Query 011615
Match_columns 481
No_of_seqs 378 out of 2197
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:19:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 4E-77 8.7E-82 611.5 46.9 363 53-449 49-425 (443)
2 PLN02155 polygalacturonase 100.0 7.1E-76 1.5E-80 593.1 44.7 358 54-448 25-393 (394)
3 PLN02188 polygalacturonase/gly 100.0 1.4E-75 3E-80 593.5 40.3 361 50-447 30-404 (404)
4 PLN03003 Probable polygalactur 100.0 6.2E-75 1.3E-79 590.0 43.8 361 52-451 19-393 (456)
5 PLN03010 polygalacturonase 100.0 4.3E-74 9.3E-79 581.1 45.8 348 53-448 43-404 (409)
6 PLN02218 polygalacturonase ADP 100.0 1.8E-74 3.9E-79 589.1 43.3 355 52-447 63-431 (431)
7 PF00295 Glyco_hydro_28: Glyco 100.0 2.5E-56 5.4E-61 446.6 29.2 309 89-436 4-322 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 3.3E-47 7.1E-52 391.9 29.2 303 51-362 77-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 4.1E-26 8.8E-31 228.4 22.4 175 53-271 34-209 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 8.3E-21 1.8E-25 180.3 19.3 212 56-330 1-224 (225)
11 PLN03003 Probable polygalactur 99.9 3.2E-19 7E-24 182.5 29.9 244 194-470 105-397 (456)
12 PLN02218 polygalacturonase ADP 99.8 5.5E-19 1.2E-23 181.3 24.1 196 194-421 148-383 (431)
13 PLN03010 polygalacturonase 99.8 4.5E-18 9.7E-23 173.1 29.1 205 194-431 131-358 (409)
14 PLN02793 Probable polygalactur 99.8 4.1E-18 8.8E-23 175.7 29.0 196 194-421 135-369 (443)
15 PLN02155 polygalacturonase 99.8 7.7E-18 1.7E-22 171.0 27.8 195 195-421 108-338 (394)
16 PF00295 Glyco_hydro_28: Glyco 99.8 9.2E-18 2E-22 168.3 22.9 198 193-422 51-284 (326)
17 PF03718 Glyco_hydro_49: Glyco 99.8 4.3E-17 9.3E-22 165.0 25.8 270 91-420 232-553 (582)
18 PLN02188 polygalacturonase/gly 99.8 3.4E-17 7.5E-22 167.0 25.6 197 195-421 115-349 (404)
19 TIGR03805 beta_helix_1 paralle 99.6 1.3E-12 2.8E-17 130.1 26.8 117 200-334 61-181 (314)
20 COG5434 PGU1 Endopygalactoruna 99.4 1.2E-11 2.6E-16 128.9 15.1 212 151-394 165-398 (542)
21 TIGR03805 beta_helix_1 paralle 99.2 7.8E-10 1.7E-14 110.3 18.4 153 194-363 78-251 (314)
22 TIGR03808 RR_plus_rpt_1 twin-a 98.8 2.2E-07 4.7E-12 94.4 17.6 143 194-360 107-289 (455)
23 PF12541 DUF3737: Protein of u 98.8 5.2E-08 1.1E-12 91.4 10.6 162 158-360 55-230 (277)
24 PF13229 Beta_helix: Right han 98.7 1.9E-07 4.2E-12 82.9 11.2 141 195-361 2-144 (158)
25 PF12541 DUF3737: Protein of u 98.5 6.4E-07 1.4E-11 84.2 10.0 101 196-332 131-231 (277)
26 PF13229 Beta_helix: Right han 98.4 4.5E-06 9.8E-11 74.0 12.2 120 194-333 24-145 (158)
27 PF05048 NosD: Periplasmic cop 98.3 1.8E-05 3.9E-10 75.9 14.8 114 195-332 37-151 (236)
28 PLN02480 Probable pectinestera 98.3 0.00033 7.2E-09 70.2 23.7 132 198-354 128-276 (343)
29 smart00656 Amb_all Amb_all dom 98.3 4E-05 8.6E-10 70.9 15.4 97 218-326 33-144 (190)
30 COG3866 PelB Pectate lyase [Ca 98.2 3.4E-05 7.4E-10 73.9 14.8 136 196-348 95-249 (345)
31 PF03718 Glyco_hydro_49: Glyco 98.2 1.3E-05 2.8E-10 82.5 12.9 191 199-419 275-513 (582)
32 PF07602 DUF1565: Protein of u 98.2 0.00011 2.5E-09 70.0 18.1 39 73-116 15-58 (246)
33 PRK10123 wcaM putative colanic 98.2 9.7E-05 2.1E-09 70.2 17.2 52 53-117 31-85 (464)
34 PF05048 NosD: Periplasmic cop 98.2 3E-05 6.5E-10 74.3 13.4 136 194-360 14-150 (236)
35 COG3866 PelB Pectate lyase [Ca 97.9 0.00087 1.9E-08 64.5 18.1 148 155-332 95-258 (345)
36 PF14592 Chondroitinas_B: Chon 97.9 0.00042 9.2E-09 70.7 16.5 26 72-102 3-28 (425)
37 PF00544 Pec_lyase_C: Pectate 97.9 7.3E-05 1.6E-09 69.8 10.2 96 218-326 38-158 (200)
38 smart00656 Amb_all Amb_all dom 97.9 0.00063 1.4E-08 63.0 16.3 124 194-327 32-167 (190)
39 COG3420 NosD Nitrous oxidase a 97.9 0.0013 2.7E-08 64.3 17.5 158 89-297 32-192 (408)
40 PLN02682 pectinesterase family 97.8 0.016 3.4E-07 58.7 25.6 43 72-116 81-126 (369)
41 PF12708 Pectate_lyase_3: Pect 97.8 0.0013 2.9E-08 61.9 16.3 124 204-359 94-224 (225)
42 PLN02773 pectinesterase 97.7 0.011 2.3E-07 58.8 22.4 134 196-354 96-239 (317)
43 PLN02497 probable pectinestera 97.5 0.019 4.1E-07 57.4 21.1 30 72-102 43-72 (331)
44 PLN02176 putative pectinestera 97.5 0.038 8.3E-07 55.4 22.9 30 72-102 50-79 (340)
45 PLN02634 probable pectinestera 97.4 0.076 1.6E-06 53.6 23.2 42 72-115 67-111 (359)
46 PRK10531 acyl-CoA thioesterase 97.4 0.059 1.3E-06 55.4 22.8 118 195-326 199-336 (422)
47 PLN02304 probable pectinestera 97.1 0.15 3.3E-06 51.7 22.4 47 67-116 82-131 (379)
48 PLN02468 putative pectinestera 97.1 0.087 1.9E-06 56.7 21.6 139 197-355 340-490 (565)
49 PLN02170 probable pectinestera 97.0 0.13 2.8E-06 54.5 21.8 135 195-354 306-451 (529)
50 PLN02432 putative pectinestera 97.0 0.21 4.5E-06 49.2 21.6 30 72-102 22-51 (293)
51 PLN02708 Probable pectinestera 97.0 0.15 3.2E-06 54.8 22.1 112 195-326 323-449 (553)
52 PLN02665 pectinesterase family 97.0 0.38 8.2E-06 48.9 23.8 137 195-355 147-298 (366)
53 PF12218 End_N_terminal: N ter 97.0 0.00058 1.2E-08 49.4 2.6 39 64-108 1-40 (67)
54 PLN02201 probable pectinestera 97.0 0.13 2.8E-06 54.7 21.2 140 196-355 287-442 (520)
55 PLN02933 Probable pectinestera 97.0 0.18 4E-06 53.5 22.1 141 195-355 298-454 (530)
56 PLN02217 probable pectinestera 96.9 0.15 3.2E-06 55.7 21.6 140 196-355 331-486 (670)
57 PLN02671 pectinesterase 96.9 0.13 2.9E-06 51.9 19.9 43 72-116 70-115 (359)
58 PLN02713 Probable pectinestera 96.9 0.14 3.1E-06 55.0 21.2 140 196-355 334-489 (566)
59 PLN03043 Probable pectinestera 96.8 0.29 6.2E-06 52.5 22.6 141 195-355 306-462 (538)
60 PF00544 Pec_lyase_C: Pectate 96.8 0.0076 1.6E-07 56.2 9.6 127 196-332 39-187 (200)
61 PLN02301 pectinesterase/pectin 96.8 0.22 4.7E-06 53.4 21.5 141 195-355 316-472 (548)
62 PLN02484 probable pectinestera 96.8 0.24 5.3E-06 53.5 22.0 141 195-355 353-509 (587)
63 PLN02506 putative pectinestera 96.8 0.17 3.8E-06 54.0 20.6 66 195-266 312-382 (537)
64 PLN02416 probable pectinestera 96.7 0.26 5.6E-06 52.8 21.4 139 197-355 312-466 (541)
65 PLN02313 Pectinesterase/pectin 96.7 0.26 5.7E-06 53.3 21.4 140 196-355 356-511 (587)
66 PLN02745 Putative pectinestera 96.7 0.33 7.2E-06 52.6 22.1 140 196-355 366-521 (596)
67 PLN02916 pectinesterase family 96.7 0.35 7.6E-06 51.1 21.6 141 195-355 270-426 (502)
68 PLN02197 pectinesterase 96.6 0.25 5.4E-06 53.4 20.4 140 196-355 358-514 (588)
69 PF01095 Pectinesterase: Pecti 96.6 0.033 7.2E-07 55.2 12.9 133 198-355 83-236 (298)
70 PLN02995 Probable pectinestera 96.6 0.37 8E-06 51.6 21.5 139 197-355 307-461 (539)
71 PLN02314 pectinesterase 96.6 0.32 7E-06 52.7 21.2 139 196-355 359-509 (586)
72 PLN02488 probable pectinestera 96.3 0.8 1.7E-05 48.3 21.4 138 197-354 279-432 (509)
73 PF01696 Adeno_E1B_55K: Adenov 96.3 0.46 9.9E-06 48.2 18.6 53 58-125 45-99 (386)
74 PLN02990 Probable pectinestera 96.2 0.67 1.5E-05 50.0 20.6 139 197-355 342-496 (572)
75 COG3420 NosD Nitrous oxidase a 95.9 0.084 1.8E-06 51.9 10.8 97 191-305 148-244 (408)
76 COG4677 PemB Pectin methyleste 95.2 3.4 7.5E-05 40.7 20.6 46 71-117 92-140 (405)
77 PF03211 Pectate_lyase: Pectat 94.7 0.85 1.8E-05 42.7 13.0 130 225-388 61-194 (215)
78 PF09251 PhageP22-tail: Salmon 93.3 6.4 0.00014 40.2 16.9 65 285-351 263-346 (549)
79 PRK10123 wcaM putative colanic 91.3 0.88 1.9E-05 43.9 7.7 64 285-354 300-373 (464)
80 TIGR03804 para_beta_helix para 90.6 0.25 5.3E-06 33.8 2.6 26 246-271 2-27 (44)
81 TIGR03804 para_beta_helix para 90.2 0.33 7.1E-06 33.1 3.0 40 219-263 2-41 (44)
82 PF03211 Pectate_lyase: Pectat 90.1 11 0.00023 35.5 13.7 129 201-349 60-194 (215)
83 PF07602 DUF1565: Protein of u 89.4 5.4 0.00012 38.3 11.5 43 219-263 91-133 (246)
84 PF01696 Adeno_E1B_55K: Adenov 88.7 9.8 0.00021 38.8 13.3 109 198-332 117-226 (386)
85 PLN02773 pectinesterase 86.4 14 0.0003 36.9 12.8 112 220-355 97-212 (317)
86 PLN02698 Probable pectinestera 84.1 27 0.00058 37.3 14.4 137 198-354 266-418 (497)
87 PLN02480 Probable pectinestera 83.1 56 0.0012 33.1 17.3 112 221-355 128-252 (343)
88 PF08480 Disaggr_assoc: Disagg 80.2 30 0.00065 31.5 10.9 15 312-326 62-76 (198)
89 PF08480 Disaggr_assoc: Disagg 78.2 37 0.00081 30.9 10.9 96 202-327 2-110 (198)
90 PLN02665 pectinesterase family 78.2 42 0.0009 34.3 12.7 114 221-356 150-273 (366)
91 PLN02682 pectinesterase family 77.5 74 0.0016 32.6 14.2 21 195-215 156-176 (369)
92 PLN02634 probable pectinestera 72.2 96 0.0021 31.6 13.4 18 198-215 145-162 (359)
93 PLN02708 Probable pectinestera 70.0 69 0.0015 34.7 12.6 111 222-355 327-449 (553)
94 PF01095 Pectinesterase: Pecti 66.4 86 0.0019 31.1 11.7 110 222-354 84-201 (298)
95 PLN02432 putative pectinestera 66.3 1E+02 0.0023 30.5 12.1 18 198-215 90-107 (293)
96 KOG1777 Putative Zn-finger pro 65.1 1.8E+02 0.0039 30.3 13.6 38 76-115 35-72 (625)
97 PLN02671 pectinesterase 64.9 89 0.0019 31.9 11.5 20 195-214 147-166 (359)
98 PLN02506 putative pectinestera 62.7 97 0.0021 33.5 11.9 112 220-354 314-433 (537)
99 PLN02698 Probable pectinestera 62.6 1.1E+02 0.0024 32.8 12.2 113 221-355 266-385 (497)
100 PF14592 Chondroitinas_B: Chon 62.5 25 0.00055 36.5 7.2 146 227-400 166-328 (425)
101 PLN02916 pectinesterase family 61.8 1.5E+02 0.0032 31.8 12.9 112 221-355 273-392 (502)
102 PLN02170 probable pectinestera 61.8 1.4E+02 0.003 32.1 12.8 114 220-356 308-428 (529)
103 PLN02217 probable pectinestera 59.7 1.1E+02 0.0023 34.1 11.7 112 222-355 334-452 (670)
104 PLN02416 probable pectinestera 58.9 1.4E+02 0.003 32.4 12.3 112 222-355 314-432 (541)
105 PLN02301 pectinesterase/pectin 58.8 1.2E+02 0.0027 32.7 11.9 113 221-355 319-438 (548)
106 PLN02933 Probable pectinestera 58.4 2.5E+02 0.0054 30.4 13.9 113 221-355 301-420 (530)
107 PLN02713 Probable pectinestera 58.4 1.3E+02 0.0029 32.7 12.1 111 222-355 337-455 (566)
108 PF09251 PhageP22-tail: Salmon 57.9 74 0.0016 32.8 9.3 55 286-354 311-366 (549)
109 PLN02745 Putative pectinestera 57.6 2.3E+02 0.0049 31.2 13.8 112 221-355 368-487 (596)
110 PRK10531 acyl-CoA thioesterase 57.3 1.9E+02 0.0041 30.2 12.5 126 220-355 201-336 (422)
111 PLN02488 probable pectinestera 56.2 2.2E+02 0.0047 30.6 12.9 113 222-356 281-400 (509)
112 PLN02497 probable pectinestera 56.1 1.7E+02 0.0036 29.6 11.6 20 197-216 110-129 (331)
113 PLN02201 probable pectinestera 55.7 2.3E+02 0.005 30.5 13.2 112 221-355 289-408 (520)
114 PLN02197 pectinesterase 55.5 1.5E+02 0.0032 32.5 11.9 113 221-355 360-480 (588)
115 PLN02176 putative pectinestera 55.3 2.4E+02 0.0052 28.6 15.0 17 199-215 119-135 (340)
116 PLN02314 pectinesterase 53.9 1.6E+02 0.0034 32.3 11.8 114 221-356 361-481 (586)
117 PLN02995 Probable pectinestera 53.6 1.6E+02 0.0035 31.8 11.8 112 222-355 309-427 (539)
118 PLN02313 Pectinesterase/pectin 53.3 2.2E+02 0.0047 31.2 12.8 113 222-356 359-478 (587)
119 PLN02990 Probable pectinestera 53.0 2.1E+02 0.0045 31.3 12.5 114 222-356 344-463 (572)
120 PLN02484 probable pectinestera 52.2 2.4E+02 0.0052 30.9 12.9 112 221-355 356-475 (587)
121 smart00710 PbH1 Parallel beta- 51.8 16 0.00034 20.7 2.3 19 315-333 3-22 (26)
122 PLN02304 probable pectinestera 43.8 3.8E+02 0.0083 27.6 12.8 21 195-215 155-175 (379)
123 PLN02468 putative pectinestera 42.5 1.5E+02 0.0032 32.3 9.5 111 222-355 342-460 (565)
124 PF11429 Colicin_D: Colicin D; 41.5 67 0.0015 25.8 5.0 58 60-123 10-73 (92)
125 PLN03043 Probable pectinestera 40.4 1.7E+02 0.0037 31.6 9.5 113 221-355 309-428 (538)
126 smart00722 CASH Domain present 31.4 1.9E+02 0.0041 24.2 6.9 13 201-213 44-56 (146)
127 PF02741 FTR_C: FTR, proximal 27.4 51 0.0011 28.8 2.4 39 66-108 103-145 (150)
128 TIGR03119 one_C_fhcD formylmet 25.8 83 0.0018 30.6 3.7 40 65-108 239-282 (287)
129 PRK09752 adhesin; Provisional 25.6 1.2E+03 0.026 27.9 16.2 38 314-351 222-262 (1250)
130 PF00879 Defensin_propep: Defe 25.0 1.2E+02 0.0027 21.6 3.5 15 14-28 1-15 (52)
131 PHA00672 hypothetical protein 24.0 1.1E+02 0.0023 26.1 3.6 21 92-112 50-70 (152)
132 PRK09891 cold shock gene; Prov 22.5 63 0.0014 23.4 1.7 21 6-26 5-25 (76)
133 COG4704 Uncharacterized protei 22.4 2.1E+02 0.0046 24.7 5.1 36 70-106 59-94 (151)
134 smart00722 CASH Domain present 22.3 1.8E+02 0.0039 24.3 5.1 67 199-268 73-143 (146)
135 PF10162 G8: G8 domain; Inter 21.9 2.4E+02 0.0051 23.9 5.6 36 90-127 11-46 (125)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=4e-77 Score=611.48 Aligned_cols=363 Identities=25% Similarity=0.428 Sum_probs=321.2
Q ss_pred cceEEEEeecCccCCCccchHHHHHHHHHHhhhcccCCCcEEEeCCCc-ceeeeEEe----ccceeEEEccCcEEEecCC
Q 011615 53 RKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGK-WLTGSFNL----TSHFTLYIHKDALLLASQD 127 (481)
Q Consensus 53 ~~~~~nV~dyGA~gDG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~-Yl~~~i~l----~s~~~l~l~~ga~i~~~~~ 127 (481)
.+.+|||+||||+|||++|||+|||+||++||+ +.+|++|+||+|+ |++++|.| +|+++|+++ |+|+++.+
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~--~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~d 124 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACS--SKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPKD 124 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhc--cCCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccCC
Confidence 458999999999999999999999999996554 2578999999995 99999999 899999885 89999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceeeEEEeceeceEEEccceeeeCCCchhhhhccc---cCCCCCCCeeEEEEeeccE
Q 011615 128 ESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRK---KQFNVTRPYLIEVMFSDNV 204 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~G~idG~g~~ww~~~~~---~~~~~~rp~~i~~~~~~nv 204 (481)
+.+|+.. ....||++.+++||+|+|. |+|||+|+.||+.... ......||++|.|.+|+|+
T Consensus 125 ~~~w~~~---------------~~~~~i~~~~~~ni~ItG~-G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv 188 (443)
T PLN02793 125 PDVWKGL---------------NPRKWLYFHGVNHLTVEGG-GTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDL 188 (443)
T ss_pred hHHccCC---------------CCceEEEEecCceEEEEec-eEEECCCcccccccccccCCCCccCCceEEEEEeeccE
Confidence 9888632 1246999999999999996 9999999999975321 1123458999999999999
Q ss_pred EEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCc
Q 011615 205 QISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMP 284 (481)
Q Consensus 205 ~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~ 284 (481)
+|+|++++|+|+|++++..|+||+|++++|.++..++|+||||+.+|+||+|+||+|.+|||||++|++
T Consensus 189 ~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~----------- 257 (443)
T PLN02793 189 RVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGN----------- 257 (443)
T ss_pred EEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCC-----------
Confidence 999999999999999999999999999999999889999999999999999999999999999999986
Q ss_pred eeeEEEEEEEEeCCCCceEEeccC----cCCCEEEEEEEeeEEEcCCceEEEEeecCCCceeecEEEEeeEEccceeeEE
Q 011615 285 TQHLIIRRLICISPDSAAIALGSE----MSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFW 360 (481)
Q Consensus 285 s~nI~I~n~~~~~~~~~gisIGs~----~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~f~ni~~~~~~~~i~ 360 (481)
++||+|+||+|.+ +|||+|||+ +.++|+||+|+||+|.++.+|+|||||++++|.|+||+|+||+|+++.+||.
T Consensus 258 s~nI~I~n~~c~~--GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~ 335 (443)
T PLN02793 258 SSRIKIRNIACGP--GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPII 335 (443)
T ss_pred cCCEEEEEeEEeC--CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEE
Confidence 8999999999987 789999997 3467999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCCCCCCCCCCCeEEeEEEEEEEEEcc-CeeEEEeccCCCCeeeEEEEeEEEEecCCCCccceEEeeeeccC-
Q 011615 361 MTGDYGSHPDPGFDPKALPTVTGINYRDMVADNV-TQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQGIT- 438 (481)
Q Consensus 361 i~~~y~~~~~~~~~~~~~~~i~nItf~nI~~~~~-~~~~~l~g~~~~~~~~I~~~ni~i~~~~~~~~~~~~c~nv~g~~- 438 (481)
|+++|++....+.++...+.|+||+|+||+++.. ..++.|.|+++.||+||+|+||+|+..+++ ...+.|.|++|..
T Consensus 336 I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~~~ 414 (443)
T PLN02793 336 IDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGSSS 414 (443)
T ss_pred EEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEeEC
Confidence 9999976432222334457999999999999986 568899999999999999999999976433 5578999999987
Q ss_pred CcccCcccCCC
Q 011615 439 SRVTPQACELL 449 (481)
Q Consensus 439 ~~~~p~~c~~~ 449 (481)
+.+.|+||+..
T Consensus 415 ~~~~p~~C~~~ 425 (443)
T PLN02793 415 GQVYPPPCFSD 425 (443)
T ss_pred CeEcCCccccC
Confidence 55788899864
No 2
>PLN02155 polygalacturonase
Probab=100.00 E-value=7.1e-76 Score=593.10 Aligned_cols=358 Identities=22% Similarity=0.369 Sum_probs=314.7
Q ss_pred ceEEEEeecCccCCCccchHHHHHHHHHHhhhcccCCCcEEEeCCCcceeeeEEe----ccceeEEEccCcEEEecCCCC
Q 011615 54 KHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNL----TSHFTLYIHKDALLLASQDES 129 (481)
Q Consensus 54 ~~~~nV~dyGA~gDG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl~~~i~l----~s~~~l~l~~ga~i~~~~~~~ 129 (481)
+.+|||+||||+|||+||||+|||+||++||. +.+|++|+||+|+|++++|.| ||+++|+|+ |+|+++.++.
T Consensus 25 ~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~--~~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l~--G~l~~~~d~~ 100 (394)
T PLN02155 25 SNVFNVVSFGAKPDGVTDSTAAFLKAWQGACG--SASSATVVVPTGTFLLKVITFGGPCKSKITFQVA--GTVVAPEDYR 100 (394)
T ss_pred CcEEEhhhcCcCCCCccccHHHHHHHHHHHcc--cCCCeEEEECCCcEEEEEEEEcccCCCCceEEEe--eEEECccccc
Confidence 46899999999999999999999999974443 168899999999999999999 899999996 5888876665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceeeEEEeceeceEEEccceeeeCCCchhhhhccccCCCCCCCeeEEEEeeccEEEEee
Q 011615 130 EWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNL 209 (481)
Q Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~G~idG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~g~ 209 (481)
.|.. ...|+.+.+++++.|+| |+|||||+.||...........+|+++.|.+|+|++|+|+
T Consensus 101 ~~~~-----------------~~~wi~~~~~~~i~i~G--G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gi 161 (394)
T PLN02155 101 TFGN-----------------SGYWILFNKVNRFSLVG--GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGV 161 (394)
T ss_pred cccc-----------------cceeEEEECcCCCEEEc--cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECe
Confidence 5531 12489999999999999 9999999999976443333445788999999999999999
Q ss_pred EEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEE
Q 011615 210 TLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLI 289 (481)
Q Consensus 210 ~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~ 289 (481)
+++|||.|++++..|+||+|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||+|+++ ++||+
T Consensus 162 tl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~g-----------s~nI~ 230 (394)
T PLN02155 162 KSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPG-----------TRNFL 230 (394)
T ss_pred EEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCC-----------CceEE
Confidence 9999999999999999999999999999889999999999999999999999999999999997 89999
Q ss_pred EEEEEEeCCCCceEEeccC----cCCCEEEEEEEeeEEEcCCceEEEEeecC-CCceeecEEEEeeEEccceeeEEEEcc
Q 011615 290 IRRLICISPDSAAIALGSE----MSGGIKDVRAEDITAINTQSGVRIKTAVG-RGAYVKEIYVRRMTMKTMKYVFWMTGD 364 (481)
Q Consensus 290 I~n~~~~~~~~~gisIGs~----~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g-~~g~v~nI~f~ni~~~~~~~~i~i~~~ 364 (481)
|+|++|.+ +||++|||+ ..++|+||+|+||+|.++.+|+|||||.+ ++|+|+||+|+||+|+++++||.|+|.
