Query 011612
Match_columns 481
No_of_seqs 289 out of 1117
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 11:45:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 2.8E-32 9.6E-37 269.3 14.5 185 250-479 5-193 (276)
2 1g9r_A Glycosyl transferase; a 100.0 7.7E-31 2.6E-35 261.8 13.9 183 251-479 1-188 (311)
3 1ll2_A Glycogenin-1; protein-s 99.6 2E-15 6.8E-20 153.0 12.2 151 249-471 3-156 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.4 2E-13 7E-18 134.6 9.5 148 253-472 8-158 (263)
5 2l3l_A Tubulin-specific chaper 32.7 1E+02 0.0035 26.3 6.6 42 153-194 60-107 (111)
6 1kmi_Z CHEZ, chemotaxis protei 28.7 3.4E+02 0.012 25.4 10.2 53 143-195 101-164 (214)
7 3v1a_A Computational design, M 26.2 1.1E+02 0.0037 22.7 4.8 37 89-125 6-44 (48)
8 3v47_C Flagellin; innate immun 23.6 1.4E+02 0.0048 31.2 6.9 86 99-204 6-92 (425)
9 1fxk_C Protein (prefoldin); ar 15.9 4E+02 0.014 22.4 7.1 47 148-200 85-131 (133)
10 1yzm_A FYVE-finger-containing 15.7 2.9E+02 0.01 20.6 5.3 17 89-105 7-23 (51)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=99.98 E-value=2.8e-32 Score=269.28 Aligned_cols=185 Identities=14% Similarity=0.152 Sum_probs=131.0
Q ss_pred ceeEEEEecc-cc-ccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccccccchhH
Q 011612 250 LYHYAIFSDN-VL-AASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVL 327 (481)
Q Consensus 250 ~iHIai~sDN-vL-aasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~~Pvl 327 (481)
.+|||+++|+ ++ +++|+|+|++.|+++ ++++|||++++++.+..+.+.......+..|+++.+++ ++
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~--------- 73 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DL--------- 73 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HH---------
Confidence 4899999995 43 568999999999986 68999999999998877666655444567777776542 11
Q ss_pred HhhccccceeeeeccccccccccccccccCCCCCccHhhhHHhhhhhhcCC-CCeEEEEEcceeeccCchHHHccCCCCC
Q 011612 328 RQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPK-LHRILFLDDDIVVQRDLTGLWKIDMDGK 406 (481)
Q Consensus 328 ~ql~s~~~~~y~F~~~~~~~~~~~~~lk~r~p~yiS~~ty~Rf~LPeIlP~-ldKVLYLD~DvIV~~DLseLw~iDL~gk 406 (481)
|.+ .+..+++|..+|+||++|+++|+ ++||||||+|+||++||++||++|++|+
T Consensus 74 ------------~~~-------------~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~ 128 (276)
T 3tzt_A 74 ------------FSF-------------AKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDY 128 (276)
T ss_dssp -----------------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTS
T ss_pred ------------Hhc-------------CccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCC
Confidence 110 01124578999999999999995 9999999999999999999999999999
Q ss_pred EEEEEeccccc-hhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHccCccccCC
Q 011612 407 VNGAVETCFGS-FHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRLILIFNH 479 (481)
Q Consensus 407 viAAVeDc~~~-~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~d~~ly~~ 479 (481)
++|||+||... ..+....+ .+++..||||||||||||++||+.++++++++|++++..++.|+|
T Consensus 129 ~~aav~d~~~~~~~~~~~~~---------~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~~~D 193 (276)
T 3tzt_A 129 ILAAASHTGKTDMANNVNRI---------RLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLLLPD 193 (276)
T ss_dssp SEEEEEC-----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC--------
T ss_pred eEEEEEecccchHHHHHHHh---------cCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccccCCC
Confidence 99999999753 11111111 234446999999999999999999999999999999988777776
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=99.97 E-value=7.7e-31 Score=261.76 Aligned_cols=183 Identities=21% Similarity=0.312 Sum_probs=143.3
Q ss_pred eeEEEEecc-cc-ccccchhhh-cccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccccccchhH
Q 011612 251 YHYAIFSDN-VL-AASVVVNSA-VKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVL 327 (481)
Q Consensus 251 iHIai~sDN-vL-aasVvInSi-v~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~~Pvl 327 (481)
+|||+++|+ ++ +++|+|+|+ +.|++ .+++|||++++++.+..+.+.......+..|+++.++. +.
