BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011612
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 358 NPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCF 415
N +++SI + R L E ++L+LD D++V+ LT LW D+ GA F
Sbjct: 75 NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACIDLF 132
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 358 NPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGA 410
N +++SI + R L E ++L+LD D++V+ LT LW D+ GA
Sbjct: 75 NIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA 127
>pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2BNE|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2V4Y|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|C Chain C, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|D Chain D, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|E Chain E, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|F Chain F, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
Length = 241
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 124 YTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQI 166
Y ++ K + +AL ++ ID SIL + +E+KE ++L Q+
Sbjct: 9 YKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQV 51
>pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp
pdb|2BND|B Chain B, The Structure Of E.Coli Ump Kinase In Complex With Udp
Length = 241
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 124 YTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQI 166
Y ++ K + +AL ++ ID SIL + +E+KE ++L Q+
Sbjct: 9 YKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQV 51
>pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp
pdb|2BNF|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Utp
Length = 241
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 124 YTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQI 166
Y ++ K + +AL ++ ID SIL + +E+KE ++L Q+
Sbjct: 9 YKRILLKLSGEALQGTEGFGIDASILDRXAQEIKELVELGIQV 51
>pdb|4AYN|A Chain A, Structure Of The C-Terminal Barrel Of Neisseria
Meningitidis Fhbp Variant 2
pdb|4AYN|B Chain B, Structure Of The C-Terminal Barrel Of Neisseria
Meningitidis Fhbp Variant 2
Length = 267
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 115 RIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKESF 174
R+ AD+ D +T P SLT+D+S+ + E++KL Q AE
Sbjct: 12 RVAADIGAGLADALTAPLDHKDKSLQSLTLDQSVRKN------EKLKLAAQ-GAEKTYGN 64
Query: 175 DNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAK-SIPKSLHCLAMRLMEERIAHPEK 233
+ L KLK+ + + + + + G +L + + I K H + L E+I +P+K
Sbjct: 65 GDSLNTGKLKNDKVSRFDFIRQIEVDGQLITLESGEFQIYKQDHSAVVALQIEKINNPDK 124
Query: 234 YN 235
+
Sbjct: 125 ID 126
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
Query: 62 GLGSMRRSVLALKSDPLKPRLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLS 121
GLG ++R PL+ L+ AD H ALA+ + + + KL + + + A S
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQT-EXEPKLADEEYRKALASDS 102
Query: 122 RN-----------YTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEA 170
RN Y + YQ L+++ T+ R FE + L + A+A
Sbjct: 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN--LGLVSLQXKKPAQA 160
Query: 171 KESFDNQLKIQKLKDTI 187
KE F+ L++ + + ++
Sbjct: 161 KEYFEKSLRLNRNQPSV 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,834,280
Number of Sequences: 62578
Number of extensions: 487598
Number of successful extensions: 1375
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1369
Number of HSP's gapped (non-prelim): 16
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)