T Consensus 231 I~n~~c~~--GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~ 308 (394)
T PLN02155 231 ITKLACGP--GHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQN 308 (394)
T ss_pred EEEEEEEC--CceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEec
Confidence 99999997 789999997 36789999999999999999999999975 689999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCeEEeEEEEEEEEEcc-CeeEEEeccCCCCeeeEEEEeEEEEecCCCCccceEEeeeeccCCc-cc
Q 011615 365 YGSHPDPGFDPKALPTVTGINYRDMVADNV-TQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQGITSR-VT 442 (481)
Q Consensus 365 y~~~~~~~~~~~~~~~i~nItf~nI~~~~~-~~~~~l~g~~~~~~~~I~~~ni~i~~~~~~~~~~~~c~nv~g~~~~-~~ 442 (481)
|++....+..+...+.|+||+|+||+++.. ..++.|.|+++.||+||+|+||+++.. ++.+..++|.||+|.... +.
T Consensus 309 Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~-~~~~~~~~C~n~~G~~~~~~~ 387 (394)
T PLN02155 309 YCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYN-KGTPATSFCFNAVGKSLGVIQ 387 (394)
T ss_pred ccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEec-CCCccCcEEeccEeEEcccCC
Confidence 986432222223447999999999999987 568899999999999999999999987 345568999999998744 47
Q ss_pred CcccCC
Q 011615 443 PQACEL 448 (481)
Q Consensus 443 p~~c~~ 448 (481)
|++|++
T Consensus 388 p~~c~~ 393 (394)
T PLN02155 388 PTSCLN 393 (394)
T ss_pred cccccC
Confidence 888975
No 3
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.4e-75 Score=593.54 Aligned_cols=361 Identities=23% Similarity=0.372 Sum_probs=314.6
Q ss_pred ccccceEEEEeecCccCCCccchHHHHHHHHHHhhhcccCCCcEEEeCCCcceeeeEEeccc----eeEEEccCcEEEec
Q 011615 50 LNCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSH----FTLYIHKDALLLAS 125 (481)
Q Consensus 50 ~~~~~~~~nV~dyGA~gDG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl~~~i~l~s~----~~l~l~~ga~i~~~ 125 (481)
-..++.+|||+||||+|||++|||+|||+||++||+ +.++++|+||+|+|+++++.|+++ ..|.| +|+++
T Consensus 30 ~~~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~--~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l----~L~~s 103 (404)
T PLN02188 30 KGSSTFLFDVRSFGARANGHTDDSKAFMAAWKAACA--STGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF----TLKAA 103 (404)
T ss_pred ccCCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhc--cCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE----EEEcC
Confidence 456778999999999999999999999999986553 257789999999999999999732 23333 78999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceeeEEEeceeceEEEccceeeeCCCchhhhhccc--cCCCCCCCeeEEEEeecc
Q 011615 126 QDESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRK--KQFNVTRPYLIEVMFSDN 203 (481)
Q Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~G~idG~g~~ww~~~~~--~~~~~~rp~~i~~~~~~n 203 (481)
.++++|+.. ..|+.+..++||+|+|. |+|||+|+.||+.... ......||++|.|.+|+|
T Consensus 104 ~d~~~y~~~-----------------~~~i~~~~~~ni~I~G~-G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~n 165 (404)
T PLN02188 104 TDLSRYGSG-----------------NDWIEFGWVNGLTLTGG-GTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNN 165 (404)
T ss_pred CCHHHCCCc-----------------cceEEEeceeeEEEEee-EEEeCCCcccccccccccCCCCCcCceEEEEEeeee
Confidence 999888631 24778888999999996 9999999999975321 123456999999999999
Q ss_pred EEEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCC
Q 011615 204 VQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGM 283 (481)
Q Consensus 204 v~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~ 283 (481)
++|+|++++|||+|++++..|++|+|++++|.++.+++|+||||+++|+||+|+||+|.+|||||++|++
T Consensus 166 v~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg---------- 235 (404)
T PLN02188 166 TVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQG---------- 235 (404)
T ss_pred EEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccC----------
Confidence 9999999999999999999999999999999999889999999999999999999999999999999997
Q ss_pred ceeeEEEEEEEEeCCCCceEEecc----CcCCCEEEEEEEeeEEEcCCceEEEEeecC--CCceeecEEEEeeEEcccee
Q 011615 284 PTQHLIIRRLICISPDSAAIALGS----EMSGGIKDVRAEDITAINTQSGVRIKTAVG--RGAYVKEIYVRRMTMKTMKY 357 (481)
Q Consensus 284 ~s~nI~I~n~~~~~~~~~gisIGs----~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g--~~g~v~nI~f~ni~~~~~~~ 357 (481)
++||+|+|+.|.+ +|||+||| ++.++|+||+|+||+|.++.+|+|||||.+ ++|.|+||+|+||+|+++.+
T Consensus 236 -~~nI~I~n~~c~~--ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~ 312 (404)
T PLN02188 236 -NSQVTITRIRCGP--GHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTN 312 (404)
T ss_pred -CccEEEEEEEEcC--CCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccc
Confidence 7899999999986 78999999 556789999999999999999999999976 35899999999999999999
Q ss_pred eEEEEcccCCCCCCCCCCCCCCeEEeEEEEEEEEEcc-CeeEEEeccCCCCeeeEEEEeEEEEecCCCCccceEEeeeec
Q 011615 358 VFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNV-TQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQG 436 (481)
Q Consensus 358 ~i~i~~~y~~~~~~~~~~~~~~~i~nItf~nI~~~~~-~~~~~l~g~~~~~~~~I~~~ni~i~~~~~~~~~~~~c~nv~g 436 (481)
||.|++.|+++..+...+...+.|+||+|+||+++.. ..++.|.|+++.||+||+|+||+++...+.....+.|.||+|
T Consensus 313 pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g 392 (404)
T PLN02188 313 PIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRA 392 (404)
T ss_pred eEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEccee
Confidence 9999999986543322233457999999999999986 568899999999999999999999976444456799999999
Q ss_pred cC-CcccCcccC
Q 011615 437 IT-SRVTPQACE 447 (481)
Q Consensus 437 ~~-~~~~p~~c~ 447 (481)
.. +.+.|++|+
T Consensus 393 ~~~g~~~p~~C~ 404 (404)
T PLN02188 393 KYIGTQIPPPCP 404 (404)
T ss_pred EEcccCcCCCCC
Confidence 77 578888885
No 4
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=6.2e-75 Score=590.01 Aligned_cols=361 Identities=26% Similarity=0.449 Sum_probs=315.3
Q ss_pred ccceEEEEeecCccCCCccchHHHHHHHHHHhhhcccCCCcEEEeCCCc-ceeeeEEeccce---eEEEccCcEEEecCC
Q 011615 52 CRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGK-WLTGSFNLTSHF---TLYIHKDALLLASQD 127 (481)
Q Consensus 52 ~~~~~~nV~dyGA~gDG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~-Yl~~~i~l~s~~---~l~l~~ga~i~~~~~ 127 (481)
.++.+|||++|||+|||++|||+|||+||++||. +.++++|+||+|+ |+++++.|+++. .+.++..|+|+++..
T Consensus 19 ~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~--~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~ 96 (456)
T PLN03003 19 TSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCS--GTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK 96 (456)
T ss_pred eeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhh--ccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc
Confidence 3456899999999999999999999999999764 2578999999995 899999998753 366778899988653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceeeEEEeceeceEEEccceeeeCCCchhhhhccccCCCCCCCeeEEEEeeccEEEE
Q 011615 128 ESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQIS 207 (481)
Q Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~G~idG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~ 207 (481)
..|.. ....||.+.++++++|+|. |+|||+|+.||+.. ..||+++.|.+|+|++|+
T Consensus 97 -~~w~~----------------~~~~wI~f~~~~~i~I~G~-GtIDGqG~~wW~~~------~~rP~~l~f~~~~nv~I~ 152 (456)
T PLN03003 97 -GNWKG----------------DKDQWILFTDIEGLVIEGD-GEINGQGSSWWEHK------GSRPTALKFRSCNNLRLS 152 (456)
T ss_pred -ccccC----------------CCcceEEEEcccceEEecc-ceEeCCchhhhhcc------cCCceEEEEEecCCcEEe
Confidence 34531 1135999999999999996 99999999999752 368999999999999999
Q ss_pred eeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceee
Q 011615 208 NLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQH 287 (481)
Q Consensus 208 g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~n 287 (481)
|++++|||+||+++..|++|+|++++|.++..++|+||||+.+|+||+|+||.|.+|||||+||++ ++|
T Consensus 153 gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksg-----------s~N 221 (456)
T PLN03003 153 GLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSN 221 (456)
T ss_pred CeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCC-----------Ccc
Confidence 999999999999999999999999999999889999999999999999999999999999999998 899
Q ss_pred EEEEEEEEeCCCCceEEeccCcC----CCEEEEEEEeeEEEcCCceEEEEeecCCCceeecEEEEeeEEccceeeEEEEc
Q 011615 288 LIIRRLICISPDSAAIALGSEMS----GGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFWMTG 363 (481)
Q Consensus 288 I~I~n~~~~~~~~~gisIGs~~~----~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~f~ni~~~~~~~~i~i~~ 363 (481)
|+|+||+|.+ +|||+|||++. +.|+||+|+||+|.++.+|+|||||+|++|+|+||+|+||+|+++.+||.|+|
T Consensus 222 I~I~n~~c~~--GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq 299 (456)
T PLN03003 222 IHISGIDCGP--GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQ 299 (456)
T ss_pred EEEEeeEEEC--CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEc
Confidence 9999999997 78999999864 45999999999999999999999999989999999999999999999999999
Q ss_pred ccCCCC-CCCC-CCCCCCeEEeEEEEEEEEEcc-CeeEEEeccCCCCeeeEEEEeEEEEecC--CCCccceEEeeeeccC
Q 011615 364 DYGSHP-DPGF-DPKALPTVTGINYRDMVADNV-TQSAKLDGIRNDPFTGICISNVTIKLTE--KPKELQWNCTNIQGIT 438 (481)
Q Consensus 364 ~y~~~~-~~~~-~~~~~~~i~nItf~nI~~~~~-~~~~~l~g~~~~~~~~I~~~ni~i~~~~--~~~~~~~~c~nv~g~~ 438 (481)
+|++.. ...+ .+...+.|+||+|+||+|+.. +.++.|.|+++.||+||+|+||+|+... .+....++|.||+|..
T Consensus 300 ~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~ 379 (456)
T PLN03003 300 FYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGAS 379 (456)
T ss_pred ccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEecccccc
Confidence 998532 2111 233458999999999999876 5688999999999999999999999762 2335689999999987
Q ss_pred Cccc-CcccCCCCC
Q 011615 439 SRVT-PQACELLPK 451 (481)
Q Consensus 439 ~~~~-p~~c~~~~~ 451 (481)
..+. |++|+++..
T Consensus 380 ~~~~~~~~C~~~~~ 393 (456)
T PLN03003 380 TIAVPGLECLELST 393 (456)
T ss_pred CceECCCCccccCC
Confidence 5554 458998543
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=4.3e-74 Score=581.09 Aligned_cols=348 Identities=23% Similarity=0.402 Sum_probs=310.1
Q ss_pred cceEEEEeecCccCCCccchHHHHHHHHHHhhhcccCC--CcEEEeCCC-cceeeeEEecc-----ceeEEEccCcEEEe
Q 011615 53 RKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADG--GAQLIVPPG-KWLTGSFNLTS-----HFTLYIHKDALLLA 124 (481)
Q Consensus 53 ~~~~~nV~dyGA~gDG~tDdt~Aiq~Ai~~a~~~~~~~--g~~v~iP~G-~Yl~~~i~l~s-----~~~l~l~~ga~i~~ 124 (481)
++.+|||+||||+|||++|||+|||+||++||. .+ +++|+||+| +|++++|.|++ +++|++ +|+|++
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~---~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l--~G~l~~ 117 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCG---GEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQL--DGIIVA 117 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHcc---CCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEE--ccEEEc
Confidence 346899999999999999999999999998764 23 379999999 79999999996 466655 589999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCceeeEEEeceeceEEEccceeeeCCCchhhhhccccCCCCCCCeeEEEEeeccE
Q 011615 125 SQDESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNV 204 (481)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~G~idG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv 204 (481)
+.++.+|+... ...|+.+.+++|++|+|. |+|||+|+.||. ++.|.+|+|+
T Consensus 118 ~~d~~~w~~~~---------------~~~wi~f~~v~nv~I~G~-G~IDG~G~~ww~-------------~l~~~~~~nv 168 (409)
T PLN03010 118 PSNIVAWSNPK---------------SQMWISFSTVSGLMIDGS-GTIDGRGSSFWE-------------ALHISKCDNL 168 (409)
T ss_pred cCChhhccCCC---------------CcceEEEecccccEEeec-eEEeCCCccccc-------------eEEEEeecCe
Confidence 99998885321 135899999999999996 999999999995 5899999999
Q ss_pred EEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCc
Q 011615 205 QISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMP 284 (481)
Q Consensus 205 ~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~ 284 (481)
+|+|++++|+|+|++++..|++|+|++++|.++..++|+||||+.+|+||+|+||+|.+|||||++|++
T Consensus 169 ~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksg----------- 237 (409)
T PLN03010 169 TINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG----------- 237 (409)
T ss_pred EEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCC-----------
Confidence 999999999999999999999999999999999888999999999999999999999999999999997
Q ss_pred eeeEEEEEEEEeCCCCceEEeccCcCC----CEEEEEEEeeEEEcCCceEEEEeecCCCceeecEEEEeeEEccceeeEE
Q 011615 285 TQHLIIRRLICISPDSAAIALGSEMSG----GIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFW 360 (481)
Q Consensus 285 s~nI~I~n~~~~~~~~~gisIGs~~~~----~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~f~ni~~~~~~~~i~ 360 (481)
++|+.|+++.|.+ +|||+|||++.+ .|+||+|+||+|.++.+|+|||||+|++|.|+||+|+||+|+++++||.
T Consensus 238 s~ni~I~~~~C~~--gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~ 315 (409)
T PLN03010 238 SSNINITQINCGP--GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPII 315 (409)
T ss_pred CCcEEEEEEEeEC--cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEE
Confidence 7899999999986 789999999654 4999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCCCCCCCCCCCeEEeEEEEEEEEEcc-CeeEEEeccCCCCeeeEEEEeEEEEecCCCCccceEEeeeeccC-
Q 011615 361 MTGDYGSHPDPGFDPKALPTVTGINYRDMVADNV-TQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQGIT- 438 (481)
Q Consensus 361 i~~~y~~~~~~~~~~~~~~~i~nItf~nI~~~~~-~~~~~l~g~~~~~~~~I~~~ni~i~~~~~~~~~~~~c~nv~g~~- 438 (481)
|+|.|++....+..+...+.|+||+|+||+++.. ..++.|.|++..||+||+|+||+++... +..+.+.|.|+.+.+
T Consensus 316 I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~-g~~~~~~C~nv~g~~~ 394 (409)
T PLN03010 316 IDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMEN-GEKPKVECQNVEGESS 394 (409)
T ss_pred EEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecC-CCccceEeeCcccccc
Confidence 9999986443333345568999999999999866 5789999999999999999999999763 335689999999976
Q ss_pred CcccCcccCC
Q 011615 439 SRVTPQACEL 448 (481)
Q Consensus 439 ~~~~p~~c~~ 448 (481)
+.+.|++|++
T Consensus 395 ~~~~~~~C~~ 404 (409)
T PLN03010 395 DTDLMRDCFK 404 (409)
T ss_pred CCCCCCcccc
Confidence 5677888984
No 6
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.8e-74 Score=589.14 Aligned_cols=355 Identities=28% Similarity=0.468 Sum_probs=313.7
Q ss_pred ccceEEEEeecCccCCCccchHHHHHHHHHHhhhcccCCCcEEEeCCC-cceeeeEEec----cceeEEEccCcEEEecC
Q 011615 52 CRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPG-KWLTGSFNLT----SHFTLYIHKDALLLASQ 126 (481)
Q Consensus 52 ~~~~~~nV~dyGA~gDG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G-~Yl~~~i~l~----s~~~l~l~~ga~i~~~~ 126 (481)
.++.++||+||||+|||++|||+|||+||++||+ +.++++|+||+| +|+++++.|+ ++++|++ +|+|+++.
T Consensus 63 ~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs--~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l--~g~L~~s~ 138 (431)
T PLN02218 63 RTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACS--SNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQI--FGTLSASQ 138 (431)
T ss_pred CCCcEEEeeecccCCCCCcccHHHHHHHHHHhhh--cCCCcEEEECCCCeEEEeeeEecCccCCceEEEE--EEEEEeCC
Confidence 4578999999999999999999999999975553 157789999999 5999999996 5666655 79999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCceeeEEEeceeceEEEcc-ceeeeCCCchhhhhcccc---CCCCCCCeeEEEEeec
Q 011615 127 DESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGG-NATINGQGEPWWIKYRKK---QFNVTRPYLIEVMFSD 202 (481)
Q Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~-~G~idG~g~~ww~~~~~~---~~~~~rp~~i~~~~~~ 202 (481)
++.+|+. ...||.+.+++||+|+|. .|+|||+|+.||+..... .....||+++.|.+|+
T Consensus 139 d~~~y~~-----------------~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~ 201 (431)
T PLN02218 139 KRSDYKD-----------------ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSK 201 (431)
T ss_pred Chhhccc-----------------cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccc
Confidence 9988853 135899999999999994 399999999999754221 1234699999999999
Q ss_pred cEEEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccC
Q 011615 203 NVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVG 282 (481)
Q Consensus 203 nv~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~ 282 (481)
|++|+|++++|+|+|++++..|+||+|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||+||++
T Consensus 202 nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksg--------- 272 (431)
T PLN02218 202 SLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESG--------- 272 (431)
T ss_pred cEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCC---------
Confidence 99999999999999999999999999999999999889999999999999999999999999999999998
Q ss_pred CceeeEEEEEEEEeCCCCceEEeccCcC----CCEEEEEEEeeEEEcCCceEEEEeecCCCceeecEEEEeeEEccceee
Q 011615 283 MPTQHLIIRRLICISPDSAAIALGSEMS----GGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYV 358 (481)
Q Consensus 283 ~~s~nI~I~n~~~~~~~~~gisIGs~~~----~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~f~ni~~~~~~~~ 358 (481)
++||+|+||+|.+ +|||+|||++. +.|+||+|+||+|.++.+|+|||||+|++|.|+||+|+||+|+++++|
T Consensus 273 --s~nI~I~n~~c~~--GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~p 348 (431)
T PLN02218 273 --SQNVQINDITCGP--GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNP 348 (431)
T ss_pred --CceEEEEeEEEEC--CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEccccc
Confidence 8999999999987 78999999873 579999999999999999999999999999999999999999999999
Q ss_pred EEEEcccCCCCCCCCCCCCCCeEEeEEEEEEEEEcc-CeeEEEeccCCCCeeeEEEEeEEEEecCCCCccceEEeeeecc
Q 011615 359 FWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNV-TQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQGI 437 (481)
Q Consensus 359 i~i~~~y~~~~~~~~~~~~~~~i~nItf~nI~~~~~-~~~~~l~g~~~~~~~~I~~~ni~i~~~~~~~~~~~~c~nv~g~ 437 (481)
|+|++.|++...+.. +...+.|+||+|+||+++.+ ..++.|.|+++.||+||+|+||+++.. ...|.||.+.
T Consensus 349 I~Idq~Y~~~~~~~~-~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~------~~~c~n~~~~ 421 (431)
T PLN02218 349 IIIDQDYCDKSKCTS-QQSAVQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG------KATCTNANVV 421 (431)
T ss_pred EEEEeeccCCCCCCC-CCCCeEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC------eeeEEEeeEE
Confidence 999999987544332 23457999999999999977 578899999999999999999999742 4689999998
Q ss_pred CCcccCcccC
Q 011615 438 TSRVTPQACE 447 (481)
Q Consensus 438 ~~~~~p~~c~ 447 (481)
..++.|+.|.
T Consensus 422 ~~~~~~p~c~ 431 (431)
T PLN02218 422 DKGAVSPQCN 431 (431)
T ss_pred EcccCCCCCC
Confidence 8666666884
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=2.5e-56 Score=446.62 Aligned_cols=309 Identities=35% Similarity=0.598 Sum_probs=262.4
Q ss_pred CCCcEEEeCCCcceeeeEEec----cceeEEEccCcEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceeeEEEeceeceE
Q 011615 89 DGGAQLIVPPGKWLTGSFNLT----SHFTLYIHKDALLLASQDESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVV 164 (481)
Q Consensus 89 ~~g~~v~iP~G~Yl~~~i~l~----s~~~l~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~ 164 (481)
.++++|+||+|+|+++++.|+ ++.++.| .|++.++.....++ . ..||++.+++|++
T Consensus 4 ~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l--~G~~~~~~~~~~~~-----------------~-~~~i~~~~~~ni~ 63 (326)
T PF00295_consen 4 IGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTL--DGTINFSYDNWEGP-----------------N-SALIYAENAENIT 63 (326)
T ss_dssp EEEESEEESTSTEEEEETSEETECETTCEEEE--ESEEEEG-EESTSE-------------------SEEEEEESEEEEE
T ss_pred CcCCEEEECCCCeEEceeEEEcccCCCeEEEE--EEEEEeCCCcccCC-----------------c-cEEEEEEceEEEE
Confidence 467899999999999999998 4556655 35666553222221 1 4799999999999
Q ss_pred EEccceeeeCCCchhhhhccc-cCCCCCCCeeEEEEeeccEEEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCC
Q 011615 165 VTGGNATINGQGEPWWIKYRK-KQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNT 243 (481)
Q Consensus 165 I~G~~G~idG~g~~ww~~~~~-~~~~~~rp~~i~~~~~~nv~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~ 243 (481)
|+|. |+|||+|+.||+.... ......||+++.|.+|+|++|+|++++|+|+|++++..|+||+|++++|.++...+|+
T Consensus 64 i~G~-G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~Nt 142 (326)
T PF00295_consen 64 ITGK-GTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNT 142 (326)
T ss_dssp CTTS-SEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS-
T ss_pred ecCC-ceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCc
Confidence 9996 9999999999986543 1345679999999999999999999999999999999999999999999998878999
Q ss_pred CCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCC----CEEEEEEE
Q 011615 244 DGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSG----GIKDVRAE 319 (481)
Q Consensus 244 DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~----~v~nI~v~ 319 (481)
||||+.+|+||+|+||+|.++||||++|++ ..||+|+||+|.+ +||++|||+..+ .|+||+|+
T Consensus 143 DGid~~~s~nv~I~n~~i~~gDD~Iaiks~-----------~~ni~v~n~~~~~--ghGisiGS~~~~~~~~~i~nV~~~ 209 (326)
T PF00295_consen 143 DGIDIDSSKNVTIENCFIDNGDDCIAIKSG-----------SGNILVENCTCSG--GHGISIGSEGSGGSQNDIRNVTFE 209 (326)
T ss_dssp -SEEEESEEEEEEESEEEESSSESEEESSE-----------ECEEEEESEEEES--SSEEEEEEESSSSE--EEEEEEEE
T ss_pred ceEEEEeeeEEEEEEeecccccCccccccc-----------ccceEEEeEEEec--cccceeeeccCCccccEEEeEEEE
Confidence 999999999999999999999999999997 5699999999997 789999999765 48999999
Q ss_pred eeEEEcCCceEEEEeecCCCceeecEEEEeeEEccceeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEEEEEEccC-eeE
Q 011615 320 DITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVT-QSA 398 (481)
Q Consensus 320 n~~~~~~~~Gi~Ikt~~g~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nItf~nI~~~~~~-~~~ 398 (481)
||+|.++.+|++||++++++|.|+||+|+||+|+++.+||.|++.|.....+ ..+...+.|+||+|+||+++... .++
T Consensus 210 n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~-~~~~~~~~i~nI~~~nitg~~~~~~~i 288 (326)
T PF00295_consen 210 NCTIINTDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGPC-GKPPSGVSISNITFRNITGTSAGSSAI 288 (326)
T ss_dssp EEEEESESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEES-SCSSSSSEEEEEEEEEEEEEESTSEEE
T ss_pred EEEeeccceEEEEEEecccceEEeceEEEEEEecCCceEEEEEecccccccc-CcccCCceEEEEEEEeeEEEeccceEE
Confidence 9999999999999999998999999999999999999999999999862222 12334579999999999999885 789
Q ss_pred EEeccCCCCeeeEEEEeEEEEecCCCCccceEEeeeec
Q 011615 399 KLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQG 436 (481)
Q Consensus 399 ~l~g~~~~~~~~I~~~ni~i~~~~~~~~~~~~c~nv~g 436 (481)
.|.|.++.||+||+|+||+|+. + ...+.|.|+..
