Query 011612
Match_columns 481
No_of_seqs 289 out of 1117
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:18:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02523 galacturonosyltransfe 100.0 3E-120 6E-125 959.2 38.3 469 4-478 5-476 (559)
2 PLN02829 Probable galacturonos 100.0 6E-102 1E-106 826.3 31.6 375 82-478 181-556 (639)
3 PLN02910 polygalacturonate 4-a 100.0 9E-101 2E-105 816.9 30.3 379 81-478 194-574 (657)
4 PLN02742 Probable galacturonos 100.0 7E-100 2E-104 802.9 35.1 380 81-478 71-452 (534)
5 PLN02769 Probable galacturonos 100.0 1.8E-91 3.9E-96 749.7 29.5 360 82-472 179-539 (629)
6 PLN02870 Probable galacturonos 100.0 7.1E-89 1.5E-93 718.2 25.5 305 169-473 123-442 (533)
7 PLN02659 Probable galacturonos 100.0 1.2E-88 2.7E-93 716.6 25.8 315 145-472 114-442 (534)
8 PLN02718 Probable galacturonos 100.0 1.9E-87 4E-92 716.3 32.3 354 82-478 163-520 (603)
9 PLN02867 Probable galacturonos 100.0 2.2E-87 4.7E-92 709.1 28.6 321 153-473 112-444 (535)
10 cd06429 GT8_like_1 GT8_like_1 100.0 7.2E-42 1.6E-46 338.4 14.9 181 251-474 1-181 (257)
11 PRK15171 lipopolysaccharide 1, 100.0 1.2E-31 2.6E-36 274.2 15.1 188 248-479 23-217 (334)
12 cd00505 Glyco_transf_8 Members 100.0 5.9E-30 1.3E-34 248.9 13.3 184 251-479 1-189 (246)
13 cd04194 GT8_A4GalT_like A4GalT 100.0 1.8E-29 3.9E-34 244.6 15.3 186 251-479 1-188 (248)
14 cd06431 GT8_LARGE_C LARGE cata 100.0 9.9E-29 2.1E-33 247.4 14.0 184 252-479 4-197 (280)
15 cd06432 GT8_HUGT1_C_like The C 100.0 2E-28 4.3E-33 241.1 13.1 190 251-479 1-197 (248)
16 COG1442 RfaJ Lipopolysaccharid 100.0 2.8E-28 6E-33 248.7 14.5 185 250-479 2-191 (325)
17 PF01501 Glyco_transf_8: Glyco 99.9 2.6E-26 5.7E-31 217.0 13.0 192 252-479 1-194 (250)
18 cd06430 GT8_like_2 GT8_like_2 99.9 1.2E-25 2.6E-30 227.4 14.2 181 251-479 1-204 (304)
19 cd02537 GT8_Glycogenin Glycoge 99.5 2.1E-14 4.6E-19 140.2 10.0 144 257-473 8-154 (240)
20 PLN00176 galactinol synthase 99.4 2.1E-12 4.5E-17 133.0 12.5 102 365-479 100-215 (333)
21 cd06914 GT8_GNT1 GNT1 is a fun 99.0 1.5E-10 3.3E-15 116.7 4.9 81 361-470 76-156 (278)
22 KOG1879 UDP-glucose:glycoprote 98.6 8.5E-08 1.8E-12 110.5 9.0 180 247-465 1178-1361(1470)
23 COG5597 Alpha-N-acetylglucosam 94.8 0.0078 1.7E-07 62.0 -0.0 37 365-402 155-191 (368)
24 PF11051 Mannosyl_trans3: Mann 83.7 2.3 4.9E-05 42.9 5.9 36 367-402 79-114 (271)
25 PF03407 Nucleotid_trans: Nucl 68.3 5.4 0.00012 37.9 3.5 50 364-415 50-100 (212)
26 KOG1928 Alpha-1,4-N-acetylgluc 64.3 3.3 7E-05 44.4 1.2 33 364-400 227-259 (409)
27 PF03071 GNT-I: GNT-I family; 56.0 25 0.00054 38.5 6.1 116 251-400 96-213 (434)
28 KOG0994 Extracellular matrix g 50.0 2.1E+02 0.0045 35.5 12.5 20 142-161 1506-1525(1758)
29 cd02514 GT13_GLCNAC-TI GT13_GL 47.9 52 0.0011 34.7 6.8 112 253-399 5-118 (334)
30 PF04740 LXG: LXG domain of WX 46.8 2.6E+02 0.0056 26.5 13.2 75 82-172 48-124 (204)
31 PF10157 DUF2365: Uncharacteri 44.5 1.5E+02 0.0033 27.9 8.6 44 148-191 96-146 (149)
32 PF04488 Gly_transf_sug: Glyco 41.7 14 0.00031 31.5 1.3 35 361-399 62-97 (103)
33 PF04799 Fzo_mitofusin: fzo-li 38.4 1.3E+02 0.0029 29.0 7.4 46 149-197 118-163 (171)
34 PRK09039 hypothetical protein; 37.9 5.1E+02 0.011 27.3 13.3 18 1-18 1-21 (343)
35 cd07637 BAR_ACAP3 The Bin/Amph 36.7 4.2E+02 0.009 26.0 10.9 121 76-199 12-147 (200)
36 PF04765 DUF616: Protein of un 35.4 62 0.0013 33.9 5.0 47 367-413 141-189 (305)
37 PRK10132 hypothetical protein; 34.5 2.2E+02 0.0047 25.4 7.7 40 162-201 49-89 (108)
38 KOG2264 Exostosin EXT1L [Signa 34.2 3.7E+02 0.008 31.0 10.8 40 155-200 111-150 (907)
39 cd00761 Glyco_tranf_GTA_type G 31.3 2.9E+02 0.0063 22.5 7.9 34 264-299 13-46 (156)
40 PF04380 BMFP: Membrane fusoge 30.8 2.2E+02 0.0047 23.8 6.7 27 172-198 50-77 (79)
41 COG1344 FlgL Flagellin and rel 30.6 3.1E+02 0.0067 28.8 9.4 86 98-203 44-130 (360)
42 PRK04654 sec-independent trans 30.0 2.3E+02 0.005 28.4 7.7 48 144-191 20-67 (214)
43 PF05637 Glyco_transf_34: gala 30.0 34 0.00074 34.1 2.1 24 376-399 74-97 (239)
44 PF06103 DUF948: Bacterial pro 29.1 2E+02 0.0044 23.9 6.4 46 148-193 34-80 (90)
45 PF08535 KorB: KorB domain; I 27.7 3.2E+02 0.007 22.9 7.4 64 101-172 8-71 (93)
46 cd07603 BAR_ACAPs The Bin/Amph 26.3 5.2E+02 0.011 25.2 9.5 120 76-199 12-147 (200)
47 KOG4797 Transcriptional regula 25.5 2.4E+02 0.0052 25.6 6.3 36 174-209 63-98 (123)
48 KOG2391 Vacuolar sorting prote 25.4 3.3E+02 0.0072 29.2 8.3 48 159-206 226-274 (365)
49 PF03314 DUF273: Protein of un 25.0 48 0.001 33.2 2.0 24 371-394 34-57 (222)
50 PRK11166 chemotaxis regulator 24.5 7.2E+02 0.016 24.9 12.1 54 143-196 101-165 (214)
51 cd07606 BAR_SFC_plant The Bin/ 23.8 6.9E+02 0.015 24.5 9.8 121 76-199 11-150 (202)
52 TIGR02977 phageshock_pspA phag 23.5 5.6E+02 0.012 25.0 9.2 57 143-199 22-80 (219)
53 PF05478 Prominin: Prominin; 23.5 1.3E+03 0.027 27.3 14.7 80 141-224 219-302 (806)
54 PRK01919 tatB sec-independent 22.8 3.8E+02 0.0083 25.9 7.5 53 143-195 19-71 (169)
55 COG4585 Signal transduction hi 22.8 2E+02 0.0043 29.7 6.2 21 212-232 272-292 (365)
56 COG0836 {ManC} Mannose-1-phosp 22.6 37 0.00079 35.9 0.8 24 435-458 186-209 (333)
57 cd02515 Glyco_transf_6 Glycosy 21.7 1.7E+02 0.0036 30.4 5.2 24 373-396 118-141 (271)
58 PF12607 DUF3772: Protein of u 21.6 3E+02 0.0066 21.9 5.7 56 98-167 5-60 (64)
59 PRK15383 type III secretion sy 21.6 43 0.00094 34.3 1.0 23 380-402 220-242 (335)
60 PRK15382 non-LEE encoded effec 21.5 44 0.00095 34.3 1.0 23 380-402 212-234 (326)
61 KOG0809 SNARE protein TLG2/Syn 21.3 9.9E+02 0.021 25.3 11.1 69 141-211 94-171 (305)
62 PRK15384 type III secretion sy 21.3 43 0.00094 34.3 0.9 23 380-402 217-239 (336)
63 COG3850 NarQ Signal transducti 21.0 7E+02 0.015 28.5 10.1 31 92-125 366-396 (574)
64 PF14394 DUF4423: Domain of un 20.8 3E+02 0.0066 26.1 6.5 124 85-224 28-169 (171)
65 COG4575 ElaB Uncharacterized c 20.8 4.7E+02 0.01 23.5 7.1 70 121-200 14-85 (104)
66 PF10819 DUF2564: Protein of u 20.5 5.5E+02 0.012 22.0 8.6 51 143-198 25-78 (79)
No 1
>PLN02523 galacturonosyltransferase
Probab=100.00 E-value=2.7e-120 Score=959.21 Aligned_cols=469 Identities=78% Similarity=1.205 Sum_probs=435.2
Q ss_pred ccCCCCC---CCcccchhhhhhhhhhhhhhhhHhhhhhchhhccccCCCCcccCCCCCCcccCCcccceeeeecCCCCcc
Q 011612 4 HRTARTG---APVTGRFTFIMRLLASFITFAVFLFFTSSLLFTSRSHSRDLYSSGLNSGTYGLGSMRRSVLALKSDPLKP 80 (481)
Q Consensus 4 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (481)
+||+||| +++|++++ .|+++|++.. ++|+++.++++.+ ++++.+++..+...|.++++|++|||||||+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (559)
T PLN02523 5 HRGGRGGGGPGGLRSFFS--YRILASAIFL-FLFLATTSVLLNT---SPHPPHHDHLLPSSGNAYGQRTFLALKSDPLKT 78 (559)
T ss_pred hhcccCCCCCcccccchh--HHHHHHHHHH-HHHHHHHHHHHcC---CCCCcccccccccccccccccccccccCCcchh
Confidence 4666664 45787766 5776665543 5556667777766 445556777777788889999999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHhhhcchhhhhhhccCCCcCchhhHHHHHHHHHHHH
Q 011612 81 RLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERI 160 (481)
Q Consensus 81 ~~~~~~~~~~d~~~~~~ay~~~a~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (481)
|+|.|+||+.||++|+.||+++||||++|+|+|+|.|.+|++|+++|++||+++.+++++|.++++++++||+++++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (559)
T PLN02523 79 RLDQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFADLSRNFTDLISKPSYRALLSSDGSAIDEDVLRQFEKEVKERV 158 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhcCccccccccccCCcCchHHHhhcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCccccchhhhchHHHhcCCcCCCCCCCC
Q 011612 161 KLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKP 240 (481)
Q Consensus 161 ~~~~~~~~~~k~~~d~~~~~~kl~~~~~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~~rLt~ey~~~~~~~~~~~~~ 240 (481)
|.|+++|.+||+.|||+++++|||+|++++|||++++|+|++|++||||+|+|||||||+||||+|||++++++++.+++
T Consensus 159 k~~~~~~~~a~~~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~ 238 (559)
T PLN02523 159 KVARQMIAESKESFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSLHCLAMRLMEERIAHPEKYKDEGKP 238 (559)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHhHHHHHhChHhhhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887765667
Q ss_pred CCCCcCCCCceeEEEEeccccccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccc
Q 011612 241 TPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLN 320 (481)
Q Consensus 241 ~~~~l~Dp~~iHIai~sDNvLaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln 320 (481)
++++++||+++|||++|||++|++|+||||+.|+++|+++|||||||++|+.+|++||.++++++++|+|++|++|+|++
T Consensus 239 ~~~~l~dp~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf~~ln 318 (559)
T PLN02523 239 PPPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKFLN 318 (559)
T ss_pred cchhccCCCcceEEEecCcchhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehhhhcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHhhccccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHc
Q 011612 321 SSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWK 400 (481)
Q Consensus 321 ~~~~Pvl~ql~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~ 400 (481)
.+|+||++|+++++++.|||.++..+...+..++++++|+|+|+++|+|||||++||+++||||||+||||++||++||+
T Consensus 319 ~~~~pvlk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLseLw~ 398 (559)
T PLN02523 319 SSYVPVLRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWK 398 (559)
T ss_pred cccchHHHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHHHHh
Confidence 99999999999999999999976655555567889999999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEeccccchhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHccCccccC
Q 011612 401 IDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRLILIFN 478 (481)
Q Consensus 401 iDL~gkviAAVeDc~~~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~d~~ly~ 478 (481)
+||+|+++|||+||.+.+++|..+++|++|.++++||+++||||+|||||||++||++++|++++.|++.+.+..+|.
