BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011613
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NVL|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From
Trypanosoma Brucei
pdb|3NVL|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From
Trypanosoma Brucei
Length = 571
Score = 575 bits (1481), Expect = e-164, Method: Compositional matrix adjust.
Identities = 282/482 (58%), Positives = 365/482 (75%), Gaps = 6/482 (1%)
Query: 1 MGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLS 58
MGNSEVGHNALGAGR+ QGA LVD AL SG+I+ EG+ Y+ +F TLHLIGLLS
Sbjct: 91 MGNSEVGHNALGAGRVVLQGASLVDDALESGEIFTSEGYRYLHGAFSQPGRTLHLIGLLS 150
Query: 59 DGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKG 118
DGGVHSR +Q+ +LK A GAKRIR+H L DGRDV D +S F + +E+ LA+LR G
Sbjct: 151 DGGVHSRDNQVYQILKHAGANGAKRIRVHALYDGRDVPDKTSFKFTDELEEVLAKLREGG 210
Query: 119 VDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQ-PNAN 177
DA+IASGGGRM+VTMDRYE DW +V+RGW AQVLGE FKSA EA+ K RE+ N +
Sbjct: 211 CDARIASGGGRMFVTMDRYEADWSIVERGWRAQVLGEG-RAFKSAREALTKFREEDANIS 269
Query: 178 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIR 237
DQY PPFVI ++G+ +G I DGDAV+ FNFR DR++ +++A E E+FDKF+RVR PK+R
Sbjct: 270 DQYYPPFVIAGDDGRPIGTIEDGDAVLCFNFRGDRVIEMSRAFEEEEFDKFNRVRLPKVR 329
Query: 238 YAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRS 297
YAGM++YDG+L +P+++LV PP++ RTS EYL+ +G FA SET KFGHVT+FWNGNRS
Sbjct: 330 YAGMMRYDGDLGIPNNFLVPPPKLTRTSEEYLIGSGCNIFALSETQKFGHVTYFWNGNRS 389
Query: 298 GYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGH 357
G E + EIPSD + FN +P MK+ EI + A AI S ++ +R+N PN DMVGH
Sbjct: 390 GKLSEERETFCEIPSDR-VQFNQKPLMKSKEITDAAVDAIKSGKYDMIRINYPNGDMVGH 448
Query: 358 TGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLL-KDGN 416
TGD++AT+ + +A D++++ + +A++ V G++L+TADHGN++DMV+R+K G+P+ +GN
Sbjct: 449 TGDLKATITSLEAVDQSLQRLKEAVDSVNGVFLITADHGNSDDMVQRDKKGKPVRDAEGN 508
Query: 417 IQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLI 476
+ LTSHTL PVP+ IGG GL V+ RTDLP GLANV ATFINL G+EAPSDYEPSLI
Sbjct: 509 LMPLTSHTLAPVPVFIGGAGLDPRVQMRTDLPRAGLANVTATFINLMGFEAPSDYEPSLI 568
Query: 477 EV 478
EV
Sbjct: 569 EV 570
>pdb|3IGY|B Chain B, Crystal Structures Of Leishmania Mexicana Phosphoglycerate
Mutase At High Cobalt Concentrations
pdb|3IGZ|B Chain B, Crystal Structures Of Leishmania Mexicana Phosphoglycerate
Mutase At Low Cobalt Concentration
Length = 561
Score = 561 bits (1446), Expect = e-160, Method: Compositional matrix adjust.