T Consensus 289 ~i~~~~~~~~~ni~f~nv~i~~-g---~~~~~c~nv~~ 322 (326)
T PF00295_consen 289 SIDCSPGSPCSNITFENVNITG-G---KKPAQCKNVPS 322 (326)
T ss_dssp EEE-BTTSSEEEEEEEEEEEES-S---BSESEEBSCCT
T ss_pred EEEECCcCcEEeEEEEeEEEEc-C---CcCeEEECCCC
Confidence 9999999999999999999996 2 56688988875
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.3e-47 Score=391.90 Aligned_cols=303 Identities=34% Similarity=0.557 Sum_probs=256.0
Q ss_pred cccceEEEEeecCccCCCccchHHHHHHHHHHhhhcccCCCcEEEeCCCcceeeeEEeccceeEEEccCcEEEecCCCCC
Q 011615 51 NCRKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQDESE 130 (481)
Q Consensus 51 ~~~~~~~nV~dyGA~gDG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl~~~i~l~s~~~l~l~~ga~i~~~~~~~~ 130 (481)
......++|.+|||+|||.+|+++|||+||++|.+ .+|++|+||+|+|+.++|+|||+++|++++|++|+++.++.+
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca~---a~Gg~V~lPaGtylsg~l~LKS~~~L~l~egatl~~~~~p~~ 153 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAIDACAS---AGGGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLASSNPKD 153 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHHHhhhh---hcCceEEECCceeEeeeEEEecccEEEecCCceeeCCCChhh
Confidence 34456899999999999999999999999999986 689999999999999999999999999999999999999999
Q ss_pred CCC--------CCC-C---C-----CCCCCCCCCCCCceeeEEEeceeceE-EEccceeeeCCC----chhhhhcc--cc
Q 011615 131 WPL--------LPP-L---P-----SYGRGRDEPGGRFSSLIFGTNLTDVV-VTGGNATINGQG----EPWWIKYR--KK 186 (481)
Q Consensus 131 ~~~--------~~~-~---~-----~~~~g~~~~~~~~~~~i~~~~~~ni~-I~G~~G~idG~g----~~ww~~~~--~~ 186 (481)
|+. ..+ + + .+++| +... ...++.....+|.. |.|. |+++|++ ..||.... ..
T Consensus 154 y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g--~~d~-~~~~~~~~~~~n~~~i~g~-~~i~g~~~~~g~~~~~~~g~~~~ 229 (542)
T COG5434 154 YPSFTSRFNGNSGPYVYATDSDNAMISGEG--LADG-KADLLIAGNSSNRKEIWGK-GTIDGNGYKRGDKWFSGLGAVET 229 (542)
T ss_pred ccccccccccccCcceeeecccCceeeeec--cccc-CcccceeccCCceEEEecc-ceecCccccchhhhhhcccchhh
Confidence 983 111 0 0 01111 1111 23344445556666 8896 9999975 22775433 11
Q ss_pred CCCC--CCCeeEEEEeeccEEEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecC
Q 011615 187 QFNV--TRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSG 264 (481)
Q Consensus 187 ~~~~--~rp~~i~~~~~~nv~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~g 264 (481)
+... .||..+.+..|.||+++|++|.|++.|++++..|+|++++|++|.+.... |+|||++.+|+||+|++|+|.+|
T Consensus 230 ~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtg 308 (542)
T COG5434 230 RIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTG 308 (542)
T ss_pred cccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecC
Confidence 1122 68999999999999999999999999999999999999999999998754 99999999999999999999999
Q ss_pred CceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCCceEEEEeecCCCceeec
Q 011615 265 DDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKE 344 (481)
Q Consensus 265 DD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~n 344 (481)
||||++|++....+.+...|++||.|+||++..+ ..++.+|||+.++|+||++|||.|.++.+||||||..+++|.++|
T Consensus 309 DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~g-hG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~gG~v~n 387 (542)
T COG5434 309 DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSG-HGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRGGGVRN 387 (542)
T ss_pred CceEEeecccCCcccccccccccEEEecceeccc-ccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccceeEEE
Confidence 9999999998777666778999999999999975 357888999999999999999999999999999999999999999
Q ss_pred EEEEeeEEccceeeEEEE
Q 011615 345 IYVRRMTMKTMKYVFWMT 362 (481)
Q Consensus 345 I~f~ni~~~~~~~~i~i~ 362 (481)
|+|+++.|.++..+..|.
T Consensus 388 I~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 388 IVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred EEEecccccCcccceeee
Confidence 999999999986544443
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.95 E-value=4.1e-26 Score=228.37 Aligned_cols=175 Identities=22% Similarity=0.251 Sum_probs=135.5
Q ss_pred cceEEEEeecCccCCCccchHHHHHHHHHHhhhcccCCCcEEEeCCCcceeeeEEeccceeEEEccCcEEEecCCCCCCC
Q 011615 53 RKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQDESEWP 132 (481)
Q Consensus 53 ~~~~~nV~dyGA~gDG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl~~~i~l~s~~~l~l~~ga~i~~~~~~~~~~ 132 (481)
+...+|+++|||++||.+|+|+|||+||++|.+ ++++|++|+|+|+.+++.|+++++|+.+.+++.+.-+.
T Consensus 34 p~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa~----gG~tV~Lp~G~Y~~G~L~L~spltL~G~~gAt~~vIdG----- 104 (455)
T TIGR03808 34 STLGRDATQYGVRPNSPDDQTRALQRAIDEAAR----AQTPLALPPGVYRTGPLRLPSGAQLIGVRGATRLVFTG----- 104 (455)
T ss_pred CccCCCHHHcCcCCCCcchHHHHHHHHHHHhhc----CCCEEEECCCceecccEEECCCcEEEecCCcEEEEEcC-----
Confidence 344589999999999999999999999999863 67899999999999999999999999998887321110
Q ss_pred CCCCCCCCCCCCCCCCCCceeeEEEeceeceEEEccceeeeCCCchhhhhccccCCCCCCCeeEEEEeeccEEEEeeEEe
Q 011615 133 LLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLI 212 (481)
Q Consensus 133 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~~G~idG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~g~~i~ 212 (481)
..+++.....++|+|+| -+|+|+|..| ..++.+|.+..|++++|++++|.
T Consensus 105 ------------------~~~lIiai~A~nVTIsG--LtIdGsG~dl----------~~rdAgI~v~~a~~v~Iedn~L~ 154 (455)
T TIGR03808 105 ------------------GPSLLSSEGADGIGLSG--LTLDGGGIPL----------PQRRGLIHCQGGRDVRITDCEIT 154 (455)
T ss_pred ------------------CceEEEEecCCCeEEEe--eEEEeCCCcc----------cCCCCEEEEccCCceEEEeeEEE
Confidence 02567778899999999 4999999754 24788999999999999999999
Q ss_pred eCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEec-CCceeeec
Q 011615 213 DSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVS-GDDCVAVK 271 (481)
Q Consensus 213 ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~-gDD~iai~ 271 (481)
++..|++.++.|+ ..|.+.+|... ...+|+++.+++++|++++|.. .|++|.+.
T Consensus 155 gsg~FGI~L~~~~-~~I~~N~I~g~----~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~ 209 (455)
T TIGR03808 155 GSGGNGIWLETVS-GDISGNTITQI----AVTAIVSFDALGLIVARNTIIGANDNGIEIL 209 (455)
T ss_pred cCCcceEEEEcCc-ceEecceEecc----ccceEEEeccCCCEEECCEEEccCCCCeEEE
Confidence 9999999999999 55555555442 2333666666666666666554 34444443
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.87 E-value=8.3e-21 Score=180.33 Aligned_cols=212 Identities=22% Similarity=0.274 Sum_probs=121.9
Q ss_pred EEEEeecCccCCCccchHHHHHHHHHHhhhcccCCCcEEEeCCCcceee-eEEeccceeEEEccC-cEEEecC-CCCCCC
Q 011615 56 SAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTG-SFNLTSHFTLYIHKD-ALLLASQ-DESEWP 132 (481)
Q Consensus 56 ~~nV~dyGA~gDG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl~~-~i~l~s~~~l~l~~g-a~i~~~~-~~~~~~ 132 (481)
.+||++|||+|||++|||+|||+||+++.. .++++|+||+|+|++. ++.++++++|+.+.. .+++... ....+.
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~---~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~ 77 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAA---AGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFS 77 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCS---TTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSC
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhccc---CCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccc
Confidence 479999999999999999999999966554 6899999999999877 599999999999765 3444322 211211
Q ss_pred CCCCCCCCCCCCCCCCCCceeeEEE--------eceeceEEEccceeeeCCCchhhhhccccCCCCCCCeeEEEEeeccE
Q 011615 133 LLPPLPSYGRGRDEPGGRFSSLIFG--------TNLTDVVVTGGNATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNV 204 (481)
Q Consensus 133 ~~~~~~~~~~g~~~~~~~~~~~i~~--------~~~~ni~I~G~~G~idG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv 204 (481)
. ......+ ..++|++|.| ++... ......+.+..++++
T Consensus 78 ~-----------------~~~~~~~~~~~~~~~~~i~nl~i~~-------~~~~~----------~~~~~~i~~~~~~~~ 123 (225)
T PF12708_consen 78 V-----------------VPGIGVFDSGNSNIGIQIRNLTIDG-------NGIDP----------NNNNNGIRFNSSQNV 123 (225)
T ss_dssp C-----------------EEEEEECCSCSCCEEEEEEEEEEEE-------TCGCE-----------SCEEEEEETTEEEE
T ss_pred c-----------------ccceeeeecCCCCceEEEEeeEEEc-------ccccC----------CCCceEEEEEeCCeE
Confidence 0 0011111 1134444444 33211 011356778888888
Q ss_pred EEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCC-CccEEEEecEEecCCceeeecCCCCccCcccCC
Q 011615 205 QISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDS-CTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGM 283 (481)
Q Consensus 205 ~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~-s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~ 283 (481)
+|+++++.++...++.+..+....+.+..... ++.+.. +.++.+.++.+..+++++. .+
T Consensus 124 ~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~--~~---------- 183 (225)
T PF12708_consen 124 SISNVRIENSGGDGIYFNTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGII--LG---------- 183 (225)
T ss_dssp EEEEEEEES-SS-SEEEECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEE--CE----------
T ss_pred EEEeEEEEccCccEEEEEccccCcEeecccce--------eeeeccceeEEEECCccccCCCceeE--ee----------
Confidence 88888888887777777755544443322210 122221 2445556666666666521 11
Q ss_pred ceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCCceE
Q 011615 284 PTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGV 330 (481)
Q Consensus 284 ~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~Gi 330 (481)
.+++.|+||.+......||.+-... ++.|+|++|.++..|+
T Consensus 184 -~~~~~i~n~~~~~~~~~gi~i~~~~-----~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 184 -NNNITISNNTFEGNCGNGINIEGGS-----NIIISNNTIENCDDGI 224 (225)
T ss_dssp -EEEEEEECEEEESSSSESEEEEECS-----EEEEEEEEEESSSEEE
T ss_pred -cceEEEEeEEECCccceeEEEECCe-----EEEEEeEEEECCccCc
Confidence 3566666666665335566554322 3566666666655554
No 11
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.86 E-value=3.2e-19 Score=182.49 Aligned_cols=244 Identities=16% Similarity=0.149 Sum_probs=184.0
Q ss_pred eeEEEEeeccEEEEeeEEeeCC---CC--------eEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEe
Q 011615 194 YLIEVMFSDNVQISNLTLIDSP---SW--------NVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIV 262 (481)
Q Consensus 194 ~~i~~~~~~nv~I~g~~i~ns~---~~--------~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~ 262 (481)
..|.|.++++++|.|--..+.. .| .+.+..|+|+.|+++++.+++. .-+++..|++|+|++.+|.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~----w~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPM----AHIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCc----EEEEEeccccEEEEEEEEe
Confidence 4799999999999996665543 23 4789999999999999998652 3488899999999999998
Q ss_pred cC-----CceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCCceEEEEeecC
Q 011615 263 SG-----DDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVG 337 (481)
Q Consensus 263 ~g-----DD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g 337 (481)
+. -|+|.+.+ ++||+|+||++..+ +++|+|++. .+||+|+||++.. .+||.|.+...
T Consensus 181 ap~~spNTDGIDi~~------------S~nV~I~n~~I~tG-DDCIaiksg----s~NI~I~n~~c~~-GHGISIGSlg~ 242 (456)
T PLN03003 181 APESSPNTDGIDVGA------------SSNVVIQDCIIATG-DDCIAINSG----TSNIHISGIDCGP-GHGISIGSLGK 242 (456)
T ss_pred CCCCCCCCCcEeecC------------cceEEEEecEEecC-CCeEEeCCC----CccEEEEeeEEEC-CCCeEEeeccC
Confidence 73 46777765 89999999999997 899999874 5799999999975 48999998643
Q ss_pred C--CceeecEEEEeeEEccceeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEEEEEEccCeeEEEeccC-----------
Q 011615 338 R--GAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLDGIR----------- 404 (481)
Q Consensus 338 ~--~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nItf~nI~~~~~~~~~~l~g~~----------- 404 (481)
. .+.|+||+|+|+++.+..+++.|+.+.+ +.+.++||+|+||.+.++..|+.|....
T Consensus 243 ~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~ 312 (456)
T PLN03003 243 DGETATVENVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDR 312 (456)
T ss_pred CCCcceEEEEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccC
Confidence 2 2579999999999999999999998733 2368999999999999998888773211
Q ss_pred ---CCCeeeEEEEeEEEEecCCCCccceE------EeeeeccCCcc----------cCcccCCCCCCCCCCCCC-CCCCC
Q 011615 405 ---NDPFTGICISNVTIKLTEKPKELQWN------CTNIQGITSRV----------TPQACELLPKKEPTDCFF-PDDKL 464 (481)
Q Consensus 405 ---~~~~~~I~~~ni~i~~~~~~~~~~~~------c~nv~g~~~~~----------~p~~c~~~~~~~~~~~~~-~~~~~ 464 (481)
...++||+|+||+.+... .....+. |.|+.-...++ ....|.+........|+. +|+.+
T Consensus 313 ~~s~v~IsnI~f~NI~GTs~~-~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~~ 391 (456)
T PLN03003 313 KSSAVEVSKVVFSNFIGTSKS-EYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLEL 391 (456)
T ss_pred CCCCcEEEeEEEEeEEEEeCc-cceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCcccc
Confidence 135899999999987642 2223333 44443221111 124488876666566654 67776
Q ss_pred Ccccee
Q 011615 465 PIDDVR 470 (481)
Q Consensus 465 ~~~~~~ 470 (481)
..+++.
T Consensus 392 ~~~~~~ 397 (456)
T PLN03003 392 STDMFS 397 (456)
T ss_pred CCCccc
Confidence 666543
No 12
>PLN02218 polygalacturonase ADPG
Probab=99.83 E-value=5.5e-19 Score=181.32 Aligned_cols=196 Identities=16% Similarity=0.224 Sum_probs=158.6
Q ss_pred eeEEEEeeccEEEEe---eEEeeCC--CC-----------------eEEeeccccEEEEeEEEECCCCCCCCCCcCCCCC
Q 011615 194 YLIEVMFSDNVQISN---LTLIDSP--SW-----------------NVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSC 251 (481)
Q Consensus 194 ~~i~~~~~~nv~I~g---~~i~ns~--~~-----------------~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s 251 (481)
..|.+.+.+|++|.| =+|.... .| .+.+.+|+|++|+++++.+++. .-+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~----w~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQ----IQISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCC----EEEEEEce
Confidence 358889999999998 3332211 12 3678899999999999999652 34889999
Q ss_pred ccEEEEecEEec-----CCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcC
Q 011615 252 TNTRIEDNYIVS-----GDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINT 326 (481)
Q Consensus 252 ~nV~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~ 326 (481)
+||+|++.+|.+ .-|+|.+.+ ++||+|+||++..+ +++|+|++. .+||+|+||++..
T Consensus 224 ~nV~i~~v~I~a~~~spNTDGIdi~s------------s~nV~I~n~~I~tG-DDcIaIksg----s~nI~I~n~~c~~- 285 (431)
T PLN02218 224 SNVQVSNVVVTAPADSPNTDGIHITN------------TQNIRVSNSIIGTG-DDCISIESG----SQNVQINDITCGP- 285 (431)
T ss_pred eeEEEEEEEEeCCCCCCCCCcEeecc------------cceEEEEccEEecC-CceEEecCC----CceEEEEeEEEEC-
Confidence 999999999986 357777765 89999999999986 899999874 6799999999965
Q ss_pred CceEEEEeecCC--CceeecEEEEeeEEccceeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEEEEEEccCeeEEEecc-
Q 011615 327 QSGVRIKTAVGR--GAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLDGI- 403 (481)
Q Consensus 327 ~~Gi~Ikt~~g~--~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nItf~nI~~~~~~~~~~l~g~- 403 (481)
.+|+.|.+.... .+.|+||+|+|+++.+..++++|+.+.+ +.+.++||+|+||++.++..|+.|...
T Consensus 286 GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G----------g~G~v~nI~f~ni~m~~V~~pI~Idq~Y 355 (431)
T PLN02218 286 GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG----------GSGTASNIIFQNIQMENVKNPIIIDQDY 355 (431)
T ss_pred CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCC----------CCeEEEEEEEEeEEEEcccccEEEEeec
Confidence 589999886422 3689999999999999999999998732 336999999999999999888876421
Q ss_pred ----------CCCCeeeEEEEeEEEEec
Q 011615 404 ----------RNDPFTGICISNVTIKLT 421 (481)
Q Consensus 404 ----------~~~~~~~I~~~ni~i~~~ 421 (481)
....++||+|+||+.+.+
T Consensus 356 ~~~~~~~~~~s~v~I~nI~~~NI~gtsa 383 (431)
T PLN02218 356 CDKSKCTSQQSAVQVKNVVYRNISGTSA 383 (431)
T ss_pred cCCCCCCCCCCCeEEEEEEEEeEEEEec
Confidence 113489999999999865
No 13
>PLN03010 polygalacturonase
Probab=99.83 E-value=4.5e-18 Score=173.08 Aligned_cols=205 Identities=15% Similarity=0.190 Sum_probs=162.2
Q ss_pred eeEEEEeeccEEEEeeEEeeCC---CC-eEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEec-----C
Q 011615 194 YLIEVMFSDNVQISNLTLIDSP---SW-NVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVS-----G 264 (481)
Q Consensus 194 ~~i~~~~~~nv~I~g~~i~ns~---~~-~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~-----g 264 (481)
..+.|.+.+|+.|.|--..+.. .| .+.+..|+|++|+++++.+++ ..-+++..|++|+|++.+|.+ .
T Consensus 131 ~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp----~~~i~i~~~~nv~i~~i~I~a~~~s~N 206 (409)
T PLN03010 131 MWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSP----KNHISIKTCNYVAISKINILAPETSPN 206 (409)
T ss_pred ceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCC----ceEEEEeccccEEEEEEEEeCCCCCCC
Confidence 3578999999999997777653 34 488999999999999999965 234888899999999999986 3
Q ss_pred CceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCCceEEEEeecCC--Ccee
Q 011615 265 DDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGR--GAYV 342 (481)
Q Consensus 265 DD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~--~g~v 342 (481)
-|+|.+.+ ++||+|+||++..+ +++|+|++.. .++.|+++.+.. .+||.|.+.... ...|
T Consensus 207 TDGiDi~~------------s~nV~I~n~~I~~g-DDcIaiksgs----~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V 268 (409)
T PLN03010 207 TDGIDISY------------STNINIFDSTIQTG-DDCIAINSGS----SNINITQINCGP-GHGISVGSLGADGANAKV 268 (409)
T ss_pred CCceeeec------------cceEEEEeeEEecC-CCeEEecCCC----CcEEEEEEEeEC-cCCEEEccCCCCCCCCee
Confidence 46676655 89999999999997 8999999853 477888877765 479999886432 2469
Q ss_pred ecEEEEeeEEccceeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEEEEEEccCeeEEEe---ccCC---------CCeee
Q 011615 343 KEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLD---GIRN---------DPFTG 410 (481)
Q Consensus 343 ~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nItf~nI~~~~~~~~~~l~---g~~~---------~~~~~ 410 (481)
+||+|+|++|.+..++++|+.+.+ +.+.++||+|+||++++++.|+.|. +..+ ..++|
T Consensus 269 ~nV~v~n~~i~~t~~GirIKt~~G----------~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isd 338 (409)
T PLN03010 269 SDVHVTHCTFNQTTNGARIKTWQG----------GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISN 338 (409)
T ss_pred EEEEEEeeEEeCCCcceEEEEecC----------CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEe
Confidence 999999999999999999998743 2368999999999999998888773 2211 25799
Q ss_pred EEEEeEEEEecCCCCccceEE
Q 011615 411 ICISNVTIKLTEKPKELQWNC 431 (481)
Q Consensus 411 I~~~ni~i~~~~~~~~~~~~c 431 (481)
|+|+||+.+... .......|
T Consensus 339 i~~~ni~GT~~~-~~~i~l~C 358 (409)
T PLN03010 339 VKYVGFRGTTSN-ENAITLKC 358 (409)
T ss_pred EEEEeeEEEeCC-CccEEEEe
Confidence 999999998652 23334444
No 14
>PLN02793 Probable polygalacturonase
Probab=99.83 E-value=4.1e-18 Score=175.73 Aligned_cols=196 Identities=11% Similarity=0.167 Sum_probs=159.6
Q ss_pred eeEEEEeeccEEEEeeEEeeCCC---C-----------------eEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCcc
Q 011615 194 YLIEVMFSDNVQISNLTLIDSPS---W-----------------NVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTN 253 (481)
Q Consensus 194 ~~i~~~~~~nv~I~g~~i~ns~~---~-----------------~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~n 253 (481)
..|.+.+.+|++|.|--..+..+ | .+.+..|+|++|+++++.+++ ..-+++..|+|
T Consensus 135 ~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp----~~~i~~~~~~n 210 (443)
T PLN02793 135 KWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ----QMHIAFTNCRR 210 (443)
T ss_pred eEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC----CeEEEEEccCc
Confidence 47888899999999966655322 1 367889999999999999964 23488889999
Q ss_pred EEEEecEEec-----CCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCCc
Q 011615 254 TRIEDNYIVS-----GDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQS 328 (481)
Q Consensus 254 V~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~ 328 (481)
|+|++.+|.+ .-|+|.+.+ ++||+|+||++..+ +++|+|++ +.+||+|+||++... +
T Consensus 211 v~i~~l~I~~p~~spNTDGIdi~~------------s~nV~I~n~~I~~g-DDcIaik~----~s~nI~I~n~~c~~G-h 272 (443)
T PLN02793 211 VTISGLKVIAPATSPNTDGIHISA------------SRGVVIKDSIVRTG-DDCISIVG----NSSRIKIRNIACGPG-H 272 (443)
T ss_pred EEEEEEEEECCCCCCCCCcEeeec------------cceEEEEeCEEeCC-CCeEEecC----CcCCEEEEEeEEeCC-c
Confidence 9999999986 357787766 89999999999986 89999976 457999999999665 7
Q ss_pred eEEEEeecC--CCceeecEEEEeeEEccceeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEEEEEEccCeeEEEec---c
Q 011615 329 GVRIKTAVG--RGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLDG---I 403 (481)
Q Consensus 329 Gi~Ikt~~g--~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nItf~nI~~~~~~~~~~l~g---~ 403 (481)
||.|.+... ..+.|+||+|+|++|.+..+++.|+.+.+ +.+.++||+|+||+++++..|+.|.. .
T Consensus 273 GisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g----------~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~ 342 (443)
T PLN02793 273 GISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG----------GSGNASKITFQNIFMENVSNPIIIDQYYCD 342 (443)
T ss_pred cEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC----------CCEEEEEEEEEeEEEecCCceEEEEeeecC
Confidence 999988532 23679999999999999999999998743 23689999999999999988887743 2
Q ss_pred CC---------CCeeeEEEEeEEEEec
Q 011615 404 RN---------DPFTGICISNVTIKLT 421 (481)
Q Consensus 404 ~~---------~~~~~I~~~ni~i~~~ 421 (481)
.. ..++||+|+||+.+..