T Consensus 399 iDL~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~~w~~ln~~~~l~D 476 (559)
T PLN02523 399 IDMDGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHYWQNLNENRTLWK 476 (559)
T ss_pred CcCCCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHHHHHHhcccccccc
Confidence 999999999999997767889999999999998899999999999999999999999999999999998888766653
No 2
>PLN02829 Probable galacturonosyltransferase
Probab=100.00 E-value=6.5e-102 Score=826.31 Aligned_cols=375 Identities=47% Similarity=0.828 Sum_probs=346.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHhhhcchhhhhhhccCCCcCchhhHHHHHHHHHHHHH
Q 011612 82 LDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIK 161 (481)
Q Consensus 82 ~~~~~~~~~d~~~~~~ay~~~a~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (481)
.|+++|+++||+++||||+.+|+.-+ +...+| +|.+++++. +++|++. +.| .+|+++++++||
T Consensus 181 ~d~~v~~lkDql~~AkaY~~iak~~~--~~~l~~---el~~~i~e~------~r~l~~a--~~d----~~lp~~~~~~~~ 243 (639)
T PLN02829 181 PDARVRQLRDQLIKAKVYLSLPATKA--NPHFTR---ELRLRIKEV------QRVLGDA--SKD----SDLPKNANEKLK 243 (639)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccCC--cHHHHH---HHHHHHHHH------HHHHhhc--cCC----CCCChhHHHHHH
Confidence 89999999999999999998887744 344455 677777766 6666666 335 345668999999
Q ss_pred HHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCccccchhhhchHHHhcCCcCCCCCCCC
Q 011612 162 LTRQIIAEAKES-FDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKP 240 (481)
Q Consensus 162 ~~~~~~~~~k~~-~d~~~~~~kl~~~~~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~~rLt~ey~~~~~~~~~~~~~ 240 (481)
+|+++|++||++ |||+++++|||+|++++||++++||+|++||+||||+|+|||||||+||||+|||++++++++ .+
T Consensus 244 ~m~~~i~~ak~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~~~~~--~p 321 (639)
T PLN02829 244 AMEQTLAKGKQMQDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQ--FP 321 (639)
T ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCChhhcc--CC
Confidence 999999999995 999999999999999999999999999999999999999999999999999999999988765 56
Q ss_pred CCCCcCCCCceeEEEEeccccccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccc
Q 011612 241 TPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLN 320 (481)
Q Consensus 241 ~~~~l~Dp~~iHIai~sDNvLaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln 320 (481)
++++++||+++|||+||||+||++|||||++.|+++|+++|||||||++|+.+|++||.+|++++|+|||+++|+|+|+|
T Consensus 322 ~~~~l~dp~l~Hy~ifSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie~f~wln 401 (639)
T PLN02829 322 NQEKLEDPQLYHYALFSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLN 401 (639)
T ss_pred ChhhccCCccceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehhhccccc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHhhccccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHc
Q 011612 321 SSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWK 400 (481)
Q Consensus 321 ~~~~Pvl~ql~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~ 400 (481)
.+|+||++|+++..++.|||+....+ ...++++++|+|+|.++|+|||||++||+++||||||+||||++||++||+
T Consensus 402 ~~~~pvl~ql~~~~~~~~yf~~~~~~---~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~ 478 (639)
T PLN02829 402 SSYSPVLKQLGSQSMIDYYFRAHRAN---SDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWS 478 (639)
T ss_pred ccccHHHHHhhhhhhhhhhhhccccC---cccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHh
Confidence 99999999999999999999864332 246788999999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEeccccchhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHccCccccC
Q 011612 401 IDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRLILIFN 478 (481)
Q Consensus 401 iDL~gkviAAVeDc~~~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~d~~ly~ 478 (481)
+||+|+++|||+||...+++|..+++|++|.+.++|+++.||||+|||||||++||++++|++|++|++.+.++.+|.
T Consensus 479 iDL~gkviAAVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n~~r~L~d 556 (639)
T PLN02829 479 IDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDRQLWK 556 (639)
T ss_pred CCCCCceEEEeccchhhhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHccCCcccc
Confidence 999999999999999888899999999999998899999999999999999999999999999999999999888875
No 3
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=100.00 E-value=8.6e-101 Score=816.88 Aligned_cols=379 Identities=46% Similarity=0.797 Sum_probs=349.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHhhhcchhhhhhhccCCCcCchhhHHHHHHHHHHHH
Q 011612 81 RLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERI 160 (481)
Q Consensus 81 ~~~~~~~~~~d~~~~~~ay~~~a~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (481)
-.|+++|+++||+++||||..+|+.-+ +..++| +|++++++. +++|++. +.| .+|++.+.++|
T Consensus 194 ~~d~~vk~lkDQl~~AkaY~~iak~~~--~~~l~~---eL~~~i~e~------~r~ls~a--~~d----~dlp~~~~~k~ 256 (657)
T PLN02910 194 NSDSILKLMRDQIIMAKAYANIAKSNN--VTNLYV---SLMKQFREN------KRAIGEA--TSD----AELHSSALDQA 256 (657)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhccCC--cHHHHH---HHHHHHHHH------HHHHhhc--ccc----cccCchHHHHH
Confidence 369999999999999999988888744 344455 777777766 6666665 344 56677889999
Q ss_pred HHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCccccchhhhchHHHhcCCcCCCCCCC
Q 011612 161 KLTRQIIAEAKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGK 239 (481)
Q Consensus 161 ~~~~~~~~~~k~-~~d~~~~~~kl~~~~~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~~rLt~ey~~~~~~~~~~~~ 239 (481)
++|+++|.+||+ .|||+++++|||+|++++||++++||+|++||+||||+|+|||||||+||||+|||++++++++ .
T Consensus 257 ~~M~~~l~~ak~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRLt~Ey~~~~~~~~~--~ 334 (657)
T PLN02910 257 KAMGHVLSIAKDQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLLGFQNKD--Y 334 (657)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHhCchhhcc--C
Confidence 999999999999 5999999999999999999999999999999999999999999999999999999999988776 5
Q ss_pred CCCCCcCCCCceeEEEEeccccccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeecccccc
Q 011612 240 PTPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFL 319 (481)
Q Consensus 240 ~~~~~l~Dp~~iHIai~sDNvLaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~L 319 (481)
+++++++||+++|||+||||+||++|||||++.|+++|+++|||||||++|+.+|++||.+|++++|+|||+++|+|+|+
T Consensus 335 p~~~~l~dp~l~Hy~ifSDNVLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~~~A~V~V~nie~f~wl 414 (657)
T PLN02910 335 VNKKKLEDPSLYHYAIFSDNVLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAKATIQVENIDDFKWL 414 (657)
T ss_pred CChhhccCCcceeEEEEecceeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEeehhhcccc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHhhccccceeeeecc-ccccccccccccccCCCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHH
Q 011612 320 NSSYVPVLRQLESANLQRFYFEN-KLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGL 398 (481)
Q Consensus 320 n~~~~Pvl~ql~s~~~~~y~F~~-~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseL 398 (481)
|.+|+||++|++++.+++|||.. .......+..++++++|+|+|+++|+|||||++||+++||||||+||||++||++|
T Consensus 415 n~~~~pvl~qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseL 494 (657)
T PLN02910 415 NSSYCSVLRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPL 494 (657)
T ss_pred cccccHHHHHHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHH
Confidence 99999999999999999999984 33233334568899999999999999999999999999999999999999999999
Q ss_pred HccCCCCCEEEEEeccccchhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHccCccccC
Q 011612 399 WKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRLILIFN 478 (481)
Q Consensus 399 w~iDL~gkviAAVeDc~~~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~d~~ly~ 478 (481)
|++||+|+++|||+||..+++++..+++|++|.++++|+++.||||+|||||||++||++++|+.++.|++.+.+..+|.
T Consensus 495 w~iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe~ye~w~eln~~~~L~d 574 (657)
T PLN02910 495 WSIDMQGMVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDLNEDRTLWK 574 (657)
T ss_pred HhCCcCCceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHHHHHHHHHhcccccccc
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999998888774
No 4
>PLN02742 Probable galacturonosyltransferase
Probab=100.00 E-value=7e-100 Score=802.93 Aligned_cols=380 Identities=44% Similarity=0.787 Sum_probs=343.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHhhhcchhhhhhhccCCCcCchhhHHHHHHHHHHHH
Q 011612 81 RLDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERI 160 (481)
Q Consensus 81 ~~~~~~~~~~d~~~~~~ay~~~a~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (481)
-.|+++||++||+++||||+.+|+.-+ +...+| +|++++++. +++|++. +.+.+.+. +++++++|
T Consensus 71 ~~~~~~~~l~dql~~Ak~y~~ia~~~~--~~~l~~---el~~~i~e~------~~~l~~a--~~d~~~~~--~~~~~~~~ 135 (534)
T PLN02742 71 SATSFSRQLADQITLAKAYVVIAKEHN--NLQLAW---ELSAQIRNC------QLLLSKA--ATRGEPIT--VEEAEPII 135 (534)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhccCC--cHHHHH---HHHHHHHHH------HHHHHHh--hcccccCC--chhHHHHH
Confidence 468999999999999999999888733 233333 555555544 4455554 22222211 36889999
Q ss_pred HHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCccccchhhhchHHHhcCCcCCCC-CC
Q 011612 161 KLTRQIIAEAKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYND-EG 238 (481)
Q Consensus 161 ~~~~~~~~~~k~-~~d~~~~~~kl~~~~~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~~rLt~ey~~~~~~~~~-~~ 238 (481)
|.|+++|++||+ .|||+++++|||+|++++|||+++||+|++|++||||+|+|||||||+||||+|||+++++++. ++
T Consensus 136 ~~m~~~i~~ak~~~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~ 215 (534)
T PLN02742 136 RDLAALIYQAQDLHYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLGVRLTTEWFKNPKLQRKAEE 215 (534)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHhHHHHHhCchhhhcccc
Confidence 999999999999 6999999999999999999999999999999999999999999999999999999999988754 45
Q ss_pred CCCCCCcCCCCceeEEEEeccccccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccc
Q 011612 239 KPTPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKF 318 (481)
Q Consensus 239 ~~~~~~l~Dp~~iHIai~sDNvLaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~ 318 (481)
++++++++||+++|||+||||++|++||||||+.|+++|+++|||||||+.++.+|++||..|++++++|+|+++++|+|
T Consensus 216 ~~~~~~l~d~~l~Hy~ifSdNvlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~w 295 (534)
T PLN02742 216 KRNSPRLVDNNLYHFCVFSDNILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSW 295 (534)
T ss_pred ccccccccCCCcceEEEEeccchhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHhhccccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHH
Q 011612 319 LNSSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGL 398 (481)
Q Consensus 319 Ln~~~~Pvl~ql~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseL 398 (481)
++.+|+||++|+++++++.|||.+..++ +.++.++++|+|+|+++|+|||||++||+++||||||+|+||++||++|
T Consensus 296 l~~~~~pvl~ql~~~~~~~~yf~~~~~~---~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL 372 (534)
T PLN02742 296 LNASYVPVLKQLQDSDTQSYYFSGSQDD---GKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPL 372 (534)
T ss_pred cccccchHHHHhhhhhhhhhhccccccc---ccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHH
Confidence 9999999999999999999999876422 3356788999999999999999999999999999999999999999999
Q ss_pred HccCCCCCEEEEEeccccchhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHccCccccC
Q 011612 399 WKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRLILIFN 478 (481)
Q Consensus 399 w~iDL~gkviAAVeDc~~~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~d~~ly~ 478 (481)
|++||+|+++|||+||...+++|.+++||++|.++++|+++.||||+|||||||++||++++|+.++.|++.|.++.+|.
T Consensus 373 ~~~DL~~~viaAVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~~w~e~n~~~~l~d 452 (534)
T PLN02742 373 FSIDLHGNVNGAVETCLETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYHYWQEQNVDRTLWK 452 (534)
T ss_pred hcCCCCCCEEEEeCchhhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHHHHHHhcccccccc
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999998887764
No 5
>PLN02769 Probable galacturonosyltransferase
Probab=100.00 E-value=1.8e-91 Score=749.73 Aligned_cols=360 Identities=35% Similarity=0.537 Sum_probs=320.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHhhhcchhhhhhhccCCCcCchhhHHHHHHHHHHHHH
Q 011612 82 LDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIK 161 (481)
Q Consensus 82 ~~~~~~~~~d~~~~~~ay~~~a~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (481)
.|+++||++||+++||||++...+++- +..++| +|++++++. +++|++. +.| .++++.+.++|+
T Consensus 179 ~d~~~~~l~Dql~~Ak~y~~~iak~~~-~~~l~~---el~~~i~e~------~~~l~~~--~~d----~dlp~~~~~~~~ 242 (629)
T PLN02769 179 KDSIVKRLKDQLFVARAYYPSIAKLPG-QEKLTR---ELKQNIQEH------ERVLSES--ITD----ADLPPFIQKKLE 242 (629)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccCC-cHHHHH---HHHHHHHHH------HHHHhhc--ccc----ccCChhHHHHHH
Confidence 799999999999999999854444432 344555 788888877 7777776 445 445667888999
Q ss_pred HHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCccccchhhhchHHHhcCCcCCCCCCCC
Q 011612 162 LTRQIIAEAKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKP 240 (481)
Q Consensus 162 ~~~~~~~~~k~-~~d~~~~~~kl~~~~~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~~rLt~ey~~~~~~~~~~~~~ 240 (481)
+|+++|++||+ .|||.++++|||+|++++|||+++++||++||+||||+|+|||||||+||||+|||++++++++ .+
T Consensus 243 ~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~--~~ 320 (629)
T PLN02769 243 KMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKSHHCLSMRLTVEYFKSSSLDME--DS 320 (629)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHHhCchhhcc--CC
Confidence 99999999999 5999999999999999999999999999999999999999999999999999999999988876 56
Q ss_pred CCCCcCCCCceeEEEEeccccccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccc
Q 011612 241 TPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLN 320 (481)
Q Consensus 241 ~~~~l~Dp~~iHIai~sDNvLaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln 320 (481)
++++++||+++|||+||||++|++||||||+.|+++|+++|||||||+.++.+|++||.+|++++|+|||+++|+|+|.+
T Consensus 321 ~~~~l~d~~l~Hy~ifSdNvlAasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v~n~e~~~~~~ 400 (629)
T PLN02769 321 NSEKFSDPSLRHYVIFSKNVLAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIEDLILKD 400 (629)
T ss_pred chhhccCCccceEEEEeccceeeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhcCCCccceEEEeeeeeeeecc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred cccchhHHhhccccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHc
Q 011612 321 SSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWK 400 (481)
Q Consensus 321 ~~~~Pvl~ql~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~ 400 (481)
. .+|+++|+++.+...++|.+.. ....+.++|+|+|+++|+|||||++||+++||||||+|+||++||++||+
T Consensus 401 ~-~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~ 473 (629)
T PLN02769 401 L-DKFALKQLSLPEEFRVSFRSVD------NPSSKQMRTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWN 473 (629)
T ss_pred c-chHHHHhhccchhhhhhhccCC------CCchhccCcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhc
Confidence 4 5899999999888777776541 12345678999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEeccccchhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHcc
Q 011612 401 IDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVR 472 (481)
Q Consensus 401 iDL~gkviAAVeDc~~~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~ 472 (481)
+||+|+++|||+||...+..+..|++ ..+|+++.||||+|||||||++||++++++++++|++.+.
