Query 011613
Match_columns 481
No_of_seqs 314 out of 2071
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:18:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02538 2,3-bisphosphoglycera 100.0 7E-158 2E-162 1250.9 50.7 477 1-477 79-557 (558)
2 TIGR01307 pgm_bpd_ind 2,3-bisp 100.0 3E-151 7E-156 1197.4 49.3 443 1-476 56-501 (501)
3 COG0696 GpmI Phosphoglyceromut 100.0 3E-150 6E-155 1160.3 41.6 446 1-477 59-508 (509)
4 PRK05434 phosphoglyceromutase; 100.0 3E-141 6E-146 1128.0 46.4 444 1-476 60-506 (507)
5 KOG4513 Phosphoglycerate mutas 100.0 3E-130 6E-135 978.1 39.3 452 1-476 75-530 (531)
6 PF06415 iPGM_N: BPG-independe 100.0 4.2E-87 9.1E-92 643.4 22.5 221 24-254 1-223 (223)
7 PF01676 Metalloenzyme: Metall 100.0 1.1E-28 2.4E-33 244.2 7.8 182 258-473 70-251 (252)
8 PRK12383 putative mutase; Prov 99.9 1.7E-22 3.6E-27 211.0 18.0 166 263-478 234-400 (406)
9 TIGR01696 deoB phosphopentomut 99.9 5.7E-22 1.2E-26 205.3 19.8 160 263-469 217-377 (381)
10 PRK05362 phosphopentomutase; P 99.9 4.2E-22 9.1E-27 207.8 18.8 166 263-478 224-392 (394)
11 PRK04024 cofactor-independent 99.9 2.2E-22 4.8E-27 211.6 12.7 178 266-465 201-406 (412)
12 TIGR00306 apgM 2,3-bisphosphog 99.8 1.4E-20 3.1E-25 197.2 11.7 176 263-460 192-395 (396)
13 PRK04200 cofactor-independent 99.8 3.4E-19 7.4E-24 186.9 12.4 178 262-461 187-394 (395)
14 TIGR02535 hyp_Hser_kinase prop 99.8 1.1E-18 2.4E-23 183.1 12.1 177 262-460 188-395 (396)
15 COG3635 Predicted phosphoglyce 99.7 2.9E-17 6.2E-22 167.4 12.7 178 265-465 203-408 (408)
16 COG1015 DeoB Phosphopentomutas 99.7 2.2E-16 4.7E-21 160.5 15.6 168 257-476 223-393 (397)
17 PRK04135 cofactor-independent 99.7 3.2E-16 6.9E-21 163.4 12.8 156 285-465 213-389 (395)
18 TIGR03417 chol_sulfatase choli 99.6 2.7E-14 5.9E-19 154.4 14.7 101 363-478 254-363 (500)
19 PRK13759 arylsulfatase; Provis 99.5 8E-14 1.7E-18 150.3 14.9 139 326-478 182-379 (485)
20 PF00884 Sulfatase: Sulfatase; 99.4 1.3E-11 2.8E-16 122.0 18.7 133 323-465 150-308 (308)
21 KOG3731 Sulfatases [Carbohydra 99.4 2.3E-12 5.1E-17 133.6 13.0 102 364-478 275-381 (541)
22 COG3119 AslA Arylsulfatase A a 99.3 3E-12 6.5E-17 137.8 10.9 104 362-477 260-371 (475)
23 PRK03776 phosphoglycerol trans 99.3 9.6E-11 2.1E-15 130.7 17.3 193 263-478 244-466 (762)
24 PRK12363 phosphoglycerol trans 99.3 1.3E-10 2.8E-15 129.2 18.3 188 263-476 240-456 (703)
25 cd00016 alkPPc Alkaline phosph 99.2 1.9E-10 4.2E-15 120.8 15.4 135 325-465 232-384 (384)
26 PRK09598 lipid A phosphoethano 99.0 6.8E-09 1.5E-13 113.1 16.6 136 328-471 343-509 (522)
27 PRK11598 putative metal depend 99.0 9.4E-09 2E-13 112.5 17.5 141 328-477 358-539 (545)
28 PRK10649 hypothetical protein; 99.0 9.9E-09 2.1E-13 113.2 15.7 192 262-476 310-542 (577)
29 PRK11560 phosphoethanolamine t 99.0 1.4E-08 3.1E-13 111.2 16.8 193 262-473 318-547 (558)
30 KOG3867 Sulfatase [General fun 98.8 1.2E-08 2.6E-13 110.1 8.4 112 362-478 269-388 (528)
31 COG3083 Predicted hydrolase of 98.7 1.1E-07 2.4E-12 100.8 12.9 134 327-478 376-535 (600)
32 KOG2126 Glycosylphosphatidylin 98.7 4.4E-08 9.6E-13 109.2 10.4 180 262-473 143-325 (895)
33 KOG2125 Glycosylphosphatidylin 98.7 2.5E-08 5.5E-13 108.7 7.2 120 338-473 188-314 (760)
34 TIGR02335 hydr_PhnA phosphonoa 98.4 2.4E-06 5.2E-11 90.8 12.7 66 328-399 175-242 (408)
35 PF01663 Phosphodiest: Type I 98.4 4E-07 8.7E-12 92.8 6.3 71 330-400 172-248 (365)
36 PRK10518 alkaline phosphatase; 98.3 5.3E-06 1.1E-10 89.2 13.4 135 325-466 325-476 (476)
37 COG1368 MdoB Phosphoglycerol t 98.2 7.1E-06 1.5E-10 92.0 12.3 187 262-469 342-555 (650)
38 TIGR03397 acid_phos_Burk acid 98.1 3.2E-05 6.9E-10 83.3 13.3 115 333-468 335-455 (483)
39 KOG2645 Type I phosphodiestera 98.1 9.4E-06 2E-10 86.0 9.0 74 327-400 158-239 (418)
40 COG1785 PhoA Alkaline phosphat 97.8 0.00039 8.5E-09 74.6 14.4 72 325-396 281-354 (482)
41 smart00098 alkPPc Alkaline pho 97.6 0.00026 5.6E-09 75.5 9.3 74 325-398 235-310 (419)
42 PF00245 Alk_phosphatase: Alka 97.2 0.00033 7.2E-09 74.9 4.8 74 325-398 238-313 (421)
43 COG1524 Uncharacterized protei 97.1 0.00043 9.4E-09 74.2 3.7 60 339-398 215-280 (450)
44 PF08665 PglZ: PglZ domain; I 96.9 0.002 4.3E-08 60.9 6.7 59 340-398 110-175 (181)
45 KOG2124 Glycosylphosphatidylin 96.9 0.0021 4.6E-08 72.6 7.5 116 343-473 199-331 (883)
46 KOG4126 Alkaline phosphatase [ 96.7 0.011 2.3E-07 63.8 10.3 77 325-401 326-403 (529)
47 TIGR02687 conserved hypothetic 96.2 0.0077 1.7E-07 69.6 6.3 57 340-398 568-629 (844)
48 COG2194 Predicted membrane-ass 95.1 0.28 6E-06 54.5 12.9 100 362-468 419-530 (555)
49 PF02995 DUF229: Protein of un 92.3 0.72 1.6E-05 50.6 9.8 182 263-470 206-411 (497)
50 PF07394 DUF1501: Protein of u 89.3 2.4 5.3E-05 44.6 10.1 113 340-468 244-368 (392)
51 COG3379 Uncharacterized conser 87.2 0.37 8E-06 51.1 2.2 28 450-477 439-468 (471)
52 PF04185 Phosphoesterase: Phos 86.6 5.1 0.00011 42.2 10.4 117 335-466 248-376 (376)
53 cd01455 vWA_F11C1-5a_type Von 86.4 2.6 5.6E-05 40.6 7.4 76 50-153 111-187 (191)
54 PF01261 AP_endonuc_2: Xylose 78.4 9.8 0.00021 35.1 7.9 81 67-152 27-118 (213)
55 cd01453 vWA_transcription_fact 72.2 16 0.00034 34.5 7.6 119 4-152 47-179 (183)
56 PRK09453 phosphodiesterase; Pr 68.7 15 0.00033 34.1 6.7 68 54-129 3-72 (182)
57 PF01261 AP_endonuc_2: Xylose 67.2 18 0.00039 33.4 6.8 61 66-131 70-136 (213)
58 TIGR03396 PC_PLC phospholipase 64.1 1.1E+02 0.0024 35.3 13.3 41 425-468 389-429 (690)
59 smart00518 AP2Ec AP endonuclea 63.3 26 0.00056 34.6 7.4 81 65-152 43-128 (273)
60 COG3379 Uncharacterized conser 63.0 21 0.00046 38.3 6.8 58 340-397 190-264 (471)
61 PRK09856 fructoselysine 3-epim 58.6 18 0.00039 35.7 5.4 55 65-124 88-146 (275)
62 cd01467 vWA_BatA_type VWA BatA 56.6 33 0.00072 31.3 6.4 55 38-95 88-144 (180)
63 PRK13685 hypothetical protein; 54.8 41 0.0009 34.6 7.5 81 51-155 195-290 (326)
64 PRK06552 keto-hydroxyglutarate 53.1 49 0.0011 32.3 7.2 121 8-152 67-206 (213)
65 TIGR03436 acidobact_VWFA VWFA- 49.4 63 0.0014 32.4 7.7 36 54-92 168-203 (296)
66 cd07937 DRE_TIM_PC_TC_5S Pyruv 47.6 1.1E+02 0.0023 30.9 9.0 30 50-86 107-136 (275)
67 COG2515 Acd 1-aminocyclopropan 47.3 21 0.00046 36.9 3.7 29 56-86 67-95 (323)
68 PF13768 VWA_3: von Willebrand 46.9 47 0.001 29.6 5.7 62 38-107 83-145 (155)
69 cd01465 vWA_subgroup VWA subgr 45.5 82 0.0018 28.1 7.1 38 51-92 98-138 (170)
70 PRK01060 endonuclease IV; Prov 45.4 81 0.0018 31.2 7.7 80 65-149 45-131 (281)
71 cd02685 MIT_C MIT_C; domain fo 40.9 62 0.0013 30.1 5.4 51 64-114 33-83 (148)
72 PF13519 VWA_2: von Willebrand 40.3 1.9E+02 0.0042 25.2 8.6 74 50-151 99-172 (172)
73 COG1082 IolE Sugar phosphate i 40.2 1.4E+02 0.003 29.0 8.3 65 50-114 60-138 (274)
74 PRK07114 keto-hydroxyglutarate 39.9 64 0.0014 31.8 5.7 121 6-151 68-212 (222)
75 PRK13753 dihydropteroate synth 39.0 1.6E+02 0.0035 30.1 8.6 65 51-115 2-73 (279)
76 cd01477 vWA_F09G8-8_type VWA F 38.4 84 0.0018 30.0 6.2 44 50-96 131-174 (193)
77 cd07388 MPP_Tt1561 Thermus the 37.8 1.6E+02 0.0035 29.0 8.2 36 50-88 3-38 (224)
78 cd00198 vWFA Von Willebrand fa 36.6 83 0.0018 26.8 5.5 42 49-93 100-141 (161)
79 PF05827 ATP-synt_S1: Vacuolar 36.4 51 0.0011 33.2 4.6 50 341-395 127-177 (282)
80 PTZ00445 p36-lilke protein; Pr 36.4 55 0.0012 32.3 4.6 71 325-395 26-102 (219)
81 PRK13125 trpA tryptophan synth 36.0 1.6E+02 0.0034 29.0 8.0 53 50-114 76-128 (244)
82 cd00019 AP2Ec AP endonuclease 35.8 58 0.0013 32.3 4.9 23 66-88 84-106 (279)
83 PRK13209 L-xylulose 5-phosphat 34.3 85 0.0018 31.1 5.8 26 65-90 97-122 (283)
84 PRK00994 F420-dependent methyl 34.2 52 0.0011 33.0 4.0 75 321-395 40-119 (277)
85 cd01465 vWA_subgroup VWA subgr 34.2 1.5E+02 0.0032 26.5 6.9 15 84-98 98-112 (170)
86 KOG1434 Meiotic recombination 34.0 7 0.00015 39.6 -2.0 63 200-279 149-216 (335)
87 PRK09856 fructoselysine 3-epim 33.6 1.2E+02 0.0026 29.8 6.7 64 54-127 3-67 (275)
88 cd03770 SR_TndX_transposase Se 32.9 2.1E+02 0.0045 25.5 7.6 15 68-82 56-70 (140)
89 PRK11613 folP dihydropteroate 31.9 2E+02 0.0043 29.5 8.0 65 50-114 14-85 (282)
90 PF07555 NAGidase: beta-N-acet 31.9 1.6E+02 0.0036 30.4 7.5 52 65-119 54-105 (306)
91 cd04501 SGNH_hydrolase_like_4 31.2 2.7E+02 0.0057 25.2 8.2 58 327-392 45-102 (183)
92 COG1954 GlpP Glycerol-3-phosph 30.6 55 0.0012 31.2 3.4 77 64-153 32-119 (181)
93 TIGR01182 eda Entner-Doudoroff 30.4 1.3E+02 0.0028 29.3 6.1 119 6-150 57-199 (204)
94 cd01454 vWA_norD_type norD typ 30.0 2.4E+02 0.0052 25.7 7.7 67 37-107 88-165 (174)
95 TIGR00853 pts-lac PTS system, 29.5 1.4E+02 0.003 25.3 5.4 77 51-136 4-91 (95)
96 cd01454 vWA_norD_type norD typ 29.5 1.5E+02 0.0033 27.0 6.3 17 83-99 104-120 (174)
97 COG2861 Uncharacterized protei 27.7 93 0.002 31.3 4.6 41 73-114 166-206 (250)
98 KOG4146 Ubiquitin-like protein 27.4 1E+02 0.0022 26.5 4.1 51 154-206 32-95 (101)
99 PTZ00441 sporozoite surface pr 26.7 4.5E+02 0.0097 29.8 10.1 94 35-152 129-227 (576)
100 PF05991 NYN_YacP: YacP-like N 26.5 43 0.00092 31.3 2.0 28 369-396 77-105 (166)
101 cd00984 DnaB_C DnaB helicase C 26.5 3.7E+02 0.0079 25.7 8.6 65 324-393 106-170 (242)
102 smart00187 INB Integrin beta s 26.5 81 0.0018 34.1 4.2 20 48-67 227-246 (423)
103 TIGR00542 hxl6Piso_put hexulos 26.3 2.1E+02 0.0046 28.3 7.1 114 29-152 8-139 (279)
104 PF03279 Lip_A_acyltrans: Bact 25.9 3.4E+02 0.0074 27.1 8.6 80 34-115 176-283 (295)
105 TIGR00542 hxl6Piso_put hexulos 25.7 2E+02 0.0043 28.5 6.8 23 65-87 92-114 (279)
106 TIGR03822 AblA_like_2 lysine-2 25.6 2.1E+02 0.0045 29.5 7.1 68 41-109 218-292 (321)
107 COG1574 Predicted metal-depend 25.1 70 0.0015 35.7 3.6 42 50-92 281-345 (535)
108 cd01460 vWA_midasin VWA_Midasi 25.1 93 0.002 31.5 4.2 40 51-92 165-204 (266)
109 PF03460 NIR_SIR_ferr: Nitrite 24.7 1.6E+02 0.0034 22.8 4.7 38 50-90 8-45 (69)
110 COG2028 Uncharacterized conser 24.3 93 0.002 28.0 3.5 43 159-212 8-50 (145)
111 TIGR02635 RhaI_grampos L-rhamn 24.0 2.2E+02 0.0047 30.4 6.9 33 65-98 114-146 (378)
112 PRK14829 undecaprenyl pyrophos 23.8 2.6E+02 0.0057 27.9 7.1 59 66-130 44-110 (243)
113 PRK06886 hypothetical protein; 23.7 8.4E+02 0.018 25.3 12.0 74 66-153 161-234 (329)
114 PRK01060 endonuclease IV; Prov 23.6 2.9E+02 0.0063 27.2 7.5 24 65-88 87-110 (281)
115 TIGR03581 EF_0839 conserved hy 23.4 76 0.0016 31.4 3.1 67 35-109 162-229 (236)
116 cd01025 TOPRIM_recR TOPRIM_rec 23.3 1.5E+02 0.0032 26.3 4.6 66 41-109 13-82 (112)
117 smart00518 AP2Ec AP endonuclea 23.2 1.4E+02 0.0031 29.3 5.1 25 64-88 81-105 (273)
118 PRK04280 arginine repressor; P 23.1 5.6E+02 0.012 23.6 8.6 113 71-221 23-145 (148)
119 cd03174 DRE_TIM_metallolyase D 23.1 4.7E+02 0.01 25.3 8.8 15 67-81 115-129 (265)
120 cd00019 AP2Ec AP endonuclease 22.7 3.2E+02 0.007 26.9 7.6 83 66-152 44-129 (279)
121 cd00003 PNPsynthase Pyridoxine 22.6 2.4E+02 0.0052 28.2 6.4 103 16-136 49-161 (234)
122 PRK13210 putative L-xylulose 5 22.2 1.8E+02 0.0039 28.6 5.7 25 65-89 92-116 (284)
123 PRK05265 pyridoxine 5'-phospha 22.0 2.5E+02 0.0053 28.2 6.4 98 16-131 52-159 (239)
124 cd01829 SGNH_hydrolase_peri2 S 21.7 3.3E+02 0.0072 24.9 7.1 62 333-394 51-116 (200)
125 PRK08943 lipid A biosynthesis 21.5 6.1E+02 0.013 25.8 9.5 112 1-114 140-292 (314)
126 TIGR00559 pdxJ pyridoxine 5'-p 21.0 2.7E+02 0.0058 27.9 6.4 103 16-136 49-161 (237)
127 PRK12677 xylose isomerase; Pro 21.0 2.2E+02 0.0047 30.3 6.2 59 66-124 113-176 (384)
128 cd01450 vWFA_subfamily_ECM Von 20.9 2.7E+02 0.006 24.1 6.1 15 84-98 105-119 (161)
129 COG0541 Ffh Signal recognition 20.7 3.3E+02 0.0072 29.8 7.4 74 263-351 118-192 (451)
130 PLN02962 hydroxyacylglutathion 20.7 83 0.0018 31.4 2.8 26 62-88 68-94 (251)
131 TIGR02442 Cob-chelat-sub cobal 20.5 2.7E+02 0.0058 31.6 7.2 31 83-113 565-598 (633)
132 cd01822 Lysophospholipase_L1_l 20.2 6.1E+02 0.013 22.4 8.4 54 331-392 54-107 (177)
133 TIGR02631 xylA_Arthro xylose i 20.2 2.6E+02 0.0056 29.7 6.6 31 66-96 114-144 (382)
134 cd01832 SGNH_hydrolase_like_1 20.1 6.4E+02 0.014 22.6 8.7 48 339-393 65-112 (185)
No 1
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=100.00 E-value=7.3e-158 Score=1250.87 Aligned_cols=477 Identities=86% Similarity=1.342 Sum_probs=438.3
Q ss_pred CCCchhhhcccCCccccccchhHHHHHHhcCCCCCchhHHhhhhhccCCceEEEEeecCCCccccHHhHHHHHHHHHHcC
Q 011613 1 MGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERG 80 (481)
Q Consensus 1 mGnSEvGH~~iGaGrvv~q~~~ri~~~i~~g~~~~~~~~~~~~~~~~~~~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g 80 (481)
|||||||||||||||||+|+++|||+||++|+|++||+|+++++.+++++|||||||||||||||++||++|+++|+++|
T Consensus 79 mGNSEVGHlniGaGRiv~Q~l~rI~~ai~~g~~~~n~~l~~~~~~~~~~~lHl~GL~SdGGVHSh~~Hl~al~~~a~~~g 158 (558)
T PLN02538 79 MGNSEVGHNALGAGRIFAQGAKLVDLALASGKIFEGEGFKYIKEAFATGTLHLIGLLSDGGVHSRLDQLQLLLKGAAERG 158 (558)
T ss_pred CcchHHhhhhhccceeecchhHHHHHHHhcCCcccCHHHHHHHHHhcCCeeEEEEeccCCCcccHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999886679999999999999999999999999999999
Q ss_pred CCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCCc
Q 011613 81 AKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKF 160 (481)
Q Consensus 81 ~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDr~d~rw~r~~~ay~~~~~g~~~~~~ 160 (481)
+++||||+|+|||||+|+||++||++|+++|+++++.|+.|+||||+||||.||||||+|||||++||++||.|+|+..+
T Consensus 159 v~~v~vH~f~DGRDt~p~S~~~yl~~l~~~l~~~~~~g~~g~iAsv~GR~yyaMDR~d~rW~rv~~ay~alv~g~~~~~~ 238 (558)
T PLN02538 159 AKRIRVHVLTDGRDVPDGSSVGFVETLEKDLAELREKGCDARIASGGGRMYVTMDRYENDWNVVKRGWDAHVLGEAPHKF 238 (558)
T ss_pred CCeEEEEEEcCCCCCCcccHHHHHHHHHHHHHHhhcCCCcEEEEEEeCCceeecccccccHHHHHHHHHHHhcCCCcccc
Confidence 99999999999999999999999999999999875456524999999994339999999999999999999999995478
Q ss_pred cCHHHHHHHHHcCCC-CCCCCCCCEeeecCCCCccccccCCCEEEEeecCcchHHHHHHhcccCCCCCCccCcCCceeEE
Q 011613 161 KSAVEAVKKLREQPN-ANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYA 239 (481)
Q Consensus 161 ~~~~~~i~~~y~~~~-~~Defi~p~~~~~~~~~~~~~i~~gD~vi~~NfR~DR~rqi~~a~~~~~f~~f~~~~~~~~~~~ 239 (481)
.|+.+||+++|++|. +|||||+|++|.+.+|+|+++|+|||+|||||||+|||||||+||++++|++|+|...|++.|+
T Consensus 239 ~~~~~ai~~~y~~g~~~tDEfi~P~vi~~~~g~~~~~i~dgD~ViffNFR~DRarqit~a~~~~~f~~f~r~~~p~~~~~ 318 (558)
T PLN02538 239 KSALEAVKKLREEPPPANDQYLPPFVIVDEDGKPVGPIEDGDAVVTFNFRADRMVMIAKALEYEDFDKFDRVRVPKIRYA 318 (558)
T ss_pred CCHHHHHHHHHhCCCCCCCCcCCCeEEecCCCCCcccccCCCEEEEecCCChHHHHHHHHhcccCCcccCcCCCCCcEEE
Confidence 999999999999953 5999999999987567888999999999999999999999999999999999999888889999
Q ss_pred EeeeecCCCCCcccccCCCCcccccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCccccC
Q 011613 240 GMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFN 319 (481)
Q Consensus 240 ~mt~Y~~~~~~~v~fl~~~~~~~~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd 319 (481)
|||+|+++++.|++|||||++++|||+|||+++|++|+||||||||+|||||||||+|.+|+.++|+|+++|||+++|||
T Consensus 319 ~mt~Yd~~~~~p~~~~f~p~~~~ntLgevls~~Gl~QlriAETEKyaHVTfFfNGG~e~~f~~e~e~~i~ipsp~v~tyd 398 (558)
T PLN02538 319 GMLQYDGELKLPSHYLVSPPLIERTSGEYLVANGVRTFACSETVKFGHVTFFWNGNRSGYFNEKLEEYVEIPSDNGIPFN 398 (558)
T ss_pred eCeEecccCCCcceEeeCCCcCCCCHHHHHHhCCCceEEeecccccceeEEeecCCccccCCCCCceEEECCCCCCCCcc
Confidence 99999999999977777999999999999999999999999999999999999999999994337899999999999999
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCcc
Q 011613 320 VQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAE 399 (481)
Q Consensus 320 ~~pemsa~~vtd~ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~e 399 (481)
++||||+.+|++++++.|++.+|||+++||+|+||+||+|+++++++|||++|.||++|++++++.|+++||||||||+|
T Consensus 399 ~~PeMSA~eVtd~~i~~i~~~~ydfi~vNfan~DmvGHtG~~ea~ikAIE~vD~~Lg~Il~al~~~g~~liITADHGNaE 478 (558)
T PLN02538 399 VQPKMKALEIAEKARDALLSGKFDQVRVNLANGDMVGHTGDLEATIVACEAVDAAVKEILDAVEQVGGIYLVTADHGNAE 478 (558)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred cccccCCCCCCcc-cCCCccccccCCCceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCCCCCCCCCCCcee
Q 011613 400 DMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLIE 477 (481)
Q Consensus 400 ~m~~~d~~g~~~~-~~G~~~p~t~HT~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~em~GsLl~ 477 (481)
.|.+.+.+|.|.. .+|+|.|+|.||.++||||+++++.+++.++++.+...+|+|||||||++||+++|++|+|||+.
T Consensus 479 ~M~d~~~~G~p~~~~~Gtp~~~t~HT~npVP~Ii~g~~~~~~~~l~~~l~~~gLaDVApTIL~lLGl~~P~emt~sl~~ 557 (558)
T PLN02538 479 DMVKRDKSGKPLLDKDGNPQILTSHTLAPVPVAIGGPGLPPGVRFRDDLPTAGLANVAATVMNLHGFEAPADYEPSLIE 557 (558)
T ss_pred hhccccccCCccccccCCCCCCCCCCCCCcCEEEEeCCcccCcccccCccCCcHHhHHHHHHHHhCCCCchhcCcchhc
Confidence 9974334565433 46777789999999999999998764333332211123599999999999999999999999985
No 2
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=100.00 E-value=3.2e-151 Score=1197.39 Aligned_cols=443 Identities=39% Similarity=0.655 Sum_probs=418.8
Q ss_pred CCCchhhhcccCCccccccchhHHHHHHhcCCCCCchhHHhhhhhc-cC-CceEEEEeecCCCccccHHhHHHHHHHHHH
Q 011613 1 MGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF-ET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASE 78 (481)
Q Consensus 1 mGnSEvGH~~iGaGrvv~q~~~ri~~~i~~g~~~~~~~~~~~~~~~-~~-~~lHl~GL~SdggvHsh~~hl~~l~~~a~~ 78 (481)
|||||||||||||||||+|+|+|||+||++|+|++||+|+++++.+ ++ ++|||||||||||||||+|||++|+++|++
T Consensus 56 mGNSEVGH~~iGaGRiv~q~~~ri~~ai~~g~~~~n~~l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~ 135 (501)
T TIGR01307 56 MGNSEVGHLNIGAGRVVYQDLVRISQAIKDGEFFANPALLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELAAE 135 (501)
T ss_pred CCchHHHHhhcCCCceeccchHHHHHHHhcCCcccCHHHHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 44 699999999999999999999999999999
Q ss_pred cCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCC
Q 011613 79 RGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPH 158 (481)
Q Consensus 79 ~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDr~d~rw~r~~~ay~~~~~g~~~~ 158 (481)
+|+++||||+|+|||||+|+||++||++|+++|+++ |+| +||||+|||| |||| |||||||++||++||.|+|+
T Consensus 136 ~g~~~v~vH~~~DGRD~~p~s~~~~~~~l~~~~~~~---~~~-~iasv~GRyy-aMDR-d~rw~rv~~ay~~~~~g~~~- 208 (501)
T TIGR01307 136 RGIEKVVLHAFTDGRDTAPKSAESYLEQLQAFLKEI---GNG-RIATISGRYY-AMDR-DQRWDRVEIAYKAITGGDGF- 208 (501)
T ss_pred cCCCeEEEEEecCCCCCCchhHHHHHHHHHHHHHHh---CCE-EEEEEeCcce-eecC-ccchHHHHHHHHHHhcCCCC-
Confidence 999999999999999999999999999999999987 774 9999999999 9999 99999999999999999995
Q ss_pred CccCHHHHHHHHHcCCCCCCCCCCCEeeecCCCCccccccCCCEEEEeecCcchHHHHHHhcccCCCCCCccCcCCceeE
Q 011613 159 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRY 238 (481)
Q Consensus 159 ~~~~~~~~i~~~y~~~~~~Defi~p~~~~~~~~~~~~~i~~gD~vi~~NfR~DR~rqi~~a~~~~~f~~f~~~~~~~~~~ 238 (481)
.+.||.+||+++|++ ++|||||+|++|.+ + ++|+|||+|||||||+|||||||+||.+++|++|+|.+.|++.|
T Consensus 209 ~~~~~~~ai~~~y~~-~~~Defi~p~vi~~--~---~~i~dgD~vif~NfR~DRarqi~~a~~~~~f~~f~r~~~~~~~~ 282 (501)
T TIGR01307 209 EFSDPVAYIQDAYAR-DITDEFIKPTIIGN--G---GALKDGDAVIFFNFRADRAREITRALVNSDFDGFPREKNPKLDF 282 (501)
T ss_pred CCCCHHHHHHHHHhC-CCCCCCCCCeEecC--C---CcccCCCEEEEecCCChHHHHHHHHhcCCCCCcCCcCCCCCceE
Confidence 789999999999999 58999999999963 2 48999999999999999999999999999999999988889999
Q ss_pred EEeeeecCCCCCcccccCCCCcccccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCcccc
Q 011613 239 AGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITF 318 (481)
Q Consensus 239 ~~mt~Y~~~~~~~v~fl~~~~~~~~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~ty 318 (481)
+|||+|+++++.|++| ||++++|||+|||+++|++|+||||||||+|||||||||+|.+| ++|+|.++|||+++||
T Consensus 283 ~~mt~Y~~~~~~~v~f--~~~~~~n~lge~ls~~g~~qlriaETeKyaHVTfFfnGg~e~~f--~ge~r~lv~sp~v~ty 358 (501)
T TIGR01307 283 VTMTQYDGTFPSPVAF--PPQSLTNTLGEVLAKHDLTQLRIAETEKYAHVTFFFNGGVEVPF--AGETRTLIPSPKVATY 358 (501)
T ss_pred EEeEEecCCCCCceec--CCCCCCCCHHHHHHHCCCcEEEEeeccccceeeeeecCCccccC--CCceeEEeCCCCCCcc
Confidence 9999999999999988 99999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCc
Q 011613 319 NVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNA 398 (481)
Q Consensus 319 d~~pemsa~~vtd~ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~ 398 (481)
|++|+|++++++++++++|++++|||+++||+++||+||++++++++++||++|+|||+|++++++.|++|||||||||+
T Consensus 359 d~~PeMsa~evtd~~i~~I~~~k~dfi~vnfan~DmvGHtg~~~a~v~AIE~vD~~LGrIl~aLke~G~~VIiTADHGna 438 (501)
T TIGR01307 359 DLQPEMSAKAVTDAVLEAIAQGKFDLIVVNFANPDMVGHTGNFEAAIKAVEALDVCLGRIVEACKKVGGTLFLTADHGNA 438 (501)
T ss_pred ccCCccCHHHHHHHHHHHHhccCCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCCCCCCCCCC-Cce
Q 011613 399 EDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLI 476 (481)
Q Consensus 399 e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~em~G-sLl 476 (481)
|.|. ++ .|+ |++.||+++||||++||+..+ ...+ .++++|||||||++||+++|++|+| ||+
T Consensus 439 e~m~--d~-------~g~--p~t~HT~~~VP~Ii~~p~~i~--~~~~---~~sL~DIaPTiLdL~Gi~~P~emdG~SLl 501 (501)
T TIGR01307 439 EEMI--DE-------NGN--PHTAHTTNPVPFVCVGAKNVK--LIRE---GGVLADIAPTILDLMGLEQPAEMTGKSLL 501 (501)
T ss_pred hhcc--CC-------CCC--cccCCCCeEeeEEEEECCccc--ccCC---CceEhHHHHHHHHHhCcCCCCCCCCccCC
Confidence 9885 32 343 589999999999999984211 1221 4679999999999999999999999 875
No 3
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-150 Score=1160.28 Aligned_cols=446 Identities=41% Similarity=0.678 Sum_probs=422.3
Q ss_pred CCCchhhhcccCCccccccchhHHHHHHhcCCCCCchhHHhhhhhc-cC-CceEEEEeecCCCccccHHhHHHHHHHHHH
Q 011613 1 MGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF-ET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASE 78 (481)
Q Consensus 1 mGnSEvGH~~iGaGrvv~q~~~ri~~~i~~g~~~~~~~~~~~~~~~-~~-~~lHl~GL~SdggvHsh~~hl~~l~~~a~~ 78 (481)
||||||||+||||||||||+|+|||++|++|+|++|++|..+++.+ ++ ++||||||+||||||||+|||+||+++|++
T Consensus 59 mGNSEVGHlnIGAGRivyq~l~rI~~aie~g~f~~n~~l~~~~~~v~~~~~~lHlmGl~S~GGVHSh~~Hl~ali~~a~k 138 (509)
T COG0696 59 MGNSEVGHLNIGAGRIVYQDLTRIDKAIEDGSFFENPALLNAIDEVKANGSALHLMGLVSDGGVHSHIDHLLALIELAAK 138 (509)
T ss_pred ccCccccceeeecceEeecccchhhhhhhcCcccccHHHHHHHHHhhhcCceEEEEecccCCcccchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999 55 599999999999999999999999999999
Q ss_pred cCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCC
Q 011613 79 RGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPH 158 (481)
Q Consensus 79 ~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDr~d~rw~r~~~ay~~~~~g~~~~ 158 (481)
+|+++|++|+|+|||||+|+|++.||++|+++++++ |.| +|||++|||| |||| ||||||||+||++|+.++++.
