+ .++..+++||.||.|+|..+ .+.+.+|.
T Consensus 156 ~v~~~~--~~~~~~i~adlvIgADG~~S---~vR~~~~~ 189 (415)
T PRK07364 156 TVTLEI--EGKQQTLQSKLVVAADGARS---PIRQAAGI 189 (415)
T ss_pred EEEEcc--CCcceEEeeeEEEEeCCCCc---hhHHHhCC
Confidence 676652 12225799999999999876 34445554
No 106
>PRK06847 hypothetical protein; Provisional
Probab=99.16 E-value=1.5e-10 Score=118.39 Aligned_cols=156 Identities=17% Similarity=0.227 Sum_probs=87.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (481)
+..||+|||||++|+++|+.|++ .|++|+|+|+....+. .|.+ ..+.. ........+. +...+..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~--~g~~v~v~E~~~~~~~---~g~g-~~l~~----~~~~~l~~~g-----l~~~~~~ 67 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRR--AGIAVDLVEIDPEWRV---YGAG-ITLQG----NALRALRELG-----VLDECLE 67 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCcc---CCce-eeecH----HHHHHHHHcC-----CHHHHHH
Confidence 46799999999999999999999 7999999996532110 0111 11100 0001111110 0000000
Q ss_pred cCChHHHHHHHHhcCCcceeec----CCeeeec--CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe
Q 011610 129 LHGPMDTMSWFSDHGVELKTED----DGRVFPV--SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE 202 (481)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~----~g~~~p~--~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~ 202 (481)
.-.+.+...++...|-...... .+..||. ......+.+.|.+.+.+.|++++++++|++++.++ +.+.|.+.
T Consensus 68 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~~~ 145 (375)
T PRK06847 68 AGFGFDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD--DGVTVTFS 145 (375)
T ss_pred hCCCccceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEEEEEc
Confidence 0000000000001111000000 0011121 12346778889999988999999999999998764 56777776
Q ss_pred ecccCceEEEEcCeEEEccCCChh
Q 011610 203 KRTMNLVECIEADYLLIASGSSQQ 226 (481)
Q Consensus 203 ~~~~~~~~~i~ad~VIlAtG~~g~ 226 (481)
+ +.++.+|.||+|+|..+.
T Consensus 146 ~-----g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 146 D-----GTTGRYDLVVGADGLYSK 164 (375)
T ss_pred C-----CCEEEcCEEEECcCCCcc
Confidence 5 568999999999998753
No 107
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=99.16 E-value=4.5e-09 Score=107.75 Aligned_cols=67 Identities=28% Similarity=0.433 Sum_probs=56.1
Q ss_pred cCCCceeEEecCCCC--CCCCCc-----ccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610 404 KGQFKDEFVTAGGVP--LSEISL-----NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL 476 (481)
Q Consensus 404 ~~~~~~a~vt~GGv~--~~ei~~-----~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~ 476 (481)
..|++.|++.+=|+. -+-||+ .|+|.|.+||||||| .+.|.+| |--+.| +|.+||.+||.+++.+++
T Consensus 294 ipgle~a~~~r~g~~~~~~~i~~p~~L~~~l~~k~~~~lf~AG---Qi~G~~G-Y~Eaaa--~Gl~agina~~~~~~~~~ 367 (433)
T TIGR00137 294 IPGLENAEFVRMGVMHRNTFINSPQLLTASLHFKDRQTLFFAG---QLTGVEG-YVASTA--GGWLAGINAARLALGEPL 367 (433)
T ss_pred CcCccceEEeecceEEeeeeeCCHHHhhHHhccCCCCCEEECc---ccccchH-HHHHHH--HHHHHHHHHHHHHcCCCC
Confidence 458899999999976 344664 689999999999999 8888876 888887 999999999999877654
No 108
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.15 E-value=9.4e-10 Score=108.20 Aligned_cols=157 Identities=21% Similarity=0.234 Sum_probs=88.6
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
|||+|||||++|+++|+.|++ .|.+|+|+|+....+.. ..+.+ +.. .......... ... ....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~--~g~~v~vie~~~~~~~~-~~~~~---~~~----~~~~~l~~~~---~~~----~~~~ 63 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD--KGLRVLLLEKKSFPRYK-PCGGA---LSP----RVLEELDLPL---ELI----VNLV 63 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCcc-cccCc---cCH----hHHHHhcCCc---hhh----hhhe
Confidence 699999999999999999999 79999999976433211 00000 000 0000000000 000 0000
Q ss_pred ChHHHHHHHHhcCCcceee-cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 131 GPMDTMSWFSDHGVELKTE-DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~-~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
. ...++...+-..... .....+ ......+.+.|.+.+.+.|++++++++|+++..++ +.+.+.+.. ++
T Consensus 64 ~---~~~~~~~~~~~~~~~~~~~~~~--~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~~~~~~----~~ 132 (295)
T TIGR02032 64 R---GARFFSPNGDSVEIPIETELAY--VIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVVVIVRG----GE 132 (295)
T ss_pred e---eEEEEcCCCcEEEeccCCCcEE--EEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEEEEEcC----cc
Confidence 0 000000000000000 000111 12346777889999999999999999999998765 555554432 14
Q ss_pred EEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 210 ECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
.+++||.||+|+|..+ .+.+.+|...
T Consensus 133 ~~~~a~~vv~a~G~~s---~~~~~~~~~~ 158 (295)
T TIGR02032 133 GTVTAKIVIGADGSRS---IVAKKLGLRK 158 (295)
T ss_pred EEEEeCEEEECCCcch---HHHHhcCCCC
Confidence 6799999999999875 3566666543
No 109
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.15 E-value=6e-10 Score=121.00 Aligned_cols=74 Identities=16% Similarity=0.080 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC-CCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN-AGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 235 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G 235 (481)
++..+...|...+++.|++++.+++|+++..++ ++..+.|++.+..+++...+.||.||+|+|+|. -.+++.+|
T Consensus 230 dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws--~~l~~~~g 304 (627)
T PLN02464 230 NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC--DEVRKMAD 304 (627)
T ss_pred cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH--HHHHHhcc
Confidence 467888899999999999999999999998752 134556665432222234789999999999886 35666665
No 110
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.14 E-value=2.3e-10 Score=110.23 Aligned_cols=171 Identities=13% Similarity=0.142 Sum_probs=96.9
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcch------hHHhhccCCCC-
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADK------MILAGHYPRGH- 119 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~------~~~~~~~~~~~- 119 (481)
..+..||+|||||..|+++|++|++ +|.++++||+-.++.+-..+ .|...+......+. .+-.+.|....
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK--~g~killLeqf~~ph~~GSS-hg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~ 80 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAK--RGDKILLLEQFPLPHSRGSS-HGISRIIRPAYAEDKYMSMVLEAYEKWRNLPE 80 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHh--cCCeEEEEeccCCCcccCcc-cCcceeechhhhhHHHHHHHHHHHHHHHhChh
Confidence 4567899999999999999999999 78999999987665322111 12222222221110 00001111100
Q ss_pred ----------hhchhhHHhcCChHHHHHHHHhcCCccee---ecCCeeee---------------cC--CChHHHHHHHH
Q 011610 120 ----------KEFRGSFFSLHGPMDTMSWFSDHGVELKT---EDDGRVFP---------------VS--DSSSSVIDCLL 169 (481)
Q Consensus 120 ----------~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~---~~~g~~~p---------------~~--~~a~~~~~~l~ 169 (481)
..+....-.+.....+...++..++.... ++-.+.|| .. ..+...+++|.
T Consensus 81 ~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~ 160 (399)
T KOG2820|consen 81 ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQ 160 (399)
T ss_pred hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHH
Confidence 00000000000001111222222221110 11122233 11 13567789999
Q ss_pred HHHHhCCCEEEcCceEEEEEecCC-CCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610 170 TEAKHRGVVLQTGKVVTTASSDNA-GRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 170 ~~~~~~Gv~i~~~~~V~~i~~~~~-~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
..++++|+.++.+.+|+.+...++ +..+.|+|.+ +..|.|+++|+|+|+|-
T Consensus 161 ~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~-----gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 161 DKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD-----GSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHcCeEEecCcceeeEeeccCCCceeEEEecc-----CCeeecceEEEEecHHH
Confidence 999999999999999999875431 3456788876 67799999999999875
No 111
>PRK06834 hypothetical protein; Provisional
Probab=99.13 E-value=9.2e-10 Score=116.44 Aligned_cols=165 Identities=16% Similarity=0.215 Sum_probs=92.7
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+||+||||||+|+++|+.|++ .|.+|+|||+....... +.|....+. ...++.+...- ...+...
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~--~G~~v~vlEr~~~~~~~----~~Ra~~l~~---~s~~~L~~lGl-----~~~l~~~ 68 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELAL--AGVDVAIVERRPNQELV----GSRAGGLHA---RTLEVLDQRGI-----ADRFLAQ 68 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCC----CcceeeECH---HHHHHHHHcCc-----HHHHHhc
Confidence 4899999999999999999999 79999999965321100 011110110 11111211110 0010000
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
-.......+ ....+..........|........+.+.|.+.+++.|++|+++++|++++.++ +.+.|++.+ +
T Consensus 69 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~v~~~~-----g 140 (488)
T PRK06834 69 GQVAQVTGF-AATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD--TGVDVELSD-----G 140 (488)
T ss_pred CCcccccee-eeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEEEEECC-----C
Confidence 000000000 00000000000011111112345677888888888999999999999998875 567776654 4
Q ss_pred EEEEcCeEEEccCCChhHHHHHHHcCCCcc
Q 011610 210 ECIEADYLLIASGSSQQGHRLAAQLGHSIV 239 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~g~~la~~~G~~i~ 239 (481)
.+++||+||.|+|+.+. +.+.+|+...
T Consensus 141 ~~i~a~~vVgADG~~S~---vR~~lgi~~~ 167 (488)
T PRK06834 141 RTLRAQYLVGCDGGRSL---VRKAAGIDFP 167 (488)
T ss_pred CEEEeCEEEEecCCCCC---cHhhcCCCCC
Confidence 58999999999998763 4566676653
No 112
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.13 E-value=2.9e-10 Score=114.63 Aligned_cols=72 Identities=28% Similarity=0.344 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
...+.+.|.+.+++.|++++++++|++++.++ +.+.+.+....++...+++||.||.|+|..+ .+.+.++..
T Consensus 110 r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~--~~~~~~~~~~~~g~~~~i~adlvVgADG~~S---~vR~~l~~~ 181 (356)
T PF01494_consen 110 RPELDRALREEAEERGVDIRFGTRVVSIEQDD--DGVTVVVRDGEDGEEETIEADLVVGADGAHS---KVRKQLGID 181 (356)
T ss_dssp HHHHHHHHHHHHHHHTEEEEESEEEEEEEEET--TEEEEEEEETCTCEEEEEEESEEEE-SGTT----HHHHHTTGG
T ss_pred HHHHHHhhhhhhhhhhhhheeeeecccccccc--cccccccccccCCceeEEEEeeeecccCccc---chhhhcccc
Confidence 45778889999999999999999999998875 5555555542334445899999999999875 566667655
No 113
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.13 E-value=5.7e-10 Score=109.04 Aligned_cols=62 Identities=21% Similarity=0.352 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610 163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
++.+++.+.+++.|+++.++++|.....+. ++.+.|.+.+-+.+..++++||.+++|+|..+
T Consensus 253 Eisk~~qr~L~kQgikF~l~tkv~~a~~~~-dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 253 EISKAFQRVLQKQGIKFKLGTKVTSATRNG-DGPVEIEVENAKTGKKETLECDVLLVSIGRRP 314 (506)
T ss_pred HHHHHHHHHHHhcCceeEeccEEEEeeccC-CCceEEEEEecCCCceeEEEeeEEEEEccCcc
Confidence 556678888888999999999999999876 55777777765556678999999999999765
No 114
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.13 E-value=7.4e-10 Score=116.10 Aligned_cols=136 Identities=19% Similarity=0.190 Sum_probs=81.2
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
+|||+||||||+|++||+.+++ .|++|+|+|++.+| |.| .|..|.+.+.+. ... ..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~G--------G~c--~~~gciPsk~l~-----------~~a-~~ 57 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN--HGAKVAIAEEPRVG--------GTC--VIRGCVPKKLMV-----------YGS-TF 57 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCccC--------cee--ecCCcCchHHHH-----------HHH-HH
Confidence 5999999999999999999999 79999999987766 777 566666532221 110 00
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeee-----cCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFP-----VSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR 204 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p-----~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~ 204 (481)
....+-...+|+..... ...++ ....-..+.+.+...+++.||+++.+ ++..+.. +.+.|..+
T Consensus 58 ---~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~----~~v~v~~~-- 125 (446)
T TIGR01424 58 ---GGEFEDAAGYGWTVGKA--RFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP----NTVEVLQD-- 125 (446)
T ss_pred ---HHHHhhhHhcCcCCCCC--CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEecC--
Confidence 00111122233321100 00000 00011233445666777889999876 5655532 33444322
Q ss_pred ccCceEEEEcCeEEEccCCCh
Q 011610 205 TMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 205 ~~~~~~~i~ad~VIlAtG~~g 225 (481)
+..+.+|+||+|||+.+
T Consensus 126 ----g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 126 ----GTTYTAKKILIAVGGRP 142 (446)
T ss_pred ----CeEEEcCEEEEecCCcC
Confidence 46799999999999864
No 115
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.12 E-value=4.7e-10 Score=116.10 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
...+.+.|.+.+.+.|++++++++|++++.++ +.+.|++.+ +.+++||.||.|+|.++ .+.+.+|..
T Consensus 111 ~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~-----g~~~~a~~vVgAdG~~S---~vR~~lg~~ 177 (405)
T PRK05714 111 NRVVQDALLERLHDSDIGLLANARLEQMRRSG--DDWLLTLAD-----GRQLRAPLVVAADGANS---AVRRLAGCA 177 (405)
T ss_pred hHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEEEEECC-----CCEEEeCEEEEecCCCc---hhHHhcCCC
Confidence 45677888888888899999999999998765 567777765 56899999999999876 345556654
No 116
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.12 E-value=1.1e-09 Score=111.61 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610 160 SSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
++..++..|.+.+.+. |++++.+++|.+|+. + .|++.+ ..++||+||+|+|++.
T Consensus 143 ~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~----~--~v~t~~------g~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 143 EPREAIPALAAYLAEQHGVEFHWNTAVTSVET----G--TVRTSR------GDVHADQVFVCPGADF 197 (365)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec----C--eEEeCC------CcEEeCEEEECCCCCh
Confidence 5677888888888775 999999999999952 2 466664 3578999999999875
No 117
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.11 E-value=7.2e-10 Score=117.86 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHH-HcCC
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAA-QLGH 236 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~-~~G~ 236 (481)
+...+...+...+++.|++++.+++|+++..++ +.+.|.+.+.. +...+++|+.||+|+|.|.+ .+++ .+|.
T Consensus 153 d~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~--~l~~~~~g~ 225 (502)
T PRK13369 153 DDARLVVLNALDAAERGATILTRTRCVSARREG--GLWRVETRDAD-GETRTVRARALVNAAGPWVT--DVIHRVAGS 225 (502)
T ss_pred cHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CEEEEEEEeCC-CCEEEEEecEEEECCCccHH--HHHhhccCC
Confidence 456777788888999999999999999998764 66777776522 23357999999999999864 4544 3354
No 118
>PTZ00058 glutathione reductase; Provisional
Probab=99.11 E-value=1e-09 Score=117.29 Aligned_cols=51 Identities=35% Similarity=0.517 Sum_probs=43.8
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcch
Q 011610 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADK 108 (481)
Q Consensus 46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~ 108 (481)
+....|||+|||||++|++||+.|++ .|.+|+|||++.+| |.| .|..|.++
T Consensus 44 ~~~~~yDvvVIG~G~aG~~aA~~aa~--~G~~ValIEk~~~G--------GtC--ln~GCiPs 94 (561)
T PTZ00058 44 KPRMVYDLIVIGGGSGGMAAARRAAR--NKAKVALVEKDYLG--------GTC--VNVGCVPK 94 (561)
T ss_pred CCCccccEEEECcCHHHHHHHHHHHH--cCCeEEEEeccccc--------ccc--cccCCCCC
Confidence 34467999999999999999999999 79999999987766 788 77777763
No 119
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.10 E-value=1.9e-09 Score=112.77 Aligned_cols=165 Identities=17% Similarity=0.234 Sum_probs=90.6
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhh
Q 011610 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGS 125 (481)
Q Consensus 46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (481)
...+++||+||||||+|++||+.|++ .|++|+|+|+.....+. + |++ . +. ...+.+.- ...+...
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~~~~k~-c-gg~-i--------~~-~~l~~lgl-~~~~~~~ 99 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAK--GGIETFLIERKLDNAKP-C-GGA-I--------PL-CMVGEFDL-PLDIIDR 99 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCC-c-ccc-c--------cH-hHHhhhcC-cHHHHHH
Confidence 44467999999999999999999999 79999999965322111 1 111 1 00 11111110 0011000
Q ss_pred HHhcCChHHHHHHHHhcCCcceee----cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC-CCCeEEEE
Q 011610 126 FFSLHGPMDTMSWFSDHGVELKTE----DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN-AGRKFLLK 200 (481)
Q Consensus 126 ~l~~~~~~~~~~~~~~~Gi~~~~~----~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~~~~~V~ 200 (481)
... -..+....+...... ..+.+ ..-+...+.+.|.+++.+.|++++.+ .++++...+ +++.+.|+
T Consensus 100 ---~i~---~~~~~~p~~~~v~~~~~~~~~~~~--~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~ 170 (450)
T PLN00093 100 ---KVT---KMKMISPSNVAVDIGKTLKPHEYI--GMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIH 170 (450)
T ss_pred ---Hhh---hheEecCCceEEEecccCCCCCeE--EEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEE
Confidence 000 000000011111111 00111 11245667788889999999999865 587776432 02445565
Q ss_pred Eeecc----cCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 201 VEKRT----MNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 201 ~~~~~----~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
+.+.. .+...+++||.||.|+|..+ .+++.+|..
T Consensus 171 ~~~~~~~~~~g~~~~v~a~~VIgADG~~S---~vrr~lg~~ 208 (450)
T PLN00093 171 YTSYDSGSGAGTPKTLEVDAVIGADGANS---RVAKDIDAG 208 (450)
T ss_pred EEeccccccCCCccEEEeCEEEEcCCcch---HHHHHhCCC
Confidence 54210 12235799999999999865 567777754
No 120
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.10 E-value=1.5e-09 Score=116.52 Aligned_cols=169 Identities=16% Similarity=0.171 Sum_probs=91.8
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (481)
...+||+||||||+|+++|+.|++ .|++|+|||+. .+.. .++...... ......+...-. ..+...
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~--~G~~v~v~Er~~~~~~------~~ra~~l~~---~~~~~L~~lGl~-~~l~~~- 74 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ--YGVRVLVLERWPTLYD------LPRAVGIDD---EALRVLQAIGLA-DEVLPH- 74 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCC------CCceeeeCH---HHHHHHHHcCCh-hHHHhh-
Confidence 467899999999999999999999 79999999965 3321 112110100 011111111100 000000
Q ss_pred HhcCChHHHHHHHHhcCCcce-ee---cCCeeee--cCCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEE
Q 011610 127 FSLHGPMDTMSWFSDHGVELK-TE---DDGRVFP--VSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLL 199 (481)
Q Consensus 127 l~~~~~~~~~~~~~~~Gi~~~-~~---~~g~~~p--~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V 199 (481)
..+.....++...|.... .. ....-|| .......+.+.|.+.+.+. |++|+++++|++++.++ +.+.|
T Consensus 75 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~--~~v~v 149 (538)
T PRK06183 75 ---TTPNHGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD--DGVTV 149 (538)
T ss_pred ---cccCCceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC--CeEEE
Confidence 000000001101111000 00 0001122 1123345667787877764 89999999999999875 55777
Q ss_pred EEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 200 KVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 200 ~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
++.+ .++...+++||.||.|+|+.+ .+-+.+|...
T Consensus 150 ~~~~-~~G~~~~i~ad~vVgADG~~S---~vR~~lg~~~ 184 (538)
T PRK06183 150 TLTD-ADGQRETVRARYVVGCDGANS---FVRRTLGVPF 184 (538)
T ss_pred EEEc-CCCCEEEEEEEEEEecCCCch---hHHHHcCCee
Confidence 6652 122236899999999999875 3445556553
No 121
>PRK06184 hypothetical protein; Provisional
Probab=99.10 E-value=1e-09 Score=116.80 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=91.3
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (481)
++||+||||||+|+++|+.|++ .|++|+|||+. .+... ++....+ ....++.+.+.-.. .+.... .
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~--~Gi~v~viE~~~~~~~~------~ra~~l~---~~~~e~l~~lGl~~-~l~~~~-~ 69 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR--RGVSFRLIEKAPEPFPG------SRGKGIQ---PRTQEVFDDLGVLD-RVVAAG-G 69 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCcC------ccceeec---HHHHHHHHHcCcHH-HHHhcC-c
Confidence 5899999999999999999999 79999999964 33211 1111011 01112222211000 000000 0
Q ss_pred cCChHHHHHHHHhcCC----ccee--e-cCCeeee--cCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEE
Q 011610 129 LHGPMDTMSWFSDHGV----ELKT--E-DDGRVFP--VSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLL 199 (481)
Q Consensus 129 ~~~~~~~~~~~~~~Gi----~~~~--~-~~g~~~p--~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V 199 (481)
.+ ... .++...+. .+.. . .....|| .......+...|.+.+.+.|++|+++++|++++.++ +.+.+
T Consensus 70 ~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~--~~v~v 144 (502)
T PRK06184 70 LY--PPM-RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA--DGVTA 144 (502)
T ss_pred cc--cce-eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC--CcEEE
Confidence 00 000 00000000 0000 0 0000111 112234566788888888899999999999998765 55666
Q ss_pred EEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 200 KVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 200 ~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
++.. .+++.+++||+||.|+|+.+ .+.+.+|+..
T Consensus 145 ~~~~--~~~~~~i~a~~vVgADG~~S---~vR~~lgi~~ 178 (502)
T PRK06184 145 RVAG--PAGEETVRARYLVGADGGRS---FVRKALGIGF 178 (502)
T ss_pred EEEe--CCCeEEEEeCEEEECCCCch---HHHHhCCCCc
Confidence 5531 12256899999999999876 3566777664
No 122
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.10 E-value=2.7e-09 Score=109.88 Aligned_cols=160 Identities=18% Similarity=0.204 Sum_probs=88.2
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
|||+||||||||+++|+.|++ .|++|+|+|+.....+. + |++ .+. ...+.+.- ...+....+...
T Consensus 1 yDVvIVGaGpAG~~aA~~La~--~G~~V~l~E~~~~~~~~-c-g~~---------i~~-~~l~~l~i-~~~~~~~~~~~~ 65 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR--AGIETILLERALSNIKP-C-GGA---------IPP-CLIEEFDI-PDSLIDRRVTQM 65 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCcCc-C-cCC---------cCH-hhhhhcCC-chHHHhhhccee
Confidence 799999999999999999999 79999999965211111 1 111 000 11111110 000000000000
Q ss_pred ChHHHHHHHHhcCCcceee-cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecc---c
Q 011610 131 GPMDTMSWFSDHGVELKTE-DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRT---M 206 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~-~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~---~ 206 (481)
.+....|...... ....-|....+...+.+.|.+.+.+.|++++.. .|+++..++ +.+.|++.+.. .
T Consensus 66 ------~~~~~~~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~--~~~~v~~~~~~~~~~ 136 (388)
T TIGR02023 66 ------RMISPSRVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDR--DGVTLTYRTPKKGAG 136 (388)
T ss_pred ------EEEcCCCceeeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcC--CeEEEEEEeccccCC
Confidence 0000011101000 000111111345667788888899999999765 699987765 56666655210 1
Q ss_pred CceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 207 NLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 207 ~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
+...+++||.||.|+|..+ .+.+.+|..
T Consensus 137 ~~~~~i~a~~VI~AdG~~S---~v~r~lg~~ 164 (388)
T TIGR02023 137 GEKGSVEADVVIGADGANS---PVAKELGLP 164 (388)
T ss_pred CcceEEEeCEEEECCCCCc---HHHHHcCCC
Confidence 1135799999999999765 466777764
No 123
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.10 E-value=5.9e-10 Score=114.71 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=90.2
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (481)
.+||+||||||+|+++|+.|++ .|++|+|||+. .... - .++.-.... ...++.+...-. ..+...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~--~G~~V~l~E~~~~~~~---~--~~r~~~l~~---~~~~~L~~lG~~-~~i~~~--- 67 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR--AGLDVTLLERAPRELL---E--RGRGIALSP---NALRALERLGLW-DRLEAL--- 67 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEccCccccc---c--CceeeeecH---hHHHHHHHcCCh-hhhhhc---
Confidence 5899999999999999999999 79999999975 1110 0 112111110 001111111110 000000
Q ss_pred cCChHHHHHHHHhc-C-Cccee-----ecCCeeeecCCChHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEE
Q 011610 129 LHGPMDTMSWFSDH-G-VELKT-----EDDGRVFPVSDSSSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLK 200 (481)
Q Consensus 129 ~~~~~~~~~~~~~~-G-i~~~~-----~~~g~~~p~~~~a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~ 200 (481)
...+.....+.... . +.+.. ...+..+ ....+.+.|.+.+.+.+ ++++++++|+.++.++ +.+.++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~v~ 141 (387)
T COG0654 68 GVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVV----PRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVTVT 141 (387)
T ss_pred cCCceeeEEEecCCceeEEecccccCCCcceEEe----EhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceEEE
Confidence 00000000000000 0 00000 0011222 35778899999998876 9999999999999876 555576
Q ss_pred Ee-ecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610 201 VE-KRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 235 (481)
Q Consensus 201 ~~-~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G 235 (481)
+. + ++++.||.||.|+|.++ .+-+.+|
T Consensus 142 l~~d-----G~~~~a~llVgADG~~S---~vR~~~~ 169 (387)
T COG0654 142 LSFD-----GETLDADLLVGADGANS---AVRRAAG 169 (387)
T ss_pred EcCC-----CcEEecCEEEECCCCch---HHHHhcC
Confidence 66 5 56999999999999875 3455556
No 124
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.09 E-value=2.5e-09 Score=109.69 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 161 SSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 161 a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
...+.+.|.+.+.+ .|++++++++|+++..++ +.+.|++.+ +.++.||.||.|+|.++ .+.+.++...
T Consensus 104 r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~ad~vV~AdG~~S---~vr~~l~~~~ 172 (382)
T TIGR01984 104 LADLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVRVTLDN-----GQQLRAKLLIAADGANS---KVRELLSIPT 172 (382)
T ss_pred cHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEEEEECC-----CCEEEeeEEEEecCCCh---HHHHHcCCCC
Confidence 46788889998888 499999999999998765 567777764 56799999999999875 4667777553
No 125
>PLN02463 lycopene beta cyclase
Probab=99.09 E-value=1.6e-09 Score=112.87 Aligned_cols=140 Identities=24% Similarity=0.204 Sum_probs=85.1
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (481)
....+||+||||||||+++|+.|++ .|++|+|||+..... . .+....-. + .
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~--~Gl~V~liE~~~~~~--------~---p~~~g~w~-~---------------~ 75 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSE--AGLSVCCIDPSPLSI--------W---PNNYGVWV-D---------------E 75 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHH--CCCeEEEeccCccch--------h---ccccchHH-H---------------H
Confidence 3356899999999999999999999 799999999643210 0 01000000 0 0
Q ss_pred HhcCChHHHHHHHHhcCCcceeec-----CCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEE
Q 011610 127 FSLHGPMDTMSWFSDHGVELKTED-----DGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKV 201 (481)
Q Consensus 127 l~~~~~~~~~~~~~~~Gi~~~~~~-----~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~ 201 (481)
+...+..+...... .+......+ ..+.|. ..+...+.+.|.+.+.+.|++++ .++|++++.++ +.+.|++
T Consensus 76 l~~lgl~~~l~~~w-~~~~v~~~~~~~~~~~~~y~-~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~~V~~ 150 (447)
T PLN02463 76 FEALGLLDCLDTTW-PGAVVYIDDGKKKDLDRPYG-RVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE--SKSLVVC 150 (447)
T ss_pred HHHCCcHHHHHhhC-CCcEEEEeCCCCccccCcce-eEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeEEEEE
Confidence 01111111110000 000000000 011121 12456777888899988999996 57999998765 6677887
Q ss_pred eecccCceEEEEcCeEEEccCCCh
Q 011610 202 EKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 202 ~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
++ +.+++||.||.|+|..+
T Consensus 151 ~d-----G~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 151 DD-----GVKIQASLVLDATGFSR 169 (447)
T ss_pred CC-----CCEEEcCEEEECcCCCc
Confidence 76 66899999999999764
No 126
>PRK08013 oxidoreductase; Provisional
Probab=99.09 E-value=6e-10 Score=115.17 Aligned_cols=168 Identities=15% Similarity=0.167 Sum_probs=91.2
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecC---CceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGG---GRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~---g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (481)
.+||+||||||+|+++|+.|++ .|++|+|+|+...... ..|. -|....+. ....+.+.+.-.. .+....
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~--~G~~v~viE~~~~~~~--~~g~~~~~r~~~l~~---~s~~~L~~lGl~~-~~~~~~ 74 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG--SGLRVAVLEQRVPEPL--AADAPPALRVSAINA---ASEKLLTRLGVWQ-DILARR 74 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh--CCCEEEEEeCCCCccc--ccCCCCCceeeecch---hHHHHHHHcCCch-hhhhhc
Confidence 4899999999999999999999 7999999996532111 0010 11111111 0112222221000 000000
Q ss_pred HhcCChHHHHHHHHh--cC-CcceeecCCeee-ecCCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEE
Q 011610 127 FSLHGPMDTMSWFSD--HG-VELKTEDDGRVF-PVSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKV 201 (481)
Q Consensus 127 l~~~~~~~~~~~~~~--~G-i~~~~~~~g~~~-p~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~ 201 (481)
...+ +-..+... .+ +.+.....+..+ ........+.+.|.+.+.+. |++++++++|++++.++ +.+.|++
T Consensus 75 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~ 149 (400)
T PRK08013 75 ASCY---HGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE--NEAFLTL 149 (400)
T ss_pred Cccc---cEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeEEEEE
Confidence 0000 00000000 00 000000001000 00123456778888888775 79999999999998765 5566776
Q ss_pred eecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 202 EKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 202 ~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
.+ +.+++||.||.|+|..+ .+.+.+|...
T Consensus 150 ~~-----g~~i~a~lvVgADG~~S---~vR~~~~~~~ 178 (400)
T PRK08013 150 KD-----GSMLTARLVVGADGANS---WLRNKADIPL 178 (400)
T ss_pred cC-----CCEEEeeEEEEeCCCCc---HHHHHcCCCc
Confidence 65 57899999999999875 4556666553
No 127
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.08 E-value=1.6e-09 Score=106.98 Aligned_cols=112 Identities=27% Similarity=0.396 Sum_probs=79.5
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
|||+|||||++|+++|..|++ .|.+|+|+|+..+| |++..... ...|+. +
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~g--------g~~~~~~~--------~~~~~~----~-------- 50 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGMEPG--------GQLTTTTE--------VENYPG----F-------- 50 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCCC--------cceeeccc--------ccccCC----C--------
Confidence 699999999999999999999 78999999977655 33321110 001110 0
Q ss_pred ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE 210 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~ 210 (481)
+.......+...+.+.+++.|+++++ ++|.++..++ +.+.|++.+ +.
T Consensus 51 -------------------------~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~--~~~~v~~~~-----~~ 97 (300)
T TIGR01292 51 -------------------------PEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSD--RPFKVKTGD-----GK 97 (300)
T ss_pred -------------------------CCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecC--CeeEEEeCC-----CC
Confidence 00011234556677778888999998 8999998764 667777764 56
Q ss_pred EEEcCeEEEccCCCh
Q 011610 211 CIEADYLLIASGSSQ 225 (481)
Q Consensus 211 ~i~ad~VIlAtG~~g 225 (481)
.+.+|+||+|||+.+
T Consensus 98 ~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 98 EYTAKAVIIATGASA 112 (300)
T ss_pred EEEeCEEEECCCCCc
Confidence 899999999999754
No 128
>PRK06126 hypothetical protein; Provisional
Probab=99.08 E-value=4.4e-09 Score=113.18 Aligned_cols=72 Identities=28% Similarity=0.282 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 162 SSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 162 ~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
..+...|.+.+.+ .+++|+++++|+++..++ +.+.+++.+..++...++++|+||.|+|+.+ .+.+.+|+..
T Consensus 126 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S---~VR~~lgi~~ 198 (545)
T PRK06126 126 KYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVTATVEDLDGGESLTIRADYLVGCDGARS---AVRRSLGISY 198 (545)
T ss_pred HHHHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEEEEEEECCCCcEEEEEEEEEEecCCcch---HHHHhcCCcc
Confidence 4466678887775 489999999999998765 5555655432223335799999999999875 4566677654
No 129
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.07 E-value=4.8e-10 Score=117.57 Aligned_cols=135 Identities=21% Similarity=0.269 Sum_probs=79.5
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
+|||+||||||+|+.||+.|++ .|.+|+|+|++.+| |.| .|..|.+++.+. ... ..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~~~G--------G~c--~~~gciPsk~l~-----------~~a-~~ 57 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAE--HGAKALLVEAKKLG--------GTC--VNVGCVPKKVMW-----------YAS-DL 57 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCcEEEecccccc--------cce--eccCcCccHHHH-----------HHH-HH
Confidence 5899999999999999999999 79999999987766 777 565665532211 110 00
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecC-CC----hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVS-DS----SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR 204 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~----a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~ 204 (481)
.+..+....+|++..... ..-++.- .. ...+.+.+...+++.||+++.++.+. .++ +. |.++
T Consensus 58 ---~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~--~~--v~v~-- 124 (450)
T TIGR01421 58 ---AERMHDAADYGFYQNLEN-TFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKD--GT--VEVN-- 124 (450)
T ss_pred ---HHHHhHHhhcCcccCCcC-ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccC--CE--EEEC--
Confidence 011111223343321000 0011100 00 11223345556777899999887542 122 32 4444
Q ss_pred ccCceEEEEcCeEEEccCCCh
Q 011610 205 TMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 205 ~~~~~~~i~ad~VIlAtG~~g 225 (481)
+..+.+|+||+|||+.+
T Consensus 125 ----~~~~~~d~vIiAtGs~p 141 (450)
T TIGR01421 125 ----GRDYTAPHILIATGGKP 141 (450)
T ss_pred ----CEEEEeCEEEEecCCCC
Confidence 45799999999999865
No 130
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.07 E-value=2e-09 Score=112.15 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=60.8
Q ss_pred CeeeecC-CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHH
Q 011610 152 GRVFPVS-DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRL 230 (481)
Q Consensus 152 g~~~p~~-~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~l 230 (481)
+..||.. .+...++-.....+.++|.+++..++|+++..++ +.++|++.+..++...+++|+.||.|||.|.+ .+
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d--~i 228 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREG--GVWGVEVEDRETGETYEIRARAVVNAAGPWVD--EI 228 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeecC--CEEEEEEEecCCCcEEEEEcCEEEECCCccHH--HH
Confidence 3445422 2344666667778888999999999999999886 58899988755566678999999999999874 45
Q ss_pred HHHcC
Q 011610 231 AAQLG 235 (481)
Q Consensus 231 a~~~G 235 (481)
.+..+
T Consensus 229 ~~~~~ 233 (532)
T COG0578 229 LEMAG 233 (532)
T ss_pred HHhhc
Confidence 55554
No 131
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.07 E-value=1.5e-09 Score=114.59 Aligned_cols=144 Identities=24% Similarity=0.308 Sum_probs=81.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (481)
..|||+||||||+|+.||+.|++ .|++|+|+|++.+| |.| .|..|.+++.+... . .
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~~G--------G~c--~~~gciPsk~l~~~-----------a-~ 58 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQ--LGLKTALVEKGKLG--------GTC--LHKGCIPSKALLHS-----------A-E 58 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCCC--------cce--EcCCcCchHHHHHH-----------H-H
Confidence 46999999999999999999999 79999999987776 777 56666653222211 0 0
Q ss_pred cCChHHHHHHHHhcCCcceeecCCeeeecC-CChHHH----HHHHHHHHHhCCCEEEcCceEEEEEec---CCCCeEEEE
Q 011610 129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVS-DSSSSV----IDCLLTEAKHRGVVLQTGKVVTTASSD---NAGRKFLLK 200 (481)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~a~~~----~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~~~~~V~ 200 (481)
.+ ...+.....|+..... ..-|+.. ..-..+ .......+++.||+++.+ +++.+..+ ++++.+.|.
T Consensus 59 ~~---~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~ 132 (472)
T PRK05976 59 VF---QTAKKASPFGISVSGP--ALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVE 132 (472)
T ss_pred HH---HHHHHHHhcCccCCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEE
Confidence 00 0001122233321100 0000000 000111 222334556779999887 45555432 001256666
Q ss_pred EeecccCceEEEEcCeEEEccCCCh
Q 011610 201 VEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 201 ~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
+.+ ++...+.+|+||+|||+.+
T Consensus 133 ~~~---g~~~~~~~d~lViATGs~p 154 (472)
T PRK05976 133 TET---GENEMIIPENLLIATGSRP 154 (472)
T ss_pred eCC---CceEEEEcCEEEEeCCCCC
Confidence 543 1125799999999999865
No 132
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.06 E-value=1.1e-09 Score=112.10 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 161 SSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 161 a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
...+.+.|.+.+.+.| ++++.+++|++++.++ +.+.|++.+ +.++.+|.||.|+|..+ .+.+.++.+
T Consensus 105 r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~~~~vi~adG~~S---~vr~~l~~~ 172 (385)
T TIGR01988 105 NRVLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVELTLDD-----GQQLRARLLVGADGANS---KVRQLAGIP 172 (385)
T ss_pred cHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeEEEECC-----CCEEEeeEEEEeCCCCC---HHHHHcCCC
Confidence 4678888999998888 9999999999998765 567777765 56799999999999875 355666654
No 133
>PRK06185 hypothetical protein; Provisional
Probab=99.06 E-value=1.2e-09 Score=113.05 Aligned_cols=170 Identities=20% Similarity=0.200 Sum_probs=90.3
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhh
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGS 125 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (481)
..+.+||+|||||++|+++|+.|++ .|++|+|||+. ..... .+....+. ....+.+.+.-.. .+...