T Consensus 343 ~~~~~~~~ts~v~I~nI~~~nI~Gt~~ 369 (443)
T PLN02793 343 SRKPCANQTSAVKVENISFVHIKGTSA 369 (443)
T ss_pred CCCCCCCCCCCeEEEeEEEEEEEEEEc
Confidence 11 2489999999998864
No 15
>PLN02155 polygalacturonase
Probab=99.82 E-value=7.7e-18 Score=170.99 Aligned_cols=195 Identities=14% Similarity=0.177 Sum_probs=157.2
Q ss_pred eEEEEeeccEEEEeeEEeeCCC---C--------------eEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEE
Q 011615 195 LIEVMFSDNVQISNLTLIDSPS---W--------------NVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIE 257 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~~---~--------------~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~ 257 (481)
.+.+.+.+++.|.|=+| +..+ | .+.+..|++++|+++++.+++ ..-+++..|+||+|+
T Consensus 108 wi~~~~~~~i~i~GG~i-DGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp----~w~i~~~~~~nv~i~ 182 (394)
T PLN02155 108 WILFNKVNRFSLVGGTF-DARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQ----VSHMTLNGCTNVVVR 182 (394)
T ss_pred eEEEECcCCCEEEccEE-ecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCC----CeEEEEECeeeEEEE
Confidence 57889999999998444 3221 2 278899999999999999864 234888899999999
Q ss_pred ecEEecC-----CceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCCceEEE
Q 011615 258 DNYIVSG-----DDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRI 332 (481)
Q Consensus 258 n~~i~~g-----DD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~Gi~I 332 (481)
+.+|.+. -|+|.+.+ ++||+|+||++..+ +++|+|++. .+||+|+|+++... +|+.|
T Consensus 183 ~v~I~~p~~~~NtDGidi~~------------s~nV~I~~~~I~~g-DDcIaik~g----s~nI~I~n~~c~~G-hGisI 244 (394)
T PLN02155 183 NVKLVAPGNSPNTDGFHVQF------------STGVTFTGSTVQTG-DDCVAIGPG----TRNFLITKLACGPG-HGVSI 244 (394)
T ss_pred EEEEECCCCCCCCCcccccc------------ceeEEEEeeEEecC-CceEEcCCC----CceEEEEEEEEECC-ceEEe
Confidence 9999872 36666655 89999999999997 889999874 57999999999864 89999
Q ss_pred EeecC--CCceeecEEEEeeEEccceeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEEEEEEccCeeEEEe---ccC---
Q 011615 333 KTAVG--RGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLD---GIR--- 404 (481)
Q Consensus 333 kt~~g--~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nItf~nI~~~~~~~~~~l~---g~~--- 404 (481)
.+... ..+.|+||+++|+++.+..+++.|+.+.. .+.+.++||+|+||+++++..|+.|. |..
T Consensus 245 GS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~---------~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~ 315 (394)
T PLN02155 245 GSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR---------PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEG 315 (394)
T ss_pred ccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC---------CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCC
Confidence 98632 25789999999999999999999997632 12368999999999999998888773 210
Q ss_pred ------CCCeeeEEEEeEEEEec
Q 011615 405 ------NDPFTGICISNVTIKLT 421 (481)
Q Consensus 405 ------~~~~~~I~~~ni~i~~~ 421 (481)
...++||+|+||+.+.+
T Consensus 316 ~~~~~s~v~i~~It~~ni~gt~~ 338 (394)
T PLN02155 316 CPNEYSGVKISQVTYKNIQGTSA 338 (394)
T ss_pred CcCCCCCeEEEEEEEEeeEEEec
Confidence 13589999999999865
No 16
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.80 E-value=9.2e-18 Score=168.33 Aligned_cols=198 Identities=20% Similarity=0.238 Sum_probs=157.2
Q ss_pred CeeEEEEeeccEEEEeeEEeeCC---CC---------------eEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccE
Q 011615 193 PYLIEVMFSDNVQISNLTLIDSP---SW---------------NVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNT 254 (481)
Q Consensus 193 p~~i~~~~~~nv~I~g~~i~ns~---~~---------------~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV 254 (481)
..+|.+.+++|+.|.|--..+.. .| -+.+..|++++|+++++.+++ ...+++..|+||
T Consensus 51 ~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp----~w~~~~~~~~nv 126 (326)
T PF00295_consen 51 SALIYAENAENITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP----FWHIHINDCDNV 126 (326)
T ss_dssp SEEEEEESEEEEECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S----SESEEEESEEEE
T ss_pred cEEEEEEceEEEEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC----eeEEEEEccCCe
Confidence 45789999999999983333321 11 278899999999999999964 234888899999
Q ss_pred EEEecEEec-----CCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCCce
Q 011615 255 RIEDNYIVS-----GDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSG 329 (481)
Q Consensus 255 ~I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~G 329 (481)
+|++.+|.+ ..|+|.+.+ ++||+|+||++... +++|++++... ||+|+||++.+. +|
T Consensus 127 ~i~~i~I~~~~~~~NtDGid~~~------------s~nv~I~n~~i~~g-DD~Iaiks~~~----ni~v~n~~~~~g-hG 188 (326)
T PF00295_consen 127 TISNITINNPANSPNTDGIDIDS------------SKNVTIENCFIDNG-DDCIAIKSGSG----NILVENCTCSGG-HG 188 (326)
T ss_dssp EEESEEEEEGGGCTS--SEEEES------------EEEEEEESEEEESS-SESEEESSEEC----EEEEESEEEESS-SE
T ss_pred EEcceEEEecCCCCCcceEEEEe------------eeEEEEEEeecccc-cCccccccccc----ceEEEeEEEecc-cc
Confidence 999999986 257888766 89999999999986 89999987544 999999999764 78
Q ss_pred EEEEeecCCC--ceeecEEEEeeEEccceeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEEEEEEccCeeEEEec---c-
Q 011615 330 VRIKTAVGRG--AYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLDG---I- 403 (481)
Q Consensus 330 i~Ikt~~g~~--g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nItf~nI~~~~~~~~~~l~g---~- 403 (481)
+.|.+....+ ..|+||+|+|+++.+..+++.|+... .+.+.++||+|+||++++...|+.+.. .
T Consensus 189 isiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~----------~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~ 258 (326)
T PF00295_consen 189 ISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP----------GGGGYVSNITFENITMENVKYPIFIDQDYRDG 258 (326)
T ss_dssp EEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET----------TTSEEEEEEEEEEEEEEEESEEEEEEEEECTT
T ss_pred ceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec----------ccceEEeceEEEEEEecCCceEEEEEeccccc
Confidence 9999865322 36999999999999999999998863 233799999999999999988877642 1
Q ss_pred -------CCCCeeeEEEEeEEEEecC
Q 011615 404 -------RNDPFTGICISNVTIKLTE 422 (481)
Q Consensus 404 -------~~~~~~~I~~~ni~i~~~~ 422 (481)
....++||+|+||+.+...
T Consensus 259 ~~~~~~~~~~~i~nI~~~nitg~~~~ 284 (326)
T PF00295_consen 259 GPCGKPPSGVSISNITFRNITGTSAG 284 (326)
T ss_dssp EESSCSSSSSEEEEEEEEEEEEEEST
T ss_pred cccCcccCCceEEEEEEEeeEEEecc
Confidence 1236999999999998763
No 17
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.79 E-value=4.3e-17 Score=164.96 Aligned_cols=270 Identities=16% Similarity=0.228 Sum_probs=157.0
Q ss_pred CcEEEeCCCcceeee---EEeccce-eEEEccCcEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceeeEEEeceeceEEE
Q 011615 91 GAQLIVPPGKWLTGS---FNLTSHF-TLYIHKDALLLASQDESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVT 166 (481)
Q Consensus 91 g~~v~iP~G~Yl~~~---i~l~s~~-~l~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~ 166 (481)
..+|||+||+|.++. +.|++++ +++|+.||.+++. +.+....+|+.|+
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~sn~~~VYlApGAyVkGA----------------------------f~~~~~~~nv~i~ 283 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLPSNTKWVYLAPGAYVKGA----------------------------FEYTDTQQNVKIT 283 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-TT--EEEE-TTEEEES-----------------------------EEE---SSEEEEE
T ss_pred cceEEeCCceEEeCCCccEEECCCccEEEEcCCcEEEEE----------------------------EEEccCCceEEEE
Confidence 479999999998874 8999985 8999999888742 3333678999999
Q ss_pred ccceeeeCCCchhhhhccccCC------C--CCCCeeEE---EEeeccEEEEeeEEeeCCCCeEEeeccc----cEEEEe
Q 011615 167 GGNATINGQGEPWWIKYRKKQF------N--VTRPYLIE---VMFSDNVQISNLTLIDSPSWNVHPVYSS----NVLIQG 231 (481)
Q Consensus 167 G~~G~idG~g~~ww~~~~~~~~------~--~~rp~~i~---~~~~~nv~I~g~~i~ns~~~~i~~~~~~----nv~i~~ 231 (481)
|+ |+++|....|-........ . ...-+++. ...++++.++|++|.++|+|.+.+..-+ +..|+|
T Consensus 284 G~-GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~n 362 (582)
T PF03718_consen 284 GR-GVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISN 362 (582)
T ss_dssp SS-SEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEE
T ss_pred ee-EEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeec
Confidence 97 9999987665321111000 0 01123444 3456689999999999999999998555 489999
Q ss_pred EEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCC-ceEEeccCcC
Q 011615 232 LTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDS-AAIALGSEMS 310 (481)
Q Consensus 232 ~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~-~gisIGs~~~ 310 (481)
.++...+ ..++|||.+. ++-+|+||++++.||+|.+. -+|+.|+||++|..+. .-+.+|.. .
T Consensus 363 yKqVGaW-~~qtDGi~ly--~nS~i~dcF~h~nDD~iKlY-------------hS~v~v~~~ViWk~~Ngpiiq~GW~-p 425 (582)
T PF03718_consen 363 YKQVGAW-YFQTDGIELY--PNSTIRDCFIHVNDDAIKLY-------------HSNVSVSNTVIWKNENGPIIQWGWT-P 425 (582)
T ss_dssp EEEE----CTT----B----TT-EEEEEEEEESS-SEE---------------STTEEEEEEEEEE-SSS-SEE--CS--
T ss_pred eeeeeeE-EeccCCcccc--CCCeeeeeEEEecCchhhee-------------ecCcceeeeEEEecCCCCeEEeecc-c
Confidence 9999765 4789999985 77788999999999998664 3799999999998532 23566654 3
Q ss_pred CCEEEEEEEeeEEEcCC---------ceEEEEeecC----C------CceeecEEEEeeEEccc-eeeEEEEcccCCCCC
Q 011615 311 GGIKDVRAEDITAINTQ---------SGVRIKTAVG----R------GAYVKEIYVRRMTMKTM-KYVFWMTGDYGSHPD 370 (481)
Q Consensus 311 ~~v~nI~v~n~~~~~~~---------~Gi~Ikt~~g----~------~g~v~nI~f~ni~~~~~-~~~i~i~~~y~~~~~ 370 (481)
..+.||+|+|+.+..+. .+|.-.+... . .-.||+++|+|+++++. ...+.|...
T Consensus 426 r~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~pl------ 499 (582)
T PF03718_consen 426 RNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPL------ 499 (582)
T ss_dssp --EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--S------
T ss_pred cccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeec------
Confidence 46999999999998762 3444433211 1 12579999999999995 445666532
Q ss_pred CCCCCCCCCeEEeEEEEEEEEE-----ccCeeE-EE---ec---cCCCCeeeEEEEeEEEEe
Q 011615 371 PGFDPKALPTVTGINYRDMVAD-----NVTQSA-KL---DG---IRNDPFTGICISNVTIKL 420 (481)
Q Consensus 371 ~~~~~~~~~~i~nItf~nI~~~-----~~~~~~-~l---~g---~~~~~~~~I~~~ni~i~~ 420 (481)
...+|+.++|+... ...... .+ .+ .......+|.|+|.++..
T Consensus 500 --------qn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg 553 (582)
T PF03718_consen 500 --------QNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGG 553 (582)
T ss_dssp --------EEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETT
T ss_pred --------CCCcceEEEEeecccccCcccccceeeccccccccccccccccceEEEeEEECC
Confidence 23344444444443 211111 11 11 123457999999999864
No 18
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.79 E-value=3.4e-17 Score=167.00 Aligned_cols=197 Identities=17% Similarity=0.194 Sum_probs=157.1
Q ss_pred eEEEEeeccEEEEeeEEeeCC---CC----------------eEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEE
Q 011615 195 LIEVMFSDNVQISNLTLIDSP---SW----------------NVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTR 255 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~---~~----------------~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~ 255 (481)
.+.+.+++|++|.|--..+.. .| .+.+..|+|+.|+++++.+++ ...+++..|+||+
T Consensus 115 ~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp----~w~i~~~~~~~v~ 190 (404)
T PLN02188 115 WIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSK----FFHIALVECRNFK 190 (404)
T ss_pred eEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCC----CeEEEEEccccEE
Confidence 466777889999886555533 12 257889999999999999965 3458899999999
Q ss_pred EEecEEec-----CCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCCceE
Q 011615 256 IEDNYIVS-----GDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGV 330 (481)
Q Consensus 256 I~n~~i~~-----gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~Gi 330 (481)
|++.+|.+ .-|+|.+.+ ++||+|+||++..+ +++|+|++. .+||+|+|+++... +||
T Consensus 191 i~~v~I~~~~~spNtDGidi~~------------s~nV~I~n~~I~~G-DDcIaiksg----~~nI~I~n~~c~~g-hGi 252 (404)
T PLN02188 191 GSGLKISAPSDSPNTDGIHIER------------SSGVYISDSRIGTG-DDCISIGQG----NSQVTITRIRCGPG-HGI 252 (404)
T ss_pred EEEEEEeCCCCCCCCCcEeeeC------------cccEEEEeeEEeCC-CcEEEEccC----CccEEEEEEEEcCC-CcE
Confidence 99999986 357777766 89999999999997 889999874 46999999999654 899
Q ss_pred EEEeec--CCCceeecEEEEeeEEccceeeEEEEcccCCCCCCCCCCCCCCeEEeEEEEEEEEEccCeeEEEe---cc--
Q 011615 331 RIKTAV--GRGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINYRDMVADNVTQSAKLD---GI-- 403 (481)
Q Consensus 331 ~Ikt~~--g~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nItf~nI~~~~~~~~~~l~---g~-- 403 (481)
.|.|.. ...+.|+||+|+|+++.+..+++.|+.+... ...+.++||+|+||++.++..|+.|. |.
T Consensus 253 siGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~--------~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~ 324 (404)
T PLN02188 253 SVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANS--------PGKSAATNMTFENIVMNNVTNPIIIDQKYCPFY 324 (404)
T ss_pred EeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCC--------CCceEEEEEEEEeEEecCccceEEEEccccCCC
Confidence 998842 1236799999999999999999999986431 12268999999999999998888764 21
Q ss_pred -------CCCCeeeEEEEeEEEEec
Q 011615 404 -------RNDPFTGICISNVTIKLT 421 (481)
Q Consensus 404 -------~~~~~~~I~~~ni~i~~~ 421 (481)
....++||+|+||+.+..
T Consensus 325 ~~~~~~~s~v~I~nIt~~nI~gt~~ 349 (404)
T PLN02188 325 SCESKYPSGVTLSDIYFKNIRGTSS 349 (404)
T ss_pred CCCcCCCCCcEEEeEEEEEEEEEec
Confidence 124589999999999864
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.58 E-value=1.3e-12 Score=130.11 Aligned_cols=117 Identities=23% Similarity=0.319 Sum_probs=64.1
Q ss_pred eeccEEEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCC---CCCCCCcCCCCCccEEEEecEEecC-CceeeecCCCC
Q 011615 200 FSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPID---SPNTDGINPDSCTNTRIEDNYIVSG-DDCVAVKSGWD 275 (481)
Q Consensus 200 ~~~nv~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~---~~n~DGI~~~~s~nV~I~n~~i~~g-DD~iai~sg~~ 275 (481)
.+++|+|+++++.++..+++.+..|++++|+++++..... ....+||.+..|++++|++|.+... |++|.++.
T Consensus 61 ~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~--- 137 (314)
T TIGR03805 61 TSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ--- 137 (314)
T ss_pred EeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC---
Confidence 4566666666666666666666666666666666653211 1234566666666666666666553 33555543
Q ss_pred ccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCCceEEEEe
Q 011615 276 EYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKT 334 (481)
Q Consensus 276 ~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~Gi~Ikt 334 (481)
++|+.|+||+++.. ..||-+- ...++.|+|+.+.+...|+.+-.
T Consensus 138 ---------s~~~~v~nN~~~~n-~~GI~i~-----~S~~~~v~~N~~~~N~~Gi~v~~ 181 (314)
T TIGR03805 138 ---------SQNIVVRNNVAEEN-VAGIEIE-----NSQNADVYNNIATNNTGGILVFD 181 (314)
T ss_pred ---------CCCeEEECCEEccC-cceEEEE-----ecCCcEEECCEEeccceeEEEee
Confidence 55666666666554 3455543 12345555555555555555533
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=1.2e-11 Score=128.92 Aligned_cols=212 Identities=16% Similarity=0.154 Sum_probs=153.1
Q ss_pred ceeeEEEeceeceEEEccceeeeCCCc--hhhhhccc---------cCCCCCCCeeEEEEeeccEEEEeeEEeeCCCCeE
Q 011615 151 FSSLIFGTNLTDVVVTGGNATINGQGE--PWWIKYRK---------KQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNV 219 (481)
Q Consensus 151 ~~~~i~~~~~~ni~I~G~~G~idG~g~--~ww~~~~~---------~~~~~~rp~~i~~~~~~nv~I~g~~i~ns~~~~i 219 (481)
+.+.++.....+..+.++ |.+|+.+. .||...-. ....+.|+.. .+...- ...+.+.-+-..-.++
T Consensus 165 ~~~~~~a~~~~~~~~~~~-g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~-~~~~~g-~~~~~i~~~~~rp~~~ 241 (542)
T COG5434 165 SGPYVYATDSDNAMISGE-GLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDK-WFSGLG-AVETRIGGKGVRPRTV 241 (542)
T ss_pred cCcceeeecccCceeeee-cccccCcccceeccCCceEEEeccceecCccccchhh-hhhccc-chhhcccccCcCCceE
Confidence 456778888888888885 87886432 34332100 0001111110 000000 0011111111234568
Q ss_pred EeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCC----ceeeecCCCCccCcccCCceeeEEEEEEEE
Q 011615 220 HPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGD----DCVAVKSGWDEYGIKVGMPTQHLIIRRLIC 295 (481)
Q Consensus 220 ~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gD----D~iai~sg~~~~g~~~~~~s~nI~I~n~~~ 295 (481)
.+..|+||.+.+++|.+++ ..++|+..|+|++++|.+|.+.+ |++.+.+ |+|+.|++|+|
T Consensus 242 ~l~~c~NV~~~g~~i~ns~----~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s------------c~NvlI~~~~f 305 (542)
T COG5434 242 VLKGCRNVLLEGLNIKNSP----LWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS------------CSNVLIEGCRF 305 (542)
T ss_pred EEeccceEEEeeeEecCCC----cEEEeeecccCceecceEEECCCCCCCCcccccc------------ceeEEEeccEE
Confidence 8999999999999999964 37799999999999999998854 3666655 99999999999
Q ss_pred eCCCCceEEeccCcC-------CCEEEEEEEeeEEEcCCceEEEEeecCCCceeecEEEEeeEEccceeeEEEEcccCCC
Q 011615 296 ISPDSAAIALGSEMS-------GGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFWMTGDYGSH 368 (481)
Q Consensus 296 ~~~~~~gisIGs~~~-------~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~ 368 (481)
..+ +++|.+.+... +..++|.|+||.|.....++-+.++. +|.|+||++||+.|.+..+++.|+....
T Consensus 306 dtg-DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~--~ggv~ni~ved~~~~~~d~GLRikt~~~-- 380 (542)
T COG5434 306 DTG-DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM--GGGVQNITVEDCVMDNTDRGLRIKTNDG-- 380 (542)
T ss_pred ecC-CceEEeecccCCcccccccccccEEEecceecccccceEeeeec--CCceeEEEEEeeeeccCcceeeeeeecc--
Confidence 986 78999988643 23699999999999887888888887 6889999999999999999999988733
Q ss_pred CCCCCCCCCCCeEEeEEEEEEEEEcc
Q 011615 369 PDPGFDPKALPTVTGINYRDMVADNV 394 (481)
Q Consensus 369 ~~~~~~~~~~~~i~nItf~nI~~~~~ 394 (481)
+.+.++||+|+++.+.++
T Consensus 381 --------~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 --------RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred --------cceeEEEEEEecccccCc
Confidence 337899999999998876
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.21 E-value=7.8e-10 Score=110.25 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=117.3
Q ss_pred eeEEEEeeccEEEEeeEEee-------CCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCc
Q 011615 194 YLIEVMFSDNVQISNLTLID-------SPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDD 266 (481)
Q Consensus 194 ~~i~~~~~~nv~I~g~~i~n-------s~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD 266 (481)
..|.+..+++++|+++++.. ...+++.+..|++++|+++++... ..+||.+..|++++|+++++.....
T Consensus 78 ~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~----~d~GIyv~~s~~~~v~nN~~~~n~~ 153 (314)
T TIGR03805 78 DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGA----SDAGIYVGQSQNIVVRNNVAEENVA 153 (314)
T ss_pred CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECC----CcccEEECCCCCeEEECCEEccCcc
Confidence 37888999999999999972 356899999999999999999873 3359999999999999999998888
Q ss_pred eeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcC---CCEEEEEEEeeEEEcCC-ceEE-----EEeecC
Q 011615 267 CVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMS---GGIKDVRAEDITAINTQ-SGVR-----IKTAVG 337 (481)
Q Consensus 267 ~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~---~~v~nI~v~n~~~~~~~-~Gi~-----Ikt~~g 337 (481)
+|.+.. +.++.|+++.+... ..|+.+-+... ...++++|+++.+.+.. .... +...+.
T Consensus 154 GI~i~~------------S~~~~v~~N~~~~N-~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~ 220 (314)
T TIGR03805 154 GIEIEN------------SQNADVYNNIATNN-TGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPA 220 (314)
T ss_pred eEEEEe------------cCCcEEECCEEecc-ceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCC
Confidence 888764 78999999999986 56888854322 24579999999998763 2122 211222
Q ss_pred CCcee----ecEEEEeeEEccce-eeEEEEc
Q 011615 338 RGAYV----KEIYVRRMTMKTMK-YVFWMTG 363 (481)
Q Consensus 338 ~~g~v----~nI~f~ni~~~~~~-~~i~i~~ 363 (481)
+.|.+ ++++|+|.++++.. .+|++..
T Consensus 221 g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~ 251 (314)
T TIGR03805 221 GTGVVVMANRDVEIFGNVISNNDTANVLISS 251 (314)
T ss_pred CcEEEEEcccceEEECCEEeCCcceeEEEEe
Confidence 23544 89999999998875 4566643
No 22
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.81 E-value=2.2e-07 Score=94.40 Aligned_cols=143 Identities=18% Similarity=0.182 Sum_probs=108.3
Q ss_pred eeEEEEeeccEEEEeeEEeeCCC------CeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEec-CCc
Q 011615 194 YLIEVMFSDNVQISNLTLIDSPS------WNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVS-GDD 266 (481)
Q Consensus 194 ~~i~~~~~~nv~I~g~~i~ns~~------~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~-gDD 266 (481)
..+.-...++|+|+|++|.++.. ..|++..|++++|++++|.+. ...||.++.|+ ..|.++.|.. .+.
T Consensus 107 ~lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gs----g~FGI~L~~~~-~~I~~N~I~g~~~~ 181 (455)
T TIGR03808 107 SLLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGS----GGNGIWLETVS-GDISGNTITQIAVT 181 (455)
T ss_pred eEEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcC----CcceEEEEcCc-ceEecceEeccccc
Confidence 35667789999999999998763 368889999999999999973 13789999998 7777777765 566
Q ss_pred eeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceEEeccC--------------------------cCC-----CEEE
Q 011615 267 CVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSE--------------------------MSG-----GIKD 315 (481)
Q Consensus 267 ~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~--------------------------~~~-----~v~n 315 (481)
.|.+.. +++..|+++++...+++||.|--. ... ...+
T Consensus 182 ~I~lw~------------S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~ 249 (455)
T TIGR03808 182 AIVSFD------------ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGN 249 (455)
T ss_pred eEEEec------------cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCC
Confidence 655543 899999999999987767766421 011 2567
Q ss_pred EEEEeeEEEcCC-ceEEEEeecCCCceeecEEEEeeEEcccee-eEE
Q 011615 316 VRAEDITAINTQ-SGVRIKTAVGRGAYVKEIYVRRMTMKTMKY-VFW 360 (481)
Q Consensus 316 I~v~n~~~~~~~-~Gi~Ikt~~g~~g~v~nI~f~ni~~~~~~~-~i~ 360 (481)
++|+++++.+++ .||++.+ .+|+.|.+.+++++++ ++.