Identities = 283/483 (58%), Positives = 360/483 (74%), Gaps = 8/483 (1%)
Query: 1 MGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF--ETGTLHLIGLLS 58
MGNSEVGHNALGAGR+ QGA LVD A+ SG+IY EG+ Y+ +F E TLHLIGLLS
Sbjct: 72 MGNSEVGHNALGAGRVALQGASLVDDAIKSGEIYTGEGYRYLHGAFSKEGSTLHLIGLLS 131
Query: 59 DGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKG 118
DGGVHSR +Q+ +++ A + GAKRIR+H L DGRDV DGSS F + +E LA++R G
Sbjct: 132 DGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTDELEAVLAKVRQNG 191
Query: 119 VDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQ-PNAN 177
DA IASGGGRM+VTMDRY+ DW +V+RGW AQVLG+A H F SA EA+ RE+ P
Sbjct: 192 CDAAIASGGGRMFVTMDRYDADWSIVERGWRAQVLGDARH-FHSAKEAITTFREEDPKVT 250
Query: 178 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIR 237
DQY PPF++VDE K +G I DGDAV+ NFR DR++ + +A E EDF+KFDRVR PK+R
Sbjct: 251 DQYYPPFIVVDEQDKPLGTIEDGDAVLCVNFRGDRVIEMTRAFEDEDFNKFDRVRVPKVR 310
Query: 238 YAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRS 297
YAGM++YDG+L +P+++LV PP++ R S EYL +G+ FACSET KFGHVT+FWNGNRS
Sbjct: 311 YAGMMRYDGDLGIPNNFLVPPPKLTRVSEEYLCGSGLNIFACSETQKFGHVTYFWNGNRS 370
Query: 298 GYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGH 357
G D E + E+PSD + FN +P+M++ I E A +A+ S ++ VR+N PN DMVGH
Sbjct: 371 GKIDEKHETFKEVPSDR-VQFNEKPRMQSAAITEAAIEALKSGMYNVVRINFPNGDMVGH 429
Query: 358 TGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNI 417
TGD++AT+ +A DE++ + DA++ V G+Y+VTADHGN++DM +R+K G+P +KDGN
Sbjct: 430 TGDLKATITGVEAVDESLAKLKDAVDSVNGVYIVTADHGNSDDMAQRDKKGKP-MKDGNG 488
Query: 418 QV--LTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSL 475
V LTSHTL PVP+ IGG GL V RTDLP GLANV ATFINL G+EAP DYEPSL
Sbjct: 489 NVLPLTSHTLSPVPVFIGGAGLDPRVAMRTDLPAAGLANVTATFINLLGFEAPEDYEPSL 548
Query: 476 IEV 478
I V
Sbjct: 549 IYV 551
>pdb|1EJJ|A Chain A, Crystal Structural Analysis Of Phosphoglycerate Mutase
Cocrystallized With 3-Phosphoglycerate
pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Bacillus
Stearothermophilus Complexed With 2-Phosphoglycerate
pdb|1O98|A Chain A, 1.4a Crystal Structure Of Phosphoglycerate Mutase From
Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 263 bits (672), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 171/476 (35%), Positives = 268/476 (56%), Gaps = 38/476 (7%)
Query: 1 MGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGT-LHLIG 55
MGNSEVGH +GAGRI Q +++A+ G+ ++E F N++K + GT LHL G
Sbjct: 59 MGNSEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVK---QHGTSLHLFG 115
Query: 56 LLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELR 115
LLSDGGVHS + L LL+ A++ G KR+ +H DGRDV ++ +++ +++ + E
Sbjct: 116 LLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEY- 174
Query: 116 GKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPN 175
GV +IA+ GR Y +MDR + WD V++ + A V GE P ++ +E ++ +
Sbjct: 175 --GV-GEIATLSGRYY-SMDR-DKRWDRVEKAYRAMVYGEGP-TYRDPLECIEDSYKH-G 227
Query: 176 ANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFP 234
D+++ P VIV E+G+ V I D DA++ +NFR DR + ++ EDF +FDR + P
Sbjct: 228 IYDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHP 287
Query: 235 KIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNG 294
K + L + E + + P +D T GE L +G+R +ET K+ HVTFF +G
Sbjct: 288 KHLFFVCLTHFSE-TVAGYVAFKPTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSG 346
Query: 295 NRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDM 354
R F E+ + I S T++++P+M A E+ + K I + ++ + +N N DM
Sbjct: 347 GREEEFPG--EDRILINSPKVPTYDLKPEMSAYEVTDALLKEIEADKYDAIILNYANPDM 404