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~--~G~~v~liE~~~~~~~~------~r~~~l~~---~s~~~L~~lG~~~-~~~~~ 70 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLAR--AGVDVTVLEKHADFLRD------FRGDTVHP---STLELMDELGLLE-RFLEL 70 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCccCcc------ccCceeCh---hHHHHHHHcCChh-HHhhc
Confidence 4467999999999999999999999 79999999965 32211 01000000 0111122111000 00000
Q ss_pred HHhcCChHHHHHHHHhcCC-----cceeecCCeeeecCCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEE
Q 011610 126 FFSLHGPMDTMSWFSDHGV-----ELKTEDDGRVFPVSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLL 199 (481)
Q Consensus 126 ~l~~~~~~~~~~~~~~~Gi-----~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V 199 (481)
...+..-+.+. ..|- .+........+........+.+.|.+.+.+. |++++++++|+++..++ +....|
T Consensus 71 ---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v 145 (407)
T PRK06185 71 ---PHQKVRTLRFE-IGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGV 145 (407)
T ss_pred ---ccceeeeEEEE-ECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEE
Confidence 00000000000 0000 0000000000001123456778888877664 89999999999998765 344345
Q ss_pred EEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 200 KVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 200 ~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
.+.. .++..+++||.||.|+|.++ .+.+.+|...
T Consensus 146 ~~~~--~~g~~~i~a~~vI~AdG~~S---~vr~~~gi~~ 179 (407)
T PRK06185 146 RART--PDGPGEIRADLVVGADGRHS---RVRALAGLEV 179 (407)
T ss_pred EEEc--CCCcEEEEeCEEEECCCCch---HHHHHcCCCc
Confidence 5432 11124799999999999875 3566677654
No 134
>PLN02697 lycopene epsilon cyclase
Probab=99.04 E-value=3.5e-09 Score=112.20 Aligned_cols=136 Identities=23% Similarity=0.240 Sum_probs=82.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (481)
..+||+||||||+|+++|+.|++ .|++|+|||+..+.. ||. .... .....+
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak--~Gl~V~LIe~~~p~~---------~n~---GvW~--~~l~~l------------- 157 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAK--LGLNVGLIGPDLPFT---------NNY---GVWE--DEFKDL------------- 157 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHh--CCCcEEEecCcccCC---------Ccc---ccch--hHHHhc-------------
Confidence 46899999999999999999999 799999999653221 111 0000 000000
Q ss_pred cCChHHHHHHHHhcCCcceeecC-----CeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEE-EEEe
Q 011610 129 LHGPMDTMSWFSDHGVELKTEDD-----GRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFL-LKVE 202 (481)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~-----g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~-V~~~ 202 (481)
+..+.+.... .+......+. +.-|. ..+...+.+.|.+.+.+.|+++ .+++|+++..++ +.+. +.+.
T Consensus 158 --gl~~~i~~~w-~~~~v~~~~~~~~~~~~~Yg-~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~--~~~~vv~~~ 230 (529)
T PLN02697 158 --GLEDCIEHVW-RDTIVYLDDDKPIMIGRAYG-RVSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS--DGLRLVACE 230 (529)
T ss_pred --CcHHHHHhhc-CCcEEEecCCceeeccCccc-EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC--CcEEEEEEc
Confidence 1111110000 0000111110 11111 1345778889999999999998 678999998764 3343 3444
Q ss_pred ecccCceEEEEcCeEEEccCCCh
Q 011610 203 KRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 203 ~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
+ +.++.|+.||+|+|.++
T Consensus 231 d-----G~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 231 D-----GRVIPCRLATVASGAAS 248 (529)
T ss_pred C-----CcEEECCEEEECCCcCh
Confidence 3 56899999999999876
No 135
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.04 E-value=6.3e-09 Score=106.76 Aligned_cols=66 Identities=30% Similarity=0.418 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610 160 SSSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 235 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G 235 (481)
+...++..|.+.++++| ..+..++.|..+... . +.+.|.+.+ + .+.|++||+|+|++. ..++..++
T Consensus 154 ~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~-----g-~i~a~~vv~a~G~~~--~~l~~~~~ 220 (387)
T COG0665 154 DPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDG-----G-TIEADKVVLAAGAWA--GELAATLG 220 (387)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCC-----c-cEEeCEEEEcCchHH--HHHHHhcC
Confidence 45688999999999999 566668999999764 1 457888875 4 499999999999876 45666677
No 136
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.04 E-value=4.2e-09 Score=108.48 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 162 SSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 162 ~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
..+.+.|.+.+.+ .|++++++++|+++..++ +.+.|++.+ +..+.+|.||.|+|.++ .+.+.+|...
T Consensus 112 ~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~a~~vI~AdG~~S---~vr~~~~~~~ 179 (395)
T PRK05732 112 HDVGQRLFALLDKAPGVTLHCPARVANVERTQ--GSVRVTLDD-----GETLTGRLLVAADGSHS---ALREALGIDW 179 (395)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeEEEEECC-----CCEEEeCEEEEecCCCh---hhHHhhCCCc
Confidence 4556677777665 489999999999998764 667787765 56799999999999875 4666666653
No 137
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.03 E-value=3.4e-09 Score=109.13 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 161 SSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 161 a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
...+.+.|.+.+.+. |++++++++|+++..++ +.+.|++++ +.+++||.||.|+|.++ .+.+.+|..
T Consensus 111 r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~a~~vI~AdG~~S---~vR~~~~~~ 178 (391)
T PRK08020 111 NRVLQLALWQALEAHPNVTLRCPASLQALQRDD--DGWELTLAD-----GEEIQAKLVIGADGANS---QVRQMAGIG 178 (391)
T ss_pred cHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeEEEEECC-----CCEEEeCEEEEeCCCCc---hhHHHcCCC
Confidence 456778888888776 99999999999998765 567777765 56899999999999876 366666654
No 138
>PRK09126 hypothetical protein; Provisional
Probab=99.03 E-value=1.1e-09 Score=112.83 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHH-hCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 162 SSVIDCLLTEAK-HRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 162 ~~~~~~l~~~~~-~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
..+.+.|.+.+. ..|++++++++|++++.++ +.+.|++++ +.++.||.||.|+|..+ .+.+.+|..
T Consensus 110 ~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~~v~~~~-----g~~~~a~~vI~AdG~~S---~vr~~~g~~ 176 (392)
T PRK09126 110 HLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGAQVTLAN-----GRRLTARLLVAADSRFS---ATRRQLGIG 176 (392)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeEEEEEcC-----CCEEEeCEEEEeCCCCc---hhhHhcCCC
Confidence 456666766664 4699999999999998764 567777765 56899999999999765 345556654
No 139
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.01 E-value=1.2e-09 Score=111.88 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 160 SSSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
....+.+.|.+.+.+.+ ++++++++|+++..++ +.+.|.+++ + +++||.||.|+|..+ .+.+.++..
T Consensus 102 ~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~-----~-~~~adlvIgADG~~S---~vR~~l~~~ 169 (374)
T PRK06617 102 KNSDFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSIIKFDD-----K-QIKCNLLIICDGANS---KVRSHYFAN 169 (374)
T ss_pred EHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEEEEEcC-----C-EEeeCEEEEeCCCCc---hhHHhcCCC
Confidence 45778888998888875 9999999999998765 567777764 4 899999999999875 344445543
No 140
>PRK06370 mercuric reductase; Validated
Probab=99.01 E-value=2.5e-09 Score=112.64 Aligned_cols=137 Identities=22% Similarity=0.230 Sum_probs=78.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (481)
.+|||+||||||+|++||+.|++ .|++|+|+|+..+| |.| .|..|.+++.+.. .. .
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~~G--------G~c--~~~gciPsk~l~~-----------~a-~ 59 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAG--LGMKVALIERGLLG--------GTC--VNTGCVPTKTLIA-----------SA-R 59 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCccC--------Cce--eccccCcHHHHHH-----------HH-H
Confidence 46999999999999999999999 79999999987766 677 5556655322211 10 0
Q ss_pred cCChHHHHHHHHhcCCccee--e-cCCeeeecC-CChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEee
Q 011610 129 LHGPMDTMSWFSDHGVELKT--E-DDGRVFPVS-DSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEK 203 (481)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~--~-~~g~~~p~~-~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~ 203 (481)
. ..........|+.... . +...+.... .....+...+...+++. ||+++.++.+. .++ . .|.++
T Consensus 60 ~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~--~--~v~v~- 128 (463)
T PRK06370 60 A---AHLARRAAEYGVSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESP--N--TVRVG- 128 (463)
T ss_pred H---HHHHHHHHhcCcccCccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccC--C--EEEEC-
Confidence 0 0111112223432110 0 000000000 00001123344556666 99999887652 122 3 34444
Q ss_pred cccCceEEEEcCeEEEccCCCh
Q 011610 204 RTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 204 ~~~~~~~~i~ad~VIlAtG~~g 225 (481)
+..+.+|+||+|||+.+
T Consensus 129 -----~~~~~~d~lViATGs~p 145 (463)
T PRK06370 129 -----GETLRAKRIFINTGARA 145 (463)
T ss_pred -----cEEEEeCEEEEcCCCCC
Confidence 45799999999999865
No 141
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.00 E-value=1e-08 Score=105.94 Aligned_cols=160 Identities=18% Similarity=0.222 Sum_probs=86.8
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
+||+||||||+|++||+.|++ .|++|+|||+.....+ .|. ...+. .....+.-. ..+... .+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~--~G~~V~llE~~~~~~~-------~cg----~~i~~-~~l~~~g~~-~~~~~~---~i 62 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS--AGIQTFLLERKPDNAK-------PCG----GAIPL-CMVDEFALP-RDIIDR---RV 62 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh--CCCcEEEEecCCCCCC-------Ccc----ccccH-hhHhhccCc-hhHHHh---hh
Confidence 699999999999999999999 7999999996532211 121 00110 111122110 011100 00
Q ss_pred ChHHHHHHHHhcCCcceee----cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC-CCCeEEEEEeecc
Q 011610 131 GPMDTMSWFSDHGVELKTE----DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN-AGRKFLLKVEKRT 205 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~----~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~~~~~V~~~~~~ 205 (481)
.. ..+....+...... ..+.++ .-+...+.+.|.+.+.+.|++++.++ +.++.... .++.+.|+.....
T Consensus 63 ~~---~~~~~p~~~~~~~~~~~~~~~~~~--~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~ 136 (398)
T TIGR02028 63 TK---MKMISPSNIAVDIGRTLKEHEYIG--MLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSD 136 (398)
T ss_pred ce---eEEecCCceEEEeccCCCCCCcee--eeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeecc
Confidence 00 00000011111100 011111 12346667788889999999998775 77775321 1245566543211
Q ss_pred ----cCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 206 ----MNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 206 ----~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
.+...+++|+.||.|+|..+ .+++.+|..
T Consensus 137 ~~~~~g~~~~i~a~~VIgADG~~S---~v~~~~g~~ 169 (398)
T TIGR02028 137 SGGPSGTRCTLEVDAVIGADGANS---RVAKEIDAG 169 (398)
T ss_pred ccccCCCccEEEeCEEEECCCcch---HHHHHhCCC
Confidence 02235799999999999875 567777753
No 142
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.00 E-value=8.8e-09 Score=105.94 Aligned_cols=68 Identities=9% Similarity=0.106 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
...+.+.|.+.+.+.+...+++++|++++.++ +.+.|++++ +.+++||.||.|+|..+ .+.+.+|...
T Consensus 110 ~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~a~~vI~AdG~~S---~vr~~~g~~~ 177 (388)
T PRK07494 110 NWLLNRALEARVAELPNITRFGDEAESVRPRE--DEVTVTLAD-----GTTLSARLVVGADGRNS---PVREAAGIGV 177 (388)
T ss_pred hHHHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEEEEECC-----CCEEEEeEEEEecCCCc---hhHHhcCCCc
Confidence 46778888888887753348899999998765 667777765 56899999999999875 3556666654
No 143
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.00 E-value=1.2e-08 Score=109.86 Aligned_cols=171 Identities=19% Similarity=0.213 Sum_probs=91.8
Q ss_pred CCCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhch
Q 011610 45 THTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR 123 (481)
Q Consensus 45 ~~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~ 123 (481)
+..+.++||+||||||+|+++|+.|++ .|++|+|||+. .+.. .++....+. ...++...+.-.. .+.
T Consensus 18 ~~~~~~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viE~~~~~~~------~~ra~~l~~---~~~~~l~~lGl~~-~l~ 85 (547)
T PRK08132 18 ADDPARHPVVVVGAGPVGLALAIDLAQ--QGVPVVLLDDDDTLST------GSRAICFAK---RSLEIFDRLGCGE-RMV 85 (547)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCCCC------CCeEEEEcH---HHHHHHHHcCCcH-HHH
Confidence 344577999999999999999999999 79999999965 3321 122111111 1112222221100 000
Q ss_pred hhHHhcCChHHHHHHHHhcCCcce--e-ecCCeeeec--CCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeE
Q 011610 124 GSFFSLHGPMDTMSWFSDHGVELK--T-EDDGRVFPV--SDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKF 197 (481)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~Gi~~~--~-~~~g~~~p~--~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~ 197 (481)
... ..+. ....+... +.... . ...+..+|. ......+.+.|.+.+.+. +++++++++|++++.++ +.+
T Consensus 86 ~~~-~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v 159 (547)
T PRK08132 86 DKG-VSWN--VGKVFLRD-EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGV 159 (547)
T ss_pred hhC-ceee--ceeEEeCC-CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEE
Confidence 000 0000 00000000 00000 0 000111110 122345667788887765 79999999999998765 556
Q ss_pred EEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 198 LLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 198 ~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
.+++.. .++..+++||.||.|+|+.+. +.+.+|...
T Consensus 160 ~v~~~~--~~g~~~i~ad~vVgADG~~S~---vR~~lg~~~ 195 (547)
T PRK08132 160 TLTVET--PDGPYTLEADWVIACDGARSP---LREMLGLEF 195 (547)
T ss_pred EEEEEC--CCCcEEEEeCEEEECCCCCcH---HHHHcCCCC
Confidence 555432 112347999999999998763 455667654
No 144
>PLN02612 phytoene desaturase
Probab=99.00 E-value=3.6e-07 Score=98.50 Aligned_cols=56 Identities=7% Similarity=0.043 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCC-eEEEEEeecccCceEEEEcCeEEEccCC
Q 011610 162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGR-KFLLKVEKRTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 223 (481)
..+.+.|.+.+++.|++|+++++|++|+.++ ++ .+.|++.+ ++.+.||+||+|+..
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~~-----G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELND-DGTVKHFLLTN-----GSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECC-CCcEEEEEECC-----CcEEECCEEEECCCH
Confidence 4567888888888999999999999999865 33 34566654 668999999999863
No 145
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.00 E-value=5.6e-09 Score=108.11 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 161 SSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 161 a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
...+.+.|.+.+.+. |++++++++|++++.++ +.+.|++.+ +.+++||.||.|+|..+ .+.+.+|..
T Consensus 110 ~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~a~lvIgADG~~S---~vR~~~~~~ 177 (405)
T PRK08850 110 NRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEAWLTLDN-----GQALTAKLVVGADGANS---WLRRQMDIP 177 (405)
T ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeEEEEECC-----CCEEEeCEEEEeCCCCC---hhHHHcCCC
Confidence 345667788877664 79999999999998765 556777765 56899999999999765 455666654
No 146
>PLN02507 glutathione reductase
Probab=98.98 E-value=1.5e-09 Score=115.13 Aligned_cols=142 Identities=21% Similarity=0.155 Sum_probs=81.0
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC----------CCCCceEEecCCceeeccCCCcchhHHhhccCC
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG----------KPLSKVKISGGGRCNVTNGHCADKMILAGHYPR 117 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~----------~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~ 117 (481)
..+|||+||||||+|+.||..|++ .|.+|+|+|++ .+ ||.| .|..|.+++.+..
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~--~G~~V~liE~~~~~~~~~~~~~~--------GGtc--~n~GciPsK~l~~---- 86 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSAN--FGAKVGICELPFHPISSESIGGV--------GGTC--VIRGCVPKKILVY---- 86 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCcccccccCCCc--------ccee--eccCchhHHHHHH----
Confidence 457999999999999999999999 79999999962 23 3778 6666665332211
Q ss_pred CChhchhhHHhcCChHHHHHHHHhcCCcceeecCCeeee----c-CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC
Q 011610 118 GHKEFRGSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFP----V-SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN 192 (481)
Q Consensus 118 ~~~~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p----~-~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~ 192 (481)
.. . ..+......+.|+...... ..-++ . ......+...+...+...||+++.+ ++..+.
T Consensus 87 -------~a-~---~~~~~~~~~~~G~~~~~~~-~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd--- 150 (499)
T PLN02507 87 -------GA-T---FGGEFEDAKNYGWEINEKV-DFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVG--- 150 (499)
T ss_pred -------HH-H---HHHHHHHHHhcCcccCCCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEec---
Confidence 10 0 0011112233444321000 00000 0 0001122233445566789998876 454442
Q ss_pred CCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610 193 AGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 193 ~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
.+.+.|++.+ +....+.+|+||+|||+.+
T Consensus 151 -~~~v~V~~~~---g~~~~~~~d~LIIATGs~p 179 (499)
T PLN02507 151 -PNEVEVTQLD---GTKLRYTAKHILIATGSRA 179 (499)
T ss_pred -CCEEEEEeCC---CcEEEEEcCEEEEecCCCC
Confidence 2456666553 1123699999999999865
No 147
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.98 E-value=6.4e-09 Score=111.88 Aligned_cols=112 Identities=26% Similarity=0.330 Sum_probs=78.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (481)
..|||+|||||||||+||+.|++ .|++|+|+|++..| |.|..... . ..|+.. .
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~~~G--------G~~~~~~~--i------~~~pg~---------~ 55 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKDDFG--------GQITITSE--V------VNYPGI---------L 55 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCC--------ceEEeccc--c------ccCCCC---------c
Confidence 46999999999999999999999 79999999987665 44432210 0 001000 0
Q ss_pred cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc
Q 011610 129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL 208 (481)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~ 208 (481)
......+.+.+.+.+++.|++++ +++|+++..++ +.+.|.+.+
T Consensus 56 -----------------------------~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~--~~~~V~~~~----- 98 (555)
T TIGR03143 56 -----------------------------NTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDG--DIKTIKTAR----- 98 (555)
T ss_pred -----------------------------CCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecC--CEEEEEecC-----
Confidence 01123455666677778899985 77899887653 556677653
Q ss_pred eEEEEcCeEEEccCCCh
Q 011610 209 VECIEADYLLIASGSSQ 225 (481)
Q Consensus 209 ~~~i~ad~VIlAtG~~g 225 (481)
..+.++.||+|||+++
T Consensus 99 -g~~~a~~lVlATGa~p 114 (555)
T TIGR03143 99 -GDYKTLAVLIATGASP 114 (555)
T ss_pred -CEEEEeEEEECCCCcc
Confidence 3689999999999865
No 148
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.98 E-value=5.5e-09 Score=110.22 Aligned_cols=140 Identities=24% Similarity=0.282 Sum_probs=79.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
.+|||+||||||+|+.||..|++ .|++|+|+|+. .+| |.| .|..|.+.+.+... .
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~~G--------G~c--~n~gciP~K~l~~~-----------a- 58 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAAD--LGLETVCVERYSTLG--------GVC--LNVGCIPSKALLHV-----------A- 58 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCccc--------ccc--cCCCcccHHHHHHH-----------H-
Confidence 46999999999999999999999 79999999975 555 778 66666653222110 0
Q ss_pred hcCChHHHHHHHHhcCCcceeecCCeeeecC-CCh----HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe
Q 011610 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVS-DSS----SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE 202 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~a----~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~ 202 (481)
.. ....+.+...|+..... ..-++.- ..- ..+...+...+++.||+++.++ +.-+ + .+.+.|...
T Consensus 59 ~~---~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~--~--~~~v~v~~~ 128 (471)
T PRK06467 59 KV---IEEAKALAEHGIVFGEP--KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFT--G--GNTLEVTGE 128 (471)
T ss_pred HH---HHHHhhhhhcCcccCCC--CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--c--CCEEEEecC
Confidence 00 00111222334332110 0000000 000 1112233445677899998774 2222 2 245556543
Q ss_pred ecccCceEEEEcCeEEEccCCCh
Q 011610 203 KRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 203 ~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
+ +...++.+|+||+|||+.+
T Consensus 129 ~---g~~~~~~~d~lViATGs~p 148 (471)
T PRK06467 129 D---GKTTVIEFDNAIIAAGSRP 148 (471)
T ss_pred C---CceEEEEcCEEEEeCCCCC
Confidence 2 1125799999999999865
No 149
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.98 E-value=1.6e-09 Score=114.09 Aligned_cols=144 Identities=22% Similarity=0.241 Sum_probs=76.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
.+|||+||||||+|+.||+.|++ .|.+|+|+|+. .+| |.| .|..+.+++.+..... . +
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~--~G~~v~liE~~~~~G--------G~~--~~~gcipsk~l~~~~~--------~-~ 62 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK--LGKRVAVIERYRNVG--------GGC--THTGTIPSKALREAVL--------R-L 62 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCEEEEEecccccc--------ccc--cccCCCCHHHHHHHHH--------H-H
Confidence 46999999999999999999999 79999999975 666 667 3444444221111000 0 0
Q ss_pred hcCChHHHHHHHHhcCCcceeecCCeeee-cCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc
Q 011610 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFP-VSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM 206 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p-~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~ 206 (481)
..+ .+. ..+...+.+... +...+.. ...-...+.+.+.+.+++.|++++.++ +..+ + .+.+.|...+
T Consensus 63 ~~~--~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~--~--~~~~~v~~~~--- 130 (461)
T PRK05249 63 IGF--NQN-PLYSSYRVKLRI-TFADLLARADHVINKQVEVRRGQYERNRVDLIQGR-ARFV--D--PHTVEVECPD--- 130 (461)
T ss_pred HHH--hhh-hhhcccCCcCcc-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEe--c--CCEEEEEeCC---
Confidence 000 000 000000000000 0000000 000011223345566778899998774 3333 2 2456666543
Q ss_pred CceEEEEcCeEEEccCCCh
Q 011610 207 NLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 207 ~~~~~i~ad~VIlAtG~~g 225 (481)
+....+++|+||+|||+.+
T Consensus 131 g~~~~~~~d~lviATGs~p 149 (461)
T PRK05249 131 GEVETLTADKIVIATGSRP 149 (461)
T ss_pred CceEEEEcCEEEEcCCCCC
Confidence 1124799999999999865
No 150
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.98 E-value=3e-09 Score=104.99 Aligned_cols=173 Identities=20% Similarity=0.250 Sum_probs=105.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhcc----CCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhch
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTV----APKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR 123 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~----~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~ 123 (481)
..+||+|||||||||+||+.|.+. +..++|+|+||. .+|..++ +| .+ ...... +++...|......+.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl-SG--av--iep~al--dEL~P~wke~~apl~ 147 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL-SG--AV--IEPGAL--DELLPDWKEDGAPLN 147 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee-cc--ee--eccchh--hhhCcchhhcCCccc
Confidence 568999999999999999998763 357899999976 6664332 22 11 111111 244444443332222
Q ss_pred hhHHhcCChHHHHHHHHhcC---Ccc--eeecCC-eeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeE
Q 011610 124 GSFFSLHGPMDTMSWFSDHG---VEL--KTEDDG-RVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKF 197 (481)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~G---i~~--~~~~~g-~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~ 197 (481)
..+ + .|...++...+ ++. .....| ++. +-..+++.|-+.+++.||+|+-+..+.++..++++...
T Consensus 148 t~v----T-~d~~~fLt~~~~i~vPv~~pm~NhGNYvv----~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVk 218 (621)
T KOG2415|consen 148 TPV----T-SDKFKFLTGKGRISVPVPSPMDNHGNYVV----SLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVK 218 (621)
T ss_pred ccc----c-ccceeeeccCceeecCCCcccccCCcEEE----EHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEe
Confidence 111 1 12222332211 111 111111 221 34678999999999999999999999999887634455
Q ss_pred EEEEeecc----------cCceEEEEcCeEEEccCCChhH-HHHHHHcCCC
Q 011610 198 LLKVEKRT----------MNLVECIEADYLLIASGSSQQG-HRLAAQLGHS 237 (481)
Q Consensus 198 ~V~~~~~~----------~~~~~~i~ad~VIlAtG~~g~g-~~la~~~G~~ 237 (481)
+|.|.+.. -.++-+++|+..|.|-|..|.- -++.++++++
T Consensus 219 GiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr 269 (621)
T KOG2415|consen 219 GIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLR 269 (621)
T ss_pred eEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcc
Confidence 77765410 1235679999999999988754 3455666665
No 151
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.98 E-value=2.1e-07 Score=94.08 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=35.7
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCC
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLS 88 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~ 88 (481)
....||||||+|.+||+||++|.+ .|++|+|+| +++.|+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k--aG~~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK--AGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh--cCcEEEEEeccCCcCc
Confidence 457899999999999999999999 899999999 788874
No 152
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.97 E-value=3.7e-09 Score=108.98 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHhCC-CEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610 161 SSSVIDCLLTEAKHRG-VVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 226 (481)
Q Consensus 161 a~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~ 226 (481)
...+.+.|.+.+.+.+ ++++++++|+++..++ +.+.|++.+ +.++.||.||.|+|.++.
T Consensus 108 r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~-----g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 108 RADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVTVFDQQ-----GNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceEEEEcC-----CCEEecCEEEECCCcChH
Confidence 4567788888887765 9999999999998764 556777665 567999999999998763
No 153
>PRK14694 putative mercuric reductase; Provisional
Probab=98.97 E-value=4.3e-09 Score=111.07 Aligned_cols=49 Identities=27% Similarity=0.507 Sum_probs=41.7
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcc
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCAD 107 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~ 107 (481)
.+..|||+||||||+|++||..|++ .|.+|+|+|++.+| |.| .|..|.+
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~--~g~~v~lie~~~~G--------Gtc--~n~GciP 51 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATE--RGARVTLIERGTIG--------GTC--VNIGCVP 51 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEEccccc--------cce--ecCCccc
Confidence 4568999999999999999999999 78999999988776 667 4666655
No 154
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.97 E-value=1.4e-08 Score=104.58 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610 162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
..+.+.|.+.+.+.|++++++++|++++..+ ++...|++.. ++...+++||.||.|+|..+
T Consensus 103 ~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~-~~~~~V~~~~--~G~~~~i~ad~vVgADG~~S 163 (392)
T PRK08243 103 TEVTRDLMAARLAAGGPIRFEASDVALHDFD-SDRPYVTYEK--DGEEHRLDCDFIAGCDGFHG 163 (392)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeEEEEEecC-CCceEEEEEc--CCeEEEEEeCEEEECCCCCC
Confidence 4566778877888899999999999997622 2445566531 12235799999999999876
No 155
>PRK07045 putative monooxygenase; Reviewed
Probab=98.95 E-value=9.2e-09 Score=105.83 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=84.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (481)
..+||+||||||+|+++|+.|++ .|++|+|+|+....+. .+++ ..+... .........- ...+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~--~G~~v~v~E~~~~~~~---~~~~-~~l~~~----~~~~L~~lGl-----~~~~~~ 68 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA--RGHSVTVVERAARNRA---QNGA-DLLKPS----GIGVVRAMGL-----LDDVFA 68 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh--cCCcEEEEeCCCcccC---CCcc-cccCcc----HHHHHHHcCC-----HHHHHh
Confidence 45899999999999999999999 7999999996532210 0000 001110 0011111110 000000
Q ss_pred cCC-hHHHHHHHHhcCCccee------ecCCeeeecCCChHHHHHHHHHHHH-hCCCEEEcCceEEEEEecCCCC-eEEE
Q 011610 129 LHG-PMDTMSWFSDHGVELKT------EDDGRVFPVSDSSSSVIDCLLTEAK-HRGVVLQTGKVVTTASSDNAGR-KFLL 199 (481)
Q Consensus 129 ~~~-~~~~~~~~~~~Gi~~~~------~~~g~~~p~~~~a~~~~~~l~~~~~-~~Gv~i~~~~~V~~i~~~~~~~-~~~V 199 (481)
.-. ..+...++. .|-.... ...+. ........+.+.|.+.+. ..|++++++++|++++.++ ++ .+.|
T Consensus 69 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~--~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~~~v 144 (388)
T PRK07045 69 AGGLRRDAMRLYH-DKELIASLDYRSASALGY--FILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDA-DGTVTSV 144 (388)
T ss_pred cccccccceEEec-CCcEEEEecCCccccCCc--eEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECC-CCcEEEE
Confidence 000 000000000 0100000 00011 011224567788888775 4689999999999998765 34 3467
Q ss_pred EEeecccCceEEEEcCeEEEccCCChh
Q 011610 200 KVEKRTMNLVECIEADYLLIASGSSQQ 226 (481)
Q Consensus 200 ~~~~~~~~~~~~i~ad~VIlAtG~~g~ 226 (481)
++.+ +.++.+|.||.|+|..+.
T Consensus 145 ~~~~-----g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 145 TLSD-----GERVAPTVLVGADGARSM 166 (388)
T ss_pred EeCC-----CCEEECCEEEECCCCChH
Confidence 7665 568999999999998763
No 156
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.95 E-value=7.7e-09 Score=109.00 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610 163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 226 (481)
Q Consensus 163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~ 226 (481)
++...+.+.+++.||+++++++|+++..++ +.+.+.+.. .+++.++.+|.||+|+|..+.
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~~~v~~~~--~~~~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 208 EISAAVEEALAEEGIEVVTSAQVKAVSVRG--GGKIITVEK--PGGQGEVEADELLVATGRRPN 267 (463)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEcC--CEEEEEEEe--CCCceEEEeCEEEEeECCCcC
Confidence 445567777888999999999999998754 445555432 122467999999999997654
No 157
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.95 E-value=1.2e-08 Score=106.89 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=31.7
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (481)
+|||+||||||+|++||..|++ .|.+|+|+|+..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~--~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS--AGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh--CCCEEEEEecCC
Confidence 5999999999999999999999 799999999763
No 158
>PLN02985 squalene monooxygenase
Probab=98.94 E-value=7.1e-09 Score=110.16 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCC
Q 011610 161 SSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGH 236 (481)
Q Consensus 161 a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~ 236 (481)
...+.+.|.+.+.+. +|+++.+ +|+++..++ +...+|++.. .++...+++||.||.|+|..+ .+.+.++.
T Consensus 146 r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~~v~gV~~~~-~dG~~~~~~AdLVVgADG~~S---~vR~~l~~ 216 (514)
T PLN02985 146 NGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-GVIKGVTYKN-SAGEETTALAPLTVVCDGCYS---NLRRSLND 216 (514)
T ss_pred cHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-CEEEEEEEEc-CCCCEEEEECCEEEECCCCch---HHHHHhcc
Confidence 457888888888765 6998865 677776554 3334565532 122234678999999999875 44455553
No 159
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.94 E-value=3e-09 Score=109.31 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 162 SSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 162 ~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
..+...|.+.+.+ .+++++++++|++++.++ +.+.|++.+ +.+++||.||.|+|..+ .+.+.+|..
T Consensus 110 ~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~--~~~~v~~~~-----g~~~~~~lvIgADG~~S---~vR~~~gi~ 176 (384)
T PRK08849 110 RLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA--EGNRVTLES-----GAEIEAKWVIGADGANS---QVRQLAGIG 176 (384)
T ss_pred HHHHHHHHHHHHhCCCeEEECCCceeEEEEcC--CeEEEEECC-----CCEEEeeEEEEecCCCc---hhHHhcCCC
Confidence 3456677777655 479999999999998865 557777775 67899999999999875 345556644
No 160
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.7e-08 Score=90.76 Aligned_cols=117 Identities=24% Similarity=0.374 Sum_probs=81.0
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
...|+|||.||++-.||+.+++ ..++.+|+|-.-.+. +..||+. +..... +.|+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaar--aelkPllfEG~~~~~---i~pGGQL--tTTT~v------eNfP------------- 61 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAAR--AELKPLLFEGMMANG---IAPGGQL--TTTTDV------ENFP------------- 61 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhh--cccCceEEeeeeccC---cCCCcee--eeeecc------ccCC-------------
Confidence 4589999999999999999999 789999999322110 0002322 211100 1121
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
-||......++++.+.+..++.|.+|+.+ .|.++.... ..|.+.++ .
T Consensus 62 ------------------------GFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss--kpF~l~td------~ 108 (322)
T KOG0404|consen 62 ------------------------GFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS--KPFKLWTD------A 108 (322)
T ss_pred ------------------------CCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC--CCeEEEec------C
Confidence 12333345667788888888899998766 688887764 78988887 4
Q ss_pred EEEEcCeEEEccCCCh
Q 011610 210 ECIEADYLLIASGSSQ 225 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g 225 (481)
+.+.||.||+|||+..
T Consensus 109 ~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 109 RPVTADAVILATGASA 124 (322)
T ss_pred CceeeeeEEEecccce
Confidence 7899999999999753
No 161
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.93 E-value=7.4e-09 Score=109.16 Aligned_cols=139 Identities=24% Similarity=0.265 Sum_probs=78.9
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (481)
+|||+||||||+|+.||+.|++ .|++|+|+|+ +.+| |.| .|..|.+++.+.... ..+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~--~G~~V~liE~~~~~G--------G~c--~~~gciPsK~l~~~~-----~~~----- 60 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQ--LGLKVACVEGRSTLG--------GTC--LNVGCMPSKALLHAS-----ELY----- 60 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCcee--------eee--ccCcccccHHHHHHh-----HHH-----
Confidence 4899999999999999999999 7999999996 5666 777 666676633222110 000
Q ss_pred cCChHHHHH-HHHhcCCcceeecCCeeeecC-C----ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe
Q 011610 129 LHGPMDTMS-WFSDHGVELKTEDDGRVFPVS-D----SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE 202 (481)
Q Consensus 129 ~~~~~~~~~-~~~~~Gi~~~~~~~g~~~p~~-~----~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~ 202 (481)
+.... .+...|+.... ..-+..- . ....+...+...+++.+|+++.+.. .+. + .+.+.|...
T Consensus 61 ----~~~~~~~~~~~gi~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a--~~~--~-~~~v~v~~~ 128 (466)
T PRK06115 61 ----EAASGGEFAHLGIEVKP---TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG--RLD--G-VGKVVVKAE 128 (466)
T ss_pred ----HHHhhhhhhhcCccccC---ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE--EEc--c-CCEEEEEcC
Confidence 00110 12234443210 0000000 0 0011122344455667898887652 332 2 244555544
Q ss_pred ecccCceEEEEcCeEEEccCCCh
Q 011610 203 KRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 203 ~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
+ ++..++++|+||+|||+.+
T Consensus 129 ~---g~~~~~~~d~lVIATGs~p 148 (466)
T PRK06115 129 D---GSETQLEAKDIVIATGSEP 148 (466)
T ss_pred C---CceEEEEeCEEEEeCCCCC
Confidence 3 1124799999999999865
No 162
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.93 E-value=1.1e-08 Score=105.34 Aligned_cols=136 Identities=21% Similarity=0.188 Sum_probs=81.4
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
||+|||||++|+++|+.|++ .|++|+|||+. ..+.. -.+.+... ..+ ... -..... ..+
T Consensus 1 DviIiGaG~AGl~~A~~la~--~g~~v~liE~~~~~~~~------~~~~~~~~-~~~------~~~--~~~~~~---~~~ 60 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR--PGLRVQLIEPHPPIPGN------HTYGVWDD-DLS------DLG--LADCVE---HVW 60 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCCC------ccccccHh-hhh------hhc--hhhHHh---hcC
Confidence 89999999999999999998 79999999965 44310 00100000 000 000 000000 000
Q ss_pred ChHHHHHHHHhcCCcceee----cCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc
Q 011610 131 GPMDTMSWFSDHGVELKTE----DDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM 206 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~----~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~ 206 (481)
.. ...+... .....|. ..+...+.+.|.+.+.+.|++++ .++|+++..++ ++.+.|++++
T Consensus 61 ~~----------~~~~~~~~~~~~~~~~~~-~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~--- 124 (388)
T TIGR01790 61 PD----------VYEYRFPKQPRKLGTAYG-SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAG--- 124 (388)
T ss_pred CC----------ceEEecCCcchhcCCcee-EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCC---
Confidence 00 0000000 0011111 13567888999999988899986 56888887763 3567777765
Q ss_pred CceEEEEcCeEEEccCCCh
Q 011610 207 NLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 207 ~~~~~i~ad~VIlAtG~~g 225 (481)
+.+++|+.||.|+|..+
T Consensus 125 --g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 125 --GQRIQARLVIDARGFGP 141 (388)
T ss_pred --CCEEEeCEEEECCCCch
Confidence 56899999999999764
No 163
>PLN02487 zeta-carotene desaturase
Probab=98.93 E-value=8.7e-07 Score=94.90 Aligned_cols=69 Identities=16% Similarity=0.043 Sum_probs=49.5
Q ss_pred eeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCC-CC---eEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610 154 VFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNA-GR---KFLLKVEKRTMNLVECIEADYLLIASGSS 224 (481)
Q Consensus 154 ~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~~---~~~V~~~~~~~~~~~~i~ad~VIlAtG~~ 224 (481)
.||...-...+.+.+.+.+++.|++|++++.|.+|..+.+ ++ .++|++.+ .+.+..+.+|.||+|++.+
T Consensus 287 ~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~--~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 287 RMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK--ATEKEIVKADAYVAACDVP 359 (569)
T ss_pred eecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec--CCCceEEECCEEEECCCHH
Confidence 3444444446889999999999999999999999998631 12 34666631 1124578999999999854
No 164
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.93 E-value=1.5e-08 Score=108.24 Aligned_cols=114 Identities=19% Similarity=0.247 Sum_probs=83.3
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
...+||+||||||+|++||.+|++ .|++|+|+|.. +| |++.-+.. .+ .+.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~~-~G--------G~~~~~~~--~~------~~~----------- 258 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAER-FG--------GQVLDTMG--IE------NFI----------- 258 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC-CC--------CeeeccCc--cc------ccC-----------
Confidence 457999999999999999999999 79999999853 44 44421110 00 000
Q ss_pred hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN 207 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~ 207 (481)
+. | ......+.+.+.+.+++.|++++++++|.++...+ +.+.|.+.+
T Consensus 259 ---------------~~-----------~-~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~~~V~~~~---- 305 (517)
T PRK15317 259 ---------------SV-----------P-ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAA--GLIEVELAN---- 305 (517)
T ss_pred ---------------CC-----------C-CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEECC----
Confidence 00 0 01234567788888889999999999999998764 667777764
Q ss_pred ceEEEEcCeEEEccCCCh
Q 011610 208 LVECIEADYLLIASGSSQ 225 (481)
Q Consensus 208 ~~~~i~ad~VIlAtG~~g 225 (481)
+..+.+|.||+|||+.+
T Consensus 306 -g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 306 -GAVLKAKTVILATGARW 322 (517)
T ss_pred -CCEEEcCEEEECCCCCc
Confidence 56799999999999854
No 165
>PRK11445 putative oxidoreductase; Provisional
Probab=98.92 E-value=3.1e-08 Score=100.61 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
+...+.+.|.+ +...|+++++++.|++++.++ +.+.|++.. ++...+++||.||.|+|+.+
T Consensus 97 ~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~--~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 97 DRHKFDLWLKS-LIPASVEVYHNSLCRKIWRED--DGYHVIFRA--DGWEQHITARYLVGADGANS 157 (351)
T ss_pred cHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcC--CEEEEEEec--CCcEEEEEeCEEEECCCCCc
Confidence 34555555655 456789999999999998765 567776531 12123799999999999876
No 166
>PRK07588 hypothetical protein; Provisional
Probab=98.92 E-value=6.7e-09 Score=106.96 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610 161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 226 (481)
Q Consensus 161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~ 226 (481)
...+.+.|.+.+. .+++++++++|++++.++ +.+.|++++ +..+++|.||.|+|.++.