T Consensus 474 iDL~gkviAAVedc~~rl~~~~~yl~------~~~F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~ 539 (629)
T PLN02769 474 LDMGGKVNGAVQFCGVRLGQLKNYLG------DTNFDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFS 539 (629)
T ss_pred CCCCCCeEEEehhhhhhhhhhhhhhc------ccCCCccccccccCeeEeeHHHHHHhCHHHHHHHHHHHhh
Confidence 99999999999999765555544443 3468899999999999999999999999999999987753
No 6
>PLN02870 Probable galacturonosyltransferase
Probab=100.00 E-value=7.1e-89 Score=718.25 Aligned_cols=305 Identities=42% Similarity=0.742 Sum_probs=280.3
Q ss_pred HHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCccccchhhhchHHHhcCCcCCCCC-CCCCCCCcC
Q 011612 169 EAKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDE-GKPTPAEFE 246 (481)
Q Consensus 169 ~~k~-~~d~~~~~~kl~~~~~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~~rLt~ey~~~~~~~~~~-~~~~~~~l~ 246 (481)
+||+ +|||.++++|||+|++++|||++++|+|++|++||||+|+|||||||+||||+|||++++++++. ++++.++++
T Consensus 123 ~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~e~~~~l~ 202 (533)
T PLN02870 123 DMKNNHYDAKTFAFVLRAMMEKFERELRESKFAELMNKHFAASSIPKGIHCLSLRLTDEYSSNAHARKQLPSPELLPVLS 202 (533)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHHhCchhhhcCCccccccccc
Confidence 4554 79999999999999999999999999999999999999999999999999999999999887773 345677999
Q ss_pred CCCceeEEEEeccccccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccccccchh
Q 011612 247 DPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPV 326 (481)
Q Consensus 247 Dp~~iHIai~sDNvLaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~~Pv 326 (481)
||+++|||++|||+||+||||||++.|+++|+++|||||||++|+.+|++||.+|++++|+|||+++|+|+||+.+|+||
T Consensus 203 dp~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VFHvvTD~~n~~aM~~WF~~n~~~~a~v~V~~~e~f~wl~~~~~pv 282 (533)
T PLN02870 203 DNSYHHFVLSTDNILAASVVVSSTVQSSLKPEKIVFHVITDKKTYAGMHSWFALNSVSPAIVEVKGVHQFDWLTRENVPV 282 (533)
T ss_pred CCcceeEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEEehhhccccccccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccceeeeec-cccc-------cccccccccccCCCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHH
Q 011612 327 LRQLESANLQRFYFE-NKLE-------NATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGL 398 (481)
Q Consensus 327 l~ql~s~~~~~y~F~-~~~~-------~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseL 398 (481)
++|+|+++++.++|. +... ++.....++++++|+|+|+++|+|||||++||+++||||||+||||++||++|
T Consensus 283 l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseL 362 (533)
T PLN02870 283 LEAVESHNGIRNYYHGNHIAGANLSETTPRTFASKLQARSPKYISLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPL 362 (533)
T ss_pred HHHHhhhHHHHHHhhcccccccccccccchhhhcccccCCccccCHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHH
Confidence 999999998655554 3221 11112357889999999999999999999999999999999999999999999
Q ss_pred HccCCCCCEEEEEeccccc-----hhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHccC
Q 011612 399 WKIDMDGKVNGAVETCFGS-----FHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRL 473 (481)
Q Consensus 399 w~iDL~gkviAAVeDc~~~-----~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~d 473 (481)
|++||+|+++|||+||... .+++..|+||++|.+..+|++++||||+|||||||++||++++|+++++|++++..
T Consensus 363 w~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i~~~fd~~~cyfNSGVlLINL~~WRe~nITek~~~~l~~n~~ 442 (533)
T PLN02870 363 WDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKNLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLK 442 (533)
T ss_pred hhCCCCCceEEEEccccccchhhhhhhhhhhcccccchhhcccCcccceeeccchhccHHHHHHcChHHHHHHHHHhhhh
Confidence 9999999999999999642 35777899999999999999999999999999999999999999999999988753
No 7
>PLN02659 Probable galacturonosyltransferase
Probab=100.00 E-value=1.2e-88 Score=716.55 Aligned_cols=315 Identities=41% Similarity=0.705 Sum_probs=289.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCccccchhhhch
Q 011612 145 DESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLM 224 (481)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~d~~~~~~kl~~~~~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~~rLt 224 (481)
-|+++.+|..+|+.. +|||.++++|||+|++++||+++++|+|+.++.||||+|+|||||||+||||
T Consensus 114 ~~~~~~~~~~~~~~~-------------~~d~~~~~~klr~~l~~~E~~~~~~k~~~~~~~~laa~t~PK~lHCL~mrLt 180 (534)
T PLN02659 114 IPQTLEEFMDEVKNS-------------RSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLA 180 (534)
T ss_pred cchHHHHHHHHHHhc-------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhH
Confidence 366777777766654 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcCCCC-CCCCCCCCcCCCCceeEEEEeccccccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCC
Q 011612 225 EERIAHPEKYND-EGKPTPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDY 303 (481)
Q Consensus 225 ~ey~~~~~~~~~-~~~~~~~~l~Dp~~iHIai~sDNvLaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~ 303 (481)
+|||++++++++ +++++.++++||+++|||++|||+||++|||||++.|+++|+++|||||||++|+.+|++||.+|++
T Consensus 181 ~ey~~~~~~~~~~~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvnStv~~a~~p~~~VFHivTD~~ny~aM~~WF~~n~~ 260 (534)
T PLN02659 181 NEHSTNAAARLQLPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFVLHIITDRKTYSPMQAWFSLHPL 260 (534)
T ss_pred HHHHhCchhhhccCCcccccccCCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHhhCCC
Confidence 999999988877 3356677999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeeccccccccccchhHHhhccccceeeeeccc--------cccccccccccccCCCCCccHhhhHHhhhhhh
Q 011612 304 NGAHIEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENK--------LENATKDTTNMKFRNPKYLSILNHLRFYLPEM 375 (481)
Q Consensus 304 ~~a~I~V~~ie~f~~Ln~~~~Pvl~ql~s~~~~~y~F~~~--------~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeI 375 (481)
++|+|||+++|+|+|||.+|+||++|++++.+..++|+.+ .+++...+.++++++|+|+|+++|+|||||++
T Consensus 261 ~~a~v~V~~~e~f~wl~~~~~pvl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~~nY~RL~IPeL 340 (534)
T PLN02659 261 SPAIIEVKALHHFDWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAAKLQALSPKYNSVMNHIRIHLPEL 340 (534)
T ss_pred ccceEEEEeehhcccccccccHHHHHHhhhhhhhhhhcccccccccccccCccccccccccCCccceeHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998988732 22333334577889999999999999999999
Q ss_pred cCCCCeEEEEEcceeeccCchHHHccCCCCCEEEEEeccccc--h---hhhhhccCCCchhhhhhcCCCCcccccchhhc
Q 011612 376 YPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGS--F---HRYAQYMNFSHPLIKAKFNPKACAWAYGMNFF 450 (481)
Q Consensus 376 lP~ldKVLYLD~DvIV~~DLseLw~iDL~gkviAAVeDc~~~--~---~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLi 450 (481)
||+++||||||+||||++||++||++||+|+++|||+||... + +++..+++|++|.+.++|+++.||||+|||||
T Consensus 341 LP~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i~~yFn~~~cYfNsGVlLI 420 (534)
T PLN02659 341 FPSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAYGMNIF 420 (534)
T ss_pred hhhcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhhhhccCccccceecceeEe
Confidence 999999999999999999999999999999999999999642 2 56788999999999999999999999999999
Q ss_pred cHHHHHhhchHHHHHHHHHHcc
Q 011612 451 DLDAWRREKCTEEYHYWQNLVR 472 (481)
Q Consensus 451 DL~kWR~~nit~k~~~~~~~n~ 472 (481)
||++||++++|+++++|++++.
T Consensus 421 NLk~WRe~nITek~l~~l~~n~ 442 (534)
T PLN02659 421 DLEAWRKTNISSTYHHWLEENL 442 (534)
T ss_pred eHHHHHhcChHHHHHHHHHhcc
Confidence 9999999999999999999875
No 8
>PLN02718 Probable galacturonosyltransferase
Probab=100.00 E-value=1.9e-87 Score=716.25 Aligned_cols=354 Identities=41% Similarity=0.695 Sum_probs=321.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHhhhcchhhhhhhccCCCcCchhhHHHHHHHHHHHHH
Q 011612 82 LDQIRKQADDHRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIK 161 (481)
Q Consensus 82 ~~~~~~~~~d~~~~~~ay~~~a~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (481)
.|+++||++||+++||||+.+|+.-+ +...+| +|.+++++. +++|++. +.|.+ +++++.++|+
T Consensus 163 ~d~~v~~~~dql~~ak~y~~~a~~~~--~~~~~~---el~~~i~e~------~~~l~~~--~~d~~----lp~~~~~~~~ 225 (603)
T PLN02718 163 TDEKVKEIRDKIIQAKAYLNLAPPGS--NSQLVK---ELRLRTKEL------ERAVGDA--TKDKD----LSKSALQRMK 225 (603)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCC--cHHHHH---HHHHHHHHH------HHHHhcc--cCCCC----CCHhHHHHHH
Confidence 79999999999999999998887744 344555 777777766 6677666 45533 4668888999
Q ss_pred HHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCccccchhhhchHHHhcCCcCCCCCCCC
Q 011612 162 LTRQIIAEAKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKP 240 (481)
Q Consensus 162 ~~~~~~~~~k~-~~d~~~~~~kl~~~~~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~~rLt~ey~~~~~~~~~~~~~ 240 (481)
+|+++|++||+ .|||.++++|||+|++++||++++||+|++|++||||+|+|||||||+||||+|||++++++++ .+
T Consensus 226 ~m~~~~~~a~~~~~d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~PK~lhCL~~rLt~ey~~~~~~~~~--~~ 303 (603)
T PLN02718 226 SMEVTLYKASRVFPNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQ--LP 303 (603)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHhhCChhhcc--CC
Confidence 99999999999 5999999999999999999999999999999999999999999999999999999999987776 56
Q ss_pred CCCCcCCCCceeEEEEeccccccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccc
Q 011612 241 TPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLN 320 (481)
Q Consensus 241 ~~~~l~Dp~~iHIai~sDNvLaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln 320 (481)
++++++||+++|||+++||+++++|+|+|++.|+++|++++||||||++++++|+.||.+++..+++|+|+++++|.|++
T Consensus 304 ~~~~l~d~~~~Hia~~sDNvlaasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp 383 (603)
T PLN02718 304 NQQRYNDPDLYHYVVFSDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLP 383 (603)
T ss_pred ChhhccCCcceeEEEEcCCceeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhcccc
Confidence 78899999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred cccchhHHhhccccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHc
Q 011612 321 SSYVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWK 400 (481)
Q Consensus 321 ~~~~Pvl~ql~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~ 400 (481)
.+|+++++++++ .+|+|+|+++|+||+||++||+++||||||+|+||++||++||+
T Consensus 384 ~~~~~~lk~l~s------------------------~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~ 439 (603)
T PLN02718 384 ADYNSLLMKQNS------------------------HDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWS 439 (603)
T ss_pred ccchhhhhhccc------------------------cccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhc
Confidence 888888765433 34679999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEecccc---chhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHccCcccc
Q 011612 401 IDMDGKVNGAVETCFG---SFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRLILIF 477 (481)
Q Consensus 401 iDL~gkviAAVeDc~~---~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~d~~ly 477 (481)
+||+|+++|||+||.. .+.++..+++|++|.+.++|+++.||||+|||||||++||++++|+++++|++++.++.+|
T Consensus 440 iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~~~~l~ 519 (603)
T PLN02718 440 LDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPWVAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGVKRPLW 519 (603)
T ss_pred CCCCCcEEEEeccccccccchhhhhhhhhccchhhhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHhccCcccc
Confidence 9999999999999975 3456677899999999889999999999999999999999999999999999999887665
Q ss_pred C
Q 011612 478 N 478 (481)
Q Consensus 478 ~ 478 (481)
.