T Consensus 139 ~g~~kV~~H~f~DGRD~~P~s~~~~le~l~~~~~~~---g~~-~iasi~GRYY-aMDR-D~rWdRve~Ay~a~~~~~~~~ 212 (509)
T COG0696 139 NGMKKVYLHAFLDGRDTAPRSALQYLEELEAKAKEY---GNG-RIASISGRYY-AMDR-DNRWDRVEKAYDALTYGEGEF 212 (509)
T ss_pred cCCcEEEEEEecCCCCCCchhHHHHHHHHHHHhhcc---Cce-EEEEEeeeee-cccc-ccchHHHHHHHHHHHcccccc
Confidence 999999999999999999999999999999999998 875 9999999999 9999 999999999999999999866
Q ss_pred CccCHHHHHHHHHcCCCCCCCCCCCEeeecCCCCccccccCCCEEEEeecCcchHHHHHHhcccCCCCCCccC-cCCcee
Q 011613 159 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRV-RFPKIR 237 (481)
Q Consensus 159 ~~~~~~~~i~~~y~~~~~~Defi~p~~~~~~~~~~~~~i~~gD~vi~~NfR~DR~rqi~~a~~~~~f~~f~~~-~~~~~~ 237 (481)
++.+|.++++.+|++ ++|||||.|++|.+ .|.+.|+|||+|||||||+||||||+++|+.++|.+|.|. ++|+..
T Consensus 213 ~~~~~~~~~~~~Y~~-~~tDEFv~p~~i~~---~~~~~i~d~DsvIf~NFR~DRarQl~~~l~~~~f~gF~r~~~~~~~~ 288 (509)
T COG0696 213 TANSAVEAVQASYAR-GITDEFVKPTVIYG---EPVAAIEDGDSVIFFNFRPDRARQLTRALTNDDFDGFSRDKKVPKND 288 (509)
T ss_pred ccCCHHHHHHHHHhc-CCCcccccceeecC---cccccccCCCeEEEeccChhHHHHHHHHhccccccccCcccccccCc
Confidence 899999999999999 58999999999964 3677999999999999999999999999999999999995 346557
Q ss_pred EEEeeeecCCCCCcccccCCCCcccccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCccc
Q 011613 238 YAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGIT 317 (481)
Q Consensus 238 ~~~mt~Y~~~~~~~v~fl~~~~~~~~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~t 317 (481)
|+|||+|+.+++.+|+| ||.++.|||+||++++|++|+||||||||||||||||||+|.|| ++|+|.++|||+|+|
T Consensus 289 ~vtmt~Y~~~~~~~vaF--~p~~i~NtlgEv~~~~gl~QlRiAETEKYAHVTfFfnGG~E~~~--~~e~r~li~SpkVaT 364 (509)
T COG0696 289 FVTMTEYDGSDPLPVAF--PPENLKNTLGEVLSKHGLTQLRIAETEKYAHVTFFFNGGVEEPF--KGEDRILIPSPKVAT 364 (509)
T ss_pred eEEEEecCCCCCcceec--ccccccccHHHHHHhcCchhhhhhhhccccceEEEecCcccccc--CCCccEeccCCCccc
Confidence 99999999999999988 99999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCCccCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCC
Q 011613 318 FNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGN 397 (481)
Q Consensus 318 yd~~pemsa~~vtd~ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn 397 (481)
||++||||+.+||+.+++.|++++||++++||+|||||||||+++++++|||++|.|||++++++++.|+.++|||||||
T Consensus 365 YDl~PEMSa~evtd~~~~~i~~g~~D~iV~N~ANpDMVGHTG~~eatiKAvEavD~~lg~ivd~~~~~gg~~~iTaDHGN 444 (509)
T COG0696 365 YDLKPEMSAKEVTDALVEAIEKGKYDLIVLNYANPDMVGHTGNFEATIKAVEAVDECLGRIVDAVKKNGGTLLITADHGN 444 (509)
T ss_pred cccCcccchHHHHHHHHHHHhCCCCCEEEEecCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCCCCCCCCCC-Cce
Q 011613 398 AEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLI 476 (481)
Q Consensus 398 ~e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~em~G-sLl 476 (481)
+|+|. |+ .|+ |||+||++|||||+.++. +...++ .+.|.|||||||+|||+++|.+|+| ||+
T Consensus 445 aE~m~--d~-------~g~--p~TaHT~npVp~i~~~~~---~v~~~~---~g~LadiAPTiL~llg~~~P~eMtgksl~ 507 (509)
T COG0696 445 AEQMS--DP-------AGN--PHTAHTTNPVPVIYTGKK---GVKARK---SGKLADIAPTILDLLGLEIPAEMTGKSLI 507 (509)
T ss_pred hhhcc--CC-------CCC--ceeccccCCccEEEEcCC---cceeee---ccchhhhhHHHHHHcCCCcchhhcccccc
Confidence 99997 43 344 699999999999999832 334443 4889999999999999999999999 987
Q ss_pred e
Q 011613 477 E 477 (481)
Q Consensus 477 ~ 477 (481)
.
T Consensus 508 ~ 508 (509)
T COG0696 508 I 508 (509)
T ss_pred c
Confidence 4
No 4
>PRK05434 phosphoglyceromutase; Provisional
Probab=100.00 E-value=2.8e-141 Score=1128.01 Aligned_cols=444 Identities=43% Similarity=0.715 Sum_probs=417.2
Q ss_pred CCCchhhhcccCCccccccchhHHHHHHhcCCCCCchhHHhhhhhc-cC-CceEEEEeecCCCccccHHhHHHHHHHHHH
Q 011613 1 MGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF-ET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASE 78 (481)
Q Consensus 1 mGnSEvGH~~iGaGrvv~q~~~ri~~~i~~g~~~~~~~~~~~~~~~-~~-~~lHl~GL~SdggvHsh~~hl~~l~~~a~~ 78 (481)
|||||||||||||||||+|+|+|||+||++|+|++||+|+++++.+ ++ ++|||||||||||||||++||++|+++|++
T Consensus 60 mGNSEVGH~~iGaGriv~q~~~~i~~ai~~g~~~~n~~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a~~ 139 (507)
T PRK05434 60 MGNSEVGHLNIGAGRIVYQDLTRINKAIEDGSFFENPALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELAKE 139 (507)
T ss_pred ccchHHhHhhcCCCceeccchHHHHHHHhcCCcccCHHHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 44 699999999999999999999999999999
Q ss_pred cCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCC
Q 011613 79 RGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPH 158 (481)
Q Consensus 79 ~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDr~d~rw~r~~~ay~~~~~g~~~~ 158 (481)
+|+++|+||+|+|||||+|+||++||++|+++|+++ |+| +||||+|||| |||| |+|||||++||++||.|+|+.
T Consensus 140 ~g~~~v~vH~~~DGRD~~p~s~~~~i~~l~~~~~~~---~~~-~iasv~GRyy-amDR-d~rw~rv~~a~~~~~~g~~~~ 213 (507)
T PRK05434 140 EGVKKVYVHAFLDGRDTPPKSALGYLEELEAKLAEL---GVG-RIASVSGRYY-AMDR-DKRWDRVEKAYDALVLGEGPF 213 (507)
T ss_pred cCCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHHh---CCe-eEEEEecccc-cccc-ccchHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999998 875 9999999999 9999 999999999999999999964
Q ss_pred CccCHHHHHHHHHcCCCCCCCCCCCEeeecCCCCccccccCCCEEEEeecCcchHHHHHHhcccCCCCCCccCcCCceeE
Q 011613 159 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRY 238 (481)
Q Consensus 159 ~~~~~~~~i~~~y~~~~~~Defi~p~~~~~~~~~~~~~i~~gD~vi~~NfR~DR~rqi~~a~~~~~f~~f~~~~~~~~~~ 238 (481)
.+.||.+||+++|++ ++|||||+|++|. +.|.++|+|||+|||||||+|||||||+||.+++|++|+| ..|++.|
T Consensus 214 ~~~~~~~~i~~~y~~-~~~Defi~p~vi~---~~~~~~i~d~D~vif~NfR~DRa~qi~~a~~~~~f~~f~~-~~~~~~~ 288 (507)
T PRK05434 214 TAESAVEALEASYAR-GETDEFVKPTVIG---GEPVAGIEDGDAVIFFNFRADRARQITRAFTDPDFDGFDR-VPKLLNF 288 (507)
T ss_pred CCCCHHHHHHHHHhC-CCCCCCCCCEEec---CCCcCcccCCCEEEEeccCChHHHHHHHHhcCcCcccCCC-CCCCceE
Confidence 579999999999999 5899999999996 4567899999999999999999999999999999999999 3567789
Q ss_pred EEeeeecCCCCCcccccCCCCcccccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCcccc
Q 011613 239 AGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITF 318 (481)
Q Consensus 239 ~~mt~Y~~~~~~~v~fl~~~~~~~~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~ty 318 (481)
+|||+|+++++.|++| ||++++|+++|+|+++|++|+|++|+|||+|+||||+||++.+| ++|+|+++|+|++++|
T Consensus 289 ~~m~~Y~~~~~~~~~f--~~~~~~~~l~e~L~~~gl~q~R~aEtek~ahvt~f~~GG~~~~~--~~e~r~~~~s~~va~y 364 (507)
T PRK05434 289 VTMTQYDADLKVPVAF--PPESLKNTLGEVLAKAGLTQLRIAETEKYAHVTFFFNGGREEPF--PGEDRILIPSPKVATY 364 (507)
T ss_pred EEceEccCCCCCceec--CCcccccHHHHHHhhCCCchhhhhcCCCCCeEEEecCCCcCCCC--CCceeeecCCceeecc
Confidence 9999999999999988 99999999999999999999999999999999999999999999 7799999999999999
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCc
Q 011613 319 NVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNA 398 (481)
Q Consensus 319 d~~pemsa~~vtd~ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~ 398 (481)
|+.|+|++.+++++++++|++++|||+++||+++||+||++++++++++||.+|++||+|++++++.|.+|||||||||+
T Consensus 365 d~~p~Ms~~e~~d~~i~~l~~~~~Dfv~vnf~~~D~vGHtg~~~a~~~AIe~vD~~LGrll~aLk~~g~ivIITADHGn~ 444 (507)
T PRK05434 365 DLKPEMSAYEVTDKLVEAIESGKYDFIILNFANPDMVGHTGNLEAAVKAVEAVDECLGRVVDAVLKVGGTLLITADHGNA 444 (507)
T ss_pred cCCCCCcHHHHHHHHHHHHhccCCCEEEEEecCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCcc
Confidence 99999999999999999999889999999999999999999999999999999999999999999988999999999999
Q ss_pred ccccccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCCCCCCCCCC-Cce
Q 011613 399 EDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLI 476 (481)
Q Consensus 399 e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~em~G-sLl 476 (481)
+.|.+ . ..|+ |++.||+++||||+++|+. ... ..++++|||||||++||+++|++|+| ||+
T Consensus 445 e~m~d--~------~tg~--~~~~HT~~~VPlII~~p~~-----i~~--~~~sL~DIaPTIL~LlGi~~P~~m~G~SLl 506 (507)
T PRK05434 445 EQMID--P------ETGQ--PHTAHTTNPVPFILVGGKA-----LRL--EGGKLADIAPTILDLLGLEQPAEMTGKSLI 506 (507)
T ss_pred ccccc--C------CCCC--cccCCCCeeeEEEEEECCc-----ccC--CCccHHHHHHHHHHHhCcCCCCCCCCccCC
Confidence 98852 1 1233 5899999999999999852 111 13679999999999999999999999 876
No 5
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-130 Score=978.11 Aligned_cols=452 Identities=69% Similarity=1.059 Sum_probs=422.2
Q ss_pred CCCchhhhcccCCccccccchhHHHHHHhcCCCCCchhHHhhhhhccCCceEEEEeecCCCccccHHhHHHHHHHHHHcC
Q 011613 1 MGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERG 80 (481)
Q Consensus 1 mGnSEvGH~~iGaGrvv~q~~~ri~~~i~~g~~~~~~~~~~~~~~~~~~~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g 80 (481)
||||||||+|||||||++||++|||.|+++|.|++|+.|+...+..++|+|||+|||||||||||||||++|++..+++|
T Consensus 75 MGNSEVGHl~iGaGRii~Qdivrid~Av~~gk~~~~e~~~d~~~~~~~g~lHlvGlvSDGGVHShidhl~allka~~erg 154 (531)
T KOG4513|consen 75 MGNSEVGHLAIGAGRIIAQDIVRIDLAVASGKIKENEGFKDKSLSFEDGTLHLVGLVSDGGVHSHIDHLQALLKALAERG 154 (531)
T ss_pred cccccccccccccceeeecchhHHHHHHhcCceecccchhhHHhhccCCeEEEEEEecCCchhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999888877789999999999999999999999999999999
Q ss_pred CCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCCc
Q 011613 81 AKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKF 160 (481)
Q Consensus 81 ~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDr~d~rw~r~~~ay~~~~~g~~~~~~ 160 (481)
+++++||+++|||||.|.|+.+||++-.++|.+. +..|++||++|||| +||| +|+||||+++|+||+.|+.+.++
T Consensus 155 ~~ei~vH~~tDGRDt~p~s~vgfLe~~l~fLr~~---t~~gkvAs~~GR~Y-~mDR-~N~werv~~~~~amv~ge~~~e~ 229 (531)
T KOG4513|consen 155 AKEIRVHILTDGRDTLPGSSVGFLEADLDFLRKV---TVDGKVASGGGRMY-VMDR-ENDWERVKRGWDAMVLGEAPHEF 229 (531)
T ss_pred CceEEEEEecCCccCCCCcchhhHHHHHHHHHHc---cccceEeeccceEE-Eeec-cccHHHhhhhhhhhhhccCchhh
Confidence 9999999999999999999999999999999877 55569999999999 8999 99999999999999999987889
Q ss_pred cCHHHHHH-HHHcCCCCCCCCCCCEeeecCCCCccccccCCCEEEEeecCcchHHHHHHhcccCCCCCCccCcCCceeEE
Q 011613 161 KSAVEAVK-KLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYA 239 (481)
Q Consensus 161 ~~~~~~i~-~~y~~~~~~Defi~p~~~~~~~~~~~~~i~~gD~vi~~NfR~DR~rqi~~a~~~~~f~~f~~~~~~~~~~~ 239 (481)
.++++++. ..|+. +.+|||++|++|+++.|+.++ +.|+|||||||+||||||++||...+|++|+|-++|+++|+
T Consensus 230 g~~ve~v~~~rye~-g~~De~L~p~vi~ge~Gr~~~---~DdtiifFnfRADRMr~ia~a~~~~~~d~~~r~~~p~i~~~ 305 (531)
T KOG4513|consen 230 GGAVEAVKTLRYEP-GANDEYLPPFVIVGERGRAVG---PDDTIIFFNFRADRMRMIAKALEYNDFDKFDRVRHPNIRYA 305 (531)
T ss_pred cchHHHHhhhhhCC-CCCccccCCeEEECCCCcccC---CCCeEEEEecchHHHHHHHHHhccccccccccccCCcceEe
Confidence 99999998 67777 589999999999998775443 36899999999999999999999999999999999999999
Q ss_pred EeeeecCCCC-CcccccCCCCcccccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCcccc
Q 011613 240 GMLQYDGELK-LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITF 318 (481)
Q Consensus 240 ~mt~Y~~~~~-~~v~fl~~~~~~~~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~ty 318 (481)
+||||+.+|. ..+ ||.|+.+.+||+|||+.+|++|++++||+||+|||||||||++.+| ..|+++++|||++.+|
T Consensus 306 gMtqYk~el~psk~--Lf~pp~i~~tlaE~La~~gv~~fhcaEteK~aHVTfFfNGgre~~F--~~ee~v~iPSp~v~sf 381 (531)
T KOG4513|consen 306 GMTQYKGELKPSKY--LFSPPCIDRTLAEYLAHNGVRTFHCAETEKFAHVTFFFNGGREGYF--NEEEYVEIPSPSVISF 381 (531)
T ss_pred ehhhhccccCccee--eeccccccchHHHHHHhcCcceeeecccceeeeEEEEEcCCccccc--CcceEEEecCCCceee
Confidence 9999999995 556 5599999999999999999999999999999999999999999999 7799999999999999
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCc
Q 011613 319 NVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNA 398 (481)
Q Consensus 319 d~~pemsa~~vtd~ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~ 398 (481)
|.+|+|++.++++++++.|++.+++++.||+++||||||||++++++.|||..|.+||+|++++++.++++++||||||+
T Consensus 382 d~qP~M~a~eva~ka~~~ie~G~~p~v~vNlappDMVGHTG~~EAtv~AcEatD~aig~Iy~A~~~~~y~lvvTADHGNA 461 (531)
T KOG4513|consen 382 DVQPKMKALEVAEKARDAIESGKFPQVRVNLAPPDMVGHTGDIEATVVACEATDEAIGKIYDAIEQVGYILVVTADHGNA 461 (531)
T ss_pred ecChhhhHHHHHHHHHHHHHcCCCCeEEEcCCCccccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCCCccccccC-CCcccccHHHHHHHHhCCCCCCCCCC-Cce
Q 011613 399 EDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDL-PNGGLANVAATFINLHGYEAPSDYEP-SLI 476 (481)
Q Consensus 399 e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~~~~~~~~~~~-~~g~L~DIaPTIL~llGi~~P~em~G-sLl 476 (481)
|.|.++| .|+ +|+||+.|||++|.+|+..++.++...+ ...+|+|||||+|++||++.|.||+| |++
T Consensus 462 EkMv~~d--------gGk---~tsHT~~~VPl~i~~pg~~~g~~f~~~~dt~p~L~dVApTVl~imG~p~PsEmtgisvv 530 (531)
T KOG4513|consen 462 EKMVKRD--------GGK---LTSHTLKPVPLAIGGPGLVKGVRFRGDVDTDPGLADVAPTVLNIMGFPAPSEMTGISVV 530 (531)
T ss_pred HHhccCC--------CCc---cccccccccceEecCCccccceeeccccccCchhhhhhHHHHHHhCCCCccccccceee
Confidence 9998532 233 7999999999999999876666666532 23679999999999999999999999 865
No 6
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=100.00 E-value=4.2e-87 Score=643.39 Aligned_cols=221 Identities=42% Similarity=0.742 Sum_probs=179.3
Q ss_pred HHHHHhcCCCCCchhHHhhhhhc-cC-CceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchH
Q 011613 24 VDLALASGKIYQDEGFNYIKPSF-ET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSV 101 (481)
Q Consensus 24 i~~~i~~g~~~~~~~~~~~~~~~-~~-~~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~s~~ 101 (481)
||+||++|+|++||+|+++++.+ ++ ++|||||||||||||||++||++|+++|+++||++||||+|+|||||+|+||+
T Consensus 1 I~~aI~~g~~~~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~ 80 (223)
T PF06415_consen 1 INKAIEDGSFFKNPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSAL 80 (223)
T ss_dssp HHHHHHTTGGGTSHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHH
T ss_pred CchHHhCCCcccCHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHH
Confidence 89999999999999999999999 54 59999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCCCCCC
Q 011613 102 GFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYL 181 (481)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDr~d~rw~r~~~ay~~~~~g~~~~~~~~~~~~i~~~y~~~~~~Defi 181 (481)
+||++|+++|+++ |.| +||||+|||| |||| |||||||++||+|||.|+|+..+.||.+||+++|++ ++|||||
T Consensus 81 ~yl~~l~~~l~~~---~~g-~IAsv~GRyy-aMDR-D~rWeRv~~Ay~alv~g~g~~~~~~~~~ai~~~Y~~-g~tDEFi 153 (223)
T PF06415_consen 81 KYLEELEEKLAEI---GIG-RIASVSGRYY-AMDR-DKRWERVEKAYDALVNGEGPNKFDDALEAIEASYAR-GITDEFI 153 (223)
T ss_dssp HHHHHHHHHHHHH---TCT-EEEEEEECCC-CT---TS-HHHHHHHHHHHCT--SE-EESSHHHHHHHHHHT-T--GGG-
T ss_pred HHHHHHHHHHHhh---CCc-eEEEEeceee-eecc-ccCHHHHHHHHHHHhcCccccccCCHHHHHHHHHcC-CCCCcCC
Confidence 9999999999998 886 9999999999 9999 999999999999999999966899999999999999 5899999
Q ss_pred CCEeeecCCCCccccccCCCEEEEeecCcchHHHHHHhcccCCCCCCccCcCCceeEEEeeeecCCCCCcccc
Q 011613 182 PPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHY 254 (481)
Q Consensus 182 ~p~~~~~~~~~~~~~i~~gD~vi~~NfR~DR~rqi~~a~~~~~f~~f~~~~~~~~~~~~mt~Y~~~~~~~v~f 254 (481)
+|++|.+ .|.++|+|||+|||||||+||||||++||.+++|++|+|...|++.|+|||+|+++++.||+|
T Consensus 154 ~P~vi~~---~~~~~i~dgD~vif~NFR~DRarql~~al~~~~f~~f~r~~~~~l~~~~mt~Yd~~~~~pv~F 223 (223)
T PF06415_consen 154 PPTVISD---KPYGGIKDGDAVIFFNFRPDRARQLTRALTDPDFDGFDRGPKPNLNFVTMTEYDEDFPFPVAF 223 (223)
T ss_dssp --EEEB----SBS----TT-EEEE--S-STTTHHHHHHHH-SS--SS--STT-SSEEEECC-SBTTTTCCCSE
T ss_pred CCEEecC---CCCCCccCCCEEEEEecChhHHHHHHHHHcCCCCccCCcCCCCCcEEEECccccCCCCCcccC
Confidence 9999975 456789999999999999999999999999999999999988999999999999999999976
No 7
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=99.95 E-value=1.1e-28 Score=244.16 Aligned_cols=182 Identities=34% Similarity=0.524 Sum_probs=151.5
Q ss_pred CCcccccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHH
Q 011613 258 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAI 337 (481)
Q Consensus 258 ~~~~~~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd~~pemsa~~vtd~ai~~i 337 (481)
+.......+.+....|+++..++++.++.+++.||+| . .+++++..+++..|+|++.++++.+++.|
T Consensus 70 ~~~~~~~~~~~~~~~~l~~~~ia~~~~~~~i~~~~~g-----~--------~v~~~~g~t~~~~~~~~~~~~~~~~~~~l 136 (252)
T PF01676_consen 70 AGDYPNLPPSFTEKYGLKGAGIAETPKIGGIADFFGG-----M--------DVISVEGATGDVDPDMSAKEIAEAAIEAL 136 (252)
T ss_dssp EEEEES-HHHHHHHCTHHEEEEEECHHHHHHHHHTTT-----E--------EEE--STSSCCGSTTTTHHHHHHHHHHHH
T ss_pred cccccccccceeeccCceecceecccccceeHHHhCC-----c--------ccccccccccccccchhhHHHHHHHHHhh
Confidence 3344556778999999999999999999999999998 1 23444467888889999999999999999
Q ss_pred HhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCcccccccCCCCCCcccCCCc
Q 011613 338 LSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNI 417 (481)
Q Consensus 338 ~~~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~e~m~~~d~~g~~~~~~G~~ 417 (481)
++.+|||+++|+.++|++||++++++|+++||.+|++|++|++++++.++++||||||||.+.+.
T Consensus 137 ~~~~~~~v~~~~~~~D~~GH~~~~~~~~~~ie~~D~~l~~l~~~~~~~~~~liiTaDHg~~~~~~--------------- 201 (252)
T PF01676_consen 137 KKDKYDFVFVHVKGTDEAGHRGDPEAYIEAIERIDRFLGRLLEALDKEDDLLIITADHGNDETMG--------------- 201 (252)
T ss_dssp HHTTSSEEEEEEEHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEESSBSTTTSB---------------
T ss_pred hcccCCeEEEeecCcchhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCccccC---------------
Confidence 98999999999999999999999999999999999999999999987889999999999987762
Q ss_pred cccccCCCceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCCCCCCCCCC
Q 011613 418 QVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP 473 (481)
Q Consensus 418 ~p~t~HT~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~em~G 473 (481)
++.||.++|||++++++.+.. .+.+ ...+.||+|||++++|++.|++|++
T Consensus 202 --~~~Ht~~~VPll~~g~~~~~~-~~~~---~~~~~di~~ti~~~~G~~~~~~~~~ 251 (252)
T PF01676_consen 202 --HTSHTREPVPLLIYGPGVRGD-SVGE---FGELADIAPTILELLGLELPEEMTS 251 (252)
T ss_dssp --SSS-B-B-EEEEEECTTEEE--SC-S---TSBCGHHHHHHHHHHTGGHHTTCHH
T ss_pred --CcCCCCceEEEEEEeCCCccC-ccCc---CCEEehHHHHHHHHcCCCchHhhcC
Confidence 368999999999999975321 2221 3578999999999999999999863
No 8
>PRK12383 putative mutase; Provisional
Probab=99.89 E-value=1.7e-22 Score=210.99 Aligned_cols=166 Identities=19% Similarity=0.303 Sum_probs=131.1
Q ss_pred ccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHHHhCCC
Q 011613 263 RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRF 342 (481)
Q Consensus 263 ~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd~~pemsa~~vtd~ai~~i~~~~~ 342 (481)
.++.+.+.++|++...|+... +.+.+ .+ ...| .+.++..+.++.+++++++.++
T Consensus 234 ~~v~~~l~~~G~~v~~VGKi~------Di~s~--------~G----------~t~~--~~~~~t~~~~~~~l~aL~~~~~ 287 (406)
T PRK12383 234 VQVPQKLYEAGVPVVLVGKVA------DIVNN--------PY----------GVSW--QNLVDTQRVMDITLDEFNTHPT 287 (406)
T ss_pred chhhhHHHHcCCCEEEEEEhH------Heecc--------CC----------cccc--cccCCHHHHHHHHHHHHhcCCC
Confidence 578899999999999994322 11111 11 0110 0234566899999999988779
Q ss_pred cEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCcccccccCCCCCCcccCCCcccccc
Q 011613 343 HQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTS 422 (481)
Q Consensus 343 dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~e~m~~~d~~g~~~~~~G~~~p~t~ 422 (481)
||+++|+.++|++||++++++|.++||.+|++|++|++++++ +++||||||||+...+ +++.
T Consensus 288 dlvfvnl~~~D~~GH~~d~~~y~~aiE~iD~~lg~ll~~L~~-~~lliITaDHG~d~~~-----------------~~t~ 349 (406)
T PRK12383 288 AFICTNIQETDLAGHAEDVARYAERLEVVDRNLARLLEAMTP-DDCLVVMADHGNDPTI-----------------GHSH 349 (406)
T ss_pred CEEEEeccCCccccccCCHHHHHHHHHHHHHHHHHHHHHhcc-CCEEEEEcCCCCCCCC-----------------CCcC
Confidence 999999999999999999999999999999999999999974 6899999999984332 2578
Q ss_pred CCCceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCCCCCCCCCC-Cceec
Q 011613 423 HTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLIEV 478 (481)
Q Consensus 423 HT~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~em~G-sLl~~ 478 (481)
||.++||||+++|+..+ ..+.. ..+++||+||||+++|++.| ++| |+++.
T Consensus 350 HTre~VPlLi~gp~i~~-~~lg~---~~slaDIapTIl~~~Gv~~p--~~G~Sfl~~ 400 (406)
T PRK12383 350 HTREVVPLLVYQKGLQA-TQLGV---RTTLSDVGATVCEFFGAPPP--QNGRSFLSS 400 (406)
T ss_pred CCCcceEEEEEECCccc-ccCCC---CcEEhhHHHHHHHHcCCCCC--CCCCcHHHH
Confidence 99999999999998632 12221 35799999999999999988 689 98764
No 9
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=99.89 E-value=5.7e-22 Score=205.26 Aligned_cols=160 Identities=18% Similarity=0.211 Sum_probs=126.0
Q ss_pred ccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHHHhCCC
Q 011613 263 RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRF 342 (481)
Q Consensus 263 ~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd~~pemsa~~vtd~ai~~i~~~~~ 342 (481)
.|+-+.|+++|+....|+.... .|-+.|. .+.. +--+..+..+.+++++++.++
T Consensus 217 pTvld~l~~aG~~V~~VGki~D-----iF~g~Gl---------t~a~------------~~~~~~~~~~~~l~aL~~~~~ 270 (381)
T TIGR01696 217 PTVLQKLKDEGHDVISIGKIAD-----IYDGEGI---------TKKV------------RTTSNMDGMDATIKEMKEDFT 270 (381)
T ss_pred CCHHHHHHHCCCeEEEEccHHh-----EecCCCc---------cccc------------CCCCHHHHHHHHHHHHhcCCC
Confidence 6999999999999999954321 1111111 1110 122456788999999988779
Q ss_pred cEEEEeCCCCcc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCcccccccCCCCCCcccCCCccccc
Q 011613 343 HQVRVNLPNSDM-VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLT 421 (481)
Q Consensus 343 dfi~vnfa~~D~-vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~e~m~~~d~~g~~~~~~G~~~p~t 421 (481)
+|+++|+.++|| +||+++.++|.++||.+|++|++|+++|++ +++|||||||||- +.. +++
T Consensus 271 ~lif~nl~d~D~~~GH~~d~~~y~~ale~vD~~Lg~ll~~L~~-~tllIITADHG~D-------p~~----------~~t 332 (381)
T TIGR01696 271 GISFTNLVDFDALWGHRRDVAGYAAALELFDRRLPELFSLLRE-DDLLIITADHGND-------PTW----------TGT 332 (381)
T ss_pred CEEEEEeCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcc-CCEEEEECCCCCC-------CCC----------CCC
Confidence 999999999998 799999999999999999999999999975 6799999999981 100 246
Q ss_pred cCCCceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCCCCCC
Q 011613 422 SHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPS 469 (481)
Q Consensus 422 ~HT~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~ 469 (481)
.||.++||||++||+++.+..+.. ..+++||+||||++||++.|.
T Consensus 333 ~HTre~VPlIi~gp~i~~g~~l~~---~~slaDIapTIldllGv~~p~ 377 (381)
T TIGR01696 333 DHTREYIPVLVYSPKVKPGHSLGH---RETFADIGATIADNFGTSDPE 377 (381)
T ss_pred cCCCCCEeEEEEECCCCCCceeCC---CCEehhHHHHHHHHcCcCCCC
Confidence 899999999999998654433332 467999999999999999884
No 10
>PRK05362 phosphopentomutase; Provisional
Probab=99.89 E-value=4.2e-22 Score=207.78 Aligned_cols=166 Identities=20% Similarity=0.259 Sum_probs=130.1
Q ss_pred ccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHHH-hCC
Q 011613 263 RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAIL-SRR 341 (481)
Q Consensus 263 ~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd~~pemsa~~vtd~ai~~i~-~~~ 341 (481)
.|+.+.|+++|+++..++.... .|-+.|..... +.-+..+++++++++++ +.+
T Consensus 224 ~Tl~d~L~~aG~~v~~VGki~D-----iFa~~G~t~~~---------------------~~~~~~~~~~~ale~L~~~~~ 277 (394)
T PRK05362 224 PTVLDKLKEAGGEVIAVGKIAD-----IFAGQGITEKV---------------------KTKSNMDGMDATIEEMKEAGD 277 (394)
T ss_pred CCHHHHHHHCCCeEEEEEehhh-----cccCCCccccc---------------------CCCCHHHHHHHHHHHHHhCCC
Confidence 6999999999999999975332 11111111110 11134578899999998 778
Q ss_pred CcEEEEeCCCCccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCcccccccCCCCCCcccCCCcccc
Q 011613 342 FHQVRVNLPNSDMV-GHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVL 420 (481)
Q Consensus 342 ~dfi~vnfa~~D~v-GHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~e~m~~~d~~g~~~~~~G~~~p~ 420 (481)
++|+++|+.++||+ ||++++++|.++||.+|++|++|+++|++ +++||||||||+.... +.
T Consensus 278 ~~fvfvn~~~~D~~~GH~~~~~~y~~ale~~D~~lg~ll~~L~~-~tlliiTaDHG~d~t~-----------------~g 339 (394)
T PRK05362 278 NGLVFTNLVDFDSLYGHRRDVAGYAAALEEFDARLPELLAALKE-DDLLIITADHGNDPTW-----------------PG 339 (394)
T ss_pred CcEEEEecccCccccCCcCCHHHHHHHHHHHHHHHHHHHHHhcc-CCEEEEeCCCCCCCCC-----------------CC
Confidence 99999999999995 99999999999999999999999999976 6899999999972110 24
Q ss_pred ccCCCceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCCCCCCCCCC-Cceec
Q 011613 421 TSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLIEV 478 (481)
Q Consensus 421 t~HT~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~em~G-sLl~~ 478 (481)
+.||.++||||+++|+.+ +..+.. ..+++||+||||+++|++.|. +| |+++.