T Consensus 102 r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~--~~v~v~~~~-----g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 102 RGDLAAAIYTAID-GQVETIFDDSIATIDEHR--DGVRVTFER-----GTPRDFDLVIGADGLHSH 159 (391)
T ss_pred HHHHHHHHHHhhh-cCeEEEeCCEEeEEEECC--CeEEEEECC-----CCEEEeCEEEECCCCCcc
Confidence 3456666666554 489999999999998765 667777765 667899999999998653
No 167
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.91 E-value=1.5e-08 Score=108.09 Aligned_cols=114 Identities=20% Similarity=0.282 Sum_probs=80.8
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
...+||+||||||+|++||+.|++ .|++|+|+|. .+| |++. +.... ..+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~-~~G--------G~~~--~~~~~------~~~~----------- 259 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAE-RIG--------GQVK--DTVGI------ENLI----------- 259 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEec-CCC--------Cccc--cCcCc------cccc-----------
Confidence 456999999999999999999999 7999999984 233 3331 10000 0000
Q ss_pred hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccC
Q 011610 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMN 207 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~ 207 (481)
+. | ......+.+.+.+.+++.|++++.+++|.++..++ +.+.|.+.+
T Consensus 260 ---------------~~-----------~-~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~~~v~~~~---- 306 (515)
T TIGR03140 260 ---------------SV-----------P-YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETED--GLIVVTLES---- 306 (515)
T ss_pred ---------------cc-----------C-CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC--CeEEEEECC----
Confidence 00 0 01234456677777888899999999999998764 567777764
Q ss_pred ceEEEEcCeEEEccCCCh
Q 011610 208 LVECIEADYLLIASGSSQ 225 (481)
Q Consensus 208 ~~~~i~ad~VIlAtG~~g 225 (481)
+..+.+|++|+|||+.+
T Consensus 307 -g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 307 -GEVLKAKSVIVATGARW 323 (515)
T ss_pred -CCEEEeCEEEECCCCCc
Confidence 56799999999999753
No 168
>PRK06996 hypothetical protein; Provisional
Probab=98.91 E-value=1.1e-08 Score=105.78 Aligned_cols=161 Identities=13% Similarity=0.132 Sum_probs=88.0
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhccC--CCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhch
Q 011610 46 HTSSEELLVVVGGGAAGVYGAIRAKTVA--PKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR 123 (481)
Q Consensus 46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~--~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~ 123 (481)
..++.+||+||||||+|+++|+.|++.+ .|++|+|+|+...... .+..|....+ .....+.+.+.-... ..
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~---~~~~r~~~l~---~~~~~~L~~lg~~~~-~~ 79 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAAS---ANDPRAIALS---HGSRVLLETLGAWPA-DA 79 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcC---CCCceEEEec---HHHHHHHHhCCCchh-cC
Confidence 4556799999999999999999999832 1367999997533210 0011211111 111122222221100 00
Q ss_pred hhH--HhcCChHHHHHHHHhcC-CcceeecCCe-eeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEE
Q 011610 124 GSF--FSLHGPMDTMSWFSDHG-VELKTEDDGR-VFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLL 199 (481)
Q Consensus 124 ~~~--l~~~~~~~~~~~~~~~G-i~~~~~~~g~-~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V 199 (481)
... +...+. . ..| ..+...+.+. .+....+...+.+.|.+.+.+.|+++++++++++++.++ +.+.+
T Consensus 80 ~~~~~~~~~~~-~------~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~--~~v~v 150 (398)
T PRK06996 80 TPIEHIHVSQR-G------HFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA--DGVTL 150 (398)
T ss_pred CcccEEEEecC-C------CCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC--CeEEE
Confidence 000 000000 0 000 0000000000 000112346788899999999999999999999997764 56777
Q ss_pred EEeecccCceEEEEcCeEEEccCCC
Q 011610 200 KVEKRTMNLVECIEADYLLIASGSS 224 (481)
Q Consensus 200 ~~~~~~~~~~~~i~ad~VIlAtG~~ 224 (481)
++.+ .+++.+++||.||.|+|+.
T Consensus 151 ~~~~--~~g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 151 ALGT--PQGARTLRARIAVQAEGGL 173 (398)
T ss_pred EECC--CCcceEEeeeEEEECCCCC
Confidence 6653 1112689999999999963
No 169
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.91 E-value=1.4e-08 Score=104.97 Aligned_cols=144 Identities=22% Similarity=0.274 Sum_probs=91.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
+..+|+|||||||||.+|.+|.+ .|++|+++||. .+| |-++.+...... ...+++.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~~~iG--------GlW~y~~~~~~~-----------~ss~Y~~l- 62 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLR--EGHEVVVFERTDDIG--------GLWKYTENVEVV-----------HSSVYKSL- 62 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHH--CCCCceEEEecCCcc--------ceEeecCccccc-----------ccchhhhh-
Confidence 46799999999999999999999 79999999965 666 444443211100 00111111
Q ss_pred hcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCC--EEEcCceEEEEEecCCCCeEEEEEeecc
Q 011610 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGV--VLQTGKVVTTASSDNAGRKFLLKVEKRT 205 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 205 (481)
..-.+.+.+.+ ...++... ....|| ....++++|...|++.++ .|.++++|..+.... ++.|.|.+.+..
T Consensus 63 ~tn~pKe~~~~---~dfpf~~~-~~~~~p---~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~-~gkW~V~~~~~~ 134 (448)
T KOG1399|consen 63 RTNLPKEMMGY---SDFPFPER-DPRYFP---SHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSID-KGKWRVTTKDNG 134 (448)
T ss_pred hccCChhhhcC---CCCCCccc-CcccCC---CHHHHHHHHHHHHHhcChhhheEecccEEEEeecc-CCceeEEEecCC
Confidence 11112222211 11222211 123333 456899999999998875 688999999998764 268999887511
Q ss_pred cCceEEEEcCeEEEccCC
Q 011610 206 MNLVECIEADYLLIASGS 223 (481)
Q Consensus 206 ~~~~~~i~ad~VIlAtG~ 223 (481)
.. ..+..+|.||+|||-
T Consensus 135 ~~-~~~~ifd~VvVctGh 151 (448)
T KOG1399|consen 135 TQ-IEEEIFDAVVVCTGH 151 (448)
T ss_pred cc-eeEEEeeEEEEcccC
Confidence 11 257889999999994
No 170
>PRK07538 hypothetical protein; Provisional
Probab=98.91 E-value=1.6e-08 Score=105.09 Aligned_cols=158 Identities=20% Similarity=0.252 Sum_probs=82.2
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
+||+|||||++|+++|+.|++ .|++|+|+|+....+. .|.+ .++.. ........+.- ...+... ..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~---~g~g-i~l~p----~~~~~L~~lgl-~~~l~~~---~~ 66 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ--RGIEVVVFEAAPELRP---LGVG-INLLP----HAVRELAELGL-LDALDAI---GI 66 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCCcccc---cCcc-eeeCc----hHHHHHHHCCC-HHHHHhh---CC
Confidence 489999999999999999999 7999999996532111 0111 11111 00011111110 0000000 00
Q ss_pred ChHHHHHHHHhcCCcceeec----CCeeeec-CCChHHHHHHHHHHHHh-CC-CEEEcCceEEEEEecCCCCeEEEEEee
Q 011610 131 GPMDTMSWFSDHGVELKTED----DGRVFPV-SDSSSSVIDCLLTEAKH-RG-VVLQTGKVVTTASSDNAGRKFLLKVEK 203 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~----~g~~~p~-~~~a~~~~~~l~~~~~~-~G-v~i~~~~~V~~i~~~~~~~~~~V~~~~ 203 (481)
.. ....++...|....... .+..+|. ......+.+.|.+.+.+ .| +.|+++++|++++.++ +.+.+.+.+
T Consensus 67 ~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~--~~~~~~~~~ 143 (413)
T PRK07538 67 RT-RELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDA--DVTVVFLGD 143 (413)
T ss_pred CC-cceEEEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecC--CceEEEEec
Confidence 00 00000011111111000 0111111 12355677788887755 46 4699999999998765 334444443
Q ss_pred cccCceEEEEcCeEEEccCCCh
Q 011610 204 RTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 204 ~~~~~~~~i~ad~VIlAtG~~g 225 (481)
...+...+++||.||.|+|..+
T Consensus 144 ~~~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 144 RAGGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred cCCCccceEEeeEEEECCCCCH
Confidence 2223346899999999999865
No 171
>PRK07236 hypothetical protein; Provisional
Probab=98.89 E-value=5.2e-08 Score=100.20 Aligned_cols=149 Identities=16% Similarity=0.191 Sum_probs=79.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
+.+||+|||||++|+++|+.|++ .|++|+|+|+.. .... .|.| ..+.. ..........-... . ..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~---~g~g-i~l~~----~~~~~l~~lg~~~~-~-~~-- 70 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSPTELDG---RGAG-IVLQP----ELLRALAEAGVALP-A-DI-- 70 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCcCC---CCce-eEeCH----HHHHHHHHcCCCcc-c-cc--
Confidence 35899999999999999999999 799999999653 2110 0101 00000 00011111110000 0 00
Q ss_pred hcCChHHHHHHHHhcCCcceeecCCeeeec-CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc
Q 011610 128 SLHGPMDTMSWFSDHGVELKTEDDGRVFPV-SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM 206 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~-~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~ 206 (481)
.... ....++...|-.... ..++. ......+.+.|.+.+ .+++++++++|++++.++ +.+.|++.+
T Consensus 71 -~~~~-~~~~~~~~~g~~~~~----~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~v~~~~--- 137 (386)
T PRK07236 71 -GVPS-RERIYLDRDGRVVQR----RPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDG--DRVTARFAD--- 137 (386)
T ss_pred -ccCc-cceEEEeCCCCEeec----cCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecC--CeEEEEECC---
Confidence 0000 000000001100000 00010 012234445555433 346899999999998765 567777776
Q ss_pred CceEEEEcCeEEEccCCChh
Q 011610 207 NLVECIEADYLLIASGSSQQ 226 (481)
Q Consensus 207 ~~~~~i~ad~VIlAtG~~g~ 226 (481)
+.+++||.||.|+|..+.
T Consensus 138 --g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 138 --GRRETADLLVGADGGRST 155 (386)
T ss_pred --CCEEEeCEEEECCCCCch
Confidence 678999999999998764
No 172
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.89 E-value=2.2e-08 Score=104.91 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=31.2
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.|||+|||||++|+.||+.|++ .|.+|+|+|+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~ 35 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQS 35 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCC
Confidence 5899999999999999999999 78999999976
No 173
>PRK06753 hypothetical protein; Provisional
Probab=98.89 E-value=2.6e-08 Score=101.90 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLG 235 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G 235 (481)
....+.+.|.+.+. +.+|+++++|++++.++ +.+.|++.+ +.++.+|.||.|+|..+ .+.+.++
T Consensus 96 ~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~v~~~~-----g~~~~~~~vigadG~~S---~vR~~~~ 159 (373)
T PRK06753 96 HRQTLIDIIKSYVK--EDAIFTGKEVTKIENET--DKVTIHFAD-----GESEAFDLCIGADGIHS---KVRQSVN 159 (373)
T ss_pred cHHHHHHHHHHhCC--CceEEECCEEEEEEecC--CcEEEEECC-----CCEEecCEEEECCCcch---HHHHHhC
Confidence 34566677766654 46899999999998664 667787765 67899999999999765 3444444
No 174
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.88 E-value=1.4e-08 Score=107.98 Aligned_cols=142 Identities=23% Similarity=0.258 Sum_probs=83.2
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||++||++|..|.+ .|++|+++|+. .+| |.++..+... + .....|..-.....+. +..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e--~g~~~~~fE~~~~iG--------G~W~~~~~~~-~--g~~~~y~sl~~n~sk~-~~~ 67 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE--EGLEVTCFEKSDDIG--------GLWRYTENPE-D--GRSSVYDSLHTNTSKE-MMA 67 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH--TT-EEEEEESSSSSS--------GGGCHSTTCC-C--SEGGGSTT-B-SS-GG-GSC
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCCCeEEecCCCCC--------ccCeeCCcCC-C--CccccccceEEeeCch-Hhc
Confidence 579999999999999999998 79999999965 776 5454432110 0 0001111100000000 011
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCC--EEEcCceEEEEEecCC---CCeEEEEEeec
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGV--VLQTGKVVTTASSDNA---GRKFLLKVEKR 204 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~---~~~~~V~~~~~ 204 (481)
|+ ..++ .++-..|| ...++.++|...+++.++ .|+++|+|+++++.++ .+.|.|++.+
T Consensus 68 fs-----------dfp~--p~~~p~f~---~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~- 130 (531)
T PF00743_consen 68 FS-----------DFPF--PEDYPDFP---SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN- 130 (531)
T ss_dssp CT-----------TS-H--CCCCSSSE---BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-
T ss_pred CC-----------CcCC--CCCCCCCC---CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-
Confidence 11 0011 11112243 467899999999998876 6999999999987541 1468888753
Q ss_pred ccCceEEEEcCeEEEccCCC
Q 011610 205 TMNLVECIEADYLLIASGSS 224 (481)
Q Consensus 205 ~~~~~~~i~ad~VIlAtG~~ 224 (481)
.+...+-..|+||+|||..
T Consensus 131 -~g~~~~~~fD~VvvatG~~ 149 (531)
T PF00743_consen 131 -DGKEETEEFDAVVVATGHF 149 (531)
T ss_dssp -TTEEEEEEECEEEEEE-SS
T ss_pred -CCeEEEEEeCeEEEcCCCc
Confidence 2333455689999999953
No 175
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.88 E-value=5.1e-08 Score=99.46 Aligned_cols=51 Identities=20% Similarity=0.170 Sum_probs=38.9
Q ss_pred cccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610 426 TMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL 476 (481)
Q Consensus 426 t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~ 476 (481)
+|+.+.+||+|++|++..+....-.-..++|...|+++++++++..+.+.+
T Consensus 265 ~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~~~ 315 (364)
T TIGR03169 265 TLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQPL 315 (364)
T ss_pred ccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCCCC
Confidence 577778999999998887643322345688999999999999877655544
No 176
>PLN02546 glutathione reductase
Probab=98.88 E-value=4.7e-09 Score=112.31 Aligned_cols=144 Identities=19% Similarity=0.202 Sum_probs=80.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCce-EEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKV-KISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~-~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (481)
.+|||+|||+|++|+.||..|++ .|.+|+|+|++. ..++- .-.-||.| .|..|.+.+.+... ..+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~~~~~~~~~~~~~GGtC--~n~GCiPsK~l~~a-----a~~---- 144 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASN--FGASAAVCELPFATISSDTLGGVGGTC--VLRGCVPKKLLVYA-----SKY---- 144 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccccccccccCCCccCcc--cCcchHHHHHHHHH-----HHH----
Confidence 35899999999999999999999 799999999631 00000 00014788 78888774333211 000
Q ss_pred HhcCChHHHHHHHHhcCCcceeecCCeeeec-----CCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEE
Q 011610 127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPV-----SDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKV 201 (481)
Q Consensus 127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~-----~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~ 201 (481)
....+-...+|+...... ..-|+. ...-..+.+.+.+.+++.||+++.+ +++.+. . + .|.+
T Consensus 145 ------~~~~~~~~~~g~~~~~~~-~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd--~--~--~V~v 210 (558)
T PLN02546 145 ------SHEFEESRGFGWKYETEP-KHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVD--P--H--TVDV 210 (558)
T ss_pred ------HHHHHhhhhcCcccCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEcc--C--C--EEEE
Confidence 000011122343221000 000000 0011233455666677889999866 333332 1 2 3444
Q ss_pred eecccCceEEEEcCeEEEccCCCh
Q 011610 202 EKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 202 ~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
+ +..+.+|+||+|||+.+
T Consensus 211 ~------G~~~~~D~LVIATGs~p 228 (558)
T PLN02546 211 D------GKLYTARNILIAVGGRP 228 (558)
T ss_pred C------CEEEECCEEEEeCCCCC
Confidence 4 56799999999999865
No 177
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.88 E-value=4.8e-09 Score=109.73 Aligned_cols=70 Identities=9% Similarity=0.128 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHhCC---CEEEcCceEEEEEec-----CCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHH
Q 011610 161 SSSVIDCLLTEAKHRG---VVLQTGKVVTTASSD-----NAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAA 232 (481)
Q Consensus 161 a~~~~~~l~~~~~~~G---v~i~~~~~V~~i~~~-----~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~ 232 (481)
...+.+.|.+.+.+.+ ++++++++|++++.+ +++..+.|++.+ +++++||.||.|+|..+ .+-+
T Consensus 116 ~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~-----g~~i~a~llVgADG~~S---~vR~ 187 (437)
T TIGR01989 116 NDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSD-----GQVLYTKLLIGADGSNS---NVRK 187 (437)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcC-----CCEEEeeEEEEecCCCC---hhHH
Confidence 4567788888888765 999999999999752 112456777765 67899999999999876 3455
Q ss_pred HcCCCc
Q 011610 233 QLGHSI 238 (481)
Q Consensus 233 ~~G~~i 238 (481)
.+|+..
T Consensus 188 ~~gi~~ 193 (437)
T TIGR01989 188 AANIDT 193 (437)
T ss_pred HcCCCc
Confidence 667654
No 178
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.88 E-value=5.5e-08 Score=98.65 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 161 SSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 161 a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
-..+.+.|.+.+.+. |++++++++|++|++.+ ++.|.|++.+..++...+++|+.|++.+|+.. ..++++.|++
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a--L~LLqksgi~ 254 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA--LPLLQKSGIP 254 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCCEEEEEEecCCCCeEEEECCEEEECCchHh--HHHHHHcCCh
Confidence 345667788888777 99999999999999987 67799998765556678999999999988754 7889988875
No 179
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.87 E-value=1.7e-08 Score=90.23 Aligned_cols=145 Identities=19% Similarity=0.300 Sum_probs=80.0
Q ss_pred EEECCchHHHHHHHHHhcc---CCCCcEEEEeCCCCCCceEE-ecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 54 VVVGGGAAGVYGAIRAKTV---APKLNVVIIEKGKPLSKVKI-SGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 54 vIIGgG~aGl~aA~~la~~---~~g~~V~llE~~~~g~k~~~-sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
+|||+|++|++++.+|.+. ....+|+|+|+...|..... +....+.+.|.. .. .+ +. ..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~------------a~--~~--s~-~~ 63 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTP------------AD--QM--SL-FP 63 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhccc------------cc--cc--cc-cc
Confidence 5999999999999999985 24788999998665621100 000111122211 00 00 00 01
Q ss_pred CCh-HHHHHHHHhcCCcceeecCCeeee-cCCChH---HHHHHHHHHHHhCCCEEE-cCceEEEEEecCCCCeEEEEEee
Q 011610 130 HGP-MDTMSWFSDHGVELKTEDDGRVFP-VSDSSS---SVIDCLLTEAKHRGVVLQ-TGKVVTTASSDNAGRKFLLKVEK 203 (481)
Q Consensus 130 ~~~-~~~~~~~~~~Gi~~~~~~~g~~~p-~~~~a~---~~~~~l~~~~~~~Gv~i~-~~~~V~~i~~~~~~~~~~V~~~~ 203 (481)
-.+ .++.+|+++.+.+.........|+ ...-.. +..+.+.+.+ ..|++|. ...+|++|...+ +.+.|.+.+
T Consensus 64 ~~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~-~~~i~v~~~~~~V~~i~~~~--~~~~v~~~~ 140 (156)
T PF13454_consen 64 DDPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARL-PAGITVRHVRAEVVDIRRDD--DGYRVVTAD 140 (156)
T ss_pred ccCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhh-cCCcEEEEEeeEEEEEEEcC--CcEEEEECC
Confidence 112 467788888764100011112222 111111 1222222223 3465544 356899999876 567887776
Q ss_pred cccCceEEEEcCeEEEccCC
Q 011610 204 RTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 204 ~~~~~~~~i~ad~VIlAtG~ 223 (481)
+..+.+|.||+|||.
T Consensus 141 -----g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 141 -----GQSIRADAVVLATGH 155 (156)
T ss_pred -----CCEEEeCEEEECCCC
Confidence 678999999999994
No 180
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.87 E-value=2.5e-08 Score=105.05 Aligned_cols=138 Identities=25% Similarity=0.305 Sum_probs=76.8
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
+|||+|||||++|+.||+.|++ .|.+|+|+|++.+| |.| .|..+.+.+.+... . .+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~--~G~~v~lie~~~~G--------G~~--~~~gc~Psk~l~~~----~-~~~------ 57 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQ--LGLKVALVEKEYLG--------GTC--LNVGCIPTKALLHS----A-EVY------ 57 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCC--------Cce--eecCccchHHHHHH----h-hHH------
Confidence 4899999999999999999999 79999999997666 666 34444442111110 0 000
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecC-CCh----HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVS-DSS----SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR 204 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~a----~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~ 204 (481)
.... .+...|++..... ..++.- ... ..+...+...+++.|++++.+..+ .+ +. +.+.|...+
T Consensus 58 ---~~~~-~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~-~~--~~--~~~~v~~~~- 125 (461)
T TIGR01350 58 ---DEIK-HAKDYGIEVENVS--VDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAK-FL--DP--GTVLVTGEN- 125 (461)
T ss_pred ---HHHH-HHHhcCCCCCCCc--CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ec--cC--CEEEEecCC-
Confidence 0111 1233444321100 000000 000 111223344556779998876433 22 22 445555442
Q ss_pred ccCceEEEEcCeEEEccCCCh
Q 011610 205 TMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 205 ~~~~~~~i~ad~VIlAtG~~g 225 (481)
+..++++|+||+|||+.+
T Consensus 126 ---g~~~~~~d~lVlAtG~~p 143 (461)
T TIGR01350 126 ---GEETLTAKNIIIATGSRP 143 (461)
T ss_pred ---CcEEEEeCEEEEcCCCCC
Confidence 125799999999999865
No 181
>PRK13748 putative mercuric reductase; Provisional
Probab=98.87 E-value=4.2e-08 Score=105.93 Aligned_cols=68 Identities=16% Similarity=0.300 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610 163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRL-AAQLGHSI 238 (481)
Q Consensus 163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i 238 (481)
++.+.+.+.+++.||++++++.|.+++.++ +.+.+.+.+ .++.+|.||+|+|..+....+ ++..|+++
T Consensus 311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~--~~~~v~~~~------~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~ 379 (561)
T PRK13748 311 AIGEAVTAAFRAEGIEVLEHTQASQVAHVD--GEFVLTTGH------GELRADKLLVATGRAPNTRSLALDAAGVTV 379 (561)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEecC------CeEEeCEEEEccCCCcCCCCcCchhcCceE
Confidence 455667788889999999999999998654 455565543 369999999999977643222 34455544
No 182
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.86 E-value=4.1e-08 Score=103.49 Aligned_cols=143 Identities=18% Similarity=0.266 Sum_probs=82.2
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
+.||+|||+|++|+.+|..|++ .|.+|+|+|++..| |.| .|..|.+.+.+.. ..
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~~~g--------G~c--~~~gciPsK~l~~-----------~a--- 54 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQ--LGADVTVIERDGLG--------GAA--VLTDCVPSKTLIA-----------TA--- 54 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCCC--------Ccc--cccCCcchHHHHH-----------HH---
Confidence 3589999999999999999999 79999999987765 788 4556655322221 10
Q ss_pred CChHHHHHHHHhcCCccee-ecCCeeeecC-CC----hHHHHHHHHHHHHhCCCEEEcCceEEEEE--ecCCCCeEEEEE
Q 011610 130 HGPMDTMSWFSDHGVELKT-EDDGRVFPVS-DS----SSSVIDCLLTEAKHRGVVLQTGKVVTTAS--SDNAGRKFLLKV 201 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~-~~~g~~~p~~-~~----a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~--~~~~~~~~~V~~ 201 (481)
...+..+.....|+.... +....-++.- .. ...+.+.+.+.+++.||+++.++ +..+. .++ +.+.|.+
T Consensus 55 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~--~~v~V~~ 130 (466)
T PRK07845 55 -EVRTELRRAAELGIRFIDDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLGP--HRVKVTT 130 (466)
T ss_pred -HHHHHHHHHHhCCcccccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCC--CEEEEEe
Confidence 000111123334443210 0000000000 00 11123345566778899998774 33332 222 5566665
Q ss_pred eecccCceEEEEcCeEEEccCCCh
Q 011610 202 EKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 202 ~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
.+ +...++.+|+||+|||+.+
T Consensus 131 ~~---g~~~~~~~d~lViATGs~p 151 (466)
T PRK07845 131 AD---GGEETLDADVVLIATGASP 151 (466)
T ss_pred CC---CceEEEecCEEEEcCCCCC
Confidence 43 1113799999999999865
No 183
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.86 E-value=3.9e-08 Score=110.02 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=35.1
Q ss_pred HHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610 172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 172 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
.++.|++++.+++|+.+..+. ..|.+.+ +..+.+|++|+|||+.+
T Consensus 69 ~~~~gI~~~~g~~V~~Id~~~----~~V~~~~-----G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 69 YEKHGIKVLVGERAITINRQE----KVIHSSA-----GRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHhCCCEEEcCCEEEEEeCCC----cEEEECC-----CcEEECCEEEECCCCCc
Confidence 345799999999999997542 3455654 56899999999999865
No 184
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.85 E-value=6.1e-08 Score=108.27 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=35.8
Q ss_pred HHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610 172 AKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 172 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
+++.|++++.+++|+.|..+. ..|.+.+ +.++.+|++|+|||+.+
T Consensus 64 ~~~~gv~~~~g~~V~~Id~~~----k~V~~~~-----g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 64 YEKHGITLYTGETVIQIDTDQ----KQVITDA-----GRTLSYDKLILATGSYP 108 (785)
T ss_pred HHHCCCEEEcCCeEEEEECCC----CEEEECC-----CcEeeCCEEEECCCCCc
Confidence 356799999999999997643 3466665 66899999999999865
No 185
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.85 E-value=3.8e-08 Score=104.22 Aligned_cols=65 Identities=23% Similarity=0.370 Sum_probs=52.4
Q ss_pred CeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610 152 GRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 152 g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 223 (481)
|..||. .....+.++|.+.++++|++|+++++|.+|..++ +..+++++.+ +..+.+|.||.+..-
T Consensus 215 G~~~p~-GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g~g~~~~~~~-----g~~~~ad~vv~~~~~ 279 (487)
T COG1233 215 GVFYPR-GGMGALVDALAELAREHGGEIRTGAEVSQILVEG-GKGVGVRTSD-----GENIEADAVVSNADP 279 (487)
T ss_pred Ceeeee-CCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeC-CcceEEeccc-----cceeccceeEecCch
Confidence 455654 5677899999999999999999999999999886 4556777664 457899999987653
No 186
>PRK05868 hypothetical protein; Validated
Probab=98.85 E-value=2.8e-08 Score=101.71 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610 163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 226 (481)
Q Consensus 163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~ 226 (481)
++.+.|.+ +...|++++++++|++++.++ +.+.|++++ +.+++||.||.|+|..+.
T Consensus 106 ~L~~~l~~-~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~d-----g~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 106 DLVELLYG-ATQPSVEYLFDDSISTLQDDG--DSVRVTFER-----AAAREFDLVIGADGLHSN 161 (372)
T ss_pred HHHHHHHH-hccCCcEEEeCCEEEEEEecC--CeEEEEECC-----CCeEEeCEEEECCCCCch
Confidence 44454443 335689999999999998654 667788776 668999999999997763
No 187
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.84 E-value=5.3e-08 Score=100.33 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe-ecccCceEEEEcCeEEEccCCCh
Q 011610 162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE-KRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~-~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
..+...|.+.+.+.|+.++++++++.+...+ +....|++. + +...+++||.||.|+|..+
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~-~~~~~V~~~~~---g~~~~i~adlvIGADG~~S 163 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLA-GDRPYVTFERD---GERHRLDCDFIAGCDGFHG 163 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEecC-CCccEEEEEEC---CeEEEEEeCEEEECCCCch
Confidence 4566778888888899999999988876533 244556654 3 1124799999999999876
No 188
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.83 E-value=2.1e-08 Score=105.91 Aligned_cols=49 Identities=35% Similarity=0.507 Sum_probs=41.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCC-CCcEEEEeCC---------CCCCceEEecCCceeeccCCCcchh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAP-KLNVVIIEKG---------KPLSKVKISGGGRCNVTNGHCADKM 109 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~-g~~V~llE~~---------~~g~k~~~sG~g~~n~~~~~~~~~~ 109 (481)
.+|||+||||||+|..||+.+++ . |.+|+|||++ .+ ||.| .|..|.+++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~--~~g~~V~lie~~~~~~~~~~~~~--------GGtC--ln~GCiPsK 60 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAAT--LYKKRVAVIDVQTHHGPPHYAAL--------GGTC--VNVGCVPKK 60 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHH--hcCCEEEEEecccCccccccCCc--------cCee--cCcCCccHH
Confidence 46999999999999999999999 5 8999999973 33 4888 888887743
No 189
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.83 E-value=7.2e-08 Score=100.49 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=64.4
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcc
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIV 239 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~ 239 (481)
++..+..+|...+.+.|+.|..++.|++|.... ++.+.|.|.. ..|++.+||.|+|-|. ..+-+..|.++
T Consensus 185 DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~-~~~~gVeT~~------G~iet~~~VNaaGvWA--r~Vg~m~gvkv- 254 (856)
T KOG2844|consen 185 DPAGLCQALARAASALGALVIENCPVTGLHVET-DKFGGVETPH------GSIETECVVNAAGVWA--REVGAMAGVKV- 254 (856)
T ss_pred CHHHHHHHHHHHHHhcCcEEEecCCcceEEeec-CCccceeccC------cceecceEEechhHHH--HHhhhhcCCcc-
Confidence 567788999999999999999999999998765 5667898884 6799999999999876 34555566553
Q ss_pred cCCCceeEeeeC
Q 011610 240 DPVPSLFTFKIA 251 (481)
Q Consensus 240 ~~~p~l~~~~~~ 251 (481)
|+.|....+...
T Consensus 255 PL~p~~H~YvvT 266 (856)
T KOG2844|consen 255 PLVPMHHAYVVT 266 (856)
T ss_pred cceeeeeeEEEe
Confidence 666665555444
No 190
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.83 E-value=2.3e-08 Score=103.38 Aligned_cols=62 Identities=19% Similarity=0.361 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610 160 SSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
....+.+.|.+.+.+ .+++++++++|+++..++ +.+.|++.. .+++..+.||.||.|+|..+
T Consensus 105 ~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~--~~v~v~~~~--~~~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 105 HRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG--NSITATIIR--TNSVETVSAAYLIACDGVWS 167 (400)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC--CceEEEEEe--CCCCcEEecCEEEECCCccH
Confidence 456788888888866 489999999999998764 556666532 11245799999999999875
No 191
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.82 E-value=1.8e-08 Score=109.77 Aligned_cols=177 Identities=18% Similarity=0.211 Sum_probs=92.0
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCC-CCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchh
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAP-KLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRG 124 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~-g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (481)
.+.++||+||||||+||++|+.|++ . |.+|+|||+. .... .|+....+. ...++++.+.-... +.+
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar--~~Gi~v~IiE~~~~~~~------~grA~gl~p---rtleiL~~lGl~d~-l~~ 96 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSA--FPDITTRIVERKPGRLE------LGQADGIAC---RTMEMFQAFGFAER-ILK 96 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhc--CCCCcEEEEEcCCCCCC------CCeeeEECh---HHHHHHHhccchHH-HHh
Confidence 3457899999999999999999998 4 8999999954 3221 111110110 11122222211000 000
Q ss_pred hH-----HhcCChH-HHHHHHHhcCCcceeecCCeeeec-CCChHHHHHHHHHHHHhCC--CEEEcCceEEEEEecCC-C
Q 011610 125 SF-----FSLHGPM-DTMSWFSDHGVELKTEDDGRVFPV-SDSSSSVIDCLLTEAKHRG--VVLQTGKVVTTASSDNA-G 194 (481)
Q Consensus 125 ~~-----l~~~~~~-~~~~~~~~~Gi~~~~~~~g~~~p~-~~~a~~~~~~l~~~~~~~G--v~i~~~~~V~~i~~~~~-~ 194 (481)
.. +..+... +....+...+...........||. ......+.+.|.+.+.+.| +++++++++++++.+++ +
T Consensus 97 ~g~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~ 176 (634)
T PRK08294 97 EAYWINETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGE 176 (634)
T ss_pred hcccccceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCC
Confidence 00 0000000 000000000000000000011221 1233456788888888776 47889999999987631 1
Q ss_pred CeEEEEEeecc---cCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 195 RKFLLKVEKRT---MNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 195 ~~~~V~~~~~~---~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
..+.|++.+.. ++..++++||+||.|+|+.+ .+-+.+|+..
T Consensus 177 ~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S---~VR~~lgi~~ 220 (634)
T PRK08294 177 YPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARS---RVRKAIGREL 220 (634)
T ss_pred CCEEEEEEECCCCCCCceEEEEeCEEEECCCCch---HHHHhcCCCc
Confidence 34666665311 12236899999999999875 4555667654
No 192
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.82 E-value=3e-08 Score=104.37 Aligned_cols=138 Identities=24% Similarity=0.338 Sum_probs=78.0
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLHG 131 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 131 (481)
+|+||||||+|++||..|++ .|.+|+|+|++..| |.| .|..|.+++.+.. .. ..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~--~g~~V~lie~~~~G--------G~c--~n~gciPsk~l~~-----------~a-~~-- 55 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ--NGKNVTLIDEADLG--------GTC--LNEGCMPTKSLLE-----------SA-EV-- 55 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh--CCCcEEEEECCccc--------ccC--CCCccccchHHHH-----------HH-HH--
Confidence 89999999999999999999 79999999988765 778 6777766332221 10 00
Q ss_pred hHHHHHHHHhcCCcceeecCCeeeec-CCChHH----HHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc
Q 011610 132 PMDTMSWFSDHGVELKTEDDGRVFPV-SDSSSS----VIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM 206 (481)
Q Consensus 132 ~~~~~~~~~~~Gi~~~~~~~g~~~p~-~~~a~~----~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~ 206 (481)
.+..+.....|+....+....-+.. ...... +.+.....+++.+++++.+. +..+ + .+.+.|..++
T Consensus 56 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~--~~~v~v~~~~--- 126 (458)
T PRK06912 56 -HDKVKKANHFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGK-ASFE--T--DHRVRVEYGD--- 126 (458)
T ss_pred -HHHHHHHHhcCccccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc--c--CCEEEEeeCC---
Confidence 0111222334543221100000000 000011 11223344556788887653 3222 2 2455565432
Q ss_pred CceEEEEcCeEEEccCCCh
Q 011610 207 NLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 207 ~~~~~i~ad~VIlAtG~~g 225 (481)
+..++++|+||+|||+.+
T Consensus 127 -~~~~~~~d~lviATGs~p 144 (458)
T PRK06912 127 -KEEVVDAEQFIIAAGSEP 144 (458)
T ss_pred -CcEEEECCEEEEeCCCCC
Confidence 124799999999999865
No 193
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.82 E-value=2.1e-06 Score=90.68 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCCEEEcCceEEEEEecCC-CC---eEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610 162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNA-GR---KFLLKVEKRTMNLVECIEADYLLIASGSS 224 (481)
Q Consensus 162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~~---~~~V~~~~~~~~~~~~i~ad~VIlAtG~~ 224 (481)
..+.+.+.+.+++.|++|+++++|++|+.++. ++ .+.|++.+ .+++..+.||+||+|+..+
T Consensus 219 ~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~--g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 219 KYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK--PEGKKVIKADAYVAACDVP 283 (474)
T ss_pred hhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec--CCcceEEECCEEEECCChH
Confidence 33556688888899999999999999987530 11 23444542 1112568999999999864
No 194
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.81 E-value=1.2e-07 Score=100.69 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610 163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 226 (481)
Q Consensus 163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~ 226 (481)
++.+.+.+.+++.||+++.++.+.++...+ +...+.+.+ +.++.+|.||+|+|..+.