T Consensus 520 d 520 (603)
T PLN02718 520 K 520 (603)
T ss_pred C
Confidence 3
No 9
>PLN02867 Probable galacturonosyltransferase
Probab=100.00 E-value=2.2e-87 Score=709.09 Aligned_cols=321 Identities=37% Similarity=0.646 Sum_probs=288.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCccccchhhhchHHHhcCC
Q 011612 153 EKEVKERIKLTRQIIAEAKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSLHCLAMRLMEERIAHP 231 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~k~-~~d~~~~~~kl~~~~~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~~rLt~ey~~~~ 231 (481)
++.++++.+.|++++.++|. +|||.++++|||+|++++||+++++|+|++|++||||+|+|||||||+||||+|||+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~ 191 (535)
T PLN02867 112 GRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIPKSLHCLCLKLAEEYAVNA 191 (535)
T ss_pred CcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHhCc
Confidence 34556788889999999997 79999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-CCCCCCCcCCCCceeEEEEeccccccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEE
Q 011612 232 EKYNDE-GKPTPAEFEDPKLYHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEV 310 (481)
Q Consensus 232 ~~~~~~-~~~~~~~l~Dp~~iHIai~sDNvLaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V 310 (481)
+++++. +++..++++||+++|||++|||+||++|||||++.|+++|+++|||||||++|+.+|++||.+|++++|+|||
T Consensus 192 ~~~~~~~~~~~~~~l~d~~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VfHvvTD~~ny~aM~~WF~~n~~~~a~v~V 271 (535)
T PLN02867 192 MARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANPEKLVFHIVTDKKTYTPMHAWFAINSIKSAVVEV 271 (535)
T ss_pred hhhccCCChhhhhhccCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEE
Confidence 887773 3456779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccccchhHHhhcccccee-eeecccccc----ccccccccccCCCCCccHhhhHHhhhhhhcCCCCeEEEE
Q 011612 311 KAVEDYKFLNSSYVPVLRQLESANLQR-FYFENKLEN----ATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFL 385 (481)
Q Consensus 311 ~~ie~f~~Ln~~~~Pvl~ql~s~~~~~-y~F~~~~~~----~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYL 385 (481)
+++|+|+|+|.+|+||++|+|+++++. ++|.+..+. ......++++++|+|+|+++|+||+||++||+++|||||
T Consensus 272 ~~~~~f~wl~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkylS~lnYlRflIPeLLP~LdKVLYL 351 (535)
T PLN02867 272 KGLHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFEGTHKRSLEALSPSCLSLLNHLRIYIPELFPDLNKIVFL 351 (535)
T ss_pred EeehhccccccccccHHHHHHHhhhhhhhhhccccccccccccccccchhhcChhhhhHHHHHHHHHHHHhhccCeEEEe
Confidence 999999999999999999999887652 233321100 011224678899999999999999999999999999999
Q ss_pred EcceeeccCchHHHccCCCCCEEEEEecc--ccc---hhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhch
Q 011612 386 DDDIVVQRDLTGLWKIDMDGKVNGAVETC--FGS---FHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKC 460 (481)
Q Consensus 386 D~DvIV~~DLseLw~iDL~gkviAAVeDc--~~~---~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~ni 460 (481)
|+||||++||++||++||+|+++|||+|+ ... ..++.+|+||++|.+..+|+++.||||+|||||||++||++++
T Consensus 352 D~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~i~~~~~p~~cYFNSGVmLINL~~WRe~nI 431 (535)
T PLN02867 352 DDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNLDQERCAWLYGMNVFDLKAWRRTNI 431 (535)
T ss_pred cCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchhhhccCCCCCcceecceeeeeHHHHHHhcH
Confidence 99999999999999999999999999874 221 2457789999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHccC
Q 011612 461 TEEYHYWQNLVRL 473 (481)
Q Consensus 461 t~k~~~~~~~n~d 473 (481)
|+++++|++++.+
T Consensus 432 Tek~~~~Le~n~~ 444 (535)
T PLN02867 432 TEAYHKWLKLSLN 444 (535)
T ss_pred HHHHHHHHHhchh
Confidence 9999999999865
No 10
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=7.2e-42 Score=338.37 Aligned_cols=181 Identities=50% Similarity=0.858 Sum_probs=166.6
Q ss_pred eeEEEEeccccccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccccccchhHHhh
Q 011612 251 YHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQL 330 (481)
Q Consensus 251 iHIai~sDNvLaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~~Pvl~ql 330 (481)
+|||+++||+++++|+++|++.|+++|.+++|||+||+++.+.|++||.+++.++++|+|++++++.+.+....++++|+
T Consensus 1 ~hiv~~~Dn~l~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 80 (257)
T cd06429 1 IHVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQL 80 (257)
T ss_pred CCEEEEecchhHHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999998888776777788888
Q ss_pred ccccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHccCCCCCEEEE
Q 011612 331 ESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGA 410 (481)
Q Consensus 331 ~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~gkviAA 410 (481)
+++. ....++.++++++|.++|+||+||++||+++||||||+|+||++||++||++||+|+++||
T Consensus 81 ~~~~---------------~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aa 145 (257)
T cd06429 81 ESEA---------------DTSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGA 145 (257)
T ss_pred hccc---------------cccccccCCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEE
Confidence 7743 1134567788999999999999999999999999999999999999999999999999999
Q ss_pred EeccccchhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHccCc
Q 011612 411 VETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRLI 474 (481)
Q Consensus 411 VeDc~~~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~d~ 474 (481)
|+| |||||||||||++||++++++++++|++.+.++
T Consensus 146 v~d----------------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~ 181 (257)
T cd06429 146 VET----------------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEE 181 (257)
T ss_pred Ehh----------------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhc
Confidence 998 689999999999999999999999999888754
No 11
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=99.97 E-value=1.2e-31 Score=274.20 Aligned_cols=188 Identities=18% Similarity=0.239 Sum_probs=141.0
Q ss_pred CCceeEEEEeccc--cccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccccccch
Q 011612 248 PKLYHYAIFSDNV--LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVP 325 (481)
Q Consensus 248 p~~iHIai~sDNv--LaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~~P 325 (481)
+..+|||+++|+. .+++|+|+|+++|+++ ..+.|||++++++.+..+.+-.+....+..|+++.++. +++
T Consensus 23 ~~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~-~~~------ 94 (334)
T PRK15171 23 KNSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINC-ERL------ 94 (334)
T ss_pred CCceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCH-HHH------
Confidence 4789999999954 3678999999999876 57999999999999988877665544466666665531 111
Q ss_pred hHHhhccccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCC-CCeEEEEEcceeeccCchHHHccCCC
Q 011612 326 VLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPK-LHRILFLDDDIVVQRDLTGLWKIDMD 404 (481)
Q Consensus 326 vl~ql~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~-ldKVLYLD~DvIV~~DLseLw~iDL~ 404 (481)
. .++...++|.++|+||+||++||+ ++||||||+|+||++||++||++||+
T Consensus 95 ---------------~-------------~~~~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~ 146 (334)
T PRK15171 95 ---------------K-------------SLPSTKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFA 146 (334)
T ss_pred ---------------h-------------CCcccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCC
Confidence 0 011234689999999999999995 99999999999999999999999999
Q ss_pred CCEEEEE-eccccc-hhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHcc--CccccCC
Q 011612 405 GKVNGAV-ETCFGS-FHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVR--LILIFNH 479 (481)
Q Consensus 405 gkviAAV-eDc~~~-~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~--d~~ly~~ 479 (481)
|..+||| .|+... +......++. | ....+|||||||||||++||++++++++++++..+. .++.|+|
T Consensus 147 ~~~~aav~~d~~~~~~~~~~~~l~~--~------~~~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~~~~D 217 (334)
T PRK15171 147 ENEIAAVVAEGDAEWWSKRAQSLQT--P------GLASGYFNSGFLLINIPAWAQENISAKAIEMLADPEIVSRITHLD 217 (334)
T ss_pred CCeEEEEEeccchhHHHHHHHhcCC--c------cccccceecceEEEcHHHHHHhhHHHHHHHHHhccccccceeecC
Confidence 6555555 555321 1111222221 1 012469999999999999999999999999998653 4666665
No 12
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=99.96 E-value=5.9e-30 Score=248.94 Aligned_cols=184 Identities=18% Similarity=0.210 Sum_probs=141.0
Q ss_pred eeEEEEecc--cc-ccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccccccchhH
Q 011612 251 YHYAIFSDN--VL-AASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVL 327 (481)
Q Consensus 251 iHIai~sDN--vL-aasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~~Pvl 327 (481)
+||++++++ ++ +++|++.|+++|+++ .++|||++++++.+..+.+..+....+..++++.++.-.+..
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~------- 71 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVD------- 71 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcch-------
Confidence 577766653 43 568999999999986 699999999999988887776655557777777653111100
Q ss_pred HhhccccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHccCCCCCE
Q 011612 328 RQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKV 407 (481)
Q Consensus 328 ~ql~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~gkv 407 (481)
+ . ...++++..+|+||++|+++|+++||||||+|+||++||++||++|++|++
T Consensus 72 ------------~--------------~-~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~ 124 (246)
T cd00505 72 ------------S--------------E-HLKRPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQE 124 (246)
T ss_pred ------------h--------------h-hhcCccccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCe
Confidence 0 0 012467899999999999999999999999999999999999999999999
Q ss_pred EEEEeccccchh--hhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHccCccccCC
Q 011612 408 NGAVETCFGSFH--RYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRLILIFNH 479 (481)
Q Consensus 408 iAAVeDc~~~~~--r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~d~~ly~~ 479 (481)
+|||+||..... .+...+ +...+.+|||||||||||++||++++.++++++..++.++..++|
T Consensus 125 ~aav~d~~~~~~~~~~~~~~---------~~~~~~~yfNsGVmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~D 189 (246)
T cd00505 125 LAAAPDPGDRREGKYYRQKR---------SHLAGPDYFNSGVFVVNLSKERRNQLLKVALEKWLQSLSSLSGGD 189 (246)
T ss_pred EEEccCchhhhccchhhccc---------CCCCCCCceeeeeEEEechHHHHHHHHHHHHHHHHhhcccCccCC
Confidence 999999864210 111111 223456899999999999999999998888888776666666665
No 13
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=99.96 E-value=1.8e-29 Score=244.62 Aligned_cols=186 Identities=20% Similarity=0.309 Sum_probs=146.3
Q ss_pred eeEEEEecc-cc-ccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccccccchhHH
Q 011612 251 YHYAIFSDN-VL-AASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLR 328 (481)
Q Consensus 251 iHIai~sDN-vL-aasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~~Pvl~ 328 (481)
+|||+++|. ++ +++|+++|+++|+++ +.++|||++++++.+.++.+.......+..|+++.++.-.+
T Consensus 1 ~~I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~---------- 69 (248)
T cd04194 1 MNIVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDF---------- 69 (248)
T ss_pred CCEEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHH----------
Confidence 699999995 44 568999999999986 57999999999998877766655444566777665531000
Q ss_pred hhccccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHccCCCCCEE
Q 011612 329 QLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVN 408 (481)
Q Consensus 329 ql~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~gkvi 408 (481)
.. .. ...++++..+|+||++|+++|+++||||||+|+||++||++||++|++|+.+
T Consensus 70 ------------~~-----------~~-~~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~ 125 (248)
T cd04194 70 ------------KF-----------FP-ATTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLL 125 (248)
T ss_pred ------------hc-----------CC-cccccccHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEE
Confidence 00 00 0234678999999999999999999999999999999999999999999999
Q ss_pred EEEeccccchhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHccCccccCC
Q 011612 409 GAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRLILIFNH 479 (481)
Q Consensus 409 AAVeDc~~~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~d~~ly~~ 479 (481)
|||+||......... .........+||||||||+|+++||+.++++++++|++.+..+..|+|
T Consensus 126 aa~~d~~~~~~~~~~--------~~~~~~~~~~yfNsGv~l~nl~~~r~~~~~~~~~~~~~~~~~~~~~~D 188 (248)
T cd04194 126 AAVRDPFIEQEKKRK--------RRLGGYDDGSYFNSGVLLINLKKWREENITEKLLELIKEYGGRLIYPD 188 (248)
T ss_pred EEEecccHHHHHHHH--------hhcCCCcccceeeecchheeHHHHHHhhhHHHHHHHHHhCCCceeeCC
Confidence 999999753221111 011233567899999999999999999999999999999987777776
No 14
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=99.96 E-value=9.9e-29 Score=247.41 Aligned_cols=184 Identities=22% Similarity=0.316 Sum_probs=133.0
Q ss_pred eEEEEeccc-cccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccccccchhHHhh
Q 011612 252 HYAIFSDNV-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQL 330 (481)
Q Consensus 252 HIai~sDNv-LaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~~Pvl~ql 330 (481)
-||++.+|+ ..++|+|.|+++|+. ..++|||++|+++.+.++.+.......++.|.++.++++.. +
T Consensus 4 ~iv~~~~~y~~~~~~~i~Sil~n~~--~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~------~----- 70 (280)
T cd06431 4 AIVCAGYNASRDVVTLVKSVLFYRR--NPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKS------R----- 70 (280)
T ss_pred EEEEccCCcHHHHHHHHHHHHHcCC--CCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhh------h-----
Confidence 467777776 567899999999985 45999999999999999998876666688888887643211 0
Q ss_pred ccccceeeeeccccccccccccccccCCCCCcc-HhhhHHhhhhhhcCC-CCeEEEEEcceeeccCchHHHcc--CCCC-
Q 011612 331 ESANLQRFYFENKLENATKDTTNMKFRNPKYLS-ILNHLRFYLPEMYPK-LHRILFLDDDIVVQRDLTGLWKI--DMDG- 405 (481)
Q Consensus 331 ~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS-~~ty~Rf~LPeIlP~-ldKVLYLD~DvIV~~DLseLw~i--DL~g- 405 (481)
+. ..++ .++| ..+|+||+||++||+ ++||||||+|+||++||++||++ |+.|
T Consensus 71 ---------~~-------------~~~~-~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~ 127 (280)
T cd06431 71 ---------VS-------------WIPN-KHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQ 127 (280)
T ss_pred ---------hc-------------cCcc-cchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCC
Confidence 00 0011 2344 448899999999995 99999999999999999999998 6765
Q ss_pred CEEEEEeccccchhhhhhcc-CCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHc---cCccccCC
Q 011612 406 KVNGAVETCFGSFHRYAQYM-NFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLV---RLILIFNH 479 (481)
Q Consensus 406 kviAAVeDc~~~~~r~~~~L-nfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n---~d~~ly~~ 479 (481)
+++|||+|.... |.+.. ....| +.....|||||||||||++||++++++++..+.+++ ..+..|+|
T Consensus 128 ~~~a~v~~~~~~---~~~~~~~~~~~-----~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~D 197 (280)
T cd06431 128 QVLGLVENQSDW---YLGNLWKNHRP-----WPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLAD 197 (280)
T ss_pred cEEEEeccchhh---hhhhhhhccCC-----CcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCc
Confidence 588888875321 11110 00001 111235999999999999999999999988776654 23344554
No 15
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=99.95 E-value=2e-28 Score=241.10 Aligned_cols=190 Identities=15% Similarity=0.184 Sum_probs=133.5
Q ss_pred eeEEEE-eccc--cccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccccccchhH
Q 011612 251 YHYAIF-SDNV--LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVL 327 (481)
Q Consensus 251 iHIai~-sDNv--LaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~~Pvl 327 (481)
+||... +|+. .+++|++.|+++|+. .++.|||++|+++.+..+.+-.+....++.++++.++.-.|+.