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~-~~--------- 68 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNP-ED--------- 68 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCG-GG---------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCH-HH---------
Confidence 699999995 43 567999999 99874 56999999999998877666655443456666655431 00
Q ss_pred HhhccccceeeeeccccccccccccccccC-CCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHccCCCCC
Q 011612 328 RQLESANLQRFYFENKLENATKDTTNMKFR-NPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGK 406 (481)
Q Consensus 328 ~ql~s~~~~~y~F~~~~~~~~~~~~~lk~r-~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~gk 406 (481)
|. +++ ...++|..+|+||++|++||+++||||||+|+||++||++||++|++|+
T Consensus 69 ------------~~-------------~~~~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~ 123 (311)
T 1g9r_A 69 ------------FA-------------GFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDN 123 (311)
T ss_dssp ------------GT-------------TSCCCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTC
T ss_pred ------------Hh-------------cCccccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCc
Confidence 00 011 1246889999999999999999999999999999999999999999999
Q ss_pred EEEEEeccccc-hhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHccCccccCC
Q 011612 407 VNGAVETCFGS-FHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVRLILIFNH 479 (481)
Q Consensus 407 viAAVeDc~~~-~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~d~~ly~~ 479 (481)
++|||+||... ...+...++ +.+..|||||||||||+++||+.++++++++|++.+.++..|+|
T Consensus 124 ~~aav~d~~~~~~~~~~~~~~---------~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~D 188 (311)
T 1g9r_A 124 WLGASIDLFVERQEGYKQKIG---------MADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQD 188 (311)
T ss_dssp SEEEEECHHHHTSTTHHHHTT---------CCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSHH
T ss_pred EEEEEeccchhhhHHHHHhcC---------CCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCccCC
Confidence 99999998642 111222222 33467999999999999999999999999999999887777665
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.61 E-value=2e-15 Score=153.03 Aligned_cols=151 Identities=10% Similarity=0.082 Sum_probs=102.5
Q ss_pred CceeEEEEecc-cc-ccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccccccchh
Q 011612 249 KLYHYAIFSDN-VL-AASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPV 326 (481)
Q Consensus 249 ~~iHIai~sDN-vL-aasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~~Pv 326 (481)
+..+|++++|+ ++ ++.|++.|+..|+++ ..++| +++++++.+..+.+.... . +++.++.....
T Consensus 3 ~~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~~~----~--~v~~v~~l~~~------- 67 (333)
T 1ll2_A 3 DQAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEIVF----D--EVITVDILDSG------- 67 (333)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHHC----S--EEEECCTTSTT-------
T ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHHhC----C--EEEEEeecCCc-------
Confidence 35678888874 54 567999999999876 45666 778899887766665442 1 23333211100
Q ss_pred HHhhccccceeeeeccccccccccccccc-cCCCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHccCCCC
Q 011612 327 LRQLESANLQRFYFENKLENATKDTTNMK-FRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDG 405 (481)
Q Consensus 327 l~ql~s~~~~~y~F~~~~~~~~~~~~~lk-~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~g 405 (481)
+.. ++. ..++ ....+|+||++|++ ++++||||||+|+||.+||.+||+++
T Consensus 68 -------------~~~----------~~~~~~~~--~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~--- 118 (333)
T 1ll2_A 68 -------------DSA----------HLTLMKRP--ELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE--- 118 (333)
T ss_dssp -------------STT----------HHHHHHCG--GGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC---
T ss_pred -------------chh----------hccccccc--chHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC---
Confidence 000 000 0112 23589999999995 78999999999999999999999987
Q ss_pred CEEEEEeccccchhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHc
Q 011612 406 KVNGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLV 471 (481)
Q Consensus 406 kviAAVeDc~~~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n 471 (481)
.+|||+|.+ | .+||||||||||+.. ++.++++++++.+
T Consensus 119 -~~aAv~d~~-----------~------------~~~fNsGvmlin~~~----~~~~~l~~~~~~~ 156 (333)
T 1ll2_A 119 -ELSAAPDPG-----------W------------PDCFNSGVFVYQPSV----ETYNQLLHVASEQ 156 (333)
T ss_dssp -SSEEEECSS-----------S------------TTSEEEEEEEECCCH----HHHHHHHHHHHHT
T ss_pred -ceeEEecCC-----------C------------CcceeeeEEEEeCCH----HHHHHHHHHHHhc
Confidence 478887741 1 269999999997753 3345666666654
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.43 E-value=2e-13 Score=134.64 Aligned_cols=148 Identities=11% Similarity=0.121 Sum_probs=99.3
Q ss_pred EEEEec-ccc-ccccchhhhcccCCCCCceEEEEEeCCCChHHHHHHHhhcCCCCceEEEEeeccccccccccchhHHhh
Q 011612 253 YAIFSD-NVL-AASVVVNSAVKNSKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLRQL 330 (481)
Q Consensus 253 Iai~sD-NvL-aasVvInSiv~Nsk~pe~ivFHIVTD~in~~amk~wf~~n~~~~a~I~V~~ie~f~~Ln~~~~Pvl~ql 330 (481)
+.+++| +++ ++.|++.|+..++++ ..+++ ++|++++.+..+.+... +. +++.++.....+ +.