T Consensus 340 t~HT~e~VPlIi~gp~v~-~~~l~~---~~sl~DI~pTia~l~Gv~~P~--~G~Sfl~~ 392 (394)
T PRK05362 340 TDHTREYVPLLVYGPKFK-GGSLGH---RETFADIGATIADNFGVEPME--YGKSFLDE 392 (394)
T ss_pred CCCCCCceeEEEEECCCC-ccEECC---CCEehhHHHHHHHHcCcCCCC--CCCcHHHh
Confidence 689999999999999864 323332 467999999999999999885 79 88754
No 11
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.88 E-value=2.2e-22 Score=211.65 Aligned_cols=178 Identities=22% Similarity=0.301 Sum_probs=140.1
Q ss_pred HHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCccccC--------------CCccC------C
Q 011613 266 GEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFN--------------VQPKM------K 325 (481)
Q Consensus 266 ~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd--------------~~pem------s 325 (481)
.++|.+|.+++.|.++.+..++..|+|++|.....+ ++++++.+....++.++ ..|+. +
T Consensus 201 ~~iL~~HPvN~~R~~~G~~paN~iwlwG~G~~p~lp-~f~er~gl~ga~is~~~l~kGLa~~~Gm~~~~vpg~tg~~~t~ 279 (412)
T PRK04024 201 YEVLDDHPVNKERRKQGLPPANIILLRGAGEVPEIP-KFTEKYGLKAACVAGTALIKGIARMVGMDVITVEGATGGKDTN 279 (412)
T ss_pred HHHHhcCcchHHHHhcCCCCceEEEecCCCCCCCCC-CHHHhcCCceEEEeChHHHHHHHHHcCCceeccCCCcCCCCCC
Confidence 788999999999999999999999999999865553 35666322110011100 01221 4
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCcccccccC
Q 011613 326 ALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRN 405 (481)
Q Consensus 326 a~~vtd~ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~e~m~~~d 405 (481)
....++.+++.|+ +|||+++||+++|++||++++++++++||.+|++|++|+++++..+++++|||||||++.+
T Consensus 280 ~~~k~~~~~~~l~--~~Dfv~vh~~~~D~~GH~gd~~~k~~aiE~iD~~l~~il~~l~~~~~~liITaDHgtp~~~---- 353 (412)
T PRK04024 280 YMAKAKAAVELLK--EYDFVLLNIKGTDEAGHDGDFEGKVEVIEKIDKMLGYILDNLDLDEVYIAVTGDHSTPVEV---- 353 (412)
T ss_pred HHHHHHHHHHHhc--cCCEEEEeccCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEecCCCCCccc----
Confidence 5667888999995 5999999999999999999999999999999999999999997567899999999996432
Q ss_pred CCCCCcccCCCccccccCCCceeeEEEEcCCCCC-C-ccccc-cCCCccc-----ccHHHHHHHHhCC
Q 011613 406 KSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPD-D-VKFRT-DLPNGGL-----ANVAATFINLHGY 465 (481)
Q Consensus 406 ~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~~~-~-~~~~~-~~~~g~L-----~DIaPTIL~llGi 465 (481)
+.||.+|||||+++++++. + ..|.| +|..++| .|+++.+|++++.
T Consensus 354 ---------------~~HT~~pVP~ii~g~~v~~d~~~~f~E~~~~~g~l~~~~g~~lm~~~l~~~~~ 406 (412)
T PRK04024 354 ---------------KDHSGDPVPILIYGPGVRVDDVEKFNELSAAKGGLGRIRGLDVMPILLDLMNR 406 (412)
T ss_pred ---------------ccCCCCCEeEEEEcCCccCCCCCccCHHHHhCCCCCcccHHHHHHHHHHHhch
Confidence 5799999999999999842 2 34555 4556777 5999999998875
No 12
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=99.83 E-value=1.4e-20 Score=197.17 Aligned_cols=176 Identities=20% Similarity=0.242 Sum_probs=133.0
Q ss_pred ccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCccccCC--------------Ccc-----
Q 011613 263 RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV--------------QPK----- 323 (481)
Q Consensus 263 ~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd~--------------~pe----- 323 (481)
+..-++|.+|.+|+.|.++.++.++..|+|++|.....+ +..+|+.+....++.+++ .|+
T Consensus 192 ~~~~~iL~~HpvN~~R~~~G~~paN~iwl~G~G~~p~l~-~f~er~gl~~a~ia~~~l~kGLa~~~Gm~~~~v~gatg~~ 270 (396)
T TIGR00306 192 LESAEVLQNHPINTKRAKKGKGPANMILPRGAGRMPRVE-SFKERYGLRGAMIAEVDLIKGLARLIGMDVIRVEGATGGI 270 (396)
T ss_pred HHHHHHHhcCcchHHHHhcCCCCceEEEecCCCCCCCCC-CHHHhcCCceEEEechHHHHHHHHHcCCeeecCCcccccc
Confidence 445788999999999999999999999999999755553 355664221100111111 111
Q ss_pred -CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCccccc
Q 011613 324 -MKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMV 402 (481)
Q Consensus 324 -msa~~vtd~ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~e~m~ 402 (481)
-+....+++++++++ +|||+++||.++|++||++++++++++||.+|+++++++++++..+++++|||||||++.
T Consensus 271 dt~~~~k~~~~~~~l~--~yDfv~v~~~~~D~aGH~gd~~~k~~aIE~iD~~l~~~l~~l~~~~~~liiTaDHgtp~~-- 346 (396)
T TIGR00306 271 DTDYRGKVRALILALE--EYDFVLVHTKGPDEAGHDGDPELKVRAIEKIDSKIVGPLLALDLDETRLILTADHSTPVE-- 346 (396)
T ss_pred cccHHHHHHHHHHHhh--cCCEEEEEecCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhCCCEEEEeCCCCCCCC--
Confidence 134456677888885 599999999999999999999999999999999999999999877889999999999732
Q ss_pred ccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCC-C-ccccc-cCCCccc-----ccHHHHHH
Q 011613 403 KRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPD-D-VKFRT-DLPNGGL-----ANVAATFI 460 (481)
Q Consensus 403 ~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~~~-~-~~~~~-~~~~g~L-----~DIaPTIL 460 (481)
.+.||.+|||||+++++++. + ..|.| +|..++| .|+++.+|
T Consensus 347 -----------------~~~Ht~~pVP~ii~g~~~~~d~~~~f~E~~~~~g~l~~~~g~~lm~~~l 395 (396)
T TIGR00306 347 -----------------VKDHSADPVPIVIVGPGVRVDEVKSFNEFACRKGALGRIRGEDLMDILL 395 (396)
T ss_pred -----------------CCCCCCCCeeEEEEeCCccCCCCCCcChHHHhCCCCCcccHHHHHHHHh
Confidence 36899999999999999842 2 34555 4555665 46666665
No 13
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.79 E-value=3.4e-19 Score=186.86 Aligned_cols=178 Identities=25% Similarity=0.316 Sum_probs=131.2
Q ss_pred cccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCccccCC--------------Ccc----
Q 011613 262 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV--------------QPK---- 323 (481)
Q Consensus 262 ~~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd~--------------~pe---- 323 (481)
.+...++|.+|.+|+.|.++.+..++..|+|++|.....+ +.++++......++.+++ .|.
T Consensus 187 ~~~~~~~L~~HPvN~~R~~~G~~paN~iwlwG~G~~p~~p-~f~e~~gl~~a~ia~~~l~kGla~~~Gm~~~~vpgatg~ 265 (395)
T PRK04200 187 MLSSQEILEDHPVNLKRIEEGKLPANSIWLWGQGYAPKMP-SFKEKYGLKGAVISAVDLLKGIGIYAGLDVIEVPGATGY 265 (395)
T ss_pred HHHHHHHHHhCcccHHHHHcCCCCceEEEecCCCCCCCCC-CHHHhcCCceEEEeccHHHHHHHHHcCCccccCCCcccc
Confidence 3446788999999999999999999999999999755553 345554211100111100 011
Q ss_pred --CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHh-cCcEEEEecCCCCcc
Q 011613 324 --MKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEA-VKIIIDAIEK-VGGIYLVTADHGNAE 399 (481)
Q Consensus 324 --msa~~vtd~ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~-lGrLl~al~~-~gt~vIITSDHGn~e 399 (481)
......++.++++++ +|||+++|+.++|++||++++++++++||.+|++ +++|++++++ .+++++||||||++.
T Consensus 266 ~dt~~~~k~~~a~~~l~--~~DfV~vh~~~~D~aGH~gd~~~kv~aiE~lD~~~~~~ll~al~~~~~~~l~it~DH~tp~ 343 (395)
T PRK04200 266 LDTNYEGKAEAALEALK--THDFVFVHVEAPDEAGHEGDLEAKIKAIEDIDERVVGPILEALKKYEDYRILVLPDHPTPI 343 (395)
T ss_pred cccchHHHHHHHHHHhc--cCCEEEEEecCcchhhccCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCEEEEeccCCcCC
Confidence 123455678888885 5999999999999999999999999999999998 5589999975 567999999999731
Q ss_pred cccccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCC-C-ccccc-cCCCccc-----ccHHHHHHH
Q 011613 400 DMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPD-D-VKFRT-DLPNGGL-----ANVAATFIN 461 (481)
Q Consensus 400 ~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~~~-~-~~~~~-~~~~g~L-----~DIaPTIL~ 461 (481)
+++.||.+|||||+++++++. + ..|.| +|..++| .++++.+|+
T Consensus 344 -------------------~~~~Ht~~pVP~ii~g~~~~~d~~~~f~E~~~~~g~l~~~~g~~lm~~~l~ 394 (395)
T PRK04200 344 -------------------ELKTHTADPVPFLIYGEGIEPDGVQTFDEKSARKGGLGLVEGCELMELLLK 394 (395)
T ss_pred -------------------CCCccCCCCEeEEEEcCCcCCCCCCccCHHHHcCCCcccccHHHHHHHHhh
Confidence 257899999999999998742 2 24665 4555665 466666653
No 14
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=99.77 E-value=1.1e-18 Score=183.05 Aligned_cols=177 Identities=22% Similarity=0.294 Sum_probs=129.5
Q ss_pred cccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCccccCC--------------Ccc----
Q 011613 262 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV--------------QPK---- 323 (481)
Q Consensus 262 ~~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd~--------------~pe---- 323 (481)
.+..-++|.+|.+|+.|.++.+..++..|+|++|.....+ +.++++......++.+++ .|.
T Consensus 188 ~~~~~~lL~~HPvN~~R~a~G~~paN~iwlwG~G~~p~~p-~f~e~~gl~~a~ia~~~l~kGla~~~Gm~~~~vpgatg~ 266 (396)
T TIGR02535 188 ILASAEILKNHPVNLKRQSAGKDPANMIWLWGSGGAPKMP-TFSERYGIRGAMISAVDLLKGIGIYAGLERIEVEGATGY 266 (396)
T ss_pred HHHHHHHHHhCcchHHHHhcCCCCceEEEecCCCCCCCCC-CHHHhcCCceEEEeccHHHHHHHHHcCCccccCCccccc
Confidence 3446788999999999999999999999999999855553 244444211100111111 011
Q ss_pred --CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhcC--cEEEEecCCCCc
Q 011613 324 --MKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEA-VKIIIDAIEKVG--GIYLVTADHGNA 398 (481)
Q Consensus 324 --msa~~vtd~ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~-lGrLl~al~~~g--t~vIITSDHGn~ 398 (481)
-+....++.++++++ +|||+++|+.++|++||++++++++++||.+|++ +++|++++++.| .+++||||||++
T Consensus 267 ~dt~~~~k~~~~~~~l~--~~Dfv~vh~~~~D~aGH~gd~~~kv~aIE~lD~~~~~~ll~al~~~~~~~~~~vt~DH~tp 344 (396)
T TIGR02535 267 LDTNYEGKVRAALEALE--TYDFVVVHVEAPDEAGHEGDLEAKIKAIELIDSRIVGPLLEALSDRDEPFRILVLPDHPTP 344 (396)
T ss_pred cccchHHHHHHHHHHHh--hCCEEEEEeCCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeCccC
Confidence 123345677888885 5999999999999999999999999999999997 558999997654 499999999984
Q ss_pred ccccccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCC-C-ccccc-cCCCccc-----ccHHHHHH
Q 011613 399 EDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPD-D-VKFRT-DLPNGGL-----ANVAATFI 460 (481)
Q Consensus 399 e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~~~-~-~~~~~-~~~~g~L-----~DIaPTIL 460 (481)
. +++.||.+|||||+++++++. + ..|.| +|..|+| .|+++.+|
T Consensus 345 ~-------------------~~~~Ht~~pVP~ii~g~~~~~d~~~~f~E~~~~~g~l~~~~g~~lm~~~~ 395 (396)
T TIGR02535 345 L-------------------ELKTHTAEPVPFLLYGKGIESDSVKTFDEKSARRGGIGFVKGCELMDALI 395 (396)
T ss_pred C-------------------CCCccCCCCEeEEEEeCCcCCCCCCccCHHHHcCCCcccccHHHHHHHHh
Confidence 2 247899999999999998742 2 35665 4555665 46666654
No 15
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=99.72 E-value=2.9e-17 Score=167.37 Aligned_cols=178 Identities=22% Similarity=0.304 Sum_probs=140.9
Q ss_pred HHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCccccCCC-------------cc-------C
Q 011613 265 SGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQ-------------PK-------M 324 (481)
Q Consensus 265 l~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd~~-------------pe-------m 324 (481)
..|+|++|.++..|..+.+..++..++|++|..+.++ ++.+++.+....++.+++. ++ -
T Consensus 203 ~~eiL~~hpvN~~R~~~Gk~paN~iL~rgag~~P~ip-~F~e~yglk~a~Ia~~~l~KGlar~~GmDvi~vegatG~~dt 281 (408)
T COG3635 203 AYEILRDHPVNLKRRKQGKLPANAILLRGAGRYPKIP-SFQERYGLKGACIAAVPLIKGLARLVGMDVIEVEGATGYIDT 281 (408)
T ss_pred HHHHHhcCcccHHHHhcCCCCccEEEEcCCCCCCCCC-CHhHhhCcceEEEEecHHHHhHHHHhCCceeecccccCccCc
Confidence 5789999999999999999999999999999877665 3667765444333333331 11 1
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCccccccc
Q 011613 325 KALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKR 404 (481)
Q Consensus 325 sa~~vtd~ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~e~m~~~ 404 (481)
.....+..++++++ +|||++||+..+|.+||.|+++.++++||.+|+.++.+++ +......++||+||-++...
T Consensus 282 n~~~k~k~a~eal~--~yDfv~vhik~tDeagHdG~~e~Kv~~IE~iD~~i~pll~-~~~~~~~i~vt~DHsTPv~v--- 355 (408)
T COG3635 282 NYRGKAKAAIEALK--EYDFVFVHIKATDEAGHDGDFEGKVRVIEDIDKAIGPLLD-LDLDEDVIAVTGDHSTPVSV--- 355 (408)
T ss_pred cHHHHHHHHHHHHh--hCCEEEEEeccCccccCCCCHHHhHHHHHHHHHHhhhhhc-cccCCcEEEEeCCCCCcccc---
Confidence 23456778888885 5999999999999999999999999999999999999998 55456899999999987332
Q ss_pred CCCCCCcccCCCccccccCCCceeeEEEEcCCCC-CC-ccccc-cCCCccc-----ccHHHHHHHHhCC
Q 011613 405 NKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLP-DD-VKFRT-DLPNGGL-----ANVAATFINLHGY 465 (481)
Q Consensus 405 d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~~-~~-~~~~~-~~~~g~L-----~DIaPTIL~llGi 465 (481)
..||..|||++|+++... .. ..|.+ +|..|+| .||+|-+|++++.
T Consensus 356 ----------------k~Hs~dPVPili~~~~v~~D~v~~F~E~~~~~G~Lgri~g~dlm~ill~~~~r 408 (408)
T COG3635 356 ----------------KDHSGDPVPILIYGPYVRRDDVKRFDEFSCARGSLGRIRGSDLMPILLDLAGR 408 (408)
T ss_pred ----------------cccCCCCccEEEecCCcccCccceecHhhhhcCCcceeehHHHHHHHHHhhcC
Confidence 579999999999999863 22 25555 5666777 6999999999873
No 16
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=2.2e-16 Score=160.50 Aligned_cols=168 Identities=23% Similarity=0.318 Sum_probs=129.6
Q ss_pred CCCcccccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHH
Q 011613 257 SPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKA 336 (481)
Q Consensus 257 ~~~~~~~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd~~pemsa~~vtd~ai~~ 336 (481)
+|+. .|+-+.|.++|..+.+|+ +..+-| .+. .+.. .. ..-+..+..|.+++.
T Consensus 223 ~P~~--~tvl~~L~e~g~~vi~IG--------------KI~DI~--~~~---Git~------~~-~~~~n~~~~d~tl~~ 274 (397)
T COG1015 223 KPFA--PTVLDKLKEAGRPVIAIG--------------KIADIY--AGQ---GITE------KV-KAVSNMDGMDVTLEE 274 (397)
T ss_pred CCCh--hhHHHHHHHcCCceEEEe--------------eHHhhh--ccc---cccc------cc-cCCCcHHHHHHHHHH
Confidence 5543 699999999999999884 333334 211 1110 01 112455788999999
Q ss_pred HHhCC-CcEEEEeCCCCc-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCcccccccCCCCCCcccC
Q 011613 337 ILSRR-FHQVRVNLPNSD-MVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKD 414 (481)
Q Consensus 337 i~~~~-~dfi~vnfa~~D-~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~e~m~~~d~~g~~~~~~ 414 (481)
+++.+ -.|++.|+-..| .+||+.+...|.+++|.+|+.|.+|++.|++. .++|||||||| |+.-
T Consensus 275 ~~~~~~~~~vFtNlVdfD~~yGHRrDv~gYa~aLe~FD~rL~e~~~~l~ed-DlLiiTADHGn-------DPT~------ 340 (397)
T COG1015 275 MKTAEFNGLVFTNLVDFDSLYGHRRDVAGYAAALEEFDRRLPELIENLRED-DLLIITADHGN-------DPTW------ 340 (397)
T ss_pred HhcCCCCcEEEEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEecCCCC-------CCCC------
Confidence 98544 459999999999 69999999999999999999999999999885 59999999998 4332
Q ss_pred CCccccccCCCceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCCCCCCCCCC-Cce
Q 011613 415 GNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLI 476 (481)
Q Consensus 415 G~~~p~t~HT~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~em~G-sLl 476 (481)
++|.||...||+|+++|+++++ .+.. ..+++||..||++.||+++|. .| |++
T Consensus 341 ----~gTdHTRE~iPvl~y~~~~k~~-~lg~---r~tfADiGaTvA~~fgv~~~~--~G~sfl 393 (397)
T COG1015 341 ----GGTDHTREYIPVLVYGPGLKPG-SLGT---RETFADIGATVADNFGVSPPQ--YGKSFL 393 (397)
T ss_pred ----CCCCccccccceEEEcCCccCC-cccc---cccHHHHHHHHHHHhCCCCcc--ccHHHH
Confidence 3589999999999999998654 3332 357899999999999999885 45 543
No 17
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.67 E-value=3.2e-16 Score=163.35 Aligned_cols=156 Identities=15% Similarity=0.243 Sum_probs=118.4
Q ss_pred ccceEEecCCCccccCCCCCcceEeccCCCccccCC-------------CccCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Q 011613 285 FGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV-------------QPKMKALEIAERAKKAILSRRFHQVRVNLPN 351 (481)
Q Consensus 285 ~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd~-------------~pemsa~~vtd~ai~~i~~~~~dfi~vnfa~ 351 (481)
.++..|+|++|....++ ++++++.+....++..++ .|..+....++.++++++ +|||+++|+..
T Consensus 213 pAN~il~rg~G~~p~lp-~F~e~~Glkga~Ia~~~l~kGi~~~~Gm~~i~~ga~~~~k~~~a~~~l~--~~DfV~vhvk~ 289 (395)
T PRK04135 213 KANFALLRGFSKKPDFP-SFEEVYKLKAAAIASYPMYRGLAKLVGMDVLPTGQTLEDEIKTLKENWN--DYDFFFLHVKK 289 (395)
T ss_pred cccEEEecCCCCCCCCC-CHHHHhCCceEEEehhHHHHHHHHHcCCeecCCCCCHHHHHHHHHHHHh--cCCEEEEEecc
Confidence 78999999999866664 366666432211111111 144466777888888884 49999999999
Q ss_pred CccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCcccccccCCCCCCcccCCCccccccCCCceeeEE
Q 011613 352 SDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIA 431 (481)
Q Consensus 352 ~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~I 431 (481)
+|.+||.++++.++++||.+|++|..|+ .++ .++|+|||||++++.. ..||.+||||+
T Consensus 290 ~DeaGH~gd~~~Kv~~IE~iD~~l~~ll-~l~--~~~ivVT~DH~TP~~~-------------------~~Hs~dPVP~l 347 (395)
T PRK04135 290 TDSYGEDGNFEEKVKVIEEVDALLPEIL-ALK--PDVLVITGDHSTPAVL-------------------KGHSWHPVPLL 347 (395)
T ss_pred CchhhccCCHHHHHHHHHHHHHHHHHHh-cCC--CcEEEEeCCCCCcccc-------------------cccCCCCEeEE
Confidence 9999999999999999999999999988 553 4589999999997642 47999999999
Q ss_pred EEcCCCCC-C-ccccc-cCCCccc-----ccHHHHHHHHhCC
Q 011613 432 IGGPGLPD-D-VKFRT-DLPNGGL-----ANVAATFINLHGY 465 (481)
Q Consensus 432 i~~p~~~~-~-~~~~~-~~~~g~L-----~DIaPTIL~llGi 465 (481)
+++++.+. + ..|.| +|..++| .|+++.+|++++.
T Consensus 348 i~g~~~~~D~v~~F~E~~~~~G~L~~~~G~~lm~~~l~~~~~ 389 (395)
T PRK04135 348 LYSKYCRPDLSQRFTERECARGGLGHIPAVDLMPLALAHALR 389 (395)
T ss_pred EEcCCCCCCCCCccCHHHHcCCCcCcccHHHHHHHHHHhhhh
Confidence 99998742 2 34665 4555665 5999999998775
No 18
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=99.56 E-value=2.7e-14 Score=154.42 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCCcccccccCCCCCCcccCCCccccccCCCceeeEEEEcCCC-
Q 011613 363 ATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGL- 437 (481)
Q Consensus 363 a~~~aIe~vD~~lGrLl~al~~~g----t~vIITSDHGn~e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~- 437 (481)
.|..+|+.+|.+||+|+++|++.| |+||||||||.. + .++|. .++ ...+....+|||||++|+.
T Consensus 254 ~Y~~~v~~~D~~iG~il~~L~~~g~~dnTivvf~sDHG~~--~---G~~g~----~~K--~~~ye~~~~vPlii~~p~~~ 322 (500)
T TIGR03417 254 AYFGAISYLDDKIGELLQTLEETRQADDTIVLFTSDHGDM--L---GERGL----WYK--MSFFEGSARVPLMVHAPGRF 322 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCCcEEEEECCCchh--h---ccCCc----ccc--cCcccccceEeEEEEeCCCC
Confidence 467789999999999999999875 899999999953 3 23441 122 1346778899999999983
Q ss_pred CCCccccccCCCcccccHHHHHHHHhCCCCCC---CCCC-Cceec
Q 011613 438 PDDVKFRTDLPNGGLANVAATFINLHGYEAPS---DYEP-SLIEV 478 (481)
Q Consensus 438 ~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~---em~G-sLl~~ 478 (481)
.++ ...+ ..+++||+||||+++|++.|. .|+| ||+++
T Consensus 323 ~~~-~~~~---~v~~~Di~pTil~l~g~~~~~~~~~~~G~SL~~~ 363 (500)
T TIGR03417 323 APG-RVAA---PVSTVDLLPTLVDLAGGDMDEVLPWTDGRSLVPH 363 (500)
T ss_pred CCc-ccCC---ceeehhHHHHHHHHhCCCCcccCCCCCCeehHHH
Confidence 232 2222 357899999999999999994 4999 98865
No 19
>PRK13759 arylsulfatase; Provisional
Probab=99.53 E-value=8e-14 Score=150.25 Aligned_cols=139 Identities=17% Similarity=0.231 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHh---CCCcEEEEeCCCCcc-----------CCCC---------------------------CC----
Q 011613 326 ALEIAERAKKAILS---RRFHQVRVNLPNSDM-----------VGHT---------------------------GD---- 360 (481)
Q Consensus 326 a~~vtd~ai~~i~~---~~~dfi~vnfa~~D~-----------vGHt---------------------------g~---- 360 (481)
+..+++.++++|++ .+|.|++++|..|-. ..-. +.
T Consensus 182 ~~~~~~~a~~~l~~~~~~kPfFl~v~~~~pH~P~~~p~~~~~~y~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (485)
T PRK13759 182 TNWVGSESIEFLRRRDPTKPFFLKMSFARPHSPYDPPKRYFDMYKDADIPDPHIGDWEYAEDQDPEGGSIDALRGNLGEE 261 (485)
T ss_pred cHHHHHHHHHHHHhCCCCCCeEEEeCCCCCcCCCCCCHHHHHhccccCCCCCCCCchhhhcccccccccchhhccCCCHH
Confidence 45578999999975 469999999876431 1100 00
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCCcccccccCCCCCCcccCCCccccccCCCceeeEE
Q 011613 361 -----IEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIA 431 (481)
Q Consensus 361 -----~~a~~~aIe~vD~~lGrLl~al~~~g----t~vIITSDHGn~e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~I 431 (481)
...|..+|+.+|.+||+|+++|++.| |+||||||||.. +. ++|.- .++ ..+....+||||
T Consensus 262 ~~~~~~~~Y~~~i~~~D~~iG~l~~~l~~~g~~dnTiiv~tsDHG~~--~g---~~~~~--~k~----~~~e~~~rVPli 330 (485)
T PRK13759 262 YARRARAAYYGLITHIDHQIGRFLQALKEFGLLDNTIILFVSDHGDM--LG---DHYLF--RKG----YPYEGSAHIPFI 330 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCeEEEEECCCccc--cc---ccccc--cCC----ccccccceeeEE
Confidence 23467789999999999999999875 899999999953 32 23310 122 124566799999
Q ss_pred EEcCCC----CCCccccccCCCcccccHHHHHHHHhCCCCCCCCCC-Cceec
Q 011613 432 IGGPGL----PDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLIEV 478 (481)
Q Consensus 432 i~~p~~----~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~em~G-sLl~~ 478 (481)
|++|+. ..+....+ ..+++||+||||+++|++.|..++| ||+++
T Consensus 331 i~~p~~~~~~~~g~~~~~---~v~~~Di~pTil~l~g~~~p~~~~G~sl~~~ 379 (485)
T PRK13759 331 IYDPGGLLAGNRGTVIDQ---VVELRDIMPTLLDLAGGTIPDDVDGRSLKNL 379 (485)
T ss_pred EecCCcccccCCCceecC---cceecchHHHHHHHhCCCCCcCcCCccchhh
Confidence 999973 12222221 3568999999999999999999999 98876
No 20
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=99.40 E-value=1.3e-11 Score=121.97 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=87.4
Q ss_pred cCCHHHHHHHHHHHH--HhCCCcEEEEeCCCCccC--CCC------------------CCHHHHHHHHHHHHHHHHHHHH
Q 011613 323 KMKALEIAERAKKAI--LSRRFHQVRVNLPNSDMV--GHT------------------GDIEATVVACKAADEAVKIIID 380 (481)
Q Consensus 323 emsa~~vtd~ai~~i--~~~~~dfi~vnfa~~D~v--GHt------------------g~~~a~~~aIe~vD~~lGrLl~ 380 (481)
.+....+.+.+.+.| +.++|.|+++++..+-.. ... .....|..+|..+|++|+++++
T Consensus 150 ~~~d~~~~~~~~~~l~~~~~~p~f~~~~~~~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~~D~~l~~~~~ 229 (308)
T PF00884_consen 150 GYSDDALFDYAIDFLLNEDDKPFFLFIHTMGPHGPYPYPPDYAEKFPKFSPDIPDKDREMRNNYLNAIAYVDDQLGRFIE 229 (308)
T ss_dssp CEHHHHHHHHHHHHHHCTTTSSEEEEEEE-TTSSSTCTTCCHHHGGTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhcccccceeEEeeccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHhhhhhh
Confidence 456677889999997 446789999988665431 000 1124677899999999999999
Q ss_pred HHHhcC----cEEEEecCCCCcccccccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCCCccccccCCCcccccHH
Q 011613 381 AIEKVG----GIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVA 456 (481)
Q Consensus 381 al~~~g----t~vIITSDHGn~e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIa 456 (481)
.|++.+ |+||||||||..-........+ .++. .......+|||+|++|+.... ...+ ...+..||+
T Consensus 230 ~l~~~~~~d~TiiiitsDHG~~~~e~~~~~~~----~~~~---~~~~~~~~vP~~i~~p~~~~~-~~~~--~~~s~~Di~ 299 (308)
T PF00884_consen 230 YLKEQGLYDNTIIIITSDHGESFGENGHYFHG----GKGN---DLYEESYHVPLIIYWPGGEPQ-QTID--RLVSHIDIA 299 (308)
T ss_dssp HHHHTTCGGGEEEEEEESSSSSTGGHHTTSSS----STTH---SSSHHHHBEEEEEECTTSSSC-EEEC--S-EEGGGHH
T ss_pred hhhhcCCcccceeEEecCcCcccccccccccc----cccc---cchhhccccceEEEcCCCCCC-cEEC--CeEEhHHHH
Confidence 997765 8999999999742110000000 0110 112234589999999986433 1221 246789999
Q ss_pred HHHHHHhCC
Q 011613 457 ATFINLHGY 465 (481)
Q Consensus 457 PTIL~llGi 465 (481)
||||++|||
T Consensus 300 pTll~l~Gi 308 (308)
T PF00884_consen 300 PTLLDLLGI 308 (308)
T ss_dssp HHHHHHTT-
T ss_pred HHHHHHhCC
Confidence 999999997
No 21
>KOG3731 consensus Sulfatases [Carbohydrate transport and metabolism]
Probab=99.40 E-value=2.3e-12 Score=133.63 Aligned_cols=102 Identities=22% Similarity=0.373 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCCcccccccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCC
Q 011613 364 TVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPD 439 (481)
Q Consensus 364 ~~~aIe~vD~~lGrLl~al~~~g----t~vIITSDHGn~e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~~~ 439 (481)
..+.+..+|+.|.+|.+.+.+.| |.||.|||||.. . +..| +.+|+. ..++-..+|||+|+||++++
T Consensus 275 rlQtlqSvd~sve~l~n~l~elgeLdnTyivytsDhGyh--l---Gqfg---l~kgks--~pyEfdiRVPf~iRgP~v~~ 344 (541)
T KOG3731|consen 275 RLQTLQSVDDSVERLYNLLGELGELDNTYIVYTSDHGYH--L---GQFG---LWKGKS--MPYEFDIRVPFLIRGPGVAP 344 (541)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhcccceEEEEEcCCccc--c---cccc---cccCCC--CceeEeeeeeEEeeCCCCCc
Confidence 35678899999999999998865 899999999975 1 1222 145553 33667789999999999866
Q ss_pred CccccccCCCcccccHHHHHHHHhCCCCCCCCCC-Cceec
Q 011613 440 DVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLIEV 478 (481)
Q Consensus 440 ~~~~~~~~~~g~L~DIaPTIL~llGi~~P~em~G-sLl~~ 478 (481)
+..+.+ -...+|+|||||+++|+|.|+.|+| ||+++
T Consensus 345 ~~~~~~---Iv~niDlaPTilDiAGlp~p~~mdg~sll~l 381 (541)
T KOG3731|consen 345 NKTVNE---IVLNIDLAPTILDIAGLPKPACMDGRSLLPL 381 (541)
T ss_pred cccchh---hheeccccchhhhhcCCCCcccccccchhhh
Confidence 543332 2346899999999999999999999 99876
No 22
>COG3119 AslA Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]
Probab=99.35 E-value=3e-12 Score=137.80 Aligned_cols=104 Identities=23% Similarity=0.348 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCC-cccccccCCCCCCcc-cCCCccccccCCCceeeEEEEcC
Q 011613 362 EATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGN-AEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGP 435 (481)
Q Consensus 362 ~a~~~aIe~vD~~lGrLl~al~~~g----t~vIITSDHGn-~e~m~~~d~~g~~~~-~~G~~~p~t~HT~~~VP~Ii~~p 435 (481)
..|..+|+.+|.+||||+++|++.| |+||||||||- ...+ +.+++ .++ ....+..+|||||.||
T Consensus 260 ~~Y~a~v~~~D~~iGrll~~L~~~g~~DnTivvftsDhG~~~~~~------~~~~~~~k~----~~~egg~~VPliI~~P 329 (475)
T COG3119 260 TVYAACVRYLDDQIGRLLDALKELGLLDNTIVVFTSDHGAWLGAH------GTPFRGYKG----TLYEGGTRVPLIIRWP 329 (475)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhCCccCcEEEEeCCCCCcccCC------CCccccccc----ccccCcccceEEEecc
Confidence 4567789999999999999999987 89999999993 2111 11212 222 2566788999999999
Q ss_pred CC-CCCccccccCCCcccccHHHHHHHHhCCCCCCCCCC-Ccee
Q 011613 436 GL-PDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP-SLIE 477 (481)
Q Consensus 436 ~~-~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~em~G-sLl~ 477 (481)
+. +++....+. ..+.+||+||+|+++|++.|...+| ++.+
T Consensus 330 g~i~~~g~~~~~--~v~~~Di~PTll~~aG~~~~~~~~G~~~~~ 371 (475)
T COG3119 330 GGIKPGGRVVDA--LVSLIDLLPTLLDAAGVPPPKDLDGQSLPP 371 (475)
T ss_pred CccCCCCccccc--cchhhHHHHHHHHHcCCCCcccccccccCc
Confidence 85 232233331 3557999999999999999999999 7765
No 23
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=99.27 E-value=9.6e-11 Score=130.66 Aligned_cols=193 Identities=16% Similarity=0.179 Sum_probs=114.3
Q ss_pred ccHHHHHHhCCcceEEeeccc-cccceEEec-CCCccccCCCCCcc-eEeccCCCccccCCCccCCHHHHHHHHHHHHH-
Q 011613 263 RTSGEYLVHNGVRTFACSETV-KFGHVTFFW-NGNRSGYFDSNLEE-YVEIPSDSGITFNVQPKMKALEIAERAKKAIL- 338 (481)
Q Consensus 263 ~tl~e~Ls~~G~~q~riaete-K~ahvtfF~-nGg~e~~~~~~ge~-r~lvpsp~v~tyd~~pemsa~~vtd~ai~~i~- 338 (481)
.+|+++|+++||++..+.... .+.+...|+ .-|....+ ..++ ....+. ..|...=....+.+.+.+++.++
T Consensus 244 ~cLgdILK~~GY~T~Fi~G~d~~F~n~~~f~~~hGFD~~y--g~~d~~~~~~~---~~~~n~WG~~Dd~Lfd~A~e~l~e 318 (762)
T PRK03776 244 ICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLY--GSEELKSVVAD---PHYRNDWGFYDDTVLDEAWKKFEE 318 (762)
T ss_pred ccHHHHHHhCCCceEEEeCCCcCcCchhhhHHhCCCcEEe--cchhccccccc---ccccCCcccCcHHHHHHHHHHHHH
Confidence 579999999999999886543 333222222 22221111 0000 000000 11111001344567777776554
Q ss_pred ---hCCCcEEEEeCCCCccC-CC------------CCCHHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCCc
Q 011613 339 ---SRRFHQVRVNLPNSDMV-GH------------TGDIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNA 398 (481)
Q Consensus 339 ---~~~~dfi~vnfa~~D~v-GH------------tg~~~a~~~aIe~vD~~lGrLl~al~~~g----t~vIITSDHGn~ 398 (481)
+++|.|+++-...+-+. |+ .+....+..+++.+|.+||++++++++++ |+||||||||..