Query: 355 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKD 414
VGH+G +E T+ A +A DE + ++DAI GGI ++TADHGNA+++ L D
Sbjct: 405 VGHSGKLEPTIKAVEAVDECLGKVVDAILAKGGIAIITADHGNADEV---------LTPD 455
Query: 415 GNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 470
G Q T+HT PVP+ + G +K R G L ++A T ++L G P +
Sbjct: 456 GKPQ--TAHTTNPVPVIVTKKG----IKLRD---GGILGDLAPTMLDLLGLPQPKE 502
>pdb|1O99|A Chain A, Crystal Structure Of The S62a Mutant Of Phosphoglycerate
Mutase From Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 261 bits (668), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 170/476 (35%), Positives = 268/476 (56%), Gaps = 38/476 (7%)
Query: 1 MGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGT-LHLIG 55
MGN+EVGH +GAGRI Q +++A+ G+ ++E F N++K + GT LHL G
Sbjct: 59 MGNAEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVK---QHGTSLHLFG 115
Query: 56 LLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELR 115
LLSDGGVHS + L LL+ A++ G KR+ +H DGRDV ++ +++ +++ + E
Sbjct: 116 LLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEY- 174
Query: 116 GKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPN 175
GV +IA+ GR Y +MDR + WD V++ + A V GE P ++ +E ++ +
Sbjct: 175 --GV-GEIATLSGRYY-SMDR-DKRWDRVEKAYRAMVYGEGP-TYRDPLECIEDSYKH-G 227
Query: 176 ANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFP 234
D+++ P VIV E+G+ V I D DA++ +NFR DR + ++ EDF +FDR + P
Sbjct: 228 IYDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHP 287
Query: 235 KIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNG 294
K + L + E + + P +D T GE L +G+R +ET K+ HVTFF +G
Sbjct: 288 KHLFFVCLTHFSE-TVAGYVAFKPTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSG 346
Query: 295 NRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDM 354
R F E+ + I S T++++P+M A E+ + K I + ++ + +N N DM
Sbjct: 347 GREEEFPG--EDRILINSPKVPTYDLKPEMSAYEVTDALLKEIEADKYDAIILNYANPDM 404
Query: 355 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKD 414
VGH+G +E T+ A +A DE + ++DAI GGI ++TADHGNA+++ L D
Sbjct: 405 VGHSGKLEPTIKAVEAVDECLGKVVDAILAKGGIAIITADHGNADEV---------LTPD 455
Query: 415 GNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 470
G Q T+HT PVP+ + G +K R G L ++A T ++L G P +
Sbjct: 456 GKPQ--TAHTTNPVPVIVTKKG----IKLRD---GGILGDLAPTMLDLLGLPQPKE 502
>pdb|2IFY|A Chain A, Structure Of Bacillus Anthracis Cofactor-Independent
Phosphoglucerate Mutase
Length = 508
Score = 255 bits (651), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 172/477 (36%), Positives = 262/477 (54%), Gaps = 40/477 (8%)
Query: 1 MGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLS 58
MGNSEVGH +GAGRI Q V++A+ G+ ++E F + IK E GT LHL GLLS
Sbjct: 57 MGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLS 116
Query: 59 DGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKG 118
DGGVHS ++ + LL+ A++ G +++ +H DGRDV ++ +++ + + E G
Sbjct: 117 DGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDVGPKTAQSYIDATNEVIKE---TG 173
Query: 119 VDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN- 177
V Q A+ GR Y +MDR + WD V++ + A V GE P +KSA E V E AN
Sbjct: 174 V-GQFATISGRYY-SMDR-DKRWDRVEKCYRAMVNGEGP-TYKSAEECV----EDSYANG 225
Query: 178 --DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFP 234
D+++ P VIV+E+ V I D DAV+ +NFR DR + +A+ DF +FDR + P
Sbjct: 226 IYDEFVLPSVIVNEDNTPVATINDDDAVIFYNFRPDRAIQIARVFTNGDFREFDRGEKVP 285
Query: 235 KI-RYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWN 293
I + M + + + P +D T GE + G++ +ET K+ HVTFF++
Sbjct: 286 HIPEFVCMTHFSETVD--GYVAFKPMNLDNTLGEVVAQAGLKQLRIAETEKYPHVTFFFS 343