T Consensus 250 v~V~gN~I~~~r~dgI~~ns-------ss~~~i~~N~~~~~R~~alh 289 (455)
T TIGR03808 250 VIVRGNRIRNCDYSAVRGNS-------ASNIQITGNSVSDVREVALY 289 (455)
T ss_pred eEEECCEEeccccceEEEEc-------ccCcEEECcEeeeeeeeEEE
Confidence 888888888888 8888865 3567777777777766 554
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.76 E-value=5.2e-08 Score=91.41 Aligned_cols=162 Identities=14% Similarity=0.206 Sum_probs=103.4
Q ss_pred eceeceEEEccceeeeC--CCchhhhhccccCC-CCCCCeeEEEEeeccEEEEeeEEeeCCCCeEEeeccccEEEEeEEE
Q 011615 158 TNLTDVVVTGGNATING--QGEPWWIKYRKKQF-NVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTI 234 (481)
Q Consensus 158 ~~~~ni~I~G~~G~idG--~g~~ww~~~~~~~~-~~~rp~~i~~~~~~nv~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i 234 (481)
++++++.|+. .++.- +...|+...-.-+. ....|. .|+.|++++++++++-|++- .++.|++|+++|+.+
T Consensus 55 Wh~~~~~i~~--~~f~~~aRa~iWYs~~i~m~d~~i~apK--~fR~~~~i~L~nv~~~~A~E---t~W~c~~i~l~nv~~ 127 (277)
T PF12541_consen 55 WHSDNIKIEN--CYFTEMARAAIWYSNNITMKDSVIQAPK--MFRECSNITLENVDIPDADE---TLWNCRGIKLKNVQA 127 (277)
T ss_pred EEECCeEEEe--eEEeecceeeeeEeCCEEEEeeeccCch--HhhcccCcEEEeeEeCCCcc---cCEEeCCeEEEeEEE
Confidence 5567778876 44432 22345543211110 112222 35678888888888877764 345677777777777
Q ss_pred ECCCCCCC-----CCCc------CCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceE
Q 011615 235 RAPIDSPN-----TDGI------NPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAI 303 (481)
Q Consensus 235 ~~~~~~~n-----~DGI------~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi 303 (481)
.+.....+ -|++ -+++++||.|+|+.+.+.| |+ |+ ++||+|.|..+.+- =+
T Consensus 128 ~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD---AF---Wn---------~eNVtVyDS~i~GE---YL 189 (277)
T PF12541_consen 128 NGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD---AF---WN---------CENVTVYDSVINGE---YL 189 (277)
T ss_pred eceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc---cc---cc---------CCceEEEcceEeee---EE
Confidence 44321111 1222 2467899999999999877 22 22 89999999998853 23
Q ss_pred EeccCcCCCEEEEEEEeeEEEcCCceEEEEeecCCCceeecEEEEeeEEccceeeEE
Q 011615 304 ALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFW 360 (481)
Q Consensus 304 sIGs~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~f~ni~~~~~~~~i~ 360 (481)
+. ..+|+++.||++.+.+. --+++|++.+|++|.++..++.
T Consensus 190 gW------~SkNltliNC~I~g~Qp----------LCY~~~L~l~nC~~~~tdlaFE 230 (277)
T PF12541_consen 190 GW------NSKNLTLINCTIEGTQP----------LCYCDNLVLENCTMIDTDLAFE 230 (277)
T ss_pred EE------EcCCeEEEEeEEeccCc----------cEeecceEEeCcEeecceeeee
Confidence 22 46799999999987742 2578899999999988766554
No 24
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.67 E-value=1.9e-07 Score=82.89 Aligned_cols=141 Identities=21% Similarity=0.223 Sum_probs=100.3
Q ss_pred eEEEEeeccEEEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecCCC
Q 011615 195 LIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGW 274 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~ 274 (481)
.|.+....+++|++++|.+....++.+..+..++|++++|.. ...|+++....++++++|.+.....++.+..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~~-- 74 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVSG-- 74 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECCS--
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEEe--
Confidence 467777888999999999999999999999999999999997 4678999888999999999998765555543
Q ss_pred CccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCC-ceEEEEeecCCCceeecEEEEeeEEc
Q 011615 275 DEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQ-SGVRIKTAVGRGAYVKEIYVRRMTMK 353 (481)
Q Consensus 275 ~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~-~Gi~Ikt~~g~~g~v~nI~f~ni~~~ 353 (481)
..++.|++|.+......||.+.. ...+++|++|+|.+.. .|+.+.... -.+++|++.++.
T Consensus 75 ----------~~~~~i~~~~i~~~~~~gi~~~~----~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~ 135 (158)
T PF13229_consen 75 ----------SSNITIENNRIENNGDYGIYISN----SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTIS 135 (158)
T ss_dssp -----------CS-EEES-EEECSSS-SCE-TC----EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEE
T ss_pred ----------cCCceecCcEEEcCCCccEEEec----cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEE
Confidence 78999999999997555887753 2457999999999876 788886532 246778888887
Q ss_pred cce-eeEEE
Q 011615 354 TMK-YVFWM 361 (481)
Q Consensus 354 ~~~-~~i~i 361 (481)
+.. .+|.+
T Consensus 136 ~~~~~gi~~ 144 (158)
T PF13229_consen 136 NNGGNGIYL 144 (158)
T ss_dssp CESSEEEE-
T ss_pred eCcceeEEE
Confidence 653 66654
No 25
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.51 E-value=6.4e-07 Score=84.18 Aligned_cols=101 Identities=22% Similarity=0.226 Sum_probs=78.1
Q ss_pred EEEEeeccEEEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecCCCC
Q 011615 196 IEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWD 275 (481)
Q Consensus 196 i~~~~~~nv~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~ 275 (481)
-.+.+++|+.|+|+.+.. .-.|++|+||.|+|.++...+ . ++.|+||+|.|+.+..-
T Consensus 131 Yf~m~s~ni~id~l~~~G----nY~Fq~~kNvei~ns~l~sKD------A--FWn~eNVtVyDS~i~GE----------- 187 (277)
T PF12541_consen 131 YFFMNSENIYIDNLVLDG----NYSFQYCKNVEIHNSKLDSKD------A--FWNCENVTVYDSVINGE----------- 187 (277)
T ss_pred EeeeeccceEEeceEEeC----CEEeeceeeEEEEccEEeccc------c--cccCCceEEEcceEeee-----------
Confidence 456678888888888754 257899999999999999743 2 46899999999999742
Q ss_pred ccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCCceEEE
Q 011615 276 EYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRI 332 (481)
Q Consensus 276 ~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~Gi~I 332 (481)
..+..++|+++.||++.+.+ |+- .++|++.+||+|.+++-++.-
T Consensus 188 ----YLgW~SkNltliNC~I~g~Q--pLC-------Y~~~L~l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 188 ----YLGWNSKNLTLINCTIEGTQ--PLC-------YCDNLVLENCTMIDTDLAFEY 231 (277)
T ss_pred ----EEEEEcCCeEEEEeEEeccC--ccE-------eecceEEeCcEeecceeeeee
Confidence 12234899999999999854 333 578999999999988665544
No 26
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.39 E-value=4.5e-06 Score=73.96 Aligned_cols=120 Identities=24% Similarity=0.232 Sum_probs=85.2
Q ss_pred eeEEEEeeccEEEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecC-CceeeecC
Q 011615 194 YLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSG-DDCVAVKS 272 (481)
Q Consensus 194 ~~i~~~~~~nv~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~g-DD~iai~s 272 (481)
..|.+..+..++|++.+|.+ ...++.+....+++++++++.... .|+.+..+.+++|++|.+... +.+|.+..
T Consensus 24 ~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~ 97 (158)
T PF13229_consen 24 DGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG-----SGIYVSGSSNITIENNRIENNGDYGIYISN 97 (158)
T ss_dssp ECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S-----EEEECCS-CS-EEES-EEECSSS-SCE-TC
T ss_pred eEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc-----ceEEEEecCCceecCcEEEcCCCccEEEec
Confidence 47888888889999999999 778899999999999999999732 788888999999999999874 44777753
Q ss_pred CCCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCC-ceEEEE
Q 011615 273 GWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQ-SGVRIK 333 (481)
Q Consensus 273 g~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~-~Gi~Ik 333 (481)
+.++++|++|++....+.|+.+.... -.+++|++|++.+.. .|+.+.
T Consensus 98 -----------~~~~~~i~~n~~~~~~~~gi~~~~~~---~~~~~i~~n~i~~~~~~gi~~~ 145 (158)
T PF13229_consen 98 -----------SSSNVTIENNTIHNNGGSGIYLEGGS---SPNVTIENNTISNNGGNGIYLI 145 (158)
T ss_dssp -----------EECS-EEES-EEECCTTSSCEEEECC-----S-EEECEEEECESSEEEE-T
T ss_pred -----------cCCCEEEEeEEEEeCcceeEEEECCC---CCeEEEEEEEEEeCcceeEEEE
Confidence 16789999999998766788776432 347888999999875 777764
No 27
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.29 E-value=1.8e-05 Score=75.87 Aligned_cols=114 Identities=26% Similarity=0.219 Sum_probs=93.3
Q ss_pred eEEEEeeccEEEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecCCC
Q 011615 195 LIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGW 274 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~ 274 (481)
.+.+..+.+++|++.++.+. ..++++..+++++|++..+.. +..||.+..+.+.+|+++.|.....+|.+..
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-- 108 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-- 108 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee--
Confidence 56888999999999999888 778999999999999999986 3488999888877999999988766887765
Q ss_pred CccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcC-CceEEE
Q 011615 275 DEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINT-QSGVRI 332 (481)
Q Consensus 275 ~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~-~~Gi~I 332 (481)
+.+.+|+++++.. ...||.+... .+.+|++++|.+. ..||.+
T Consensus 109 ----------s~~~~I~~N~i~~-~~~GI~l~~s-----~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 109 ----------SSNNTISNNTISN-NGYGIYLSSS-----SNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred ----------CCceEEECcEEeC-CCEEEEEEeC-----CCCEEECeEEeCCCccceEE
Confidence 5778899999884 3778888642 5778888888887 788884
No 28
>PLN02480 Probable pectinesterase
Probab=98.28 E-value=0.00033 Score=70.21 Aligned_cols=132 Identities=10% Similarity=0.040 Sum_probs=66.8
Q ss_pred EEeeccEEEEeeEEeeCCC---------CeEEe-eccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCce
Q 011615 198 VMFSDNVQISNLTLIDSPS---------WNVHP-VYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDC 267 (481)
Q Consensus 198 ~~~~~nv~I~g~~i~ns~~---------~~i~~-~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~ 267 (481)
....++++++||+|+|+.. -.+.+ ...+.+.+.+|++.... |-+.. ....-..+||.|...=|-
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~Q-----DTLy~-~~gR~yf~~C~IeG~VDF 201 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTH-----NTLFD-YKGRHYYHSCYIQGSIDF 201 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEeccc-----ceeEe-CCCCEEEEeCEEEeeeeE
Confidence 3456788999999999731 12322 34667777777776533 22221 223456677777654332
Q ss_pred eeecCCCCccCcccCCceeeEEEEEEEEeCCCC------ceEEeccCcCCCEEEEEEEeeEEEcCCceEEEEeecCCC-c
Q 011615 268 VAVKSGWDEYGIKVGMPTQHLIIRRLICISPDS------AAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRG-A 340 (481)
Q Consensus 268 iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~------~gisIGs~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~-g 340 (481)
| -| .-...+++|++..-.. ..|.-.+.....-....|.||++.+.. .+.+ |+. +
T Consensus 202 I---FG-----------~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~g-~~yL----GRPW~ 262 (343)
T PLN02480 202 I---FG-----------RGRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGIG-EVYL----GRAKG 262 (343)
T ss_pred E---cc-----------ceeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEcccC-ceee----ecCCC
Confidence 2 11 2355666666664210 123222222223345667777776532 1222 211 2
Q ss_pred eeecEEEEeeEEcc
Q 011615 341 YVKEIYVRRMTMKT 354 (481)
Q Consensus 341 ~v~nI~f~ni~~~~ 354 (481)
....+.|.+..|.+
T Consensus 263 ~ya~vVf~~t~l~~ 276 (343)
T PLN02480 263 AYSRVIFAKTYLSK 276 (343)
T ss_pred CcceEEEEecccCC
Confidence 34556666666654
No 29
>smart00656 Amb_all Amb_all domain.
Probab=98.25 E-value=4e-05 Score=70.92 Aligned_cols=97 Identities=24% Similarity=0.253 Sum_probs=72.6
Q ss_pred eEEeeccccEEEEeEEEECCCC--CCCCCCcCCCCCccEEEEecEEecC----------CceeeecCCCCccCcccCCce
Q 011615 218 NVHPVYSSNVLIQGLTIRAPID--SPNTDGINPDSCTNTRIEDNYIVSG----------DDCVAVKSGWDEYGIKVGMPT 285 (481)
Q Consensus 218 ~i~~~~~~nv~i~~~~i~~~~~--~~n~DGI~~~~s~nV~I~n~~i~~g----------DD~iai~sg~~~~g~~~~~~s 285 (481)
++.+..++||.|+|++|+.... ....|+|.+..+++|.|++|+|..+ |..+.++.+ +
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~-----------s 101 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNG-----------S 101 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcc-----------c
Confidence 3444456777788888777542 2467999999999999999999886 444566554 8
Q ss_pred eeEEEEEEEEeCCCCceEEeccCcC---CCEEEEEEEeeEEEcC
Q 011615 286 QHLIIRRLICISPDSAAIALGSEMS---GGIKDVRAEDITAINT 326 (481)
Q Consensus 286 ~nI~I~n~~~~~~~~~gisIGs~~~---~~v~nI~v~n~~~~~~ 326 (481)
.+|+|++|.|.. +..+.-+|+... ....+|++.++.+.++
T Consensus 102 ~~vTvs~~~f~~-h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 102 TYVTISNNYFHN-HWKVMLLGHSDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ccEEEECceEec-CCEEEEEccCCCccccccceEEEECcEEcCc
Confidence 999999999986 467888887532 2345899999999775
No 30
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=3.4e-05 Score=73.94 Aligned_cols=136 Identities=24% Similarity=0.214 Sum_probs=93.1
Q ss_pred EEEEeeccEEEEeeEEe-eCCCCeEEeeccccEEEEeEEEECCCC-CCCCCCcCC-CCCccEEEEecEEec---------
Q 011615 196 IEVMFSDNVQISNLTLI-DSPSWNVHPVYSSNVLIQGLTIRAPID-SPNTDGINP-DSCTNTRIEDNYIVS--------- 263 (481)
Q Consensus 196 i~~~~~~nv~I~g~~i~-ns~~~~i~~~~~~nv~i~~~~i~~~~~-~~n~DGI~~-~~s~nV~I~n~~i~~--------- 263 (481)
+.+.-+.|.+|.|+.-. ---.|++.+.+..||.|+|++|..... -++-|+|.+ ..++|++|++|+|..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h 174 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSH 174 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccC
Confidence 55555666666655421 112466777778888888888876431 233588888 678999999999976
Q ss_pred CCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcC----CCEEEEEEEeeEEEcCC-ce--EEEEeec
Q 011615 264 GDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMS----GGIKDVRAEDITAINTQ-SG--VRIKTAV 336 (481)
Q Consensus 264 gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~----~~v~nI~v~n~~~~~~~-~G--i~Ikt~~ 336 (481)
+|-.+.|+-+ +..|+|++|+|... +-++-+|+... ++-.+|++.++.|.+.. ++ +|+..
T Consensus 175 ~DGl~Dik~~-----------AnyITiS~n~fhdh-~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~-- 240 (345)
T COG3866 175 GDGLVDIKKD-----------ANYITISYNKFHDH-DKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGM-- 240 (345)
T ss_pred CCccEEeccC-----------CcEEEEEeeeeecC-CeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeE--
Confidence 3445666654 89999999999974 67788888643 45678999999998863 33 33322
Q ss_pred CCCceeecEEEE
Q 011615 337 GRGAYVKEIYVR 348 (481)
Q Consensus 337 g~~g~v~nI~f~ 348 (481)
-.|.|-.|+
T Consensus 241 ---vHvyNNYy~ 249 (345)
T COG3866 241 ---VHVYNNYYE 249 (345)
T ss_pred ---EEEeccccc
Confidence 345566666
No 31
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.24 E-value=1.3e-05 Score=82.49 Aligned_cols=191 Identities=13% Similarity=0.165 Sum_probs=109.4
Q ss_pred EeeccEEEEeeEEeeCCCC----------------------------eEEeeccccEEEEeEEEECCCCCCCCCCcCCCC
Q 011615 199 MFSDNVQISNLTLIDSPSW----------------------------NVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDS 250 (481)
Q Consensus 199 ~~~~nv~I~g~~i~ns~~~----------------------------~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~ 250 (481)
...+|++|.|--+.....+ ++....+++..+++++|.+++. ..+++.+
T Consensus 275 ~~~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~----~Sm~l~g 350 (582)
T PF03718_consen 275 DTQQNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPF----HSMDLYG 350 (582)
T ss_dssp --SSEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-----SEEEES
T ss_pred cCCceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCc----ceEEecC
Confidence 4788888888766543222 2335577899999999999652 3355553
Q ss_pred -Cc---cEEEEecEEec----CCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeE
Q 011615 251 -CT---NTRIEDNYIVS----GDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDIT 322 (481)
Q Consensus 251 -s~---nV~I~n~~i~~----gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~ 322 (481)
+. +..|+|..... .-|++.+ .+|-+|+||.++.. +++|.+- ..++.++||+
T Consensus 351 ~~~~~~~~~i~nyKqVGaW~~qtDGi~l--------------y~nS~i~dcF~h~n-DD~iKlY------hS~v~v~~~V 409 (582)
T PF03718_consen 351 NENDKFSMNISNYKQVGAWYFQTDGIEL--------------YPNSTIRDCFIHVN-DDAIKLY------HSNVSVSNTV 409 (582)
T ss_dssp SSGGGEEEEEEEEEEE---CTT----B----------------TT-EEEEEEEEES-S-SEE--------STTEEEEEEE
T ss_pred CccccccceeeceeeeeeEEeccCCccc--------------cCCCeeeeeEEEec-Cchhhee------ecCcceeeeE
Confidence 33 47888888754 4567666 45667899999986 7888663 3589999999
Q ss_pred EEcCCceEEEEe-ecCCCceeecEEEEeeEEccce---------eeEEEE-cccCCCCCCCCCCCCCCeEEeEEEEEEEE
Q 011615 323 AINTQSGVRIKT-AVGRGAYVKEIYVRRMTMKTMK---------YVFWMT-GDYGSHPDPGFDPKALPTVTGINYRDMVA 391 (481)
Q Consensus 323 ~~~~~~Gi~Ikt-~~g~~g~v~nI~f~ni~~~~~~---------~~i~i~-~~y~~~~~~~~~~~~~~~i~nItf~nI~~ 391 (481)
+....+|--|.. |. ...++||+|+|+.+-..+ .+|+-. .+|.+-... ......-.|++++|+||+.
T Consensus 410 iWk~~Ngpiiq~GW~--pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~-~~adp~~ti~~~~~~nv~~ 486 (582)
T PF03718_consen 410 IWKNENGPIIQWGWT--PRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMAST-KTADPSTTIRNMTFSNVRC 486 (582)
T ss_dssp EEE-SSS-SEE--CS-----EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS---BEEEEEEEEEEEEEEEE
T ss_pred EEecCCCCeEEeecc--ccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCC-CCCCcccceeeEEEEeEEE
Confidence 999877655533 33 567999999999986542 234433 345221111 0111113789999999999
Q ss_pred Ecc-CeeEEEeccCCCCeeeEEEEeEEEE
Q 011615 392 DNV-TQSAKLDGIRNDPFTGICISNVTIK 419 (481)
Q Consensus 392 ~~~-~~~~~l~g~~~~~~~~I~~~ni~i~ 419 (481)
+.. ...+.|. +-....|+.++|+.+.
T Consensus 487 EG~~~~l~ri~--plqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 487 EGMCPCLFRIY--PLQNYDNLVIKNVHFE 513 (582)
T ss_dssp ECCE-ECEEE----SEEEEEEEEEEEEEC
T ss_pred ecccceeEEEe--ecCCCcceEEEEeecc
Confidence 876 3444554 3345677888898887
No 32
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.22 E-value=0.00011 Score=69.96 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhcccCCCcEEEeCCCccee--e---eEEeccceeEEE
Q 011615 73 TKAFNTAISNLSKYAADGGAQLIVPPGKWLT--G---SFNLTSHFTLYI 116 (481)
Q Consensus 73 t~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl~--~---~i~l~s~~~l~l 116 (481)
-+-|++|++.|. .|.+|++-+|+|.- + ||.++++++|..
T Consensus 15 ~~Ti~~A~~~a~-----~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G 58 (246)
T PF07602_consen 15 FKTITKALQAAQ-----PGDTIQLAPGTYSEATGETFPIIIKPGVTLIG 58 (246)
T ss_pred HHHHHHHHHhCC-----CCCEEEECCceeccccCCcccEEecCCeEEee
Confidence 457999999874 68899999999953 2 577777777643
No 33
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.22 E-value=9.7e-05 Score=70.23 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=37.7
Q ss_pred cceEEEEeecCccCCCccchHHHHHHHHHHhhhcccCCCcEEEeCCCcc---eeeeEEeccceeEEEc
Q 011615 53 RKHSAVLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKW---LTGSFNLTSHFTLYIH 117 (481)
Q Consensus 53 ~~~~~nV~dyGA~gDG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Y---l~~~i~l~s~~~l~l~ 117 (481)
+..++|+.||-.. |=-++|.+|+.. +.||++|+|-- +-.++.++.+.+|+++
T Consensus 31 ~~~~vni~dy~~~-----dwiasfkqaf~e--------~qtvvvpagl~cenint~ifip~gktl~v~ 85 (464)
T PRK10123 31 ARQSVNINDYNPH-----DWIASFKQAFSE--------GQTVVVPAGLVCDNINTGIFIPPGKTLHIL 85 (464)
T ss_pred CCceeehhhcCcc-----cHHHHHHHHhcc--------CcEEEecCccEecccccceEeCCCCeEEEE
Confidence 4568899999643 456778887753 57999999953 2347888888888763
No 34
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.17 E-value=3e-05 Score=74.35 Aligned_cols=136 Identities=21% Similarity=0.156 Sum_probs=110.7
Q ss_pred eeEEEEeeccEEEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecCC
Q 011615 194 YLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSG 273 (481)
Q Consensus 194 ~~i~~~~~~nv~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg 273 (481)
..+.+..+++..|++.++.+.. .++.+..+.+++|+++++.. +..||++..+++++|+++.+.....+|.+..
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~- 86 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMG- 86 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEc-
Confidence 3688888899999999998764 57799999999999999987 4789999999999999999998778998876
Q ss_pred CCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCCceEEEEeecCCCceeecEEEEeeEEc
Q 011615 274 WDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMK 353 (481)
Q Consensus 274 ~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~f~ni~~~ 353 (481)
+.+.+|+++++... ..||.+. ...+.+|+++++.+...||.+... .+.++++.++.
T Consensus 87 -----------s~~~~I~~N~i~~n-~~GI~l~-----~s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~ 142 (236)
T PF05048_consen 87 -----------SSNNTISNNTISNN-GYGIYLY-----GSSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTIS 142 (236)
T ss_pred -----------CCCcEEECCEecCC-CceEEEe-----eCCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEe
Confidence 45569999999987 4488775 344688999999988889998642 45666666666
Q ss_pred cc-eeeEE
Q 011615 354 TM-KYVFW 360 (481)
Q Consensus 354 ~~-~~~i~ 360 (481)
+. ..+|.
T Consensus 143 ~n~~~Gi~ 150 (236)
T PF05048_consen 143 NNTDYGIY 150 (236)
T ss_pred CCCccceE
Confidence 65 66776
No 35
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.95 E-value=0.00087 Score=64.50 Aligned_cols=148 Identities=18% Similarity=0.083 Sum_probs=100.7
Q ss_pred EEEeceeceEEEcc--ceeeeCCCchhhhhccccCCCCCCCeeEEEEeeccEEEEeeEEeeCC-----CCeEEe-ecccc
Q 011615 155 IFGTNLTDVVVTGG--NATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSP-----SWNVHP-VYSSN 226 (481)
Q Consensus 155 i~~~~~~ni~I~G~--~G~idG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~g~~i~ns~-----~~~i~~-~~~~n 226 (481)
+....+.|.+|.|. ++++.| ..|.+....||.|+||+|...+ ...|.+ ....|
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g-------------------~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~n 155 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVG-------------------GGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHN 155 (345)
T ss_pred EEEeeccccEEEeeccccEEEe-------------------ceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeE
Confidence 45566788888885 224443 2577888999999999999877 456777 78999
Q ss_pred EEEEeEEEECCCC---CCCCCC-cCCC-CCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCc
Q 011615 227 VLIQGLTIRAPID---SPNTDG-INPD-SCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSA 301 (481)
Q Consensus 227 v~i~~~~i~~~~~---~~n~DG-I~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~ 301 (481)
+.|+++++..... ....|| +++. .+..|+|++|.|...|-..-+.+...+ .+...-.+|++.+|+|.+...+
T Consensus 156 IWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~---~~~~~~~kvT~hhNyFkn~~qR 232 (345)
T COG3866 156 IWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSS---NYDDGKYKVTIHHNYFKNLYQR 232 (345)
T ss_pred EEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcc---cccCCceeEEEecccccccccc
Confidence 9999999998431 112344 3343 367799999999998877766553211 1112356899999999975322
Q ss_pred --eEEeccCcCCCEEEEEEEeeEEEcCC-ceEEE
Q 011615 302 --AIALGSEMSGGIKDVRAEDITAINTQ-SGVRI 332 (481)
Q Consensus 302 --gisIGs~~~~~v~nI~v~n~~~~~~~-~Gi~I 332 (481)
-+.+| -+++.|+.+.+.. .|+.+
T Consensus 233 ~PriRfG--------~vHvyNNYy~~~~~~g~a~ 258 (345)
T COG3866 233 GPRIRFG--------MVHVYNNYYEGNPKFGVAI 258 (345)
T ss_pred CCceEee--------EEEEeccccccCcccceEE
Confidence 34444 5788888887443 44444
No 36
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=97.92 E-value=0.00042 Score=70.68 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhhhcccCCCcEEEeCCCcce
Q 011615 72 NTKAFNTAISNLSKYAADGGAQLIVPPGKWL 102 (481)
Q Consensus 72 dt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl 102 (481)
+.++||+|+++| .+|.+|+++.|+|.