T Consensus 1 ini~~~~~~~~y~~~~~v~l~Sll~nn~--~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~------- 71 (248)
T cd06432 1 INIFSVASGHLYERFLRIMMLSVMKNTK--SPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLH------- 71 (248)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHcCC--CCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhh-------
Confidence 355444 4443 357899999999985 5699999999999988777766655557777777653111110
Q ss_pred HhhccccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCC-CCeEEEEEcceeeccCchHHHccCCCCC
Q 011612 328 RQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPK-LHRILFLDDDIVVQRDLTGLWKIDMDGK 406 (481)
Q Consensus 328 ~ql~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~-ldKVLYLD~DvIV~~DLseLw~iDL~gk 406 (481)
. .+...+ ...+|.|++++++||+ ++||||||+|+||.+||++||++||+|+
T Consensus 72 --------------~-------------~~~~~~-~~~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~ 123 (248)
T cd06432 72 --------------K-------------QTEKQR-IIWGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGA 123 (248)
T ss_pred --------------c-------------ccccch-hHHHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCC
Confidence 0 000001 2467899999999996 9999999999999999999999999999
Q ss_pred EEEEEeccccchhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHH---HHccCccccCC
Q 011612 407 VNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQ---NLVRLILIFNH 479 (481)
Q Consensus 407 viAAVeDc~~~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~---~~n~d~~ly~~ 479 (481)
++|||+||.... .......|......+.+ .+..|||||||||||++||++++++++.+++ ..+..++.|+|
T Consensus 124 ~~Aav~d~~~~~-~~~~~~~~~~~~~~~~l-~~~~YfNSGVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~D 197 (248)
T cd06432 124 PYGYTPFCDSRK-EMDGFRFWKQGYWKSHL-RGRPYHISALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLD 197 (248)
T ss_pred eEEEeeccccch-hcccchhhhhhhhhhhc-CCCCccceeeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCC
Confidence 999999986421 00000000000001122 2456999999999999999999999666554 45667788877
No 16
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=2.8e-28 Score=248.66 Aligned_cols=185 Identities=20% Similarity=0.315 Sum_probs=147.4
Q ss_pred ceeEEEEeccc--cccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEee--ccccccccccch
Q 011612 250 LYHYAIFSDNV--LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAV--EDYKFLNSSYVP 325 (481)
Q Consensus 250 ~iHIai~sDNv--LaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~i--e~f~~Ln~~~~P 325 (481)
.++||+++|++ .+++|+|.|++.|++. -.+.|||++|+++.+.++++-.+..+.+..+.+..+ +.|.-
T Consensus 2 ~~~Iv~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~~~~------- 73 (325)
T COG1442 2 TIPIAFAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDIEPFLD------- 73 (325)
T ss_pred cccEEEEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEechhhhc-------
Confidence 46899999965 4788999999999995 569999999999999998887765555544443333 21110
Q ss_pred hHHhhccccceeeeeccccccccccccccccC-CCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHccCCC
Q 011612 326 VLRQLESANLQRFYFENKLENATKDTTNMKFR-NPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMD 404 (481)
Q Consensus 326 vl~ql~s~~~~~y~F~~~~~~~~~~~~~lk~r-~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~ 404 (481)
++ ..+++|.++|+||+||++||+.+|+||||+||||+|||++||.+|++
T Consensus 74 ------------------------------~~~~~~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~ 123 (325)
T COG1442 74 ------------------------------YPPFTKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLE 123 (325)
T ss_pred ------------------------------ccccccchHHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCC
Confidence 11 23568999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeccccchhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHccCccccCC
Q 011612 405 GKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRLILIFNH 479 (481)
Q Consensus 405 gkviAAVeDc~~~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~d~~ly~~ 479 (481)
++++|||.|+..... .... ...........|||+|||++|+++||+++++++++++++..++.+.|||
T Consensus 124 ~~~~aaV~D~~~~~~--~~~~-----~~~~~~~~~~~yFNaG~llinl~~W~~~~i~~k~i~~~~~~~~~~~~~D 191 (325)
T COG1442 124 EYYLAAVRDVFSHYM--KEGA-----LRLEKGDLEGSYFNAGVLLINLKLWREENIFEKLIELLKDKENDLLYPD 191 (325)
T ss_pred cceEEEEeehhhhhh--hhhh-----hHhhhcccccccCccceeeehHHHHHHhhhHHHHHHHHhccccccCCcc
Confidence 999999999875211 1100 0011223457899999999999999999999999999988888898887
No 17
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=99.94 E-value=2.6e-26 Score=217.04 Aligned_cols=192 Identities=23% Similarity=0.377 Sum_probs=128.6
Q ss_pred eEEEEecc-c-cccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccccccchhHHh
Q 011612 252 HYAIFSDN-V-LAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQ 329 (481)
Q Consensus 252 HIai~sDN-v-LaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~~Pvl~q 329 (481)
||++++|. + .+++|+|+|++.|++++..++|||++++++.+..+.+............+...+ ... .
T Consensus 1 ~i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~--------~-- 69 (250)
T PF01501_consen 1 HIVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPD-ISM--------L-- 69 (250)
T ss_dssp -EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETS-GGH--------H--
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccch-HHh--------h--
Confidence 89999995 4 367899999999999888899999999999988877755432211111011000 000 0
Q ss_pred hccccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHccCCCCCEEE
Q 011612 330 LESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNG 409 (481)
Q Consensus 330 l~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~gkviA 409 (481)
..+ ........+++..+|+||++|++||+++||||||+|++|.+||.+||++|++|+.+|
T Consensus 70 ------~~~--------------~~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~ 129 (250)
T PF01501_consen 70 ------EEF--------------QFNSPSKRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLA 129 (250)
T ss_dssp ------H----------------TTS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEE
T ss_pred ------hhh--------------hhcccccccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhcc
Confidence 000 001123357899999999999999999999999999999999999999999999999
Q ss_pred EEeccccchhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHccCccccCC
Q 011612 410 AVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRLILIFNH 479 (481)
Q Consensus 410 AVeDc~~~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~d~~ly~~ 479 (481)
|++|+... ... ....+..........+|||+|||++|+++||++++.+++++|++.+.....++|
T Consensus 130 a~~~~~~~--~~~---~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 194 (250)
T PF01501_consen 130 AVEDESFD--NFP---NKRFPFSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGMKLGFPD 194 (250)
T ss_dssp EEE----H--HHH---TSTTSSEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTTT-SSCH
T ss_pred ccccchhh--hhh---hcccchhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhcccccCcCc
Confidence 99993221 111 100111111233568999999999999999999999999999888776555543
No 18
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.93 E-value=1.2e-25 Score=227.37 Aligned_cols=181 Identities=17% Similarity=0.340 Sum_probs=122.7
Q ss_pred eeEEEEe-cccc-ccccchhhhcccCCCCCceEEEEEeCC-CChHH---HHHHHhhcCCCCceE--EEEeeccccccccc
Q 011612 251 YHYAIFS-DNVL-AASVVVNSAVKNSKEPWKHVFHVVTDK-MNLGA---MQVMFKLKDYNGAHI--EVKAVEDYKFLNSS 322 (481)
Q Consensus 251 iHIai~s-DNvL-aasVvInSiv~Nsk~pe~ivFHIVTD~-in~~a---mk~wf~~n~~~~a~I--~V~~ie~f~~Ln~~ 322 (481)
+|+|+.+ |+.+ ..-|+|.|++.|+. ..++|||++|+ ...+. ++.|-.. ....+ .+..|
T Consensus 1 ~~~~vv~~g~~~~~~~~~lkSil~~n~--~~l~Fhi~~d~~~~~~~~~~l~~~~~~---~~~~i~~~i~~I--------- 66 (304)
T cd06430 1 MHLAVVACGERLEETLTMLKSAIVFSQ--KPLRFHIFAEDQLKQSFKEKLDDWPEL---IDRKFNYTLHPI--------- 66 (304)
T ss_pred CEEEEEEcCCcHHHHHHHHHHHHHhCC--CCEEEEEEECCccCHHHHHHHHHHHHh---ccceeeeEEEEE---------
Confidence 4655444 4444 34699999999985 46999999998 44433 3334211 11222 22222
Q ss_pred cchhHHhhccccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHcc-
Q 011612 323 YVPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKI- 401 (481)
Q Consensus 323 ~~Pvl~ql~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~i- 401 (481)
.|++. . ...+ +..+++.+|+||++|++||++|||||||+|+||.+||++||++
T Consensus 67 ----------------~~P~~------~--~~~w--s~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~ 120 (304)
T cd06430 67 ----------------TFPSG------N--AAEW--KKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFL 120 (304)
T ss_pred ----------------ecCcc------c--hhhh--hhcccHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHH
Confidence 11110 0 0011 1245679999999999999999999999999999999999999
Q ss_pred -CCCCC-EEEEEecccc-chhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHh-----------hchHHHHHHH
Q 011612 402 -DMDGK-VNGAVETCFG-SFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRR-----------EKCTEEYHYW 467 (481)
Q Consensus 402 -DL~gk-viAAVeDc~~-~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~-----------~nit~k~~~~ 467 (481)
|++|+ ++|++++... +...|.... .+| + ....|||||||+|||++||+ .+++++++++
T Consensus 121 ~df~~~~~aA~v~e~~~~~~~~~~~~~--~~~-----~-~~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~ 192 (304)
T cd06430 121 KKFNSTQLAAMAPEHEEPNIGWYNRFA--RHP-----Y-YGKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPL 192 (304)
T ss_pred hhcCCCeEEEEEecccccchhhhhhhc--ccC-----c-ccccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHH
Confidence 99985 6666666422 111121000 011 1 12357999999999999999 7899999999
Q ss_pred HHHccCccccCC
Q 011612 468 QNLVRLILIFNH 479 (481)
Q Consensus 468 ~~~n~d~~ly~~ 479 (481)
++++..++.|+|
T Consensus 193 ~~~~~~~l~~~D 204 (304)
T cd06430 193 YKKYKLKITWGD 204 (304)
T ss_pred HHhcccCCCCCC
Confidence 999999899987
No 19
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.54 E-value=2.1e-14 Score=140.25 Aligned_cols=144 Identities=15% Similarity=0.095 Sum_probs=98.7
Q ss_pred ec-ccc-ccccchhhhcccCCCCCceEEEE-EeCCCChHHHHHHHhhcCCCCceEEEEeeccccccccccchhHHhhccc
Q 011612 257 SD-NVL-AASVVVNSAVKNSKEPWKHVFHV-VTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLESA 333 (481)
Q Consensus 257 sD-NvL-aasVvInSiv~Nsk~pe~ivFHI-VTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~~Pvl~ql~s~ 333 (481)
+| +++ +++|++.|+.+|+++ +.+|| ++++++.+..+.+.... ++++.++.++..+
T Consensus 8 ~~~~Y~~~a~vl~~SL~~~~~~---~~~~vl~~~~is~~~~~~L~~~~------~~~~~v~~i~~~~------------- 65 (240)
T cd02537 8 TNDDYLPGALVLGYSLRKVGSS---YDLVVLVTPGVSEESREALEEVG------WIVREVEPIDPPD------------- 65 (240)
T ss_pred cChhHHHHHHHHHHHHHhcCCC---CCEEEEECCCCCHHHHHHHHHcC------CEEEecCccCCcc-------------
Confidence 44 554 567999999999875 34444 45678888777665432 2333333211100
Q ss_pred cceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHccCCCCCEEEEEec
Q 011612 334 NLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVET 413 (481)
Q Consensus 334 ~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~gkviAAVeD 413 (481)
. . . .....++..+|.||+++++. +++||||||+|+||.+||.+||++ +..++|+.|
T Consensus 66 ---------~---------~-~-~~~~~~~~~~~~kl~~~~l~-~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d 121 (240)
T cd02537 66 ---------S---------A-N-LLKRPRFKDTYTKLRLWNLT-EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPD 121 (240)
T ss_pred ---------h---------h-h-hccchHHHHHhHHHHhcccc-ccceEEEEeCCeeEccCHHHHhCC---CCceeeecc
Confidence 0 0 0 00123567889999999975 699999999999999999999987 677888877
Q ss_pred cccchhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHccC
Q 011612 414 CFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRL 473 (481)
Q Consensus 414 c~~~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~d 473 (481)
+.. ..|||+|||++|+.+ ++.+++++++..+.+
T Consensus 122 ~~~-----------------------~~~fNsGv~l~~~~~----~~~~~~~~~~~~~~~ 154 (240)
T cd02537 122 CGW-----------------------PDLFNSGVFVLKPSE----ETFNDLLDALQDTPS 154 (240)
T ss_pred cCc-----------------------cccccceEEEEcCCH----HHHHHHHHHHhccCC
Confidence 531 258999999999854 455667777766543
No 20
>PLN00176 galactinol synthase
Probab=99.39 E-value=2.1e-12 Score=132.97 Aligned_cols=102 Identities=19% Similarity=0.278 Sum_probs=70.7
Q ss_pred hhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHccCCCCCEEEEEeccccchh--hhh-----------hccCCCchh
Q 011612 365 LNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFH--RYA-----------QYMNFSHPL 431 (481)
Q Consensus 365 ~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~gkviAAVeDc~~~~~--r~~-----------~~Lnfs~P~ 431 (481)
.+|.||.++++. +++||||||+|+||.++|.+||+++ +..+|||.||..+.. .+. ..++| |.
T Consensus 100 i~~tKl~iw~l~-~ydkvlyLDaD~lv~~nid~Lf~~~--~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~w--p~ 174 (333)
T PLN00176 100 INYSKLRIWEFV-EYSKMIYLDGDIQVFENIDHLFDLP--DGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTW--PA 174 (333)
T ss_pred hhhhhhhhcccc-ccceEEEecCCEEeecChHHHhcCC--CcceEEEecccccccccccccccccccccchhhccc--hh
Confidence 467799999976 5899999999999999999999874 346899999865311 000 01222 11
Q ss_pred hhhhcC-CCCcccccchhhccHHHHHhhchHHHHHHHHHHccCccccCC
Q 011612 432 IKAKFN-PKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRLILIFNH 479 (481)
Q Consensus 432 i~~~f~-~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~d~~ly~~ 479 (481)
... +...||||||||||..+|+.+++. ++++.+.. ..|+|
T Consensus 175 ---~~g~~~~~yFNSGVlvinps~~~~~~ll----~~l~~~~~-~~f~D 215 (333)
T PLN00176 175 ---ELGPPPPLYFNAGMFVFEPSLSTYEDLL----ETLKITPP-TPFAE 215 (333)
T ss_pred ---hccCCCCCeEEeEEEEEEcCHHHHHHHH----HHHHhcCC-CCCCC
Confidence 111 245799999999999999987765 45544432 34444
No 21
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.04 E-value=1.5e-10 Score=116.69 Aligned_cols=81 Identities=12% Similarity=0.073 Sum_probs=66.3
Q ss_pred CccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHccCCCCCEEEEEeccccchhhhhhccCCCchhhhhhcCCCC
Q 011612 361 YLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKA 440 (481)
Q Consensus 361 yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~gkviAAVeDc~~~~~r~~~~Lnfs~P~i~~~f~~~~ 440 (481)
.++. +|.||.++++ ++++||||||+|++|.++|.+||+++.... +||+. . .
T Consensus 76 ~~~~-~~tKl~~~~l-~~y~kvlyLDaD~l~~~~ideLf~~~~~~~-~Aap~-~-----------~-------------- 126 (278)
T cd06914 76 YWAK-SLTKLRAFNQ-TEYDRIIYFDSDSIIRHPMDELFFLPNYIK-FAAPR-A-----------Y-------------- 126 (278)
T ss_pred cHHH-HHHHHHhccc-cceeeEEEecCChhhhcChHHHhcCCcccc-eeeec-C-----------c--------------
Confidence 3444 4999999999 679999999999999999999999884333 44432 1 0
Q ss_pred cccccchhhccHHHHHhhchHHHHHHHHHH
Q 011612 441 CAWAYGMNFFDLDAWRREKCTEEYHYWQNL 470 (481)
Q Consensus 441 cyFNsGVmLiDL~kWR~~nit~k~~~~~~~ 470 (481)
-||||||||||+.+|+.+++++++.+....
