BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011615
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/399 (27%), Positives = 190/399 (47%), Gaps = 55/399 (13%)
Query: 59 LTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYIHK 118
L DFG GDG+T +++F AI LSK GG +LIVP G +LTG +L S+ L++
Sbjct: 30 LLDFGARGDGRTDCSESFKRAIEELSK---QGGGRLIVPEGVFLTGPIHLKSNIELHVKG 86
Query: 119 DALLLASQDESEWXXXXXXXSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQG-- 176
+ + R +S L++ + +V +TG + ++G
Sbjct: 87 TIKFIPDPER------YLPVVLTRFEGIELYNYSPLVYALDCENVAITG-SGVLDGSADN 139
Query: 177 EPWWIKYRKKQF----------------------------------NVTRPYLIEVMFSD 202
E WW KK F + RP ++
Sbjct: 140 EHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCR 199
Query: 203 NVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIV 262
NV + + +I+SP W +HPV S NV+I+ + I + PN DGI+P+SC IE
Sbjct: 200 NVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEKCRFD 257
Query: 263 SGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDS-AAIALGSEMSGGIKDVRAEDI 321
+GDD V +KSG D G ++G+P++++++R + IS S + +GSEMSGG+++V A +
Sbjct: 258 TGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNN 317
Query: 322 TAINTQSGVRIKTAVGRGAYVKEI-YVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPT 380
+N + +R+KT RG Y++ I ++ + + + V + Y + + + LP
Sbjct: 318 VYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE-----EGEYLPV 372
Query: 381 VTGINYRDMVADNVTQSAKLDGIRNDPFTGICISNVTIK 419
V + +++ A + +++G+ ND I IS+ I+
Sbjct: 373 VRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIE 411
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 87/385 (22%), Positives = 147/385 (38%), Gaps = 67/385 (17%)
Query: 61 DFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYIHKDA 120
DFG + DGKT NTKA AI + G ++ +P G + +G+ L S TL + A
Sbjct: 161 DFGAIDDGKTLNTKAIQQAIDSCKP-----GCRVEIPAGTYKSGALWLKSDMTLNLQAGA 215
Query: 121 LLLASQDESEWXXXXXXXSYGR-------------GRDEPGGRFSSLIFGTNLTDVVVTG 167
+LL S++ ++ Y +PG + I G+ + D
Sbjct: 216 ILLGSENPDDYPAGYRLYPYSTIERPASLINAIDPNNSKPGTFRNIRITGSGVID----- 270
Query: 168 GNATIN----------GQGEPWWIKYR-------------------------KKQFNVTR 192
GN + G+ P ++ + K + R
Sbjct: 271 GNGWLRAKTAEITDELGRSLPQYVASKNSKVHEDGILAKNQVEKAVSDGMDLKNAYGQRR 330
Query: 193 PYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCT 252
L+ + +NV ++ T+ + + + + NV+ GL I D+ N DGI +
Sbjct: 331 SSLMTLRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGL-IHQTYDANNGDGIEFGNSQ 389
Query: 253 NTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGG 312
N + +N+ +GDDC+ +G E + + + AI GS
Sbjct: 390 NVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMG--HGAIVTGSHTGAW 447
Query: 313 IKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTM-KYVFWMTGDYG-SHPD 370
I+D+ AE+ T G+R K+ G + + R M+ + K V MT DY S+ +
Sbjct: 448 IEDILAENNVMYLTDIGLRAKSTSTIGGGARNVTFRNNAMRDLAKQVMVMTLDYADSNAN 507
Query: 371 PGFDPKALPTVTGINYRDMVADNVT 395
+ P +P + D NVT
Sbjct: 508 IDYPPAKIPA----QFYDFTLKNVT 528
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 28/268 (10%)
Query: 101 WLTGSFNLTSHFTLYIHKDALLLASQDESEWXXXXXXXSYGRGRDEPGGRFSSLIFGTNL 160
+L+G +L S +L I K L A + + D+ G + I +
Sbjct: 52 FLSGPLSLPSGVSLLIDKGVTLRAVNNAKSFENAPSSCGV---VDKNGKGCDAFITAVST 108
Query: 161 TDVVVTGGNATINGQGE--------PWW---IKYRKKQFNVTRPYLIEVMFSDNVQISNL 209
T+ + G TI+GQG WW + K+ P LI++ S N + N+
Sbjct: 109 TNSGIYGP-GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNV 167
Query: 210 TLIDSPSWNVHPVYSSNVLIQG--LTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDC 267
+LI+SP N H V+S TI+ P + NTDGI+P S N I + I +GDD
Sbjct: 168 SLINSP--NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDN 225