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~--~~~~v~~~~-----g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMD--DKIKVLFSD-----GTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEcC--CeEEEEECC-----CCEEEcCEEEEeeCCCCC
Confidence 445667788888999999999999998654 445566554 457899999999997654
No 195
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.79 E-value=3.4e-08 Score=104.15 Aligned_cols=46 Identities=35% Similarity=0.453 Sum_probs=39.4
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcc
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCAD 107 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~ 107 (481)
+|||+||||||+|++||+.|++ .|.+|+|+|++.+| |.| .|..+.+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~--~G~~V~lie~~~~G--------G~c--~~~gciP 49 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQ--LGLKTAVVEKKYWG--------GVC--LNVGCIP 49 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCC--------Cce--ecCCccc
Confidence 5899999999999999999999 79999999987766 777 5555544
No 196
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.79 E-value=1.4e-07 Score=100.37 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
....+.++|.+.++++|++|+++++|.+|..++ +..++|++.+ +.++.||.||+|+|.+.
T Consensus 227 G~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~-----g~~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 227 GVGQIAESLVKGLEKHGGQIRYRARVTKIILEN-GKAVGVKLAD-----GEKIYAKRIVSNATRWD 286 (493)
T ss_pred hHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-CcEEEEEeCC-----CCEEEcCEEEECCChHH
Confidence 446788999999999999999999999998775 5667888875 66899999999998654
No 197
>PRK07233 hypothetical protein; Provisional
Probab=98.79 E-value=1.9e-07 Score=97.20 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610 159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 223 (481)
+....+.+.|.+.+++.|++|+++++|++|+.++ +.+.+...+ +..+.||+||+|+..
T Consensus 195 gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~--~~~~~~~~~-----~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 195 GGFATLIDALAEAIEARGGEIRLGTPVTSVVIDG--GGVTGVEVD-----GEEEDFDAVISTAPP 252 (434)
T ss_pred CCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcC--CceEEEEeC-----CceEECCEEEECCCH
Confidence 4466788999999999999999999999998765 444433333 467999999999974
No 198
>PRK14727 putative mercuric reductase; Provisional
Probab=98.77 E-value=4.5e-08 Score=103.56 Aligned_cols=47 Identities=30% Similarity=0.416 Sum_probs=39.9
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcc
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCAD 107 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~ 107 (481)
..+||+|||+|++|+.+|+.|++ .|.+|+|+|++ .+| |.| .|..|.+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~--~g~~v~~ie~~~~~G--------G~c--~n~GciP 62 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAE--HGARVTIIEGADVIG--------GCC--VNVGCVP 62 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCcce--------eEe--ccccccc
Confidence 56999999999999999999999 78999999976 666 667 5666655
No 199
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.76 E-value=1.4e-07 Score=99.63 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCC--C-eEEEEEeecccCc-eEEEEcCeEEEccCC
Q 011610 159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAG--R-KFLLKVEKRTMNL-VECIEADYLLIASGS 223 (481)
Q Consensus 159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~--~-~~~V~~~~~~~~~-~~~i~ad~VIlAtG~ 223 (481)
++...++.-|.+.++++||+|+++++|++|..+.++ + ..+|.+.....+. -....+|.||+|+|+
T Consensus 223 nqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs 291 (576)
T PRK13977 223 NQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGS 291 (576)
T ss_pred CchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCc
Confidence 355788899999999999999999999999875212 2 2355554201111 124567999999996
No 200
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.76 E-value=1e-07 Score=97.66 Aligned_cols=136 Identities=21% Similarity=0.225 Sum_probs=80.9
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
||+|||||+||+++|++|++..+|.+|+|||+. ..+. ...+ +...... ....+-....+.+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~------~~~~--tW~~~~~----------~~~~~~~~v~~~w 62 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPW------PNDR--TWCFWEK----------DLGPLDSLVSHRW 62 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccc------cCCc--ccccccc----------cccchHHHHheec
Confidence 899999999999999999332389999999954 4321 0111 1100000 0000100000111
Q ss_pred ChHHHHHHHHhcCCcceeecC-----CeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecc
Q 011610 131 GPMDTMSWFSDHGVELKTEDD-----GRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRT 205 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~-----g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~ 205 (481)
. +..+..... .+.| ...+...+.+.+.+.+. .+..++.+++|.+|+..+ ..+.|++++
T Consensus 63 ~-----------~~~v~~~~~~~~~~~~~Y-~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~--~~~~v~~~~-- 125 (374)
T PF05834_consen 63 S-----------GWRVYFPDGSRILIDYPY-CMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETG--DGVLVVLAD-- 125 (374)
T ss_pred C-----------ceEEEeCCCceEEcccce-EEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecC--ceEEEEECC--
Confidence 1 111111110 1122 12467788888998888 445677889999998775 556677776
Q ss_pred cCceEEEEcCeEEEccCCCh
Q 011610 206 MNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 206 ~~~~~~i~ad~VIlAtG~~g 225 (481)
+.+++|+.||.|+|..+
T Consensus 126 ---g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 126 ---GRTIRARVVVDARGPSS 142 (374)
T ss_pred ---CCEEEeeEEEECCCccc
Confidence 67999999999999543
No 201
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.75 E-value=6.1e-08 Score=101.18 Aligned_cols=134 Identities=15% Similarity=0.214 Sum_probs=79.0
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCc-EEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchh
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRG 124 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~-V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (481)
..+.+||+|||||++|+++|++|.+ .|.. ++|+||+ ++| |.++...-.. ...+.+..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~--~g~~~~~i~Ek~~~~G--------g~W~~~ry~~---------l~~~~p~~-- 63 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQ--AGVPDFVIFEKRDDVG--------GTWRYNRYPG---------LRLDSPKW-- 63 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHH--cCCCcEEEEEccCCcC--------CcchhccCCc---------eEECCchh--
Confidence 3467899999999999999999999 6777 9999966 666 3332211100 00000000
Q ss_pred hHHhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCC--EEEcCceEEEEEecCCCCeEEEEEe
Q 011610 125 SFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGV--VLQTGKVVTTASSDNAGRKFLLKVE 202 (481)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~~~~~~V~~~ 202 (481)
+..|. +.++. ....|| ....+.+.+...+++.+. +|.+++.|..+..++++..|.|+++
T Consensus 64 --~~~~~-----------~~p~~---~~~~~~---~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~ 124 (443)
T COG2072 64 --LLGFP-----------FLPFR---WDEAFA---PFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTS 124 (443)
T ss_pred --eeccC-----------CCccC---CcccCC---CcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEc
Confidence 00110 00010 112222 112256666777776664 4666777777766653468999988
Q ss_pred ecccCceEEEEcCeEEEccCC
Q 011610 203 KRTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 203 ~~~~~~~~~i~ad~VIlAtG~ 223 (481)
+. ...++.||.||+|||.
T Consensus 125 ~~---~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 125 DG---GTGELTADFVVVATGH 142 (443)
T ss_pred CC---CeeeEecCEEEEeecC
Confidence 51 1112779999999995
No 202
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.75 E-value=5.4e-08 Score=102.50 Aligned_cols=37 Identities=35% Similarity=0.415 Sum_probs=33.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g 87 (481)
.+|||+|||||++|++||..|++ .|.+|+|||++..|
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~G 38 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK--LGKKVALIEKGPLG 38 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCccc
Confidence 35999999999999999999999 79999999996665
No 203
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.74 E-value=3.4e-07 Score=88.60 Aligned_cols=185 Identities=18% Similarity=0.218 Sum_probs=96.9
Q ss_pred CCCeEEEECCchHHHHHHHHHhcc--CCCCcEEEEeCCCCC--CceEEecCCcee-eccCCCcchhHHhhccCCCChhch
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTV--APKLNVVIIEKGKPL--SKVKISGGGRCN-VTNGHCADKMILAGHYPRGHKEFR 123 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~--~~g~~V~llE~~~~g--~k~~~sG~g~~n-~~~~~~~~~~~~~~~~~~~~~~~~ 123 (481)
.++||+|||||-+|.+.|++|+++ ..|++|+|+|++..- .+..++-||-|. ++-.+..+..-|...|..+..+..
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ehl 164 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREHL 164 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHhh
Confidence 578999999999999999999873 247999999987443 233344455553 332222221111111111100000
Q ss_pred hh-----HHhcCC--------hHH-------HHHHHHhcCCccee---ecCCeeeecC-----------------CChHH
Q 011610 124 GS-----FFSLHG--------PMD-------TMSWFSDHGVELKT---EDDGRVFPVS-----------------DSSSS 163 (481)
Q Consensus 124 ~~-----~l~~~~--------~~~-------~~~~~~~~Gi~~~~---~~~g~~~p~~-----------------~~a~~ 163 (481)
.. .--.|. .++ ..+...+.|..... +.-..-||+- .+...
T Consensus 165 ~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwfdpw~ 244 (509)
T KOG2853|consen 165 GILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGWFDPWA 244 (509)
T ss_pred ccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccccccCHHH
Confidence 00 000000 011 11112223322110 0001223321 24567
Q ss_pred HHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeec----------------ccCceEEEEcCeEEEccCCChhH
Q 011610 164 VIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKR----------------TMNLVECIEADYLLIASGSSQQG 227 (481)
Q Consensus 164 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~----------------~~~~~~~i~ad~VIlAtG~~g~g 227 (481)
++..+.+.+..+|+.+..+ +|++++.+. ...+.+.+++. .+.-.+.+.++.+|+|.|+|.
T Consensus 245 LLs~~rrk~~~lGv~f~~G-eV~~Fef~s-qr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s-- 320 (509)
T KOG2853|consen 245 LLSGIRRKAITLGVQFVKG-EVVGFEFES-QRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWS-- 320 (509)
T ss_pred HHHHHHHHhhhhcceEecc-eEEEEEEec-ccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccH--
Confidence 8889999999999998654 777776542 11111111110 011235789999999999987
Q ss_pred HHHHHHcCCC
Q 011610 228 HRLAAQLGHS 237 (481)
Q Consensus 228 ~~la~~~G~~ 237 (481)
-++|+-+|+-
T Consensus 321 ~QvArlAgIG 330 (509)
T KOG2853|consen 321 GQVARLAGIG 330 (509)
T ss_pred HHHHHHhccC
Confidence 4678777765
No 204
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.71 E-value=6.1e-08 Score=100.65 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 226 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~ 226 (481)
...++.+.|.+.+. .+.++++++|++++.++ +.+.|.+.+ +.++.+|.||.|+|.++.
T Consensus 103 ~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~--~~~~v~~~~-----g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 103 HRADFLDALLKHLP--EGIASFGKRATQIEEQA--EEVQVLFTD-----GTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CHHHHHHHHHHhCC--CceEEcCCEEEEEEecC--CcEEEEEcC-----CCEEEeeEEEECCCccHH
Confidence 34567777776653 35688999999998765 567887775 568999999999998763
No 205
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.67 E-value=2.6e-08 Score=104.38 Aligned_cols=59 Identities=25% Similarity=0.378 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCe-EEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRK-FLLKVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~-~~V~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
+...+.+.|.+.+.+.||+++.++ |+++..++ ++. ..|++.+ +.+++||.||-|||..+
T Consensus 152 DR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~-----g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 152 DRAKFDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDD-----GRTIEADFFIDASGRRS 211 (454)
T ss_dssp EHHHHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETT-----SEEEEESEEEE-SGGG-
T ss_pred eHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECC-----CCEEEEeEEEECCCccc
Confidence 577888999999999999999884 88887765 343 4677766 78899999999999543
No 206
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.1e-08 Score=97.09 Aligned_cols=57 Identities=12% Similarity=0.186 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCCCEEEcCceEEEEEecCC-CCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610 162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNA-GRKFLLKVEKRTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 223 (481)
..+..+|.+..++..|.++.-.+.+++++.+. ++-+.|++++ +-.+.++.||++||+
T Consensus 266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~n-----GavLkaktvIlstGA 323 (520)
T COG3634 266 PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELAN-----GAVLKARTVILATGA 323 (520)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecC-----CceeccceEEEecCc
Confidence 45667777777888888888888888876321 3457888887 789999999999996
No 207
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.67 E-value=1e-07 Score=89.78 Aligned_cols=145 Identities=17% Similarity=0.202 Sum_probs=78.8
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||+|++|++||+.|++ .|.+|+|+||+ .+| ||.-........ .++-.+|........
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~GvG--------GRlAtRRl~~g~-~DhGAqYfk~~~~~F------ 64 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALRE--AGREVTVFEKGRGVG--------GRLATRRLDGGR-FDHGAQYFKPRDELF------ 64 (331)
T ss_pred CcEEEEccchHHHHHHHHHHh--cCcEEEEEEcCCCcc--------cchheeccCCcc-ccccceeecCCchHH------
Confidence 479999999999999999999 89999999976 344 332111111000 011112222111111
Q ss_pred CChHHHHHHHHhcCCc-ce-----eecCCeeeecCCCh----HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEE
Q 011610 130 HGPMDTMSWFSDHGVE-LK-----TEDDGRVFPVSDSS----SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLL 199 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~-~~-----~~~~g~~~p~~~~a----~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V 199 (481)
.+..+.+.+.|+. .. ...++..-|..++. ..=+.+|.+.+ ....+|.++++|+++...+ +.|++
T Consensus 65 ---~~~Ve~~~~~glV~~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-AtdL~V~~~~rVt~v~~~~--~~W~l 138 (331)
T COG3380 65 ---LRAVEALRDDGLVDVWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-ATDLTVVLETRVTEVARTD--NDWTL 138 (331)
T ss_pred ---HHHHHHHHhCCceeeccccccccccCCCCCCCCCCccccCcchHHHHHHH-hccchhhhhhhhhhheecC--CeeEE
Confidence 1222223333321 11 01111111111111 11123333322 2467889999999998875 78999
Q ss_pred EEeecccCceEEEEcCeEEEccC
Q 011610 200 KVEKRTMNLVECIEADYLLIASG 222 (481)
Q Consensus 200 ~~~~~~~~~~~~i~ad~VIlAtG 222 (481)
++++ +.+...+|.||+|.=
T Consensus 139 ~~~~----g~~~~~~d~vvla~P 157 (331)
T COG3380 139 HTDD----GTRHTQFDDVVLAIP 157 (331)
T ss_pred EecC----CCcccccceEEEecC
Confidence 9864 246788999999864
No 208
>PRK07846 mycothione reductase; Reviewed
Probab=98.66 E-value=9.2e-08 Score=100.39 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=38.2
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchh
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKM 109 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~ 109 (481)
+|||+||||||+|..||..+ .|.+|+|+|++.+| |.| .|..|.+++
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~----~G~~V~lie~~~~G--------GtC--~n~GCiPsK 46 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF----ADKRIAIVEKGTFG--------GTC--LNVGCIPTK 46 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH----CCCeEEEEeCCCCC--------Ccc--cCcCcchhH
Confidence 38999999999999988653 48999999988776 788 787787743
No 209
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.65 E-value=1.2e-07 Score=100.27 Aligned_cols=55 Identities=29% Similarity=0.471 Sum_probs=41.0
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCce-EEecCCceeeccCCCcch
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKV-KISGGGRCNVTNGHCADK 108 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~-~~sG~g~~n~~~~~~~~~ 108 (481)
.|||+|||+|++|+.||+.+++ .|.+|+|+|+..+..+- ...-||.| .|..|.++
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~--~G~~v~lie~~~~~~~~~~~~~GGtc--~n~GCiPs 57 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD--YGAKVMLLDFVTPTPLGTRWGIGGTC--VNVGCIPK 57 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCCCcceeccccc--cccCcCch
Confidence 5899999999999999999999 79999999964321100 00125778 77777764
No 210
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.64 E-value=8.7e-08 Score=100.63 Aligned_cols=46 Identities=26% Similarity=0.410 Sum_probs=38.0
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchh
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKM 109 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~ 109 (481)
+|||+|||+|++|..||.. . .|.+|+|+|++.+| |.| .|..|.+++
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~--~g~~V~lie~~~~G--------GtC--~n~GCiPsK 47 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--F--ADKRIAIVEKGTFG--------GTC--LNVGCIPTK 47 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--H--CCCeEEEEeCCCCC--------Cee--eccCccchH
Confidence 5899999999999988644 3 48999999988776 788 788887743
No 211
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.63 E-value=1e-07 Score=103.52 Aligned_cols=48 Identities=29% Similarity=0.389 Sum_probs=41.4
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC--CCCCceEEecCCceeeccCCCcchh
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG--KPLSKVKISGGGRCNVTNGHCADKM 109 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~--~~g~k~~~sG~g~~n~~~~~~~~~~ 109 (481)
+|||+|||+|++|..||+.+++ .|++|+|||++ .+| |.| .|..|.+++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~--~G~kV~lie~~~~~lG--------GtC--vn~GCiPsK 165 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAME--RGLKVIIFTGDDDSIG--------GTC--VNVGCIPSK 165 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCccc--------cce--eEeCCcchH
Confidence 6899999999999999999999 79999999964 555 788 777777743
No 212
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.63 E-value=2.9e-07 Score=98.14 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 223 (481)
....+.++|.+.+++.|++|+++++|.+|..++ ++.+.|++.+ ++++.||.||+|++.
T Consensus 217 G~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~~~~-----g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 217 GTGALVAAMAKLAEDLGGELRLNAEVIRIETEG-GRATAVHLAD-----GERLDADAVVSNADL 274 (502)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-CEEEEEEECC-----CCEEECCEEEECCcH
Confidence 456788999999999999999999999998765 4456788775 568999999998874
No 213
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.63 E-value=6.7e-08 Score=107.69 Aligned_cols=142 Identities=19% Similarity=0.298 Sum_probs=79.9
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
++|+||||||+|+++|+.|++.++|++|+|+|++...+. .| ..+.++... ...+......+.......+
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~---~G-~Gi~ls~~~-------l~~L~~~~~~~~~~~~~~~ 69 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDT---FG-WGVVFSDAT-------LGNLRAADPVSAAAIGDAF 69 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcc---cC-cceEccHHH-------HHHHHhcCHHHHHHHHHhc
Confidence 489999999999999999999434899999996643210 11 112222110 0111101111111111111
Q ss_pred ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE 210 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~ 210 (481)
...+...++ ..|.. ....+..|. .....++.+.|.+++.+.||+++++++|.++.. .
T Consensus 70 ~~~~~~~~~-~~g~~--~~~~g~~~~-~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------------~ 126 (765)
T PRK08255 70 NHWDDIDVH-FKGRR--IRSGGHGFA-GIGRKRLLNILQARCEELGVKLVFETEVPDDQA-------------------L 126 (765)
T ss_pred ccCCceEEE-ECCEE--EEECCeeEe-cCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh-------------------h
Confidence 100000010 01111 112344442 356788999999999999999999998765421 1
Q ss_pred EEEcCeEEEccCCChh
Q 011610 211 CIEADYLLIASGSSQQ 226 (481)
Q Consensus 211 ~i~ad~VIlAtG~~g~ 226 (481)
...+|.||.|+|..+.
T Consensus 127 ~~~~D~VVgADG~~S~ 142 (765)
T PRK08255 127 AADADLVIASDGLNSR 142 (765)
T ss_pred hcCCCEEEEcCCCCHH
Confidence 2468999999997654
No 214
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.61 E-value=9.6e-07 Score=90.40 Aligned_cols=69 Identities=22% Similarity=0.233 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCC-hhHHHHHHHcC
Q 011610 161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS-QQGHRLAAQLG 235 (481)
Q Consensus 161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~-g~g~~la~~~G 235 (481)
...+.++|.+.+++.|++++.+++|.++..++ ++...|.+++ ++...++||.||+|+|++ +. .++++++
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~~v~~V~t~~---g~~~~l~AD~vVLAaGaw~S~--gL~a~l~ 331 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-NRVTRIHTRN---HRDIPLRADHFVLASGSFFSN--GLVAEFD 331 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-CeEEEEEecC---CccceEECCEEEEccCCCcCH--HHHhhcC
Confidence 44667778899999999999999999998775 3334455553 112479999999999998 63 3455544
No 215
>PRK07208 hypothetical protein; Provisional
Probab=98.61 E-value=1.4e-06 Score=92.20 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 223 (481)
....+.+.|.+.+++.|++|+++++|++|..++ ++...+.+.+..++....+.||.||.|+-.
T Consensus 216 G~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 216 GPGQLWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred CcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 345678889999999999999999999999875 333322222101122246899999998764
No 216
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.61 E-value=8.9e-07 Score=87.54 Aligned_cols=73 Identities=22% Similarity=0.206 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhCCCEEEcCceEEEEEecC-CCCeEEEEEeecccC-ceEEEEcCeEEEccCCChhHHHHHHHcC
Q 011610 162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDN-AGRKFLLKVEKRTMN-LVECIEADYLLIASGSSQQGHRLAAQLG 235 (481)
Q Consensus 162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~~~~~V~~~~~~~~-~~~~i~ad~VIlAtG~~g~g~~la~~~G 235 (481)
......|.....+.+++|++++.|++|..++ ++....|++.+.... ....+.++.||+|.|+-.+ .+++..-|
T Consensus 193 s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~T-p~LLl~SG 267 (296)
T PF00732_consen 193 SAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGT-PRLLLRSG 267 (296)
T ss_dssp HHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHH-HHHHHHTT
T ss_pred ehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCC-hhhhcccc
Confidence 3334445444444499999999999996642 134567777652222 1357889999999996433 23443333
No 217
>PLN02268 probable polyamine oxidase
Probab=98.61 E-value=1.5e-06 Score=90.90 Aligned_cols=39 Identities=26% Similarity=0.500 Sum_probs=34.7
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCceE
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKVK 91 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~~ 91 (481)
.+|+|||||.|||+||+.|.+ .|++|+||| ++++|+++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~--~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHD--ASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCceee
Confidence 379999999999999999998 789999999 678886554
No 218
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.61 E-value=1.1e-07 Score=102.79 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=32.4
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.+..+|+|||||++|+++|+.|++ .|++|+|+|+.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~ 113 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKD 113 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEecc
Confidence 456899999999999999999999 79999999975
No 219
>PLN02576 protoporphyrinogen oxidase
Probab=98.55 E-value=1.2e-06 Score=93.08 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=36.2
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCC-CCcEEEEe-CCCCCCceE
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAP-KLNVVIIE-KGKPLSKVK 91 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~-g~~V~llE-~~~~g~k~~ 91 (481)
++.++||+|||||++||+||+.|++ . |.+|+|+| ++.+|+.+.
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~--~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALAS--KHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHH--hcCCCEEEEecCCCCCCcee
Confidence 3456799999999999999999999 6 89999999 557885443
No 220
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.55 E-value=9.3e-07 Score=87.02 Aligned_cols=149 Identities=17% Similarity=0.157 Sum_probs=84.4
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC--CCCceEEecCCceeeccCCCcchhHHhhccCCCChhch
Q 011610 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK--PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR 123 (481)
Q Consensus 46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~--~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~ 123 (481)
..+..+||||||||.+|.+.|+.|++ .|.+|.||||+- +-| +...+......
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~k--dGRrVhVIERDl~EPdR----------------------ivGEllQPGG~-- 94 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAK--DGRRVHVIERDLSEPDR----------------------IVGELLQPGGY-- 94 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhh--CCcEEEEEecccccchH----------------------HHHHhcCcchh--
Confidence 34467899999999999999999999 799999999862 211 11111111110
Q ss_pred hhHHhcCChHHHHHHHHh---cCCccee--ecCCeeeecC----------CChHHHHHHHHHHHH-hCCCEEEcCceEEE
Q 011610 124 GSFFSLHGPMDTMSWFSD---HGVELKT--EDDGRVFPVS----------DSSSSVIDCLLTEAK-HRGVVLQTGKVVTT 187 (481)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~---~Gi~~~~--~~~g~~~p~~----------~~a~~~~~~l~~~~~-~~Gv~i~~~~~V~~ 187 (481)
..+...+.+|..+-.+. .|..... ++....||.. .....++..|++.+. ..+|++..+ +|.+
T Consensus 95 -~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~s 172 (509)
T KOG1298|consen 95 -LALSKLGLEDCVEGIDAQRVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKS 172 (509)
T ss_pred -HHHHHhCHHHHhhcccceEeeeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHH
Confidence 01222233333222211 1111111 0011223321 123456667776654 457877544 6888
Q ss_pred EEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610 188 ASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS 224 (481)
Q Consensus 188 i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~ 224 (481)
+..++ +-..+|+.++ +.++..+..|...|+|+|.-
T Consensus 173 Llee~-gvvkGV~yk~-k~gee~~~~ApLTvVCDGcf 207 (509)
T KOG1298|consen 173 LLEEE-GVVKGVTYKN-KEGEEVEAFAPLTVVCDGCF 207 (509)
T ss_pred HHhcc-CeEEeEEEec-CCCceEEEecceEEEecchh
Confidence 87665 3334677765 44445678899999999964
No 221
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.54 E-value=7.5e-07 Score=93.36 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610 159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 223 (481)
.....+.+.|.+.+... +|+++++|++|+.++ +.+.|.+.+ ++++.||.||+|+-.
T Consensus 218 ~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~--~~~~v~~~~-----g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 218 GGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSG--DGYEIVLSN-----GGEIEADAVIVAVPH 273 (451)
T ss_pred cHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcC--CeEEEEECC-----CCEEEcCEEEECCCH
Confidence 33455666666555432 899999999998875 567777665 567999999999863
No 222
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.53 E-value=5.7e-07 Score=91.92 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610 163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 226 (481)
Q Consensus 163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~ 226 (481)
.+.-.+.-.+.++|+.+....+|.++.+++++...++++.+..++...+|+|+.||.|||--.+
T Consensus 225 Rmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsD 288 (680)
T KOG0042|consen 225 RMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSD 288 (680)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccH
Confidence 3344455566788999999999999998762334477776655666789999999999996544
No 223
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.52 E-value=8e-07 Score=93.60 Aligned_cols=41 Identities=22% Similarity=0.506 Sum_probs=34.3
Q ss_pred CCeEEEECCchHHHHHHHHHhccCC--CCcEEEEe-CCCCCCce
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAP--KLNVVIIE-KGKPLSKV 90 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~--g~~V~llE-~~~~g~k~ 90 (481)
+.||+|||||++||+||+.|++.++ |.+|+|+| ++.+|+.+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~ 45 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI 45 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence 4699999999999999999999322 89999999 56787543
No 224
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.51 E-value=3.4e-06 Score=87.21 Aligned_cols=58 Identities=19% Similarity=0.140 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610 163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS 224 (481)
Q Consensus 163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~ 224 (481)
.+.+.|.+.+++.|++++.+++|.+++.++ ++...+.+. +++...+.||.||+|+|+.
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~~---~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWTR---NHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEee---CCceEEEECCEEEEeCCCc
Confidence 455678888889999999999999998765 332233332 2223579999999999963
No 225
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.51 E-value=6.4e-06 Score=84.47 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
..+...+.+.+++.|++++++++|.++..++ +.+.|.+.+ +.++.+|.||+|+|..+. ..+++..|+..
T Consensus 183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~-----g~~i~~D~vI~a~G~~p~-~~l~~~~gl~~ 251 (377)
T PRK04965 183 PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDS-----GRSIEVDAVIAAAGLRPN-TALARRAGLAV 251 (377)
T ss_pred HHHHHHHHHHHHhCCCEEEECCeEEEEEccC--CEEEEEEcC-----CcEEECCEEEECcCCCcc-hHHHHHCCCCc
Confidence 4556677888889999999999999998654 556677665 678999999999998764 34667777664
No 226
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.50 E-value=3.7e-06 Score=89.39 Aligned_cols=64 Identities=23% Similarity=0.193 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610 159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 223 (481)
+....+.++|.+.++++|++|+++++|++|..++ +....|.+.+...++++++.||.||.++..
T Consensus 229 GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 229 GSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred CcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 4567789999999999999999999999999875 333455554311111257999999998864
No 227
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.47 E-value=2.2e-06 Score=90.42 Aligned_cols=55 Identities=27% Similarity=0.440 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610 159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG 222 (481)
Q Consensus 159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG 222 (481)
.....+.+.|.+.+.+ ++|+++++|++|+.++ +.+.|++.+ +..+.||.||+|+-
T Consensus 223 gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~--~~~~v~~~~-----g~~~~ad~VI~a~p 277 (463)
T PRK12416 223 GGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQG--DRYEISFAN-----HESIQADYVVLAAP 277 (463)
T ss_pred CCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcC--CEEEEEECC-----CCEEEeCEEEECCC
Confidence 3445677777776644 6899999999999875 567787765 56789999999884
No 228
>PTZ00367 squalene epoxidase; Provisional
Probab=98.47 E-value=7.7e-07 Score=95.45 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=32.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (481)
..+||+|||||++|+++|+.|++ .|.+|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar--~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSK--QGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHh--cCCEEEEEcccc
Confidence 46999999999999999999999 799999999754
No 229
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.46 E-value=2.5e-06 Score=88.83 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=50.1
Q ss_pred eeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610 153 RVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG 222 (481)
Q Consensus 153 ~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG 222 (481)
..||. .....+.++|.+.+...|.+++++++|.+|..++++..++|++.+ ++++.|+.||....
T Consensus 224 ~~yp~-gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~-----Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 224 FIYPL-YGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG-----GEVAKCKLVICDPS 287 (443)
T ss_pred ceeeC-CCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC-----CcEEECCEEEECcc
Confidence 35663 346678899999999999999999999999876412446788765 67899999997544
No 230
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.45 E-value=7e-06 Score=86.32 Aligned_cols=61 Identities=8% Similarity=-0.034 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCC-eEEEEEeecccCceEEEEcCeEEEccCC
Q 011610 162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGR-KFLLKVEKRTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 223 (481)
..+.+.|.+.+++.|++|+++++|++|..++ ++ ..+|++.+...++..++.||.||+|+..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 4567888888888999999999999998654 34 4467665310000117899999999864
No 231
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.45 E-value=1e-05 Score=83.63 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 162 SSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 162 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
..+.+.+.+.+++.||+++++++|+++.. + +.+.+.+.+ +.++.+|.||+|+|..+.. .+++..|+.
T Consensus 186 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~--~~~~v~l~~-----g~~i~aD~Vv~a~G~~pn~-~l~~~~gl~ 252 (396)
T PRK09754 186 PPVQRYLLQRHQQAGVRILLNNAIEHVVD-G--EKVELTLQS-----GETLQADVVIYGIGISAND-QLAREANLD 252 (396)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEEc-C--CEEEEEECC-----CCEEECCEEEECCCCChhh-HHHHhcCCC
Confidence 44556778888899999999999999975 3 445666665 5689999999999988763 466666654
No 232
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.43 E-value=3.1e-07 Score=92.62 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=81.1
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCC--ceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLS--KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~--k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (481)
.+|+|+||.||++|+.|+.|.+. ...+++.||+ +.... ..+.. +.+..... .. +++. .
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~-~~~~~~f~e~~~~f~Wh~gmll~-~~~~q~~f---------l~-------Dlvt-~ 62 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEH-GDLKALFLERRPSFSWHPGMLLP-GARMQVSF---------LK-------DLVT-L 62 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH-H---EEEEES-SS--TTGGG--S-S-B-SS-T---------TS-------SSST-T
T ss_pred ceeEEEEeeCHHHHHHHHHhhhc-CCCCEEEEecCCCCCcCCccCCC-CCcccccc---------cc-------ccCc-C
Confidence 58999999999999999999985 3689999995 34321 11111 11111111 00 0100 0
Q ss_pred HhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCC--CeEEEEEeec
Q 011610 127 FSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAG--RKFLLKVEKR 204 (481)
Q Consensus 127 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~--~~~~V~~~~~ 204 (481)
-...++..+++++.+.|-....-..+..+| ....+.+++.-.+++..-.++++++|++|...+++ ..|.|++.+
T Consensus 63 ~~P~s~~sflnYL~~~~rl~~f~~~~~~~p---~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~- 138 (341)
T PF13434_consen 63 RDPTSPFSFLNYLHEHGRLYEFYNRGYFFP---SRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD- 138 (341)
T ss_dssp T-TTSTTSHHHHHHHTT-HHHHHHH--SS----BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-
T ss_pred cCCCCcccHHHHHHHcCChhhhhhcCCCCC---CHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-
Confidence 011122345556666553222111123333 34556677776677777669999999999976511 258888854
Q ss_pred ccCceEEEEcCeEEEccCCChh
Q 011610 205 TMNLVECIEADYLLIASGSSQQ 226 (481)
Q Consensus 205 ~~~~~~~i~ad~VIlAtG~~g~ 226 (481)
.++.+..+.|+.||+|+|..+.
T Consensus 139 ~~g~~~~~~ar~vVla~G~~P~ 160 (341)
T PF13434_consen 139 SDGDGETYRARNVVLATGGQPR 160 (341)
T ss_dssp TTS-EEEEEESEEEE----EE-
T ss_pred cCCCeeEEEeCeEEECcCCCCC
Confidence 3444789999999999997654
No 233
>PLN02785 Protein HOTHEAD
Probab=98.43 E-value=9.8e-06 Score=87.51 Aligned_cols=36 Identities=33% Similarity=0.492 Sum_probs=31.7
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.....||+||||||.+|+.+|..|++ +.+|+|||++
T Consensus 51 ~~~~~yD~IIVG~G~aG~~lA~~Ls~---~~~VLllE~G 86 (587)
T PLN02785 51 GGDSAYDYIVVGGGTAGCPLAATLSQ---NFSVLLLERG 86 (587)
T ss_pred cccccCCEEEECcCHHHHHHHHHHhc---CCcEEEEecC
Confidence 34457999999999999999999998 4799999965
No 234
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.42 E-value=1.4e-06 Score=87.11 Aligned_cols=34 Identities=32% Similarity=0.595 Sum_probs=31.1
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (481)
+.+|+|||||++|+++|..|.+ .|++|+|+|+.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR--KGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH--cCCeEEEEeecc
Confidence 4689999999999999999999 899999999643
No 235
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.40 E-value=5.9e-06 Score=85.32 Aligned_cols=41 Identities=24% Similarity=0.500 Sum_probs=35.0
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceE
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVK 91 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~ 91 (481)
+.|+|||||++||+||++|++.++..+|+|+|++ +.|+.+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 3689999999999999999996555999999964 8887554
No 236
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.39 E-value=9.8e-07 Score=81.72 Aligned_cols=31 Identities=42% Similarity=0.723 Sum_probs=29.0
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
||+|||||++|++||..|++ .+.+|+|+|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~--~~~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR--PGAKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhc--CCCeEEEEecc
Confidence 79999999999999999998 89999999854
No 237
>PLN02529 lysine-specific histone demethylase 1
Probab=98.39 E-value=2e-05 Score=86.58 Aligned_cols=41 Identities=29% Similarity=0.529 Sum_probs=35.8
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCce
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKV 90 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~ 90 (481)
....||+|||||++|++||..|++ .|++|+|+| ++.+|+.+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLS--FGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHH--cCCcEEEEecCccCcCce
Confidence 356899999999999999999999 799999999 56777543
No 238
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.37 E-value=3.2e-06 Score=86.37 Aligned_cols=154 Identities=19% Similarity=0.253 Sum_probs=81.4
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCC-CcEEEEe-CCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHH
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIE-KGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFF 127 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g-~~V~llE-~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (481)
+++|+|||+|++|++.|.+|.+..+. ..|.|+| +...|..+.-+-.-.++..|... . .+ ++.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a------------~--~m--S~~ 64 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPA------------A--RM--SAF 64 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhcccc------------c--cc--ccc
Confidence 47999999999999999999874322 2399999 56777322111111122222110 0 00 000
Q ss_pred hcCChHHHHHHHHhcCCcce----eecCCeeeecCCChHHHHHHHHHHHHhCCC---EEEcCceEEEEEecCCCCeEEEE
Q 011610 128 SLHGPMDTMSWFSDHGVELK----TEDDGRVFPVSDSSSSVIDCLLTEAKHRGV---VLQTGKVVTTASSDNAGRKFLLK 200 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~Gi~~~----~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv---~i~~~~~V~~i~~~~~~~~~~V~ 200 (481)
..-.+.++.+|+...+.... ...++..||...--..++......+.+.+- -....++++++..++++..+.+.
T Consensus 65 ~pD~p~~F~~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~ 144 (474)
T COG4529 65 APDIPQDFVRWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVT 144 (474)
T ss_pred CCCCchHHHHHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEe
Confidence 01125677788877622222 123355665221112222221222222221 22345566777665313456666
Q ss_pred EeecccCceEEEEcCeEEEccCCC
Q 011610 201 VEKRTMNLVECIEADYLLIASGSS 224 (481)
Q Consensus 201 ~~~~~~~~~~~i~ad~VIlAtG~~ 224 (481)
+.+ +....||.+|+|||..
T Consensus 145 ~~~-----g~~~~ad~~Vlatgh~ 163 (474)
T COG4529 145 TAD-----GPSEIADIIVLATGHS 163 (474)
T ss_pred cCC-----CCeeeeeEEEEeccCC
Confidence 666 7788999999999964
No 239
>PLN02676 polyamine oxidase
Probab=98.37 E-value=7.2e-06 Score=86.83 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHhC------CCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610 160 SSSSVIDCLLTEAKHR------GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG 222 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~------Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG 222 (481)
....+.+.|.+.+.+. +.+|+++++|++|..++ +.+.|++.+ +.+++||+||+|..
T Consensus 222 G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~--~gV~V~~~~-----G~~~~a~~VIvtvP 283 (487)
T PLN02676 222 GYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK--NGVTVKTED-----GSVYRAKYVIVSVS 283 (487)
T ss_pred CHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC--CcEEEEECC-----CCEEEeCEEEEccC
Confidence 4556677777655332 36799999999999875 567888876 66899999999986
No 240
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=98.37 E-value=4.3e-06 Score=88.93 Aligned_cols=230 Identities=19% Similarity=0.237 Sum_probs=123.8
Q ss_pred HHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcccCCCc-----e
Q 011610 171 EAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVDPVPS-----L 245 (481)
Q Consensus 171 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~~~~p~-----l 245 (481)
..+++|++++.+.+|+.|..+. -.|.+++ +..+..|.+|+||||.+. +++-|. .