T Consensus 8 vTl~td~~Yl~ga~vL~~SL~~~~s~-~~lvv-Lvt~~vs~~~~~~L~~~----~~--~vi~V~~l~~~~----~~---- 71 (263)
T 3u2u_A 8 VTLTTNDAYAKGALVLGSSLKQHRTT-RRLVV-LATPQVSDSMRKVLETV----FD--EVIMVDVLDSGD----SA---- 71 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHH----SS--EEEECCCCCCCC----HH----
T ss_pred EEEEECHHHHHHHHHHHHHHHHhCCC-CCEEE-EecCCCCHHHHHHHHHc----CC--eEEEeeecCCcc----hh----
Confidence 345566 454 567999999999875 44544 67888988776665543 12 233332111100 00
Q ss_pred ccccceeeeeccccccccccccccc-cCCCCCccHhhhHHhhhhhhcCCCCeEEEEEcceeeccCchHHHccCCCCCEEE
Q 011612 331 ESANLQRFYFENKLENATKDTTNMK-FRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQRDLTGLWKIDMDGKVNG 409 (481)
Q Consensus 331 ~s~~~~~y~F~~~~~~~~~~~~~lk-~r~p~yiS~~ty~Rf~LPeIlP~ldKVLYLD~DvIV~~DLseLw~iDL~gkviA 409 (481)
+.+ +.+|.+ ..+|.|+.++++.+ ++||||||+|++|.+||.+||++| .+|
T Consensus 72 ----------------------~~~~~~rp~~--~~~~~kl~~~~l~~-~~~vlylD~D~~v~~~~~~Lf~~~----~~a 122 (263)
T 3u2u_A 72 ----------------------HLTLMKRPEL--GVTLTKLHCWSLTQ-YSKCVFMDADTLVLANIDDLFDRE----ELS 122 (263)
T ss_dssp ----------------------HHHHTTCTTG--GGGGGGGGGGGCTT-CSEEEEECTTEEECSCCGGGGGSC----SSE
T ss_pred ----------------------hhhhhcCcch--hHHhHHHHhccccC-cceEEEEcCCEeeccCHHHHhCCC----cce
Confidence 000 112322 47899999999875 899999999999999999999987 478
Q ss_pred EEeccccchhhhhhccCCCchhhhhhcCCCCcccccchhhccHHHHHhhchHHHHHHHHHHcc
Q 011612 410 AVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLVR 472 (481)
Q Consensus 410 AVeDc~~~~~r~~~~Lnfs~P~i~~~f~~~~cyFNsGVmLiDL~kWR~~nit~k~~~~~~~n~ 472 (481)
||+|.+ | .+||||||||||++ .++.++++++++.+.