T Consensus 127 ~~FNSGvmvi~ps~~~~~~l~~~~~~~~~~ 156 (278)
T cd06914 127 WKFASHLMVIKPSKEAFKELMTEILPAYLN 156 (278)
T ss_pred ceecceeEEEeCCHHHHHHHHHHHHHhccc
Confidence 189999999999999999999999987653
No 22
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=8.5e-08 Score=110.54 Aligned_cols=180 Identities=18% Similarity=0.281 Sum_probs=122.4
Q ss_pred CCCceeEEEEeccc-c-c-cccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeecccccccccc
Q 011612 247 DPKLYHYAIFSDNV-L-A-ASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSY 323 (481)
Q Consensus 247 Dp~~iHIai~sDNv-L-a-asVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~ 323 (481)
|.+.|||.-..-.- + . .-++|.|+++|++.| +.|+++-+-++..-.+..=-++.-.+..++.++ |+|-.
T Consensus 1178 ~~~vINIFSvASGHLYERflrIMm~SvlknTktp--VKFWfLkNyLSPtFKe~iP~mA~eYnFeyElv~---YkWPr--- 1249 (1470)
T KOG1879|consen 1178 DKEVINIFSVASGHLYERFLRIMMLSVLKNTKTP--VKFWFLKNYLSPTFKESIPHMAKEYNFEYELVQ---YKWPR--- 1249 (1470)
T ss_pred ccceEEEEeeccccHHHHHHHHHHHHHHhCCCCc--eeEEeehhhcChHHHHHHHHHHHHhCceEEEEE---ecCch---
Confidence 34467776444332 2 2 348999999999987 999999998886543333334444455555554 34411
Q ss_pred chhHHhhccccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCC-CCeEEEEEcceeeccCchHHHccC
Q 011612 324 VPVLRQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPK-LHRILFLDDDIVVQRDLTGLWKID 402 (481)
Q Consensus 324 ~Pvl~ql~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~-ldKVLYLD~DvIV~~DLseLw~iD 402 (481)
-++|+.. +.| -+..|==+||--+||- ++||||+|+|-||..||.||.++|
T Consensus 1250 --WLhqQ~E----------------------KQR-----iiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~EL~dfd 1300 (1470)
T KOG1879|consen 1250 --WLHQQTE----------------------KQR-----IIWGYKILFLDVLFPLNVDKVIFVDADQIVRADLKELMDFD 1300 (1470)
T ss_pred --hhhhhhh----------------------hhh-----hhhhhhhhhhhhccccccceEEEEcchHhhhhhhHHHHhcc
Confidence 1121111 111 1344555677777895 999999999999999999999999
Q ss_pred CCCCEEEEEeccccchhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHH
Q 011612 403 MDGKVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYH 465 (481)
Q Consensus 403 L~gkviAAVeDc~~~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~ 465 (481)
|+|.+.|-++.|..+ .....|.+|..--.++.. .+..|.-+..-|+||++.|+-.-.+++.
T Consensus 1301 l~GaPygYtPfCdsR-~EMDGyRFWK~GYW~~hL-~grkYHISALYVVDLkrFReiaAGDrLR 1361 (1470)
T KOG1879|consen 1301 LGGAPYGYTPFCDSR-REMDGYRFWKQGYWKKHL-RGRKYHISALYVVDLKRFREIAAGDRLR 1361 (1470)
T ss_pred cCCCccccCcccccc-ccccchhHHhhhHHHHHh-ccCccccceeeeeeHHHHHhcccchHHH
Confidence 999999999999753 233444445332223333 3578999999999999999988877775
No 23
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=94.80 E-value=0.0078 Score=62.04 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=29.8
Q ss_pred hhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHccC
Q 011612 365 LNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKID 402 (481)
Q Consensus 365 ~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~iD 402 (481)
.++.++-+-+.- ++|||+|||+|.||.+++.+||+..
T Consensus 155 ~mftKLrVfeqt-EyDRvifLDsDaivlknmDklFd~P 191 (368)
T COG5597 155 DMFTKLRVFEQT-EYDRVIFLDSDAIVLKNMDKLFDYP 191 (368)
T ss_pred HHhHHHHhhhhh-hhceEEEeccchHHhhhhHHHhcch
Confidence 455666655544 5899999999999999999999854
No 24
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=83.74 E-value=2.3 Score=42.94 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=29.3
Q ss_pred hHHhhhhhhcCCCCeEEEEEcceeeccCchHHHccC
Q 011612 367 HLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKID 402 (481)
Q Consensus 367 y~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~iD 402 (481)
|..=.+.-++...+.||+||+|.|...|+..||+.+
T Consensus 79 ~~~K~lA~l~ssFeevllLDaD~vpl~~p~~lF~~~ 114 (271)
T PF11051_consen 79 FQNKWLALLFSSFEEVLLLDADNVPLVDPEKLFESE 114 (271)
T ss_pred chhhhhhhhhCCcceEEEEcCCcccccCHHHHhcCc
Confidence 333345567778999999999999999999999753
No 25
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=68.31 E-value=5.4 Score=37.90 Aligned_cols=50 Identities=20% Similarity=0.130 Sum_probs=31.2
Q ss_pred HhhhHHhh-hhhhcCCCCeEEEEEcceeeccCchHHHccCCCCCEEEEEeccc
Q 011612 364 ILNHLRFY-LPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNGAVETCF 415 (481)
Q Consensus 364 ~~ty~Rf~-LPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~gkviAAVeDc~ 415 (481)
..+..|.- +-+++..=--|+|+|+|+|..+|..+++ +-.+.-+.+..|+.
T Consensus 50 ~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~--~~~~~Di~~~~d~~ 100 (212)
T PF03407_consen 50 KLTWLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYF--ENPDADILFSSDGW 100 (212)
T ss_pred HHHHHHHHHHHHHHHcCCceEEecCCEEEecCcHHhh--ccCCCceEEecCCC
Confidence 34444443 2344544235999999999999999999 22344344444654
No 26
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=64.29 E-value=3.3 Score=44.40 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=25.1
Q ss_pred HhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHc
Q 011612 364 ILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWK 400 (481)
Q Consensus 364 ~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~ 400 (481)
..+..|+.+=-=+-. ||||+|+||.++++.|=+
T Consensus 227 lSdl~RLA~LyKYGG----vYLDTDvIvLksl~~l~N 259 (409)
T KOG1928|consen 227 LSDLSRLALLYKYGG----VYLDTDVIVLKSLSNLRN 259 (409)
T ss_pred HHHHHHHHHHHHhCC----EEeeccEEEecccccccc
Confidence 466778775333333 899999999999999985
No 27
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=56.03 E-value=25 Score=38.48 Aligned_cols=116 Identities=16% Similarity=0.260 Sum_probs=63.3
Q ss_pred eeEEEEeccccccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccccccchhHHhh
Q 011612 251 YHYAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQL 330 (481)
Q Consensus 251 iHIai~sDNvLaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~~Pvl~ql 330 (481)
.-+|++|+..-+.--++.|++++.+..+.+.+-|--|+.+.+..+..... .+ .++. +++.. ..|+.
T Consensus 96 pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~y---~~-~v~~--i~~~~-----~~~i~--- 161 (434)
T PF03071_consen 96 PVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKSY---GD-QVTY--IQHPD-----FSPIT--- 161 (434)
T ss_dssp -EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHGG---GG-GSEE--EE-S-------S------
T ss_pred eEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHHh---hh-hhee--eecCC-----cCCce---
Confidence 34567777666677889999998766566666677787766654432221 11 1111 11110 00110
Q ss_pred ccccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCC--CCeEEEEEcceeeccCchHHHc
Q 011612 331 ESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPK--LHRILFLDDDIVVQRDLTGLWK 400 (481)
Q Consensus 331 ~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~--ldKVLYLD~DvIV~~DLseLw~ 400 (481)
+.. ...++ ..|...+.||+.-|-.+|.. +++||.|.+|+.|--|.-+-++
T Consensus 162 -----------------~~~-~~~~~--~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~ 213 (434)
T PF03071_consen 162 -----------------IPP-KEKKF--KGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFS 213 (434)
T ss_dssp -------------------T-T-GGG--HHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHH
T ss_pred -----------------eCc-ccccc--cchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHH
Confidence 000 00011 13567899999999999964 8999999999999999876664
No 28
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=50.01 E-value=2.1e+02 Score=35.47 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=14.8
Q ss_pred CcCchhhHHHHHHHHHHHHH
Q 011612 142 LTIDESILRQFEKEVKERIK 161 (481)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~ 161 (481)
.+.+|+.+.+|..++++++.
T Consensus 1506 lp~tpeqi~~L~~~I~e~v~ 1525 (1758)
T KOG0994|consen 1506 LPLTPEQIQQLTGEIQERVA 1525 (1758)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 58888888888777766654
No 29
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=47.89 E-value=52 Score=34.75 Aligned_cols=112 Identities=16% Similarity=0.218 Sum_probs=63.8
Q ss_pred EEEEeccccccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccccccchhHHhhcc
Q 011612 253 YAIFSDNVLAASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQLES 332 (481)
Q Consensus 253 Iai~sDNvLaasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~~Pvl~ql~s 332 (481)
++++++..-+..-++.|++.+.+.-+...++|..|+-..+....-.. .. ..|. .+.+ .+.+
T Consensus 5 lv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~---~~-~~i~--~i~~---~~~~---------- 65 (334)
T cd02514 5 LVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKS---FG-DGVT--HIQH---PPIS---------- 65 (334)
T ss_pred EEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHh---hc-cccE--EEEc---cccc----------
Confidence 34444444456678999999853335588888999876653332211 11 0111 1111 0000
Q ss_pred ccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCC--CCeEEEEEcceeeccCchHHH
Q 011612 333 ANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPK--LHRILFLDDDIVVQRDLTGLW 399 (481)
Q Consensus 333 ~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~--ldKVLYLD~DvIV~~DLseLw 399 (481)
+.+. + ...++ ..|...+.+++.-+-.+|.. .++||+||+|+++.-|.-+.+
T Consensus 66 -------~~~~------~-~~~~~--~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf 118 (334)
T cd02514 66 -------IKNV------N-PPHKF--QGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYF 118 (334)
T ss_pred -------cccc------C-ccccc--chhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHH
Confidence 0000 0 00011 13556788888888888865 899999999999999954433
No 30
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=46.80 E-value=2.6e+02 Score=26.45 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=43.4
Q ss_pred HHHHHHhHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHHhhhcchhhhhhhccCCCcCchhhHH-HHHHHHHHH
Q 011612 82 LDQIRKQADD-HRALAMAYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILR-QFEKEVKER 159 (481)
Q Consensus 82 ~~~~~~~~~d-~~~~~~ay~~~a~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (481)
.+++.....+ |+-++..+......+...+ +.++.|+ ..+=+++.+-++++.+. ++.+..+..
T Consensus 48 ~dsiK~y~~~vh~pll~~~~~~~~~~~~~l-~~~~~~~---------------~~vd~~~~a~i~e~~L~~el~~~l~~~ 111 (204)
T PF04740_consen 48 YDSIKNYFSEVHIPLLQGLILLLEEYQEAL-KFIKDFQ---------------SEVDSSSNAIIDEDFLESELKKKLNQL 111 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHH---------------HHHcccccccccHHHHHHHHHHHHHHH
Confidence 4666777777 7777777776666666544 4444433 12222234567877776 776655555
Q ss_pred HHHHHHHHHHHHh
Q 011612 160 IKLTRQIIAEAKE 172 (481)
Q Consensus 160 ~~~~~~~~~~~k~ 172 (481)
...++.+....+.
T Consensus 112 ~~~~~~~~~~~~~ 124 (204)
T PF04740_consen 112 KEQIEDLQDEINS 124 (204)
T ss_pred HHHHHHHHHHHhh
Confidence 5555555555443
No 31
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=44.54 E-value=1.5e+02 Score=27.95 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-------cchHHHHHHHHHHHHHHH
Q 011612 148 ILRQFEKEVKERIKLTRQIIAEAKES-------FDNQLKIQKLKDTIFAVN 191 (481)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~k~~-------~d~~~~~~kl~~~~~~~e 191 (481)
++..+-.++...||.|.++|+++-+. |.-+..++.+|..|..+|
T Consensus 96 sv~~~cdsvD~sik~~y~liakceELn~~M~~v~~La~qIK~Ik~~lD~lE 146 (149)
T PF10157_consen 96 SVDKLCDSVDASIKSMYTLIAKCEELNESMKPVYKLAQQIKDIKKLLDLLE 146 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667888999999999999874 334444555555555544
No 32
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=41.73 E-value=14 Score=31.50 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=28.0
Q ss_pred CccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCc-hHHH
Q 011612 361 YLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDL-TGLW 399 (481)
Q Consensus 361 yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DL-seLw 399 (481)
+...+.++|+.+--..-. ||+|.|+++.+++ .++-
T Consensus 62 ~~~~sD~~R~~~L~~~GG----iY~D~D~~~~rpl~~~~~ 97 (103)
T PF04488_consen 62 YAHKSDLLRYLVLYKYGG----IYLDLDVICLRPLDDPWL 97 (103)
T ss_pred hHHHHHHHHHHHHHHcCc----EEEeCccccCcchhhhhh
Confidence 456789999998666655 8999999999999 5543
No 33
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=38.37 E-value=1.3e+02 Score=29.00 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Q 011612 149 LRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTKA 197 (481)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~k~~~d~~~~~~kl~~~~~~~ee~~~~~ 197 (481)
+.+-.+|+++.|++++.-|.+-.. .+...+.||.-...+|.++..-
T Consensus 118 Vd~~~~eL~~eI~~L~~~i~~le~---~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 118 VDQTKNELEDEIKQLEKEIQRLEE---IQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655544333 2344556666666666666643
No 34
>PRK09039 hypothetical protein; Validated
Probab=37.90 E-value=5.1e+02 Score=27.33 Aligned_cols=18 Identities=28% Similarity=0.121 Sum_probs=8.7
Q ss_pred CCcccCCC---CCCCcccchh
Q 011612 1 MATHRTAR---TGAPVTGRFT 18 (481)
Q Consensus 1 ~~~~~~~~---~~~~~~~~~~ 18 (481)
||..|..| ++.-.-||+-
T Consensus 1 ~~~~~~~~~~~~~~~wpg~vd 21 (343)
T PRK09039 1 MALARRRRRRRGVDYWPGFVD 21 (343)
T ss_pred CCccccCCCCCCCCCCchHHH
Confidence 55555332 2333566665
No 35
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.72 E-value=4.2e+02 Score=25.98 Aligned_cols=121 Identities=15% Similarity=0.240 Sum_probs=63.8
Q ss_pred CCCcchHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhH---------HH-HHHHHhhhhHHhhhcchhhhhhhccCCCcCc
Q 011612 76 DPLKPRLDQIRKQADDHRALAMAYASYARKLKLENSK---------LV-RIFADLSRNYTDLITKPTYQALMQSDSLTID 145 (481)
Q Consensus 76 ~~~~~~~~~~~~~~~d~~~~~~ay~~~a~~~~~~~~~---------~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (481)
+-+.+|++-+.|+-+.-+--.++|...-|.+...+.. .| .++..++.-++++.. +...|.+.....-
T Consensus 12 ~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~---~~~~l~~q~e~~l 88 (200)
T cd07637 12 VEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVN---YHMILFDQAQRSV 88 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3467899999999999999999999976665432221 11 111222223332211 1222222211111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH-HHHH----HHHHHHHHHHHHHHHH
Q 011612 146 ESILRQFEKEVKERIKLTRQIIAEAKESFDNQLK-IQKL----KDTIFAVNEQLTKAKK 199 (481)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~d~~~~-~~kl----~~~~~~~ee~~~~~~~ 199 (481)
-+-+.+|.++=-..+|..+.-..++.+.||.... ...+ -..+...++++..+++
T Consensus 89 ~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k~kk~~~l~Ea~~~L~~~Rk 147 (200)
T cd07637 89 RQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPRHKPHEVEEATSTLTITRK 147 (200)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Confidence 1223444444445667777778888877776542 1111 1245555666665554
No 36
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=35.41 E-value=62 Score=33.90 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=37.2
Q ss_pred hHHhhhhhhcCCCCeEEEEEcceeeccCchHHHccCC--CCCEEEEEec
Q 011612 367 HLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDM--DGKVNGAVET 413 (481)
Q Consensus 367 y~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL--~gkviAAVeD 413 (481)
+.+++.-.+||+++--||+|+-+.+.+|+..|.+--+ ++..+|+.+.