T Consensus 68 wy~~~~i~L~~~~~v~~idr~~----k~V~t~~-----g~~~~YDkLilATGS~pf------------i~PiPG~~~~~v 126 (793)
T COG1251 68 WYEENGITLYTGEKVIQIDRAN----KVVTTDA-----GRTVSYDKLIIATGSYPF------------ILPIPGSDLPGV 126 (793)
T ss_pred hHHHcCcEEEcCCeeEEeccCc----ceEEccC-----CcEeecceeEEecCcccc------------ccCCCCCCCCCe
Confidence 3467899999999999997653 3566666 789999999999998652 122222 2
Q ss_pred eEeeeCccccccccCceeccEEEEEEecCccCCCCccceecCeEEEeccccchhhcccchhhHHHhHccCceeEEEEecC
Q 011610 246 FTFKIADSQLTELSGVSFPKVVAKLKLENVQRSSPYLTQVGPMLVTHWGLSGPVILRLSAWGARYLFSSCYKGMLTVDFV 325 (481)
Q Consensus 246 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~Ge~lft~~glsG~~il~lS~~~~~~~~~~~~~~~~~~d~~ 325 (481)
+.++.-+.....+...+- . +.-+...|+++ | +- ++..|.+.+..+.+ +.++
T Consensus 127 ~~~R~i~D~~am~~~ar~----------~----~~avVIGGGLL-------G-----lE--aA~~L~~~Gm~~~V-vh~~ 177 (793)
T COG1251 127 FVYRTIDDVEAMLDCARN----------K----KKAVVIGGGLL-------G-----LE--AARGLKDLGMEVTV-VHIA 177 (793)
T ss_pred eEEecHHHHHHHHHHHhc----------c----CCcEEEccchh-------h-----hH--HHHHHHhCCCceEE-Eeec
Confidence 222222111111100000 0 00112223333 2 21 24556666666666 7788
Q ss_pred CCCCHHHHHHHHHHHHHhchhhhhhhhCCCccchhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhccCeEEEcccC
Q 011610 326 PDLHIEDMQSILSQHKIRFAKQKVLNSCPPEFCLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKHCTLEVAGKG 405 (481)
Q Consensus 326 p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~v~~~~ 405 (481)
|.+..+||+..-...... .+...... ++.++..+++.. +..+..+..++...|.. ++-+.-.|.+
T Consensus 178 ~~lMerQLD~~ag~lL~~----~le~~Gi~--~~l~~~t~ei~g------~~~~~~vr~~DG~~i~a---d~VV~a~GIr 242 (793)
T COG1251 178 PTLMERQLDRTAGRLLRR----KLEDLGIK--VLLEKNTEEIVG------EDKVEGVRFADGTEIPA---DLVVMAVGIR 242 (793)
T ss_pred chHHHHhhhhHHHHHHHH----HHHhhcce--eecccchhhhhc------CcceeeEeecCCCcccc---eeEEEecccc
Confidence 988888886543222111 11111111 111222222221 12222222222222221 3444455666
Q ss_pred CCceeEEecCCCCCCC-CCc-ccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHh
Q 011610 406 QFKDEFVTAGGVPLSE-ISL-NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIG 468 (481)
Q Consensus 406 ~~~~a~vt~GGv~~~e-i~~-~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa 468 (481)
|..+--+.+ |+.++. |-. +.| -+..|.+|++|||..+.|.+.| ...-+|-++.+++.++.
T Consensus 243 Pn~ela~~a-GlavnrGIvvnd~m-qTsdpdIYAvGEcae~~g~~yG-LVaP~yeq~~v~a~hl~ 304 (793)
T COG1251 243 PNDELAKEA-GLAVNRGIVVNDYM-QTSDPDIYAVGECAEHRGKVYG-LVAPLYEQAKVLADHLC 304 (793)
T ss_pred cccHhHHhc-CcCcCCCeeecccc-cccCCCeeehhhHHHhcCccce-ehhHHHHHHHHHHHHhc
Confidence 655544444 333333 111 344 5778999999999999999999 77888888888888874
No 241
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=8.8e-06 Score=78.93 Aligned_cols=151 Identities=18% Similarity=0.246 Sum_probs=81.7
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe--CCCCC-CceEEecCCceeeccCCCcchhHHhhccCCCChhch
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE--KGKPL-SKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFR 123 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE--~~~~g-~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~ 123 (481)
.+..||.+|||||.+||+||-+++. -|.+|.++| ++.+- .+.-+ ||.| .|..+++.+ .+.
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~--~G~kV~~lDfV~PtP~GtsWGl--GGTC--vNVGCIPKK-----------LMH 78 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAAD--LGAKVACLDFVKPTPQGTSWGL--GGTC--VNVGCIPKK-----------LMH 78 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHh--cCCcEEEEeecccCCCCCcccc--Ccee--eecccccHH-----------HHH
Confidence 3467999999999999999999999 799999999 66543 22211 5677 777776521 111
Q ss_pred hhHHhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCC-C---CeEEE
Q 011610 124 GSFFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNA-G---RKFLL 199 (481)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~---~~~~V 199 (481)
++.+- -+.+.-....|-.... +.+ ..+...+.+...+.....+--.+..-+=+.+...+. + +...+
T Consensus 79 QAall----G~al~da~kyGW~~~e---~~i---khdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I 148 (503)
T KOG4716|consen 79 QAALL----GEALHDARKYGWNVDE---QKI---KHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKI 148 (503)
T ss_pred HHHHH----HHHHHHHHhhCCCCcc---ccc---cccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceE
Confidence 11110 0111112233322221 111 134455666777766665432222211122221110 0 11233
Q ss_pred EEeecccCceEEEEcCeEEEccCCCh
Q 011610 200 KVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 200 ~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
.... +.+..+.++|+.+|+|||..+
T Consensus 149 ~at~-~~gk~~~~ta~~fvIatG~RP 173 (503)
T KOG4716|consen 149 KATN-KKGKERFLTAENFVIATGLRP 173 (503)
T ss_pred EEec-CCCceEEeecceEEEEecCCC
Confidence 3332 233457899999999999754
No 242
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.35 E-value=6.6e-06 Score=94.31 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=33.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
..+||+|||||||||+||+.|++ .|++|+|+|+. .+|
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~~G 199 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPEAG 199 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCC
Confidence 46899999999999999999999 89999999965 444
No 243
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.33 E-value=4.2e-06 Score=87.76 Aligned_cols=34 Identities=32% Similarity=0.609 Sum_probs=30.0
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (481)
+|+|||||++|+++|..|++.+++.+|+|||+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 7999999999999999999855567999999754
No 244
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=1.6e-05 Score=77.02 Aligned_cols=67 Identities=27% Similarity=0.406 Sum_probs=47.3
Q ss_pred cCCCceeEEecCCCCCCC--CCc-----ccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610 404 KGQFKDEFVTAGGVPLSE--ISL-----NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL 476 (481)
Q Consensus 404 ~~~~~~a~vt~GGv~~~e--i~~-----~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~ 476 (481)
.-+.+.|++.+=||--.. ||. .|++.|..|+|||||.+-.+. ||--+.| ||.+||.+||+.++.+.+
T Consensus 299 IPgLeNAefvRyGvmHRNtfinSP~lL~~tl~lk~~p~l~fAGQitG~E----GYveSaA--~Gllag~naa~~~~g~~~ 372 (439)
T COG1206 299 IPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAGQITGVE----GYVESAA--SGLLAGINAARLALGEEP 372 (439)
T ss_pred cCCcchhhhhhccceecccccCChhhhhHHhhcccCCCcEEeeeeecch----hhhHHhh--hhHHHhhHHHHHhcCCCC
Confidence 346677777766653322 332 678999999999999554433 4666666 999999999988766543
No 245
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.30 E-value=9.4e-06 Score=84.98 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=31.1
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (481)
.+|+|||||++|+.||..|++.+++.+|+|+|+..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 58999999999999999998865688999999764
No 246
>PLN02568 polyamine oxidase
Probab=98.28 E-value=1.7e-05 Score=84.93 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610 159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG 222 (481)
Q Consensus 159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG 222 (481)
.....+++.|.+.+. +..|+++++|+.|...+ +.+.|++.+ +.++.||+||+|+=
T Consensus 239 gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~--~~v~V~~~d-----G~~~~aD~VIvTvP 293 (539)
T PLN02568 239 KGYLSVIEALASVLP--PGTIQLGRKVTRIEWQD--EPVKLHFAD-----GSTMTADHVIVTVS 293 (539)
T ss_pred CcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeC--CeEEEEEcC-----CCEEEcCEEEEcCC
Confidence 445667777776653 34699999999999875 667888775 56799999999874
No 247
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=98.27 E-value=3.6e-06 Score=86.45 Aligned_cols=72 Identities=21% Similarity=0.247 Sum_probs=48.1
Q ss_pred cCeEEEcccCCCceeEEecCCCCCCC------CCcccccccCCCCeEEEEEEe--eccc--CcchHHHHHHHHHHHHHHH
Q 011610 396 HCTLEVAGKGQFKDEFVTAGGVPLSE------ISLNTMESKIHPRLFFAGEVL--NVDG--VTGGFNFQNAWSGGYIAGT 465 (481)
Q Consensus 396 ~~~~~v~~~~~~~~a~vt~GGv~~~e------i~~~t~esk~~~gLy~~GE~l--dv~g--~~GGynl~~A~~sG~~AG~ 465 (481)
.-|++|..+-. +.+||+.+.- +++. =+-+.+||||+|||+. .|+| ..|-..|.-....|+.++.
T Consensus 391 ~epiPv~ptvh-----y~~ggi~t~~~g~~~~~~~~-g~d~vvpGL~a~GEaac~svHGANRLgaNSLLdlvvfgraca~ 464 (642)
T KOG2403|consen 391 KEPIPVLPTVH-----YNMGGIPTNYNGEVLTIREV-GQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACAL 464 (642)
T ss_pred ccccccCCCcc-----cccCccccCCccceeeeccc-cccccccceeehhHHHHHhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 44555555533 4556655431 2222 3578999999999965 5777 4455558899999999999
Q ss_pred HHhHHhhH
Q 011610 466 SIGKLSND 473 (481)
Q Consensus 466 ~aa~~~~~ 473 (481)
+++.....
T Consensus 465 ~ia~~~~p 472 (642)
T KOG2403|consen 465 SIAEELRP 472 (642)
T ss_pred HHHHhcCC
Confidence 99876543
No 248
>PRK02106 choline dehydrogenase; Validated
Probab=98.27 E-value=2.4e-05 Score=84.58 Aligned_cols=36 Identities=31% Similarity=0.521 Sum_probs=32.4
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...||+||||+|++|+.+|..|++. +|.+|+|||++
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG 38 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAG 38 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCC
Confidence 3569999999999999999999984 68999999966
No 249
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.26 E-value=5.9e-06 Score=92.83 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=32.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
...+|+||||||||++||+.|++ .|++|+|+|+. .+|
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREENAG 575 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecccccC
Confidence 46799999999999999999999 79999999965 454
No 250
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.26 E-value=4.5e-05 Score=81.91 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=37.9
Q ss_pred HHHHHH-hCCCEEEcCceEEEEEecCCCCeEEEEEeecccCc-eEEEEcCeEEEccCCC
Q 011610 168 LLTEAK-HRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNL-VECIEADYLLIASGSS 224 (481)
Q Consensus 168 l~~~~~-~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~-~~~i~ad~VIlAtG~~ 224 (481)
++..+. +.|++|+.++.|.+|..++ +...+|++.+ .+. ...+.++.||+|+|+-
T Consensus 199 ~l~~a~~r~nl~i~~~~~V~rI~~~~-~ra~GV~~~~--~~~~~~~~~ak~VIlaAGai 254 (532)
T TIGR01810 199 YLHPAMKRPNLEVQTRAFVTKINFEG-NRATGVEFKK--GGRKEHTEANKEVILSAGAI 254 (532)
T ss_pred HhhhhccCCCeEEEeCCEEEEEEecC-CeEEEEEEEe--CCcEEEEEEeeeEEEccCCC
Confidence 333343 5679999999999999875 4456777653 111 2346889999999973
No 251
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.23 E-value=4.6e-06 Score=94.49 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=33.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
...+|+|||||||||+||+.|++ .|++|+|+|+. .+|
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~~~G 342 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFHDLG 342 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCCCC
Confidence 46899999999999999999999 79999999965 555
No 252
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.23 E-value=4.1e-06 Score=85.66 Aligned_cols=33 Identities=36% Similarity=0.625 Sum_probs=29.4
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
||+|||||+||+++|+.|++..+|++|+|+|+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~ 33 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAG 33 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 899999999999999999973249999999965
No 253
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.23 E-value=1.7e-05 Score=76.34 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCC--eEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGR--KFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~--~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
+...+...+.+..+..|-.++++-++.++.... +. .+-+.+.+ +.+++++++.||-|+|-.. ..++...|..
T Consensus 194 D~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~-~~~~~Ypivv~n---gk~ee~r~~~~vtc~gl~s--dr~aa~sgc~ 267 (453)
T KOG2665|consen 194 DWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNK-EATFSYPIVVLN---GKGEEKRTKNVVTCAGLQS--DRCAALSGCE 267 (453)
T ss_pred ehHHHHHHHHHHHHHhcccccccceeccchhcc-CCCCCCceEEec---CccceeEEeEEEEeccccH--hHHHHHhCCC
Confidence 345666677777889999999999999998764 22 23333332 2367899999999999655 3566667765
Q ss_pred cccCCCceeEeeeC
Q 011610 238 IVDPVPSLFTFKIA 251 (481)
Q Consensus 238 i~~~~p~l~~~~~~ 251 (481)
+.|..++++-.
T Consensus 268 ---~dPriVpfrG~ 278 (453)
T KOG2665|consen 268 ---LDPRIVPFRGE 278 (453)
T ss_pred ---CCCeeeeccch
Confidence 34566666543
No 254
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.22 E-value=2.9e-06 Score=77.11 Aligned_cols=144 Identities=22% Similarity=0.282 Sum_probs=86.1
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (481)
+.||+|||+|.+||+|||..++++++++|.|||.. .+| ||.+ . .. +++ ....
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG-------GGaW--L--GG----QLF-----------SAMv- 128 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG-------GGAW--L--GG----QLF-----------SAMV- 128 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC-------Cccc--c--cc----hhh-----------hhhh-
Confidence 46999999999999999999977799999999965 565 2322 1 10 011 1111
Q ss_pred cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHH-HHHHHHHhCCCEEEcCceEEEEEecCCC-C--e-------E
Q 011610 129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVID-CLLTEAKHRGVVLQTGKVVTTASSDNAG-R--K-------F 197 (481)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~-~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-~--~-------~ 197 (481)
...+ ..-|+.+.|+++..+.+ ++.- ..+.-+.. .+.+.+...+|+++.-+.|.++...+.+ + + |
T Consensus 129 vRKP--AhLFL~EigvpYedegd-YVVV--KHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNW 203 (328)
T KOG2960|consen 129 VRKP--AHLFLQEIGVPYEDEGD-YVVV--KHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNW 203 (328)
T ss_pred hcCh--HHHHHHHhCCCcccCCC-EEEE--eeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeee
Confidence 1111 12367788998876543 3321 23333333 3445556678999888888887655311 1 1 3
Q ss_pred EEEEeecc---cCceEEEEcCeEEEccCCCh
Q 011610 198 LLKVEKRT---MNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 198 ~V~~~~~~---~~~~~~i~ad~VIlAtG~~g 225 (481)
.+.+.+.. .-....+++..||-+||.+|
T Consensus 204 tLV~qnHgtQsCMDPNviea~~vvS~tGHDG 234 (328)
T KOG2960|consen 204 TLVTQNHGTQSCMDPNVIEAAVVVSTTGHDG 234 (328)
T ss_pred EEeeeccCccccCCCCeeeEEEEEEccCCCC
Confidence 33332200 00124689999999999764
No 255
>PRK12831 putative oxidoreductase; Provisional
Probab=98.21 E-value=2.9e-06 Score=89.34 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=33.5
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
...+||+||||||+|++||+.|++ .|++|+|+|+. .+|
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~~~G 176 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALHEPG 176 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCC
Confidence 356899999999999999999999 79999999965 454
No 256
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.21 E-value=1.6e-05 Score=77.49 Aligned_cols=50 Identities=30% Similarity=0.413 Sum_probs=41.6
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcc
Q 011610 46 HTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCAD 107 (481)
Q Consensus 46 ~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~ 107 (481)
.....||.+|||||..|+.+|..+++ .|.+|.|+|.. .+| |.| .|..|.+
T Consensus 16 ~~~k~fDylvIGgGSGGvasARrAa~--~GAkv~l~E~~f~lG--------GTC--Vn~GCVP 66 (478)
T KOG0405|consen 16 ADVKDFDYLVIGGGSGGVASARRAAS--HGAKVALCELPFGLG--------GTC--VNVGCVP 66 (478)
T ss_pred ccccccceEEEcCCcchhHHhHHHHh--cCceEEEEecCCCcC--------ceE--Eeecccc
Confidence 44468999999999999999999999 79999999965 666 777 5555554
No 257
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.19 E-value=9.1e-05 Score=77.80 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=33.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLS 88 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~ 88 (481)
..+||+|||||++|+++|..|++ .|++|+|+|+. .+|+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~~~GG 170 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAK--AGHSVTVFEALHKPGG 170 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCc
Confidence 46899999999999999999999 79999999964 4553
No 258
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.18 E-value=4e-05 Score=84.66 Aligned_cols=41 Identities=29% Similarity=0.463 Sum_probs=35.6
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCc
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSK 89 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k 89 (481)
.....+|+|||||++|++||+.|++ .|++|+|+| +..+|++
T Consensus 235 ~~~~~~v~IiGaG~aGl~aA~~L~~--~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 235 GVEPANVVVVGAGLAGLVAARQLLS--MGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeccccCCCc
Confidence 3456899999999999999999999 799999999 5577754
No 259
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.15 E-value=8.8e-06 Score=91.81 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=32.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
..+||+||||||||++||+.|++ .|++|+|+|+. .+|
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKEKPG 573 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCeEEEEecccccC
Confidence 45899999999999999999999 79999999965 444
No 260
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.12 E-value=1.4e-05 Score=82.06 Aligned_cols=86 Identities=21% Similarity=0.236 Sum_probs=61.5
Q ss_pred CeeeecC--CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHH
Q 011610 152 GRVFPVS--DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHR 229 (481)
Q Consensus 152 g~~~p~~--~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~ 229 (481)
+.++|.+ .++..++..|.+.+++ |++++++++|++|+.++ +.+.|++.+ +..+.||+||+|+|.+.. .
T Consensus 123 al~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~~~v~t~~-----g~~~~a~~vV~a~G~~~~--~ 192 (381)
T TIGR03197 123 GLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG--EGWQLLDAN-----GEVIAASVVVLANGAQAG--Q 192 (381)
T ss_pred ceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--CeEEEEeCC-----CCEEEcCEEEEcCCcccc--c
Confidence 4455543 2678899999999998 99999999999998764 568888775 556899999999998763 2
Q ss_pred HHHHcCCCcccCCCceeE
Q 011610 230 LAAQLGHSIVDPVPSLFT 247 (481)
Q Consensus 230 la~~~G~~i~~~~p~l~~ 247 (481)
+.+...+.+.|.+..++.
T Consensus 193 l~~~~~~pi~p~rg~~~~ 210 (381)
T TIGR03197 193 LAQTAHLPLRPVRGQVSH 210 (381)
T ss_pred ccccccCCccccccceee
Confidence 333334444444433333
No 261
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.11 E-value=5.1e-05 Score=83.48 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=32.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
...+|+||||||+|++||..|++ .|++|+|+|+. .+|
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~G 363 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIG 363 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCC
Confidence 45799999999999999999999 79999999965 555
No 262
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.11 E-value=2.1e-05 Score=76.80 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=32.7
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCC
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLS 88 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~ 88 (481)
....+|+|||+|++||+||+.|++ ..+|+|+|. +..|+
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~---rhdVTLfEA~~rlGG 44 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSR---RHDVTLFEADRRLGG 44 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhc---ccceEEEeccccccC
Confidence 356899999999999999999998 469999995 46764
No 263
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.10 E-value=3.9e-06 Score=63.73 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=27.2
Q ss_pred EECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 55 VVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 55 IIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
|||||++||++|+.|++ .|.+|+|+|+. .+|
T Consensus 1 IiGaG~sGl~aA~~L~~--~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK--AGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHH--TTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHH--CCCcEEEEecCcccC
Confidence 89999999999999999 68999999955 666
No 264
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.09 E-value=4.3e-06 Score=88.09 Aligned_cols=43 Identities=19% Similarity=0.419 Sum_probs=38.3
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCceE
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKVK 91 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~~ 91 (481)
.....+|||||||+|||+||.+|.+ .|.+|+|+| |+++|+++.
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~--~G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQD--FGFDVLVLEARDRVGGRIY 55 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHH--cCCceEEEeccCCcCceeE
Confidence 3456899999999999999999999 799999999 889997654
No 265
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.08 E-value=0.00016 Score=76.44 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=32.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
..++|+|||||++|+++|..|++ .|++|+|+|+. .+|
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~~~G 179 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERADRIG 179 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCC
Confidence 45799999999999999999999 79999999964 555
No 266
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.07 E-value=8.6e-05 Score=79.04 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=31.4
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
|||+|||+||+|+++|..|++ .|++|++||++ ..+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~--~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD--AGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH--CCCeEEEEeccCccC
Confidence 699999999999999999999 78999999954 444
No 267
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.05 E-value=9.5e-06 Score=92.75 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=32.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
...+|+|||||||||+||+.|++ .|++|+|+|+. .+|
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALHVVG 466 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCc
Confidence 45799999999999999999999 79999999965 444
No 268
>PLN03000 amine oxidase
Probab=98.04 E-value=8.5e-05 Score=82.31 Aligned_cols=39 Identities=26% Similarity=0.459 Sum_probs=34.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCc
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSK 89 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k 89 (481)
...+|+|||||++|+.+|..|++ .|++|+|+| ++.+|+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~--~G~~V~VlE~~~riGGR 222 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMR--FGFKVTVLEGRKRPGGR 222 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHH--CCCcEEEEEccCcCCCC
Confidence 46899999999999999999999 789999999 5677753
No 269
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.04 E-value=7.5e-05 Score=72.52 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610 163 SVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS 224 (481)
Q Consensus 163 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~ 224 (481)
.+-+.|....++.|..++.+.+|.+....+ +....|.+.+ .....++||..|+|+|+-
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~~v~~i~trn---~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG-GRVTEIYTRN---HADIPLRADFYVLASGSF 316 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC-CeEEEEEecc---cccCCCChhHeeeecccc
Confidence 445567888889999999999999998875 3434566653 223578999999999963
No 270
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.03 E-value=9.4e-05 Score=79.37 Aligned_cols=36 Identities=36% Similarity=0.485 Sum_probs=32.8
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...++|+||||+|.+|+.+|..|+. ++.+|+|||++
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG 39 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAG 39 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcC--CCCeEEEEeCC
Confidence 3467999999999999999999997 89999999965
No 271
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.02 E-value=6.7e-05 Score=80.29 Aligned_cols=81 Identities=26% Similarity=0.269 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCcc
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIV 239 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~ 239 (481)
++..+...+...+.++|++|+++++|+++..++ +..+.|++.+..++....+.|+.||+|+|.|.+ .+++.+|.++
T Consensus 126 dp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~--~l~~~~g~~~- 201 (516)
T TIGR03377 126 DPFRLVAANVLDAQEHGARIFTYTKVTGLIREG-GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG--RIAEYAGLDI- 201 (516)
T ss_pred CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH--HHHHhcCCCC-
Confidence 467788889999999999999999999998765 344566664322233457999999999999874 5777777643
Q ss_pred cCCCc
Q 011610 240 DPVPS 244 (481)
Q Consensus 240 ~~~p~ 244 (481)
++.|.
T Consensus 202 ~i~p~ 206 (516)
T TIGR03377 202 RMFPA 206 (516)
T ss_pred ceecc
Confidence 44444
No 272
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.99 E-value=1.8e-05 Score=88.43 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=32.9
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
..+||+||||||||++||..|++ .|++|+|+|+. .+|
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~~~G 467 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALHEIG 467 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCC
Confidence 46799999999999999999999 79999999964 444
No 273
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.97 E-value=7.4e-05 Score=75.33 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=49.8
Q ss_pred eeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccC
Q 011610 154 VFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASG 222 (481)
Q Consensus 154 ~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG 222 (481)
-||. +....+..++.+.+++.|.+|.++.+|.+|..++ +...+|++.+ |.+++++.||--++
T Consensus 257 ~Yp~-GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L~d-----G~ev~sk~VvSNAt 318 (561)
T KOG4254|consen 257 GYPR-GGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRLAD-----GTEVRSKIVVSNAT 318 (561)
T ss_pred cCCC-CChhHHHHHHHHHHHhccceeeehhhhhheeccC-CeEEEEEecC-----CcEEEeeeeecCCc
Confidence 3443 3355778889999999999999999999999887 6678999998 88999977665444
No 274
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.96 E-value=6.7e-05 Score=78.21 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=40.6
Q ss_pred CCCCCCCCCcccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHh
Q 011610 415 GGVPLSEISLNTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDA 474 (481)
Q Consensus 415 GGv~~~ei~~~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~ 474 (481)
|+|.++ .+|+.+.+||+|++|++.++......-..+.|..+|..|++++......+
T Consensus 295 G~I~Vd----~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 295 GRISVD----DHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred CcEEeC----CCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 455543 35788889999999988876543222356789999999999998766443
No 275
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.94 E-value=0.00017 Score=56.49 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=28.5
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.|+|||||+.|+-.|..|++ .|.+|+|+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHH--hCcEEEEEecc
Confidence 48999999999999999999 78999999965
No 276
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.93 E-value=2.7e-05 Score=82.04 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=33.0
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
...++|+|||||++|+++|..|++ .|++|+|+|+. .+|
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~~~g 176 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDKAG 176 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCC
Confidence 345799999999999999999999 78999999965 444
No 277
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.87 E-value=8.4e-05 Score=75.67 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=35.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCceE
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKVK 91 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~~ 91 (481)
...+|+|||||.||++||.+|.++ ...+|+|+| .+++|+.+.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~-gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLEN-GFIDVLILEASDRIGGRIH 62 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHh-CCceEEEEEeccccCceEe
Confidence 446999999999999999999974 467899999 678986544
No 278
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.87 E-value=0.0005 Score=72.83 Aligned_cols=37 Identities=38% Similarity=0.548 Sum_probs=33.3
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
....||.||||||.||+..|..|++. +..+|+|||++
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaG 90 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAG 90 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecC
Confidence 45689999999999999999999995 67999999965
No 279
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.84 E-value=0.00048 Score=75.64 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=32.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
...+|+|||+|++|+++|..|++ .|++|+|+|+. .+|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIG 346 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCC
Confidence 46899999999999999999999 78999999965 444
No 280
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.84 E-value=0.00021 Score=75.26 Aligned_cols=99 Identities=24% Similarity=0.338 Sum_probs=70.5
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||++|+-+|..+++ .|.+|+|+|+.. +. .. . .
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l--------------~~--~------------~---------- 210 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFAS--LGSKVTVIEMLDRIL--------------PG--E------------D---------- 210 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCCCC--------------CC--C------------C----------
Confidence 589999999999999999998 689999999642 11 00 0 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
..+.+.+.+.+++.|++++++++|.+++.++ +.+.+.+.+ +..
T Consensus 211 --------------------------------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~---g~~ 253 (461)
T TIGR01350 211 --------------------------------AEVSKVVAKALKKKGVKILTNTKVTAVEKND--DQVVYENKG---GET 253 (461)
T ss_pred --------------------------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEeC---CcE
Confidence 0111223345667899999999999998654 455565543 112
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 254 ~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 254 ETLTGEKVLVAVGRKPN 270 (461)
T ss_pred EEEEeCEEEEecCCccc
Confidence 57999999999998664
No 281
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.79 E-value=0.00026 Score=74.66 Aligned_cols=100 Identities=28% Similarity=0.364 Sum_probs=70.5
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||+.|+-+|..+++ .|.+|+++|+.. +. .. . .
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------------~~--~------------~---------- 212 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYAS--LGAEVTIVEALPRIL--------------PG--E------------D---------- 212 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCcC--------------Cc--C------------C----------
Confidence 579999999999999999988 688999999642 11 00 0 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
.++.+.+.+.+++.|++++++++|.+++.++ +.+.+.+.+ .+..
T Consensus 213 --------------------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~--gg~~ 256 (462)
T PRK06416 213 --------------------------------KEISKLAERALKKRGIKIKTGAKAKKVEQTD--DGVTVTLED--GGKE 256 (462)
T ss_pred --------------------------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEEe--CCee
Confidence 0111233445667899999999999998754 456666543 1112
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 257 ~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 257 ETLEADYVLVAVGRRPN 273 (462)
T ss_pred EEEEeCEEEEeeCCccC
Confidence 67999999999997664
No 282
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.75 E-value=9.1e-05 Score=78.18 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=32.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
...+|+|||||++|+++|..|++ .|++|+|+|+. .+|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~~~g 177 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHPEIG 177 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCC
Confidence 45799999999999999999999 78999999965 454
No 283
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.74 E-value=0.00027 Score=74.51 Aligned_cols=97 Identities=22% Similarity=0.306 Sum_probs=71.0
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||+.|+-.|..+++ .|.+|+|+|+.. +. .. .+
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------------~~--~d---------------------- 215 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAA--LGVKVTLINTRDRLL--------------SF--LD---------------------- 215 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcC--------------Cc--CC----------------------
Confidence 579999999999999999998 789999999542 21 00 00
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
.++.+.+.+.+++.|++++++++|+++..++ +.+.+++.+ +
T Consensus 216 --------------------------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~-----g 256 (461)
T PRK05249 216 --------------------------------DEISDALSYHLRDSGVTIRHNEEVEKVEGGD--DGVIVHLKS-----G 256 (461)
T ss_pred --------------------------------HHHHHHHHHHHHHcCCEEEECCEEEEEEEeC--CeEEEEECC-----C
Confidence 0112234445667799999999999998654 456666554 4
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 257 ~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 257 KKIKADCLLYANGRTGN 273 (461)
T ss_pred CEEEeCEEEEeecCCcc
Confidence 57999999999997654
No 284
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.73 E-value=0.00014 Score=73.88 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=32.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
...+|+|||||++|+.+|..|++ .|.+|+++|+. .++
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~g 54 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLPEPG 54 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCC
Confidence 34699999999999999999998 78999999965 444
No 285
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.73 E-value=0.00047 Score=69.12 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 226 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~ 226 (481)
++..++..|.+.+++.|++++.+++|+++..++ +..+.|.+.+ + .+.||.||+|+|++..
T Consensus 135 ~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~-~~~~~v~~~~-----g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 135 DPRALLKALEKALEKLGVEIIEHTEVQHIEIRG-EKVTAIVTPS-----G-DVQADQVVLAAGAWAG 194 (337)
T ss_pred ChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC-CEEEEEEcCC-----C-EEECCEEEEcCChhhh
Confidence 568889999999999999999999999998765 3344677664 3 7999999999998653
No 286
>PRK06370 mercuric reductase; Validated
Probab=97.72 E-value=0.00042 Score=73.14 Aligned_cols=100 Identities=21% Similarity=0.265 Sum_probs=69.7
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||+.|+-+|..+++ .|.+|+|+|+.. +.. . .+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l~-------------~---~~---------------------- 211 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRR--FGSEVTVIERGPRLLP-------------R---ED---------------------- 211 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCCCc-------------c---cC----------------------
Confidence 589999999999999999998 688999999542 210 0 00
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
.++.+.+.+.+++.|++++++++|.++..++ +...|.+.. .+++
T Consensus 212 --------------------------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~--~~~~ 255 (463)
T PRK06370 212 --------------------------------EDVAAAVREILEREGIDVRLNAECIRVERDG--DGIAVGLDC--NGGA 255 (463)
T ss_pred --------------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEEe--CCCc
Confidence 0011223345567899999999999998654 444444431 1124
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 256 ~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 256 PEITGSHILVAVGRVPN 272 (463)
T ss_pred eEEEeCEEEECcCCCcC
Confidence 57999999999997664
No 287
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.71 E-value=0.00049 Score=72.05 Aligned_cols=96 Identities=22% Similarity=0.244 Sum_probs=68.7
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||+.|+-+|..+++ .|.+|+|+|+.. +.. . . ..
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l~-------------~---~------------~~--------- 198 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNK--LGSKVTVLDAASTILP-------------R---E------------EP--------- 198 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCccCC-------------C---C------------CH---------
Confidence 479999999999999999998 789999999642 210 0 0 00
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
+ +.+.+.+.+++.|++++++++|+++..++ +.+.+..+ +
T Consensus 199 ----~-----------------------------~~~~~~~~l~~~GI~i~~~~~V~~i~~~~--~~v~v~~~------g 237 (438)
T PRK07251 199 ----S-----------------------------VAALAKQYMEEDGITFLLNAHTTEVKNDG--DQVLVVTE------D 237 (438)
T ss_pred ----H-----------------------------HHHHHHHHHHHcCCEEEcCCEEEEEEecC--CEEEEEEC------C
Confidence 0 01122344567799999999999998653 44545443 4
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 238 ~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 238 ETYRFDALLYATGRKPN 254 (438)
T ss_pred eEEEcCEEEEeeCCCCC
Confidence 67999999999997664
No 288
>PRK06116 glutathione reductase; Validated
Probab=97.70 E-value=0.00049 Score=72.35 Aligned_cols=98 Identities=22% Similarity=0.314 Sum_probs=71.2
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||+|+.|+-.|..+++ .|.+|+++++.. +. ..
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l-------------~~--------------------------- 205 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNG--LGSETHLFVRGDAPL-------------RG--------------------------- 205 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCc-------------cc---------------------------
Confidence 579999999999999999988 688999998542 11 00
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
++ .++.+.+.+.+++.|++++++++|.+++.++ ++.+.|.+.+ +
T Consensus 206 ~~------------------------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~-~g~~~v~~~~-----g 249 (450)
T PRK06116 206 FD------------------------------PDIRETLVEEMEKKGIRLHTNAVPKAVEKNA-DGSLTLTLED-----G 249 (450)
T ss_pred cC------------------------------HHHHHHHHHHHHHCCcEEECCCEEEEEEEcC-CceEEEEEcC-----C
Confidence 00 0112334455667899999999999998754 3436666654 5
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 250 ~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 250 ETLTVDCLIWAIGREPN 266 (450)
T ss_pred cEEEeCEEEEeeCCCcC
Confidence 67999999999997653
No 289
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.68 E-value=4.7e-05 Score=77.57 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=32.1
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPL 87 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g 87 (481)
++||+|||||++|+++|..|++ .|.+|+|||+ +.+|
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~--~G~~V~viEk~~~iG 37 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQ--LNKRVLVVEKRNHIG 37 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCC
Confidence 3799999999999999999998 6899999995 4566
No 290
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.66 E-value=0.00015 Score=76.92 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=32.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
...+|+|||||++|+.+|..|++ .|++|+|+|+. .+|
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~~~g 179 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCG 179 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCCC
Confidence 34799999999999999999999 78999999965 444
No 291
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.65 E-value=0.00012 Score=69.86 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=30.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCC------CcEEEEeCCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPK------LNVVIIEKGKP 86 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g------~~V~llE~~~~ 86 (481)
....|+|||||+.|.++||.|++ .+ ..|+|+|+..+
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~--~~sf~~~~~~ItifEs~~I 50 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTE--HPSFKKGELDITIFESKEI 50 (380)
T ss_pred CceEEEEECCCceeeeeehhhhc--CCccCCCceeEEEEeeccc
Confidence 44899999999999999999998 34 77999995544
No 292
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.64 E-value=0.00057 Score=68.99 Aligned_cols=145 Identities=17% Similarity=0.259 Sum_probs=73.1
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhH
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSF 126 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (481)
......|+|||||-++.-.+..|.+.++..+|.++=|...-... .-..+.| .+. .+.+.. .
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~-----d~s~f~n-----------e~f--~P~~v~-~ 247 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPM-----DDSPFVN-----------EIF--SPEYVD-Y 247 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB---------CCHH-----------GGG--SHHHHH-H
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCC-----ccccchh-----------hhc--Cchhhh-h
Confidence 34567999999999999999999985444578877764311000 0011111 111 122221 2
Q ss_pred HhcCChHHHHHHHHhcC-CcceeecCCeeeecCCChHHHHHHHHH-----HH-HhCCCEEEcCceEEEEEecCCCCeEEE
Q 011610 127 FSLHGPMDTMSWFSDHG-VELKTEDDGRVFPVSDSSSSVIDCLLT-----EA-KHRGVVLQTGKVVTTASSDNAGRKFLL 199 (481)
Q Consensus 127 l~~~~~~~~~~~~~~~G-i~~~~~~~g~~~p~~~~a~~~~~~l~~-----~~-~~~Gv~i~~~~~V~~i~~~~~~~~~~V 199 (481)
+...+.+.-.+++.+.. ... +-+ ..++++.+.+ .+ .+..++++.+++|++++..+ ++.+.+
T Consensus 248 f~~l~~~~R~~~l~~~~~~ny-----~~i------~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~-~~~~~l 315 (341)
T PF13434_consen 248 FYSLPDEERRELLREQRHTNY-----GGI------DPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDG-DGGVRL 315 (341)
T ss_dssp HHTS-HHHHHHHHHHTGGGTS-----SEB-------HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEE
T ss_pred hhcCCHHHHHHHHHHhHhhcC-----CCC------CHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECC-CCEEEE
Confidence 23333333333333321 000 111 1233333222 22 23358999999999999876 458888
Q ss_pred EEeecccCceEEEEcCeEEEccC
Q 011610 200 KVEKRTMNLVECIEADYLLIASG 222 (481)
Q Consensus 200 ~~~~~~~~~~~~i~ad~VIlAtG 222 (481)
.+.+...+...++.+|.||+|||
T Consensus 316 ~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 316 TLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp EEEETTT--EEEEEESEEEE---
T ss_pred EEEECCCCCeEEEecCEEEEcCC
Confidence 88765555667899999999999
No 293
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=6.2e-05 Score=77.81 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=35.1
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCceE
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKVK 91 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~~ 91 (481)
++|+|+|||.|||+||+.|++ +|++|+|+| ++.+|+|..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~--~g~~vt~~ea~~~~GGk~~ 40 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELAD--AGYDVTLYEARDRLGGKVA 40 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHh--CCCceEEEeccCccCceee
Confidence 479999999999999999999 899999999 668887654
No 294
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.63 E-value=0.00089 Score=70.17 Aligned_cols=108 Identities=21% Similarity=0.284 Sum_probs=75.6
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||+.|+-+|..+++ .|.+|+++++.. +. .. .