Query: 294 GNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSD 353
G R F EE + I S T++++P+M E+ + I + + + +N N D
Sbjct: 344 GGREAEFPG--EERILINSPKVATYDLKPEMSIYEVTDALVNEIENDKHDVIILNFANCD 401
Query: 354 MVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLK 413
MVGH+G +E T+ A +A DE + +++AI G+ L+TADHGNA++ + GEP
Sbjct: 402 MVGHSGMMEPTIKAVEATDECLGKVVEAILAKDGVALITADHGNADE--ELTSEGEP--- 456
Query: 414 DGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 470
+T+HT PVP + +DV+ R D G L ++A T + L G E P +
Sbjct: 457 ------MTAHTTNPVPFIV----TKNDVELRED---GILGDIAPTMLTLLGVEQPKE 500
>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
pdb|1AO5|B Chain B, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
Length = 237
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 360 DIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQV 419
D++ + + K+ + +KV + L + G +D R+ SG PL+ DG +Q
Sbjct: 146 DLQCVFITLLPNENCAKVYL---QKVTDVMLCAGEMGGGKDTC-RDDSGGPLICDGILQG 201
Query: 420 LTSHTLKPVPIAIGGPGLP 438
TS+ P+ G PG+P
Sbjct: 202 TTSYG----PVPCGKPGVP 216
>pdb|3AKC|A Chain A, Crystal Structure Of Cmp Kinase In Complex With Cdp And
Adp From Thermus Thermophilus Hb8
pdb|3AKD|A Chain A, Crystal Structure Of Cmp Kinase In Complex With Cdp From
Thermus Thermophilus Hb8
pdb|3AKE|A Chain A, Crystal Structure Of Cmp Kinase In Complex With Cmp From
Thermus Thermophilus Hb8
Length = 208
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 87 HILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKR 146
+L DG D+ F+ T E D + V A G R +V E V
Sbjct: 76 RVLADGEDL-----TSFLHTPEVD------RVVSAVARLPGVRAWVNRRLKEVPPPFVAE 124
Query: 147 GWD--AQVLGEAPHKF----KSAVEAVKKLREQPNANDQYLPPFVIVDENGKA 193
G D V EA HKF V A ++ RE+P A ++ L + DE KA
Sbjct: 125 GRDMGTAVFPEAAHKFYLTASPEVRAWRRARERPQAYEEVLRDLLRRDERDKA 177
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 158 HKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFN 207
H+ S +EA+KK + ++ + +VD+N K VG I DGD + T +
Sbjct: 87 HEDASILEAIKK-XDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS 135
>pdb|2ZKT|A Chain A, Structure Of Ph0037 Protein From Pyrococcus Horikoshii
pdb|2ZKT|B Chain B, Structure Of Ph0037 Protein From Pyrococcus Horikoshii
Length = 412
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 332 RAKKAI-LSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYL 390
+AKKA+ L + + V ++ +D GH + + AD + I+D ++ +
Sbjct: 283 KAKKAVELLKDYDFVFLHFKPTDAAGHDNKPKLKAELIERADRMIGYILDHVDLEEVVIA 342
Query: 391 VTADHGNAEDMVKRNKSGEPL 411
+T DH +++ N SG+P+
Sbjct: 343 ITGDHSTPCEVM--NHSGDPV 361
>pdb|4G2D|A Chain A, Crystal Structure Of The Hyperthermophilic Sulfolobus
Islandicus Pll Sislac
Length = 315
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 302 SNLEEYVEIPSDS-GITFNVQPKMKALEIAER-AKKAILSRR-------FHQVRVNL--- 349
SN +V I +D GIT +V+ ++A I + AK I++ + R+ +
Sbjct: 131 SNKAGFVXIAADEPGITKDVEKVIRAAAITHKEAKVPIITHSNAHNNTGLEEQRILMEEG 190
Query: 350 --PNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKS 407
P ++GH GD + T K AD+ I +++ G + D KRN++
Sbjct: 191 VDPGKILIGHLGDTDNTDYIKKIADKGSFI---GLDRYGLDLFLPVD--------KRNET 239
Query: 408 GEPLLKDG-NIQVLTSH 423
L+KDG + +++ SH
Sbjct: 240 TLKLIKDGYSDRIMISH 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,411,027
Number of Sequences: 62578
Number of extensions: 706740
Number of successful extensions: 1822
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1792
Number of HSP's gapped (non-prelim): 18
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)