T Consensus 141 ~~K~lpHrlfp~y~ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H 189 (305)
T PF04765_consen 141 IPKLLPHRLFPNYDYSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKH 189 (305)
T ss_pred ccceeccccCCCCceEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCC
Confidence 4566667799999999999999999999988776544 4456777665
No 37
>PRK10132 hypothetical protein; Provisional
Probab=34.53 E-value=2.2e+02 Score=25.44 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=25.3
Q ss_pred HHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011612 162 LTRQIIAEAKE-SFDNQLKIQKLKDTIFAVNEQLTKAKKQG 201 (481)
Q Consensus 162 ~~~~~~~~~k~-~~d~~~~~~kl~~~~~~~ee~~~~~~~q~ 201 (481)
+++..+..+++ ..|......+.|+....+++-++.+--|+
T Consensus 49 r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~s 89 (108)
T PRK10132 49 KAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCS 89 (108)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 34455666664 34444456677888888888888654443
No 38
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=34.17 E-value=3.7e+02 Score=30.97 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011612 155 EVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQ 200 (481)
Q Consensus 155 ~~~~~~~~~~~~~~~~k~~~d~~~~~~kl~~~~~~~ee~~~~~~~q 200 (481)
+.+.+|+...+.|.++|.- ...|+--|.+++.+.+.++.+
T Consensus 111 ~~n~kiEelk~~i~~~q~e------L~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 111 EINTKIEELKRLIPQKQLE------LSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHhHHH------HHHHHhHHHHHHHHHHHHHhh
Confidence 4566778888888877753 557777777777777665544
No 39
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=31.27 E-value=2.9e+02 Score=22.50 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=23.3
Q ss_pred ccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHh
Q 011612 264 SVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFK 299 (481)
Q Consensus 264 sVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~ 299 (481)
.-++.|+..... ....+.|++++.+.+....+..
T Consensus 13 ~~~l~s~~~~~~--~~~~i~i~~~~~~~~~~~~~~~ 46 (156)
T cd00761 13 ERCLESLLAQTY--PNFEVIVVDDGSTDGTLEILEE 46 (156)
T ss_pred HHHHHHHHhCCc--cceEEEEEeCCCCccHHHHHHH
Confidence 457788877764 3477888999887766555443
No 40
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=30.79 E-value=2.2e+02 Score=23.77 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=21.8
Q ss_pred hhcchH-HHHHHHHHHHHHHHHHHHHHH
Q 011612 172 ESFDNQ-LKIQKLKDTIFAVNEQLTKAK 198 (481)
Q Consensus 172 ~~~d~~-~~~~kl~~~~~~~ee~~~~~~ 198 (481)
+-||.+ .+..++|+-|.++|.++....
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 448875 588999999999999987543
No 41
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=30.57 E-value=3.1e+02 Score=28.82 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhhHHhhhcchhhhhhhccCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHhh-cch
Q 011612 98 AYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKES-FDN 176 (481)
Q Consensus 98 ay~~~a~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~d~ 176 (481)
|+..++-+|. ++++...+..+|++.-++...+ ..--..|+.+.+++|+.++.+|..- ++.
T Consensus 44 a~~~is~~l~----~~~~~L~q~~~n~~~g~s~lqt---------------ae~aL~~~~~~lqrirelavqaan~t~s~ 104 (360)
T COG1344 44 AGLAIALRLR----SQIRGLSQAKDNAQDGISKLQT---------------AEGALSEISKILQRIKELAVQAANGTLSD 104 (360)
T ss_pred HHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHccCCCCH
Confidence 5666777777 6666666777777766552222 2334668888999999999999863 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011612 177 QLKIQKLKDTIFAVNEQLTKAKKQGAF 203 (481)
Q Consensus 177 ~~~~~kl~~~~~~~ee~~~~~~~q~~~ 203 (481)
.. -.++..-+..+-|++...-.+..|
T Consensus 105 ~d-r~~iq~Ei~~l~~el~~iantt~f 130 (360)
T COG1344 105 AD-RAAIQKEIEQLLDELDNIANTTSF 130 (360)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhcccC
Confidence 32 235555666777777654444434
No 42
>PRK04654 sec-independent translocase; Provisional
Probab=30.04 E-value=2.3e+02 Score=28.37 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=25.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 011612 144 IDESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVN 191 (481)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~d~~~~~~kl~~~~~~~e 191 (481)
++|+=++++.+.+-.-|++++..+..+|+-.+.......||..++..+
T Consensus 20 ~GPerLPe~aRtlGk~irk~R~~~~~vk~El~~El~~~ELrk~l~~~~ 67 (214)
T PRK04654 20 LGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQ 67 (214)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455555666666666666666666666654333333334444444333
No 43
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=29.99 E-value=34 Score=34.05 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=12.6
Q ss_pred cCCCCeEEEEEcceeeccCchHHH
Q 011612 376 YPKLHRILFLDDDIVVQRDLTGLW 399 (481)
Q Consensus 376 lP~ldKVLYLD~DvIV~~DLseLw 399 (481)
+|+.+=|+|||+|.+|...=-+|-
T Consensus 74 ~P~~~wv~~lD~Dali~n~~~~L~ 97 (239)
T PF05637_consen 74 YPEAEWVWWLDSDALIMNPDFSLE 97 (239)
T ss_dssp -TT-SEEEEE-TTEEE--------
T ss_pred CCCCCEEEEEcCCeEEEecccccc
Confidence 388999999999999987555543
No 44
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=29.09 E-value=2e+02 Score=23.90 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHH
Q 011612 148 ILRQFEKEVKERIKLTRQIIAEAKES-FDNQLKIQKLKDTIFAVNEQ 193 (481)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~k~~-~d~~~~~~kl~~~~~~~ee~ 193 (481)
++..+.+++.+..+.+..++.++++. -|.+.+.+++..+..+.++=
T Consensus 34 ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~ 80 (90)
T PF06103_consen 34 TIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADL 80 (90)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35667778888888888888888874 66677777777666665543
No 45
>PF08535 KorB: KorB domain; InterPro: IPR013741 This entry contains several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This domain includes the DNA-binding HTH motif []. ; PDB: 1R71_C.
Probab=27.68 E-value=3.2e+02 Score=22.89 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=30.7
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhhHHhhhcchhhhhhhccCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011612 101 SYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKE 172 (481)
Q Consensus 101 ~~a~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 172 (481)
.||++++-..+ ..++.+. |+.-|..=.-+.++|...+..++..|.+-.++.-..++.++..+++
T Consensus 8 eIA~~lGks~s-------~Vs~~l~-Ll~lP~~i~~~v~~g~~~~~~a~~~L~~~~~~~~~~~~~~v~~~~~ 71 (93)
T PF08535_consen 8 EIAKRLGKSRS-------WVSNHLA-LLDLPEEIKELVRSGRISDIRALYELRKLAEKNPEEVEALVAKAKE 71 (93)
T ss_dssp HHHHHTT--HH-------HHHHHHG-GGS--HHHHHHHHTTS---HHHHHHHHHHHHH-HHHHHHHH-HSTT
T ss_pred HHHHHHCCCHH-------HHHHHHH-HHcCCHHHHHHHHcCCCchHHHHHHHHHHHHhCHHHHHHHHHHhcc
Confidence 46777765333 3333333 4455555444445554555666666666666666677777744443
No 46
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.30 E-value=5.2e+02 Score=25.22 Aligned_cols=120 Identities=13% Similarity=0.220 Sum_probs=58.4
Q ss_pred CCCcchHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhH----------HHHHHHHhhhhHHhhhcchhhhhhhccCCCcCc
Q 011612 76 DPLKPRLDQIRKQADDHRALAMAYASYARKLKLENSK----------LVRIFADLSRNYTDLITKPTYQALMQSDSLTID 145 (481)
Q Consensus 76 ~~~~~~~~~~~~~~~d~~~~~~ay~~~a~~~~~~~~~----------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (481)
+.+..|++-+.|.-+--+...++|+..-+.+.-.+.. -.-.+..++.-++++.. +...|.+....+-
T Consensus 12 ~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~---~~~~L~~q~~~~i 88 (200)
T cd07603 12 SELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNN---FHTILLDQAQRTV 88 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3456788888888777777777777644432211110 01112222222222211 1222222211111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH------HHHHHHHHHHHHHHHHHHH
Q 011612 146 ESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKI------QKLKDTIFAVNEQLTKAKK 199 (481)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~d~~~~~------~kl~~~~~~~ee~~~~~~~ 199 (481)
-.-+.+|.++=-..+|..+.-..++.+.||....- .| ...+...++++..+++
T Consensus 89 ~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K-~~~~~Ea~~~L~~~Rk 147 (200)
T cd07603 89 STQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPRSK-PQEAEEATNILTATRS 147 (200)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHH
Confidence 11224444444456777777788888878865431 13 4456666666665554
No 47
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=25.50 E-value=2.4e+02 Score=25.58 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=31.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhh
Q 011612 174 FDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAA 209 (481)
Q Consensus 174 ~d~~~~~~kl~~~~~~~ee~~~~~~~q~~~~~~laa 209 (481)
|-...-..-||..|..+||+.....+....|..+++
T Consensus 63 fAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 63 FAVREEVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 555566788999999999999999999999999888
No 48
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.38 E-value=3.3e+02 Score=29.23 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 011612 159 RIKLTRQIIAEAKES-FDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSL 206 (481)
Q Consensus 159 ~~~~~~~~~~~~k~~-~d~~~~~~kl~~~~~~~ee~~~~~~~q~~~~~~ 206 (481)
++.....+++.-|.. -+-..-.+||++|.+.+|+|+....++...|..
T Consensus 226 eme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 226 EMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 333333344444432 233555789999999999999999888887653
No 49
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=24.95 E-value=48 Score=33.18 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=20.5
Q ss_pred hhhhhcCCCCeEEEEEcceeeccC
Q 011612 371 YLPEMYPKLHRILFLDDDIVVQRD 394 (481)
Q Consensus 371 ~LPeIlP~ldKVLYLD~DvIV~~D 394 (481)
.+..+||+.+=||+||+|+-|...
T Consensus 34 vva~~L~~~~~vlflDaDigVvNp 57 (222)
T PF03314_consen 34 VVAKILPEYDWVLFLDADIGVVNP 57 (222)
T ss_pred HHHHHhccCCEEEEEcCCceeecC
Confidence 456788999999999999998864
No 50
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=24.47 E-value=7.2e+02 Score=24.86 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=33.9
Q ss_pred cCchhhHHHHHHHHHHHHHHHH-------HH---HHHHHhhcc-hHHHHHHHHHHHHHHHHHHHH
Q 011612 143 TIDESILRQFEKEVKERIKLTR-------QI---IAEAKESFD-NQLKIQKLKDTIFAVNEQLTK 196 (481)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~k~~~d-~~~~~~kl~~~~~~~ee~~~~ 196 (481)
+++++-+++|..++...+.... .. |.-|++..| +.-+|+|+-.++..+|+++-.
T Consensus 101 ~~~~~e~~~L~~~~~~fL~~v~~~t~~~~~~L~eI~mAqdFQDLTGQvI~kVi~~v~~vE~~L~~ 165 (214)
T PRK11166 101 PIELADARELVTDTRAFLADVPEHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIERQLLM 165 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHccchHhHhHHHHHHHHHHHHHHHHHHH
Confidence 5565556666555554444333 22 234444456 346899999999999999863
No 51
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.78 E-value=6.9e+02 Score=24.54 Aligned_cols=121 Identities=16% Similarity=0.204 Sum_probs=60.4
Q ss_pred CCCcchHHHHHHhHHHHHHHHHHHHHHHHHhhhhhh--------HHH-----HHHHHhhhhHHhhhcchhhhhhhccCCC
Q 011612 76 DPLKPRLDQIRKQADDHRALAMAYASYARKLKLENS--------KLV-----RIFADLSRNYTDLITKPTYQALMQSDSL 142 (481)
Q Consensus 76 ~~~~~~~~~~~~~~~d~~~~~~ay~~~a~~~~~~~~--------~~~-----r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (481)
+.+++|++-+.|..+--+.=.+.|+..-+.+.-.+. ..+ ..+..++.-|+++.+ +...|.+...