T Consensus 3 s~~~lq~Ai~~a-----~pGD~I~L~~Gty~ 28 (425)
T PF14592_consen 3 SVAELQSAIDNA-----KPGDTIVLADGTYK 28 (425)
T ss_dssp SHHHHHHHHHH-------TT-EEEE-SEEEE
T ss_pred CHHHHHHHHHhC-----CCCCEEEECCceee
Confidence 578999999988 47999999999996
No 37
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.92 E-value=7.3e-05 Score=69.80 Aligned_cols=96 Identities=26% Similarity=0.332 Sum_probs=62.9
Q ss_pred eEEee-ccccEEEEeEEEECC-----------CCCCCCCCcCCCCCccEEEEecEEecC---------CceeeecCCCCc
Q 011615 218 NVHPV-YSSNVLIQGLTIRAP-----------IDSPNTDGINPDSCTNTRIEDNYIVSG---------DDCVAVKSGWDE 276 (481)
Q Consensus 218 ~i~~~-~~~nv~i~~~~i~~~-----------~~~~n~DGI~~~~s~nV~I~n~~i~~g---------DD~iai~sg~~~ 276 (481)
++.+. .++||.|+|++|+.. ......|+|.+..++||.|++|++..+ |..+.++.+
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~--- 114 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKG--- 114 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESS---
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeC---
Confidence 33443 566666666666651 123467999999999999999999766 444666554
Q ss_pred cCcccCCceeeEEEEEEEEeCCCCceEEeccC----cCCCEEEEEEEeeEEEcC
Q 011615 277 YGIKVGMPTQHLIIRRLICISPDSAAIALGSE----MSGGIKDVRAEDITAINT 326 (481)
Q Consensus 277 ~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~----~~~~v~nI~v~n~~~~~~ 326 (481)
+.+|+|++|.|... ..+.-+|+. ...+ .+|++.++.|.++
T Consensus 115 --------s~~vTiS~n~f~~~-~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 115 --------SDNVTISNNIFDNH-NKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp --------TEEEEEES-EEEEE-EETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred --------CceEEEEchhcccc-ccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 89999999999873 445567775 1233 8999999999765
No 38
>smart00656 Amb_all Amb_all domain.
Probab=97.91 E-value=0.00063 Score=62.95 Aligned_cols=124 Identities=18% Similarity=0.081 Sum_probs=85.4
Q ss_pred eeEEEEeeccEEEEeeEEeeCCC------CeEEeeccccEEEEeEEEECCC----CCCCCCCc-CCC-CCccEEEEecEE
Q 011615 194 YLIEVMFSDNVQISNLTLIDSPS------WNVHPVYSSNVLIQGLTIRAPI----DSPNTDGI-NPD-SCTNTRIEDNYI 261 (481)
Q Consensus 194 ~~i~~~~~~nv~I~g~~i~ns~~------~~i~~~~~~nv~i~~~~i~~~~----~~~n~DGI-~~~-~s~nV~I~n~~i 261 (481)
..|.+..++||.|++|+|++... .+|.+..+++|.|++|++.... .....||. ++. .+.+|+|++|.|
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 35778789999999999998533 5789999999999999999841 01114554 333 478999999999
Q ss_pred ecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCC
Q 011615 262 VSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQ 327 (481)
Q Consensus 262 ~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~ 327 (481)
...+=+..+.++..... ....+|++.+|++.......-.+.. + .+++-|+.+.+..
T Consensus 112 ~~h~~~~liG~~d~~~~----~~~~~vT~h~N~~~~~~~R~P~~r~----g--~~hv~NN~~~n~~ 167 (190)
T smart00656 112 HNHWKVMLLGHSDSDTD----DGKMRVTIAHNYFGNLRQRAPRVRF----G--YVHVYNNYYTGWT 167 (190)
T ss_pred ecCCEEEEEccCCCccc----cccceEEEECcEEcCcccCCCcccC----C--EEEEEeeEEeCcc
Confidence 87665565655421000 0024799999999875433333321 2 6888999988764
No 39
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.85 E-value=0.0013 Score=64.28 Aligned_cols=158 Identities=22% Similarity=0.268 Sum_probs=100.3
Q ss_pred CCCcEEEeCCCcceeeeEEeccceeEEEccCcEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceeeEEEeceeceEEEcc
Q 011615 89 DGGAQLIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQDESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGG 168 (481)
Q Consensus 89 ~~g~~v~iP~G~Yl~~~i~l~s~~~l~l~~ga~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ni~I~G~ 168 (481)
.+|..+.+. |+| .+++.+.-..+|+-+.++++-.... ...+. ....+++|+|
T Consensus 32 ~pgd~~~i~-g~~-~g~~vInr~l~l~ge~ga~l~g~g~------------------------G~~vt-v~aP~~~v~G- 83 (408)
T COG3420 32 KPGDYYGIS-GRY-AGNFVINRALTLRGENGAVLDGGGK------------------------GSYVT-VAAPDVIVEG- 83 (408)
T ss_pred CCCcEEEEe-eee-cccEEEccceeeccccccEEecCCc------------------------ccEEE-EeCCCceeee-
Confidence 477888888 666 2344444445555566666643221 12333 2356677777
Q ss_pred ceeeeCCCchhhhhccccCCCCCCCeeEEEEeeccEEEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCC---CCCCCC
Q 011615 169 NATINGQGEPWWIKYRKKQFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPID---SPNTDG 245 (481)
Q Consensus 169 ~G~idG~g~~ww~~~~~~~~~~~rp~~i~~~~~~nv~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~---~~n~DG 245 (481)
-+..+.|...-. -....+.-...+.-.|++-.+... .+++.+..+.++.|.+.+|....+ ....+|
T Consensus 84 -l~vr~sg~~lp~---------m~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnG 152 (408)
T COG3420 84 -LTVRGSGRSLPA---------MDAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNG 152 (408)
T ss_pred -EEEecCCCCccc---------ccceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCc
Confidence 466655542111 011123333445555666555543 467889999999999999988654 345789
Q ss_pred cCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeC
Q 011615 246 INPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICIS 297 (481)
Q Consensus 246 I~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~ 297 (481)
|++.++++++|..+.+.-+.|||-... +++-.|+++.++.
T Consensus 153 I~vyNa~~a~V~~ndisy~rDgIy~~~------------S~~~~~~gnr~~~ 192 (408)
T COG3420 153 IYVYNAPGALVVGNDISYGRDGIYSDT------------SQHNVFKGNRFRD 192 (408)
T ss_pred eEEEcCCCcEEEcCccccccceEEEcc------------cccceecccchhh
Confidence 999999999999999999999998876 5555666665554
No 40
>PLN02682 pectinesterase family protein
Probab=97.82 E-value=0.016 Score=58.68 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhhhcccCCCcEEEeCCCcceeeeEEe---ccceeEEE
Q 011615 72 NTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNL---TSHFTLYI 116 (481)
Q Consensus 72 dt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl~~~i~l---~s~~~l~l 116 (481)
|-.-||+||+++... ....-+|+|.+|+|. ..+.+ +.+++|..
T Consensus 81 df~TIQ~AIdavP~~-~~~r~vI~Ik~G~Y~-EkV~Ip~~k~~Itl~G 126 (369)
T PLN02682 81 DFTTIQAAIDSLPVI-NLVRVVIKVNAGTYR-EKVNIPPLKAYITLEG 126 (369)
T ss_pred CccCHHHHHhhcccc-CCceEEEEEeCceee-EEEEEeccCceEEEEe
Confidence 466799999998641 012458999999995 33444 45566644
No 41
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.76 E-value=0.0013 Score=61.88 Aligned_cols=124 Identities=23% Similarity=0.291 Sum_probs=81.1
Q ss_pred EEEEeeEEeeCCC------CeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecCCCCcc
Q 011615 204 VQISNLTLIDSPS------WNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEY 277 (481)
Q Consensus 204 v~I~g~~i~ns~~------~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~ 277 (481)
+.|+++++..... .++.+..++++.|+++++.+ .+.+|+.+..+....+.+..... ++.+..+
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~----~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~---- 162 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIEN----SGGDGIYFNTGTDYRIIGSTHVS---GIFIDNG---- 162 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE---EEEEESC----
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEc----cCccEEEEEccccCcEeecccce---eeeeccc----
Confidence 4477777765432 34777778888888888886 34567777655555554443321 2333332
Q ss_pred CcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEc-CCceEEEEeecCCCceeecEEEEeeEEccce
Q 011615 278 GIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAIN-TQSGVRIKTAVGRGAYVKEIYVRRMTMKTMK 356 (481)
Q Consensus 278 g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~-~~~Gi~Ikt~~g~~g~v~nI~f~ni~~~~~~ 356 (481)
+.++.+.++.+... ..|+..+. ++++++||++.+ ...||.+.... +++++|++++++.
T Consensus 163 -------~~~~~~~~~~~~~~-~~g~~~~~------~~~~i~n~~~~~~~~~gi~i~~~~-------~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 163 -------SNNVIVNNCIFNGG-DNGIILGN------NNITISNNTFEGNCGNGINIEGGS-------NIIISNNTIENCD 221 (225)
T ss_dssp -------EEEEEEECEEEESS-SCSEECEE------EEEEEECEEEESSSSESEEEEECS-------EEEEEEEEEESSS
T ss_pred -------eeEEEECCccccCC-CceeEeec------ceEEEEeEEECCccceeEEEECCe-------EEEEEeEEEECCc
Confidence 46777788888875 55654443 799999999998 67899886532 3888888888876
Q ss_pred eeE
Q 011615 357 YVF 359 (481)
Q Consensus 357 ~~i 359 (481)
.+|
T Consensus 222 ~g~ 224 (225)
T PF12708_consen 222 DGI 224 (225)
T ss_dssp EEE
T ss_pred cCc
Confidence 665
No 42
>PLN02773 pectinesterase
Probab=97.73 E-value=0.011 Score=58.83 Aligned_cols=134 Identities=13% Similarity=0.071 Sum_probs=70.5
Q ss_pred EEEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeee
Q 011615 196 IEVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAV 270 (481)
Q Consensus 196 i~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai 270 (481)
-.+..++++.++||+|+|+..- .+- ....+.+.+.+|++.... |-+... .....++||.|...=|-| .
T Consensus 96 Tv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~Q-----DTL~~~-~gr~yf~~c~IeG~VDFI-F 168 (317)
T PLN02773 96 TVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQ-----DTLYLH-YGKQYLRDCYIEGSVDFI-F 168 (317)
T ss_pred EEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeeccc-----ceeEeC-CCCEEEEeeEEeecccEE-e
Confidence 3445688999999999998421 111 224667777777777633 222222 234667777776654433 1
Q ss_pred cCCCCccCcccCCceeeEEEEEEEEeCCCCce-EEeccCc-CCCEEEEEEEeeEEEcCCc--eEEEEeecCCC-ceeecE
Q 011615 271 KSGWDEYGIKVGMPTQHLIIRRLICISPDSAA-IALGSEM-SGGIKDVRAEDITAINTQS--GVRIKTAVGRG-AYVKEI 345 (481)
Q Consensus 271 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~g-isIGs~~-~~~v~nI~v~n~~~~~~~~--Gi~Ikt~~g~~-g~v~nI 345 (481)
+ .-...+++|++..- ..| |.--+.. ...-....|.||++.+... -+.+ |+. +.-..+
T Consensus 169 G-------------~g~a~Fe~c~i~s~-~~g~ITA~~r~~~~~~~GfvF~~c~it~~~~~~~~yL----GRpW~~~a~v 230 (317)
T PLN02773 169 G-------------NSTALLEHCHIHCK-SAGFITAQSRKSSQESTGYVFLRCVITGNGGSGYMYL----GRPWGPFGRV 230 (317)
T ss_pred e-------------ccEEEEEeeEEEEc-cCcEEECCCCCCCCCCceEEEEccEEecCCCCcceee----cCCCCCCceE
Confidence 1 23467777777643 222 2222111 1123456777777766431 1222 111 223466
Q ss_pred EEEeeEEcc
Q 011615 346 YVRRMTMKT 354 (481)
Q Consensus 346 ~f~ni~~~~ 354 (481)
.|.|..|.+
T Consensus 231 Vf~~t~l~~ 239 (317)
T PLN02773 231 VFAYTYMDA 239 (317)
T ss_pred EEEecccCC
Confidence 666666665
No 43
>PLN02497 probable pectinesterase
Probab=97.54 E-value=0.019 Score=57.37 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHhhhcccCCCcEEEeCCCcce
Q 011615 72 NTKAFNTAISNLSKYAADGGAQLIVPPGKWL 102 (481)
Q Consensus 72 dt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl 102 (481)
|-.-||+||+++... ....-+|+|-+|+|.
T Consensus 43 df~TIq~AIdavP~~-~~~~~~I~Ik~G~Y~ 72 (331)
T PLN02497 43 NFTTIQSAIDSVPSN-NKHWFCINVKAGLYR 72 (331)
T ss_pred CccCHHHHHhhcccc-CCceEEEEEeCcEEE
Confidence 467799999998751 012347999999995
No 44
>PLN02176 putative pectinesterase
Probab=97.51 E-value=0.038 Score=55.43 Aligned_cols=30 Identities=13% Similarity=0.239 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhhhcccCCCcEEEeCCCcce
Q 011615 72 NTKAFNTAISNLSKYAADGGAQLIVPPGKWL 102 (481)
Q Consensus 72 dt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl 102 (481)
|-.-||+||+++... ....-+|+|.+|+|.
T Consensus 50 df~TIq~AIdavP~~-~~~~~~I~Ik~GvY~ 79 (340)
T PLN02176 50 YFKTVQSAIDSIPLQ-NQNWIRILIQNGIYR 79 (340)
T ss_pred CccCHHHHHhhchhc-CCceEEEEECCcEEE
Confidence 477899999998751 012347899999996
No 45
>PLN02634 probable pectinesterase
Probab=97.38 E-value=0.076 Score=53.57 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhhhcccCCCcEEEeCCCcceeeeEEe---ccceeEE
Q 011615 72 NTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNL---TSHFTLY 115 (481)
Q Consensus 72 dt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl~~~i~l---~s~~~l~ 115 (481)
|-.-||+||+++.+. ....-+|+|-+|+|. ..+.+ +.+++|.
T Consensus 67 df~TIQaAIda~P~~-~~~r~vI~Ik~GvY~-EkV~Ip~~k~~ItL~ 111 (359)
T PLN02634 67 DFRSVQDAVDSVPKN-NTMSVTIKINAGFYR-EKVVVPATKPYITFQ 111 (359)
T ss_pred CccCHHHHHhhCccc-CCccEEEEEeCceEE-EEEEEcCCCCeEEEE
Confidence 477899999999651 122457999999996 23344 3345554
No 46
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.38 E-value=0.059 Score=55.39 Aligned_cols=118 Identities=16% Similarity=0.117 Sum_probs=62.3
Q ss_pred eEEEEeeccEEEEeeEEeeCCCC--------eEE-eeccccEEEEeEEEECCCCCCCCC------CcCCCCCccEEEEec
Q 011615 195 LIEVMFSDNVQISNLTLIDSPSW--------NVH-PVYSSNVLIQGLTIRAPIDSPNTD------GINPDSCTNTRIEDN 259 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~~~--------~i~-~~~~~nv~i~~~~i~~~~~~~n~D------GI~~~~s~nV~I~n~ 259 (481)
+......+++..+||+|+|+... .+- ....+.+.+.+|+|....+-...+ +...+......+++|
T Consensus 199 ATv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~C 278 (422)
T PRK10531 199 AVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNS 278 (422)
T ss_pred EEEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeC
Confidence 45556889999999999998542 111 235677777788777644311111 111112235667777
Q ss_pred EEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCC----ce-EEeccCcCCCEEEEEEEeeEEEcC
Q 011615 260 YIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDS----AA-IALGSEMSGGIKDVRAEDITAINT 326 (481)
Q Consensus 260 ~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~----~g-isIGs~~~~~v~nI~v~n~~~~~~ 326 (481)
.|...=|-| .| .-...++||++..-.. .| |.-.+.....-....|.||++.+.
T Consensus 279 yIeG~VDFI---FG-----------~g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 279 YIEGDVDFV---FG-----------RGAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred EEeecccEE---cc-----------CceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecC
Confidence 777643433 11 2355666666654210 11 111111122334677777777664
No 47
>PLN02304 probable pectinesterase
Probab=97.13 E-value=0.15 Score=51.74 Aligned_cols=47 Identities=11% Similarity=0.263 Sum_probs=29.8
Q ss_pred CCccchHHHHHHHHHHhhhcccCCCcEEEeCCCcceeeeEEe---ccceeEEE
Q 011615 67 DGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNL---TSHFTLYI 116 (481)
Q Consensus 67 DG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl~~~i~l---~s~~~l~l 116 (481)
||.. |-.-||+||+++.+. ....-+|+|.+|+|. ..+.+ +.+++|..
T Consensus 82 dGsG-df~TIQ~AIdavP~~-~~~r~vI~Ik~GvY~-EkV~Ip~~K~~Itl~G 131 (379)
T PLN02304 82 NGCC-NFTTVQSAVDAVGNF-SQKRNVIWINSGIYY-EKVTVPKTKPNITFQG 131 (379)
T ss_pred CCCC-CccCHHHHHhhCccc-CCCcEEEEEeCeEeE-EEEEECCCCCcEEEEe
Confidence 4433 366799999998751 123457999999996 33444 34555543
No 48
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.10 E-value=0.087 Score=56.68 Aligned_cols=139 Identities=11% Similarity=0.095 Sum_probs=79.0
Q ss_pred EEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeec
Q 011615 197 EVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVK 271 (481)
Q Consensus 197 ~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~ 271 (481)
.....+++..+|++|+|.... .+- ....+...+.+|+|.... |-+... ...-..++|.|...=|-|
T Consensus 340 ~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q-----DTLy~~-~~rq~y~~C~I~GtvDFI--- 410 (565)
T PLN02468 340 FAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQ-----DTLYAH-AQRQFYRECNIYGTVDFI--- 410 (565)
T ss_pred eeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEecc-----chhccC-CCceEEEeeEEeccccee---
Confidence 344567899999999987532 122 235778888888888743 333333 234567888887654432
Q ss_pred CCCCccCcccCCceeeEEEEEEEEeCCC-----CceEEecc-CcCCCEEEEEEEeeEEEcCCceEEEEeecCCC-ceeec
Q 011615 272 SGWDEYGIKVGMPTQHLIIRRLICISPD-----SAAIALGS-EMSGGIKDVRAEDITAINTQSGVRIKTAVGRG-AYVKE 344 (481)
Q Consensus 272 sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gisIGs-~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~-g~v~n 344 (481)
.| .-...++||.+..-. ...|.--+ .....-..+.|.||++......-..+++-|+. .....
T Consensus 411 FG-----------~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~yLGRPW~~~sr 479 (565)
T PLN02468 411 FG-----------NSAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLGDLTSVKTFLGRPWKNYST 479 (565)
T ss_pred ec-----------cceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCCCccccceeeecCCCCCce
Confidence 22 356677777776421 12233322 12233457888888888653221233333332 33445
Q ss_pred EEEEeeEEccc
Q 011615 345 IYVRRMTMKTM 355 (481)
Q Consensus 345 I~f~ni~~~~~ 355 (481)
+.|.+..|.+.
T Consensus 480 ~v~~~s~~~~~ 490 (565)
T PLN02468 480 TVIMHSMMGSL 490 (565)
T ss_pred EEEEecccCCe
Confidence 77777777663
No 49
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.05 E-value=0.13 Score=54.52 Aligned_cols=135 Identities=10% Similarity=0.093 Sum_probs=72.1
Q ss_pred eEEEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceee
Q 011615 195 LIEVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVA 269 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~ia 269 (481)
+-.....+++..+|++|+|.... .+- ....+...+.+|++.... |-+... ...-..++|+|...=|-|
T Consensus 306 aTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQ-----DTLy~~-~~Rqyy~~C~I~GtVDFI- 378 (529)
T PLN02170 306 ATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQ-----DSLYTH-SKRQFYRETDITGTVDFI- 378 (529)
T ss_pred eEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccC-----CcceeC-CCCEEEEeeEEcccccee-
Confidence 44556678899999999997432 122 234677778888887643 333322 234566777777643332
Q ss_pred ecCCCCccCcccCCceeeEEEEEEEEeCCCC----ceEEecc-CcCCCEEEEEEEeeEEEcCCceEEEEeecCCC-ceee
Q 011615 270 VKSGWDEYGIKVGMPTQHLIIRRLICISPDS----AAIALGS-EMSGGIKDVRAEDITAINTQSGVRIKTAVGRG-AYVK 343 (481)
Q Consensus 270 i~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~----~gisIGs-~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~-g~v~ 343 (481)
-| .-...++||.+..-.. .-|.--+ .....-..+.|.||++.+.. +++-|+. ..-.
T Consensus 379 --FG-----------~a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~-----~~yLGRPW~~ys 440 (529)
T PLN02170 379 --FG-----------NSAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES-----MTYLGRPWKEYS 440 (529)
T ss_pred --cc-----------cceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC-----ceeeeCCCCCCc
Confidence 11 2346666666654211 1122211 11123346777777777643 2222221 2245
Q ss_pred cEEEEeeEEcc
Q 011615 344 EIYVRRMTMKT 354 (481)
Q Consensus 344 nI~f~ni~~~~ 354 (481)
.+.|.+..|.+
T Consensus 441 rvVf~~t~l~~ 451 (529)
T PLN02170 441 RTVVMQSFIDG 451 (529)
T ss_pred eEEEEecccCC
Confidence 56677766665
No 50
>PLN02432 putative pectinesterase
Probab=97.01 E-value=0.21 Score=49.21 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHhhhcccCCCcEEEeCCCcce
Q 011615 72 NTKAFNTAISNLSKYAADGGAQLIVPPGKWL 102 (481)
Q Consensus 72 dt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl 102 (481)
|-.-||+||+++... ....-+|+|.+|+|.
T Consensus 22 ~f~TIq~Aida~p~~-~~~~~~I~I~~G~Y~ 51 (293)
T PLN02432 22 DFRKIQDAIDAVPSN-NSQLVFIWVKPGIYR 51 (293)
T ss_pred CccCHHHHHhhcccc-CCceEEEEEeCceeE
Confidence 477799999998751 112357999999994
No 51
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=96.99 E-value=0.15 Score=54.77 Aligned_cols=112 Identities=11% Similarity=0.060 Sum_probs=60.6
Q ss_pred eEEEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceee
Q 011615 195 LIEVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVA 269 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~ia 269 (481)
+-.....+++..+|++|+|...- .+- -...+.+.+.+|+|.... |-+... +.....++|.|...=|-|
T Consensus 323 aT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~rq~y~~C~I~GtVDFI- 395 (553)
T PLN02708 323 ATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQ-----DTLYAH-SLRQFYKSCRIQGNVDFI- 395 (553)
T ss_pred EEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecc-----ccceeC-CCceEEEeeEEeecCCEE-
Confidence 33445677899999999997532 122 234667777777777643 333332 234456777776643432
Q ss_pred ecCCCCccCcccCCceeeEEEEEEEEeCC---------CCceEEecc-CcCCCEEEEEEEeeEEEcC
Q 011615 270 VKSGWDEYGIKVGMPTQHLIIRRLICISP---------DSAAIALGS-EMSGGIKDVRAEDITAINT 326 (481)
Q Consensus 270 i~sg~~~~g~~~~~~s~nI~I~n~~~~~~---------~~~gisIGs-~~~~~v~nI~v~n~~~~~~ 326 (481)
.| .-...++||.+..- ....|..-+ .....-..+.|.||++.+.
T Consensus 396 --FG-----------~a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 396 --FG-----------NSAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred --ec-----------CceEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecC
Confidence 11 34566666666521 012233321 1122344677777777654
No 52
>PLN02665 pectinesterase family protein
Probab=96.99 E-value=0.38 Score=48.90 Aligned_cols=137 Identities=11% Similarity=0.046 Sum_probs=70.5
Q ss_pred eEEEEeeccEEEEeeEEeeCCC---------CeEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecC
Q 011615 195 LIEVMFSDNVQISNLTLIDSPS---------WNVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSG 264 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~~---------~~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~g 264 (481)
+-....++++..+||+|+|+.. -.+- ....+...+.+|++.... |-+.. ....-..++|.|...