T Consensus 123 A~~d~~-----------~------------~~~fNsGv~li~p~----~~~~~~l~~~~~~~~ 158 (263)
T 3u2u_A 123 AAPDPG-----------W------------PDCFNSGVFVYQPS----VETYNQLLHLASEQG 158 (263)
T ss_dssp EEECTT-----------S------------TTSEEEEEEEECCC----HHHHHHHHHHHHHHC
T ss_pred EeccCC-----------C------------CccccCeEEEEccc----HHHHHHHHHHHHhcC
Confidence 887742 1 25899999999985 466777777777543
No 5
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=32.72 E-value=1e+02 Score=26.28 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hcc---hHHHHHHHHHHHHHHHHHH
Q 011612 153 EKEVKERIKLTRQIIAEAKE---SFD---NQLKIQKLKDTIFAVNEQL 194 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~k~---~~d---~~~~~~kl~~~~~~~ee~~ 194 (481)
..++-..|..|...+..|-. .|| |+..++.|++.+..+..++
T Consensus 60 ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~r~~l 107 (111)
T 2l3l_A 60 LEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGL 107 (111)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677799999999999987 399 5667777777776655553
No 6
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=28.72 E-value=3.4e+02 Score=25.44 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=32.0
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHH----------HHHHHhhcc-hHHHHHHHHHHHHHHHHHHH
Q 011612 143 TIDESILRQFEKEVKERIKLTRQI----------IAEAKESFD-NQLKIQKLKDTIFAVNEQLT 195 (481)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~k~~~d-~~~~~~kl~~~~~~~ee~~~ 195 (481)
+++++-++++..+.+..+...... |.-|++..| ..-+|+|.-.++..+|+++.
T Consensus 101 ~~~~~~~~~l~~~~~~~l~~v~~~~~~~~~~l~eIm~AqdFQDLTGQ~I~KVi~lv~~vE~~L~ 164 (214)
T 1kmi_Z 101 PIDLADARELVTDTRQFLADVPAHTSFTNAQLLKIMMAQDFQDLTGQVIKRMMDVIQEIERQLL 164 (214)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665555444444222 233333345 23578888888889998866
No 7
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=26.21 E-value=1.1e+02 Score=22.71 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHhhhhHH
Q 011612 89 ADDHRALAMAYASYARKLK--LENSKLVRIFADLSRNYT 125 (481)
Q Consensus 89 ~~d~~~~~~ay~~~a~~~~--~~~~~~~r~~~~~~~~~~ 125 (481)
|.+|+++.+.|...||+-. -|.+.+.+|..+|.+++.
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 6789999999999998821 244555555555555554
No 8
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=23.62 E-value=1.4e+02 Score=31.22 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=41.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhhHHhhhcchhhhhhhccCCCcCchhhHHHHHHHHHHHHHHHHHHHHHHHh-hcchH
Q 011612 99 YASYARKLKLENSKLVRIFADLSRNYTDLITKPTYQALMQSDSLTIDESILRQFEKEVKERIKLTRQIIAEAKE-SFDNQ 177 (481)
Q Consensus 99 y~~~a~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~d~~ 177 (481)
..+|+-+|. +|+|...+..+|++.-++... +.+--..++.+.|.+|+.+..+|.. .+...
T Consensus 6 GlAIa~~lr----sqi~gl~Qa~rN~~dgiS~lq---------------tAEgAL~~i~~iLqRmRELaVQAaNgT~s~~ 66 (425)
T 3v47_C 6 PQAIANRFT----SNIKGLTQASRNANDGISIAQ---------------TTEGALNEINNNLQRVRELSVQATNGTNSDS 66 (425)
T ss_dssp ----------------------CHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 556677776 778888888888887655111 1233355788899999999999886 34432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011612 178 LKIQKLKDTIFAVNEQLTKAKKQGAFS 204 (481)
Q Consensus 178 ~~~~kl~~~~~~~ee~~~~~~~q~~~~ 204 (481)
. -..+.+-+..+-+|+...-.+..|.
T Consensus 67 D-R~aIq~Ei~qL~~eI~~Ian~T~fN 92 (425)
T 3v47_C 67 D-LKSIQDEIQQRLEEIDRVSNQTQFN 92 (425)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHCEET
T ss_pred H-HHHHHHHHHHHHHHHHHHHhhCCcC
Confidence 2 2345555556666666544444443
No 9
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=15.86 E-value=4e+02 Score=22.40 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 011612 148 ILRQFEKEVKERIKLTRQIIAEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQ 200 (481)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~k~~~d~~~~~~kl~~~~~~~ee~~~~~~~q 200 (481)
+..+-.+-.+++++.++..+..-++. +.++++.+..++++++....|
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~------l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGEN------LRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhc
Confidence 44556666677777777777766664 778899999999998876654
No 10
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=15.70 E-value=2.9e+02 Score=20.60 Aligned_cols=17 Identities=6% Similarity=-0.046 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011612 89 ADDHRALAMAYASYARK 105 (481)
Q Consensus 89 ~~d~~~~~~ay~~~a~~ 105 (481)
|.+|+.+.+.|...||+
T Consensus 7 L~EQ~~~I~~~I~qAk~ 23 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKA 23 (51)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67899999999999987
Done!