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l-------------~~--------------------------~ 188 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKH--LGKNVRIIQLEDRIL-------------PD--------------------------S 188 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHh--cCCcEEEEeCCcccC-------------ch--------------------------h
Confidence 579999999999999999988 688899988532 11 00 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
++ ..+.+.+.+.+++.|++++++++|.++..+ ++...+.++ +
T Consensus 189 ~~------------------------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~--~~~~~v~~~------~ 230 (444)
T PRK09564 189 FD------------------------------KEITDVMEEELRENGVELHLNEFVKSLIGE--DKVEGVVTD------K 230 (444)
T ss_pred cC------------------------------HHHHHHHHHHHHHCCCEEEcCCEEEEEecC--CcEEEEEeC------C
Confidence 00 112334455667789999999999999643 244455554 3
Q ss_pred EEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 210 ECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
.++.+|.||+|+|..+. ..+++..|+++
T Consensus 231 ~~i~~d~vi~a~G~~p~-~~~l~~~gl~~ 258 (444)
T PRK09564 231 GEYEADVVIVATGVKPN-TEFLEDTGLKT 258 (444)
T ss_pred CEEEcCEEEECcCCCcC-HHHHHhcCccc
Confidence 47999999999998764 34567777654
No 295
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.63 E-value=0.00044 Score=72.59 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=69.4
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
.+|+|||+|..|+-.|..+++ .|.+|+++|+.... . + .+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~-------------l-----~---------------------~~ 205 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRG--LGVQVTLIYRGELI-------------L-----R---------------------GF 205 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHH--cCCeEEEEEeCCCC-------------C-----c---------------------cc
Confidence 469999999999999999988 68899999853210 0 0 00
Q ss_pred ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE 210 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~ 210 (481)
+ .++...+.+.+++.|++++.+++|.++..++ +.+.|.+.+ +.
T Consensus 206 d------------------------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~-----g~ 248 (446)
T TIGR01424 206 D------------------------------DDMRALLARNMEGRGIRIHPQTSLTSITKTD--DGLKVTLSH-----GE 248 (446)
T ss_pred C------------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeEEEEEcC-----Cc
Confidence 0 0112233345567899999999999998654 445666554 56
Q ss_pred EEEcCeEEEccCCChh
Q 011610 211 CIEADYLLIASGSSQQ 226 (481)
Q Consensus 211 ~i~ad~VIlAtG~~g~ 226 (481)
.+.+|.||+|+|..+.
T Consensus 249 ~i~~D~viva~G~~pn 264 (446)
T TIGR01424 249 EIVADVVLFATGRSPN 264 (446)
T ss_pred EeecCEEEEeeCCCcC
Confidence 7999999999997653
No 296
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.61 E-value=0.0024 Score=69.12 Aligned_cols=37 Identities=32% Similarity=0.453 Sum_probs=32.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
...+|+|||+||+|+++|..|++ .|++|+|+|+. .+|
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~~~G 173 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGPKLG 173 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCC
Confidence 45799999999999999999999 68999999954 554
No 297
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.60 E-value=0.00071 Score=71.46 Aligned_cols=101 Identities=28% Similarity=0.326 Sum_probs=68.5
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||..|+-+|..+++ .|.+|+|+|+. .+. .. . .
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~~~~l-------------~~---~------------d---------- 212 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKN--YGVDVTIVEFLDRAL-------------PN---E------------D---------- 212 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCcC-------------Cc---c------------C----------
Confidence 479999999999999999988 68889999843 211 00 0 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
.++.+.+.+.+++.||+++++++|+++..++ +.+.+.+.. .++..
T Consensus 213 --------------------------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~-~~g~~ 257 (466)
T PRK07818 213 --------------------------------AEVSKEIAKQYKKLGVKILTGTKVESIDDNG--SKVTVTVSK-KDGKA 257 (466)
T ss_pred --------------------------------HHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CeEEEEEEe-cCCCe
Confidence 0111223345567899999999999997653 445555431 11222
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 258 ~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 258 QELEADKVLQAIGFAPR 274 (466)
T ss_pred EEEEeCEEEECcCcccC
Confidence 57999999999997654
No 298
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.56 E-value=0.0011 Score=70.10 Aligned_cols=100 Identities=23% Similarity=0.308 Sum_probs=68.0
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||++|+-+|..|++ .|.+|+|+|+.. +. .. . .
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~--~g~~Vtli~~~~~il-------------~~---~------------~---------- 220 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLAD--FGVEVTVVEAADRIL-------------PT---E------------D---------- 220 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCeEEEEEecCccC-------------Cc---C------------C----------
Confidence 589999999999999999998 689999999542 11 00 0 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEec-CCCCeEEEEEeecccCc
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSD-NAGRKFLLKVEKRTMNL 208 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~~~~~V~~~~~~~~~ 208 (481)
..+.+.+.+.+++.|++++++++|.++... + ++...+.+.+ +.
T Consensus 221 --------------------------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~~~~~~~---g~ 264 (472)
T PRK05976 221 --------------------------------AELSKEVARLLKKLGVRVVTGAKVLGLTLKKD-GGVLIVAEHN---GE 264 (472)
T ss_pred --------------------------------HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecC-CCEEEEEEeC---Cc
Confidence 011122334456779999999999999752 2 2333333332 22
Q ss_pred eEEEEcCeEEEccCCChh
Q 011610 209 VECIEADYLLIASGSSQQ 226 (481)
Q Consensus 209 ~~~i~ad~VIlAtG~~g~ 226 (481)
..++.+|.||+|+|..+.
T Consensus 265 ~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 265 EKTLEADKVLVSVGRRPN 282 (472)
T ss_pred eEEEEeCEEEEeeCCccC
Confidence 257999999999997653
No 299
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.55 E-value=0.0014 Score=69.18 Aligned_cols=102 Identities=25% Similarity=0.324 Sum_probs=69.4
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||+.|+-.|..+++ .|.+|+|+|+.. +. .. .+
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~--~G~~Vtlie~~~~il--------------~~--~d---------------------- 214 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRR--LGAQVTVVEYLDRIC--------------PG--TD---------------------- 214 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCCCC--------------CC--CC----------------------
Confidence 579999999999999999988 688999999532 21 00 00
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
.++.+.+.+.+++.||++++++.|.+++.++ +.+.+.+.....+.+
T Consensus 215 --------------------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~~~g~~ 260 (466)
T PRK06115 215 --------------------------------TETAKTLQKALTKQGMKFKLGSKVTGATAGA--DGVSLTLEPAAGGAA 260 (466)
T ss_pred --------------------------------HHHHHHHHHHHHhcCCEEEECcEEEEEEEcC--CeEEEEEEEcCCCce
Confidence 0011223345566799999999999998653 445444432111224
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
..+.+|.||+|+|..+.
T Consensus 261 ~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 261 ETLQADYVLVAIGRRPY 277 (466)
T ss_pred eEEEeCEEEEccCCccc
Confidence 67999999999997653
No 300
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.54 E-value=0.0013 Score=68.58 Aligned_cols=107 Identities=23% Similarity=0.341 Sum_probs=74.6
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||++|+-+|..|++ .|.+|+++++.. +. . . .
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~~--------------~----~---------------------~ 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRE--RGKNVTLIHRSERIL--------------N----K---------------------L 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECCcccC--------------c----c---------------------c
Confidence 589999999999999999998 688999998542 11 0 0 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
++ ..+.+.+.+.+++.||+++++++|.++..++ . + +.+.+ +
T Consensus 177 ~~------------------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~--~-~-v~~~~-----g 217 (427)
T TIGR03385 177 FD------------------------------EEMNQIVEEELKKHEINLRLNEEVDSIEGEE--R-V-KVFTS-----G 217 (427)
T ss_pred cC------------------------------HHHHHHHHHHHHHcCCEEEeCCEEEEEecCC--C-E-EEEcC-----C
Confidence 00 1112334445667899999999999997542 3 3 34443 5
Q ss_pred EEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 210 ECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
.++.+|.||+|+|..+.. .+++.+|+.+
T Consensus 218 ~~i~~D~vi~a~G~~p~~-~~l~~~gl~~ 245 (427)
T TIGR03385 218 GVYQADMVILATGIKPNS-ELAKDSGLKL 245 (427)
T ss_pred CEEEeCEEEECCCccCCH-HHHHhcCccc
Confidence 679999999999987653 4566677654
No 301
>PRK14727 putative mercuric reductase; Provisional
Probab=97.54 E-value=0.00084 Score=71.17 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=68.8
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
.+|+|||+|+.|+-.|..+++ .|.+|+|+++..+. .. .+
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~l-------------~~---~d----------------------- 227 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYAR--LGSRVTILARSTLL-------------FR---ED----------------------- 227 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCEEEEEEcCCCC-------------Cc---ch-----------------------
Confidence 479999999999999999988 68899999853211 00 00
Q ss_pred ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE 210 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~ 210 (481)
..+.+.+.+.+++.||+++++++|.++..++ +.+.+.+.+ .
T Consensus 228 -------------------------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~------g 268 (479)
T PRK14727 228 -------------------------------PLLGETLTACFEKEGIEVLNNTQASLVEHDD--NGFVLTTGH------G 268 (479)
T ss_pred -------------------------------HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC--CEEEEEEcC------C
Confidence 0011234445667899999999999998654 456565543 4
Q ss_pred EEEcCeEEEccCCChh
Q 011610 211 CIEADYLLIASGSSQQ 226 (481)
Q Consensus 211 ~i~ad~VIlAtG~~g~ 226 (481)
++.+|.||+|+|..+.
T Consensus 269 ~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 269 ELRAEKLLISTGRHAN 284 (479)
T ss_pred eEEeCEEEEccCCCCC
Confidence 6899999999998764
No 302
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.54 E-value=0.0012 Score=69.54 Aligned_cols=98 Identities=22% Similarity=0.349 Sum_probs=68.0
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+++|||||++|+-+|..+++ .|.+|+|+|+.. +. .. . .
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~ll-------------~~---~------------d---------- 210 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSR--LGTKVTIVEMAPQLL-------------PG---E------------D---------- 210 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcC-------------cc---c------------c----------
Confidence 479999999999999999988 688999998542 11 00 0 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
.++.+.+.+.+++.|++++++++|++++.++ ..+.+..+ +..
T Consensus 211 --------------------------------~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~--~~v~~~~~----g~~ 252 (458)
T PRK06912 211 --------------------------------EDIAHILREKLENDGVKIFTGAALKGLNSYK--KQALFEYE----GSI 252 (458)
T ss_pred --------------------------------HHHHHHHHHHHHHCCCEEEECCEEEEEEEcC--CEEEEEEC----Cce
Confidence 0112233445667899999999999997653 44444322 112
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 253 ~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 253 QEVNAEFVLVSVGRKPR 269 (458)
T ss_pred EEEEeCEEEEecCCccC
Confidence 47999999999997654
No 303
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.53 E-value=0.0022 Score=66.43 Aligned_cols=63 Identities=27% Similarity=0.327 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeE---EEEEeecccCceEEEE---cCeEEEccCC
Q 011610 159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKF---LLKVEKRTMNLVECIE---ADYLLIASGS 223 (481)
Q Consensus 159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~---~V~~~~~~~~~~~~i~---ad~VIlAtG~ 223 (481)
++-.+++.=|.+.++++||+++++++|++|..+..++.. .+... .++....|. -|.|++..|+
T Consensus 204 NQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~--~~g~~~~i~l~~~DlV~vT~GS 272 (500)
T PF06100_consen 204 NQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE--QDGKEETIDLGPDDLVFVTNGS 272 (500)
T ss_pred ccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE--cCCCeeEEEeCCCCEEEEECCc
Confidence 455677788999999999999999999999875312222 23332 122223332 4788888885
No 304
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.52 E-value=0.0013 Score=69.03 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=70.1
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||..|+-.|..+++ .|.+|+|+|+. .+.+ . .+ .
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~il~-------------~---~d------------~--------- 207 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHG--LGSETHLVIRHERVLR-------------S---FD------------S--------- 207 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCc-------------c---cC------------H---------
Confidence 579999999999999999998 68999999954 2220 0 00 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
.+.+.+.+.+++.||+++.++.|.++..++ ++.+.+++++ +
T Consensus 208 ---------------------------------~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~-~~~~~v~~~~-----g 248 (450)
T TIGR01421 208 ---------------------------------MISETITEEYEKEGINVHKLSKPVKVEKTV-EGKLVIHFED-----G 248 (450)
T ss_pred ---------------------------------HHHHHHHHHHHHcCCEEEcCCEEEEEEEeC-CceEEEEECC-----C
Confidence 011223345567799999999999998653 2335566553 3
Q ss_pred -EEEEcCeEEEccCCChh
Q 011610 210 -ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 -~~i~ad~VIlAtG~~g~ 226 (481)
..+.+|.||+|+|..+.
T Consensus 249 ~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 249 KSIDDVDELIWAIGRKPN 266 (450)
T ss_pred cEEEEcCEEEEeeCCCcC
Confidence 57999999999997664
No 305
>PLN02507 glutathione reductase
Probab=97.52 E-value=0.00081 Score=71.63 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=68.9
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||+.|+-.|..+++ .|.+|+|+++.. +.+ .
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~~l~-------------~--------------------------- 241 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRG--MGATVDLFFRKELPLR-------------G--------------------------- 241 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHH--cCCeEEEEEecCCcCc-------------c---------------------------
Confidence 479999999999999988888 688999998532 110 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
++ .++.+.+.+.+++.||++++++.|.+++.++ +.+.+.+.+ +
T Consensus 242 ~d------------------------------~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~--~~~~v~~~~-----g 284 (499)
T PLN02507 242 FD------------------------------DEMRAVVARNLEGRGINLHPRTNLTQLTKTE--GGIKVITDH-----G 284 (499)
T ss_pred cC------------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CeEEEEECC-----C
Confidence 00 0112223344567799999999999998654 455666554 5
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 285 ~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 285 EEFVADVVLFATGRAPN 301 (499)
T ss_pred cEEEcCEEEEeecCCCC
Confidence 67999999999997654
No 306
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.52 E-value=0.0009 Score=70.70 Aligned_cols=97 Identities=20% Similarity=0.268 Sum_probs=69.2
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+++|||+|..|+-.|..|++ .|.+|+++++. .+. .. .+ .
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~--~g~~Vtli~~~~~~l-------------~~---~d------------~--------- 218 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTE--LGVKVTLVSSRDRVL-------------PG---ED------------A--------- 218 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCcCC-------------CC---CC------------H---------
Confidence 479999999999999999988 68899999853 221 00 00 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
.+.+.+.+.+++.||+++++++|.+++.++ +.+.+.+.+ +
T Consensus 219 ---------------------------------~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~-----g 258 (466)
T PRK07845 219 ---------------------------------DAAEVLEEVFARRGMTVLKRSRAESVERTG--DGVVVTLTD-----G 258 (466)
T ss_pred ---------------------------------HHHHHHHHHHHHCCcEEEcCCEEEEEEEeC--CEEEEEECC-----C
Confidence 011233445567899999999999997654 455566554 5
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 259 ~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 259 RTVEGSHALMAVGSVPN 275 (466)
T ss_pred cEEEecEEEEeecCCcC
Confidence 67999999999997654
No 307
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.50 E-value=0.0011 Score=74.57 Aligned_cols=109 Identities=19% Similarity=0.289 Sum_probs=76.5
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
.+++|||||..|+-+|..|++ .|.+|+|+|+.... .. . .+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~--~G~~Vtvv~~~~~l-------------l~----------------------~---~l 180 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQN--LGMDVSVIHHAPGL-------------MA----------------------K---QL 180 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHh--cCCeEEEEccCCch-------------hh----------------------h---hc
Confidence 479999999999999999998 68899999853210 00 0 00
Q ss_pred ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE 210 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~ 210 (481)
+ ....+.+.+.+++.||++++++.|+++..++ ....|++.+ +.
T Consensus 181 d------------------------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~--~~~~v~~~d-----G~ 223 (785)
T TIGR02374 181 D------------------------------QTAGRLLQRELEQKGLTFLLEKDTVEIVGAT--KADRIRFKD-----GS 223 (785)
T ss_pred C------------------------------HHHHHHHHHHHHHcCCEEEeCCceEEEEcCC--ceEEEEECC-----CC
Confidence 0 0011233445567899999999999997543 455677765 67
Q ss_pred EEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 211 CIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 211 ~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
++.+|.||+|+|..+.. .+++..|+.
T Consensus 224 ~i~~D~Vi~a~G~~Pn~-~la~~~gl~ 249 (785)
T TIGR02374 224 SLEADLIVMAAGIRPND-ELAVSAGIK 249 (785)
T ss_pred EEEcCEEEECCCCCcCc-HHHHhcCCc
Confidence 89999999999977643 466666654
No 308
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.49 E-value=0.0013 Score=74.08 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=78.1
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
..++|||||..|+-+|..|++ .|.+|+|+|+.... .. . .+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~--~G~~VtvVe~~~~l-------------l~----------------------~---~l 185 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKN--LGVETHVIEFAPML-------------MA----------------------E---QL 185 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeccccc-------------hh----------------------h---hc
Confidence 479999999999999999998 68899999853210 00 0 00
Q ss_pred ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE 210 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~ 210 (481)
+ ....+.+.+.+++.||++++++.|.+|..++.+....|.+.+ +.
T Consensus 186 d------------------------------~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d-----G~ 230 (847)
T PRK14989 186 D------------------------------QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD-----GS 230 (847)
T ss_pred C------------------------------HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC-----CC
Confidence 0 011233445567789999999999999754211334566665 67
Q ss_pred EEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 211 CIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 211 ~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
++.+|.||+|+|..+.. .+++..|+.+
T Consensus 231 ~i~~D~Vv~A~G~rPn~-~L~~~~Gl~~ 257 (847)
T PRK14989 231 ELEVDFIVFSTGIRPQD-KLATQCGLAV 257 (847)
T ss_pred EEEcCEEEECCCcccCc-hHHhhcCccC
Confidence 89999999999987764 3677777654
No 309
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.48 E-value=0.00032 Score=70.01 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=45.0
Q ss_pred HhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 173 KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 173 ~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
..-||.++.+.+|++|...+ . .|++++ +.+|..|..++|||..+....+.++++..+
T Consensus 268 ~nGGvAvl~G~kvvkid~~d--~--~V~LnD-----G~~I~YdkcLIATG~~Pk~l~~~~~A~~ev 324 (659)
T KOG1346|consen 268 VNGGVAVLRGRKVVKIDEED--K--KVILND-----GTTIGYDKCLIATGVRPKKLQVFEEASEEV 324 (659)
T ss_pred ccCceEEEeccceEEeeccc--C--eEEecC-----CcEeehhheeeecCcCcccchhhhhcCHHh
Confidence 34589999999999998654 3 466777 889999999999999887666776666543
No 310
>PRK14694 putative mercuric reductase; Provisional
Probab=97.48 E-value=0.0015 Score=69.03 Aligned_cols=96 Identities=18% Similarity=0.324 Sum_probs=67.9
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
.+|+|||+|+.|+-.|..|++ .|.+|++++++.+. .. . .
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~--~g~~Vtlv~~~~~l-------------~~---~------------~----------- 217 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFAR--LGSRVTVLARSRVL-------------SQ---E------------D----------- 217 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEECCCCC-------------CC---C------------C-----------
Confidence 479999999999999999988 68889888753221 00 0 0
Q ss_pred ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE 210 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~ 210 (481)
..+.+.+.+.+++.|+++++++.|.+++.++ +.+.+.+. +.
T Consensus 218 -------------------------------~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~--~~~~v~~~------~~ 258 (468)
T PRK14694 218 -------------------------------PAVGEAIEAAFRREGIEVLKQTQASEVDYNG--REFILETN------AG 258 (468)
T ss_pred -------------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEC------CC
Confidence 0111233445567799999999999998654 44555554 24
Q ss_pred EEEcCeEEEccCCChh
Q 011610 211 CIEADYLLIASGSSQQ 226 (481)
Q Consensus 211 ~i~ad~VIlAtG~~g~ 226 (481)
++.+|.||+|+|..+.
T Consensus 259 ~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 259 TLRAEQLLVATGRTPN 274 (468)
T ss_pred EEEeCEEEEccCCCCC
Confidence 6999999999998764
No 311
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.47 E-value=0.00098 Score=68.11 Aligned_cols=61 Identities=21% Similarity=0.227 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE-EEEcCeEEEccCCChhHHHHHHH
Q 011610 160 SSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE-CIEADYLLIASGSSQQGHRLAAQ 233 (481)
Q Consensus 160 ~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~-~i~ad~VIlAtG~~g~g~~la~~ 233 (481)
-...+.+...+.++++||+|++++.|++++.+. |++++ +. +|.++.||-|+|-.+ ..+.+.
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~------v~~~~-----g~~~I~~~tvvWaaGv~a--~~~~~~ 268 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTLKD-----GEEEIPADTVVWAAGVRA--SPLLKD 268 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc------EEEcc-----CCeeEecCEEEEcCCCcC--Chhhhh
Confidence 456777788889999999999999999997542 45543 33 699999999999655 234444
No 312
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.46 E-value=0.0013 Score=69.86 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChh
Q 011610 166 DCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQ 226 (481)
Q Consensus 166 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~ 226 (481)
+.+.+.+++.|+++++++.|+++..++ ++...|.+.+ +.++.+|.||+|+|..+.
T Consensus 235 ~~l~~~L~~~GI~i~~~~~v~~i~~~~-~~~~~v~~~~-----g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 235 KELTKQLRANGINIMTNENPAKVTLNA-DGSKHVTFES-----GKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEEcC-CceEEEEEcC-----CCEEEcCEEEEeeCCCcC
Confidence 344455677899999999999998654 3445566544 457999999999997664
No 313
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.45 E-value=0.00027 Score=74.47 Aligned_cols=41 Identities=37% Similarity=0.430 Sum_probs=33.7
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
.....+|+||||||||+.||..|++...|++|+|+|+. .++
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 33457999999999999999999863368999999965 554
No 314
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.44 E-value=0.0014 Score=68.42 Aligned_cols=111 Identities=25% Similarity=0.334 Sum_probs=76.4
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
..++|||||+.|+-.|..+++ -|.+|+|+|+. .+.. + . +
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~--LG~~VTiie~~~~iLp-------------~---~------------D---------- 213 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAA--LGSKVTVVERGDRILP-------------G---E------------D---------- 213 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCCC-------------c---C------------C----------
Confidence 579999999999999999998 69999999964 3220 0 0 1
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
+++.+.+.+.+++.|++++++++|+.++..+ +.+.+.+++ +..
T Consensus 214 --------------------------------~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~--~~v~v~~~~---g~~ 256 (454)
T COG1249 214 --------------------------------PEISKELTKQLEKGGVKILLNTKVTAVEKKD--DGVLVTLED---GEG 256 (454)
T ss_pred --------------------------------HHHHHHHHHHHHhCCeEEEccceEEEEEecC--CeEEEEEec---CCC
Confidence 1122334445556689999999999998765 336677664 111
Q ss_pred EEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610 210 ECIEADYLLIASGSSQQGHRL-AAQLGHSI 238 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i 238 (481)
..+.+|.|++|+|..|..-.+ ++..|+++
T Consensus 257 ~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~ 286 (454)
T COG1249 257 GTIEADAVLVAIGRKPNTDGLGLENAGVEL 286 (454)
T ss_pred CEEEeeEEEEccCCccCCCCCChhhcCceE
Confidence 278999999999976543212 44555554
No 315
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.43 E-value=0.0018 Score=67.80 Aligned_cols=97 Identities=25% Similarity=0.252 Sum_probs=68.6
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
.+|+|||+|+.|+-.|..+++ .|.+|+|+|+...- ... + .
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~-------------l~~-----------~---~----------- 198 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFAN--FGSKVTILEAASLF-------------LPR-----------E---D----------- 198 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCC-------------CCC-----------c---C-----------
Confidence 479999999999999999988 68899999864210 000 0 0
Q ss_pred ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE 210 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~ 210 (481)
..+.+.+.+.+++.||+++++++|.++..++ +.+.+.+++ .
T Consensus 199 -------------------------------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~v~v~~~~------g 239 (441)
T PRK08010 199 -------------------------------RDIADNIATILRDQGVDIILNAHVERISHHE--NQVQVHSEH------A 239 (441)
T ss_pred -------------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEcC------C
Confidence 0111234455677899999999999998654 455555542 3
Q ss_pred EEEcCeEEEccCCChh
Q 011610 211 CIEADYLLIASGSSQQ 226 (481)
Q Consensus 211 ~i~ad~VIlAtG~~g~ 226 (481)
++.+|.||+|+|..+.
T Consensus 240 ~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 240 QLAVDALLIASGRQPA 255 (441)
T ss_pred eEEeCEEEEeecCCcC
Confidence 5899999999997664
No 316
>PRK13984 putative oxidoreductase; Provisional
Probab=97.42 E-value=0.00046 Score=75.32 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=32.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
...+|+|||+|++|+++|..|++ .|++|+|+|+. .++
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~~g 319 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSKPG 319 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCC
Confidence 46799999999999999999999 79999999965 444
No 317
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.40 E-value=0.0025 Score=67.46 Aligned_cols=101 Identities=17% Similarity=0.204 Sum_probs=69.7
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
..|+|||+|..|+-+|..+++ .|.+|+|+|+.. +. .. . .
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------------~~--~------------d---------- 223 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRR--LGAEVTILEALPAFL--------------AA--A------------D---------- 223 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCccC--------------Cc--C------------C----------
Confidence 589999999999999999988 688999999542 11 00 0 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
.++.+.+.+.+++.|++++++++|+++..++ +.+.+...+ ..+..
T Consensus 224 --------------------------------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~-~~g~~ 268 (475)
T PRK06327 224 --------------------------------EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG--KGVSVAYTD-ADGEA 268 (475)
T ss_pred --------------------------------HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC--CEEEEEEEe-CCCce
Confidence 0111222334556799999999999998654 445555443 11222
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
..+.+|.||+|+|..+.
T Consensus 269 ~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 269 QTLEVDKLIVSIGRVPN 285 (475)
T ss_pred eEEEcCEEEEccCCccC
Confidence 57999999999997654
No 318
>PRK07846 mycothione reductase; Reviewed
Probab=97.38 E-value=0.0016 Score=68.49 Aligned_cols=96 Identities=25% Similarity=0.325 Sum_probs=67.6
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||+.|+-.|..+++ .|.+|+|+|+.. +. . ..+ .
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~~ll--------------~--~~d------------~--------- 207 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSA--LGVRVTVVNRSGRLL--------------R--HLD------------D--------- 207 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccc--------------c--ccC------------H---------
Confidence 589999999999999999998 789999999642 11 0 000 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
++ .+.+.+ ..+.+++++++++|++++.++ +.+.+.+.+ +
T Consensus 208 ----~~-----------------------------~~~l~~-l~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~-----g 246 (451)
T PRK07846 208 ----DI-----------------------------SERFTE-LASKRWDVRLGRNVVGVSQDG--SGVTLRLDD-----G 246 (451)
T ss_pred ----HH-----------------------------HHHHHH-HHhcCeEEEeCCEEEEEEEcC--CEEEEEECC-----C
Confidence 00 011111 123579999999999998654 455666654 5
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 247 ~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 247 STVEADVLLVATGRVPN 263 (451)
T ss_pred cEeecCEEEEEECCccC
Confidence 68999999999997664
No 319
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.30 E-value=0.0029 Score=66.25 Aligned_cols=104 Identities=11% Similarity=0.134 Sum_probs=72.7
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||+.|+-.|..|++ .|.+|+|+|+.. +.. .
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~~~l~~-------------~--------------------------- 186 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYE--RGLHPTLIHRSDKINK-------------L--------------------------- 186 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCcEEEEecccccch-------------h---------------------------
Confidence 479999999999999999998 689999999542 110 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
++ .++.+.+.+.+++.||+++++++|++++. . .|++.+ +
T Consensus 187 ~d------------------------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~----~--~v~~~~-----g 225 (438)
T PRK13512 187 MD------------------------------ADMNQPILDELDKREIPYRLNEEIDAING----N--EVTFKS-----G 225 (438)
T ss_pred cC------------------------------HHHHHHHHHHHHhcCCEEEECCeEEEEeC----C--EEEECC-----C
Confidence 00 01122334455678999999999999852 2 345544 4
Q ss_pred EEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 210 ECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
..+.+|.||+|+|..+.. .+++..|+.+
T Consensus 226 ~~~~~D~vl~a~G~~pn~-~~l~~~gl~~ 253 (438)
T PRK13512 226 KVEHYDMIIEGVGTHPNS-KFIESSNIKL 253 (438)
T ss_pred CEEEeCEEEECcCCCcCh-HHHHhcCccc
Confidence 578999999999977642 3456666654
No 320
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.29 E-value=0.00043 Score=69.66 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=38.3
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCceEE
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKVKI 92 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~~~ 92 (481)
..+.++|+|+|||++||++|++|++..+...|+|+| .++.|+.+..
T Consensus 8 ~~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 8 AVSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ceecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 445689999999999999999999976666778899 5688876654
No 321
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.28 E-value=0.0029 Score=65.07 Aligned_cols=107 Identities=24% Similarity=0.254 Sum_probs=74.9
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHh
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFS 128 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (481)
..+++|||+|+.|+.+|..|++ .|++|+++|.. +++. +. + .
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~--~G~~v~l~e~~~~~~~--------~~-----------------------~-----~ 177 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAK--RGKKVTLIEAADRLGG--------QL-----------------------L-----D 177 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEcccccch--------hh-----------------------h-----h
Confidence 3699999999999999999999 79999999954 4431 00 0 0
Q ss_pred cCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEE--EEEeeccc
Q 011610 129 LHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFL--LKVEKRTM 206 (481)
Q Consensus 129 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~--V~~~~~~~ 206 (481)
..+.+.+.+.+++.|+++++++.+.+++... +.... +....
T Consensus 178 ---------------------------------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~-~~~~~~~~~~~~--- 220 (415)
T COG0446 178 ---------------------------------PEVAEELAELLEKYGVELLLGTKVVGVEGKG-NTLVVERVVGID--- 220 (415)
T ss_pred ---------------------------------HHHHHHHHHHHHHCCcEEEeCCceEEEEccc-CcceeeEEEEeC---
Confidence 0112334455667789999999999998754 22222 34443
Q ss_pred CceEEEEcCeEEEccCCChhHHHHHHHc
Q 011610 207 NLVECIEADYLLIASGSSQQGHRLAAQL 234 (481)
Q Consensus 207 ~~~~~i~ad~VIlAtG~~g~g~~la~~~ 234 (481)
+..+.+|.+++++|..+. ..++...
T Consensus 221 --~~~~~~d~~~~~~g~~p~-~~l~~~~ 245 (415)
T COG0446 221 --GEEIKADLVIIGPGERPN-VVLANDA 245 (415)
T ss_pred --CcEEEeeEEEEeeccccc-HHHHhhC
Confidence 678999999999998764 3444443
No 322
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.27 E-value=0.0032 Score=66.80 Aligned_cols=100 Identities=17% Similarity=0.086 Sum_probs=68.1
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
.+++|||||+.|+-.|..+++ .|.+|+|+++..+.+ . .+ +
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~~l~-------------~---~d------------~---------- 220 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAG--IGLDVTVMVRSILLR-------------G---FD------------Q---------- 220 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHH--hCCcEEEEEeccccc-------------c---cC------------H----------
Confidence 479999999999999999998 688999987532210 0 00 0
Q ss_pred ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceE
Q 011610 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVE 210 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~ 210 (481)
++.+.+.+.+++.||++++++.+.++...+ +.+.|+..+ .+...
T Consensus 221 --------------------------------~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~--~~~~~ 264 (484)
T TIGR01438 221 --------------------------------DCANKVGEHMEEHGVKFKRQFVPIKVEQIE--AKVKVTFTD--STNGI 264 (484)
T ss_pred --------------------------------HHHHHHHHHHHHcCCEEEeCceEEEEEEcC--CeEEEEEec--CCcce
Confidence 011233345567799999999999997654 445555543 01124
Q ss_pred EEEcCeEEEccCCChh
Q 011610 211 CIEADYLLIASGSSQQ 226 (481)
Q Consensus 211 ~i~ad~VIlAtG~~g~ 226 (481)
++.+|.||+|+|..+.
T Consensus 265 ~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 265 EEEYDTVLLAIGRDAC 280 (484)
T ss_pred EEEeCEEEEEecCCcC
Confidence 7999999999997653
No 323
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.25 E-value=0.00036 Score=67.75 Aligned_cols=36 Identities=25% Similarity=0.189 Sum_probs=32.9
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPL 87 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g 87 (481)
++|++|||+|.+|+..|..|++ .|.+|+|+| |+.+|
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~--~gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQ--LGKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHH--cCCEEEEEeccccCC
Confidence 4899999999999999998888 799999999 66777
No 324
>PLN02546 glutathione reductase
Probab=97.24 E-value=0.0037 Score=67.34 Aligned_cols=110 Identities=20% Similarity=0.213 Sum_probs=72.7
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||..|+-.|..+++ .+.+|+|+|+.. +.. .
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~--~g~~Vtlv~~~~~il~----------------------------------------~ 290 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNG--LKSDVHVFIRQKKVLR----------------------------------------G 290 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHh--cCCeEEEEEecccccc----------------------------------------c
Confidence 579999999999999998887 678899998532 110 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
++ ..+.+.+.+.+++.||++++++.|.++...+ ++.+.+.+.+ +
T Consensus 291 ~d------------------------------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~-~g~v~v~~~~-----g 334 (558)
T PLN02546 291 FD------------------------------EEVRDFVAEQMSLRGIEFHTEESPQAIIKSA-DGSLSLKTNK-----G 334 (558)
T ss_pred cC------------------------------HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcC-CCEEEEEECC-----e
Confidence 00 1112234445667899999999999997643 3445555442 3
Q ss_pred EEEEcCeEEEccCCChhHHHH-HHHcCCCc
Q 011610 210 ECIEADYLLIASGSSQQGHRL-AAQLGHSI 238 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~g~~l-a~~~G~~i 238 (481)
....+|.||+|+|..+....+ ++.+|+++
T Consensus 335 ~~~~~D~Viva~G~~Pnt~~L~le~~gl~~ 364 (558)
T PLN02546 335 TVEGFSHVMFATGRKPNTKNLGLEEVGVKM 364 (558)
T ss_pred EEEecCEEEEeeccccCCCcCChhhcCCcC
Confidence 444589999999976653222 45556544
No 325
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.22 E-value=0.0052 Score=65.02 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=72.2
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||+.|+-.|..+++ .|.+|+|+|+.. +. .+ .+ .
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~il-------------~~---~d------------~--------- 215 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHR--LGSEVDVVEMFDQVI-------------PA---AD------------K--------- 215 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCCEEEEecCCCCC-------------Cc---CC------------H---------
Confidence 579999999999999999998 789999999542 21 00 00 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
++.+.+.+.+++. +++++++.|.+++.++ +.+.+...+ ..+..
T Consensus 216 ---------------------------------~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~--~~~~v~~~~-~~~~~ 258 (471)
T PRK06467 216 ---------------------------------DIVKVFTKRIKKQ-FNIMLETKVTAVEAKE--DGIYVTMEG-KKAPA 258 (471)
T ss_pred ---------------------------------HHHHHHHHHHhhc-eEEEcCCEEEEEEEcC--CEEEEEEEe-CCCcc
Confidence 0111223344455 8899999999998654 445555442 11113
Q ss_pred EEEEcCeEEEccCCChhHHH-HHHHcCCCc
Q 011610 210 ECIEADYLLIASGSSQQGHR-LAAQLGHSI 238 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~g~~-la~~~G~~i 238 (481)
.++.+|.||+|+|..+.... .++..|+++
T Consensus 259 ~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~ 288 (471)
T PRK06467 259 EPQRYDAVLVAVGRVPNGKLLDAEKAGVEV 288 (471)
T ss_pred eEEEeCEEEEeecccccCCccChhhcCceE
Confidence 57999999999997654321 234445443
No 326
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.19 E-value=0.0039 Score=62.72 Aligned_cols=150 Identities=14% Similarity=0.106 Sum_probs=86.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC-CCCCC--ceEEecCCceeeccCCCcchhHHhhccCCCChhchhh
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK-GKPLS--KVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGS 125 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~-~~~g~--k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (481)
..+|++.||-||+-|+.|+.|.+. .+.+++.+|+ +..-. ..++. .+++... |. ++++ .
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~-~~~~~lFLerkp~F~WHpGmlle---gstlQv~-------Fl-------kDLV-T 64 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEH-SGLKSLFLERKPDFSWHPGMLLE---GSTLQVP-------FL-------KDLV-T 64 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccc-cCcceEEEecCCCCCcCCCcccC---Ccccccc-------ch-------hhhc-c
Confidence 468999999999999999999884 3588999994 44321 11110 0111110 00 1121 1
Q ss_pred HHhcCChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEE--EEEee
Q 011610 126 FFSLHGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFL--LKVEK 203 (481)
Q Consensus 126 ~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~--V~~~~ 203 (481)
..+..++..+++++.++|--+..-..+..+| ...++-+++.-.+... -.++++++|++|...+.+.... +.+.+
T Consensus 65 l~~PTs~ySFLNYL~~h~RLy~Fl~~e~f~i---~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~ 140 (436)
T COG3486 65 LVDPTSPYSFLNYLHEHGRLYEFLNYETFHI---PRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN 140 (436)
T ss_pred ccCCCCchHHHHHHHHcchHhhhhhhhcccc---cHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCC
Confidence 1122334567777777763222111112222 2345555555555555 6789999999774433123333 44443
Q ss_pred cccCceEEEEcCeEEEccCCChh
Q 011610 204 RTMNLVECIEADYLLIASGSSQQ 226 (481)
Q Consensus 204 ~~~~~~~~i~ad~VIlAtG~~g~ 226 (481)
+.+++|+.||+.+|..+.