T Consensus 11 ~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~---~~~~L~~q~~ 87 (202)
T cd07606 11 DELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGS---YKEVLRSQVE 87 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 346678888888777655544555443333221111 111 134445555555533 3444444422
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-HHHHH----H-HHHHHHHHHHHHHHH
Q 011612 143 TIDESILRQFEKEVKERIKLTRQIIAEAKESFDNQL-KIQKL----K-DTIFAVNEQLTKAKK 199 (481)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~d~~~-~~~kl----~-~~~~~~ee~~~~~~~ 199 (481)
..--.-+.+|.++=-..+|..+.-..++.+.||.+. +-..| | ..+...++++...|+
T Consensus 88 ~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~~l~~~R~ 150 (202)
T cd07606 88 HMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEEDLGTTRS 150 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHH
Confidence 221122344555444456667777777777777642 21111 1 356667777766655
No 52
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=23.50 E-value=5.6e+02 Score=25.02 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=37.5
Q ss_pred cCchh-hHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHH
Q 011612 143 TIDES-ILRQFEKEVKERIKLTRQIIAEAKES-FDNQLKIQKLKDTIFAVNEQLTKAKK 199 (481)
Q Consensus 143 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~-~d~~~~~~kl~~~~~~~ee~~~~~~~ 199 (481)
.-||. ++.|+..++++.|..+++.++++... --.......+...+...|+++..+-+
T Consensus 22 ~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 22 AEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677 78999999999999999988887643 11223344455555555666555444
No 53
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=23.46 E-value=1.3e+03 Score=27.30 Aligned_cols=80 Identities=15% Similarity=0.079 Sum_probs=45.0
Q ss_pred CCcCchhhHHHHHHHHHHH---HHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhccCCccc
Q 011612 141 SLTIDESILRQFEKEVKER---IKLTRQIIAEAKES-FDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKSIPKSL 216 (481)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~-~d~~~~~~kl~~~~~~~ee~~~~~~~q~~~~~~laa~~~Pk~l 216 (481)
+..++...-.++...+-+. |..|.+.+..+++. -.-.....+|+.....++..++.+|++=...-+=. =+-+
T Consensus 219 ~~~lg~~i~~~l~~~~~~~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~~-C~~~--- 294 (806)
T PF05478_consen 219 GSLLGGDIQDQLGSNVYPALDSILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQDL-CTNR--- 294 (806)
T ss_pred cchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCh---
Confidence 3344444444444444333 44444466666653 34455677888888888888888877655433221 2222
Q ss_pred cchhhhch
Q 011612 217 HCLAMRLM 224 (481)
Q Consensus 217 HCL~~rLt 224 (481)
.|..++-.
T Consensus 295 ~C~~i~~~ 302 (806)
T PF05478_consen 295 ECNSILSS 302 (806)
T ss_pred hhHHHHHh
Confidence 78877543
No 54
>PRK01919 tatB sec-independent translocase; Provisional
Probab=22.81 E-value=3.8e+02 Score=25.94 Aligned_cols=53 Identities=9% Similarity=0.185 Sum_probs=37.2
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Q 011612 143 TIDESILRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLT 195 (481)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~d~~~~~~kl~~~~~~~ee~~~ 195 (481)
-++|+=++++.+.+-.-+++++..+..+|+..+-..-...|+.+...+|+.++
T Consensus 19 V~GPekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~e~dElrk~~~~~e~~~~ 71 (169)
T PRK01919 19 VIGPERLPRVARTAGALFGRAQRYINDVKAEVSREIELDELRKMKTDFESAAR 71 (169)
T ss_pred eeCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 46777788888888888888888888888765555445566666555554333
No 55
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=22.80 E-value=2e+02 Score=29.73 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=13.2
Q ss_pred CCccccchhhhchHHHhcCCc
Q 011612 212 IPKSLHCLAMRLMEERIAHPE 232 (481)
Q Consensus 212 ~Pk~lHCL~~rLt~ey~~~~~ 232 (481)
+|+...=-.+|...|-.+|.-
T Consensus 272 L~~~~e~~l~rivQEaltN~~ 292 (365)
T COG4585 272 LPPEAEDALFRIVQEALTNAI 292 (365)
T ss_pred CChhHHHHHHHHHHHHHHHHH
Confidence 455555566777777776654
No 56
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.57 E-value=37 Score=35.92 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=18.4
Q ss_pred hcCCCCcccccchhhccHHHHHhh
Q 011612 435 KFNPKACAWAYGMNFFDLDAWRRE 458 (481)
Q Consensus 435 ~f~~~~cyFNsGVmLiDL~kWR~~ 458 (481)
++....+||||||.+|.-....++
T Consensus 186 yv~sG~y~WNSGmF~Fra~~~l~e 209 (333)
T COG0836 186 YVESGEYLWNSGMFLFRASVFLEE 209 (333)
T ss_pred HHHcCceEeeccceEEEHHHHHHH
Confidence 456677999999999887665543
No 57
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=21.70 E-value=1.7e+02 Score=30.37 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.7
Q ss_pred hhhcCCCCeEEEEEcceeeccCch
Q 011612 373 PEMYPKLHRILFLDDDIVVQRDLT 396 (481)
Q Consensus 373 PeIlP~ldKVLYLD~DvIV~~DLs 396 (481)
..++.++|-+.++|+|+++++++.
T Consensus 118 ~~~~~e~DYlF~~dvd~~F~~~ig 141 (271)
T cd02515 118 DRIGHEVDYLFCMDVDMVFQGPFG 141 (271)
T ss_pred HhhcccCCEEEEeeCCceEeecCC
Confidence 345667999999999999999987
No 58
>PF12607 DUF3772: Protein of unknown function (DUF3772); InterPro: IPR022249 This domain family is found in bacteria, and is approximately 60 amino acids in length. The family is found in association with PF00924 from PFAM.
Probab=21.63 E-value=3e+02 Score=21.91 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhhHHhhhcchhhhhhhccCCCcCchhhHHHHHHHHHHHHHHHHHHH
Q 011612 98 AYASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQII 167 (481)
Q Consensus 98 ay~~~a~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (481)
.-..-|.-|.-+++++.|. .+. .+++.-.+.+++|..-.++..+..+-+.++....
T Consensus 5 ~~~~~A~~L~~~I~~~rR~--~~~------------~~L~~r~~SpL~P~~W~~~~~~~~~d~~rl~~~~ 60 (64)
T PF12607_consen 5 EAKVRADQLIDQIDNLRRE--RFT------------SQLLERSPSPLNPAFWSPAAAELPDDLRRLGAFV 60 (64)
T ss_pred HHHhHHHHHHHHHHHHHHH--HHH------------HHHHHcCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 3334466666666666663 222 4444445779999888888777777666655443
No 59
>PRK15383 type III secretion system protein; Provisional
Probab=21.59 E-value=43 Score=34.30 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.1
Q ss_pred CeEEEEEcceeeccCchHHHccC
Q 011612 380 HRILFLDDDIVVQRDLTGLWKID 402 (481)
Q Consensus 380 dKVLYLD~DvIV~~DLseLw~iD 402 (481)
+-+||||+|+++.+-|.-|+--|
T Consensus 220 ~GCIYLD~DMilT~KLG~ly~PD 242 (335)
T PRK15383 220 GGCIYLDADMLLTDKLGTLYLPD 242 (335)
T ss_pred CceEEeecceeeecccccEEcCC
Confidence 46999999999999999998544
No 60
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=21.52 E-value=44 Score=34.27 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.1
Q ss_pred CeEEEEEcceeeccCchHHHccC
Q 011612 380 HRILFLDDDIVVQRDLTGLWKID 402 (481)
Q Consensus 380 dKVLYLD~DvIV~~DLseLw~iD 402 (481)
+-+||||+|+++.+-|.-|+--|
T Consensus 212 ~GCIYLD~DMilT~KLG~ly~PD 234 (326)
T PRK15382 212 EGCIYLDADMIITDKLGVLYAPD 234 (326)
T ss_pred CceEEeecceeeecccccEEcCC
Confidence 46999999999999999998544
No 61
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.26 E-value=9.9e+02 Score=25.25 Aligned_cols=69 Identities=10% Similarity=0.140 Sum_probs=44.5
Q ss_pred CCcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc----h-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhcc
Q 011612 141 SLTIDESILRQFEKEVKERIKLTRQIIAEAKESFD----N-----QLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAKS 211 (481)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~d----~-----~~~~~kl~~~~~~~ee~~~~~~~q~~~~~~laa~~ 211 (481)
.++-++.-.+++..++-.-+.+...+|..++..+. . .++..-+-..|+... ..+-++|+.||.+|-.+.
T Consensus 94 Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~~n~~~~la~~LQ~~s--~~fR~~Qs~YLK~l~~~e 171 (305)
T KOG0809|consen 94 DKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLLRKNAQGYLALQLQTLS--REFRGLQSKYLKRLRNRE 171 (305)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhchh
Confidence 44666777788888888888888888888887765 1 111122222233222 444578999999987654
No 62
>PRK15384 type III secretion system protein; Provisional
Probab=21.25 E-value=43 Score=34.33 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=20.1
Q ss_pred CeEEEEEcceeeccCchHHHccC
Q 011612 380 HRILFLDDDIVVQRDLTGLWKID 402 (481)
Q Consensus 380 dKVLYLD~DvIV~~DLseLw~iD 402 (481)
+-+||||+|+++.+-|.-|+--|
T Consensus 217 ~GCIYLDaDMilT~KLG~ly~PD 239 (336)
T PRK15384 217 SGCIYLDADMIITEKLGGIYIPD 239 (336)
T ss_pred CceEEeeccceeecccccEEcCC
Confidence 46999999999999999998544
No 63
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=20.97 E-value=7e+02 Score=28.52 Aligned_cols=31 Identities=23% Similarity=0.150 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhHH
Q 011612 92 HRALAMAYASYARKLKLENSKLVRIFADLSRNYT 125 (481)
Q Consensus 92 ~~~~~~ay~~~a~~~~~~~~~~~r~~~~~~~~~~ 125 (481)
|+.|..-=+.|||||. |+=+|+-+|+ +-++|
T Consensus 366 QLllmEERatIAReLH-DSiAQsLS~L--kiQvt 396 (574)
T COG3850 366 QLLLMEERATIARELH-DSIAQSLSFL--KIQVT 396 (574)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHH
Confidence 4445555577889987 3445666665 33444
No 64
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=20.84 E-value=3e+02 Score=26.11 Aligned_cols=124 Identities=19% Similarity=0.241 Sum_probs=63.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHhhhhHHhhhcchhhh------hhhccCCCcCchhhHHHHHHHH
Q 011612 85 IRKQADDHRALAMAYASYARKL--KLENSKLVRIFADLSRNYTDLITKPTYQ------ALMQSDSLTIDESILRQFEKEV 156 (481)
Q Consensus 85 ~~~~~~d~~~~~~ay~~~a~~~--~~~~~~~~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 156 (481)
+.|.+.+.+--+.-+..+|+++ +. ...++|.++++=..+. ||.+-+.. ..++ .+..+.+..++++.+++
T Consensus 28 ~ir~l~~l~~~~~d~~~iak~l~p~i-s~~ev~~sL~~L~~~g-li~k~~~g~y~~t~~~l~-~~~~~~~~avr~~h~q~ 104 (171)
T PF14394_consen 28 AIRELLPLMPFAPDPEWIAKRLRPKI-SAEEVRDSLEFLEKLG-LIKKDGDGKYVQTDKSLT-TSSEIPSEAVRSYHKQM 104 (171)
T ss_pred HHHHHhhcCCCCCCHHHHHHHhcCCC-CHHHHHHHHHHHHHCC-CeEECCCCcEEEecceee-CCCCCcHHHHHHHHHHH
Confidence 3445555554444566778887 43 3467787776666664 44544431 1122 23344444555554433
Q ss_pred HHHHHHHHHHHHH---HHhhcc------hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHhhc-cCCccccchhhhch
Q 011612 157 KERIKLTRQIIAE---AKESFD------NQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLIAAK-SIPKSLHCLAMRLM 224 (481)
Q Consensus 157 ~~~~~~~~~~~~~---~k~~~d------~~~~~~kl~~~~~~~ee~~~~~~~q~~~~~~laa~-~~Pk~lHCL~~rLt 224 (481)
-+. +...|.+ .+..|- +.....|++.+|...=.++. .++.+ +=|...+||+|.|.
T Consensus 105 ~~l---A~~al~~~p~~~R~~s~~T~~vs~~~~~ki~~~i~~fRk~i~----------~i~~~~~~~~~Vy~lN~qlF 169 (171)
T PF14394_consen 105 LEL---AQEALDRVPPEERDFSGLTMSVSREDYEKIKKEIREFRKKII----------AIAEEDKEPDRVYQLNIQLF 169 (171)
T ss_pred HHH---HHHHHHhCCccccceeeeEEEeCHHHHHHHHHHHHHHHHHHH----------HHHhcCCCCCeEEEEEEEEe
Confidence 222 1112221 111111 12234556655555544444 55666 77999999998874
No 65
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=20.82 E-value=4.7e+02 Score=23.48 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=38.9
Q ss_pred hhhHHhhhcchhhhhhhccCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHh-hcch-HHHHHHHHHHHHHHHHHHHHHH
Q 011612 121 SRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKE-SFDN-QLKIQKLKDTIFAVNEQLTKAK 198 (481)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~d~-~~~~~kl~~~~~~~ee~~~~~~ 198 (481)
-.+|++|+. ..+.+|.++|..-++. ..++. .++++++.+++. .-|. ..+.++-|+++..+|+-++.+-
T Consensus 14 ~~el~~L~d--~lEevL~ssg~~a~~e-~~~lR-------~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~P 83 (104)
T COG4575 14 LAELQELLD--TLEEVLKSSGSLAGDE-AEELR-------SKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENP 83 (104)
T ss_pred HHHHHHHHH--HHHHHHHhcccchhhH-HHHHH-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 334444433 2355666665444322 22222 334555555554 2333 3468899999999999888654
Q ss_pred HH
Q 011612 199 KQ 200 (481)
Q Consensus 199 ~q 200 (481)
=|
T Consensus 84 Wq 85 (104)
T COG4575 84 WQ 85 (104)
T ss_pred ch
Confidence 33
No 66
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=20.49 E-value=5.5e+02 Score=21.99 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=37.7
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHHHHHHHHHHHH
Q 011612 143 TIDESILRQFEKEVKERIKLTRQIIAEAKES---FDNQLKIQKLKDTIFAVNEQLTKAK 198 (481)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~---~d~~~~~~kl~~~~~~~ee~~~~~~ 198 (481)
+.+|+++ +.+...|+.++.-+.+|+++ .|. .+...=...|...|-|+..+|
T Consensus 25 smdp~~L----e~A~qAve~Ar~ql~~a~~~at~lD~-~Fl~~~~~~L~~~eHQL~Eak 78 (79)
T PF10819_consen 25 SMDPDQL----EHATQAVEDAREQLSQAKSHATGLDE-PFLQQSEQLLDDCEHQLDEAK 78 (79)
T ss_pred cCCHHHH----HHHHHHHHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHhc
Confidence 5665554 46788888899888888874 444 566666778888888888765
Done!