T Consensus 319 Lsk~~kPFfl~llTlstH~P~g~~~~~c~~~~y~~~g~~~~~~~~v~~~D~~iG~fi~~Lk~~g~~dNTiIV~~sDHG~m 398 (762)
T PRK03776 319 LSRSGQRFSLFTLTVDTHHPDGFISRTCNRKSYDFDGKPNQSFSAVSCSQENIAALINKIKASPWFKNTVIVVSSDHLAM 398 (762)
T ss_pred hhcCCCCEEEEecCCCCcCCCccCchhhcccccccCCcchHHHHHHHHHHHHHHHHHHHHHhCCCccCeEEEEEccCCcc
Confidence 35788888755433221 11 12234567899999999999999999875 999999999963
Q ss_pred ccccccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCCCC----C-CCCCC
Q 011613 399 EDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEA----P-SDYEP 473 (481)
Q Consensus 399 e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi~~----P-~em~G 473 (481)
+ ..++ .. ...+....+|+|+.+|+. .+.... ...++.|++||||+++|++. | ..++|
T Consensus 399 --~---g~~~-------~~--l~~~kr~~i~lII~~p~~-~g~~~~---~~vs~IDI~PTILdlaGi~~~lglG~nllsG 460 (762)
T PRK03776 399 --N---NTAW-------KY--LNKQDRNNLFFVIRGDKP-QQETLA---VKRNTMDNGATVLDILGGDNYIGLGRSSLSG 460 (762)
T ss_pred --c---cccc-------hh--hccCCceeEEEEEECCCc-CCceEC---CceeehhHHHHHHHHhCCCccccCCcccCCC
Confidence 1 1111 00 011222467899998863 222222 24678999999999999987 4 44788
Q ss_pred -Cceec
Q 011613 474 -SLIEV 478 (481)
Q Consensus 474 -sLl~~ 478 (481)
||+++
T Consensus 461 ~SL~pl 466 (762)
T PRK03776 461 QSLSEI 466 (762)
T ss_pred CCHHHH
Confidence 88754
No 24
>PRK12363 phosphoglycerol transferase I; Provisional
Probab=99.27 E-value=1.3e-10 Score=129.22 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=110.6
Q ss_pred ccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCC----C-c-cccCCCccCCHHHHHHHHHHH
Q 011613 263 RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSD----S-G-ITFNVQPKMKALEIAERAKKA 336 (481)
Q Consensus 263 ~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp----~-v-~tyd~~pemsa~~vtd~ai~~ 336 (481)
.+|+++|+++||++.-+....+ -|||-+. .+...|-++..-.+. + . ..+...-.+..+.+.+.+++.
T Consensus 240 ~~La~ILkq~GY~Taf~hG~~~-----sF~nrd~--fyk~hGFD~f~d~~~f~~~~~~~~~~~~~WGl~Dd~lfd~A~~~ 312 (703)
T PRK12363 240 RCLGDYLKDQGYTNHYVGGADA-----SFAGKGK--FLSSHGFDEVHDVNYFLHDKGVAPKHFSAWGVHDDVLLDDAYDE 312 (703)
T ss_pred chHHHHHHhCCCcEEEEeCCCc-----CcCchhh--HHHhCCCCEEeechhhccccccCcccCCCCCcccHHHHHHHHHH
Confidence 5799999999999988763322 2222211 010011111100000 0 0 000001123455677888888
Q ss_pred HHh----CCCcEEEEeCCCCccC-CC------------CCCHHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCC
Q 011613 337 ILS----RRFHQVRVNLPNSDMV-GH------------TGDIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADH 395 (481)
Q Consensus 337 i~~----~~~dfi~vnfa~~D~v-GH------------tg~~~a~~~aIe~vD~~lGrLl~al~~~g----t~vIITSDH 395 (481)
|++ ++|.|+.+-...+-.. || ......+..+++.+|++||++++.++++| |+|||+|||
T Consensus 313 Le~Ls~~~qPFfl~llTvsnH~Py~~lp~~~~~~~~~~~~gd~~Yl~tI~ysD~aIG~FId~LKksglydNTIIV~~GDH 392 (703)
T PRK12363 313 FETLSRAGQPFMLTTLTMDTHHPAGHLPSACKGQRYDSPLGDIGMLHAIKCSDRLIGQLVDRIRNSRYGKNTIIVIASDH 392 (703)
T ss_pred HHhhhccCCCEEEEeeCCCCCCCcccCchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCcCCeEEEEEcCC
Confidence 765 5788877632211100 10 00125678899999999999999999965 899999999
Q ss_pred CCcccccccCCCCCCcccCCCccccccCCCceeeEEEEcCC-CCCCccccccCCCcccccHHHHHHHHhCCCCCCCCCC-
Q 011613 396 GNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPG-LPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP- 473 (481)
Q Consensus 396 Gn~e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~-~~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~em~G- 473 (481)
|..... . .. ......+||+++++|+ .+++ ...+ ..++..||+||||+++|++.+.-+-|
T Consensus 393 ~~~~~~----~-------~~-----~L~~~kRvP~~I~ip~gik~g-~i~~--~~gS~iDI~PTLL~LLGi~~~~~~fG~ 453 (703)
T PRK12363 393 LAMPND----L-------SD-----VLTKQKRENLLLFLGKDIAPQ-QVVT--RAGTTLDSGATLLQLLEPGMRTLGFGR 453 (703)
T ss_pred Cccccc----c-------cc-----cCCCCCeEEEEEEECCcCCCC-cEEC--CeeeeeHHHHHHHHHhCCCCCCCcCCC
Confidence 952110 0 00 0112247898888754 3333 2222 24788999999999999998866778
Q ss_pred Cce
Q 011613 474 SLI 476 (481)
Q Consensus 474 sLl 476 (481)
+|+
T Consensus 454 dLL 456 (703)
T PRK12363 454 SLL 456 (703)
T ss_pred cCC
Confidence 776
No 25
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=99.22 E-value=1.9e-10 Score=120.75 Aligned_cols=135 Identities=24% Similarity=0.272 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHHhC-CCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEecCCCCccccc
Q 011613 325 KALEIAERAKKAILSR-RFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIE-KVGGIYLVTADHGNAEDMV 402 (481)
Q Consensus 325 sa~~vtd~ai~~i~~~-~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~-~~gt~vIITSDHGn~e~m~ 402 (481)
+..+.++++++.|+++ +..|++++...+|+.||..+...+++.++++|++|+.+++.++ ..+|+||||||||+.....
T Consensus 232 sL~emt~~al~~L~~~~~gFfl~ve~~~iD~~gH~~d~~~~~~~l~~~D~av~~~l~~l~~~~dTLiIvTADHg~~~~~~ 311 (384)
T cd00016 232 SLAEMTEKAIDVLSKNPNGFFLMVEGGRIDHAHHANDAAGALSETLAFDDAVEAALDFAKKDGDTLVVVTADHSHGGTIL 311 (384)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEEeCCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCCcccc
Confidence 4567899999999764 5679999999999999999999999999999999999999997 4579999999999864332
Q ss_pred ccCCCCCCcc---------cCCCcc-------ccccCCCceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCC
Q 011613 403 KRNKSGEPLL---------KDGNIQ-------VLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGY 465 (481)
Q Consensus 403 ~~d~~g~~~~---------~~G~~~-------p~t~HT~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi 465 (481)
.....+.+.. .++.|. ....||.++||++.+||+.. .|.. ...+.||++.|+..|++
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~Htg~~Vpv~a~Gp~a~---~f~g---~~ent~I~~~i~~al~~ 384 (384)
T cd00016 312 GYAGRGNPILGLADAPELDVDGLPYTTLTYANTTGTHGGEDVPVFAYGPGSH---LFRG---VMENTEIAHVMAYALGL 384 (384)
T ss_pred CCCCCCCcccccccccccccCCCCceEEEecCCCCCCcCceeeEEeecCCcc---ccCc---ceecHHHHHHHHHHhcC
Confidence 1000110000 011100 14689999999999999741 2321 23468999999999875
No 26
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=99.01 E-value=6.8e-09 Score=113.10 Aligned_cols=136 Identities=12% Similarity=0.118 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHh--CCCcEEEEeCCCCcc----------CCC-C--------------CCHHHHHHHHHHHHHHHHHHHH
Q 011613 328 EIAERAKKAILS--RRFHQVRVNLPNSDM----------VGH-T--------------GDIEATVVACKAADEAVKIIID 380 (481)
Q Consensus 328 ~vtd~ai~~i~~--~~~dfi~vnfa~~D~----------vGH-t--------------g~~~a~~~aIe~vD~~lGrLl~ 380 (481)
.+...+.+.|++ .++.|+++|....-. ..+ + ....+|..+|..+|..|+++++
T Consensus 343 ~LL~~l~~~l~~~~~~p~fivlH~~GSH~P~Y~~RyP~~f~~F~p~~~~~~l~~~~~~~~~n~YdnsI~ytD~~l~~ii~ 422 (522)
T PRK09598 343 SLLYNLPELIKASSNENVLLILHLAGSHGPNYDNKYPLNFRVFKPVCSSVELSSCSKESLINAYDNTIFYNDYLLDKIIS 422 (522)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcCCCCCcccccCChhhcccCCCCcchhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777764 346798997643211 111 0 0124577799999999999999
Q ss_pred HHHhcC--cEEEEecCCCCcccccccCCCCCCcccCCCccccccCCCceeeEEEEcCCC-CCCc-cccccCCCcccccHH
Q 011613 381 AIEKVG--GIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGL-PDDV-KFRTDLPNGGLANVA 456 (481)
Q Consensus 381 al~~~g--t~vIITSDHGn~e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~-~~~~-~~~~~~~~g~L~DIa 456 (481)
.+++.+ +++|++||||. .+. ++|. ..+|.|.........+||||+++|+. +++. ....+ ...+..||+
T Consensus 423 ~Lk~~~~~t~iIy~SDHGe--~lg---e~g~--~~hg~p~~~~~~~~~~VP~ii~~s~~~~~~~~~~~~~-~~~S~ddif 494 (522)
T PRK09598 423 MLKNLKQPALMIYLSDHGE--SLG---EGAF--YLHGIPKSIAPKEQYEIPFIVWASDSFKKQHSIIQTQ-TPINQNVIF 494 (522)
T ss_pred HHHhCCCCeEEEEEccCcc--ccc---cCCc--ccCCCCcCCCccccccccEEEEEChhhhhhchhhhcC-CCchHHHHH
Confidence 999754 89999999995 332 2331 01232101112345689999998763 2110 01110 246789999
Q ss_pred HHHHHHhCCCCCCCC
Q 011613 457 ATFINLHGYEAPSDY 471 (481)
Q Consensus 457 PTIL~llGi~~P~em 471 (481)
||||+++|++.|.++
T Consensus 495 ~TlL~l~gv~t~~~~ 509 (522)
T PRK09598 495 HSVLGVFDFKNPSAV 509 (522)
T ss_pred HHHHHHcCCCCchhh
Confidence 999999999998654
No 27
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=99.01 E-value=9.4e-09 Score=112.45 Aligned_cols=141 Identities=12% Similarity=0.077 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhC-CCcEEEEeCCCCcc----------CCC-C-----C---------CHHHHHHHHHHHHHHHHHHHHH
Q 011613 328 EIAERAKKAILSR-RFHQVRVNLPNSDM----------VGH-T-----G---------DIEATVVACKAADEAVKIIIDA 381 (481)
Q Consensus 328 ~vtd~ai~~i~~~-~~dfi~vnfa~~D~----------vGH-t-----g---------~~~a~~~aIe~vD~~lGrLl~a 381 (481)
.+.+.+.+.|++. +..|+++|+...-. ..+ + . ...+|..+|..+|.+||++++.
T Consensus 358 ~LL~~l~~~L~~~~~~~fivLH~~GSH~P~Y~~RyP~~~~~F~p~~~~~~~~~~~~~~~~n~YdnsI~ytD~~lg~ii~~ 437 (545)
T PRK11598 358 VLFHGLENYINNLQGDGVIVLHTIGSHGPTYYNRYPPQFRKFTPTCDTNEIQTCTQQQLVNTYDNTILYVDYIVDKAINL 437 (545)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCCCCCCcchhhcCChhhccCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667543 34588898755321 000 0 0 0245788999999999999999
Q ss_pred HHhcC----cEEEEecCCCCcccccccCCCCCCcccCCCcccccc--CCCceeeEEEEcCC-CCCCcccc-----c-cC-
Q 011613 382 IEKVG----GIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTS--HTLKPVPIAIGGPG-LPDDVKFR-----T-DL- 447 (481)
Q Consensus 382 l~~~g----t~vIITSDHGn~e~m~~~d~~g~~~~~~G~~~p~t~--HT~~~VP~Ii~~p~-~~~~~~~~-----~-~~- 447 (481)
+++.+ |++|++||||.. +. ++|. ..+|.+ ... ....+||||+++++ .+++.... . ..
T Consensus 438 Lk~~~~~~nT~iIy~SDHGe~--lg---e~g~--~~hg~~--y~~aP~~~~~VPliiw~s~~~~~~~~~~~~~l~~~~~~ 508 (545)
T PRK11598 438 LKQHQDKFNTSLVYLSDHGES--LG---ENGI--YLHGLP--YAIAPDQQTHVPMLLWLSPDYQKRYGVDQQCLQKQAQT 508 (545)
T ss_pred HHhcCCcCCeEEEEECcCCCc--cc---cCCc--ccCCCc--cccCccccccccEEEEECcchhccccchhhhhhhhccC
Confidence 99864 799999999953 32 2331 023332 211 34579999997643 22111110 0 00
Q ss_pred CCcccccHHHHHHHHhCCCCCCCCCC-Ccee
Q 011613 448 PNGGLANVAATFINLHGYEAPSDYEP-SLIE 477 (481)
Q Consensus 448 ~~g~L~DIaPTIL~llGi~~P~em~G-sLl~ 477 (481)
...+..|++||+|+++|++.|..+.| +++.
T Consensus 509 ~~~s~ddl~~TlL~l~gI~t~~y~~~~di~~ 539 (545)
T PRK11598 509 QDYSQDNLFSTLLGLTGVQTKEYQAADDILQ 539 (545)
T ss_pred CceeHHhHHHHHHHHhCCCCCCCCCCCCccc
Confidence 13567899999999999999998888 7753
No 28
>PRK10649 hypothetical protein; Provisional
Probab=98.97 E-value=9.9e-09 Score=113.19 Aligned_cols=192 Identities=14% Similarity=0.177 Sum_probs=110.2
Q ss_pred cccHHHHHHhCCcceEEeeccccccc-eE---EecCCCccccCCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHH
Q 011613 262 DRTSGEYLVHNGVRTFACSETVKFGH-VT---FFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAI 337 (481)
Q Consensus 262 ~~tl~e~Ls~~G~~q~riaeteK~ah-vt---fF~nGg~e~~~~~~ge~r~lvpsp~v~tyd~~pemsa~~vtd~ai~~i 337 (481)
..+|.++++++|+++.-+....++.. .+ .+.....+..| .+..+. .+ ...|| +.+...+.++|
T Consensus 310 ~~~l~~llk~aGY~T~wisNq~~~~~~~~~~~~~~~~~d~~~f--~~~~~~--~~--~~~~D-------~~LL~~l~~~L 376 (577)
T PRK10649 310 QPSLMNMMKQAGYKTFWITNQQTMTARNTMLTVFSRQTDKQYY--MNQQRT--QN--AREYD-------TNVLKPFSEVL 376 (577)
T ss_pred CCCHHHHHHHCCCeEEEEeCCccccccchhhhHhhhhccchhh--cccccc--CC--CCCcH-------HHHHHHHHHHH
Confidence 35799999999999988776554211 00 00000000000 000000 00 01122 23444455666
Q ss_pred Hh-CCCcEEEEeCCCCcc---------C-------CCCC---------CHHHHHHHHHHHHHHHHHHHHHHHhc--CcEE
Q 011613 338 LS-RRFHQVRVNLPNSDM---------V-------GHTG---------DIEATVVACKAADEAVKIIIDAIEKV--GGIY 389 (481)
Q Consensus 338 ~~-~~~dfi~vnfa~~D~---------v-------GHtg---------~~~a~~~aIe~vD~~lGrLl~al~~~--gt~v 389 (481)
++ .++.|+++|+...-+ . .|.. ....|..+|..+|..||+|++.+++. +|++
T Consensus 377 ~~~~~~~fivlHl~GsH~~Y~~RyP~~~~~F~~~~~~~~~~~~~~~~~~~~~Y~nsI~y~D~~l~~ii~~Lk~~~~nt~i 456 (577)
T PRK10649 377 ADPAPKKFIIVHLLGTHIKYKYRYPENQGKFDDRTGHVPPGLNADELESYNDYDNANLYNDHVVASLIKDFKATDPNGFL 456 (577)
T ss_pred hccCCCcEEEEEecCCCcchhhhCCHHHhcCCCCCCcccccccchHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 43 346799998754321 0 1110 02467889999999999999999975 4999
Q ss_pred EEecCCCCcccccccCCCCCCcc-cC-CCccccccCCCceeeEEEEcCCC-C---CC--ccccccCCCcccccHHHHHHH
Q 011613 390 LVTADHGNAEDMVKRNKSGEPLL-KD-GNIQVLTSHTLKPVPIAIGGPGL-P---DD--VKFRTDLPNGGLANVAATFIN 461 (481)
Q Consensus 390 IITSDHGn~e~m~~~d~~g~~~~-~~-G~~~p~t~HT~~~VP~Ii~~p~~-~---~~--~~~~~~~~~g~L~DIaPTIL~ 461 (481)
|++||||... .+..+++ .+ .. +. ......+||||+++++. . +. ....+ ...+..|++||+|+
T Consensus 457 iy~SDHGe~~--~~~~~~~--~lG~~~~~----~~~~~~~VP~ii~~s~~~~~~~~~~~~~~~~--~~~s~~Dl~~Tll~ 526 (577)
T PRK10649 457 VYFSDHGEEV--YDTPPHK--TQGRNEDN----PTRHMYTIPFLLWTSEKWQAAHPRDFSQDVD--RKYSLAELIHTWSD 526 (577)
T ss_pred EEECCCCccc--ccCCccc--ccCCCCCC----CCcccceecEEEEECHHHHhhCchhhhhhhc--CCeeHHhHHHHHHH
Confidence 9999999641 1001111 01 11 22 23445799999998532 1 10 01111 24568999999999
Q ss_pred HhCCCCCCCCCC-Cce
Q 011613 462 LHGYEAPSDYEP-SLI 476 (481)
Q Consensus 462 llGi~~P~em~G-sLl 476 (481)
++|++.|..+.| ||+
T Consensus 527 laGi~~~~~~~~~sl~ 542 (577)
T PRK10649 527 LAGLSYDGYDPTRSLV 542 (577)
T ss_pred HcCCCCCcCCcccCcc
Confidence 999999998888 876
No 29
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=98.96 E-value=1.4e-08 Score=111.21 Aligned_cols=193 Identities=13% Similarity=0.177 Sum_probs=107.7
Q ss_pred cccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHHHhC-
Q 011613 262 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSR- 340 (481)
Q Consensus 262 ~~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd~~pemsa~~vtd~ai~~i~~~- 340 (481)
...+-++++++|+++.-+....+ .|++|.+.-..+ +.+ ....... ..... +..-+.+.+.+.+.|++.
T Consensus 318 ~~nlld~l~~aGy~t~w~SnQ~~----~w~~n~~~~~~~--~~~--~~~~~~~-~~~g~--~~~D~~LL~~l~~~L~~~~ 386 (558)
T PRK11560 318 EQNVFAVLKQLGFSSELFAMQSE----MWFYNNTMADNY--AYR--EQIGAEP-RNRGK--PVDDMLLVDEMKQSLGRNP 386 (558)
T ss_pred cCCHHHHHHHCCCcEEEeecccc----eeeecCcccccc--hhh--hhccccc-CCCCC--CcChHHHHHHHHHHHHhcC
Confidence 35688999999999877654332 344543221111 111 1111110 00000 111223556666777543
Q ss_pred -CCcEEEEeCCCCcc---------CCC----------C----CCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCC
Q 011613 341 -RFHQVRVNLPNSDM---------VGH----------T----GDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHG 396 (481)
Q Consensus 341 -~~dfi~vnfa~~D~---------vGH----------t----g~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHG 396 (481)
+..|+++|+..+-. ..+ + ....+|..+|..+|..||+|++.+++.+|+||+|||||
T Consensus 387 ~~~~~ivLH~~GSH~~Y~~RyP~~f~~F~p~~~~~~~~c~~~~~~n~YdnsI~ytD~~lg~ii~~Lk~~nTivIy~SDHG 466 (558)
T PRK11560 387 DGKHLIILHTKGSHYNYTQRYPRSFARYQPECIGVDSGCSKAQLINSYDNSVLYVDHFISSVIDQLRDKKAIVFYAADHG 466 (558)
T ss_pred CCCeEEEEeccCCCcChhhcCCHhhhccCCcCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEcCCC
Confidence 23578887644221 000 0 01245788999999999999999999899999999999
Q ss_pred CcccccccCCCCCCcccCCCccccccCCCceeeEEEEcCCC-C--CCc-----ccccc---CCCcccccHHHHHHHHhCC
Q 011613 397 NAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGL-P--DDV-----KFRTD---LPNGGLANVAATFINLHGY 465 (481)
Q Consensus 397 n~e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~-~--~~~-----~~~~~---~~~g~L~DIaPTIL~llGi 465 (481)
.. +. ++| . .+|.+.-.......+||||+++++. . ++. .+... -...+..|++||+|+++|+
T Consensus 467 e~--lg---e~~-~--lhg~~~~~~~~~~~~VPliv~~s~~~~~~p~~~~~~~~l~~~~~~~~~~s~~dlf~TlL~~~gv 538 (558)
T PRK11560 467 ES--IN---ERE-H--LHGTPREMAPPEQFRVPMMVWMSDKYLANPDNAQAFAQLKKQADMKVPRRHVELFDTILGCLGY 538 (558)
T ss_pred Cc--CC---CCc-c--cCCCCcccCCccCeeeCEEEEEccccccCCccchhHHHhccccccCCceeehhHHHHHHHHcCC
Confidence 63 31 222 1 1232100011256789999998532 1 110 01100 0124578999999999999
Q ss_pred CCCC-CCCC
Q 011613 466 EAPS-DYEP 473 (481)
Q Consensus 466 ~~P~-em~G 473 (481)
+.|. ..+.
T Consensus 539 ~~p~~~~~~ 547 (558)
T PRK11560 539 TSPDGGINE 547 (558)
T ss_pred CCChhhccc
Confidence 9884 3443
No 30
>KOG3867 consensus Sulfatase [General function prediction only]
Probab=98.79 E-value=1.2e-08 Score=110.08 Aligned_cols=112 Identities=20% Similarity=0.192 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCCcccccccCCCCCCcc-cCCCccccccCCCceeeEEEEcCC
Q 011613 362 EATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPG 436 (481)
Q Consensus 362 ~a~~~aIe~vD~~lGrLl~al~~~g----t~vIITSDHGn~e~m~~~d~~g~~~~-~~G~~~p~t~HT~~~VP~Ii~~p~ 436 (481)
..|..+|+.+|..||++++++++.| |+|+||||||.+-... ..++.... ..|..++ ++...+++|-+.++|+
T Consensus 269 ~~y~~~V~~mD~~VG~ildaL~~~gl~nnTiv~FtSDnG~~~~~~--~~~~~~n~~~~g~~~~-~weggir~~~~~~~p~ 345 (528)
T KOG3867|consen 269 GLYGDMVSEMDWSVGRILDALDDLGLANNTLVIFTSDNGGPLEGG--RGNGGSNGPWNGIKKP-GWEGGIRVPGLARWPG 345 (528)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEeCCCCccccCc--cccccccCCccceecC-CccccCCCcchhcCcc
Confidence 5677899999999999999999865 9999999999763321 11221101 2333222 3777899999999998
Q ss_pred CCCCccccccCCCcccccHHHHHHHHhCCCCCCC--CCC-Cceec
Q 011613 437 LPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD--YEP-SLIEV 478 (481)
Q Consensus 437 ~~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~e--m~G-sLl~~ 478 (481)
..+...... ...++.|+.||+++++|++.|.. .+| +|++.
T Consensus 346 ~~~~g~v~~--e~~s~~D~~PTl~~lag~~~p~d~~idG~~l~p~ 388 (528)
T KOG3867|consen 346 VVPAGQVSN--ELTSLLDILPTLADLAGGPLPQDRVIDGRDLLPL 388 (528)
T ss_pred ccccceecc--ccccccccchHHHHHcCCCCCcCceecccchHHH
Confidence 633222222 14678999999999999999965 789 88764
No 31
>COG3083 Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]
Probab=98.73 E-value=1.1e-07 Score=100.83 Aligned_cols=134 Identities=18% Similarity=0.213 Sum_probs=87.5
Q ss_pred HHHHHHHHHHH---HhCCCcEEEEeCCCC----ccCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHhcC----cEEE
Q 011613 327 LEIAERAKKAI---LSRRFHQVRVNLPNS----DMVGHTGD-----IEATVVACKAADEAVKIIIDAIEKVG----GIYL 390 (481)
Q Consensus 327 ~~vtd~ai~~i---~~~~~dfi~vnfa~~----D~vGHtg~-----~~a~~~aIe~vD~~lGrLl~al~~~g----t~vI 390 (481)
+..++.+.-.. ++++|.|-++.+... |-..-+.. ...|..++..+|.+||++++.+++.| |+||
T Consensus 376 ~~~t~~~~wf~~~~~~d~PwFs~L~l~~~~~~~~~~s~q~~~~~~~~~~Y~~a~~~vD~~I~~vLe~L~~~~~L~NTvVI 455 (600)
T COG3083 376 ERATQWLLWFGRYRDEDNPWFSYLSLNSSHANDDPSSNQAKARPPFKNRYQNALREVDSQIGRVLEQLRNSGLLDNTVVI 455 (600)
T ss_pred HHHHHHHHHHHHhhccCCCceEEEEccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEE
Confidence 34454444444 445688888877532 21222211 25678899999999999999997654 9999
Q ss_pred EecCCCCcccccccCCCCCCcccCCCccccccCC------CceeeEEEEcCCCCCCccccccCCCcccccHHHHHHH-Hh
Q 011613 391 VTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHT------LKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFIN-LH 463 (481)
Q Consensus 391 ITSDHGn~e~m~~~d~~g~~~~~~G~~~p~t~HT------~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~-ll 463 (481)
||||||-. -+ + .. .+ .-.|. ...||++|+||+.+++ +... ..+-.|++||++. +|
T Consensus 456 ITs~HG~e-Fn---e-~~------~~---ywG~~t~ysr~qlqVPlvihwpg~~~~-~v~~---lTsH~Dl~~tLMq~ll 517 (600)
T COG3083 456 ITADHGEE-FN---E-EE------QN---YWGHGTNYSRYQLQVPLVIHWPGTPAG-RVNH---LTSHLDLMTTLMQRLL 517 (600)
T ss_pred EECCCCcc-cC---c-cc------cc---cccCCCccccceecccEEEEeCCCcch-hhcC---ccchhhhHHHHHHHHh
Confidence 99999953 11 1 11 00 11233 2479999999997543 3321 2356899999999 99
Q ss_pred CCCCCCC--CCC-Cceec
Q 011613 464 GYEAPSD--YEP-SLIEV 478 (481)
Q Consensus 464 Gi~~P~e--m~G-sLl~~ 478 (481)
|+.-|.. -.| .|+..
T Consensus 518 ~V~np~~dYSqG~dLf~~ 535 (600)
T COG3083 518 GVSNPPSDYSQGQDLFNE 535 (600)
T ss_pred cCCCChhhhhcccchhcc
Confidence 9999865 456 66543
No 32
>KOG2126 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=98.72 E-value=4.4e-08 Score=109.19 Aligned_cols=180 Identities=16% Similarity=0.160 Sum_probs=117.3
Q ss_pred cccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHHHhCC
Q 011613 262 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRR 341 (481)
Q Consensus 262 ~~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd~~pemsa~~vtd~ai~~i~~~~ 341 (481)
++.+-.-+.++|.+..-.++..+-.+..=.|++.. +| ||-.+ .|+. .-..++.+.+-+.+++.+
T Consensus 143 EDNfv~Ql~~~gk~vvflGDdTW~~LFp~~f~~s~--s~----------pSfnv--~DLd--tVDn~v~~~if~~l~s~d 206 (895)
T KOG2126|consen 143 EDNFVRQLVLNGKSVVFLGDDTWTSLFPNQFNKSY--SF----------PSFNV--HDLD--TVDNGVIEKIFKSLNSKD 206 (895)
T ss_pred hhHHHHHHHHCCCeEEEecCccHHHhChHhhcCCC--CC----------CCCCC--cccc--ccchHHHHHhhhhhccCc
Confidence 34566667777998888887766544333333321 11 22111 1221 112468888888888888
Q ss_pred CcEEEEeCCCCccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCcccccccCCCCCCcccCCCccc
Q 011613 342 FHQVRVNLPNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQV 419 (481)
Q Consensus 342 ~dfi~vnfa~~D~vGHtg--~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~e~m~~~d~~g~~~~~~G~~~p 419 (481)
+|.++.||-+.|++||.. +-++..+-++++|++|+++++.+++ +|+++|.+|||+ |.+| .+|+
T Consensus 207 wdVlIAHfLGVDH~GHk~GPdH~~M~~KL~qmD~vI~~ii~~mde-dTlLvVmGDHGM-------t~nG----dHGG--- 271 (895)
T KOG2126|consen 207 WDVLIAHFLGVDHCGHKHGPDHPEMADKLVQMDRVINEIIKKMDE-DTLLVVMGDHGM-------TDNG----DHGG--- 271 (895)
T ss_pred hHHHHHHHhCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHhcc-CeeEEEecCCCC-------CCCC----CCCC---
Confidence 999999999999999974 4578888999999999999999986 799999999996 2233 2332
Q ss_pred cccCCCceeeEEEEcCCCC-CCccccccCCCcccccHHHHHHHHhCCCCCCCCCC
Q 011613 420 LTSHTLKPVPIAIGGPGLP-DDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP 473 (481)
Q Consensus 420 ~t~HT~~~VP~Ii~~p~~~-~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~em~G 473 (481)
.+....+-+ +.++.+... ......++.....++|+-||+.-+||+|+|=.-.|
T Consensus 272 dS~dEv~a~-lf~ySKk~~f~~lp~~~~~~~~~QIDLVptlalllGlPIPf~NlG 325 (895)
T KOG2126|consen 272 DSEDEVEAT-LFAYSKKHRFALLPPENKVESIEQIDLVPTLALLLGLPIPFSNLG 325 (895)
T ss_pred ccHHHhhhh-eeEEecCccccCCCCCCCccceeeehhHhHHHHHhCCCCCccccc
Confidence 123333344 444554321 00011000011357999999999999999966555
No 33
>KOG2125 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=98.69 E-value=2.5e-08 Score=108.72 Aligned_cols=120 Identities=22% Similarity=0.201 Sum_probs=86.5
Q ss_pred HhCCCcEEEEeCCCCccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCCcccccccCCCCCCc
Q 011613 338 LSRRFHQVRVNLPNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSGEPL 411 (481)
Q Consensus 338 ~~~~~dfi~vnfa~~D~vGHtg--~~~a~~~aIe~vD~~lGrLl~al~~~g----t~vIITSDHGn~e~m~~~d~~g~~~ 411 (481)
.+.++|..++||-..|++||.. .....-....++|+-+++|.+.+.+.. +++|+++|||+.|..