T Consensus 141 -----~~~y~ar~lVlg~G~~P~ 158 (436)
T COG3486 141 -----GTVYRARNLVLGVGTQPY 158 (436)
T ss_pred -----CcEEEeeeEEEccCCCcC
Confidence 569999999999998653
No 327
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.19 E-value=0.0028 Score=63.69 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=31.2
Q ss_pred CCCCCCeEEEECCchHHHHHHHHHhcc--CCCCcEEEEeCC
Q 011610 46 HTSSEELLVVVGGGAAGVYGAIRAKTV--APKLNVVIIEKG 84 (481)
Q Consensus 46 ~~~~~~DVvIIGgG~aGl~aA~~la~~--~~g~~V~llE~~ 84 (481)
+.+..+||+|+||||.|++.|..|..+ .+..+|+|+|..
T Consensus 32 ~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 32 TDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred CCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 444579999999999999999888752 135789999954
No 328
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.13 E-value=0.0041 Score=65.43 Aligned_cols=96 Identities=26% Similarity=0.325 Sum_probs=66.7
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+++|||||+.|+-.|..+++ .|.+|+++|+.. +. .. .+ .
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~ll-------------~~---~d------------~--------- 210 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSA--LGTRVTIVNRSTKLL-------------RH---LD------------E--------- 210 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCccc-------------cc---cC------------H---------
Confidence 589999999999999999998 689999999542 11 00 00 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
++ ...+.+. .+.+++++++++|.+++.++ +.+.+.+.+ +
T Consensus 211 ----~~-----------------------------~~~l~~~-~~~gI~i~~~~~V~~i~~~~--~~v~v~~~~-----g 249 (452)
T TIGR03452 211 ----DI-----------------------------SDRFTEI-AKKKWDIRLGRNVTAVEQDG--DGVTLTLDD-----G 249 (452)
T ss_pred ----HH-----------------------------HHHHHHH-HhcCCEEEeCCEEEEEEEcC--CeEEEEEcC-----C
Confidence 00 0111111 23479999999999998654 456566554 4
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 250 ~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 250 STVTADVLLVATGRVPN 266 (452)
T ss_pred CEEEcCEEEEeeccCcC
Confidence 57999999999997654
No 329
>PTZ00058 glutathione reductase; Provisional
Probab=97.11 E-value=0.0063 Score=65.54 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=67.8
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||||..|+-.|..+++ .|.+|+|+|+.. +. . .
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~--~G~~Vtli~~~~~il--------------~--------------------------~ 275 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNR--LGAESYIFARGNRLL--------------R--------------------------K 275 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHH--cCCcEEEEEeccccc--------------c--------------------------c
Confidence 579999999999999999888 688999998542 11 0 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
++ .++.+.+.+.+++.||++++++.|.++..++ ++.+.+...+ ++
T Consensus 276 ~d------------------------------~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~-~~~v~v~~~~----~~ 320 (561)
T PTZ00058 276 FD------------------------------ETIINELENDMKKNNINIITHANVEEIEKVK-EKNLTIYLSD----GR 320 (561)
T ss_pred CC------------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-CCcEEEEECC----CC
Confidence 00 0111223345567799999999999998653 2334444322 13
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 321 ~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 321 KYEHFDYVIYCVGRSPN 337 (561)
T ss_pred EEEECCEEEECcCCCCC
Confidence 57999999999997654
No 330
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.06 E-value=0.00062 Score=76.16 Aligned_cols=35 Identities=23% Similarity=0.165 Sum_probs=31.8
Q ss_pred CCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 48 SSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 48 ~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
+...+|+||||||||++||+.|++ .|++|+|+|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccc
Confidence 356799999999999999999999 79999999954
No 331
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.02 E-value=0.0007 Score=69.06 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=33.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
...+++|||||+||+.||+.|++ .|++|.|+||. .+|
T Consensus 123 v~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKepsiG 160 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSIG 160 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCCccc
Confidence 45789999999999999999999 79999999965 666
No 332
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.96 E-value=0.011 Score=57.99 Aligned_cols=97 Identities=19% Similarity=0.269 Sum_probs=65.6
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
.+|+|||+|++|+-+|..+++ .+.+|+++++...- . . .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~--~~~~V~~v~~~~~~----------------~--~-----------~----------- 179 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTR--IAKKVTLVHRRDKF----------------R--A-----------E----------- 179 (300)
T ss_pred CEEEEECCChHHHHHHHHHHh--hcCEEEEEEeCccc----------------C--c-----------C-----------
Confidence 589999999999999999988 57788888753100 0 0 0
Q ss_pred ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhC-CCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHR-GVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
..+.+.+++. |+++++++.+.++..++ ....+.+.+...+.+
T Consensus 180 -----------------------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~ 222 (300)
T TIGR01292 180 -----------------------------------KILLDRLRKNPNIEFLWNSTVKEIVGDN--KVEGVKIKNTVTGEE 222 (300)
T ss_pred -----------------------------------HHHHHHHHhCCCeEEEeccEEEEEEccC--cEEEEEEEecCCCce
Confidence 0011223445 89999999999997542 333454432122335
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 223 ~~i~~D~vi~a~G~~~~ 239 (300)
T TIGR01292 223 EELKVDGVFIAIGHEPN 239 (300)
T ss_pred EEEEccEEEEeeCCCCC
Confidence 68999999999997654
No 333
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.92 E-value=0.015 Score=61.36 Aligned_cols=99 Identities=24% Similarity=0.302 Sum_probs=67.7
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC-CCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK-PLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~-~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
.+|+|||+|+.|+-.|..+++ .|.+|+++|+.. +. . . +
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------------~--~----------------~------- 208 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSR--LGVKVTVFERGDRIL--------------P--L----------------E------- 208 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcC--------------c--c----------------h-------
Confidence 579999999999999999998 688999999542 21 0 0 0
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
+ .++.+.+.+.+++. ++++++++|.+++.++ +..+.++..+ +.+
T Consensus 209 -d------------------------------~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~-~~~v~~~~~~---~~~ 252 (460)
T PRK06292 209 -D------------------------------PEVSKQAQKILSKE-FKIKLGAKVTSVEKSG-DEKVEELEKG---GKT 252 (460)
T ss_pred -h------------------------------HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcC-CceEEEEEcC---Cce
Confidence 0 01122333455667 9999999999998654 2234443221 224
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 253 ~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 253 ETIEADYVLVATGRRPN 269 (460)
T ss_pred EEEEeCEEEEccCCccC
Confidence 67999999999997654
No 334
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.86 E-value=0.0017 Score=71.38 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=32.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
..++|+|||||++|+++|+.|++ .|++|+|+|+. .+|
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~~~G 229 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANEQAG 229 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCC
Confidence 45799999999999999999999 79999999965 555
No 335
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.85 E-value=0.01 Score=61.97 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 166 DCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 166 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
+.+.+.+++.||+++++++|.++.. + .|.+++ ++++.+|.||.|+|..+. .+++.+|+.
T Consensus 232 ~~~~~~L~~~gV~v~~~~~v~~v~~----~--~v~~~~-----g~~i~~d~vi~~~G~~~~--~~~~~~~l~ 290 (424)
T PTZ00318 232 KYGQRRLRRLGVDIRTKTAVKEVLD----K--EVVLKD-----GEVIPTGLVVWSTGVGPG--PLTKQLKVD 290 (424)
T ss_pred HHHHHHHHHCCCEEEeCCeEEEEeC----C--EEEECC-----CCEEEccEEEEccCCCCc--chhhhcCCc
Confidence 4445566788999999999999863 2 245555 568999999999996553 345555543
No 336
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.84 E-value=0.0021 Score=67.21 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=31.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
....|+||||||||+.||..|+++ .|++|+|+|+. .++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPY 76 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCc
Confidence 346899999999999999986542 58999999965 555
No 337
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=96.74 E-value=0.00088 Score=68.85 Aligned_cols=47 Identities=23% Similarity=0.225 Sum_probs=36.8
Q ss_pred HHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610 170 TEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 170 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 223 (481)
..+...|.+|+++++|++|+.++ +.+.|.+.+ +.++.||+||+|+..
T Consensus 217 ~~~~~~g~~i~l~~~V~~I~~~~--~~v~v~~~~-----g~~~~ad~VI~a~p~ 263 (450)
T PF01593_consen 217 LAAEELGGEIRLNTPVTRIERED--GGVTVTTED-----GETIEADAVISAVPP 263 (450)
T ss_dssp HHHHHHGGGEESSEEEEEEEEES--SEEEEEETT-----SSEEEESEEEE-S-H
T ss_pred HHHhhcCceeecCCcceeccccc--ccccccccc-----ceEEecceeeecCch
Confidence 33444577999999999999986 778888876 568999999999873
No 338
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.74 E-value=0.041 Score=57.13 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=44.1
Q ss_pred CeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEE
Q 011610 152 GRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLI 219 (481)
Q Consensus 152 g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIl 219 (481)
..+||.-+ ..++-+++-+.+.-.|..+.+++.|.+|..++++...+|... ++++.|+.||.
T Consensus 223 PfLyP~YG-~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~------ge~v~~k~vI~ 283 (438)
T PF00996_consen 223 PFLYPLYG-LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSE------GEVVKAKKVIG 283 (438)
T ss_dssp SEEEETT--TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEET------TEEEEESEEEE
T ss_pred CEEEEccC-CccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecC------CEEEEcCEEEE
Confidence 46788665 448888998888889999999999999988651234456654 68999999994
No 339
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.71 E-value=0.02 Score=61.22 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=66.9
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
.+|+|||||..|+-+|..|++ .+.+|+|+|+.... . . ..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~--~g~~Vtli~~~~~l-------------------~-----------~----~~----- 391 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAG--IVRHVTVLEFADEL-------------------K-----------A----DK----- 391 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHh--cCcEEEEEEeCCcC-------------------C-----------h----hH-----
Confidence 589999999999999999998 57889998842100 0 0 00
Q ss_pred ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHh-CCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKH-RGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
.+.+.+++ .||++++++.|+++..++ +....|++.+...+..
T Consensus 392 ------------------------------------~l~~~l~~~~gV~i~~~~~v~~i~~~~-~~v~~v~~~~~~~~~~ 434 (515)
T TIGR03140 392 ------------------------------------VLQDKLKSLPNVDILTSAQTTEIVGDG-DKVTGIRYQDRNSGEE 434 (515)
T ss_pred ------------------------------------HHHHHHhcCCCCEEEECCeeEEEEcCC-CEEEEEEEEECCCCcE
Confidence 01122233 589999999999997653 2333466554222334
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
..+.+|.||+|+|..+.
T Consensus 435 ~~i~~D~vi~a~G~~Pn 451 (515)
T TIGR03140 435 KQLDLDGVFVQIGLVPN 451 (515)
T ss_pred EEEEcCEEEEEeCCcCC
Confidence 67999999999998765
No 340
>PRK10262 thioredoxin reductase; Provisional
Probab=96.69 E-value=0.02 Score=57.18 Aligned_cols=102 Identities=20% Similarity=0.330 Sum_probs=68.2
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
.+|+|||+|..|+-.|..|++ .+.+|+++++.... . . ...+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~--~~~~Vtlv~~~~~~----------------~-~------------~~~~-------- 187 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRDGF----------------R-A------------EKIL-------- 187 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh--hCCEEEEEEECCcc----------------C-C------------CHHH--------
Confidence 589999999999999999998 57889999853210 0 0 0000
Q ss_pred ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeeccc-Cce
Q 011610 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTM-NLV 209 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~-~~~ 209 (481)
.+.+.+.+++.||++++++.|+++..++ ++...|++.+... +..
T Consensus 188 ----------------------------------~~~~~~~l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~~~~~~~ 232 (321)
T PRK10262 188 ----------------------------------IKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNI 232 (321)
T ss_pred ----------------------------------HHHHHhhccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEcCCCCeE
Confidence 1122334456789999999999997543 2333455543111 123
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.||+|+|..+.
T Consensus 233 ~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 233 ESLDVAGLFVAIGHSPN 249 (321)
T ss_pred EEEECCEEEEEeCCccC
Confidence 57999999999997664
No 341
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.65 E-value=0.021 Score=62.69 Aligned_cols=32 Identities=22% Similarity=0.111 Sum_probs=28.0
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.+|+|||||..|+-.|..+++ .|.+|+|+|+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~--~G~eVTLIe~~ 344 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTA--LGSEVVSFEYS 344 (659)
T ss_pred CceEEECCCHHHHHHHHHHHh--CCCeEEEEecc
Confidence 479999999999999988888 68899999954
No 342
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.65 E-value=0.0018 Score=64.28 Aligned_cols=36 Identities=36% Similarity=0.453 Sum_probs=31.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
....|+|||+||||+.+|..|.++.++++|.|+|+.
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~ 54 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKL 54 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecC
Confidence 345999999999999999999886567999999965
No 343
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.64 E-value=0.02 Score=55.86 Aligned_cols=39 Identities=26% Similarity=0.258 Sum_probs=32.6
Q ss_pred CCCCCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe
Q 011610 44 LTHTSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE 82 (481)
Q Consensus 44 ~~~~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE 82 (481)
......++.|+|||||.+|+..|..+.++-+.-+|.|+|
T Consensus 33 ~~~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIve 71 (446)
T KOG3851|consen 33 ARFARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVE 71 (446)
T ss_pred hhhcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEec
Confidence 344557899999999999999999998854455899999
No 344
>PLN02976 amine oxidase
Probab=96.50 E-value=0.0037 Score=72.35 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=34.8
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe-CCCCCCce
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KGKPLSKV 90 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~~~g~k~ 90 (481)
..+||+|||||++|+++|+.|++ .|++|+||| ++.+|+.+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~--~G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQR--QGFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHH--CCCcEEEEeeccCCCCce
Confidence 45899999999999999999999 789999999 45777544
No 345
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.40 E-value=0.038 Score=58.25 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=27.6
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEK 83 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~ 83 (481)
..+|+|||||..|+-+|..|++ .|. +|+++++
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~--~G~~~Vtlv~~ 305 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKR--LGAESVTIVYR 305 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCCeEEEeee
Confidence 3589999999999999999988 566 7888884
No 346
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.39 E-value=0.051 Score=55.26 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=41.1
Q ss_pred HHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCC
Q 011610 167 CLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHS 237 (481)
Q Consensus 167 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~ 237 (481)
.+.+.+++.||+++.+++|.++. + + .|.+.+ +.++.+|.||+|+|..+. ..+...|+.
T Consensus 196 ~~~~~l~~~gV~v~~~~~v~~i~--~--~--~v~~~~-----g~~i~~D~vi~a~G~~p~--~~l~~~gl~ 253 (364)
T TIGR03169 196 LVLRLLARRGIEVHEGAPVTRGP--D--G--ALILAD-----GRTLPADAILWATGARAP--PWLAESGLP 253 (364)
T ss_pred HHHHHHHHCCCEEEeCCeeEEEc--C--C--eEEeCC-----CCEEecCEEEEccCCChh--hHHHHcCCC
Confidence 34455677899999999999884 2 3 355554 568999999999998763 344445543
No 347
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.28 E-value=0.032 Score=53.98 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=29.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhc-----cCCCCcEEEEe-CC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKT-----VAPKLNVVIIE-KG 84 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~-----~~~g~~V~llE-~~ 84 (481)
+..+|+|||+|..||++|+.+.+ .-+..+|.+++ |.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 45799999999999999987776 22557899998 54
No 348
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.27 E-value=0.0068 Score=63.40 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=32.4
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
..+|+|||+||+|+++|..|++ .|++|+++|+. .+|
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~~~G 159 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVALDG 159 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcCCCc
Confidence 3799999999999999999999 79999999965 555
No 349
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.26 E-value=0.035 Score=56.35 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=27.0
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCc-EEEEeC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEK 83 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~-V~llE~ 83 (481)
..|+|||+|..|+-+|..+++ .|.+ |+|+++
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~--~g~~~Vtvi~~ 204 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVL--LGAEKVYLAYR 204 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCCeEEEEee
Confidence 479999999999999999887 5776 999884
No 350
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.19 E-value=0.056 Score=57.91 Aligned_cols=98 Identities=21% Similarity=0.268 Sum_probs=66.5
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCCCceEEecCCceeeccCCCcchhHHhhccCCCChhchhhHHhcC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPLSKVKISGGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSLH 130 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g~k~~~sG~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (481)
.+|+|||||..|+-+|..|+. .+.+|+|+++.... . . . .
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~--~~~~Vtlv~~~~~l-------------~-----~-----------~-----~----- 390 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAG--IVKHVTVLEFAPEL-------------K-----A-----------D-----Q----- 390 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHh--cCCEEEEEEECccc-------------c-----c-----------c-----H-----
Confidence 589999999999999999998 67889988743210 0 0 0 0
Q ss_pred ChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHH-hCCCEEEcCceEEEEEecCCCCeEEEEEeecccCce
Q 011610 131 GPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAK-HRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLV 209 (481)
Q Consensus 131 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~-~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 209 (481)
.+.+.+. ..||++++++.+.++..++ +....|++.+...+..
T Consensus 391 ------------------------------------~l~~~l~~~~gI~i~~~~~v~~i~~~~-g~v~~v~~~~~~~g~~ 433 (517)
T PRK15317 391 ------------------------------------VLQDKLRSLPNVTIITNAQTTEVTGDG-DKVTGLTYKDRTTGEE 433 (517)
T ss_pred ------------------------------------HHHHHHhcCCCcEEEECcEEEEEEcCC-CcEEEEEEEECCCCcE
Confidence 0011122 2589999999999998653 2333455553222334
Q ss_pred EEEEcCeEEEccCCChh
Q 011610 210 ECIEADYLLIASGSSQQ 226 (481)
Q Consensus 210 ~~i~ad~VIlAtG~~g~ 226 (481)
.++.+|.|++|+|..+.
T Consensus 434 ~~i~~D~v~~~~G~~p~ 450 (517)
T PRK15317 434 HHLELEGVFVQIGLVPN 450 (517)
T ss_pred EEEEcCEEEEeECCccC
Confidence 57999999999997664
No 351
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.10 E-value=0.11 Score=53.56 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610 161 SSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 161 a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
...+.+.+....+++||+++.++.+.+++....++...|.+.+ +.++.||.||+.+|+.+
T Consensus 254 ~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d-----g~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 254 GPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD-----GKTLEADLVVVGIGIKP 313 (478)
T ss_pred hHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc-----CCEeccCeEEEeecccc
Confidence 4556677888889999999999999999876524556788877 78999999999999765
No 352
>PRK12831 putative oxidoreductase; Provisional
Probab=95.90 E-value=0.092 Score=55.45 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=28.4
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (481)
..+|+|||||..|+-+|..|.+ .|.+|+++++
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r--~Ga~Vtlv~r 312 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALR--LGAEVHIVYR 312 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHH--cCCEEEEEee
Confidence 3589999999999999999998 6888999884
No 353
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.89 E-value=0.08 Score=61.17 Aligned_cols=64 Identities=27% Similarity=0.325 Sum_probs=44.8
Q ss_pred HHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 171 EAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 171 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
.+++.||++++++.|+++..++ ....|++.. ..+.+.++.||.|+++.|-.+. ..++..+|..+
T Consensus 360 ~L~~~GV~i~~~~~v~~i~g~~--~v~~V~l~~-~~g~~~~i~~D~V~va~G~~Pn-t~L~~~lg~~~ 423 (985)
T TIGR01372 360 EARELGIEVLTGHVVAATEGGK--RVSGVAVAR-NGGAGQRLEADALAVSGGWTPV-VHLFSQRGGKL 423 (985)
T ss_pred HHHHcCCEEEcCCeEEEEecCC--cEEEEEEEe-cCCceEEEECCEEEEcCCcCch-hHHHHhcCCCe
Confidence 4567799999999999997542 333444431 1123568999999999998775 36777777654
No 354
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.81 E-value=0.23 Score=50.38 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=39.0
Q ss_pred hCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCC
Q 011610 174 HRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 174 ~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~ 223 (481)
+..+.++.+++|..++..+ ++.+.+.+.....++..++..|.||+|||=
T Consensus 290 ~~~v~l~~~~ev~~~~~~G-~g~~~l~~~~~~~~~~~t~~~D~vIlATGY 338 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAG-DGRYRLTLRHHETGELETVETDAVILATGY 338 (436)
T ss_pred CCCeeeccccceeeeecCC-CceEEEEEeeccCCCceEEEeeEEEEeccc
Confidence 3468999999999999876 455777776544555678999999999994
No 355
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.38 E-value=0.06 Score=55.38 Aligned_cols=43 Identities=33% Similarity=0.394 Sum_probs=35.5
Q ss_pred HhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCC
Q 011610 173 KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSS 224 (481)
Q Consensus 173 ~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~ 224 (481)
++.|+++++++.|+.+.... -.|.+.+ ++.+..+++|+|||++
T Consensus 138 ke~gIe~~~~t~v~~~D~~~----K~l~~~~-----Ge~~kys~LilATGs~ 180 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADLAS----KTLVLGN-----GETLKYSKLIIATGSS 180 (478)
T ss_pred hhcCceEEEcceeEEeeccc----cEEEeCC-----CceeecceEEEeecCc
Confidence 45789999999999998764 3466665 7899999999999984
No 356
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.04 E-value=0.036 Score=62.04 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=33.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
.-..|.|||.||+||+||-+|-+ .|+.|+|+||. ++|
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk--~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERSDRVG 1821 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhh--cCcEEEEEEecCCcC
Confidence 45799999999999999999999 79999999954 666
No 357
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.53 E-value=0.35 Score=51.10 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=27.2
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEK 83 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~ 83 (481)
...|+|||+|..|+-+|..+.+ .|. +|+|+++
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~--~Ga~~Vtvv~r 314 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIR--LGAASVTCAYR 314 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCCeEEEEEe
Confidence 4689999999999999998887 564 6999985
No 358
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=94.22 E-value=0.1 Score=52.72 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=48.3
Q ss_pred HHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCc
Q 011610 169 LTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSI 238 (481)
Q Consensus 169 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i 238 (481)
.+.+++.||.++-|..|.++.+.. ....+++.+ +.++..|.||+|+|-.+. ..+++.-|++|
T Consensus 400 ~ekir~~GV~V~pna~v~sv~~~~--~nl~lkL~d-----G~~l~tD~vVvavG~ePN-~ela~~sgLei 461 (659)
T KOG1346|consen 400 IEKIRKGGVDVRPNAKVESVRKCC--KNLVLKLSD-----GSELRTDLVVVAVGEEPN-SELAEASGLEI 461 (659)
T ss_pred HHHHHhcCceeccchhhhhhhhhc--cceEEEecC-----CCeeeeeeEEEEecCCCc-hhhccccccee
Confidence 345677899999999999998764 556778887 789999999999997764 45666666655
No 359
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.08 E-value=0.21 Score=54.23 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=50.9
Q ss_pred HHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCChhHHHHHHHcCCCccc
Q 011610 167 CLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQQGHRLAAQLGHSIVD 240 (481)
Q Consensus 167 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g~g~~la~~~G~~i~~ 240 (481)
.|...+++.|++++++...+++... +....++..+ +..+.||.||.|+|-.+. ..+++..|+.+.+
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g~--~~~~~vr~~D-----G~~i~ad~VV~a~GIrPn-~ela~~aGlavnr 257 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVGE--DKVEGVRFAD-----GTEIPADLVVMAVGIRPN-DELAKEAGLAVNR 257 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhcC--cceeeEeecC-----CCcccceeEEEecccccc-cHhHHhcCcCcCC
Confidence 4555667789999998888887654 3566888887 789999999999996653 4678888887655
No 360
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.78 E-value=0.77 Score=49.70 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=28.6
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.+|+|||||..|+-.|..|++ .|.+|+++++.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~--~g~~Vtli~~~ 175 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTR--YASKVTVIVRE 175 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHc--cCCEEEEEEeC
Confidence 579999999999999999998 68899999853
No 361
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.76 E-value=0.52 Score=49.99 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=20.2
Q ss_pred CCeEEEECCchHHHHHHHHHhc
Q 011610 50 EELLVVVGGGAAGVYGAIRAKT 71 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~ 71 (481)
..+|+|||+|..|+-+|..|++
T Consensus 166 gk~VvVIGgGnvAlD~Ar~L~~ 187 (491)
T PLN02852 166 SDTAVVLGQGNVALDCARILLR 187 (491)
T ss_pred CCEEEEECCCHHHHHHHHHHHh
Confidence 3589999999999999999988
No 362
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.71 E-value=0.079 Score=47.17 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=28.5
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
+|.|||||..|.+.|..|++ .|.+|.|+.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CTEEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCEEEEEecc
Confidence 58999999999999999999 78999999965
No 363
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=93.66 E-value=0.75 Score=52.87 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=27.6
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (481)
.+|+|||||..|+-+|..+.+ .|.+|+++.+
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R--~Ga~Vtlv~r 478 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKR--LGGNVTIVYR 478 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCEEEEEEe
Confidence 589999999999999999998 6778888874
No 364
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.37 E-value=0.89 Score=52.12 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=27.3
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCC-CcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g-~~V~llE~~ 84 (481)
..+|+|||||..|+-+|..+.+. .| .+|+|+.+.
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~Rl-gGakeVTLVyRr 702 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRV-PGVEKVTVVYRR 702 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhc-CCCceEEEEEcc
Confidence 35899999999999999988874 24 478888853
No 365
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.99 E-value=0.24 Score=50.51 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=29.6
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
+.+|+|||+|-.|..+|..|++++ ..+|+|.+|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~-d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNG-DGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCC-CceEEEEeCC
Confidence 368999999999999999999942 2899999976
No 366
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.85 E-value=0.14 Score=46.67 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=26.4
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.|.|||+|..|...|..++. .|++|+++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECC
Confidence 48999999999999999999 79999999964
No 367
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=92.76 E-value=0.64 Score=47.59 Aligned_cols=43 Identities=30% Similarity=0.526 Sum_probs=33.5
Q ss_pred HhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610 173 KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 173 ~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
.+.++.++.+++|..+.... -.|.+.+ + ++..|++|+|||+.+
T Consensus 64 ~~~~i~~~~~~~v~~id~~~----~~v~~~~-----g-~~~yd~LvlatGa~~ 106 (415)
T COG0446 64 RATGIDVRTGTEVTSIDPEN----KVVLLDD-----G-EIEYDYLVLATGARP 106 (415)
T ss_pred HhhCCEEeeCCEEEEecCCC----CEEEECC-----C-cccccEEEEcCCCcc
Confidence 35689999999999997543 3455654 4 889999999999865
No 368
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.59 E-value=0.2 Score=53.09 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=29.5
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...|+|||+|.+|+.+|..|++ .|.+|+++|+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~ 48 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLE--LGARVTVVDDG 48 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 4589999999999999999998 78999999943
No 369
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.49 E-value=0.18 Score=44.23 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=28.5
Q ss_pred EEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610 53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (481)
Q Consensus 53 VvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (481)
|+|+|+|..|+..|..|++ .|.+|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc
Confidence 6899999999999999999 799999999654
No 370
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=92.45 E-value=0.14 Score=53.34 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=32.1
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (481)
+++||+|||+|++|+++|+.|++ .|.+|+|||++.
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~--~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAE--AGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHH--CCCcEEEEECCC
Confidence 46899999999999999999999 799999999764
No 371
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.45 E-value=0.18 Score=47.80 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=29.6
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
++++|||+|..|...|..|.+ .|.+|+++|++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~--~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE--EGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh--CCCceEEEEcC
Confidence 479999999999999999999 78999999965
No 372
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=92.38 E-value=0.38 Score=49.55 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=43.9
Q ss_pred eeecCCChHHHHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEe-ecccCceEEEEcCeEEEccCC
Q 011610 154 VFPVSDSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVE-KRTMNLVECIEADYLLIASGS 223 (481)
Q Consensus 154 ~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~-~~~~~~~~~i~ad~VIlAtG~ 223 (481)
.||...-...+.+.|.+.+++.|++|+++++|++|..++ +.+.+.+. + ++.+.||.||+|+-.
T Consensus 189 ~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~--~~~~~~~~~~-----g~~~~~d~vi~a~p~ 252 (419)
T TIGR03467 189 LLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANA--GGIRALVLSG-----GETLPADAVVLAVPP 252 (419)
T ss_pred eeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcC--CcceEEEecC-----CccccCCEEEEcCCH
Confidence 444333233344558888888899999999999999875 44443332 2 467899999998763
No 373
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=92.07 E-value=0.11 Score=49.41 Aligned_cols=33 Identities=33% Similarity=0.606 Sum_probs=27.7
Q ss_pred EEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610 53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (481)
Q Consensus 53 VvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (481)
.+|||||+||.+||-.|++..+..+|+|+-...
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 689999999999999999876777787776443
No 374
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.02 E-value=0.18 Score=53.16 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=28.6
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.|+|||.|++|+++|..|++ .|++|++.|+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~--~G~~V~~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA--QGWEVVVSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH--CCCEEEEECCC
Confidence 58999999999999999999 79999999954
No 375
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.81 E-value=0.23 Score=49.37 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=30.0
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.++|+|||+|+.|...|..|++ .|.+|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~--~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLAR--AGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence 4689999999999999999999 78999999974
No 376
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=91.78 E-value=0.52 Score=44.49 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=30.6
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL 87 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g 87 (481)
...|+|||.|-.|..++-.|+|.+- -+++|||.+.+.
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGi-g~itlID~D~v~ 66 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGI-GRITLIDMDDVC 66 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCC-CeEEEEeccccc
Confidence 4689999999999999999999532 379999977544
No 377
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=91.39 E-value=3 Score=48.04 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=27.5
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~ 84 (481)
..+|+|||||..|+-+|..+.+. +|. +|+++++.
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl-~Ga~kVtLVyRr 700 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRV-PGVEKVTVVYRR 700 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHh-CCCceEEEEEcc
Confidence 46899999999999999988873 364 78888853
No 378
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.14 E-value=0.22 Score=45.67 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=25.5
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
+.|.|||.|-.|+.+|..+|+ .|++|+.+|.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~--~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE--KGHQVIGVDID 32 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH--TTSEEEEE-S-
T ss_pred CEEEEECCCcchHHHHHHHHh--CCCEEEEEeCC
Confidence 479999999999999999999 79999999954
No 379
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=90.98 E-value=0.81 Score=49.13 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=28.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...+|+|||+|.+|+=.|..|++ ...+|.+.=|.
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~--~a~~v~~s~R~ 215 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSR--VAKKVYLSTRR 215 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTT--TSCCEEEECC-
T ss_pred CCCEEEEEeCCHhHHHHHHHHHH--hcCCeEEEEec
Confidence 34689999999999999999998 56788877754
No 380
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=90.06 E-value=0.42 Score=39.22 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=29.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
....|+|||||..|..-+..|.+ .|.+|+|+...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~--~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE--AGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC--CTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEECCc
Confidence 35689999999999999999999 78999999965
No 381
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=90.01 E-value=0.47 Score=47.32 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=30.5
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (481)
.+.|+|||+|..|.+.|..|++ .|.+|+++.++.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~--~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLAR--AGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHH--CCCeEEEEEeCC
Confidence 4689999999999999999999 789999999753
No 382
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=89.98 E-value=0.39 Score=49.11 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=29.3
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.+|+|||||+.|+-+|..|++ .|.+|+++|+.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~--~g~~Vtlv~~~ 173 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCR--AGKAVTLVDNA 173 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHh--cCCeEEEEecC
Confidence 579999999999999999998 78999999964
No 383
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.87 E-value=0.41 Score=47.62 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=29.4
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.+|.|||+|..|...|..+++ .|++|+++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~--~G~~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFAR--AGHEVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHH--CCCeeEEEeCC
Confidence 479999999999999999999 78999999965
No 384
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=89.86 E-value=0.4 Score=49.46 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=29.2
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.+|+|||||..|+-+|..|++ .|.+|+|+|+.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~ 176 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQ--RRCKVTVIELA 176 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecC
Confidence 579999999999999999998 68999999954
No 385
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=89.47 E-value=0.46 Score=46.96 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=28.1
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (481)
+|+|||+|..|...|..|++ .|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~--~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLE--AGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHH--CCCceEEEec
Confidence 69999999999999999999 6899999987
No 386
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=89.41 E-value=1.2 Score=45.48 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEEcCeEEEccCCCh
Q 011610 164 VIDCLLTEAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIEADYLLIASGSSQ 225 (481)
Q Consensus 164 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~ad~VIlAtG~~g 225 (481)
+.++-.+...+.|+++..++.|.++.. ..+.+.+. ++...+|....+|-|||..+
T Consensus 275 l~~yae~~f~~~~I~~~~~t~Vk~V~~----~~I~~~~~---~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 275 LVEYAENQFVRDGIDLDTGTMVKKVTE----KTIHAKTK---DGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred HHHHHHHHhhhccceeecccEEEeecC----cEEEEEcC---CCceeeecceEEEecCCCCC
Confidence 445555666778999999999999863 33444443 23346788899999999644
No 387
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=89.33 E-value=1.9 Score=43.41 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHHHHhCCCEEEcCceEEEEEecC
Q 011610 159 DSSSSVIDCLLTEAKHRGVVLQTGKVVTTASSDN 192 (481)
Q Consensus 159 ~~a~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~ 192 (481)
++..+++.-|...++++||++.++.+|.+|..+.
T Consensus 224 NQYeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~ 257 (587)
T COG4716 224 NQYESLVLPLITYLKSHGVDFTYDQKVEDIDVDD 257 (587)
T ss_pred chHHHHHHHHHHHHHHcCCceEeccEEeeeeecc
Confidence 4567788889999999999999999999998764
No 388
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=89.28 E-value=0.51 Score=47.54 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=29.9
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
+.+|.|||+|..|...|..|++ .|++|.+++++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~--~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAA--AGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHh--cCCcEEEEecH
Confidence 4679999999999999999999 78999999964
No 389
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.27 E-value=0.51 Score=46.54 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=28.4
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
+|+|||+|..|...|..|++ .|.+|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~--~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ--AGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence 69999999999999999998 68999999963
No 390
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.24 E-value=0.52 Score=43.28 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=27.9
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...+|+|||+|.+++-+|..|++ .+.+|+++=|.
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~--~g~~V~~~~R~ 199 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAK--AGKSVTLVTRS 199 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTT--TCSEEEEEESS
T ss_pred CCCcEEEEcChHHHHHHHHHHHh--hCCEEEEEecC
Confidence 34789999999999999999999 67899998754
No 391
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.01 E-value=0.65 Score=45.69 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=29.3
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
..|.|||+|..|...|..+++ .|++|+++|.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECC
Confidence 479999999999999999998 79999999954
No 392
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=88.87 E-value=0.6 Score=43.52 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=28.6
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (481)
...|+|||||.+|...+..|.+ .|.+|+|++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp 40 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLK--AGAQLRVIAE 40 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcC
Confidence 3589999999999999999998 7899999874
No 393
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.85 E-value=0.57 Score=46.06 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=29.1
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
..|.|||+|..|...|..+++ .|.+|+++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCC
Confidence 479999999999999999998 78999999954
No 394
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.61 E-value=0.59 Score=49.06 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=30.2
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...|+|||+|..|+.+|..|++ .|++|+++|+.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEK 37 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 4689999999999999999999 79999999964
No 395
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=88.50 E-value=0.5 Score=49.98 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=34.5
Q ss_pred ccccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhh
Q 011610 425 NTMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATL 476 (481)
Q Consensus 425 ~t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~ 476 (481)
++|+ +.+||+|++|++.. |.....+|...|+.|+.++.++...+.+
T Consensus 424 ~~~~-Ts~~gVfa~GD~~~-----g~~~~~~Av~~G~~AA~~i~~~L~g~~~ 469 (471)
T PRK12810 424 NAYQ-TSNPKVFAAGDMRR-----GQSLVVWAIAEGRQAARAIDAYLMGSTA 469 (471)
T ss_pred Cccc-CCCCCEEEccccCC-----CchhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3555 67899999995542 3335789999999999999888765443
No 396
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=88.49 E-value=0.55 Score=49.48 Aligned_cols=32 Identities=38% Similarity=0.457 Sum_probs=29.4
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.+|+|||+|+.|+-+|..+++ .|.+|+|+|+.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~--~g~~Vtli~~~ 198 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFAR--LGSEVTILQRS 198 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC
Confidence 589999999999999999998 68999999964
No 397
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.33 E-value=0.68 Score=48.90 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=29.5
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
++|+|||.|..|+..|..+++.+.|++|+.+|.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 5799999999999999999984446889999944
No 398
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.30 E-value=0.7 Score=45.53 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=29.3
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
..|.|||+|..|...|..+++ .|++|+++|++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 579999999999999999998 78999999964
No 399
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.18 E-value=0.67 Score=45.59 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=29.0
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
..|.|||+|..|...|..+++ .|++|+++|++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~--~G~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAV--SGFQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHh--CCCcEEEEeCC
Confidence 369999999999999999998 78999999965
No 400
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.85 E-value=0.76 Score=42.69 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=30.7
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP 86 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~ 86 (481)
...|+|||+|..|...|..|++ .|. +++|+|.+.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~--~Gvg~i~lvD~D~v 56 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLAR--AGIGKLILVDFDVV 56 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHH--cCCCEEEEECCCEE
Confidence 5789999999999999999999 677 6999997643
No 401
>PRK13984 putative oxidoreductase; Provisional
Probab=87.81 E-value=0.58 Score=51.21 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=32.1
Q ss_pred cccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610 426 TMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSN 472 (481)
Q Consensus 426 t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~ 472 (481)
+|+ +.+||+|++|++ . +|.++.+|...|+.|+.++.++..