T Consensus 147 aTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~Q-----DTL~~-~~gr~yf~~CyIeG~ 220 (366)
T PLN02665 147 ATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQ-----DTLCD-DKGRHFFKDCYIEGT 220 (366)
T ss_pred EEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceecccc-----ceeEe-CCCCEEEEeeEEeec
Confidence 3445567889999999998632 1111 224566777777777633 22222 123456677777665
Q ss_pred CceeeecCCCCccCcccCCceeeEEEEEEEEeCCCC---ceEEeccC-cCCCEEEEEEEeeEEEcCCceEEEE-eecCCC
Q 011615 265 DDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDS---AAIALGSE-MSGGIKDVRAEDITAINTQSGVRIK-TAVGRG 339 (481)
Q Consensus 265 DD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~---~gisIGs~-~~~~v~nI~v~n~~~~~~~~Gi~Ik-t~~g~~ 339 (481)
=|-| . | .-...+++|++..-.. ..|.--+. ....-....|.||++.+....+.+. .|
T Consensus 221 VDFI-F--G-----------~g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yLGRpW---- 282 (366)
T PLN02665 221 VDFI-F--G-----------SGKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYLGRAW---- 282 (366)
T ss_pred ccee-c--c-----------ccceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceeecCCC----
Confidence 4433 1 1 2344666666664211 11222111 1112345677777777653223331 12
Q ss_pred ceeecEEEEeeEEccc
Q 011615 340 AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 340 g~v~nI~f~ni~~~~~ 355 (481)
+.-..|.|.+..|.+.
T Consensus 283 ~~ysrvVf~~t~m~~~ 298 (366)
T PLN02665 283 MSRPRVVFAYTEMSSV 298 (366)
T ss_pred CCcceEEEEccccCCe
Confidence 2234677777777653
No 53
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.98 E-value=0.00058 Score=49.39 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=22.6
Q ss_pred ccCCCccchHHHHHHHHHHhhhcccCCCcEEEeCCC-cceeeeEEe
Q 011615 64 GVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPG-KWLTGSFNL 108 (481)
Q Consensus 64 A~gDG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G-~Yl~~~i~l 108 (481)
|+|||+||||+||.+|+++. ..+.++=-+| ||.+.++.=
T Consensus 1 A~GDGvtdDt~A~~a~l~a~------~~g~~IDg~GlTykVs~lPd 40 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS------PVGRKIDGAGLTYKVSSLPD 40 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS-------TTS-EE-TT-EEEESS---
T ss_pred CCCccccCcHHHHHHHHhcc------CCCeEEecCCceEEEeeCcc
Confidence 78999999999999999985 3344444555 687665543
No 54
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=96.98 E-value=0.13 Score=54.67 Aligned_cols=140 Identities=9% Similarity=0.019 Sum_probs=74.4
Q ss_pred EEEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeee
Q 011615 196 IEVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAV 270 (481)
Q Consensus 196 i~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai 270 (481)
-.....+++..+|++|+|+..- .+- ....+...+.+|+|.... |-+... ...-..++|+|...=|-|
T Consensus 287 T~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-- 358 (520)
T PLN02201 287 TFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQ-----DTLYTH-TMRQFYRECRITGTVDFI-- 358 (520)
T ss_pred EEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccC-----CeeEeC-CCCEEEEeeEEeecccEE--
Confidence 3445577889999999997431 122 234677778888887633 333332 233566777777654432
Q ss_pred cCCCCccCcccCCceeeEEEEEEEEeCCC-----CceEEeccC-cCCCEEEEEEEeeEEEcCCceEE----EEeecCCC-
Q 011615 271 KSGWDEYGIKVGMPTQHLIIRRLICISPD-----SAAIALGSE-MSGGIKDVRAEDITAINTQSGVR----IKTAVGRG- 339 (481)
Q Consensus 271 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gisIGs~-~~~~v~nI~v~n~~~~~~~~Gi~----Ikt~~g~~- 339 (481)
-| .-...++||++..-. ...|.--+. ....-..+.|.||++.+...... .+++-|+.
T Consensus 359 -FG-----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~~~~~~~~~~~~~yLGRPW 426 (520)
T PLN02201 359 -FG-----------DATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISADTDLLPYLNTTATYLGRPW 426 (520)
T ss_pred -ec-----------CceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecCccccccccccceEeecCC
Confidence 11 345667777776411 122332221 12234567778888766432111 12222222
Q ss_pred ceeecEEEEeeEEccc
Q 011615 340 AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 340 g~v~nI~f~ni~~~~~ 355 (481)
+....+.|.+..|.++
T Consensus 427 ~~ysrvv~~~t~l~~~ 442 (520)
T PLN02201 427 KLYSRTVFMQNYMSDA 442 (520)
T ss_pred CCCceEEEEecCcCCe
Confidence 3345677777777664
No 55
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=96.96 E-value=0.18 Score=53.54 Aligned_cols=141 Identities=9% Similarity=0.034 Sum_probs=77.6
Q ss_pred eEEEEeeccEEEEeeEEeeCCCC----eEEe-eccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceee
Q 011615 195 LIEVMFSDNVQISNLTLIDSPSW----NVHP-VYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVA 269 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~~~----~i~~-~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~ia 269 (481)
+-.....+++..+|++|.|.... .+-+ ...+...+.+|+|.... |-+... ...-..++|+|...=|-|
T Consensus 298 aT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~IeGtVDFI- 370 (530)
T PLN02933 298 ATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQ-----DTLYVH-SAKQFYRECDIYGTIDFI- 370 (530)
T ss_pred eEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecc-----cccccC-CCceEEEeeEEeccccee-
Confidence 34455677899999999997532 2222 35777888888888743 333332 234577888887643332
Q ss_pred ecCCCCccCcccCCceeeEEEEEEEEeCCC-----CceEEeccC-cCCCEEEEEEEeeEEEcCCceEE----EEeecCCC
Q 011615 270 VKSGWDEYGIKVGMPTQHLIIRRLICISPD-----SAAIALGSE-MSGGIKDVRAEDITAINTQSGVR----IKTAVGRG 339 (481)
Q Consensus 270 i~sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gisIGs~-~~~~v~nI~v~n~~~~~~~~Gi~----Ikt~~g~~ 339 (481)
.| .-...++||.+..-. ...|.--+. ....-..+.|.||++.+....+. .+++-|+.
T Consensus 371 --FG-----------~a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~yLGRP 437 (530)
T PLN02933 371 --FG-----------NAAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAAPDLIPVKENFKAYLGRP 437 (530)
T ss_pred --cc-----------CceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceEeccC
Confidence 22 234666777775421 112322221 12234577888888876432111 12222322
Q ss_pred -ceeecEEEEeeEEccc
Q 011615 340 -AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 340 -g~v~nI~f~ni~~~~~ 355 (481)
..-..+.|.+..|.+.
T Consensus 438 W~~ysrvVf~~s~l~~~ 454 (530)
T PLN02933 438 WRKYSRTVIIKSFIDDL 454 (530)
T ss_pred CCCCceEEEEecccCCe
Confidence 3345677777777663
No 56
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=96.94 E-value=0.15 Score=55.72 Aligned_cols=140 Identities=11% Similarity=0.085 Sum_probs=85.9
Q ss_pred EEEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeee
Q 011615 196 IEVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAV 270 (481)
Q Consensus 196 i~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai 270 (481)
-.....+++..+|++|+|...- .+- ....+...+.+|+|.... |-+... ..+-..++|.|...=|-|
T Consensus 331 T~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-- 402 (670)
T PLN02217 331 TVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQ-----DTLYAH-SHRQFYRDCTISGTIDFL-- 402 (670)
T ss_pred EEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeecc-----chhccC-CCcEEEEeCEEEEeccEE--
Confidence 3344578899999999997531 222 235788999999998743 434433 345688999998754433
Q ss_pred cCCCCccCcccCCceeeEEEEEEEEeCCC-----CceEEeccC-cCCCEEEEEEEeeEEEcCCceEE----EEeecCCC-
Q 011615 271 KSGWDEYGIKVGMPTQHLIIRRLICISPD-----SAAIALGSE-MSGGIKDVRAEDITAINTQSGVR----IKTAVGRG- 339 (481)
Q Consensus 271 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gisIGs~-~~~~v~nI~v~n~~~~~~~~Gi~----Ikt~~g~~- 339 (481)
.| .-...++||.+..-. ..-|.--+. ....-..+.|.||++.+...-+. .+++-|+.
T Consensus 403 -FG-----------~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW 470 (670)
T PLN02217 403 -FG-----------DAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPW 470 (670)
T ss_pred -ec-----------CceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCccccccccccceeeccCC
Confidence 22 346788888887521 111222211 12335689999999988642111 12333332
Q ss_pred ceeecEEEEeeEEccc
Q 011615 340 AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 340 g~v~nI~f~ni~~~~~ 355 (481)
.....+.|.+..|.+.
T Consensus 471 ~~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 471 KEYSRTIIMNTFIPDF 486 (670)
T ss_pred CCCceEEEEecccCCe
Confidence 3457788888888774
No 57
>PLN02671 pectinesterase
Probab=96.93 E-value=0.13 Score=51.89 Aligned_cols=43 Identities=9% Similarity=0.224 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhhhcccCCCcEEEeCCCcceeeeEEe---ccceeEEE
Q 011615 72 NTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNL---TSHFTLYI 116 (481)
Q Consensus 72 dt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl~~~i~l---~s~~~l~l 116 (481)
|-.-||+||+++... ....-+|+|-+|+|. ..+.+ +.+++|..
T Consensus 70 df~TIQ~AIdavP~~-~~~~~~I~Ik~GvY~-EkV~I~~~k~~Itl~G 115 (359)
T PLN02671 70 DSLTVQGAVDMVPDY-NSQRVKIYILPGIYR-EKVLVPKSKPYISFIG 115 (359)
T ss_pred CccCHHHHHHhchhc-CCccEEEEEeCceEE-EEEEECCCCCeEEEEe
Confidence 467799999998752 122458999999996 33444 34455543
No 58
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=96.91 E-value=0.14 Score=55.00 Aligned_cols=140 Identities=11% Similarity=0.036 Sum_probs=78.9
Q ss_pred EEEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeee
Q 011615 196 IEVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAV 270 (481)
Q Consensus 196 i~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai 270 (481)
-.....+++..+|++|+|.... .+- ....+...+.+|+|.... |-+... ...-..++|+|...=|-|
T Consensus 334 T~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-- 405 (566)
T PLN02713 334 TFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQ-----DTLYTH-SLRQFYRECDIYGTVDFI-- 405 (566)
T ss_pred eEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCC-----cceEEC-CCCEEEEeeEEeccccee--
Confidence 3344568999999999996432 122 235777888888888743 333332 344678888887654433
Q ss_pred cCCCCccCcccCCceeeEEEEEEEEeCCC-----CceEEecc-CcCCCEEEEEEEeeEEEcCCceE----EEEeecCCC-
Q 011615 271 KSGWDEYGIKVGMPTQHLIIRRLICISPD-----SAAIALGS-EMSGGIKDVRAEDITAINTQSGV----RIKTAVGRG- 339 (481)
Q Consensus 271 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gisIGs-~~~~~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~- 339 (481)
.| .-...++||.+..-. ...|.--+ .....-..+.|.||++....... ..+++-|+.
T Consensus 406 -FG-----------~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW 473 (566)
T PLN02713 406 -FG-----------NAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPW 473 (566)
T ss_pred -cc-----------cceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCCcccccccccceeeecCC
Confidence 22 356677777776421 11232221 12223457888888887653210 122332322
Q ss_pred ceeecEEEEeeEEccc
Q 011615 340 AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 340 g~v~nI~f~ni~~~~~ 355 (481)
.....+.|.+..|.+.
T Consensus 474 ~~ysr~V~~~s~~~~~ 489 (566)
T PLN02713 474 KEYSRTVVMQSYIDGL 489 (566)
T ss_pred CCcceEEEEecccCCe
Confidence 2345677777777663
No 59
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=96.83 E-value=0.29 Score=52.47 Aligned_cols=141 Identities=8% Similarity=-0.026 Sum_probs=81.8
Q ss_pred eEEEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceee
Q 011615 195 LIEVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVA 269 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~ia 269 (481)
+-.....+++..+|++|+|.... .+- ....+...+.+|+|.... |-+... +..-..++|.|...=|-|
T Consensus 306 aT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQ-----DTLy~~-~~rq~y~~c~I~GtVDFI- 378 (538)
T PLN03043 306 STFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQ-----DTLYVH-SLRQFYRECDIYGTVDFI- 378 (538)
T ss_pred eEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccC-----cccccC-CCcEEEEeeEEeeccceE-
Confidence 34455668999999999997532 222 235777888899888743 333333 344678888887654433
Q ss_pred ecCCCCccCcccCCceeeEEEEEEEEeCCC-----CceEEeccC-cCCCEEEEEEEeeEEEcCCceE----EEEeecCCC
Q 011615 270 VKSGWDEYGIKVGMPTQHLIIRRLICISPD-----SAAIALGSE-MSGGIKDVRAEDITAINTQSGV----RIKTAVGRG 339 (481)
Q Consensus 270 i~sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gisIGs~-~~~~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~ 339 (481)
.| .-...++||.+..-. ...|.-.+. ....-..+.|.||++.+...-. ..+++-|+.
T Consensus 379 --FG-----------~a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGRp 445 (538)
T PLN03043 379 --FG-----------NAAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAAPDLAMDPNSTMNFLGRP 445 (538)
T ss_pred --ee-----------cceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecCCcccccccccceeccCC
Confidence 12 346677777776521 123333221 1223457888888887653210 112333332
Q ss_pred -ceeecEEEEeeEEccc
Q 011615 340 -AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 340 -g~v~nI~f~ni~~~~~ 355 (481)
.....+.|.+..|.+.
T Consensus 446 W~~ysr~v~~~s~i~~~ 462 (538)
T PLN03043 446 WKPYSRTVYMQSYIGDL 462 (538)
T ss_pred CCCCceEEEEecccCCe
Confidence 3345677777777664
No 60
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.83 E-value=0.0076 Score=56.24 Aligned_cols=127 Identities=18% Similarity=0.120 Sum_probs=77.8
Q ss_pred EEE-EeeccEEEEeeEEee---------------CCCCeEEeeccccEEEEeEEEECCCC---CCCCCC-cCCC-CCccE
Q 011615 196 IEV-MFSDNVQISNLTLID---------------SPSWNVHPVYSSNVLIQGLTIRAPID---SPNTDG-INPD-SCTNT 254 (481)
Q Consensus 196 i~~-~~~~nv~I~g~~i~n---------------s~~~~i~~~~~~nv~i~~~~i~~~~~---~~n~DG-I~~~-~s~nV 254 (481)
+.+ ..++||.|++|+|++ .....+.+..+++|.|++|++..... ....|| +++. .+++|
T Consensus 39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v 118 (200)
T PF00544_consen 39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV 118 (200)
T ss_dssp EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence 444 489999999999998 24457889999999999999998521 111455 4554 58999
Q ss_pred EEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcC-CceEEE
Q 011615 255 RIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINT-QSGVRI 332 (481)
Q Consensus 255 ~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~-~~Gi~I 332 (481)
+|++|.|...+.+..+++. +.. .... ..++++.+|.+.....+.-.+. .-.+++-|+.+.+. ..++..
T Consensus 119 TiS~n~f~~~~k~~l~G~~-d~~--~~~~-~~~vT~hhN~f~~~~~R~P~~r------~G~~Hv~NN~~~~~~~y~i~~ 187 (200)
T PF00544_consen 119 TISNNIFDNHNKTMLIGSS-DSN--STDR-GLRVTFHHNYFANTNSRNPRVR------FGYVHVYNNYYYNWSGYAIGA 187 (200)
T ss_dssp EEES-EEEEEEETCEESSC-TTC--GGGT-TEEEEEES-EEEEEEE-TTEEC------SCEEEEES-EEEEECSESEEE
T ss_pred EEEchhccccccccccCCC-CCc--cccC-CceEEEEeEEECchhhCCCccc------ccEEEEEEeeeECCCCEEEEc
Confidence 9999999886655555442 111 1122 3899999999875321111111 11588888877653 345554
No 61
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=96.82 E-value=0.22 Score=53.36 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=76.6
Q ss_pred eEEEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceee
Q 011615 195 LIEVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVA 269 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~ia 269 (481)
+-.....+++..+|++|+|.... .+- ....+...+.+|+|.... |-+... +..-..++|.|...=|-|
T Consensus 316 aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI- 388 (548)
T PLN02301 316 ATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQ-----DTLYAH-SLRQFYRDSYITGTVDFI- 388 (548)
T ss_pred EEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecc-----ccceec-CCcEEEEeeEEEecccee-
Confidence 34445668899999999997532 222 235677888888888743 333332 234577888887654432
Q ss_pred ecCCCCccCcccCCceeeEEEEEEEEeCCC-----CceEEecc-CcCCCEEEEEEEeeEEEcCCceE----EEEeecCCC
Q 011615 270 VKSGWDEYGIKVGMPTQHLIIRRLICISPD-----SAAIALGS-EMSGGIKDVRAEDITAINTQSGV----RIKTAVGRG 339 (481)
Q Consensus 270 i~sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gisIGs-~~~~~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~ 339 (481)
-| .-...++||++..-. ..-|.--+ .....-..+.|.||++.+...-. ..+++-|+.
T Consensus 389 --FG-----------~a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~~~~~~~~~~~~~yLGRP 455 (548)
T PLN02301 389 --FG-----------NAAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIASSDLEPVKGSFKTYLGRP 455 (548)
T ss_pred --cc-----------cceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecCccccccccccceeeecC
Confidence 12 345667777776421 11232221 12223457788888887653211 112222322
Q ss_pred -ceeecEEEEeeEEccc
Q 011615 340 -AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 340 -g~v~nI~f~ni~~~~~ 355 (481)
.....+.|.+..|.+.
T Consensus 456 W~~ysr~V~~~s~l~~~ 472 (548)
T PLN02301 456 WKEYSRTVVMQSYIDDH 472 (548)
T ss_pred CCCCceEEEEecccCCe
Confidence 2345666767666653
No 62
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.82 E-value=0.24 Score=53.53 Aligned_cols=141 Identities=9% Similarity=0.022 Sum_probs=79.9
Q ss_pred eEEEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceee
Q 011615 195 LIEVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVA 269 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~ia 269 (481)
+-.....+++..+|++|+|...- .+- ....+...+.+|+|.... |-+... ...-..++|+|...=|-|
T Consensus 353 aT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI- 425 (587)
T PLN02484 353 ASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQ-----DTLYVH-SNRQFFRECDIYGTVDFI- 425 (587)
T ss_pred EEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccC-----cccccC-CCcEEEEecEEEecccee-
Confidence 33445677899999999987431 222 235778888888888743 333332 344577888887653432
Q ss_pred ecCCCCccCcccCCceeeEEEEEEEEeCCC-----CceEEeccC-cCCCEEEEEEEeeEEEcCCceE----EEEeecCCC
Q 011615 270 VKSGWDEYGIKVGMPTQHLIIRRLICISPD-----SAAIALGSE-MSGGIKDVRAEDITAINTQSGV----RIKTAVGRG 339 (481)
Q Consensus 270 i~sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gisIGs~-~~~~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~ 339 (481)
.| .-...++||.+..-. ..-|.--+. ....-..+.|.||++.+...-. ..+++-|+.
T Consensus 426 --FG-----------~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRP 492 (587)
T PLN02484 426 --FG-----------NAAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAASDLAASKGSFPTYLGRP 492 (587)
T ss_pred --cc-----------cceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCCccccccCccceeccCC
Confidence 22 346677777776421 122332221 1123457888888887653210 122333332
Q ss_pred -ceeecEEEEeeEEccc
Q 011615 340 -AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 340 -g~v~nI~f~ni~~~~~ 355 (481)
.....+.|.+..|.+.
T Consensus 493 W~~ysrvV~~~s~i~~~ 509 (587)
T PLN02484 493 WKLYSRTVYMMSYMGDH 509 (587)
T ss_pred CCCCceEEEEecccCCe
Confidence 3356677777777764
No 63
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=96.80 E-value=0.17 Score=54.01 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=37.9
Q ss_pred eEEEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCc
Q 011615 195 LIEVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDD 266 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD 266 (481)
+-.....+++..+|++|+|.... .+- ....+.+.+.+|+|.... |-+... ...-..++|.|...=|
T Consensus 312 aT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~Q-----DTLy~~-~~rqyy~~C~I~GtVD 382 (537)
T PLN02506 312 ATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQ-----DTLYAH-SLRQFYRECEIYGTID 382 (537)
T ss_pred eEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeccc-----ccceec-CCceEEEeeEEecccc
Confidence 34456778899999999987432 111 224666777777776533 222222 2334666777665433
No 64
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=96.75 E-value=0.26 Score=52.83 Aligned_cols=139 Identities=13% Similarity=0.104 Sum_probs=73.3
Q ss_pred EEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeec
Q 011615 197 EVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVK 271 (481)
Q Consensus 197 ~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~ 271 (481)
.....+++..+|++|+|.... .+- ....+.+.+.+|+|.... |-+... +..-..++|.|...=|-|
T Consensus 312 ~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI--- 382 (541)
T PLN02416 312 LAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQ-----DTLYVH-SFRQFYRECDIYGTIDYI--- 382 (541)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEeccc-----chhccC-CCceEEEeeEEeecccee---
Confidence 344578899999999997542 111 234677778888887643 333322 344577778877654433
Q ss_pred CCCCccCcccCCceeeEEEEEEEEeCCCC-----ceEEeccC-cCCCEEEEEEEeeEEEcCCceE----EEEeecCCC-c
Q 011615 272 SGWDEYGIKVGMPTQHLIIRRLICISPDS-----AAIALGSE-MSGGIKDVRAEDITAINTQSGV----RIKTAVGRG-A 340 (481)
Q Consensus 272 sg~~~~g~~~~~~s~nI~I~n~~~~~~~~-----~gisIGs~-~~~~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~-g 340 (481)
-| .-...++||++..-.. .-|.--+. ....-..+.|.||++.+...-. ..+++-|+. .
T Consensus 383 FG-----------~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~ 451 (541)
T PLN02416 383 FG-----------NAAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILATEDLYSNSNSVKSYLGRPWR 451 (541)
T ss_pred ec-----------cceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecCCccccccccccccccCCCC
Confidence 11 3456667777654210 01111111 1122356777888877543110 123333332 2
Q ss_pred eeecEEEEeeEEccc
Q 011615 341 YVKEIYVRRMTMKTM 355 (481)
Q Consensus 341 ~v~nI~f~ni~~~~~ 355 (481)
.-..+.|.+..|.+.
T Consensus 452 ~~sr~v~~~s~i~~~ 466 (541)
T PLN02416 452 VYSRTVVLESYIDDF 466 (541)
T ss_pred CCccEEEEecccCCe
Confidence 345666777666653
No 65
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.72 E-value=0.26 Score=53.30 Aligned_cols=140 Identities=9% Similarity=0.019 Sum_probs=75.1
Q ss_pred EEEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeee
Q 011615 196 IEVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAV 270 (481)
Q Consensus 196 i~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai 270 (481)
-.....+++..+|++|+|.... .+- ....+...+.+|+|.... |-+... +..-..++|.|...=|-|
T Consensus 356 t~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~Q-----DTLy~~-~~rq~y~~c~I~GtvDFI-- 427 (587)
T PLN02313 356 TVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQ-----DTLYVH-SNRQFFVKCHITGTVDFI-- 427 (587)
T ss_pred EEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEeccc-----chhccC-CCcEEEEeeEEeecccee--
Confidence 3445667899999999997532 222 235677788888887643 333332 234577788877654433
Q ss_pred cCCCCccCcccCCceeeEEEEEEEEeCCC-----CceEEecc-CcCCCEEEEEEEeeEEEcCCceE----EEEeecCCC-
Q 011615 271 KSGWDEYGIKVGMPTQHLIIRRLICISPD-----SAAIALGS-EMSGGIKDVRAEDITAINTQSGV----RIKTAVGRG- 339 (481)
Q Consensus 271 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gisIGs-~~~~~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~- 339 (481)
-| .-...++||.+..-. ..-|.--+ .....-..+.|.||++.+...-. ..+++-|+.
T Consensus 428 -FG-----------~a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~~~~~~~~~~~~~yLGRPW 495 (587)
T PLN02313 428 -FG-----------NAAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRPW 495 (587)
T ss_pred -cc-----------ceeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecCCccccccccchhhccCCC
Confidence 12 345677777776421 01122211 12223457778888887653211 112222322
Q ss_pred ceeecEEEEeeEEccc
Q 011615 340 AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 340 g~v~nI~f~ni~~~~~ 355 (481)
.....+.|.+..|.+.