T Consensus 188 ~~~~Wd~lILHYLGlDHIGH~~G~~Sp~vp~KLkEmDeiv~~I~~~~~~~~s~d~tllil~gDHGM~e~G---------- 257 (760)
T KOG2125|consen 188 NSSDWDLLILHYLGLDHIGHVLGPSSPLVPAKLKEMDEIVKRIHDYLMEHRSGDQTLLILCGDHGMTESG---------- 257 (760)
T ss_pred hhcchhHHHHHHhccceeccccCCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEccccccccC----------
Confidence 4567999999999999999974 334444568999999999999888753 799999999987654
Q ss_pred ccCCCccccccCCCceeeEEEEcCCCC-CCccccccCCCcccccHHHHHHHHhCCCCCCCCCC
Q 011613 412 LKDGNIQVLTSHTLKPVPIAIGGPGLP-DDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEP 473 (481)
Q Consensus 412 ~~~G~~~p~t~HT~~~VP~Ii~~p~~~-~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~em~G 473 (481)
.+|.. .+.+| .+|+.+..++.. +..... ..+...++|++|||..++|+|+|.+-.|
T Consensus 258 -nHGGs--s~~ET--~s~l~~~~~N~~~~d~~~a-~~~rv~QiDl~pTI~~llgvpIP~~nvG 314 (760)
T KOG2125|consen 258 -NHGGS--SPGET--SSPLLFLLPNSNISDWLAA-GLERVEQIDLAPTIALLLGVPIPKGNVG 314 (760)
T ss_pred -CCCCC--Ccccc--cccEEEEecCCCCcccchh-ccchhhhhhhHHHHHHHhCCCccCCCcc
Confidence 12321 23444 577787777421 111110 0113457999999999999999999888
No 34
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.
Probab=98.41 E-value=2.4e-06 Score=90.75 Aligned_cols=66 Identities=23% Similarity=0.241 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCcc
Q 011613 328 EIAERAKKAILSRRFHQVRVNLPNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAE 399 (481)
Q Consensus 328 ~vtd~ai~~i~~~~~dfi~vnfa~~D~vGHtg--~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~e 399 (481)
.+++.+++++++.+|||+++ ..+|.+||.. ..++..++++.+|+.|++|++. |++|+||||||+.+
T Consensus 175 ~~~~~a~~~l~~~~pdllyl--~~~D~~gH~~Gp~S~e~~~~~~~lD~~l~~L~~~----~~~vvvtaDHG~~~ 242 (408)
T TIGR02335 175 FVLDAGLSLLTNERPDLMYL--STSDYVQHKHAPGEPESNAFYAAMDSRFKRYHEQ----GAIVAITADHGMNA 242 (408)
T ss_pred HHHHHHHHHHhccCCcEEEe--cCcCccccccCCCCHHHHHHHHHHHHHHHHHHHC----CCEEEEECCCCCcc
Confidence 35788889998889999765 6899999964 5678899999999999998873 79999999999753
No 35
>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD, deoxynucleotides and nucleotide sugars []. Another member of this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity []. The alignment encompasses the active site [, ]. Also present within this family is 60 kDa Ca2+-ATPase from Myroides odoratus []. This signature also hits a number of ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis.; GO: 0003824 catalytic activity; PDB: 2XRG_A 2XR9_A 3T02_A 3T01_A 3SZZ_A 3SZY_A 3T00_A 3NKM_A 3NKN_A 3NKR_A ....
Probab=98.39 E-value=4e-07 Score=92.77 Aligned_cols=71 Identities=27% Similarity=0.402 Sum_probs=57.0
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCccCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHhc----CcEEEEecCCCCccc
Q 011613 330 AERAKKAILSRRFHQVRVNLPNSDMVGHT-G-DIEATVVACKAADEAVKIIIDAIEKV----GGIYLVTADHGNAED 400 (481)
Q Consensus 330 td~ai~~i~~~~~dfi~vnfa~~D~vGHt-g-~~~a~~~aIe~vD~~lGrLl~al~~~----gt~vIITSDHGn~e~ 400 (481)
.+.+...+++.+|||++++|..+|.+||. | +.+++.++++.+|++||+|++++++. ++.||||||||....
T Consensus 172 ~~~~~~l~~~~~pdl~~~~~~~~D~~~H~~g~~s~~~~~~~~~~D~~ig~l~~~l~~~~~~~~~~iiv~SDHG~~~~ 248 (365)
T PF01663_consen 172 TDAAEYLIQKERPDLIFVYFPEPDHIGHRYGPDSPEIEDAYRRIDQAIGRLLEALDENGLLEDTNIIVTSDHGMTPV 248 (365)
T ss_dssp HHHHHHHHHTTTESEEEEEEECCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTT-TTTEEEEEEES---EEE
T ss_pred HHHHHHHHhhCCCCEEEEEecCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEEccCccccc
Confidence 34555557778899999999999999993 3 45678899999999999999999986 389999999998654
No 36
>PRK10518 alkaline phosphatase; Provisional
Probab=98.34 E-value=5.3e-06 Score=89.25 Aligned_cols=135 Identities=20% Similarity=0.243 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHh-CCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEecCCCCccccc
Q 011613 325 KALEIAERAKKAILS-RRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEK-VGGIYLVTADHGNAEDMV 402 (481)
Q Consensus 325 sa~~vtd~ai~~i~~-~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~-~gt~vIITSDHGn~e~m~ 402 (481)
+-.+.++++++.|++ .+-+|++|.=...|+.+|..+....+..+..+|+.|+..++..++ .+|+||+||||++.....
T Consensus 325 sLaeMT~kAI~~Lskn~~GFFLmVEGg~ID~a~H~nda~~~i~E~~~fD~AV~~A~~~~~~~~dTLVIVTADH~h~~~i~ 404 (476)
T PRK10518 325 TLAQMTDKAIDLLKKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQKALEFARKDGNTLVIVTADHAHSSQII 404 (476)
T ss_pred CHHHHHHHHHHHhccCCCceEEEeeccccchhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCCcceec
Confidence 457889999999964 346799999899999999999999999999999999999999998 469999999999765443
Q ss_pred ccCCCCCC-----cc-cCCCc---------cccccCCCceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCCC
Q 011613 403 KRNKSGEP-----LL-KDGNI---------QVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYE 466 (481)
Q Consensus 403 ~~d~~g~~-----~~-~~G~~---------~p~t~HT~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi~ 466 (481)
. ...+.| +. .+|.+ .....||...||+..+||+.. .|.- .....+|+-+|...|++.
T Consensus 405 g-~~~~~~g~~~~~~~~dg~~~~l~y~~g~g~s~~HtG~dV~v~A~GP~A~---~f~G---~~eqt~if~~m~~Al~~~ 476 (476)
T PRK10518 405 A-PDAKAPGLTQALNTKDGAVMVVSYGNSEEDSQEHTGTQLRIAAYGPHAA---NVVG---LTDQTDLFYTMKDALGLK 476 (476)
T ss_pred C-CCCCCCCcccccccCCCCeeEEEeccCCCCCcCcCCceeEEEecCCccc---cccc---ceeccHHHHHHHHHhCCC
Confidence 1 001100 00 12221 003479999999999999742 2221 123589999999998873
No 37
>COG1368 MdoB Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]
Probab=98.24 E-value=7.1e-06 Score=92.01 Aligned_cols=187 Identities=19% Similarity=0.175 Sum_probs=110.5
Q ss_pred cccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEeccCCCccccCC------CccCCHHHHHHHHHH
Q 011613 262 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV------QPKMKALEIAERAKK 335 (481)
Q Consensus 262 ~~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd~------~pemsa~~vtd~ai~ 335 (481)
-++++.+|+++||+|..+....+ .|||....-+. -|-+...-+ ..|+. .-..+-+...+++++
T Consensus 342 ~~slp~iLk~~GY~t~a~hg~~~-----~fwNr~~~yk~--~Gfd~f~~~----~~~~~~~~~~~~~G~sD~~l~~~~~~ 410 (650)
T COG1368 342 YSSLPAILKQQGYKTAALHGGDG-----SFWNRKSFYKI--FGFDDFFDL----ESFDGNADSEIGWGLSDKDLFKESLP 410 (650)
T ss_pred cccHHHHHhcCCceEEEEeCCCc-----ceecHHHHHHh--cChhhccch----hhcCCCcccccCCCCchHHHHHHHHH
Confidence 57899999999999999955444 67777643222 221111111 11111 112355667788888
Q ss_pred HHHhCC-CcEEE-EeCC------CCccCC-------CCC--CHHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecC
Q 011613 336 AILSRR-FHQVR-VNLP------NSDMVG-------HTG--DIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTAD 394 (481)
Q Consensus 336 ~i~~~~-~dfi~-vnfa------~~D~vG-------Htg--~~~a~~~aIe~vD~~lGrLl~al~~~g----t~vIITSD 394 (481)
.+++.+ |.|.+ +-.. .++..- +.+ ....+.+++...|++++++++.+++.| +++++++|
T Consensus 411 ~l~~~~~Pfy~~~iTlsnH~Pf~~~~~~~~~~~~~~~~~~~~l~~y~~~~~y~D~al~~F~~~lkk~~~~~~sviv~~GD 490 (650)
T COG1368 411 LLKKLKKPFFSFVITLSNHGPFELPEGKRNELLEEPLSASTALANYLQAVHYADEALGQFIDKLKKSGLYKNSVIVLYGD 490 (650)
T ss_pred HHHhcCCChHheEEeccCCCCCCCChhhhcccccccCcCcccccchhhhhhhHHHHHHHHHHHHHhcCCCCCcEEEEECC
Confidence 887654 33222 1111 111111 111 234567889999999999999999885 89999999
Q ss_pred CCCcccccccCCCCCCcccCCCccccccCCCceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCCCCCC
Q 011613 395 HGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPS 469 (481)
Q Consensus 395 HGn~e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P~ 469 (481)
|....... ... .....|. . ...--..+||+++..|+........ ..++..||+||+++++|++ +.
T Consensus 491 H~~~~~~~--~~~--~~~~~~~-~-~~~~~~~~vP~~i~~~g~~~~~~~~---~~~~qidi~pTil~l~gi~-~~ 555 (650)
T COG1368 491 HYGISGNQ--NLA--MPKFLGK-S-YDIDMLQRVPLLIHAPGIKNKKKID---TVGGQLDIAPTILGLLGIS-TK 555 (650)
T ss_pred CCCcchhh--hhh--hhhhccc-c-cchhHHhcCCeEEEcCCCCcccccc---ccccccchhhHHHHHcCCC-Cc
Confidence 99653221 000 0000110 0 0000124699999999864321211 2477899999999999998 54
No 38
>TIGR03397 acid_phos_Burk acid phosphatase, Burkholderia-type. A member of this family, AcpA from Burkholderia mallei, has been charactized as a surface-bound glycoprotein with acid phosphatase activity, as can be shown with the colorigenic substrate 5-bromo-4-chloro-3-indolyl phosphate. This family shares regions of sequence similarity with phosphocholine-preferring phospholipase C enzymes (TIGR03396) from many of the same species.
Probab=98.11 E-value=3.2e-05 Score=83.33 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=76.1
Q ss_pred HHHHHHhCC-CcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecC-CCCcccccccCC
Q 011613 333 AKKAILSRR-FHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTAD-HGNAEDMVKRNK 406 (481)
Q Consensus 333 ai~~i~~~~-~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~g----t~vIITSD-HGn~e~m~~~d~ 406 (481)
..+-++.++ |.+.++.- +.-.-+|.+.. .|+..|..|++|+++|++.+ |+||||+| ||.. . |
T Consensus 335 F~~Dv~~g~LPqvSfI~P-~~~~d~Hp~~s-----~v~~gD~~vg~vl~aL~~~p~w~NTlII~T~DENGG~---~--D- 402 (483)
T TIGR03397 335 FIAAIDAGKLPQVSFYKP-QGNLNEHAGYA-----DVAAGDRHIADVIAHLQKSPQWKNMVVIVTYDENGGF---W--D- 402 (483)
T ss_pred HHHHHHcCCCCcEEEEeC-CCCCCCCcCCC-----CHHHHHHHHHHHHHHHHhCccccCcEEEEEEECCCCc---C--c-
Confidence 444455554 55555542 22223565421 28999999999999999864 99999999 8852 1 1
Q ss_pred CCCCcccCCCccccccCCCceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCCCCC
Q 011613 407 SGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAP 468 (481)
Q Consensus 407 ~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P 468 (481)
+..+ +++. ......+||+||++|..++|....+ .....||.|||.+++|++..
T Consensus 403 hv~p--Pk~~----~~ggG~RVP~IVisP~~k~G~v~~~---~~dh~SiL~Tie~~~GL~~L 455 (483)
T TIGR03397 403 HVAP--PKGD----RWGPGTRIPAIVVSPFAKKGYVDHT---PYDTTSILRFITRRFGLPPL 455 (483)
T ss_pred CCCC--CCcC----CCCCccEEEEEEEECCCCCCcEeCc---eeeeehHHHHHHHHhCCCCc
Confidence 1101 2232 3456789999999998754433221 34579999999999999983
No 39
>KOG2645 consensus Type I phosphodiesterase/nucleotide pyrophosphatase [General function prediction only]
Probab=98.11 E-value=9.4e-06 Score=86.04 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=59.2
Q ss_pred HHHHHHHHH--HHHhCCCcEEEEeCCCCccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCCc
Q 011613 327 LEIAERAKK--AILSRRFHQVRVNLPNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNA 398 (481)
Q Consensus 327 ~~vtd~ai~--~i~~~~~dfi~vnfa~~D~vGHtg--~~~a~~~aIe~vD~~lGrLl~al~~~g----t~vIITSDHGn~ 398 (481)
++..+.+++ +-++++++|+.++++++|.+||.. +.+...+++..||..++.|++.+++.+ ..|||+||||+.
T Consensus 158 ~~~~~~i~~~~~~~~e~p~l~~~Y~~~pD~~gh~~Gp~~~~v~~~l~~vD~~i~~L~~~Lk~r~L~~~vNvIi~SDHGM~ 237 (418)
T KOG2645|consen 158 EERADTVLDLDLPEKERPDLLLLYVEEPDHSGHRYGPDSPEVEKALKEVDDFIGYLIKGLKDRNLFEDVNVIIVSDHGMT 237 (418)
T ss_pred HHHHHHHhccccccccCCCceEEeccCCCccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHccccccceEEEeecCCcc
Confidence 344444444 224567999999999999999964 345688999999999999999999876 689999999986
Q ss_pred cc
Q 011613 399 ED 400 (481)
Q Consensus 399 e~ 400 (481)
..
T Consensus 238 ~~ 239 (418)
T KOG2645|consen 238 DI 239 (418)
T ss_pred cc
Confidence 54
No 40
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=97.79 E-value=0.00039 Score=74.61 Aligned_cols=72 Identities=31% Similarity=0.334 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHHhCC-CcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-cEEEEecCCC
Q 011613 325 KALEIAERAKKAILSRR-FHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVG-GIYLVTADHG 396 (481)
Q Consensus 325 sa~~vtd~ai~~i~~~~-~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~g-t~vIITSDHG 396 (481)
+-.+.++++++.|++++ -+|++|.=...|+.+|..++...+.-++.+|+.+...++..++.+ |+||+||||-
T Consensus 281 sLaeMt~kAi~~L~kn~~GFFLMVEGg~ID~a~Hand~~~~i~e~~~fd~Avq~al~fA~k~~~TLVIvTADH~ 354 (482)
T COG1785 281 SLAEMTEKAIDLLSKNKKGFFLMVEGGRIDWAGHANDPAGAIGETVAFDEAVQAALDFAEKDGNTLVIVTADHE 354 (482)
T ss_pred cHHHHHHHHHHHhccCCCceEEEEeccccchhhcCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 44678999999997654 578899988999999999999999999999999999999999875 7999999994
No 41
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=97.58 E-value=0.00026 Score=75.46 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHh-CCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEecCCCCc
Q 011613 325 KALEIAERAKKAILS-RRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEK-VGGIYLVTADHGNA 398 (481)
Q Consensus 325 sa~~vtd~ai~~i~~-~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~-~gt~vIITSDHGn~ 398 (481)
+-.+.++++++.|++ .+-+|++|.=...|+.+|..+....+..+..+|+.|+..++.+++ .+|+||+||||++.
T Consensus 235 sL~eMt~~Al~~L~~~~~GFfLmVEgg~ID~a~H~nd~~~~i~E~~~fd~AV~~a~~~~~~~~dTLiiVTADH~~g 310 (419)
T smart00098 235 SLAEMTEVAIRLLSKNERGFFLMVEGGRIDHAHHENDACGALHETVDFDQAIQAALEFAKKEDETLVIVTADHSHV 310 (419)
T ss_pred CHHHHHHHHHHHhhcCCCceEEEEecccCChhhccCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEecCCCc
Confidence 456889999999964 456899999999999999999999999999999999999999984 46999999999765
No 42
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3.1.3.1 from EC) (ALP), which act as non-specific phosphomonoesterases to hydrolyse phosphate esters, optimally at high pH. The reaction mechanism involves the attack of a serine alkoxide on a phosphorus of the substrate to form a transient covalent enzyme-phosphate complex, followed by the hydrolysis of the serine phosphate. Alkaline phosphatases are found in all kingdoms of life, with the exception of some plants. Alkaline phosphatases are metalloenzymes that exist as a dimer, each monomer binding metal ions. The metal ions they carry can differ, although zinc and magnesium are the most common. For example, Escherichia coli alkaline phosphatase (encoded by phoA) requires the presence of two zinc ions bound at the M1 and M2 metal sites, and one magnesium ion bound at the M3 site []. However, alkaline phosphatases from Thermotoga maritima and Bacillus subtilis require cobalt for maximal activity []. In mammals, there are four alkaline phosphatase isozymes: placental, placental-like (germ cell), intestinal and tissue-nonspecific (liver/bone/kidney). All four isozymes are anchored to the outer surface of the plasma membrane by a covalently attached glycosylphosphatidylinositol (GPI) anchor []. Human alkaline phosphatases have four metal binding sites: two for zinc, one for magnesium, and one for calcium ion. Placental alkaline phosphatase (ALPP or PLAP) is highly polymorphic, with at least three common alleles []. Its activity is down-regulated by a number of effectors such as l-phenylalanine, 5'-AMP, and by p-nitrophenyl-phosphonate (PNPPate) []. The placental-like isozyme (ALPPL or PLAP-like) is elevated in germ cell tumours. The intestinal isozyme (ALPI or IAP) has the ability to detoxify lipopolysaccharide and prevent bacterial invasion across the gut mucosal barrier []. The tissue-nonspecific isozyme (ALPL) is, and may play a role in skeletal mineralisation. Defects in ALPL are a cause of hypophosphatasia, including infantile-type (OMIM:241500), childhood-type (OMIM:241510) and adult-type (OMIM:146300). Hhypophosphatasia is an inherited metabolic bone disease characterised by defective skeletal mineralisation []. This entry also contains the related enzyme streptomycin-6-phosphate phosphatase (3.1.3.39 from EC) (encoded by strK) from Streptomyces species. This enzyme is involved in the synthesis of the antibiotic streptomycin, specifically cleaving both streptomycin-6-phosphate and, more slowly, streptomycin-3-phosphate [].; GO: 0016791 phosphatase activity, 0008152 metabolic process; PDB: 1AJD_B 1ALH_B 2ANH_B 3BDF_A 1ELZ_B 1ELX_B 1B8J_B 2GA3_A 1ANJ_B 1Y6V_B ....
Probab=97.22 E-value=0.00033 Score=74.85 Aligned_cols=74 Identities=27% Similarity=0.329 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHhC-CCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-CcEEEEecCCCCc
Q 011613 325 KALEIAERAKKAILSR-RFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKV-GGIYLVTADHGNA 398 (481)
Q Consensus 325 sa~~vtd~ai~~i~~~-~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~-gt~vIITSDHGn~ 398 (481)
+-.+.++++++.|.++ +-+|++|.=...|..+|..+....+..+..+|+.|+..++.+++. +|+||+||||++.
T Consensus 238 sL~eMt~~Al~~L~~~~~GFfLmVEg~~ID~a~H~nd~~~~i~E~~~fD~AV~~a~~~~~~~~~TLiIVTADHetg 313 (421)
T PF00245_consen 238 SLAEMTEKALEVLSKNPKGFFLMVEGGRIDWAGHANDAARAIEETLEFDDAVKVALDFAEKDDDTLIIVTADHETG 313 (421)
T ss_dssp HHHHHHHHHHHHHTTSTT-EEEEEEETHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEESSEES
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEecccchhhhhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEecccCc
Confidence 4467899999999644 467999998899999999999999999999999999999999654 5999999999865
No 43
>COG1524 Uncharacterized proteins of the AP superfamily [General function prediction only]
Probab=97.05 E-value=0.00043 Score=74.22 Aligned_cols=60 Identities=27% Similarity=0.406 Sum_probs=54.7
Q ss_pred hCCCcEEEEeCCCCccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCCc
Q 011613 339 SRRFHQVRVNLPNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNA 398 (481)
Q Consensus 339 ~~~~dfi~vnfa~~D~vGHtg--~~~a~~~aIe~vD~~lGrLl~al~~~g----t~vIITSDHGn~ 398 (481)
+.+||++++++.+.|.+||.. ..+++..+++.+|..++++++.+++.| +.++|+||||..
T Consensus 215 ~~~p~~~l~~~~~iD~~~H~~G~~s~~~~~~~~~~d~~l~~ll~~l~~~~~~~~~~~ii~sDHG~~ 280 (450)
T COG1524 215 RADPDLLLVYLPNIDAIGHKYGPDSPEYAEAVREVDSLLGELLELLKKRGLYEEYLVIITSDHGMS 280 (450)
T ss_pred ccCcchhhhhccccchhhhccCCCCHHHHhhhhhhhhhHHHHHHHHHhhccccceEEEEecccccc
Confidence 457999999999999999963 567889999999999999999999987 999999999986
No 44
>PF08665 PglZ: PglZ domain; InterPro: IPR013973 This entry is a member of the Alkaline phosphatase clan.
Probab=96.93 E-value=0.002 Score=60.88 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=40.9
Q ss_pred CCCcEEEEeCCCCccCCCCC--C---HHHHHHHHH--HHHHHHHHHHHHHHhcCcEEEEecCCCCc
Q 011613 340 RRFHQVRVNLPNSDMVGHTG--D---IEATVVACK--AADEAVKIIIDAIEKVGGIYLVTADHGNA 398 (481)
Q Consensus 340 ~~~dfi~vnfa~~D~vGHtg--~---~~a~~~aIe--~vD~~lGrLl~al~~~gt~vIITSDHGn~ 398 (481)
.+.+++.|.+...|..||.. . .++..++++ .....|.+++..+.+.|+.|+||||||+.
T Consensus 110 ~~~~vv~vv~n~ID~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~li~~l~~~~~~V~ITsDHG~v 175 (181)
T PF08665_consen 110 KGTRVVYVVHNFIDDLGHKRKSEQLGFEAMYRAIELWWFEHELRSLIKELRNAGRRVVITSDHGFV 175 (181)
T ss_pred CCCCEEEEEEcchhhhhCcccccchhHHHHHHHHhhhhhhHHHHHHHHHHHhcCceEEEECCCCCE
Confidence 45689999999999999932 1 233333443 11125667777777778999999999984
No 45
>KOG2124 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=96.89 E-value=0.0021 Score=72.59 Aligned_cols=116 Identities=22% Similarity=0.306 Sum_probs=82.2
Q ss_pred cEEEEeCCCCccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhc----CcEEEEecCCCCcccccccCCCCCCcccCCC
Q 011613 343 HQVRVNLPNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEKV----GGIYLVTADHGNAEDMVKRNKSGEPLLKDGN 416 (481)
Q Consensus 343 dfi~vnfa~~D~vGHtg--~~~a~~~aIe~vD~~lGrLl~al~~~----gt~vIITSDHGn~e~m~~~d~~g~~~~~~G~ 416 (481)
-..++|....|-.||.. +...++..++.+|+.|.++.+..++. .|.-++|||||+.+- ..|| .|.
T Consensus 199 vVfflhLlg~dt~gH~~~P~s~~y~~nl~~~d~~i~~~y~l~e~~fnD~kTayi~TaDhgms~~----gsHg-----~G~ 269 (883)
T KOG2124|consen 199 IVFFLHLLGIDTAGHAHRPYSVEYRENLKYTDKGIRELYDLFENYFNDGKTAYIFTADHGMSDF----GSHG-----DGH 269 (883)
T ss_pred eEEEEeecCcCccccccCCCcHHHHHHhhcCCccHHHHHHHHHHHhcCCcceEEEehhcccccc----cccC-----CCC
Confidence 45678999999999954 56789999999999999998888752 389999999997533 2333 332
Q ss_pred ccccccCCCceeeEEEEcCCCCC-----Cccccc-c---C--CCcccccHHHHHHHHhCCCCCCCCCC
Q 011613 417 IQVLTSHTLKPVPIAIGGPGLPD-----DVKFRT-D---L--PNGGLANVAATFINLHGYEAPSDYEP 473 (481)
Q Consensus 417 ~~p~t~HT~~~VP~Ii~~p~~~~-----~~~~~~-~---~--~~g~L~DIaPTIL~llGi~~P~em~G 473 (481)
-+..+.|++..|.|++. +..+.+ . . .+-.++||||-+-.+.|++.|..--|
T Consensus 270 ------~~~~~TPlv~WGaGik~~~~n~~~~~~~~~~~~~~~~dl~Qa~IApLMS~LiGlp~P~Nsvg 331 (883)
T KOG2124|consen 270 ------PENTRTPLVAWGAGIKYPVPNSEQNFDEYSLTEIKRHDLNQADIAPLMSYLIGLPPPVNSVG 331 (883)
T ss_pred ------cccccChHHHhcCCCCccCCCCCcCCccccccccchhhhhHHHHHHHHHHHhCCCCcccchh
Confidence 23347899999987631 111111 0 0 11235899999999999999976333
No 46
>KOG4126 consensus Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=96.66 E-value=0.011 Score=63.79 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHhCC-CcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCcccc
Q 011613 325 KALEIAERAKKAILSRR-FHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 401 (481)
Q Consensus 325 sa~~vtd~ai~~i~~~~-~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~e~m 401 (481)
|-.+.++++++.|.+++ =.|++|.=.-.||..|......++....+.|+.+..-.+...+.+|++|+||||...-.+
T Consensus 326 sL~eMte~Al~vL~~~~~GffLfVEGgrID~ghH~~~a~~aL~Et~ef~~Aiq~a~~~t~~~dTLivvTaDHsh~~s~ 403 (529)
T KOG4126|consen 326 SLSEMTEKALEVLSKNSKGFFLFVEGGRIDHGHHETDARQALDETLEFDKAIQRALELTSEEDTLIVVTADHSHTFSI 403 (529)
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEecccccccccccHHHHHHHHHHHHHHHHHHHHHhcCccCCEEEEecccccceee
Confidence 45688999999997654 358888877899999988877777888889999999999988889999999999875433
No 47
>TIGR02687 conserved hypothetical protein TIGR02687. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 880 amino acids in length. This protein is repeatedly found upstream of another uncharacterized protein of about 470 amino acids in length, modeled by TIGR02688.
Probab=96.19 E-value=0.0077 Score=69.64 Aligned_cols=57 Identities=26% Similarity=0.320 Sum_probs=46.8
Q ss_pred CCCcEEEEeCCCCccCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCc
Q 011613 340 RRFHQVRVNLPNSDMVGHTGD-----IEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNA 398 (481)
Q Consensus 340 ~~~dfi~vnfa~~D~vGHtg~-----~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn~ 398 (481)
....++++++...|..||... +++..++++.++..+++|++.+. ++.|+||||||..
T Consensus 568 ~~~~~vyiY~~~ID~~g~~~~~e~~~f~a~~~~l~el~~~v~~l~~~l~--~~~i~iTADHGfi 629 (844)
T TIGR02687 568 RDKRVIYIYHNKIDATGDKQSSEENVFEAVEETIVELKKLVKYLINRLN--GTNIIVTADHGFL 629 (844)
T ss_pred cCCcEEEEecCccchhhcccCCcchHHHHHHHHHHHHHHHHHHHHHhcC--CcEEEEECCCccc
Confidence 347899999999999999642 34667888999999999888764 4699999999975
No 48
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=95.07 E-value=0.28 Score=54.50 Aligned_cols=100 Identities=12% Similarity=0.137 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEecCCCCcccccccCCCCCCcccCCCccccccCCCceeeEEEEcCCC--
Q 011613 362 EATVVACKAADEAVKIIIDAIEKV--GGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGL-- 437 (481)
Q Consensus 362 ~a~~~aIe~vD~~lGrLl~al~~~--gt~vIITSDHGn~e~m~~~d~~g~~~~~~G~~~p~t~HT~~~VP~Ii~~p~~-- 437 (481)
..|.-.|-..|..|.++++.|+++ ++.+|..||||-. .. ++|. ..+|.|.-.-.....+||||++....
T Consensus 419 N~YDNtilYtD~~L~~vi~~Lk~~~~~~~liY~SDHGEs--lg---En~~--ylhg~p~~~ap~~q~~VP~i~w~S~~~~ 491 (555)
T COG2194 419 NCYDNTILYTDYFLSKLIDQLKDKKDNTSLIYFSDHGES--LG---ENGP--YLHGTPYEIAPQEQYHVPFIVWSSDKFQ 491 (555)
T ss_pred HhhhchhhhhHHHHHHHHHHHHhCCCCeEEEEEcCccHh--hc---cCCc--ccccCcccCCchhheeeeEEEEEChHHH
Confidence 345568999999999999999998 5799999999953 32 2220 01333200001123479999987642
Q ss_pred -CCCccccccC-----C--CcccccHHHHHHHHhCCCCC
Q 011613 438 -PDDVKFRTDL-----P--NGGLANVAATFINLHGYEAP 468 (481)
Q Consensus 438 -~~~~~~~~~~-----~--~g~L~DIaPTIL~llGi~~P 468 (481)
..+......| . ..+..++.-|+|.+++...+
T Consensus 492 ~~~~~~~~~~c~~~~~~~~~~~~d~lf~s~lg~~~~~~~ 530 (555)
T COG2194 492 QKHPRQKDLRCLNYFAQELSYSHDNLFHSLLGVSGVKTG 530 (555)
T ss_pred hhhhhhhHHHHHHHhhhccchhHHHhHhhccCccccccc
Confidence 1110000011 0 12357999999999988876
No 49
>PF02995 DUF229: Protein of unknown function (DUF229); InterPro: IPR004245 Members of this family are uncharacterised with a long conserved region that may contain several domains.
Probab=92.33 E-value=0.72 Score=50.55 Aligned_cols=182 Identities=11% Similarity=0.102 Sum_probs=94.2
Q ss_pred ccHHHHHHhCCcceEEeeccccccceEEecCCCccccCCCCCcceEec-cCCCcccc-------CCCccCCHHHHHHHHH
Q 011613 263 RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEI-PSDSGITF-------NVQPKMKALEIAERAK 334 (481)
Q Consensus 263 ~tl~e~Ls~~G~~q~riaeteK~ahvtfF~nGg~e~~~~~~ge~r~lv-psp~v~ty-------d~~pemsa~~vtd~ai 334 (481)
.-+.+..+++||.++...+..+..-.++...|=...|- ...-|... ...+...+ =.......+-+.|-+.
T Consensus 206 ~~iw~~fk~~GY~T~~~ED~~~~~~f~y~~~GF~~~pt--Dhy~rpf~~~~e~~~~~~~~~~~~C~g~~~~~~~~~dy~~ 283 (497)
T PF02995_consen 206 PFIWKDFKKAGYVTAYAEDWPSIGTFNYRKKGFKKQPT--DHYLRPFMLAAEKHLNKFRRFGLKCLGGRESHEYLLDYIE 283 (497)
T ss_pred cHHHHHHhhcCceEEEecCcccccccccCCCCCCCCCC--CcccchHHHHHHHhccceeccCCCccCchHHHHHHHHHHH
Confidence 56889999999999977666554433433333333333 11111110 00000001 0111222333444444
Q ss_pred HHHHh--CCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCCcccccccCCCC
Q 011613 335 KAILS--RRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSG 408 (481)
Q Consensus 335 ~~i~~--~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~g----t~vIITSDHGn~e~m~~~d~~g 408 (481)
++++. +.+-|.+..+... .|. . ...+..+|..+-+.++.+.+.| ++|||.||||.- + |
T Consensus 284 ~f~~~y~~~~~F~~~w~~~~---~h~-~----~~~~~~~D~~~~~~l~~~~~~g~l~nT~vi~~SDHG~R--~------g 347 (497)
T PF02995_consen 284 QFMEAYKDRPKFGFFWFNSL---SHD-D----FNGPSSLDDDLLDFLEKLQEEGVLDNTFVIFMSDHGLR--F------G 347 (497)
T ss_pred HHHHHhhccceeeEEEeccc---ccc-c----cchhHHHHHHHHHHHHHhhhcCcccccEEEEEcCCCcc--c------C
Confidence 44432 3455666654322 332 1 2237889999999999998874 899999999963 1 1
Q ss_pred CCcc--cCCCccccccCCCceeeEEEEc-C-CCCCC-cc----cccc-CCCcccccHHHHHHHHhCCCCCCC
Q 011613 409 EPLL--KDGNIQVLTSHTLKPVPIAIGG-P-GLPDD-VK----FRTD-LPNGGLANVAATFINLHGYEAPSD 470 (481)
Q Consensus 409 ~~~~--~~G~~~p~t~HT~~~VP~Ii~~-p-~~~~~-~~----~~~~-~~~g~L~DIaPTIL~llGi~~P~e 470 (481)
+++ ..|. .+ .+-||+... | .++.. .. +... -+-.+-.|+-.||++++.++.+..