T Consensus 563 ~~~-Ts~~gVfAaGD~---~---~~~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 563 YGQ-TSIPWLFAGGDI---V---HGPDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCc-cCCCCEEEecCc---C---CchHHHHHHHHHHHHHHHHHHHhc
Confidence 343 579999999944 3 456899999999999999987753
No 402
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=87.66 E-value=0.88 Score=40.50 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=28.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE 82 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE 82 (481)
....|+|||||..|..-|..|.+ .|.+|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~--~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKD--TGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEc
Confidence 35789999999999999999988 789999995
No 403
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.53 E-value=0.97 Score=45.20 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=29.1
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
..|.|||+|..|..-|..++. .|++|+++|..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA--HGLDVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence 579999999999999999998 79999999954
No 404
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=87.38 E-value=1.1 Score=39.18 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=29.0
Q ss_pred CeEEEECC-chHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGG-GAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGg-G~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
++|.|||+ |..|...|+.|....-..++.|+|.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN 35 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence 47999999 99999999999985445579999955
No 405
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.38 E-value=0.8 Score=45.57 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=28.0
Q ss_pred CeEEEECCchHHHHHHHHHhccCCC--CcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPK--LNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g--~~V~llE~~ 84 (481)
++|.|||+|..|.++|+.|++ .| ..|+++|++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~--~g~~~ev~l~D~~ 34 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLL--RGLASEIVLVDIN 34 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCCCEEEEEECC
Confidence 379999999999999999998 56 579999964
No 406
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=87.33 E-value=0.81 Score=41.11 Aligned_cols=33 Identities=30% Similarity=0.296 Sum_probs=28.1
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...|+|+|+|.+|..||..|.. -|++|+++|..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~--lGa~v~~~d~~ 52 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKG--LGAEVVVPDER 52 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH--TT-EEEEEESS
T ss_pred CeEEEEECCCHHHHHHHHHHhH--CCCEEEeccCC
Confidence 4799999999999999999998 68999999943
No 407
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=87.30 E-value=0.96 Score=42.05 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=28.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (481)
....|+|||||..|...|..|.+ .|.+|+|+++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcC
Confidence 34689999999999999999988 6889999863
No 408
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.18 E-value=0.8 Score=45.08 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=29.0
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
..|.|||+|..|...|..+++ .|++|+++|++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~--~G~~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR--TGYDVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh--cCCeEEEEeCC
Confidence 479999999999999999998 78999999964
No 409
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.06 E-value=0.95 Score=45.37 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=29.8
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.+.|.|||+|..|...|..|++ .|++|.++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~--~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAAS--KGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 3579999999999999999998 78999999974
No 410
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=87.03 E-value=2.3 Score=48.56 Aligned_cols=52 Identities=19% Similarity=0.168 Sum_probs=34.8
Q ss_pred HHHhCCCEEEcCceEEEEEecCCCCeEEEEEeecc----------cC---------------ceEEEEcCeEEEccC
Q 011610 171 EAKHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRT----------MN---------------LVECIEADYLLIASG 222 (481)
Q Consensus 171 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~----------~~---------------~~~~i~ad~VIlAtG 222 (481)
.+.+.||++.++....++..++++....+++.... .. ....+.||.||+|.|
T Consensus 649 ~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G 725 (1028)
T PRK06567 649 YALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIG 725 (1028)
T ss_pred HHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecc
Confidence 45677999999999988876541233344443211 01 235799999999999
No 411
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.91 E-value=0.84 Score=45.71 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=28.5
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
+|.|||+|..|...|..|++ .|.+|.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~--~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSS--KKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHH--CCCeEEEEecC
Confidence 69999999999999999998 68999999974
No 412
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=86.85 E-value=0.86 Score=45.29 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=27.4
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCC-cEEEEeC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEK 83 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~ 83 (481)
++|.|||+|..|...|+.++. .|. +|+++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~--~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE--KELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH--cCCCeEEEEeC
Confidence 479999999999999999998 454 8999995
No 413
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.74 E-value=0.5 Score=46.88 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=27.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE 82 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE 82 (481)
.-.||+|||||-+|.-||+-||- --..|+|+|
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAG--iv~hVtllE 384 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAG--IVEHVTLLE 384 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHh--hhheeeeee
Confidence 45799999999999999999986 234688888
No 414
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.56 E-value=1.4 Score=38.09 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=28.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCc-EEEEeCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLN-VVIIEKG 84 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~-V~llE~~ 84 (481)
....++|||+|-+|-.++..|++ .|.+ |+|+-|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~--~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA--LGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH--TTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 45799999999999999999998 5666 8887754
No 415
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.39 E-value=1.1 Score=44.45 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=29.3
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...|.|||+|..|...|..+++ .|++|+++|++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~--~g~~V~~~d~~ 36 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFAR--KGLQVVLIDVM 36 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence 3579999999999999999998 78999999954
No 416
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=86.37 E-value=0.75 Score=50.82 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=30.7
Q ss_pred ccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhh
Q 011610 429 SKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSN 472 (481)
Q Consensus 429 sk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~ 472 (481)
.+.+||+|++|++ . .|.....||...|+.|+.++.++..
T Consensus 614 ~Ts~~gVfAaGD~---~--~g~~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 614 QTSNPKIFAGGDA---V--RGADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred ccCCCCEEEcCCc---C--CCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 3678999999944 2 2434569999999999999988764
No 417
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=86.26 E-value=0.9 Score=48.27 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=28.6
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (481)
..+|+|+|+|++|+.|+..+.. .|.+|.++|.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~ 196 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDT 196 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeC
Confidence 5799999999999999998888 6889999994
No 418
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=86.20 E-value=0.96 Score=38.92 Aligned_cols=36 Identities=11% Similarity=0.279 Sum_probs=29.5
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKPL 87 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~g 87 (481)
+..|+|||+|..|...|..|++ .|. +++|+|.+.+-
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~--~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLAR--SGVGKITLVDDDIVE 38 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH--HTTSEEEEEESSBB-
T ss_pred CCEEEEECcCHHHHHHHHHHHH--hCCCceeecCCccee
Confidence 3689999999999999999999 465 69999976543
No 419
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.18 E-value=1 Score=43.79 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=30.5
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCC-CcEEEEeCCCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKGKP 86 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g-~~V~llE~~~~ 86 (481)
...|+|||+|..|..+|..|++ .| .+++|+|.+.+
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar--~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALAR--TGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--cCCCEEEEEeCCEe
Confidence 4689999999999999999999 56 58999996644
No 420
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.12 E-value=0.96 Score=46.26 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=29.2
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
..+|+|||+|.+|..+|..|.. .|.+|+++|+.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~--lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANG--LGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHH--CCCeEEEEECC
Confidence 4679999999999999999998 67899999964
No 421
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.89 E-value=1.2 Score=43.72 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=28.9
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.+|.|||+|..|...|..+++ .|++|+++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~--~g~~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAV--AGYDVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHH--CCCceEEEeCC
Confidence 479999999999999999998 78999999954
No 422
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=85.89 E-value=1.1 Score=44.66 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=29.2
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
++|.|||+|..|...|..|++ .|++|.+++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~--~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLAR--NGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence 479999999999999999998 78999999965
No 423
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=85.80 E-value=0.72 Score=45.17 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=30.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...+|+|||||.+|.-+|..+.. -|.+|+++|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g--lgA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG--LGADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhc--cCCeeEEEecC
Confidence 45799999999999999999888 68999999955
No 424
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=85.61 E-value=1.5 Score=44.00 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=29.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG 84 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~ 84 (481)
...+|+|||+|..|...|+.++. +++ +|+|+|.+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~--~gl~~i~LvDi~ 39 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVL--KNLGDVVLFDIV 39 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCC
Confidence 34689999999999999999988 564 89999943
No 425
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=85.57 E-value=1.1 Score=45.13 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=31.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~g 87 (481)
....|+|||+|..|..+|..|++ .|. +++|+|.+.+-
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~--aGvg~i~lvD~D~ve 60 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR--AGIGKLTIADRDYVE 60 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCccc
Confidence 34689999999999999999999 676 79999977543
No 426
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.52 E-value=1.3 Score=36.67 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=26.5
Q ss_pred EEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 53 VvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
|+|+|.|..|...|-.|.+ .+.+|+++|++
T Consensus 1 vvI~G~g~~~~~i~~~L~~--~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE--GGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH--TTSEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence 7999999999999999998 57799999965
No 427
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=85.43 E-value=0.98 Score=45.82 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=29.3
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
++|.|||.|-.|+..|..+++ .|++|+.+|.+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~--~GHeVv~vDid 32 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE--LGHEVVCVDID 32 (414)
T ss_pred CceEEECCchHHHHHHHHHHH--cCCeEEEEeCC
Confidence 479999999999999999999 78999999954
No 428
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.04 E-value=1.4 Score=43.71 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=30.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (481)
+.++|.|||+|..|...|..|++ .|++|.++++..
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~--~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASA--NGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHH--CCCEEEEEeCCC
Confidence 34679999999999999999998 789999999753
No 429
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=84.95 E-value=1.2 Score=48.99 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=32.1
Q ss_pred cccccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHh
Q 011610 426 TMESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDA 474 (481)
Q Consensus 426 t~esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~ 474 (481)
+|+ +.+||+|++| |+. .|.-.+.+|...|+.|+.++.++..++
T Consensus 595 ~~~-Ts~~gVfA~G---D~~--~g~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 595 PTQ-THLKKVFAGG---DAV--HGADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred Ccc-cCCCCEEEcC---CCC--CCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 343 4679999999 443 232245999999999999999887554
No 430
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.23 E-value=1.5 Score=44.27 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=31.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~g 87 (481)
....|+|||+|..|..+|..|++ .|. +++|+|.+.+-
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~--aGvg~i~lvD~D~Ve 60 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVR--AGVGKVTIVDRDYVE 60 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCccC
Confidence 35789999999999999999999 566 89999976543
No 431
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.08 E-value=1.6 Score=37.85 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=28.9
Q ss_pred eEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKPL 87 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~g 87 (481)
.|+|||+|..|...|..|++ .|. +++|+|.+.+-
T Consensus 1 ~VliiG~GglGs~ia~~L~~--~Gv~~i~ivD~d~v~ 35 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR--SGVGKITLIDFDTVE 35 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCcC
Confidence 48999999999999999999 565 69999976543
No 432
>PTZ00052 thioredoxin reductase; Provisional
Probab=84.07 E-value=1.4 Score=47.04 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=28.9
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.+++|||||+.|+-.|..|++ .|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNE--LGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC
Confidence 379999999999999999998 68999999864
No 433
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.01 E-value=1.8 Score=43.15 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=28.9
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
+.+|.|||+|..|.++|+.|+..+..-.++|+|.+
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~ 37 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV 37 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 46999999999999999999884334469999943
No 434
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=83.99 E-value=1.7 Score=42.85 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=29.0
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
..|.|||+|..|...|..+++ .|.+|+++|++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~--~G~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAA--AGMDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCC
Confidence 469999999999999999998 78999999954
No 435
>PRK13748 putative mercuric reductase; Provisional
Probab=83.62 E-value=1.4 Score=47.72 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=29.2
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.+|+|||||+.|+-.|..+++ .|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFAR--LGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCEEEEEecC
Confidence 579999999999999999998 68999999964
No 436
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=83.58 E-value=1.3 Score=46.62 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=28.8
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.+|+|||||..|+-+|..|++ .|.+|+++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~--~G~~Vtlv~~~ 304 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALR--LGAEVHCLYRR 304 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCEEEEEeec
Confidence 589999999999999999998 68889999853
No 437
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.58 E-value=1.4 Score=43.79 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=28.2
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (481)
+.|.|+|+|+.|...|+.|++ .|.+|+++=|++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~--~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAK--AGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHh--CCCeEEEEecHH
Confidence 479999999999999999999 676777777654
No 438
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=83.52 E-value=2.8 Score=43.60 Aligned_cols=47 Identities=28% Similarity=0.504 Sum_probs=33.8
Q ss_pred HhCCCEEEcCceEEEEEecCCCCeEEEEEeecccCceEEEE--cCeEEEccCCCh
Q 011610 173 KHRGVVLQTGKVVTTASSDNAGRKFLLKVEKRTMNLVECIE--ADYLLIASGSSQ 225 (481)
Q Consensus 173 ~~~Gv~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~i~--ad~VIlAtG~~g 225 (481)
.+.|++++.+++|+++..++ +.+.+.... .+..+. +|+||+|||+.+
T Consensus 55 ~~~gv~~~~~~~V~~id~~~--~~v~~~~~~----~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDER--QTVVVRNNK----TNETYEESYDYLILSPGASP 103 (427)
T ss_pred HhcCCeEEecCEEEEEECCC--CEEEEEECC----CCCEEecCCCEEEECCCCCC
Confidence 56799999999999998654 544444321 134567 999999999865
No 439
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=83.32 E-value=1.4 Score=46.92 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=32.6
Q ss_pred ccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHh
Q 011610 429 SKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDA 474 (481)
Q Consensus 429 sk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~ 474 (481)
.+.+||+|++|++. .|.....+|...|+.|+.++.++...+
T Consensus 441 ~Ts~~gVfAaGD~~-----~g~~~~~~Av~~G~~AA~~i~~~L~g~ 481 (485)
T TIGR01317 441 STSIPGVFAAGDCR-----RGQSLIVWAINEGRKAAAAVDRYLMGS 481 (485)
T ss_pred eECCCCEEEeeccC-----CCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56789999999543 244467999999999999998887543
No 440
>PRK04148 hypothetical protein; Provisional
Probab=83.12 E-value=1.1 Score=38.58 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=27.6
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
..+++||.| .|...|..|++ .|.+|+.+|.+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~--~G~~ViaIDi~ 48 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKE--SGFDVIVIDIN 48 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHH--CCCEEEEEECC
Confidence 579999999 99988989998 78999999954
No 441
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=83.09 E-value=1.5 Score=45.60 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=28.7
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
+|.|||.|..|+..|..|++ .|++|+++|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~--~G~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLAD--LGHEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHh--cCCeEEEEECC
Confidence 69999999999999999998 78999999954
No 442
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=83.07 E-value=1.6 Score=45.18 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=29.0
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...|+|+|+|+.|+.+|..++. .|.+|+++|.+
T Consensus 202 GktVvViG~G~IG~~va~~ak~--~Ga~ViV~d~d 234 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRG--QGARVIVTEVD 234 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECC
Confidence 4689999999999999999987 68899999854
No 443
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=82.83 E-value=1.9 Score=48.46 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=31.9
Q ss_pred ccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhH
Q 011610 429 SKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSND 473 (481)
Q Consensus 429 sk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~ 473 (481)
.+.+||+|++|++. .|.....+|...|+.|+.++.++...
T Consensus 712 ~Ts~~gVfA~GD~~-----~g~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 712 QSSIPGIYAGGDIV-----RGGATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CCCCCCEEEeCCcc-----CCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46789999999543 24456899999999999999887653
No 444
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.81 E-value=1.9 Score=39.06 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=28.3
Q ss_pred eEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP 86 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~ 86 (481)
.|+|||+|..|...|..|++ .|. +++|+|.+.+
T Consensus 1 ~VlViG~GglGs~ia~~La~--~Gvg~i~lvD~D~v 34 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR--SGVGNLKLVDFDVV 34 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCCEE
Confidence 48999999999999999999 566 5999997643
No 445
>PRK06223 malate dehydrogenase; Reviewed
Probab=82.72 E-value=1.7 Score=43.13 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=28.0
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~ 84 (481)
.+|.|||+|..|...|..++. .+. +|+|+|.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~--~~~~ev~L~D~~ 35 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL--KELGDVVLFDIV 35 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCeEEEEEECC
Confidence 689999999999999999998 444 89999953
No 446
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=82.68 E-value=1.9 Score=40.00 Aligned_cols=36 Identities=17% Similarity=0.379 Sum_probs=30.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP 86 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~ 86 (481)
....|+|||.|..|..+|..|++ .|. +++|+|.+.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~--~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG--AGVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH--cCCCeEEEecCCEE
Confidence 45789999999999999999999 565 7999997643
No 447
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=82.51 E-value=2 Score=40.66 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=28.3
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCC---cEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKL---NVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~---~V~llE~~ 84 (481)
...|+|+|+|.+|..+|..|.+ .|. +|.|+|+.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~--~G~~~~~i~ivdr~ 60 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLA--AGAKPENIVVVDSK 60 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHH--cCcCcceEEEEeCC
Confidence 4689999999999999999988 576 48888865
No 448
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=82.03 E-value=1.6 Score=40.86 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=31.4
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
......|.|||+|..|...|--.+. .|+.|.|+|++
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~--sg~~V~l~d~~ 43 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAAT--SGLNVWLVDAN 43 (298)
T ss_pred cccccceEEEcccccchhHHHHHHh--cCCceEEecCC
Confidence 3456789999999999999988888 79999999965
No 449
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=81.92 E-value=1.9 Score=42.33 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=27.4
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~ 84 (481)
...|+|||+|-+|.++|+.|++ .|. +|+|++|.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~--~G~~~I~I~nR~ 160 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLT--LGVERLTIFDVD 160 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCCEEEEECCC
Confidence 4689999999999999999998 465 57777753
No 450
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=81.64 E-value=2.1 Score=45.70 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=29.7
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...|.|||+|..|...|..+++ .|++|+++|+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~--aG~~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAAS--AGHQVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence 3579999999999999999998 79999999954
No 451
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=81.45 E-value=2.8 Score=46.74 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=30.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
....|.|||+|..|...|..++. .|++|+++|.+
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~ 345 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSAS--KGTPIVMKDIN 345 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHh--CCCeEEEEeCC
Confidence 34579999999999999999998 79999999954
No 452
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=81.39 E-value=2 Score=35.89 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=34.9
Q ss_pred chhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhcc
Q 011610 358 CLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKH 396 (481)
Q Consensus 358 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~ 396 (481)
.+-.+.+..+|+.+|+++++.+.+|+.+|+..|.+.+.+
T Consensus 24 GIG~~~a~~I~~~~gi~~~~r~~eLteeei~~ir~~i~~ 62 (121)
T COG0099 24 GIGRRRAKEICKKAGIDPDKRVGELTEEEIERLRDAIQN 62 (121)
T ss_pred cccHHHHHHHHHHcCCCHhHhhccCCHHHHHHHHHHHHh
Confidence 455788899999999999999999999999999988874
No 453
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=81.28 E-value=2.7 Score=37.81 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=29.0
Q ss_pred CCCeEEEECCch-HHHHHHHHHhccCCCCcEEEEeCC
Q 011610 49 SEELLVVVGGGA-AGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 49 ~~~DVvIIGgG~-aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...+|+|||+|- +|..+|..|.+ .|.+|+++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~--~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLN--RNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh--CCCEEEEEECC
Confidence 468999999996 69999999988 67889998864
No 454
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=81.11 E-value=2 Score=49.87 Aligned_cols=41 Identities=29% Similarity=0.322 Sum_probs=33.0
Q ss_pred cccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhH
Q 011610 428 ESKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSND 473 (481)
Q Consensus 428 esk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~ 473 (481)
..+.+||+|++| |+. +|...+.+|...|+.|+.++.++...
T Consensus 716 ~~Ts~pgVFAaG---Dv~--~G~~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 716 QSTNLPGVFAGG---DIV--TGGATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred cCCCCCCEEEec---CcC--CCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 356899999999 443 35557899999999999999888643
No 455
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=81.09 E-value=2.3 Score=37.95 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=27.6
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
+.+|.|||-|..|...|..|++ .|++|.++|+.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~--~g~~v~~~d~~ 33 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAK--AGYEVTVYDRS 33 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHH--TTTEEEEEESS
T ss_pred CCEEEEEchHHHHHHHHHHHHh--cCCeEEeeccc
Confidence 3589999999999999999998 79999999965
No 456
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=81.05 E-value=2.2 Score=40.90 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=30.2
Q ss_pred CCCeEEEECCchHHHHHHHHHhccC---------CCCcEEEEeCCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVA---------PKLNVVIIEKGKP 86 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~---------~g~~V~llE~~~~ 86 (481)
...+|+|||+|..|...+-.|++.+ .|.+++|+|.+.+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 4679999999999999999999842 1337888886654
No 457
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=81.01 E-value=2 Score=44.66 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=29.4
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
..|.|||.|..|+..|..|++ .|++|+++|++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~--~G~~V~~~D~~ 35 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS--RQKQVIGVDIN 35 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh--CCCEEEEEeCC
Confidence 579999999999999999999 78999999954
No 458
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=80.72 E-value=2.8 Score=42.99 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=55.5
Q ss_pred EEEECCchHHHHHHHHHhccCCCC-cEEEEeCCC-CCCceEEe-cCCceeeccCCCcchhHHhhccCCCChhchhhHHhc
Q 011610 53 LVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGK-PLSKVKIS-GGGRCNVTNGHCADKMILAGHYPRGHKEFRGSFFSL 129 (481)
Q Consensus 53 VvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~-~g~k~~~s-G~g~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (481)
|+|+|+|..|-.+|..|++. ... +|+|.+++. ...++... .+.+.........+...+.... ......+ ...-.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~-~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~-~~~dvVi-n~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR-GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELL-RGCDVVI-NCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT-TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHH-TTSSEEE-E-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcC-CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHH-hcCCEEE-ECCcc
Confidence 78999999999999999995 234 899999662 21111100 1233322222222222222211 1111111 11112
Q ss_pred CChHHHHHHHHhcCCcceeecCCeeeecCCChHHHHHHHHHHHHhCCCEEEcCc
Q 011610 130 HGPMDTMSWFSDHGVELKTEDDGRVFPVSDSSSSVIDCLLTEAKHRGVVLQTGK 183 (481)
Q Consensus 130 ~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~a~~~~~~l~~~~~~~Gv~i~~~~ 183 (481)
+....+.+..-+.|+.+... .........+.+.+++.|+.+..++
T Consensus 78 ~~~~~v~~~~i~~g~~yvD~---------~~~~~~~~~l~~~a~~~g~~~l~~~ 122 (386)
T PF03435_consen 78 FFGEPVARACIEAGVHYVDT---------SYVTEEMLALDEEAKEAGVTALPGC 122 (386)
T ss_dssp GGHHHHHHHHHHHT-EEEES---------S-HHHHHHHCHHHHHHTTSEEE-S-
T ss_pred chhHHHHHHHHHhCCCeecc---------chhHHHHHHHHHHHHhhCCEEEeCc
Confidence 22345556666666544331 0123445566677777777776654
No 459
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=80.55 E-value=3.1 Score=41.53 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=28.3
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCC--cEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKL--NVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~--~V~llE~~ 84 (481)
..+|.|||+|..|.++|+.|+. .+. +++|+|.+
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~--~~~~~el~L~D~~ 40 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN--QGIADELVIIDIN 40 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCC
Confidence 4599999999999999999988 455 79999953
No 460
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=80.49 E-value=2.3 Score=42.18 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=27.4
Q ss_pred eEEEECCchHHHHHHHHHhccCCC--CcEEEEeCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPK--LNVVIIEKG 84 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g--~~V~llE~~ 84 (481)
.|+|||+|.+|.+.|+.|+. .| .+++|+|++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~--~g~~~ei~l~D~~ 34 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN--QGIADELVLIDIN 34 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCC
Confidence 69999999999999999998 45 479999964
No 461
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.42 E-value=2.5 Score=47.25 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=29.9
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...|.|||+|..|...|..++. .|++|+++|.+
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~ 345 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSAS--KGVPVIMKDIN 345 (715)
T ss_pred cceEEEECCchhHHHHHHHHHh--CCCeEEEEeCC
Confidence 3579999999999999999998 79999999954
No 462
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=80.34 E-value=2.7 Score=39.38 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=30.3
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP 86 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~ 86 (481)
....|+|||+|..|..+|..|++ .|. +++|+|.+.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~--~Gvg~i~lvD~D~v 63 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALAR--SGVGNLKLVDFDVV 63 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCCEe
Confidence 35789999999999999999999 565 4999997644
No 463
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.31 E-value=2.2 Score=44.67 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=29.1
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
..|+|+|+|.+|+++|..|++ .|.+|++.|+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~--~G~~V~~~d~~ 37 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHK--LGANVTVNDGK 37 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence 469999999999999999999 79999999954
No 464
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=80.31 E-value=2.6 Score=44.94 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=29.1
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
..|.|||+|..|...|..+++ .|++|+++|+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~--~G~~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLL--AGIDVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence 479999999999999999998 79999999964
No 465
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=79.87 E-value=2.8 Score=44.74 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=29.3
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
..|.|||+|..|...|..+++ .|++|+++|+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~--aG~~V~l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQ--AGHTVLLYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence 579999999999999999998 79999999954
No 466
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=79.85 E-value=2.3 Score=45.12 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=29.1
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...|+|+|+|+.|++++..+.. .|.+|+++|..
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~--lGA~V~v~d~~ 196 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANS--LGAIVRAFDTR 196 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 4799999999999999999888 68889999943
No 467
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=79.69 E-value=3 Score=38.63 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=28.6
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (481)
...|+|+|.|-.|..+|..|.+ .|.+|++.|+
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~--~G~~Vvv~D~ 59 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLE--EGAKLIVADI 59 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcC
Confidence 4689999999999999999998 7899998874
No 468
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=79.67 E-value=2.8 Score=40.04 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=30.6
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGKPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~~g 87 (481)
....|+|||+|..|..+|..|++.+- -+++|+|.+.+-
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~ve 60 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFDTVS 60 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCccc
Confidence 35789999999999999999999432 378899976543
No 469
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=79.58 E-value=3.2 Score=41.75 Aligned_cols=37 Identities=16% Similarity=0.038 Sum_probs=32.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
..|||+|.|-|..=+..+..|+. .|.+|+.||++ ..|
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~--~~k~VlhiD~Nd~YG 42 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSW--DGKNVLHIDKNDYYG 42 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhh--cCceEEEEeCCCccC
Confidence 47999999999999999999998 78999999976 444
No 470
>PRK08328 hypothetical protein; Provisional
Probab=79.48 E-value=2.9 Score=39.67 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=29.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP 86 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~ 86 (481)
....|+|||+|..|..+|..|++ .|. +++|+|.+.+
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~--~Gvg~i~lvD~D~v 62 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAA--AGVGRILLIDEQTP 62 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCcc
Confidence 35689999999999999999999 453 6888886644
No 471
>PTZ00117 malate dehydrogenase; Provisional
Probab=79.46 E-value=3.3 Score=41.41 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=29.0
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCC-CcEEEEeCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPK-LNVVIIEKG 84 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g-~~V~llE~~ 84 (481)
...+|+|||+|..|.+.|+.++. .+ ..++|+|.+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~--~~~~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ--KNLGDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH--CCCCeEEEEECC
Confidence 45699999999999999999988 45 579999943
No 472
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=79.15 E-value=3.1 Score=41.24 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=28.1
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCC--CcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPK--LNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g--~~V~llE~~ 84 (481)
...|.|||+|..|.+.|..+++ .| .+|.++++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~--~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRR--LGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHh--cCCCcEEEEEECC
Confidence 3579999999999999999988 45 479999964
No 473
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=79.03 E-value=2.2 Score=42.21 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=26.2
Q ss_pred EEEECCchHHHHHHHHHhccCCCC-cEEEEeCC
Q 011610 53 LVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKG 84 (481)
Q Consensus 53 VvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~ 84 (481)
|.|||+|..|...|..++. .++ +|+++|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~--~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL--KELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHh--CCCcEEEEEeCC
Confidence 5799999999999999998 455 99999955
No 474
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=78.90 E-value=3.4 Score=46.25 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=29.9
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...|.|||+|..|...|..++. .|++|+++|.+
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~--~G~~V~l~d~~ 367 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVD--KGLKTVLKDAT 367 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHh--CCCcEEEecCC
Confidence 4579999999999999999998 79999999954
No 475
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=78.86 E-value=2.6 Score=41.16 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=28.3
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.|.|||.|..|.+.|..|++ .|.+|.+++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~--~g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS--LGHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH--CCCEEEEEECC
Confidence 69999999999999999998 68899999964
No 476
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=78.58 E-value=3.2 Score=38.97 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=27.1
Q ss_pred eEEEEC-CchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 52 LLVVVG-GGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 52 DVvIIG-gG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
+|.||| +|..|.+.|..|++ .|++|.+++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~--~G~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAK--AGNKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHh--CCCEEEEEEcC
Confidence 699997 79999999999998 68899888754
No 477
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.54 E-value=2.5 Score=44.91 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=28.5
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
..|+|+|.|.+|++++..|.+ .|.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~--~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTR--FGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence 479999999999999988887 78999999943
No 478
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=78.12 E-value=2.2 Score=36.96 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=25.6
Q ss_pred EEEECCchHHHHHHHHHhccCCCCcEEEEe-CC
Q 011610 53 LVVVGGGAAGVYGAIRAKTVAPKLNVVIIE-KG 84 (481)
Q Consensus 53 VvIIGgG~aGl~aA~~la~~~~g~~V~llE-~~ 84 (481)
++|+|+|+.+...|..++. -|++|+|+| +.
T Consensus 1 L~I~GaG~va~al~~la~~--lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAAL--LGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHH--CTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHh--CCCEEEEEcCCc
Confidence 5899999999999999888 699999999 54
No 479
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=77.98 E-value=1.3 Score=37.85 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=26.7
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE 82 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE 82 (481)
.....+|.|||+|-.|...|..|.+ .|+.|.-+.
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~--ag~~v~~v~ 40 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALAR--AGHEVVGVY 40 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHH--TTSEEEEES
T ss_pred CCCccEEEEECCCHHHHHHHHHHHH--CCCeEEEEE
Confidence 4457899999999999999999998 788887776
No 480
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=77.88 E-value=3.4 Score=39.63 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=30.4
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP 86 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~ 86 (481)
....|+|||+|..|..+|..|++ .|. +++|+|.+.+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~--~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAA--AGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCEE
Confidence 45799999999999999999999 454 7889997644
No 481
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=77.39 E-value=3.7 Score=38.74 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=27.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEe
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIE 82 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE 82 (481)
....|+|||||..++-=+..|.+ .|.+|+|+-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~--~gA~VtVVa 55 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLK--KGCYVYILS 55 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEc
Confidence 35689999999999998888888 688888885
No 482
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=77.21 E-value=2.5 Score=35.82 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhcc
Q 011610 358 CLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKH 396 (481)
Q Consensus 358 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~ 396 (481)
.+-.+++..+|+.+||++..++.+|+++++..|...+.+
T Consensus 24 GIG~~~A~~ic~~lgi~~~~~~~~Lt~~qi~~l~~~i~~ 62 (122)
T CHL00137 24 GIGLTSAKEILEKANIDPDIRTKDLTDEQISALREIIEE 62 (122)
T ss_pred cccHHHHHHHHHHcCcCcCcCcccCCHHHHHHHHHHHHH
Confidence 566788999999999999999999999999999998864
No 483
>PRK05179 rpsM 30S ribosomal protein S13; Validated
Probab=77.12 E-value=2.8 Score=35.53 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=35.4
Q ss_pred chhHHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHhcc
Q 011610 358 CLVKRFWKYILGREGLSGDTLWASVSNNSLISIARLLKH 396 (481)
Q Consensus 358 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~ 396 (481)
.+-.+++..+|+.+|+++..++.+|+++++..|...+.+
T Consensus 24 GIG~~~a~~i~~~lgi~~~~~~~~L~~~qi~~l~~~i~~ 62 (122)
T PRK05179 24 GIGRTRAKEILAAAGIDPDTRVKDLTDEELDKIREEIDK 62 (122)
T ss_pred cccHHHHHHHHHHhCcCcccccccCCHHHHHHHHHHHHh
Confidence 566788899999999999999999999999999998875
No 484
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=77.08 E-value=3.4 Score=42.58 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=26.5
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
+|.|||.|..|+..|..++. |++|+++|.+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~---G~~VigvD~d 31 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ---NHEVVALDIL 31 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh---CCcEEEEECC
Confidence 69999999999999987775 7999999954
No 485
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=76.90 E-value=3 Score=41.25 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=29.6
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...|.|||+|..|...|..++. .|++|+++|..
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~--~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFAL--AGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhh--cCCceEEEeCC
Confidence 3579999999999999999998 68999999954
No 486
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=76.88 E-value=3.9 Score=40.43 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=29.5
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
...|+|||.|.+|..+|..|++ .|.+|.++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~--~Ga~V~v~~r~ 184 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKA--LGANVTVGARK 184 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence 5799999999999999999998 68899999864
No 487
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=76.81 E-value=3.4 Score=43.22 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=28.6
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
+|+|+|+|..|...|..|.+ .|.+|+++|++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~--~g~~v~vid~~ 32 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSG--ENNDVTVIDTD 32 (453)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCcEEEEECC
Confidence 79999999999999999998 68999999964
No 488
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.47 E-value=3.8 Score=42.95 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=28.7
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (481)
..|+|+|.|.+|+++|..|++ .|.+|++.|.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~--~g~~v~~~d~ 36 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRK--NGAEVAAYDA 36 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCEEEEEeC
Confidence 579999999999999999998 7999999994
No 489
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=76.47 E-value=2.8 Score=46.30 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=33.7
Q ss_pred ccCCCCeEEEEEEeecccCcchHHHHHHHHHHHHHHHHHhHHhhHhhhh
Q 011610 429 SKIHPRLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTSIGKLSNDATLK 477 (481)
Q Consensus 429 sk~~~gLy~~GE~ldv~g~~GGynl~~A~~sG~~AG~~aa~~~~~~~~~ 477 (481)
.+.+||+|++|++ . .|......|...|+.|+.++.++...+.++
T Consensus 463 ~Ts~pgVfA~GDv---~--~g~~~v~~Ai~~G~~AA~~I~~~L~g~~~~ 506 (652)
T PRK12814 463 QTSVAGVFAGGDC---V--TGADIAINAVEQGKRAAHAIDLFLNGKPVT 506 (652)
T ss_pred cCCCCCEEEcCCc---C--CCchHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4568999999954 2 233456899999999999999888665543
No 490
>PTZ00325 malate dehydrogenase; Provisional
Probab=76.46 E-value=4.7 Score=40.31 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=30.1
Q ss_pred CCCCCeEEEECC-chHHHHHHHHHhccCCCCcEEEEeC
Q 011610 47 TSSEELLVVVGG-GAAGVYGAIRAKTVAPKLNVVIIEK 83 (481)
Q Consensus 47 ~~~~~DVvIIGg-G~aGl~aA~~la~~~~g~~V~llE~ 83 (481)
...+.+|+|||+ |..|...|+.|+.++...+++|+|.
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 335679999999 9999999999986433457999996
No 491
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=76.43 E-value=4.3 Score=37.18 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=27.1
Q ss_pred CCeEEEECC-chHHHHHHHHHhccCCCCcEEEEeC
Q 011610 50 EELLVVVGG-GAAGVYGAIRAKTVAPKLNVVIIEK 83 (481)
Q Consensus 50 ~~DVvIIGg-G~aGl~aA~~la~~~~g~~V~llE~ 83 (481)
...++|+|| |..|..+|..|++ .|.+|.++.|
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~--~g~~V~l~~R 60 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAR--EGARVVLVGR 60 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH--CCCEEEEEcC
Confidence 468999997 9999999999998 6778888764
No 492
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=76.18 E-value=6.2 Score=30.93 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=28.1
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (481)
..+++|+|.|.+|..+|..+.+. .+.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~-~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADE-GGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcC
Confidence 46899999999999999999883 2568888888
No 493
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.12 E-value=3 Score=42.48 Aligned_cols=39 Identities=18% Similarity=0.087 Sum_probs=33.1
Q ss_pred CCCCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC-CCC
Q 011610 47 TSSEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG-KPL 87 (481)
Q Consensus 47 ~~~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~-~~g 87 (481)
.+..+||||||-|..=...|.+.++ .|.+|+=+|.+ ..|
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSr--sG~sVLHlDsn~yYG 44 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSR--SGSSVLHLDSNEYYG 44 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhh--cCCceEeccCccccC
Confidence 4568999999999998888888888 79999999955 555
No 494
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=75.98 E-value=3.5 Score=39.16 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=30.3
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKPL 87 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~g 87 (481)
...|+|||.|..|..+|..|++ .|. +++|+|.+.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar--~GVg~i~LvD~D~V~ 47 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALAR--SGVGKLTLIDFDVVC 47 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCEEC
Confidence 4689999999999999999999 454 78999976543
No 495
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=75.96 E-value=2.4 Score=43.95 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=30.5
Q ss_pred CeEEEECCchHHHHHHHHHhccCCCCcEEEEeCCC
Q 011610 51 ELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKGK 85 (481)
Q Consensus 51 ~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~~ 85 (481)
+||+|||+|++|+++|+.+++ .|.+|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~--~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAE--AGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence 699999999999999999998 689999999754
No 496
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.71 E-value=3.6 Score=40.86 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=26.1
Q ss_pred eEEEECCchHHHHHHHHHhccCCCCcEEEEeC
Q 011610 52 LLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEK 83 (481)
Q Consensus 52 DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~ 83 (481)
+|.|||+|..|.++|+.|+.++-.-+++|+|.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 48999999999999999987322236999994
No 497
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=75.14 E-value=4.4 Score=43.87 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=30.7
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
.+-.++|+|.|..|...|..|.+ .|.+|+++|++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~--~g~~vvvId~d 449 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLA--AGIPLVVIETS 449 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHH--CCCCEEEEECC
Confidence 35689999999999999999998 68999999965
No 498
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=74.99 E-value=4.7 Score=37.28 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=30.0
Q ss_pred CCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011610 50 EELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP 86 (481)
Q Consensus 50 ~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~ 86 (481)
...|+|||+|..|...|..|++ .|. +++|+|.+.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~--~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVL--AGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEECCcC
Confidence 5799999999999999999999 565 5899997654
No 499
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=74.94 E-value=0.66 Score=45.82 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=31.5
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCCcEEEEeCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKLNVVIIEKG 84 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~~V~llE~~ 84 (481)
+++||+|||||.||++||+.|++ .|.++.|+-++
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~--~Gk~c~iv~~g 34 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQ--AGKRCAIVNRG 34 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHh--cCCcEEEEeCC
Confidence 57999999999999999999999 89999999965
No 500
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=74.81 E-value=4.5 Score=38.30 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=29.9
Q ss_pred CCCeEEEECCchHHHHHHHHHhccCCCC-cEEEEeCCCC
Q 011610 49 SEELLVVVGGGAAGVYGAIRAKTVAPKL-NVVIIEKGKP 86 (481)
Q Consensus 49 ~~~DVvIIGgG~aGl~aA~~la~~~~g~-~V~llE~~~~ 86 (481)
....|+|||+|..|...|..|++ .|. +++|+|.+.+
T Consensus 20 ~~~~VlivG~GglGs~va~~La~--~Gvg~i~lvD~D~v 56 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAA--AGVGKLGLVDDDVV 56 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCEE
Confidence 35789999999999999999999 454 7888886643
Done!