Query: 268 VAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQ 327
VA+K+ K T+++ I L +++GSE + G+ +V +D+ T
Sbjct: 226 VAIKA------YKGRAETRNISI--LHNDFGTGHGMSIGSE-TMGVYNVTVDDLKMNGTT 276
Query: 328 SGVRIKTAVGRGAYVKEIYVRRMTMKTM 355
+G+RIK+ V + + MK +
Sbjct: 277 NGLRIKSDKSAAGVVNGVRYSNVVMKNV 304
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 108/250 (43%), Gaps = 30/250 (12%)
Query: 161 TDVVVTGGNA-TINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNV 219
+D+ +TG + +ING G WW T+P N IS L +++SP V
Sbjct: 72 SDLTITGASGHSINGDGSRWW-DGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPV-QV 129
Query: 220 HPVYSSNVL-IQGLTIRAPID----SPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGW 274
V S+ L ++ +TI NTD + + T I + + DDCVAV SG
Sbjct: 130 FSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG- 188
Query: 275 DEYGIKVGMPTQHLIIRRLICISPDSAAI-ALGSEMSGGIKDVRAEDITAINTQSGVRIK 333
+++ C +I ++G +K+V D T IN+ +GVRIK
Sbjct: 189 -----------ENIYFSGGYCSGGHGLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIK 237
Query: 334 TAVGRGAYVKEIYVRRMTMKTM-KYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVAD 392
T + V ++ + +T+ ++ KY + +YG D + PT TG+ D V D
Sbjct: 238 TNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYG-------DTSSTPT-TGVPITDFVLD 289
Query: 393 NVTQSAKLDG 402
NV S G
Sbjct: 290 NVHGSVVSSG 299
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 154 LIFGTNLTDVVVTGGNA-TINGQGEPWWIKYRKKQFNVTRP--YLIEVMFSDNVQISNLT 210
+I G+N+T +TG + I+G G+ +W + +P +++ + N +I+NL
Sbjct: 65 VISGSNIT---ITGASGHVIDGNGQAYWDGKGSNSNSNQKPDHFIVVQKTTGNSKITNLN 121
Query: 211 LIDSPSWNVHPVYSSNVLIQGLTI--RAPIDSPN-----------TDGINPDSCTNTRIE 257
+ + P SS + I GL + RA D PN TDG + S + ++
Sbjct: 122 IQNWPVHCFDITGSSQLTISGLILDNRAG-DKPNAKSGSLPAAHNTDGFDISSSDHVTLD 180
Query: 258 DNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAI-ALGSEMSGGIKDV 316
+N++ + DDCVAV SG ++++ + C +I ++G + + V
Sbjct: 181 NNHVYNQDDCVAVTSG------------TNIVVSNMYCSGGHGLSIGSVGGKSDNVVDGV 228
Query: 317 RAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMK 356
+ +N+Q+G RIK+ G + + + + + +
Sbjct: 229 QFLSSQVVNSQNGCRIKSNSGATGTINNVTYQNIALTNIS 268
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 101/254 (39%), Gaps = 28/254 (11%)
Query: 157 GTNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSPS 216
G +LT + G A I+G G WW + T+P + + ++ + + ++P
Sbjct: 67 GKDLTVTMADG--AVIDGDGSRWW-DSKGTNGGKTKPKFMYIHDVEDSTFKGINIKNTPV 123
Query: 217 WNVHPVYSSNVLIQGLTIRAPIDSPN----TDGINPDSCTNTRIEDNYIVSGDDCVAVKS 272
+ V ++NV + TI N TDG + T I + + DDC+A+ S
Sbjct: 124 QAI-SVQATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINS 182
Query: 273 GWDEYGIKVGMPTQHLIIRRLICISPDSAAI-ALGSEMSGGIKDVRAEDITAINTQSGVR 331
G + + C +I ++G +K+V D T N+ +GVR
Sbjct: 183 G------------ESISFTGGTCSGGHGLSIGSVGGRDDNTVKNVTISDSTVSNSANGVR 230
Query: 332 IKTAVGRGAYVKEIYVRRMTMKTM-KYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMV 390
IKT V EI + + + Y + DY + P P+ TGI D+
Sbjct: 231 IKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDYENGS-----PTGTPS-TGIPITDVT 284
Query: 391 ADNVTQSAKLDGIR 404
D VT + + D +
Sbjct: 285 VDGVTGTLEDDATQ 298
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 101/244 (41%), Gaps = 32/244 (13%)
Query: 163 VVVTGGNA-TINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHP 221
+ VTG + IN G WW K +P D+ I+ L + ++P
Sbjct: 97 ITVTGASGHLINCDGARWW--DGKGTSGKKKPKFFYAHGLDSSSITGLNIKNTP-LMAFS 153
Query: 222 VYSSNVLIQGLTIR-APIDSP---NTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEY 277
V ++++ +TI A D+ NTD + + I ++ + DDC+AV SG
Sbjct: 154 VQANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSG---- 209