T Consensus 348 -~~r~t~~G~-----~E--erlP~l~i~lP~~fr~~~p~~~~nL~~N~~rL~T~~Dlh~TL~~il~~~~~~~ 411 (497)
T PF02995_consen 348 -SFRETSQGK-----LE--ERLPFLFISLPPWFREKYPEAVENLKENQNRLTTPFDLHATLKDILNLQELSD 411 (497)
T ss_pred -ccccccccc-----hh--hcCccceeEcCHHHHhHHHHHHHHHHHHHhccCChhHHHHHHHHHhccccccc
Confidence 011 1121 12 356655443 2 22110 00 1100 011344799999999999877654
No 50
>PF07394 DUF1501: Protein of unknown function (DUF1501); InterPro: IPR010869 This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.
Probab=89.28 E-value=2.4 Score=44.62 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=73.9
Q ss_pred CCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC----cEEEEecCCCCcccccccCCCCCCcccCC
Q 011613 340 RRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSGEPLLKDG 415 (481)
Q Consensus 340 ~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~g----t~vIITSDHGn~e~m~~~d~~g~~~~~~G 415 (481)
..-.+++|++..-|. |..........+..+|+.|..+++.|++.| ++|+++||=|..-. +++ ..|
T Consensus 244 ~g~~v~~V~~gGwDT--H~~~~~~~~~ll~~L~~alaaf~~dL~~~g~~d~t~vv~~SEFGRt~~-----~N~----~~G 312 (392)
T PF07394_consen 244 AGVRVVFVSLGGWDT--HSNQGNRHARLLPELDQALAAFIQDLKERGLLDDTLVVTMSEFGRTPR-----ENG----SGG 312 (392)
T ss_pred cCCEEEEECCCCccC--ccccHhHHHHHHHHHHHHHHHHHHHHHhcCCcCceEEEEeeecCCCcc-----cCC----CCC
Confidence 456788999887775 444444555667999999999999999865 89999999996321 222 112
Q ss_pred CccccccCCCceeeEEEEcCCCCCCccccc--cCC------CcccccHHHHHHHHhCCCCC
Q 011613 416 NIQVLTSHTLKPVPIAIGGPGLPDDVKFRT--DLP------NGGLANVAATFINLHGYEAP 468 (481)
Q Consensus 416 ~~~p~t~HT~~~VP~Ii~~p~~~~~~~~~~--~~~------~g~L~DIaPTIL~llGi~~P 468 (481)
|.|-..-=+.++.|.+++.|..+.+ .+. .....|+..|++..+|++.-
T Consensus 313 -----tDH~g~g~~~~v~GGgv~gG~v~G~~p~l~~~~~~~~~~~~dl~~t~~~~~~~d~~ 368 (392)
T PF07394_consen 313 -----TDHWGWGGSMLVAGGGVKGGRVYGETPSLGEDPLDNPVSPRDLYATRLLPLGIDPR 368 (392)
T ss_pred -----CCCCCCcceEEEeCCCcCCCcEeCCCCCcccccccCCcChhhccCCeeeccccChH
Confidence 6773333457777887754422222 010 11234888888888877654
No 51
>COG3379 Uncharacterized conserved protein [Function unknown]
Probab=87.20 E-value=0.37 Score=51.06 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=23.8
Q ss_pred cccccHHHHHHHHhCCCCCC-CCCC-Ccee
Q 011613 450 GGLANVAATFINLHGYEAPS-DYEP-SLIE 477 (481)
Q Consensus 450 g~L~DIaPTIL~llGi~~P~-em~G-sLl~ 477 (481)
.++.|||||||.|+|++.|. ++.| +++.
T Consensus 439 ~~IyDvaPTIL~L~gi~~~~~~~~G~~l~k 468 (471)
T COG3379 439 VSIYDVAPTILKLYGINCPSDEKIGRELVK 468 (471)
T ss_pred eeeEeechHHHHHhCCCCCccccccchhhc
Confidence 46899999999999999995 4778 7764
No 52
>PF04185 Phosphoesterase: Phosphoesterase family; InterPro: IPR007312 This entry includes both bacterial phospholipase C enzymes (3.1.4.3 from EC) and eukaryotic acid phosphatases 3.1.3.2 from EC.; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2D1G_B.
Probab=86.56 E-value=5.1 Score=42.24 Aligned_cols=117 Identities=12% Similarity=0.021 Sum_probs=54.7
Q ss_pred HHHHhCC-CcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc----CcEEEEecCCCCc--ccccccCCC
Q 011613 335 KAILSRR-FHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKV----GGIYLVTADHGNA--EDMVKRNKS 407 (481)
Q Consensus 335 ~~i~~~~-~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~----gt~vIITSDHGn~--e~m~~~d~~ 407 (481)
+.++++. |.|.++.. +.-.-+|-+.. .+..=|..|++++++|... +|+||||=|-+.- +.. .+.
T Consensus 248 ~d~~~g~LP~~sfI~p-~~~~d~Hp~~~-----~~~~gd~~l~~vv~ai~~sp~W~~T~iiIt~DE~gG~~DHV---~pp 318 (376)
T PF04185_consen 248 ADLANGTLPQVSFIEP-NMCNDMHPPYS-----VIADGDAFLARVVEAIRNSPYWKNTAIIITYDENGGFYDHV---PPP 318 (376)
T ss_dssp HHHHTT---SEEEEE---GGGS--TTT-------HHHHHHHHHHHHHHHHCSTTGGGEEEEEEES--TT-----------
T ss_pred HHHHcCCCCceEEEEe-cCcCCCCCCCC-----chhHHHHHHHHHHHHHhcCcCcCCeEEEEEEecCCCcCCCC---CCC
Confidence 3344444 66766664 22223454421 1466788999999999864 3888888775431 111 000
Q ss_pred CCCcccCCCcc----ccccC-CCceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCCC
Q 011613 408 GEPLLKDGNIQ----VLTSH-TLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYE 466 (481)
Q Consensus 408 g~~~~~~G~~~----p~t~H-T~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi~ 466 (481)
. .....+. +.... -+.|||+|+++|-.++|..... .....-|.-||-+++|||
T Consensus 319 ~---~~~~~~~~~~g~~~~~g~G~RVP~ivISP~~k~G~v~~~---~ydh~Silrtie~~~gLP 376 (376)
T PF04185_consen 319 R---SPVPNPDEWVGPFGFDGLGPRVPAIVISPYAKGGTVDHT---PYDHTSILRTIEERFGLP 376 (376)
T ss_dssp -----TTTT------STT------B--EEEESTTB-TTEEE------EETHHHHHHHHHHHT--
T ss_pred C---CCccccccccccCCCCCccccCCeEEeCCCCCCCcEeCC---ccchhHHHHHHHHHhCCC
Confidence 0 0000000 00011 1469999999997765533221 234578999999999986
No 53
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=86.36 E-value=2.6 Score=40.61 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=51.1
Q ss_pred ceEEEEeecCCCc-cccHHhHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEee
Q 011613 50 TLHLIGLLSDGGV-HSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGG 128 (481)
Q Consensus 50 ~lHl~GL~Sdggv-Hsh~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~~~~~~~~~iasv~G 128 (481)
.-.++=|||||.- -+-++.+.+-.++|++.||+ ||.|.=|-. . ++..+.+++. . .|
T Consensus 111 ~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~---iytIgiG~~---d------~~~l~~iA~~----t-------gG 167 (191)
T cd01455 111 DEAIVIVLSDANLERYGIQPKKLADALAREPNVN---AFVIFIGSL---S------DEADQLQREL----P-------AG 167 (191)
T ss_pred CCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCE---EEEEEecCC---C------HHHHHHHHhC----C-------CC
Confidence 4568999999996 55568888778999999983 555543431 0 2222222322 1 49
Q ss_pred cccccccCCCCChHHHHHHHHHHHh
Q 011613 129 RMYVTMDRYENDWDVVKRGWDAQVL 153 (481)
Q Consensus 129 R~y~aMDr~d~rw~r~~~ay~~~~~ 153 (481)
|||+|.|. +-.++.|+.|..
T Consensus 168 ~~F~A~d~-----~~L~~iy~~I~~ 187 (191)
T cd01455 168 KAFVCMDT-----SELPHIMQQIFT 187 (191)
T ss_pred cEEEeCCH-----HHHHHHHHHHHH
Confidence 99978776 788888887763
No 54
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=78.36 E-value=9.8 Score=35.14 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=54.2
Q ss_pred HhHHHHHHHHHHcCCCeEEEEEEecCCCCCCC---------chHHHHHHHHHHHHHHhcCCCCceEEEEeecc--ccccc
Q 011613 67 DQLQLLLKGASERGAKRIRLHILTDGRDVLDG---------SSVGFVETIEKDLAELRGKGVDAQIASGGGRM--YVTMD 135 (481)
Q Consensus 67 ~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~---------s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~--y~aMD 135 (481)
+.+.++.+++++.|++-+.+|+.+........ .+.+++++..+.++.+ |+. .|.+.+|++ + .-+
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~l---g~~-~i~~~~g~~~~~-~~~ 101 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRL---GAK-YIVVHSGRYPSG-PED 101 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHH---TBS-EEEEECTTESSS-TTS
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHh---CCC-ceeecCcccccc-cCC
Confidence 46789999999999987889999988886431 2366777777767777 774 677778843 2 111
Q ss_pred CCCCChHHHHHHHHHHH
Q 011613 136 RYENDWDVVKRGWDAQV 152 (481)
Q Consensus 136 r~d~rw~r~~~ay~~~~ 152 (481)
-++.+|+++.+.++.++
T Consensus 102 ~~~~~~~~~~~~l~~l~ 118 (213)
T PF01261_consen 102 DTEENWERLAENLRELA 118 (213)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 11445666555555444
No 55
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=72.21 E-value=16 Score=34.48 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=63.3
Q ss_pred chhhhcccCCccc--cc---cchhHHHHHHhc-----CCCCCchhHHhhhhhcc--CC--ceEEEEeecCCCccccHHhH
Q 011613 4 SEVGHNALGAGRI--FA---QGAKLVDLALAS-----GKIYQDEGFNYIKPSFE--TG--TLHLIGLLSDGGVHSRLDQL 69 (481)
Q Consensus 4 SEvGH~~iGaGrv--v~---q~~~ri~~~i~~-----g~~~~~~~~~~~~~~~~--~~--~lHl~GL~SdggvHsh~~hl 69 (481)
+.||=..+++|.- +. .|...+...++. |.-.=..++..+.+.++ ++ .-+++=|+|||.-+--. -+
T Consensus 47 ~~vglv~f~~~~a~~~~PlT~D~~~~~~~L~~~~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~-~~ 125 (183)
T cd01453 47 SQLGIISIKNGRAEKLTDLTGNPRKHIQALKTARECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPG-NI 125 (183)
T ss_pred ccEEEEEEcCCccEEEECCCCCHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChh-hH
Confidence 5677777766633 22 234445555543 21111122333333331 11 34566678887654221 24
Q ss_pred HHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHH
Q 011613 70 QLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWD 149 (481)
Q Consensus 70 ~~l~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDr~d~rw~r~~~ay~ 149 (481)
.++++.++++|+ +|++=.| |-+ ...|++ +.+. -.||||.+.|. +.+...|.
T Consensus 126 ~~~~~~l~~~~I-~v~~Igi--G~~------~~~L~~----ia~~-----------tgG~~~~~~~~-----~~l~~~~~ 176 (183)
T cd01453 126 YETIDKLKKENI-RVSVIGL--SAE------MHICKE----ICKA-----------TNGTYKVILDE-----THLKELLL 176 (183)
T ss_pred HHHHHHHHHcCc-EEEEEEe--chH------HHHHHH----HHHH-----------hCCeeEeeCCH-----HHHHHHHH
Confidence 567889999998 4666566 411 122222 2332 25999988887 67777776
Q ss_pred HHH
Q 011613 150 AQV 152 (481)
Q Consensus 150 ~~~ 152 (481)
.++
T Consensus 177 ~~~ 179 (183)
T cd01453 177 EHV 179 (183)
T ss_pred hcC
Confidence 543
No 56
>PRK09453 phosphodiesterase; Provisional
Probab=68.71 E-value=15 Score=34.15 Aligned_cols=68 Identities=16% Similarity=0.079 Sum_probs=40.7
Q ss_pred EEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEE--EecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeec
Q 011613 54 IGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHI--LTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGR 129 (481)
Q Consensus 54 ~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~--~~DGrD~~p~s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR 129 (481)
++++|| +|...+.+.++++.+++.++. .+||+ +.|.-...+.......+++.+.+++. +. ++-.|.|-
T Consensus 3 i~viSD--~Hg~~~~~~~~l~~~~~~~~d-~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~---~~--~v~~V~GN 72 (182)
T PRK09453 3 LMFASD--THGSLPATEKALELFAQSGAD-WLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY---AD--KIIAVRGN 72 (182)
T ss_pred EEEEEe--ccCCHHHHHHHHHHHHhcCCC-EEEEcccccccCcCCCCccccCHHHHHHHHHhc---CC--ceEEEccC
Confidence 578888 899999999999999888885 44774 33321111111111134454545554 43 56666664
No 57
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=67.24 E-value=18 Score=33.36 Aligned_cols=61 Identities=23% Similarity=0.150 Sum_probs=37.1
Q ss_pred HHhHHHHHHHHHHcCCCeEEEEEEe---cCCCCCCC---chHHHHHHHHHHHHHHhcCCCCceEEEEeeccc
Q 011613 66 LDQLQLLLKGASERGAKRIRLHILT---DGRDVLDG---SSVGFVETIEKDLAELRGKGVDAQIASGGGRMY 131 (481)
Q Consensus 66 ~~hl~~l~~~a~~~g~~~v~iH~~~---DGrD~~p~---s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~y 131 (481)
.+++...+++|++.|++.+.+|... -..+.... -..+.+++|.+.+++. |+ +|+-=--.++
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~---gv--~i~lE~~~~~ 136 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEY---GV--RIALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHH---TS--EEEEE-SSSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhh---cc--eEEEecccCc
Confidence 8999999999999999999999652 11221111 1233455555555555 65 5654444443
No 58
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=64.08 E-value=1.1e+02 Score=35.26 Aligned_cols=41 Identities=15% Similarity=0.010 Sum_probs=28.3
Q ss_pred CceeeEEEEcCCCCCCccccccCCCcccccHHHHHHHHhCCCCC
Q 011613 425 LKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAP 468 (481)
Q Consensus 425 ~~~VP~Ii~~p~~~~~~~~~~~~~~g~L~DIaPTIL~llGi~~P 468 (481)
..+||+||++|-.+.|....+ ...-.-|.-+|-+.+|++.|
T Consensus 389 G~RVP~iVISPwsrgG~V~s~---~~DHtSvLrflE~~fgl~~~ 429 (690)
T TIGR03396 389 GPRVPMYVISPWSKGGWVNSQ---VFDHTSVLRFLEKRFGVREP 429 (690)
T ss_pred cceeeEEEECCCCCCCcccCc---cccHHHHHHHHHHHhCCCCc
Confidence 468999999997655533221 12345677888888998877
No 59
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=63.30 E-value=26 Score=34.59 Aligned_cols=81 Identities=11% Similarity=0.088 Sum_probs=50.9
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEEecCCCCCC--C---chHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCC
Q 011613 65 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLD--G---SSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYEN 139 (481)
Q Consensus 65 h~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p--~---s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDr~d~ 139 (481)
-.+.+..+.+.+++.|++ +.+|+-...-=..| . .+++++++..+.++.+ |.. .|..-.|++. ..+| ..
T Consensus 43 ~~~~~~~l~~~~~~~gl~-ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~l---Ga~-~vv~h~g~~~-~~~~-e~ 115 (273)
T smart00518 43 SEETAEKFKEALKENNID-VSVHAPYLINLASPDKEKVEKSIERLIDEIKRCEEL---GIK-ALVFHPGSYL-KQSK-EE 115 (273)
T ss_pred CHHHHHHHHHHHHHcCCC-EEEECCceecCCCCCHHHHHHHHHHHHHHHHHHHHc---CCC-EEEEcccccc-CCCH-HH
Confidence 345688889999999995 88997332211222 1 2344555555555555 764 5666678776 5566 66
Q ss_pred ChHHHHHHHHHHH
Q 011613 140 DWDVVKRGWDAQV 152 (481)
Q Consensus 140 rw~r~~~ay~~~~ 152 (481)
.|++..++++.++
T Consensus 116 ~~~~~~~~l~~l~ 128 (273)
T smart00518 116 ALNRIIESLNEVI 128 (273)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666555
No 60
>COG3379 Uncharacterized conserved protein [Function unknown]
Probab=62.96 E-value=21 Score=38.28 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=40.8
Q ss_pred CCCcEEEEeCCCCccCCCC----------------CCHHHHH-HHHHHHHHHHHHHHHHHHhcCcEEEEecCCCC
Q 011613 340 RRFHQVRVNLPNSDMVGHT----------------GDIEATV-VACKAADEAVKIIIDAIEKVGGIYLVTADHGN 397 (481)
Q Consensus 340 ~~~dfi~vnfa~~D~vGHt----------------g~~~a~~-~aIe~vD~~lGrLl~al~~~gt~vIITSDHGn 397 (481)
..+|+..--+..+|-+-|. ..++..+ +--+-||+.||.+++.+.-..+.++|.||||.
T Consensus 190 k~wD~~~~v~~gTDRv~H~~w~y~dp~H~lypg~~n~yEnvi~eyy~LvD~~IG~~~~~i~~~e~~l~vvSDHGf 264 (471)
T COG3379 190 KEWDCFGFVMIGTDRVHHALWKYLDPEHPLYPGEQNKYENVIPEYYSLVDKYIGLKLEIIGFEETYLTVVSDHGF 264 (471)
T ss_pred ccccceeEEEEehhHHhhhhhhhcCccccCCcccCchHhHHHHHHHHHHHHHHHHHHHhccccceEEEEEecccc
Confidence 4467766655666644332 1233333 34589999999999999866789999999995
No 61
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=58.60 E-value=18 Score=35.68 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=36.7
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEEecCCCCCC----CchHHHHHHHHHHHHHHhcCCCCceEE
Q 011613 65 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLD----GSSVGFVETIEKDLAELRGKGVDAQIA 124 (481)
Q Consensus 65 h~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p----~s~~~~~~~l~~~~~~~~~~~~~~~ia 124 (481)
.++++...+++|+..|++.+.+|....|+...+ +...+.+++|.+..++. |+ +||
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~---gv--~l~ 146 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENI---GM--DLI 146 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc---CC--EEE
Confidence 568999999999999999999998766654332 12223444444444443 65 666
No 62
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=56.62 E-value=33 Score=31.29 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=35.2
Q ss_pred hHHhhhhhc-c-CCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEEecCCCC
Q 011613 38 GFNYIKPSF-E-TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 95 (481)
Q Consensus 38 ~~~~~~~~~-~-~~~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~ 95 (481)
.|..+.+.+ + .+.-+.+=|+|||--++-..+.....+.+++.|+ .||++.=|.+.
T Consensus 88 al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi---~i~~i~ig~~~ 144 (180)
T cd01467 88 AIGLAIKRLKNSEAKERVIVLLTDGENNAGEIDPATAAELAKNKGV---RIYTIGVGKSG 144 (180)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCC---EEEEEEecCCC
Confidence 344444544 2 2355788899999766544445555677778776 57877777654
No 63
>PRK13685 hypothetical protein; Provisional
Probab=54.83 E-value=41 Score=34.62 Aligned_cols=81 Identities=17% Similarity=0.220 Sum_probs=45.1
Q ss_pred eEEEEeecCCCccccH-----HhHHHHHHHHHHcCCCeEEEEEEecCCC----------CCCCchHHHHHHHHHHHHHHh
Q 011613 51 LHLIGLLSDGGVHSRL-----DQLQLLLKGASERGAKRIRLHILTDGRD----------VLDGSSVGFVETIEKDLAELR 115 (481)
Q Consensus 51 lHl~GL~SdggvHsh~-----~hl~~l~~~a~~~g~~~v~iH~~~DGrD----------~~p~s~~~~~~~l~~~~~~~~ 115 (481)
-+++ |+|||.-++-. ......++.+++.|++ ||.+.=|.+ +.+.-..+.+++| ++.
T Consensus 195 ~~II-LlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~---i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~i----A~~- 265 (326)
T PRK13685 195 ARIV-LMSDGKETVPTNPDNPRGAYTAARTAKDQGVP---ISTISFGTPYGSVEINGQRQPVPVDDESLKKI----AQL- 265 (326)
T ss_pred CEEE-EEcCCCCCCCCCCCCcccHHHHHHHHHHcCCe---EEEEEECCCCCCcCcCCceeeecCCHHHHHHH----HHh-
Confidence 3455 99999877532 2234567888888873 555553432 2112222333333 222
Q ss_pred cCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCC
Q 011613 116 GKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGE 155 (481)
Q Consensus 116 ~~~~~~~iasv~GR~y~aMDr~d~rw~r~~~ay~~~~~g~ 155 (481)
. .|||| -.+. =+-.+++|+.|-.-.
T Consensus 266 ---t-------gG~~~-~~~~----~~~L~~if~~I~~~~ 290 (326)
T PRK13685 266 ---S-------GGEFY-TAAS----LEELRAVYATLQQQI 290 (326)
T ss_pred ---c-------CCEEE-EcCC----HHHHHHHHHHHHHHh
Confidence 1 48999 4433 256788888876443
No 64
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.14 E-value=49 Score=32.30 Aligned_cols=121 Identities=18% Similarity=0.273 Sum_probs=71.4
Q ss_pred hcccCCccccccchhHHHHHHhcCC-CCCchhHHh-hhhhc-cCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeE
Q 011613 8 HNALGAGRIFAQGAKLVDLALASGK-IYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRI 84 (481)
Q Consensus 8 H~~iGaGrvv~q~~~ri~~~i~~g~-~~~~~~~~~-~~~~~-~~~~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v 84 (481)
.+.+|||-|.- .....++++.|. |.=.|.+.. +++.+ +.+-+.+-| +|+--+ +..|.+.|+.-
T Consensus 67 ~~~vGaGTV~~--~~~~~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG------~~T~~E-----~~~A~~~Gad~- 132 (213)
T PRK06552 67 EVLIGAGTVLD--AVTARLAILAGAQFIVSPSFNRETAKICNLYQIPYLPG------CMTVTE-----IVTALEAGSEI- 132 (213)
T ss_pred CeEEeeeeCCC--HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEECC------cCCHHH-----HHHHHHcCCCE-
Confidence 48999999976 567789999884 445555544 55555 445666664 554433 33455788863
Q ss_pred EEEEEecCCCCCCCchHHHHHHHHHHHH----------------HHhcCCCCceEEEEeecccccccCCCCChHHHHHHH
Q 011613 85 RLHILTDGRDVLDGSSVGFVETIEKDLA----------------ELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGW 148 (481)
Q Consensus 85 ~iH~~~DGrD~~p~s~~~~~~~l~~~~~----------------~~~~~~~~~~iasv~GR~y~aMDr~d~rw~r~~~ay 148 (481)
|=+|- ..+ -+.+|++.|..-+. ++-+.|. ....+++-.+ .-.. .++|+.+++.-
T Consensus 133 -vklFP----a~~-~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa--~~vavgs~l~-~~~~-~~~~~~i~~~a 202 (213)
T PRK06552 133 -VKLFP----GST-LGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGA--DAVGIGGELN-KLAS-QGDFDLITEKA 202 (213)
T ss_pred -EEECC----ccc-CCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCC--cEEEEchHHh-Cccc-cCCHHHHHHHH
Confidence 33443 223 45888887764433 2211233 3444444445 4445 67898887765
Q ss_pred HHHH
Q 011613 149 DAQV 152 (481)
Q Consensus 149 ~~~~ 152 (481)
+.+.
T Consensus 203 ~~~~ 206 (213)
T PRK06552 203 KKYM 206 (213)
T ss_pred HHHH
Confidence 5444
No 65
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=49.36 E-value=63 Score=32.40 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=19.5
Q ss_pred EEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEEecC
Q 011613 54 IGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDG 92 (481)
Q Consensus 54 ~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~DG 92 (481)
+=|+|||.-++...-+..+++.|++.++ .||+|.=|
T Consensus 168 iIllTDG~~~~~~~~~~~~~~~~~~~~v---~vy~I~~~ 203 (296)
T TIGR03436 168 LIVISDGGDNRSRDTLERAIDAAQRADV---AIYSIDAR 203 (296)
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHcCC---EEEEeccC
Confidence 5566666555555555555655555543 35555433
No 66
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=47.58 E-value=1.1e+02 Score=30.87 Aligned_cols=30 Identities=17% Similarity=0.401 Sum_probs=18.5
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEE
Q 011613 50 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRL 86 (481)
Q Consensus 50 ~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~i 86 (481)
.+|++-=+|| ++.+...++.|+++|. +|.+
T Consensus 107 ~iri~~~~~~------~~~~~~~i~~ak~~G~-~v~~ 136 (275)
T cd07937 107 IFRIFDALND------VRNLEVAIKAVKKAGK-HVEG 136 (275)
T ss_pred EEEEeecCCh------HHHHHHHHHHHHHCCC-eEEE
Confidence 4555554454 6777777777777775 3444
No 67
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=47.31 E-value=21 Score=36.92 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=25.5
Q ss_pred eecCCCccccHHhHHHHHHHHHHcCCCeEEE
Q 011613 56 LLSDGGVHSRLDQLQLLLKGASERGAKRIRL 86 (481)
Q Consensus 56 L~SdggvHsh~~hl~~l~~~a~~~g~~~v~i 86 (481)
|+|=||+|| +|+++.+..|++.|.+-|++
T Consensus 67 lvT~GgiQS--Nh~r~tAavA~~lGl~~v~i 95 (323)
T COG2515 67 LVTYGGIQS--NHVRQTAAVAAKLGLKCVLI 95 (323)
T ss_pred EEEecccch--hHHHHHHHHHHhcCCcEEEE
Confidence 689999988 69999999999999987744
No 68
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=46.88 E-value=47 Score=29.61 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=39.3
Q ss_pred hHHhhhhhc-cCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHH
Q 011613 38 GFNYIKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 107 (481)
Q Consensus 38 ~~~~~~~~~-~~~~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~~l 107 (481)
+|+.+++.. ..+....+=|+|||..-+-.+.+...++ +.. .++.||+|.=|.++.+ .+|++|
T Consensus 83 aL~~a~~~~~~~~~~~~IilltDG~~~~~~~~i~~~v~---~~~-~~~~i~~~~~g~~~~~----~~L~~L 145 (155)
T PF13768_consen 83 ALRAALALLQRPGCVRAIILLTDGQPVSGEEEILDLVR---RAR-GHIRIFTFGIGSDADA----DFLREL 145 (155)
T ss_pred HHHHHHHhcccCCCccEEEEEEeccCCCCHHHHHHHHH---hcC-CCceEEEEEECChhHH----HHHHHH
Confidence 344444333 2357888889999996444455555554 332 5688999998887664 566655
No 69
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=45.47 E-value=82 Score=28.15 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=25.2
Q ss_pred eEEEEeecCCCccccH---HhHHHHHHHHHHcCCCeEEEEEEecC
Q 011613 51 LHLIGLLSDGGVHSRL---DQLQLLLKGASERGAKRIRLHILTDG 92 (481)
Q Consensus 51 lHl~GL~SdggvHsh~---~hl~~l~~~a~~~g~~~v~iH~~~DG 92 (481)
-+++ |+|||...+.. +.+..+++.+++.| |.||+|.=|
T Consensus 98 ~~iv-l~TDG~~~~~~~~~~~~~~~~~~~~~~~---v~i~~i~~g 138 (170)
T cd01465 98 NRIL-LATDGDFNVGETDPDELARLVAQKRESG---ITLSTLGFG 138 (170)
T ss_pred eEEE-EEeCCCCCCCCCCHHHHHHHHHHhhcCC---eEEEEEEeC
Confidence 5666 99999876543 44555555555555 568888888
No 70
>PRK01060 endonuclease IV; Provisional
Probab=45.41 E-value=81 Score=31.17 Aligned_cols=80 Identities=13% Similarity=-0.008 Sum_probs=48.8
Q ss_pred cHHhHHHHHHHHHHcCCC--eEEEEEEecCCCCCCCc-----hHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCC
Q 011613 65 RLDQLQLLLKGASERGAK--RIRLHILTDGRDVLDGS-----SVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRY 137 (481)
Q Consensus 65 h~~hl~~l~~~a~~~g~~--~v~iH~~~DGrD~~p~s-----~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDr~ 137 (481)
--+.+.++-+++++.|++ .+.+|+-...+-+.|.. +++++++..+..+++ |+. .|..-.|+++ -..+.
T Consensus 45 ~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~l---ga~-~vv~h~G~~~-~~~~~ 119 (281)
T PRK01060 45 EELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAAL---GAK-LLVFHPGSHL-GDIDE 119 (281)
T ss_pred CHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHc---CCC-EEEEcCCcCC-CCCcH
Confidence 344577788889999995 37899977666666644 245555555555555 764 5666778765 33331
Q ss_pred CCChHHHHHHHH
Q 011613 138 ENDWDVVKRGWD 149 (481)
Q Consensus 138 d~rw~r~~~ay~ 149 (481)
+..|++..++.+
T Consensus 120 ~~~~~~~~e~l~ 131 (281)
T PRK01060 120 EDCLARIAESLN 131 (281)
T ss_pred HHHHHHHHHHHH
Confidence 224444444444
No 71
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=40.90 E-value=62 Score=30.06 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=41.8
Q ss_pred ccHHhHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHH
Q 011613 64 SRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 114 (481)
Q Consensus 64 sh~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~ 114 (481)
-++..|..++|++.+.-.+.++||++|=--+..|..-...+++|.+.|...
T Consensus 33 hQi~Nl~~F~El~vk~~~~~~~i~LvT~~d~~~~~~Q~~~l~~i~~sl~~~ 83 (148)
T cd02685 33 HQIRNFLRFCELVVKPPCELKYIHLVTGEDEDNGKQQIEALEEIKQSLASH 83 (148)
T ss_pred HHHHHHHHHHHHHhcCccceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhC
Confidence 468889999999998666789999999544456777888999999988876
No 72
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=40.28 E-value=1.9e+02 Score=25.25 Aligned_cols=74 Identities=24% Similarity=0.340 Sum_probs=42.1
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeec
Q 011613 50 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGR 129 (481)
Q Consensus 50 ~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR 129 (481)
.--.+=|+|||.-. .-....++.+++.| |.||++.=|.+..+ ...+++| .+. . .|+
T Consensus 99 ~~~~iv~iTDG~~~---~~~~~~~~~~~~~~---i~i~~v~~~~~~~~---~~~l~~l----a~~----t-------gG~ 154 (172)
T PF13519_consen 99 RRRAIVLITDGEDN---SSDIEAAKALKQQG---ITIYTVGIGSDSDA---NEFLQRL----AEA----T-------GGR 154 (172)
T ss_dssp EEEEEEEEES-TTH---CHHHHHHHHHHCTT---EEEEEEEES-TT-E---HHHHHHH----HHH----T-------EEE
T ss_pred CceEEEEecCCCCC---cchhHHHHHHHHcC---CeEEEEEECCCccH---HHHHHHH----HHh----c-------CCE
Confidence 55666789999766 22234677777766 56899988888777 2334433 222 1 588
Q ss_pred ccccccCCCCChHHHHHHHHHH
Q 011613 130 MYVTMDRYENDWDVVKRGWDAQ 151 (481)
Q Consensus 130 ~y~aMDr~d~rw~r~~~ay~~~ 151 (481)
|| .-+ +.=+.+..+++.|
T Consensus 155 ~~-~~~---~~~~~l~~~~~~I 172 (172)
T PF13519_consen 155 YF-HVD---NDPEDLDDAFQQI 172 (172)
T ss_dssp EE-EE----SSSHHHHHHHHH-
T ss_pred EE-Eec---CCHHHHHHHHhcC
Confidence 98 332 1226777776653
No 73
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=40.20 E-value=1.4e+02 Score=29.03 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=34.3
Q ss_pred ceEEEEeecCCCcccc-------HHhHHHHHHHHHHcCCCeEEEEEEecCCCCC---CC----chHHHHHHHHHHHHHH
Q 011613 50 TLHLIGLLSDGGVHSR-------LDQLQLLLKGASERGAKRIRLHILTDGRDVL---DG----SSVGFVETIEKDLAEL 114 (481)
Q Consensus 50 ~lHl~GL~SdggvHsh-------~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~---p~----s~~~~~~~l~~~~~~~ 114 (481)
.+-.++-+|+.-.+.. +++++..+++|++.|++.|.+|.-....... |. ...++++++.+..++.
T Consensus 60 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~ 138 (274)
T COG1082 60 EITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEEL 138 (274)
T ss_pred EEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 4444455555333333 6666667777777777666666644333322 22 2345555555544444
No 74
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.89 E-value=64 Score=31.83 Aligned_cols=121 Identities=21% Similarity=0.241 Sum_probs=74.9
Q ss_pred hhhcccCCccccccchhHHHHHHhcC-CCCCchhHHh-hhhhc-cCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCC
Q 011613 6 VGHNALGAGRIFAQGAKLVDLALASG-KIYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAK 82 (481)
Q Consensus 6 vGH~~iGaGrvv~q~~~ri~~~i~~g-~~~~~~~~~~-~~~~~-~~~~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~ 82 (481)
..++.+|||-|+- ......+++.| +|.=.|.+.. +++.+ +.+.+.+-|-+|..- +..|.+.|++
T Consensus 68 ~p~~~vGaGTVl~--~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsE-----------i~~A~~~Ga~ 134 (222)
T PRK07114 68 LPGMILGVGSIVD--AATAALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSE-----------IGYAEELGCE 134 (222)
T ss_pred CCCeEEeeEeCcC--HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHH-----------HHHHHHCCCC
Confidence 3468999999986 56678899988 4555666654 55555 457899999998765 3467788986
Q ss_pred eEEEEEEecCCCCCCCchHHHHHHHH------------------HHHHHHhcCCCCceEEEEeeccccc---ccCCCCCh
Q 011613 83 RIRLHILTDGRDVLDGSSVGFVETIE------------------KDLAELRGKGVDAQIASGGGRMYVT---MDRYENDW 141 (481)
Q Consensus 83 ~v~iH~~~DGrD~~p~s~~~~~~~l~------------------~~~~~~~~~~~~~~iasv~GR~y~a---MDr~d~rw 141 (481)
.|=+|-=+ .-+..|++.|. +-+.++-+.| -+|-+.|..-+- ++ .++|
T Consensus 135 --~vKlFPA~-----~~G~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aG---a~avg~Gs~L~~~~~~~--~~~~ 202 (222)
T PRK07114 135 --IVKLFPGS-----VYGPGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAG---VTCVGMGSKLIPKEALA--AKDY 202 (222)
T ss_pred --EEEECccc-----ccCHHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCC---CEEEEEChhhcCccccc--cccH
Confidence 35555311 23577886654 1222222113 356566776411 22 4688
Q ss_pred HHHHHHHHHH
Q 011613 142 DVVKRGWDAQ 151 (481)
Q Consensus 142 ~r~~~ay~~~ 151 (481)
+.+++..+..
T Consensus 203 ~~i~~~a~~~ 212 (222)
T PRK07114 203 AGIEQKVREA 212 (222)
T ss_pred HHHHHHHHHH
Confidence 8777654433
No 75
>PRK13753 dihydropteroate synthase; Provisional
Probab=38.99 E-value=1.6e+02 Score=30.12 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=45.9
Q ss_pred eEEEEee-------cCCCccccHHhHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHh
Q 011613 51 LHLIGLL-------SDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELR 115 (481)
Q Consensus 51 lHl~GL~-------SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~~ 115 (481)
.|+||.| ||||.+...|...+=++...+.|..=|=|=+=+..-...|-|..+=++.+...++.+.
T Consensus 2 ~~iMGIlNvTPDSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~ 73 (279)
T PRK13753 2 VTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALS 73 (279)
T ss_pred ceEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5899987 9999998888888888888899986443333333333345566677776667777764
No 76
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=38.36 E-value=84 Score=29.97 Aligned_cols=44 Identities=5% Similarity=-0.019 Sum_probs=33.8
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEEecCCCCC
Q 011613 50 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVL 96 (481)
Q Consensus 50 ~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~ 96 (481)
....+=|++||+-.++-+.....++.++++|+ .||++.-|.+..
T Consensus 131 v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI---~i~tVGiG~~~d 174 (193)
T cd01477 131 YKKVVIVFASDYNDEGSNDPRPIAARLKSTGI---AIITVAFTQDES 174 (193)
T ss_pred CCeEEEEEecCccCCCCCCHHHHHHHHHHCCC---EEEEEEeCCCCC
Confidence 46778899998776665556777888899987 488888887644
No 77
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=37.79 E-value=1.6e+02 Score=28.96 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=30.3
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEE
Q 011613 50 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHI 88 (481)
Q Consensus 50 ~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~ 88 (481)
++--++++|| +|+....+.++++.++++++. .+||+
T Consensus 3 ~~~kIl~iSD--iHgn~~~le~l~~~~~~~~~D-~vv~~ 38 (224)
T cd07388 3 TVRYVLATSN--PKGDLEALEKLVGLAPETGAD-AIVLI 38 (224)
T ss_pred ceeEEEEEEe--cCCCHHHHHHHHHHHhhcCCC-EEEEC
Confidence 4556889999 899999999999999988885 55765
No 78
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=36.59 E-value=83 Score=26.81 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=33.5
Q ss_pred CceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEEecCC
Q 011613 49 GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGR 93 (481)
Q Consensus 49 ~~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~DGr 93 (481)
...+++=++|||..++...-+...++.+++.+++ ||++.=|-
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~---v~~v~~g~ 141 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAEAARELRKLGIT---VYTIGIGD 141 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCE---EEEEEcCC
Confidence 3789999999999988887888899999998764 55554443
No 79
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=36.42 E-value=51 Score=33.15 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=39.3
Q ss_pred CCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-cEEEEecCC
Q 011613 341 RFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVG-GIYLVTADH 395 (481)
Q Consensus 341 ~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~g-t~vIITSDH 395 (481)
++.++.+++...-.-+ +...++++.-|..|++++..+...+ +++|+||+.
T Consensus 127 ~~~vi~V~l~~l~~~~-----~~R~~~L~~nD~~l~~vl~~l~s~~~ytvIyts~~ 177 (282)
T PF05827_consen 127 KPRVIRVDLPPLPSSS-----ESRKEALSDNDEFLRKVLSKLPSPDPYTVIYTSTP 177 (282)
T ss_pred CCcEEEEECCCCCCcc-----ccchhhhhhhhHHHHHHHHhcCCCCcEEEEEEccC
Confidence 4678888886543322 3445678999999999999999888 999999987
No 80
>PTZ00445 p36-lilke protein; Provisional
Probab=36.39 E-value=55 Score=32.30 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHhcC-cEEEEe-cCC
Q 011613 325 KALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIE----ATVVACKAADEAVKIIIDAIEKVG-GIYLVT-ADH 395 (481)
Q Consensus 325 sa~~vtd~ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~----a~~~aIe~vD~~lGrLl~al~~~g-t~vIIT-SDH 395 (481)
+..+.++..++.|++...-+|.++|-++=..=|+|.+. .-..-+..+-.++..+++++++.| .++|+| ||-
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 66788999999999999999999998886667887432 224456778888999999999988 344444 443
No 81
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=35.97 E-value=1.6e+02 Score=29.04 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=37.2
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHH
Q 011613 50 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 114 (481)
Q Consensus 50 ~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~ 114 (481)
.+|+|+-+|+ .++..+ .+++.+++.|+.-|.||. .++. +.+.++++.+.++++
T Consensus 76 Pl~lM~y~n~--~~~~~~---~~i~~~~~~Gadgvii~d------lp~e-~~~~~~~~~~~~~~~ 128 (244)
T PRK13125 76 PIILMTYLED--YVDSLD---NFLNMARDVGADGVLFPD------LLID-YPDDLEKYVEIIKNK 128 (244)
T ss_pred CEEEEEecch--hhhCHH---HHHHHHHHcCCCEEEECC------CCCC-cHHHHHHHHHHHHHc
Confidence 6899999999 455444 457788899999899983 3333 234566666666766
No 82
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=35.79 E-value=58 Score=32.29 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=12.8
Q ss_pred HHhHHHHHHHHHHcCCCeEEEEE
Q 011613 66 LDQLQLLLKGASERGAKRIRLHI 88 (481)
Q Consensus 66 ~~hl~~l~~~a~~~g~~~v~iH~ 88 (481)
++++...+++|++.|++.|.+|.
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~ 106 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHP 106 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECC
Confidence 45555556666666655555544
No 83
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=34.33 E-value=85 Score=31.05 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=21.6
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEEe
Q 011613 65 RLDQLQLLLKGASERGAKRIRLHILT 90 (481)
Q Consensus 65 h~~hl~~l~~~a~~~g~~~v~iH~~~ 90 (481)
.++.+...+++|++.|++.|.++...
T Consensus 97 ~~~~~~~~i~~a~~lG~~~i~~~~~~ 122 (283)
T PRK13209 97 ALEIMRKAIQLAQDLGIRVIQLAGYD 122 (283)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 46788999999999999988777544
No 84
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=34.20 E-value=52 Score=33.01 Aligned_cols=75 Identities=29% Similarity=0.273 Sum_probs=48.5
Q ss_pred CccCCHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHH----HHHHHHHHHHHHHHHHHhcC-cEEEEecCC
Q 011613 321 QPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVV----ACKAADEAVKIIIDAIEKVG-GIYLVTADH 395 (481)
Q Consensus 321 ~pemsa~~vtd~ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~a~~~----aIe~vD~~lGrLl~al~~~g-t~vIITSDH 395 (481)
.+.|..+++.+.+...++.-+|||+++--+|+-..|-+.-.+...+ +|---|.--.+.-++++++| +.||+.+|-
T Consensus 40 GaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYIivk~Dp 119 (277)
T PRK00994 40 GAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYIIVKADP 119 (277)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEEEEecCc
Confidence 3457777777666667777889999998888877776653332221 11222443344458888887 677888875
No 85
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=34.16 E-value=1.5e+02 Score=26.45 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=11.0
Q ss_pred EEEEEEecCCCCCCC
Q 011613 84 IRLHILTDGRDVLDG 98 (481)
Q Consensus 84 v~iH~~~DGrD~~p~ 98 (481)
-.|-+||||.++...
T Consensus 98 ~~ivl~TDG~~~~~~ 112 (170)
T cd01465 98 NRILLATDGDFNVGE 112 (170)
T ss_pred eEEEEEeCCCCCCCC
Confidence 446799999986443
No 86
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.96 E-value=7 Score=39.64 Aligned_cols=63 Identities=22% Similarity=0.393 Sum_probs=37.8
Q ss_pred CCEEEEee----cCcchHHHHHHhcc-cCCCCCCccCcCCceeEEEeeeecCCCCCcccccCCCCcccccHHHHHHhCCc
Q 011613 200 GDAVVTFN----FRADRMVMLAKALE-YEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGV 274 (481)
Q Consensus 200 gD~vi~~N----fR~DR~rqi~~a~~-~~~f~~f~~~~~~~~~~~~mt~Y~~~~~~~v~fl~~~~~~~~tl~e~Ls~~G~ 274 (481)
|--++|+. ||+||++||+.-|. +|+|. +.|+.|.--..|.. ..++-+.|++.|+++|.
T Consensus 149 ~Gk~ifIDTEgtFrpdRi~~IAe~~~~d~d~~------LdNI~y~Ra~~se~-----------qmelv~~L~~~~se~g~ 211 (335)
T KOG1434|consen 149 GGKAIFIDTEGTFRPDRIKDIAERFKVDPDFT------LDNILYFRAYNSEE-----------QMELVYLLGDFLSEHGK 211 (335)
T ss_pred CceEEEEecCCccchHHHHHHHHHhCCCHHHH------HHHHHHHHHcChHH-----------HHHHHHHHHHHHhhcCc
Confidence 34688885 99999999997774 44432 23432211112211 12334679999999876
Q ss_pred ceEEe
Q 011613 275 RTFAC 279 (481)
Q Consensus 275 ~q~ri 279 (481)
-.+-|
T Consensus 212 ~rlvI 216 (335)
T KOG1434|consen 212 YRLVI 216 (335)
T ss_pred EEEEE
Confidence 55555
No 87
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=33.60 E-value=1.2e+02 Score=29.83 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=40.2
Q ss_pred EEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEEec-CCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEe
Q 011613 54 IGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTD-GRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGG 127 (481)
Q Consensus 54 ~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~D-GrD~~p~s~~~~~~~l~~~~~~~~~~~~~~~iasv~ 127 (481)
+|+.|.+ .. +. =+...++.|++.|++-|=+ ..+ .....|......+++|.+.+++. |. +|.|++
T Consensus 3 lg~~t~~-~~-~~-~l~~~l~~~~~~G~~~vEl--~~~~~~~~~~~~~~~~~~~l~~~~~~~---gl--~v~s~~ 67 (275)
T PRK09856 3 TGMFTCG-HQ-RL-PIEHAFRDASELGYDGIEI--WGGRPHAFAPDLKAGGIKQIKALAQTY---QM--PIIGYT 67 (275)
T ss_pred eeeeehh-he-eC-CHHHHHHHHHHcCCCEEEE--ccCCccccccccCchHHHHHHHHHHHc---CC--eEEEec
Confidence 4666644 22 22 2788899999999975544 322 22333444556788888878877 77 787764
No 88
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=32.92 E-value=2.1e+02 Score=25.52 Aligned_cols=15 Identities=0% Similarity=0.078 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHcCCC
Q 011613 68 QLQLLLKGASERGAK 82 (481)
Q Consensus 68 hl~~l~~~a~~~g~~ 82 (481)
-|..|++.+++..+.
T Consensus 56 ~l~~ll~~~~~g~vd 70 (140)
T cd03770 56 GFNRMIEDIEAGKID 70 (140)
T ss_pred HHHHHHHHHHcCCCC
Confidence 344444444444343
No 89
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=31.90 E-value=2e+02 Score=29.47 Aligned_cols=65 Identities=20% Similarity=0.193 Sum_probs=45.8
Q ss_pred ceEEEEee-------cCCCccccHHhHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHH
Q 011613 50 TLHLIGLL-------SDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 114 (481)
Q Consensus 50 ~lHl~GL~-------SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~ 114 (481)
+-++||.| ||||.|...|...+-++...++|..=+=|=+=+..-...|-|..+-++.+...++.+
T Consensus 14 ~~~imGIlNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l 85 (282)
T PRK11613 14 HPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAI 85 (282)
T ss_pred CceEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 56799997 999999999999998888889998633222222223445566677777776666665
No 90
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=31.87 E-value=1.6e+02 Score=30.40 Aligned_cols=52 Identities=25% Similarity=0.305 Sum_probs=39.8
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCC
Q 011613 65 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGV 119 (481)
Q Consensus 65 h~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~~~~~~ 119 (481)
-++.|..|++.|+++||. |+=+|.=|-|.. .|..+-++.|.+++.++.+.|+
T Consensus 54 el~~l~~L~~~a~~~~V~--Fv~aisPg~~~~-~s~~~d~~~L~~K~~ql~~lGv 105 (306)
T PF07555_consen 54 ELAELKELADAAKANGVD--FVYAISPGLDIC-YSSEEDFEALKAKFDQLYDLGV 105 (306)
T ss_dssp HHHHHHHHHHHHHHTT-E--EEEEEBGTTT---TSHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHcCCE--EEEEECcccccc-cCcHHHHHHHHHHHHHHHhcCC
Confidence 368899999999999995 566777676655 7788889999999999876666
No 91
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=31.18 E-value=2.7e+02 Score=25.23 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEe
Q 011613 327 LEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVT 392 (481)
Q Consensus 327 ~~vtd~ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIIT 392 (481)
....+.+-+.+...+||.+++.+..=|..... ..+. +=+.+.++++.+++.+..+|+.
T Consensus 45 ~~~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~-~~~~-------~~~~~~~li~~~~~~~~~~il~ 102 (183)
T cd04501 45 SQMLVRFYEDVIALKPAVVIIMGGTNDIIVNT-SLEM-------IKDNIRSMVELAEANGIKVILA 102 (183)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeccCccccCC-CHHH-------HHHHHHHHHHHHHHCCCcEEEE
Confidence 34444554555567899999998766654322 2222 2345666777777777544444
No 92
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=30.61 E-value=55 Score=31.23 Aligned_cols=77 Identities=17% Similarity=0.381 Sum_probs=51.9
Q ss_pred ccHHhHHHHHHHHHHcCCCeEEEEE-EecCCCCCCCchHHHHHHHHH----------HHHHHhcCCCCceEEEEeecccc
Q 011613 64 SRLDQLQLLLKGASERGAKRIRLHI-LTDGRDVLDGSSVGFVETIEK----------DLAELRGKGVDAQIASGGGRMYV 132 (481)
Q Consensus 64 sh~~hl~~l~~~a~~~g~~~v~iH~-~~DGrD~~p~s~~~~~~~l~~----------~~~~~~~~~~~~~iasv~GR~y~ 132 (481)
||+=+|+.+++.+++.|- .||||+ +.+|-- .-.-|..||.+.-+ .++...+.|. . ..=|.|
T Consensus 32 ~~i~~ik~ivk~lK~~gK-~vfiHvDLv~Gl~-~~e~~i~fi~~~~~pdGIISTk~~~i~~Akk~~~---~--aIqR~F- 103 (181)
T COG1954 32 GHILNIKEIVKKLKNRGK-TVFIHVDLVEGLS-NDEVAIEFIKEVIKPDGIISTKSNVIKKAKKLGI---L--AIQRLF- 103 (181)
T ss_pred chhhhHHHHHHHHHhCCc-EEEEEeHHhcccC-CchHHHHHHHHhccCCeeEEccHHHHHHHHHcCC---c--eeeeee-
Confidence 699999999999999985 799998 556655 44567777775431 1111111122 1 357999
Q ss_pred cccCCCCChHHHHHHHHHHHh
Q 011613 133 TMDRYENDWDVVKRGWDAQVL 153 (481)
Q Consensus 133 aMDr~d~rw~r~~~ay~~~~~ 153 (481)
..|+ -..+++++.+-.
T Consensus 104 ilDS-----~Al~~~~~~i~~ 119 (181)
T COG1954 104 ILDS-----IALEKGIKQIEK 119 (181)
T ss_pred eecH-----HHHHHHHHHHHH
Confidence 9999 777777776653
No 93
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=30.42 E-value=1.3e+02 Score=29.27 Aligned_cols=119 Identities=19% Similarity=0.348 Sum_probs=72.4
Q ss_pred hhhcccCCccccccchhHHHHHHhcC-CCCCchhHHh-hhhhc-cCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCC
Q 011613 6 VGHNALGAGRIFAQGAKLVDLALASG-KIYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAK 82 (481)
Q Consensus 6 vGH~~iGaGrvv~q~~~ri~~~i~~g-~~~~~~~~~~-~~~~~-~~~~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~ 82 (481)
.+++.+|||-|.- .....++++.| +|.=.|.+.. +++.+ +.+-..+-|.++..- +..|.+.|.+
T Consensus 57 ~~~~~vGAGTVl~--~~~a~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~~TptE-----------i~~A~~~Ga~ 123 (204)
T TIGR01182 57 VPDALIGAGTVLN--PEQLRQAVDAGAQFIVSPGLTPELAKHAQDHGIPIIPGVATPSE-----------IMLALELGIT 123 (204)
T ss_pred CCCCEEEEEeCCC--HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCcEECCCCCHHH-----------HHHHHHCCCC
Confidence 4578999999976 56688899988 4445555543 55555 457888988888764 3467788885
Q ss_pred eEEEEEEecCCCCCCCc---hHHHHHHHHHHH----------------HHHhcCCCCceEEEEeeccccc--ccCCCCCh
Q 011613 83 RIRLHILTDGRDVLDGS---SVGFVETIEKDL----------------AELRGKGVDAQIASGGGRMYVT--MDRYENDW 141 (481)
Q Consensus 83 ~v~iH~~~DGrD~~p~s---~~~~~~~l~~~~----------------~~~~~~~~~~~iasv~GR~y~a--MDr~d~rw 141 (481)
.|=+| |-+ |..|++.|..-+ .++-+.| -++-++|..-+- .=. .++|
T Consensus 124 --~vKlF-------PA~~~GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aG---a~~vg~Gs~L~~~~~~~-~~~~ 190 (204)
T TIGR01182 124 --ALKLF-------PAEVSGGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAAP---NVACGGGSWLVPKDLIA-AGDW 190 (204)
T ss_pred --EEEEC-------CchhcCCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCC---CEEEEEChhhcCchhhc-cccH
Confidence 24445 322 477887665222 2221113 466667776411 112 4688
Q ss_pred HHHHHHHHH
Q 011613 142 DVVKRGWDA 150 (481)
Q Consensus 142 ~r~~~ay~~ 150 (481)
+.+++.-+.
T Consensus 191 ~~i~~~a~~ 199 (204)
T TIGR01182 191 DEITRLARE 199 (204)
T ss_pred HHHHHHHHH
Confidence 877764443
No 94
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=30.03 E-value=2.4e+02 Score=25.67 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=39.4
Q ss_pred hhHHhhhhhc-cC-CceEEEEeecCCCcccc------HHhHHHH---HHHHHHcCCCeEEEEEEecCCCCCCCchHHHHH
Q 011613 37 EGFNYIKPSF-ET-GTLHLIGLLSDGGVHSR------LDQLQLL---LKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 105 (481)
Q Consensus 37 ~~~~~~~~~~-~~-~~lHl~GL~SdggvHsh------~~hl~~l---~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~ 105 (481)
+++..+.+.+ +. ..--++=|+|||--+.- +..+... ++.|++.|+ .+|++.=|.|..| .=.++++
T Consensus 88 ~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi---~v~~igig~~~~~-~~~~~~~ 163 (174)
T cd01454 88 AAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGI---EVFGITIDRDATT-VDKEYLK 163 (174)
T ss_pred HHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCc---EEEEEEecCcccc-chHHHHH
Confidence 3444444544 22 24456889999987742 1123233 555667776 5888888888877 4445555
Q ss_pred HH
Q 011613 106 TI 107 (481)
Q Consensus 106 ~l 107 (481)
++
T Consensus 164 ~~ 165 (174)
T cd01454 164 NI 165 (174)
T ss_pred Hh
Confidence 44
No 95
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=29.52 E-value=1.4e+02 Score=25.28 Aligned_cols=77 Identities=17% Similarity=0.315 Sum_probs=53.6
Q ss_pred eEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEEec--------CCC---CCCCchHHHHHHHHHHHHHHhcCCC
Q 011613 51 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTD--------GRD---VLDGSSVGFVETIEKDLAELRGKGV 119 (481)
Q Consensus 51 lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~D--------GrD---~~p~s~~~~~~~l~~~~~~~~~~~~ 119 (481)
.+++ |+--+|+=|++ =...+-+.|+++|++ +-|.+..= .-| +.|+-+- .++++++.++.. |+
T Consensus 4 ~~IL-l~C~~G~sSS~-l~~k~~~~~~~~gi~-~~v~a~~~~~~~~~~~~~Dvill~pqi~~-~~~~i~~~~~~~---~i 76 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSL-LVNKMNKAAEEYGVP-VKIAAGSYGAAGEKLDDADVVLLAPQVAY-MLPDLKKETDKK---GI 76 (95)
T ss_pred cEEE-EECCCchhHHH-HHHHHHHHHHHCCCc-EEEEEecHHHHHhhcCCCCEEEECchHHH-HHHHHHHHhhhc---CC
Confidence 3455 55556677887 558889999999995 66666652 223 2455443 677777776665 66
Q ss_pred CceEEEEeecccccccC
Q 011613 120 DAQIASGGGRMYVTMDR 136 (481)
Q Consensus 120 ~~~iasv~GR~y~aMDr 136 (481)
+++++-.+.|-.||-
T Consensus 77 --pv~~I~~~~Y~~mdg 91 (95)
T TIGR00853 77 --PVEVINGAQYGKLTG 91 (95)
T ss_pred --CEEEeChhhcccCCc
Confidence 899999999977775
No 96
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=29.51 E-value=1.5e+02 Score=26.98 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=12.7
Q ss_pred eEEEEEEecCCCCCCCc
Q 011613 83 RIRLHILTDGRDVLDGS 99 (481)
Q Consensus 83 ~v~iH~~~DGrD~~p~s 99 (481)
+-.|-+||||.++....
T Consensus 104 ~~~iiliTDG~~~~~~~ 120 (174)
T cd01454 104 RKILLVISDGEPNDLDY 120 (174)
T ss_pred CcEEEEEeCCCcCcccc
Confidence 33588999999886643
No 97
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.69 E-value=93 Score=31.25 Aligned_cols=41 Identities=22% Similarity=0.210 Sum_probs=32.4
Q ss_pred HHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHH
Q 011613 73 LKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 114 (481)
Q Consensus 73 ~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~ 114 (481)
-++|++-||+.+.=|.|+|+-|+ +.+-.+-++.++..-++.
T Consensus 166 ~~iAk~~gVp~~~rdvfLD~e~~-~~~V~kql~~~~~~Ark~ 206 (250)
T COG2861 166 GKIAKEIGVPVIKRDVFLDDEDT-EAAVLKQLDAAEKLARKN 206 (250)
T ss_pred hhhHhhcCCceeeeeeeecCcCC-HHHHHHHHHHHHHHHHhc
Confidence 46788999999999999999999 666666677776654443
No 98
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.42 E-value=1e+02 Score=26.50 Aligned_cols=51 Identities=25% Similarity=0.364 Sum_probs=31.6
Q ss_pred CCCCCCccCHHHHHHHHHcCCCCCCCC------CCCEee---ecCC----CCccccccCCCEEEEe
Q 011613 154 GEAPHKFKSAVEAVKKLREQPNANDQY------LPPFVI---VDEN----GKAVGPIVDGDAVVTF 206 (481)
Q Consensus 154 g~~~~~~~~~~~~i~~~y~~~~~~Def------i~p~~~---~~~~----~~~~~~i~~gD~vi~~ 206 (481)
++++.+-.|.+.||.+.|.+. -|++ |.|-+| ++.+ ++.-..+++||.|+|.
T Consensus 32 ~e~~~tvgdll~yi~~~~ie~--r~~lFi~~gsvrpGii~lINd~DWEllekedy~ledgD~ivfi 95 (101)
T KOG4146|consen 32 GESPATVGDLLDYIFGKYIET--RDSLFIHHGSVRPGIIVLINDMDWELLEKEDYPLEDGDHIVFI 95 (101)
T ss_pred CCCcccHHHHHHHHHHHHhcC--CcceEeeCCcCcCcEEEEEeccchhhhcccccCcccCCEEEEE
Confidence 444445677889999989762 2333 566544 3311 2223568999999986
No 99
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=26.67 E-value=4.5e+02 Score=29.78 Aligned_cols=94 Identities=17% Similarity=0.316 Sum_probs=50.9
Q ss_pred CchhHHhhhhhc-c----CCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHH
Q 011613 35 QDEGFNYIKPSF-E----TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEK 109 (481)
Q Consensus 35 ~~~~~~~~~~~~-~----~~~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~ 109 (481)
-..+|..+.+.+ . .+...++=|+|||--++- +.....++.+++.|++ |++=.+.+|-| ..+++.|
T Consensus 129 ig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~-~dvleaAq~LR~~GVe-I~vIGVG~g~n------~e~LrlI-- 198 (576)
T PTZ00441 129 MTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSK-YRALEESRKLKDRNVK-LAVIGIGQGIN------HQFNRLL-- 198 (576)
T ss_pred HHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCc-ccHHHHHHHHHHCCCE-EEEEEeCCCcC------HHHHHHH--
Confidence 334555544444 2 135688899999986554 3344456778889994 54444444333 2223322
Q ss_pred HHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHH
Q 011613 110 DLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQV 152 (481)
Q Consensus 110 ~~~~~~~~~~~~~iasv~GR~y~aMDr~d~rw~r~~~ay~~~~ 152 (481)
+ |+ +...-.|||| - ..+|+-++..-+.|.
T Consensus 199 --A-----gC--~p~~g~c~~Y----~-vadf~eL~~ivk~Li 227 (576)
T PTZ00441 199 --A-----GC--RPREGKCKFY----S-DADWEEAKNLIKPFI 227 (576)
T ss_pred --h-----cc--CCCCCCCceE----E-eCCHHHHHHHHHHHH
Confidence 1 22 1222347898 2 456876666555554
No 100
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=26.50 E-value=43 Score=31.30 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHh-cCcEEEEecCCC
Q 011613 369 KAADEAVKIIIDAIEK-VGGIYLVTADHG 396 (481)
Q Consensus 369 e~vD~~lGrLl~al~~-~gt~vIITSDHG 396 (481)
+.-|..|.+++..+.. ...+.|+||||.
T Consensus 77 ~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~ 105 (166)
T PF05991_consen 77 ETADDYIERLVRELKNRPRQVTVVTSDRE 105 (166)
T ss_pred CCHHHHHHHHHHHhccCCCeEEEEeCCHH
Confidence 5779999999999887 347999999997
No 101
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=26.49 E-value=3.7e+02 Score=25.69 Aligned_cols=65 Identities=6% Similarity=0.029 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEec
Q 011613 324 MKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTA 393 (481)
Q Consensus 324 msa~~vtd~ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITS 393 (481)
.+..++.+.+.++.++.++++|++++-..=..+.... .. -+.++..+.+|-..+++.|..++++|
T Consensus 106 ~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~-~~----~~~~~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 106 LTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKG-NR----QQEVAEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCC-CH----HHHHHHHHHHHHHHHHHhCCeEEEec
Confidence 3556677777777777789999999754211222111 11 13455566666666778887777776
No 102
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=26.47 E-value=81 Score=34.14 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.4
Q ss_pred CCceEEEEeecCCCccccHH
Q 011613 48 TGTLHLIGLLSDGGVHSRLD 67 (481)
Q Consensus 48 ~~~lHl~GL~SdggvHsh~~ 67 (481)
+++-||+=+.+|++-|.=-|
T Consensus 227 ~~a~rllv~~TDa~fH~AGD 246 (423)
T smart00187 227 EDARRLLVFSTDAGFHFAGD 246 (423)
T ss_pred CCceEEEEEEcCCCccccCC
Confidence 35889999999999995444
No 103
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.35 E-value=2.1e+02 Score=28.26 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=59.6
Q ss_pred hcCCCCCchhHHhhhhhc-cCC--ceEEEEeecCCCcccc-------HHhHHHHHHHHHHcCCCeEEEEEEecC--CCC-
Q 011613 29 ASGKIYQDEGFNYIKPSF-ETG--TLHLIGLLSDGGVHSR-------LDQLQLLLKGASERGAKRIRLHILTDG--RDV- 95 (481)
Q Consensus 29 ~~g~~~~~~~~~~~~~~~-~~~--~lHl~GL~SdggvHsh-------~~hl~~l~~~a~~~g~~~v~iH~~~DG--rD~- 95 (481)
-+..|.++..|.+.++.+ +.| .+-|- +++ -|++ ...+.++.+++++.|++=+.+.....+ .-.
T Consensus 8 ~~~~~~~~~~~~e~l~~~~~~G~~~VEl~--~~~--~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~ 83 (279)
T TIGR00542 8 YEKALPKGECWLERLQLAKTCGFDFVEMS--VDE--TDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGS 83 (279)
T ss_pred ehhhCCCCCCHHHHHHHHHHcCCCEEEEe--cCC--ccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCC
Confidence 345566677788888777 434 66662 222 2332 445778888999999963334321111 011
Q ss_pred -CCC---chHHHHHHHHHHHHHHhcCCCCceEEEEeec-ccccccCCCCChHHHHHHHHHHH
Q 011613 96 -LDG---SSVGFVETIEKDLAELRGKGVDAQIASGGGR-MYVTMDRYENDWDVVKRGWDAQV 152 (481)
Q Consensus 96 -~p~---s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR-~y~aMDr~d~rw~r~~~ay~~~~ 152 (481)
.|. -++.++++..+.++.+ |+ +...+.|+ ++-..+. ...|+++.+.++.++
T Consensus 84 ~~~~~r~~~~~~~~~~i~~a~~l---G~--~~v~~~~~~~~~~~~~-~~~~~~~~~~l~~l~ 139 (279)
T TIGR00542 84 KDKAVRQQGLEIMEKAIQLARDL---GI--RTIQLAGYDVYYEEHD-EETRRRFREGLKEAV 139 (279)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHh---CC--CEEEecCcccccCcCC-HHHHHHHHHHHHHHH
Confidence 122 2345555555555665 76 34455554 2202233 445666655555443
No 104
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=25.95 E-value=3.4e+02 Score=27.08 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=53.1
Q ss_pred CCchhHHhhhhhccCCceEEEEeecCCCcccc-----------HHhHHHHHHHHHHcCCCeEEEEEEecCCC--------
Q 011613 34 YQDEGFNYIKPSFETGTLHLIGLLSDGGVHSR-----------LDQLQLLLKGASERGAKRIRLHILTDGRD-------- 94 (481)
Q Consensus 34 ~~~~~~~~~~~~~~~~~lHl~GL~SdggvHsh-----------~~hl~~l~~~a~~~g~~~v~iH~~~DGrD-------- 94 (481)
..+..++++++++++|. ++++++|...... ..-......+|.+.|++=|.+++.-++.-
T Consensus 176 ~~~~~~~~~~~~Lk~g~--~v~~l~Dq~~~~~~~~~v~FfG~~a~~~~g~a~lA~~~~apvvp~~~~r~~~~~~~~~~i~ 253 (295)
T PF03279_consen 176 PKGEGIRELIRALKEGG--IVGLLGDQDPGKKDGVFVPFFGRPASTPTGPARLARKTGAPVVPVFAYREPDGSHYRIEIE 253 (295)
T ss_pred cchhhHHHHHHHhccCC--EEEEEECCCCCCCCceEEeECCeecccccHHHHHHHHhCCcEEEEEEEEeCCCCEEEEEEe
Confidence 34445777888775444 9999999765443 22345778899999998888888776554
Q ss_pred ----CCCC-----chHHHHHHHHHHHHHHh
Q 011613 95 ----VLDG-----SSVGFVETIEKDLAELR 115 (481)
Q Consensus 95 ----~~p~-----s~~~~~~~l~~~~~~~~ 115 (481)
.++. ....|.+.||+.+.+.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~lE~~Ir~~P 283 (295)
T PF03279_consen 254 PPLDFPSSEDIEELTQRYNDRLEEWIREHP 283 (295)
T ss_pred ecccCCccchHHHHHHHHHHHHHHHHHcCh
Confidence 1222 34556666777776653
No 105
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.73 E-value=2e+02 Score=28.46 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.8
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEE
Q 011613 65 RLDQLQLLLKGASERGAKRIRLH 87 (481)
Q Consensus 65 h~~hl~~l~~~a~~~g~~~v~iH 87 (481)
.++++...+++|++.|++.|.++
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~ 114 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLA 114 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEec
Confidence 46789999999999999877665
No 106
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=25.65 E-value=2.1e+02 Score=29.52 Aligned_cols=68 Identities=19% Similarity=0.187 Sum_probs=41.4
Q ss_pred hhhhhc-cCC-ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEEecC-----CCCCCCchHHHHHHHHH
Q 011613 41 YIKPSF-ETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDG-----RDVLDGSSVGFVETIEK 109 (481)
Q Consensus 41 ~~~~~~-~~~-~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~DG-----rD~~p~s~~~~~~~l~~ 109 (481)
++++.+ +.| .+-..-.+..| |--..+.+..|++.+.+.|+...|+|.+..- .++++..+.+.++++.+
T Consensus 218 ~ai~~L~~~Gi~v~~q~vLl~g-vNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~ 292 (321)
T TIGR03822 218 AACARLIDAGIPMVSQSVLLRG-VNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRG 292 (321)
T ss_pred HHHHHHHHcCCEEEEEeeEeCC-CCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHH
Confidence 334444 335 45554555544 6667888888888888888888888887432 12444455555554433
No 107
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=25.10 E-value=70 Score=35.70 Aligned_cols=42 Identities=33% Similarity=0.576 Sum_probs=34.5
Q ss_pred ceEEEE--eecCCCccc---------------------cHHhHHHHHHHHHHcCCCeEEEEEEecC
Q 011613 50 TLHLIG--LLSDGGVHS---------------------RLDQLQLLLKGASERGAKRIRLHILTDG 92 (481)
Q Consensus 50 ~lHl~G--L~SdggvHs---------------------h~~hl~~l~~~a~~~g~~~v~iH~~~DG 92 (481)
.+.+.| ++.||+..+ ..+.|..+++.|.++|+ +|.||+|.|+
T Consensus 281 ~~~~g~~K~f~Dgslg~rtA~l~~~y~d~~~~~G~~l~~~e~l~~~v~~a~~~gl-~v~vHAiGD~ 345 (535)
T COG1574 281 LLQGGGVKLFADGSLGERTALLAAPYADGPGPSGELLLTEEELEELVRAADERGL-PVAVHAIGDG 345 (535)
T ss_pred eeecCceEEEEeCCCCcchhhccCcccCCCCCCCCcccCHHHHHHHHHHHHHCCC-cEEEEEechH
Confidence 666667 777776654 45789999999999999 6999999996
No 108
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=25.07 E-value=93 Score=31.53 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=31.2
Q ss_pred eEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEEecC
Q 011613 51 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDG 92 (481)
Q Consensus 51 lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~DG 92 (481)
-.++=|+|||.-|-|-.-...+++.|+++|+.- +=.+.|.