Query: 278 GIKVGMPTQHLIIRRLICISPDSAAI-ALGSEMSGGIKDVRAEDITAINTQSGVRIKTAV 336
+++ CI +I ++G + +K+V E T N+++ VRIKT
Sbjct: 210 --------ENIWFTGGTCIGGHGLSIGSVGDRSNNVVKNVTIEHSTVSNSENAVRIKTIS 261
Query: 337 GRGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFD---PKALPTVTGINYRDMVADN 393
G V EI + M + DYG ++ P PT G+ +D+ ++
Sbjct: 262 GATGSVSEITYSNIVMSGIS-------DYGVVIQQDYEDGKPTGKPT-NGVTIQDVKLES 313
Query: 394 VTQS 397
VT S
Sbjct: 314 VTGS 317
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 20/227 (8%)
Query: 171 TINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSP--SWNVHPVYSSNV- 227
+I+ QG WW + T+P + I L ++++P +++++ + V
Sbjct: 79 SIDCQGSRWW-DSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVY 137
Query: 228 -LIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQ 286
+I + NTD + S T I + + DDC+A+ SG
Sbjct: 138 DVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSG------------T 185
Query: 287 HLIIRRLICISPDSAAI-ALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEI 345
++ C +I ++G +K V + +N+ +GVRIKT G V +
Sbjct: 186 NITFTGGTCSGGHGLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGV 245
Query: 346 YVRRMTMKTM-KYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVA 391
+T+ + KY + DY + G +P +TG+ +
Sbjct: 246 TYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGVP-ITGLTLSKITG 291
>pdb|4AKF|A Chain A, Crystal Structure Of Vipd From Legionella Pneumophila
Length = 577
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 385 NYRDMVADNVTQSAKLDGIRNDPFTGICISNV 416
NY D + D +T AK+D I+ + +CI V
Sbjct: 474 NYLDQIEDILTVDAKMDDIQKEKAFALCIKQV 505
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 81/195 (41%), Gaps = 17/195 (8%)
Query: 203 NVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIV 262
+ + ++ L+D+P+++ S+ + + IR + DGI+ +N + D +
Sbjct: 137 HFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVT 194
Query: 263 SGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLIC-ISPDSAAIALGSEMSGGIKDVRAEDI 321
+ D+CV VKS P ++++ + C S A +LG++ + D+ ++
Sbjct: 195 NKDECVTVKS-----------PANNILVESIYCNWSGGCAMGSLGADTD--VTDIVYRNV 241
Query: 322 TAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTV 381
++ IK+ G G V + + Y + G + S D L +
Sbjct: 242 YTWSSNQMYMIKSNGGSGT-VSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDGVQLNNI 300
Query: 382 TGINYRDMVADNVTQ 396
T N++ A+ T+
Sbjct: 301 TVKNWKGTEANGATR 315
>pdb|1KSA|A Chain A, Crystal Structure Of The Bacteriochlorophyll A Protein
From Chlorobium Tepidum
pdb|1KSA|B Chain B, Crystal Structure Of The Bacteriochlorophyll A Protein
From Chlorobium Tepidum
pdb|3BSD|A Chain A, Light Harvesting Protein From Rc Of Chlorobium Tepidum
Length = 366
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 39 TKNSYTIEFQALNCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAAD 89
TKN TIE N K + G V G S+T +F ++ NL Y +D
Sbjct: 78 TKNKLTIEADIANETKERRISVGEGMVSVGDFSHTFSFEGSVVNLFYYRSD 128
>pdb|3ENI|A Chain A, Crystal Structure Of The Fenna-Matthews-Olson Protein From
Chlorobaculum Tepidum
pdb|3ENI|C Chain C, Crystal Structure Of The Fenna-Matthews-Olson Protein From
Chlorobaculum Tepidum
Length = 365
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 39 TKNSYTIEFQALNCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAAD 89
TKN TIE N K + G V G S+T +F ++ NL Y +D
Sbjct: 77 TKNKLTIEADIANETKERRISVGEGMVSVGDFSHTFSFEGSVVNLFYYRSD 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,762,935
Number of Sequences: 62578
Number of extensions: 633163
Number of successful extensions: 1245
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1222
Number of HSP's gapped (non-prelim): 18
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)