T Consensus 165 ~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l--~~I~ld~ 204 (266)
T cd01460 165 WQLLLIISDGRGEFSEGAQKVRLREAREQNVFV--VFIIIDN 204 (266)
T ss_pred ccEEEEEECCCcccCccHHHHHHHHHHHcCCeE--EEEEEcC
Confidence 389999999998888777777799999999842 3345555
No 109
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=24.69 E-value=1.6e+02 Score=22.76 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=30.8
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEEe
Q 011613 50 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILT 90 (481)
Q Consensus 50 ~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~ 90 (481)
.++.+++-..+|.- .-+.|.+|.++|++.|.. .||+=+
T Consensus 8 g~~~v~~~~~~G~i-~~~~l~~la~ia~~yg~~--~irlT~ 45 (69)
T PF03460_consen 8 GFYMVRIRIPGGRI-SAEQLRALAEIAEKYGDG--EIRLTT 45 (69)
T ss_dssp TEEEEEEB-GGGEE-EHHHHHHHHHHHHHHSTS--EEEEET
T ss_pred eEEEEEEeCCCEEE-CHHHHHHHHHHHHHhCCC--eEEECC
Confidence 68999999999999 778999999999999975 344433
No 110
>COG2028 Uncharacterized conserved protein [Function unknown]
Probab=24.31 E-value=93 Score=27.96 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=37.1
Q ss_pred CccCHHHHHHHHHcCCCCCCCCCCCEeeecCCCCccccccCCCEEEEeecCcch
Q 011613 159 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADR 212 (481)
Q Consensus 159 ~~~~~~~~i~~~y~~~~~~Defi~p~~~~~~~~~~~~~i~~gD~vi~~NfR~DR 212 (481)
+|+=|.+.++..+..| .|-|++|+-+ .+++|=-|||+-.|-|.
T Consensus 8 tfpvp~efldrifkeg--k~vfvkpatl---------~vepgMKviFYaSredq 50 (145)
T COG2028 8 TFPVPKEFLDRIFKEG--KDVFVKPATL---------WVEPGMKVIFYASREDQ 50 (145)
T ss_pred ecCCcHHHHHHHHhcC--CceEeecceE---------EecCCcEEEEEEecccC
Confidence 5777899999999885 6999999987 47889999999998875
No 111
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=24.01 E-value=2.2e+02 Score=30.42 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=26.0
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEEecCCCCCCC
Q 011613 65 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLDG 98 (481)
Q Consensus 65 h~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~ 98 (481)
-|+|++..+++|++.|.+.| .-.+-||.+-+++
T Consensus 114 AIe~~k~~idiA~eLGa~~I-~iW~~DG~~~~g~ 146 (378)
T TIGR02635 114 AIDHLLECVDIAKKTGSKDI-SLWLADGTNYPGQ 146 (378)
T ss_pred HHHHHHHHHHHHHHhCCCeE-EEecCCcCcCCcc
Confidence 37899999999999999743 3334599998883
No 112
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.78 E-value=2.6e+02 Score=27.93 Aligned_cols=59 Identities=20% Similarity=0.210 Sum_probs=40.3
Q ss_pred HHhHHHHHHHHHHcCCCeEEEEEEecCCCCCCCc--------hHHHHHHHHHHHHHHhcCCCCceEEEEeecc
Q 011613 66 LDQLQLLLKGASERGAKRIRLHILTDGRDVLDGS--------SVGFVETIEKDLAELRGKGVDAQIASGGGRM 130 (481)
Q Consensus 66 ~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~s--------~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~ 130 (481)
.+.+..++++|.+.||+.|-|=+|+=.-=-.|+. ...++++..+.+.+. |+ +| .++|+-
T Consensus 44 ~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~~~l~~~~~~~~~~---~i--ri-~~iG~~ 110 (243)
T PRK14829 44 EPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVIHRRREQMDEW---GV--RV-RWSGRR 110 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHHHHHHHHHHHHHHc---Cc--EE-EEEech
Confidence 4668889999999999999999996555567766 445555544444443 55 55 345553
No 113
>PRK06886 hypothetical protein; Validated
Probab=23.69 E-value=8.4e+02 Score=25.35 Aligned_cols=74 Identities=14% Similarity=0.129 Sum_probs=44.5
Q ss_pred HHhHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHH
Q 011613 66 LDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVK 145 (481)
Q Consensus 66 ~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDr~d~rw~r~~ 145 (481)
.+|+..++++|++.|+. |-+|+- -.+.+.. ..++.+.+...+. |..++ .+++=-. +|+- ...+...
T Consensus 161 ~e~l~~~~~lA~~~g~~-Id~Hld--e~~~~~~---~~le~l~~~~~~~---Gl~gr--V~~sH~~-~L~~--~~~~~~~ 226 (329)
T PRK06886 161 LEAMDILLDTAKSLGKM-VHVHVD--QFNTPKE---KETEQLCDKTIEH---GMQGR--VVAIHGI-SIGA--HSKEYRY 226 (329)
T ss_pred HHHHHHHHHHHHHcCCC-eEEeEC--CCCchhH---HHHHHHHHHHHHc---CCCCC--EEEEEec-cccC--cChhhHH
Confidence 57899999999999984 667764 3333332 3355554444454 66556 3445555 6663 3334455
Q ss_pred HHHHHHHh
Q 011613 146 RGWDAQVL 153 (481)
Q Consensus 146 ~ay~~~~~ 153 (481)
+.++.|..
T Consensus 227 ~~i~~La~ 234 (329)
T PRK06886 227 RLYQKMRE 234 (329)
T ss_pred HHHHHHHH
Confidence 66666664
No 114
>PRK01060 endonuclease IV; Provisional
Probab=23.64 E-value=2.9e+02 Score=27.17 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.5
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEE
Q 011613 65 RLDQLQLLLKGASERGAKRIRLHI 88 (481)
Q Consensus 65 h~~hl~~l~~~a~~~g~~~v~iH~ 88 (481)
.++.+...+++|++.|++.|.+|.
T Consensus 87 s~~~~~~~i~~A~~lga~~vv~h~ 110 (281)
T PRK01060 87 SRDFLIQEIERCAALGAKLLVFHP 110 (281)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcC
Confidence 367899999999999999999995
No 115
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.45 E-value=76 Score=31.43 Aligned_cols=67 Identities=19% Similarity=0.336 Sum_probs=44.0
Q ss_pred CchhHHhhhhhc-cCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHH
Q 011613 35 QDEGFNYIKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEK 109 (481)
Q Consensus 35 ~~~~~~~~~~~~-~~~~lHl~GL~SdggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~ 109 (481)
..+.++.+.+++ +.+ |-|=--||+ ..||+..|++.|.+.||++|.=|.++.=-| +.+|..-.+++.+
T Consensus 162 ~leE~~avA~aca~~g----~~lEPTGGI--dl~Nf~~I~~i~ldaGv~kviPHIYssiID--k~tG~TrpedV~~ 229 (236)
T TIGR03581 162 HLEEYAAVAKACAKHG----FYLEPTGGI--DLDNFEEIVQIALDAGVEKVIPHVYSSIID--KETGNTRVEDVKQ 229 (236)
T ss_pred cHHHHHHHHHHHHHcC----CccCCCCCc--cHHhHHHHHHHHHHcCCCeeccccceeccc--cccCCCCHHHHHH
Confidence 345555555655 444 224556787 789999999999999999998999875443 3444444444433
No 116
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=23.32 E-value=1.5e+02 Score=26.27 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=43.3
Q ss_pred hhhhhc--cCCceEEE-EeecC-CCccccHHhHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHH
Q 011613 41 YIKPSF--ETGTLHLI-GLLSD-GGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEK 109 (481)
Q Consensus 41 ~~~~~~--~~~~lHl~-GL~Sd-ggvHsh~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~ 109 (481)
.+++.. .+|.-|.+ |++|+ -|+.-..-++..|.+.+++.++++|.+ |+ .-++.=..-..||.++.+
T Consensus 13 ~~iE~~~~y~G~Y~VL~G~ispl~gi~p~~l~i~~L~~ri~~~~i~EVIl-A~--~pt~EGe~Ta~yi~~~l~ 82 (112)
T cd01025 13 LAIEESGEYRGLYHVLGGLISPLDGIGPDDLNIDKLLERIAKGQVKEVIL-AT--NPTVEGEATALYIAKLLK 82 (112)
T ss_pred HHHHhhCccceEEEEeCCCcCCCCCCCccccCHHHHHHHHhcCCCcEEEE-ec--CCCchHHHHHHHHHHHHh
Confidence 344444 25777766 67776 456555668889999999999988843 33 334444556678877754
No 117
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=23.23 E-value=1.4e+02 Score=29.29 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.4
Q ss_pred ccHHhHHHHHHHHHHcCCCeEEEEE
Q 011613 64 SRLDQLQLLLKGASERGAKRIRLHI 88 (481)
Q Consensus 64 sh~~hl~~l~~~a~~~g~~~v~iH~ 88 (481)
..++++...+++|++.|++.|.+|.
T Consensus 81 ~~~~~l~~~i~~A~~lGa~~vv~h~ 105 (273)
T smart00518 81 KSIERLIDEIKRCEELGIKALVFHP 105 (273)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 4578999999999999999999987
No 118
>PRK04280 arginine repressor; Provisional
Probab=23.09 E-value=5.6e+02 Score=23.56 Aligned_cols=113 Identities=15% Similarity=0.208 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecc-cccc-cC-CCCChHHHHHH
Q 011613 71 LLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRM-YVTM-DR-YENDWDVVKRG 147 (481)
Q Consensus 71 ~l~~~a~~~g~~~v~iH~~~DGrD~~p~s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~-y~aM-Dr-~d~rw~r~~~a 147 (481)
.|++.++++|++ | + -..+...|+++ |. .|+.+-.|+| | ++ .- ..+.++|.+++
T Consensus 23 eL~~~L~~~Gi~-v-------------T-----QATiSRDikeL---~l-vKv~~~~G~~~Y-~lp~~~~~~~~~~l~~~ 78 (148)
T PRK04280 23 ELVDRLREEGFN-V-------------T-----QATVSRDIKEL---HL-VKVPLPDGRYKY-SLPADQRFNPLQKLKRA 78 (148)
T ss_pred HHHHHHHHcCCC-e-------------e-----hHHHHHHHHHc---CC-EEeecCCCcEEE-eeccccccchHHHHHHH
Confidence 356667788984 4 1 12455566777 66 3888888986 7 44 21 02345677777
Q ss_pred HHHHHhCC-C-C-----CCccCHHHHHHHHHcCCCCCCCCCCCEeeecCCCCccccccCCCEEEEeecCcchHHHHHHhc
Q 011613 148 WDAQVLGE-A-P-----HKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKAL 220 (481)
Q Consensus 148 y~~~~~g~-~-~-----~~~~~~~~~i~~~y~~~~~~Defi~p~~~~~~~~~~~~~i~~gD~vi~~NfR~DR~rqi~~a~ 220 (481)
+.-.+... . . .+.+-...+|...-++- =.|-++ |+|...|+|+.+-=-.+.+.++.+.|
T Consensus 79 ~~~~v~sv~~~~~~vvikT~pG~A~~va~~iD~~------~~~eI~--------GTIAGdDTilvi~~~~~~a~~l~~~l 144 (148)
T PRK04280 79 LMDSFVKIDGAGNLLVLKTLPGNANSIGALIDNL------DWDEIL--------GTICGDDTCLIICRTEEDAEEVKDRF 144 (148)
T ss_pred HHHHEEEEeeeCCEEEEEcCCChHHHHHHHHHhC------CCCCeE--------EEEecCCEEEEEECCHHHHHHHHHHH
Confidence 66544321 0 0 11233445555554431 123344 67889999998888888888877665
Q ss_pred c
Q 011613 221 E 221 (481)
Q Consensus 221 ~ 221 (481)
.
T Consensus 145 ~ 145 (148)
T PRK04280 145 L 145 (148)
T ss_pred H
Confidence 3
No 119
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=23.07 E-value=4.7e+02 Score=25.31 Aligned_cols=15 Identities=20% Similarity=0.342 Sum_probs=6.8
Q ss_pred HhHHHHHHHHHHcCC
Q 011613 67 DQLQLLLKGASERGA 81 (481)
Q Consensus 67 ~hl~~l~~~a~~~g~ 81 (481)
+.+...++.|++.|+
T Consensus 115 ~~~~~~i~~a~~~G~ 129 (265)
T cd03174 115 ENAEEAIEAAKEAGL 129 (265)
T ss_pred HHHHHHHHHHHHCCC
Confidence 334444444444444
No 120
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=22.69 E-value=3.2e+02 Score=26.92 Aligned_cols=83 Identities=10% Similarity=0.065 Sum_probs=46.6
Q ss_pred HHhHHHHHHHHHHc-CCCeEEEEEEecCCCCCCC--chHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChH
Q 011613 66 LDQLQLLLKGASER-GAKRIRLHILTDGRDVLDG--SSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWD 142 (481)
Q Consensus 66 ~~hl~~l~~~a~~~-g~~~v~iH~~~DGrD~~p~--s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDr~d~rw~ 142 (481)
-+-+..+.++++++ ++ .+.+|+-.++.-..|. --...++.+...++-..+.|+. .|....|++- .-++ +..|+
T Consensus 44 ~~~~~~l~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~-~v~~~~g~~~-~~~~-~~~~~ 119 (279)
T cd00019 44 KERAEKFKAIAEEGPSI-CLSVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIR-LLVFHPGSYL-GQSK-EEGLK 119 (279)
T ss_pred HHHHHHHHHHHHHcCCC-cEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCC-EEEECCCCCC-CCCH-HHHHH
Confidence 36788888888888 55 5888876655444443 2333444444444433333763 4454466543 3234 55666
Q ss_pred HHHHHHHHHH
Q 011613 143 VVKRGWDAQV 152 (481)
Q Consensus 143 r~~~ay~~~~ 152 (481)
++.+.++.++
T Consensus 120 ~~~~~l~~l~ 129 (279)
T cd00019 120 RVIEALNELI 129 (279)
T ss_pred HHHHHHHHHH
Confidence 6666555555
No 121
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=22.59 E-value=2.4e+02 Score=28.21 Aligned_cols=103 Identities=20% Similarity=0.358 Sum_probs=69.1
Q ss_pred ccccchhHHHHHHhcC---CCCCchhHHhhhhhccCCceEEE-----EeecCCC--ccccHHhHHHHHHHHHHcCCCeEE
Q 011613 16 IFAQGAKLVDLALASG---KIYQDEGFNYIKPSFETGTLHLI-----GLLSDGG--VHSRLDQLQLLLKGASERGAKRIR 85 (481)
Q Consensus 16 vv~q~~~ri~~~i~~g---~~~~~~~~~~~~~~~~~~~lHl~-----GL~Sdgg--vHsh~~hl~~l~~~a~~~g~~~v~ 85 (481)
|-.+|+.++.+.++.. ++.-.+.+.++...++...+=|+ -+-|+|| |.++.++|..+++.+++.|+ .
T Consensus 49 I~d~Dv~~L~~~~~~~lNlE~a~t~em~~ia~~~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI---~ 125 (234)
T cd00003 49 IQDRDVRLLRELVRTELNLEMAPTEEMLEIALEVKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGI---R 125 (234)
T ss_pred CCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCC---E
Confidence 4578888998888632 45556666665544433333333 4568999 67799999999999999998 3
Q ss_pred EEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccC
Q 011613 86 LHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDR 136 (481)
Q Consensus 86 iH~~~DGrD~~p~s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDr 136 (481)
|=+|.| |. .++++.. ++. |.. +|=-=.|.|--+++.
T Consensus 126 VSLFiD-----Pd-----~~qi~~A-~~~---GAd-~VELhTG~Ya~a~~~ 161 (234)
T cd00003 126 VSLFID-----PD-----PEQIEAA-KEV---GAD-RVELHTGPYANAYDK 161 (234)
T ss_pred EEEEeC-----CC-----HHHHHHH-HHh---CcC-EEEEechhhhcCCCc
Confidence 667876 22 3555543 344 654 676678999546654
No 122
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.20 E-value=1.8e+02 Score=28.55 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=21.1
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEE
Q 011613 65 RLDQLQLLLKGASERGAKRIRLHIL 89 (481)
Q Consensus 65 h~~hl~~l~~~a~~~g~~~v~iH~~ 89 (481)
.++++..++++|++.|++.|.++.+
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~~ 116 (284)
T PRK13210 92 ALEIMKKAIRLAQDLGIRTIQLAGY 116 (284)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCc
Confidence 4688999999999999998877643
No 123
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=21.96 E-value=2.5e+02 Score=28.19 Aligned_cols=98 Identities=24% Similarity=0.380 Sum_probs=64.6
Q ss_pred ccccchhHHHHHHhcC---CCCCchhHHhhhhhccCCceEEE-----EeecCCC--ccccHHhHHHHHHHHHHcCCCeEE
Q 011613 16 IFAQGAKLVDLALASG---KIYQDEGFNYIKPSFETGTLHLI-----GLLSDGG--VHSRLDQLQLLLKGASERGAKRIR 85 (481)
Q Consensus 16 vv~q~~~ri~~~i~~g---~~~~~~~~~~~~~~~~~~~lHl~-----GL~Sdgg--vHsh~~hl~~l~~~a~~~g~~~v~ 85 (481)
|-.+|+.+|.+.++.. ++.-++.+.++...++...+=|+ .+-|+|| |.+|.++|..+++.+++.|+ .
T Consensus 52 I~d~Dv~~L~~~~~~~lNlE~a~~~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gI---r 128 (239)
T PRK05265 52 IRDRDVRLLRETLKTELNLEMAATEEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGI---R 128 (239)
T ss_pred CCHHHHHHHHHhcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCC---E
Confidence 4567888998888632 44555666665544433333333 4568999 56699999999999999997 4
Q ss_pred EEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccc
Q 011613 86 LHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMY 131 (481)
Q Consensus 86 iH~~~DGrD~~p~s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~y 131 (481)
|=+|.| |. .++++.. +++ |.. +|=-=.|.|-
T Consensus 129 VSLFid-----P~-----~~qi~~A-~~~---GAd-~VELhTG~yA 159 (239)
T PRK05265 129 VSLFID-----PD-----PEQIEAA-AEV---GAD-RIELHTGPYA 159 (239)
T ss_pred EEEEeC-----CC-----HHHHHHH-HHh---CcC-EEEEechhhh
Confidence 667775 32 3455442 344 654 6666678885
No 124
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.67 E-value=3.3e+02 Score=24.92 Aligned_cols=62 Identities=11% Similarity=-0.014 Sum_probs=36.2
Q ss_pred HHHHHHhCCCcEEEEeCCCCccCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHhcCcEEEEecC
Q 011613 333 AKKAILSRRFHQVRVNLPNSDMVGHTGDIE----ATVVACKAADEAVKIIIDAIEKVGGIYLVTAD 394 (481)
Q Consensus 333 ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~----a~~~aIe~vD~~lGrLl~al~~~gt~vIITSD 394 (481)
+.+.+...+||.+++.+..=|......... ...+-.+.+.+.+..+++.+++.+..||+.+.
T Consensus 51 ~~~~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili~~ 116 (200)
T cd01829 51 LKELIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWVGL 116 (200)
T ss_pred HHHHHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 344456678999999987666432211100 00111345556778888888876766666654
No 125
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=21.53 E-value=6.1e+02 Score=25.83 Aligned_cols=112 Identities=14% Similarity=0.058 Sum_probs=65.9
Q ss_pred CCCchhhhcccCC-cc---cccc--chhHHHHHHhcC------CCC-CchhHHhhhhhccCCceEEEEeecCCCccc-c-
Q 011613 1 MGNSEVGHNALGA-GR---IFAQ--GAKLVDLALASG------KIY-QDEGFNYIKPSFETGTLHLIGLLSDGGVHS-R- 65 (481)
Q Consensus 1 mGnSEvGH~~iGa-Gr---vv~q--~~~ri~~~i~~g------~~~-~~~~~~~~~~~~~~~~lHl~GL~SdggvHs-h- 65 (481)
.||.|.+-.-+++ |. +||+ ....|+.-+.+. .+. +...++.+++++++| +++|+++|--... +
T Consensus 140 ~gnwE~~~~~~~~~~~~~~~vyr~~~n~~~d~~~~~~R~~~g~~~i~~~~~~r~i~kaLk~g--~~v~il~Dq~~~~~~g 217 (314)
T PRK08943 140 GWAIDIPAMLLASQGQPMAAMFHNQRNPLFDWLWNRVRRRFGGRLHAREDGIKPFISSVRQG--YWGYYLPDEDHGPEHS 217 (314)
T ss_pred hhHHHHHHHHHHhcCCCccEEEeCCCCHHHHHHHHHHHhhcCCeeecCchhHHHHHHHHhCC--CeEEEeCCCCCCCCCC
Confidence 4788876655543 22 3443 345666654322 344 333577788887444 4889999876531 1
Q ss_pred ---------HHhHHHHHHHHHHcCCCeEEEEEEe--cCC-------C---CCC-----CchHHHHHHHHHHHHHH
Q 011613 66 ---------LDQLQLLLKGASERGAKRIRLHILT--DGR-------D---VLD-----GSSVGFVETIEKDLAEL 114 (481)
Q Consensus 66 ---------~~hl~~l~~~a~~~g~~~v~iH~~~--DGr-------D---~~p-----~s~~~~~~~l~~~~~~~ 114 (481)
--.......+|.+.|++=|.+++.- ||. + .+| .....|.+.||+.+.+.
T Consensus 218 v~v~FfG~~a~t~~g~a~LA~k~~apvvp~~~~R~~~~~~~~i~~~~~~~~~~~~d~~~~t~~~~~~lE~~Ir~~ 292 (314)
T PRK08943 218 VFVDFFATYKATLPGIGRLAKVCRARVVPLFPVYNGKTHRLDIEIRPPMDDLLSADDETIARRMNEEVEQFVGPH 292 (314)
T ss_pred EEeCCCCCchhHhHHHHHHHHHhCCeEEEEEEEEeCCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 2455677889999999877777753 442 1 111 13445666666666655
No 126
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=20.97 E-value=2.7e+02 Score=27.92 Aligned_cols=103 Identities=21% Similarity=0.294 Sum_probs=68.8
Q ss_pred ccccchhHHHHHHhcC---CCCCchhHHhhhhhccCCceEEE-----EeecCCC--ccccHHhHHHHHHHHHHcCCCeEE
Q 011613 16 IFAQGAKLVDLALASG---KIYQDEGFNYIKPSFETGTLHLI-----GLLSDGG--VHSRLDQLQLLLKGASERGAKRIR 85 (481)
Q Consensus 16 vv~q~~~ri~~~i~~g---~~~~~~~~~~~~~~~~~~~lHl~-----GL~Sdgg--vHsh~~hl~~l~~~a~~~g~~~v~ 85 (481)
|-++|+.+|.+.+... ++.-++.+.++...++...+=|+ -|-|+|| |.+|.++|..+++.+++.|+ .
T Consensus 49 I~d~Dv~~l~~~~~~~lNlE~a~~~emi~ia~~vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI---~ 125 (237)
T TIGR00559 49 IQDRDVYDLKEALTTPFNIEMAPTEEMIRIAEEIKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGI---E 125 (237)
T ss_pred CCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHcCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCC---E
Confidence 4568888998888632 45566666665544433333333 4568999 56699999999999999998 4
Q ss_pred EEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccC
Q 011613 86 LHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDR 136 (481)
Q Consensus 86 iH~~~DGrD~~p~s~~~~~~~l~~~~~~~~~~~~~~~iasv~GR~y~aMDr 136 (481)
|=+|.| |. .++++.. ++. |.. +|=-=.|.|--+++.
T Consensus 126 VSLFiD-----P~-----~~qi~~A-~~~---GAd-~VELhTG~YA~a~~~ 161 (237)
T TIGR00559 126 VSLFID-----AD-----KDQISAA-AEV---GAD-RIEIHTGPYANAYNK 161 (237)
T ss_pred EEEEeC-----CC-----HHHHHHH-HHh---CcC-EEEEechhhhcCCCc
Confidence 667765 32 3555442 344 664 676677888546664
No 127
>PRK12677 xylose isomerase; Provisional
Probab=20.96 E-value=2.2e+02 Score=30.32 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHcCCCeEEEEEEecCCC-----CCCCchHHHHHHHHHHHHHHhcCCCCceEE
Q 011613 66 LDQLQLLLKGASERGAKRIRLHILTDGRD-----VLDGSSVGFVETIEKDLAELRGKGVDAQIA 124 (481)
Q Consensus 66 ~~hl~~l~~~a~~~g~~~v~iH~~~DGrD-----~~p~s~~~~~~~l~~~~~~~~~~~~~~~ia 124 (481)
++|+...|++|++.|++.|.||.=-||-+ .....-..+++.|...++...+.|.|-+|+
T Consensus 113 i~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~la 176 (384)
T PRK12677 113 LRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFA 176 (384)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE
No 128
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=20.90 E-value=2.7e+02 Score=24.05 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=10.5
Q ss_pred EEEEEEecCCCCCCC
Q 011613 84 IRLHILTDGRDVLDG 98 (481)
Q Consensus 84 v~iH~~~DGrD~~p~ 98 (481)
-.|-+||||.+..+.
T Consensus 105 ~~iiliTDG~~~~~~ 119 (161)
T cd01450 105 KVIIVLTDGRSDDGG 119 (161)
T ss_pred eEEEEECCCCCCCCc
Confidence 357778888777665
No 129
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.68 E-value=3.3e+02 Score=29.75 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=46.2
Q ss_pred ccHHHHHHhCCcceEEee-ccccccceEEecCCCccccCCCCCcceEeccCCCccccCCCccCCHHHHHHHHHHHHHhCC
Q 011613 263 RTSGEYLVHNGVRTFACS-ETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRR 341 (481)
Q Consensus 263 ~tl~e~Ls~~G~~q~ria-eteK~ahvtfF~nGg~e~~~~~~ge~r~lvpsp~v~tyd~~pemsa~~vtd~ai~~i~~~~ 341 (481)
-.|+.||++.|++.+-++ ++..+|-+ +.. +.+...-.+..|....+-++.+++.++++..++..
T Consensus 118 ~KLA~~lkk~~~kvllVaaD~~RpAA~---------eQL------~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~ 182 (451)
T COG0541 118 GKLAKYLKKKGKKVLLVAADTYRPAAI---------EQL------KQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEG 182 (451)
T ss_pred HHHHHHHHHcCCceEEEecccCChHHH---------HHH------HHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcC
Confidence 459999999999999886 33332210 000 00111111233333334567789999999999999
Q ss_pred CcEEEEeCCC
Q 011613 342 FHQVRVNLPN 351 (481)
Q Consensus 342 ~dfi~vnfa~ 351 (481)
+|+++|+-|.
T Consensus 183 ~DvvIvDTAG 192 (451)
T COG0541 183 YDVVIVDTAG 192 (451)
T ss_pred CCEEEEeCCC
Confidence 9999998653
No 130
>PLN02962 hydroxyacylglutathione hydrolase
Probab=20.67 E-value=83 Score=31.44 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=20.8
Q ss_pred ccccHHhHHHHHHHHHHc-CCCeEEEEE
Q 011613 62 VHSRLDQLQLLLKGASER-GAKRIRLHI 88 (481)
Q Consensus 62 vHsh~~hl~~l~~~a~~~-g~~~v~iH~ 88 (481)
-|.|.||+-++..++++. |+ ++++|.
T Consensus 68 TH~H~DHigg~~~l~~~~~~a-~v~~~~ 94 (251)
T PLN02962 68 THVHADHVTGTGLLKTKLPGV-KSIISK 94 (251)
T ss_pred CCCCchhHHHHHHHHHHCCCC-eEEecc
Confidence 599999999999888775 66 566653
No 131
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=20.48 E-value=2.7e+02 Score=31.64 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=18.0
Q ss_pred eEEEEEEecCCCCCC---CchHHHHHHHHHHHHH
Q 011613 83 RIRLHILTDGRDVLD---GSSVGFVETIEKDLAE 113 (481)
Q Consensus 83 ~v~iH~~~DGrD~~p---~s~~~~~~~l~~~~~~ 113 (481)
+..|-+||||++..+ ....+...++...+++
T Consensus 565 ~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~ 598 (633)
T TIGR02442 565 RPLLVVITDGRANVADGGEPPTDDARTIAAKLAA 598 (633)
T ss_pred ceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHh
Confidence 466888999998664 2233344444444444
No 132
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=20.19 E-value=6.1e+02 Score=22.42 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEe
Q 011613 331 ERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVT 392 (481)
Q Consensus 331 d~ai~~i~~~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIIT 392 (481)
+.+-+.+...+||++++.+..=|.... -. .+.+-..+.++++.+++.+..+|++
T Consensus 54 ~~l~~~~~~~~pd~v~i~~G~ND~~~~-~~-------~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 54 ARLPALLAQHKPDLVILELGGNDGLRG-IP-------PDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred HHHHHHHHhcCCCEEEEeccCcccccC-CC-------HHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 334344555689999999875564321 11 2344455677777777766545544
No 133
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=20.19 E-value=2.6e+02 Score=29.74 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=23.2
Q ss_pred HHhHHHHHHHHHHcCCCeEEEEEEecCCCCC
Q 011613 66 LDQLQLLLKGASERGAKRIRLHILTDGRDVL 96 (481)
Q Consensus 66 ~~hl~~l~~~a~~~g~~~v~iH~~~DGrD~~ 96 (481)
+++++..+++|++.|++.|.+|.=.+|.+.+
T Consensus 114 i~~~kraId~A~eLGa~~v~v~~G~~g~~~~ 144 (382)
T TIGR02631 114 LRKVLRNMDLGAELGAETYVVWGGREGAEYD 144 (382)
T ss_pred HHHHHHHHHHHHHhCCCEEEEccCCCCCcCc
Confidence 5778889999999999877666544454443
No 134
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=20.10 E-value=6.4e+02 Score=22.60 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=31.7
Q ss_pred hCCCcEEEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEec
Q 011613 339 SRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTA 393 (481)
Q Consensus 339 ~~~~dfi~vnfa~~D~vGHtg~~~a~~~aIe~vD~~lGrLl~al~~~gt~vIITS 393 (481)
..++|+|++.+..=|...... ..+++.+.+..+++.++..+..||+.+
T Consensus 65 ~~~~d~vii~~G~ND~~~~~~-------~~~~~~~~~~~~i~~i~~~~~~vil~~ 112 (185)
T cd01832 65 ALRPDLVTLLAGGNDILRPGT-------DPDTYRADLEEAVRRLRAAGARVVVFT 112 (185)
T ss_pred hcCCCEEEEeccccccccCCC-------CHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 358999999986555432111 246677788888888886665555554
Done!