T Consensus 496 ~~ysr~v~~~s~i~~~ 511 (587)
T PLN02313 496 KEYSRTVIMQSDISDV 511 (587)
T ss_pred CCCccEEEEecccCCe
Confidence 2334566666666553
No 66
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.72 E-value=0.33 Score=52.56 Aligned_cols=140 Identities=10% Similarity=0.078 Sum_probs=81.9
Q ss_pred EEEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeee
Q 011615 196 IEVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAV 270 (481)
Q Consensus 196 i~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai 270 (481)
-.....+++..+|++|+|...- .+- ....+...+.+|+|.... |-+... ...-..++|+|...=|-|
T Consensus 366 T~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-- 437 (596)
T PLN02745 366 TFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQ-----DTLYAQ-THRQFYRSCVITGTIDFI-- 437 (596)
T ss_pred EEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecc-----cccccC-CCcEEEEeeEEEeeccEE--
Confidence 3344678899999999996431 122 235788889999998744 333332 345678888888754432
Q ss_pred cCCCCccCcccCCceeeEEEEEEEEeCCC-----CceEEeccC-cCCCEEEEEEEeeEEEcCCceEE----EEeecCCC-
Q 011615 271 KSGWDEYGIKVGMPTQHLIIRRLICISPD-----SAAIALGSE-MSGGIKDVRAEDITAINTQSGVR----IKTAVGRG- 339 (481)
Q Consensus 271 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gisIGs~-~~~~v~nI~v~n~~~~~~~~Gi~----Ikt~~g~~- 339 (481)
.| .-...++||.+..-. ..-|.--+. ....-..+.|.||++.+...... .+++-|+.
T Consensus 438 -FG-----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRPW 505 (596)
T PLN02745 438 -FG-----------DAAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDEDLKPVKTEVKSYLGRPW 505 (596)
T ss_pred -ec-----------ceeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCccccccccccceeccCCC
Confidence 22 356777888876521 122322221 12234678888888887532111 23333332
Q ss_pred ceeecEEEEeeEEccc
Q 011615 340 AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 340 g~v~nI~f~ni~~~~~ 355 (481)
.....+.|.+..|.+.
T Consensus 506 ~~ysrvv~~~s~l~~~ 521 (596)
T PLN02745 506 KEFSRTIVMESTIEDV 521 (596)
T ss_pred CCCccEEEEecccCCe
Confidence 3356777777777763
No 67
>PLN02916 pectinesterase family protein
Probab=96.70 E-value=0.35 Score=51.07 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=72.4
Q ss_pred eEEEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceee
Q 011615 195 LIEVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVA 269 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~ia 269 (481)
+-.....+++..+|++|+|.... .+- ....+...+.+|+|.... |-+... +..-..++|.|...=|-|
T Consensus 270 AT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI- 342 (502)
T PLN02916 270 ATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQ-----DTLFVH-SLRQFYRDCHIYGTIDFI- 342 (502)
T ss_pred EEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccC-----ceeEeC-CCCEEEEecEEeccccee-
Confidence 34455667889999999987432 122 224667777777777633 333322 234566777777643332
Q ss_pred ecCCCCccCcccCCceeeEEEEEEEEeCCC-----CceEEeccC-cCCCEEEEEEEeeEEEcCCceE----EEEeecCCC
Q 011615 270 VKSGWDEYGIKVGMPTQHLIIRRLICISPD-----SAAIALGSE-MSGGIKDVRAEDITAINTQSGV----RIKTAVGRG 339 (481)
Q Consensus 270 i~sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gisIGs~-~~~~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~ 339 (481)
.| .-...++||.+..-. ..-|.--+. ....-..+.|.||++.+..... ..+++-|+.
T Consensus 343 --FG-----------~a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~~~~~~~~g~~~~yLGRP 409 (502)
T PLN02916 343 --FG-----------DAAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRASPEFEAVKGRFKSFLGRP 409 (502)
T ss_pred --cc-----------CceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecCccccccccccceEeecC
Confidence 11 345566666665421 112222111 1123356777777777642110 112222222
Q ss_pred -ceeecEEEEeeEEccc
Q 011615 340 -AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 340 -g~v~nI~f~ni~~~~~ 355 (481)
.....+.|.+..|.+.
T Consensus 410 W~~ysrvVf~~t~~~~~ 426 (502)
T PLN02916 410 WKKYSRTVFLKTDLDGL 426 (502)
T ss_pred CCCCceEEEEecccCCe
Confidence 2345666777666653
No 68
>PLN02197 pectinesterase
Probab=96.63 E-value=0.25 Score=53.35 Aligned_cols=140 Identities=7% Similarity=0.064 Sum_probs=74.8
Q ss_pred EEEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeee
Q 011615 196 IEVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAV 270 (481)
Q Consensus 196 i~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai 270 (481)
-.....+++..+|++|+|+... .+- ....+...+.+|+|.... |-+... ...-..++|+|...=|-|
T Consensus 358 T~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQ-----DTLy~~-~~Rqyy~~C~I~GtVDFI-- 429 (588)
T PLN02197 358 TVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQ-----DTLYVN-NGRQFYRNIVVSGTVDFI-- 429 (588)
T ss_pred EEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecC-----cceEec-CCCEEEEeeEEEeccccc--
Confidence 3445678899999999996432 222 235677788888887643 333332 234577788877643332
Q ss_pred cCCCCccCcccCCceeeEEEEEEEEeCCCC-c----eEEeccCc--CCCEEEEEEEeeEEEcCCc----eEEEEeecCCC
Q 011615 271 KSGWDEYGIKVGMPTQHLIIRRLICISPDS-A----AIALGSEM--SGGIKDVRAEDITAINTQS----GVRIKTAVGRG 339 (481)
Q Consensus 271 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~-~----gisIGs~~--~~~v~nI~v~n~~~~~~~~----Gi~Ikt~~g~~ 339 (481)
.| .-...++||.+..-.. . -|.--+.. ...-..+.|.||++.+... ....+++-|+.
T Consensus 430 -FG-----------~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~~~~~~~~~~~~yLGRP 497 (588)
T PLN02197 430 -FG-----------KSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLTAERLTVASYLGRP 497 (588)
T ss_pred -cc-----------ceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCCcccccccccccccCCC
Confidence 11 2346677777653110 0 11111111 1223567788888876431 11223333332
Q ss_pred -ceeecEEEEeeEEccc
Q 011615 340 -AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 340 -g~v~nI~f~ni~~~~~ 355 (481)
.....+.|.+..|.+.
T Consensus 498 W~~ysrvV~~~s~~~~~ 514 (588)
T PLN02197 498 WKKFSTTVIISTEIGDL 514 (588)
T ss_pred CCCCceEEEEecccCCe
Confidence 3355677777777653
No 69
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=96.62 E-value=0.033 Score=55.22 Aligned_cols=133 Identities=10% Similarity=0.061 Sum_probs=68.1
Q ss_pred EEeeccEEEEeeEEeeCCCC------eEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeec
Q 011615 198 VMFSDNVQISNLTLIDSPSW------NVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVK 271 (481)
Q Consensus 198 ~~~~~nv~I~g~~i~ns~~~------~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~ 271 (481)
....+++.+++|+|+|+... .+. ...+.+.+.+|++... .|-+... ..+..++||.|...-|-|- +
T Consensus 83 ~v~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~~~g~-----QDTL~~~-~~r~y~~~c~IeG~vDFIf-G 154 (298)
T PF01095_consen 83 SVNADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCRFLGY-----QDTLYAN-GGRQYFKNCYIEGNVDFIF-G 154 (298)
T ss_dssp EE-STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEEEE-S-----TT-EEE--SSEEEEES-EEEESEEEEE-E
T ss_pred cccccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeEEccc-----cceeeec-cceeEEEeeEEEecCcEEE-C
Confidence 34578999999999996432 233 3567788888888863 3434332 3456778888887655542 1
Q ss_pred CCCCccCcccCCceeeEEEEEEEEeCCCC-----ceEEecc-CcCCCEEEEEEEeeEEEcCCc--------eEEEE-eec
Q 011615 272 SGWDEYGIKVGMPTQHLIIRRLICISPDS-----AAIALGS-EMSGGIKDVRAEDITAINTQS--------GVRIK-TAV 336 (481)
Q Consensus 272 sg~~~~g~~~~~~s~nI~I~n~~~~~~~~-----~gisIGs-~~~~~v~nI~v~n~~~~~~~~--------Gi~Ik-t~~ 336 (481)
.-...+++|++..... ..|.--+ .....-....|.||++..... ...+. .|
T Consensus 155 -------------~~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~~~~~~~~~~~~~yLGRpW- 220 (298)
T PF01095_consen 155 -------------NGTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGDSGVSPSYSDGSVYLGRPW- 220 (298)
T ss_dssp -------------SSEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEESTTTCGGCCCSTEEEE--S-
T ss_pred -------------CeeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecCccccccccceeEEecCcc-
Confidence 2345677777774211 1222211 122345577888888886531 22231 12
Q ss_pred CCCceeecEEEEeeEEccc
Q 011615 337 GRGAYVKEIYVRRMTMKTM 355 (481)
Q Consensus 337 g~~g~v~nI~f~ni~~~~~ 355 (481)
+.-..+.|.|..|.+.
T Consensus 221 ---~~~s~vvf~~t~m~~~ 236 (298)
T PF01095_consen 221 ---GPYSRVVFINTYMDDH 236 (298)
T ss_dssp ---SEETEEEEES-EE-TT
T ss_pred ---cceeeEEEEccccCCe
Confidence 2334678888888764
No 70
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.62 E-value=0.37 Score=51.63 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=74.6
Q ss_pred EEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeec
Q 011615 197 EVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVK 271 (481)
Q Consensus 197 ~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~ 271 (481)
.....+++..+|++|+|.... .+- ....+...+.+|+|.... |-+... ...-..++|.|...=|-|
T Consensus 307 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI--- 377 (539)
T PLN02995 307 AGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQ-----DTLMVH-SQRQFYRECYIYGTVDFI--- 377 (539)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEeccc-----chhccC-CCceEEEeeEEeeccceE---
Confidence 334577899999999987532 122 235677788888888643 333332 234577888887654433
Q ss_pred CCCCccCcccCCceeeEEEEEEEEeCCCC-----ceEEeccC-cCCCEEEEEEEeeEEEcCCceE----EEEeecCCC-c
Q 011615 272 SGWDEYGIKVGMPTQHLIIRRLICISPDS-----AAIALGSE-MSGGIKDVRAEDITAINTQSGV----RIKTAVGRG-A 340 (481)
Q Consensus 272 sg~~~~g~~~~~~s~nI~I~n~~~~~~~~-----~gisIGs~-~~~~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~-g 340 (481)
-| .-...++||++..-.. .-|.--+. ....-..+.|.||++.+..... ..+++-|+. +
T Consensus 378 FG-----------~a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~ 446 (539)
T PLN02995 378 FG-----------NAAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAPDLKPVVRTVKTYMGRPWM 446 (539)
T ss_pred ec-----------ccceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCCC
Confidence 11 2456667777664210 11222111 1123457788888887643211 112333332 2
Q ss_pred eeecEEEEeeEEccc
Q 011615 341 YVKEIYVRRMTMKTM 355 (481)
Q Consensus 341 ~v~nI~f~ni~~~~~ 355 (481)
....+.|.+..|.+.
T Consensus 447 ~ysrvv~~~t~~~~~ 461 (539)
T PLN02995 447 KFSRTVVLQTYLDNV 461 (539)
T ss_pred CCcceEEEeccccCc
Confidence 344577777777653
No 71
>PLN02314 pectinesterase
Probab=96.61 E-value=0.32 Score=52.67 Aligned_cols=139 Identities=10% Similarity=0.041 Sum_probs=76.7
Q ss_pred EEEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeee
Q 011615 196 IEVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAV 270 (481)
Q Consensus 196 i~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai 270 (481)
-.....+++..+|++|+|.... .+- ....+...+.+|+|.... |-+... +..-..++|.|...=|-|
T Consensus 359 T~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~rq~y~~C~I~GtvDFI-- 430 (586)
T PLN02314 359 TFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQ-----DTLYAH-SNRQFYRDCDITGTIDFI-- 430 (586)
T ss_pred EEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEecc-----chheeC-CCCEEEEeeEEEecccee--
Confidence 3445678899999999997431 122 235677788888888643 333332 334577788887654432
Q ss_pred cCCCCccCcccCCceeeEEEEEEEEeCCC-----CceEEeccC-cCCCEEEEEEEeeEEEcCCceEEEEeecCCC-ceee
Q 011615 271 KSGWDEYGIKVGMPTQHLIIRRLICISPD-----SAAIALGSE-MSGGIKDVRAEDITAINTQSGVRIKTAVGRG-AYVK 343 (481)
Q Consensus 271 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gisIGs~-~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~-g~v~ 343 (481)
.| .-...++||.+..-. ...|.--+. ....-..+.|.||++.+... +..+++-|+. ....
T Consensus 431 -FG-----------~a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~-~~~~~yLGRpW~~ys 497 (586)
T PLN02314 431 -FG-----------NAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFGN-LTAPTYLGRPWKDFS 497 (586)
T ss_pred -cc-----------CceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCCc-ccccccccCCCCCCc
Confidence 12 345677777776421 112222221 12234577888888877532 2223333332 2344
Q ss_pred cEEEEeeEEccc
Q 011615 344 EIYVRRMTMKTM 355 (481)
Q Consensus 344 nI~f~ni~~~~~ 355 (481)
.+.|.+..|.+.
T Consensus 498 r~v~~~s~i~~~ 509 (586)
T PLN02314 498 TTVIMQSYIGSF 509 (586)
T ss_pred eEEEEecccCCc
Confidence 566777666653
No 72
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=96.35 E-value=0.8 Score=48.32 Aligned_cols=138 Identities=13% Similarity=0.093 Sum_probs=71.9
Q ss_pred EEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeec
Q 011615 197 EVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVK 271 (481)
Q Consensus 197 ~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~ 271 (481)
.....+++..+|++|+|...- .+- ....+...+.+|+|.... |-+.. .+..-..++|.|...=|-|
T Consensus 279 v~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQ-----DTLy~-~~~RqyyrdC~I~GtVDFI--- 349 (509)
T PLN02488 279 VASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQ-----DALYP-HRDRQFYRECFITGTVDFI--- 349 (509)
T ss_pred EEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccC-----cceee-CCCCEEEEeeEEeeccceE---
Confidence 344567788888999887432 122 234677777777777633 33322 2344567777777643433
Q ss_pred CCCCccCcccCCceeeEEEEEEEEeCCC-----CceEEeccCc-CCCEEEEEEEeeEEEcCCceE----EEEeecCCC-c
Q 011615 272 SGWDEYGIKVGMPTQHLIIRRLICISPD-----SAAIALGSEM-SGGIKDVRAEDITAINTQSGV----RIKTAVGRG-A 340 (481)
Q Consensus 272 sg~~~~g~~~~~~s~nI~I~n~~~~~~~-----~~gisIGs~~-~~~v~nI~v~n~~~~~~~~Gi----~Ikt~~g~~-g 340 (481)
-| .-...++||.+..-. ..-|.--+.. ...-..+.|.||++....... ..+++-|+. .
T Consensus 350 FG-----------~a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW~ 418 (509)
T PLN02488 350 CG-----------NAAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASSDLDPVKATVKTYLGRPWR 418 (509)
T ss_pred ec-----------ceEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCCcccccccccceeecCCCC
Confidence 12 345667777776421 0112222211 122346777777777653211 123333332 2
Q ss_pred eeecEEEEeeEEcc
Q 011615 341 YVKEIYVRRMTMKT 354 (481)
Q Consensus 341 ~v~nI~f~ni~~~~ 354 (481)
....+.|.+..|.+
T Consensus 419 ~ySrvVf~~s~i~~ 432 (509)
T PLN02488 419 KYSTVAVLQSFIGD 432 (509)
T ss_pred CCccEEEEeccCCC
Confidence 34556666666665
No 73
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.29 E-value=0.46 Score=48.22 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=34.6
Q ss_pred EEeecCccCCCccchHHHHHHHHHHhhhcccCCCcEEEeCCC-ccee-eeEEeccceeEEEccCcEEEec
Q 011615 58 VLTDFGGVGDGKTSNTKAFNTAISNLSKYAADGGAQLIVPPG-KWLT-GSFNLTSHFTLYIHKDALLLAS 125 (481)
Q Consensus 58 nV~dyGA~gDG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G-~Yl~-~~i~l~s~~~l~l~~ga~i~~~ 125 (481)
.|+.|=..++. | +.+||+. -++|.+-|| +|.+ +++.+++...+. ..||+++..
T Consensus 45 qvkt~~~~P~e--D----le~~I~~--------haKVaL~Pg~~Y~i~~~V~I~~~cYIi-GnGA~V~v~ 99 (386)
T PF01696_consen 45 QVKTYWMEPGE--D----LEEAIRQ--------HAKVALRPGAVYVIRKPVNIRSCCYII-GNGATVRVN 99 (386)
T ss_pred eEEEEEcCCCc--C----HHHHHHh--------cCEEEeCCCCEEEEeeeEEecceEEEE-CCCEEEEEe
Confidence 45566666653 3 5566654 235555555 6965 599999988874 578888764
No 74
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.21 E-value=0.67 Score=50.04 Aligned_cols=139 Identities=10% Similarity=0.090 Sum_probs=77.0
Q ss_pred EEEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeec
Q 011615 197 EVMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVK 271 (481)
Q Consensus 197 ~~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~ 271 (481)
.....+++..+|++|+|.... .+- ....+...+.+|+|.... |-+... +..-..++|.|...=|-|
T Consensus 342 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI--- 412 (572)
T PLN02990 342 VAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQ-----DTLYVH-SHRQFFRDCTVSGTVDFI--- 412 (572)
T ss_pred EEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccc-----chhccC-CCcEEEEeeEEecccceE---
Confidence 344567899999999997542 222 235777888888888643 333332 344567888887654433
Q ss_pred CCCCccCcccCCceeeEEEEEEEEeCCC---C--ceEEecc-CcCCCEEEEEEEeeEEEcCCceEE----EEeecCCC-c
Q 011615 272 SGWDEYGIKVGMPTQHLIIRRLICISPD---S--AAIALGS-EMSGGIKDVRAEDITAINTQSGVR----IKTAVGRG-A 340 (481)
Q Consensus 272 sg~~~~g~~~~~~s~nI~I~n~~~~~~~---~--~gisIGs-~~~~~v~nI~v~n~~~~~~~~Gi~----Ikt~~g~~-g 340 (481)
.| .-...++||.+..-. + .-|.--+ .....-..+.|.||++.+...... .+++-|+. .
T Consensus 413 FG-----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~yLGRpW~ 481 (572)
T PLN02990 413 FG-----------DAKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEPAYIPVKSINKAYLGRPWK 481 (572)
T ss_pred cc-----------CceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCccccccccccceEeecCCC
Confidence 12 345677777776421 0 1122211 111234578888888877542111 12222322 2
Q ss_pred eeecEEEEeeEEccc
Q 011615 341 YVKEIYVRRMTMKTM 355 (481)
Q Consensus 341 ~v~nI~f~ni~~~~~ 355 (481)
....+.|.+..|.+.
T Consensus 482 ~ysrvV~~~s~i~~~ 496 (572)
T PLN02990 482 EFSRTIIMGTTIDDV 496 (572)
T ss_pred CCceEEEEecccCCe
Confidence 345677777777664
No 75
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=95.88 E-value=0.084 Score=51.93 Aligned_cols=97 Identities=15% Similarity=0.052 Sum_probs=57.3
Q ss_pred CCCeeEEEEeeccEEEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeee
Q 011615 191 TRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAV 270 (481)
Q Consensus 191 ~rp~~i~~~~~~nv~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai 270 (481)
.|...|.+.++++..|.+-.+.- ...+|..+.++...+++.+++. -.-|.|...++++.|+++......-++++
T Consensus 148 ~rGnGI~vyNa~~a~V~~ndisy-~rDgIy~~~S~~~~~~gnr~~~-----~RygvHyM~t~~s~i~dn~s~~N~vG~AL 221 (408)
T COG3420 148 ERGNGIYVYNAPGALVVGNDISY-GRDGIYSDTSQHNVFKGNRFRD-----LRYGVHYMYTNDSRISDNSSRDNRVGYAL 221 (408)
T ss_pred hccCceEEEcCCCcEEEcCcccc-ccceEEEcccccceecccchhh-----eeeeEEEEeccCcEeecccccCCcceEEE
Confidence 45566777777776666655532 2345666666666666665553 23456666666666666666554444554
Q ss_pred cCCCCccCcccCCceeeEEEEEEEEeCCCCceEEe
Q 011615 271 KSGWDEYGIKVGMPTQHLIIRRLICISPDSAAIAL 305 (481)
Q Consensus 271 ~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisI 305 (481)
-- ++++.|+|+.-++..+||+-+
T Consensus 222 My------------s~~l~V~~nrS~Gnrd~Gill 244 (408)
T COG3420 222 MY------------SDRLKVSDNRSSGNRDHGILL 244 (408)
T ss_pred EE------------eccEEEEcCcccCccccceee
Confidence 32 677777777777666666644
No 76
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=95.25 E-value=3.4 Score=40.71 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHhhhcccCCCcEEEeCCCcceeeeEEec---cceeEEEc
Q 011615 71 SNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLT---SHFTLYIH 117 (481)
Q Consensus 71 Ddt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl~~~i~l~---s~~~l~l~ 117 (481)
++-.-||+|+++|....+...-.+.+-+|.|. +.+.++ .+++|+.+
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~-e~v~Vp~~~~~ITLyGe 140 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQ-ETVYVPAAPGGITLYGE 140 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceec-eeEEecCCCCceeEEec
Confidence 56677999999987521112346777899994 223332 23566543
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=94.67 E-value=0.85 Score=42.66 Aligned_cols=130 Identities=14% Similarity=0.183 Sum_probs=67.6
Q ss_pred ccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEec-CCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCCceE
Q 011615 225 SNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVS-GDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDSAAI 303 (481)
Q Consensus 225 ~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~-gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~~gi 303 (481)
+..+++|+.|-. +..||||... +-+|+|..+.. ++|++.++.. ...++|.+.-.....+--|
T Consensus 61 ~GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~-----------~~~~~I~ggga~~A~DKV~ 123 (215)
T PF03211_consen 61 DGATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGD-----------GGTVTIIGGGARNASDKVF 123 (215)
T ss_dssp TTEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESS-----------EEEEEEESTEEEEEEEEEE
T ss_pred CCCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCC-----------CceEEEeCCcccCCCccEE
Confidence 356677776643 4578998875 77888888876 8899999884 2255554433332111111
Q ss_pred EeccCcCCCEEEEEEEeeEEEcCCceEEEEeecC---CCceeecEEEEeeEEccceeeEEEEcccCCCCCCCCCCCCCCe
Q 011615 304 ALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVG---RGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPT 380 (481)
Q Consensus 304 sIGs~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g---~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~ 380 (481)
..- +--.++|+|-+.. +.|--+.|--+ .++.-|+|.+++........-+-|..+|.+. ..
T Consensus 124 Q~N-----g~Gtv~I~nF~a~--d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~----------at 186 (215)
T PF03211_consen 124 QHN-----GGGTVTIKNFYAE--DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDT----------AT 186 (215)
T ss_dssp EE------SSEEEEEEEEEEE--EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTT----------EE
T ss_pred Eec-----CceeEEEEeEEEc--CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCe----------EE
Confidence 111 1124666664333 23433333211 1134466777776655444445677777632 35
Q ss_pred EEeEEEEE
Q 011615 381 VTGINYRD 388 (481)
Q Consensus 381 i~nItf~n 388 (481)
|++++++.
T Consensus 187 i~~~~~~~ 194 (215)
T PF03211_consen 187 ISNSCIKG 194 (215)
T ss_dssp EEEEEEEE
T ss_pred EEEEEecC
Confidence 66555554
No 78
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=93.33 E-value=6.4 Score=40.23 Aligned_cols=65 Identities=28% Similarity=0.390 Sum_probs=33.9
Q ss_pred eeeEEEEEEEEeCCCCceEEeccCcC--------C-----------CEEEEEEEeeEEEcCCceEEEEeecCCCceeecE
Q 011615 285 TQHLIIRRLICISPDSAAIALGSEMS--------G-----------GIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEI 345 (481)
Q Consensus 285 s~nI~I~n~~~~~~~~~gisIGs~~~--------~-----------~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI 345 (481)
+.|..++|........+|+-+|+.+. + --.|=.|+|+...++ .|+.+. |+|.+++|+||
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~-~DG~~~yvsni 340 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIG-MDGKGGYVSNI 340 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCE-EECCS-EEEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeee-ecCCCceEeeE
Confidence 56788888887777778888877521 0 023445556555555 333332 25667788887
Q ss_pred EEEeeE
Q 011615 346 YVRRMT 351 (481)
Q Consensus 346 ~f~ni~ 351 (481)
+.+++.
T Consensus 341 ~~~d~~ 346 (549)
T PF09251_consen 341 TVQDCA 346 (549)
T ss_dssp EEES-S
T ss_pred Eeeccc
Confidence 777654
No 79
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=91.26 E-value=0.88 Score=43.92 Aligned_cols=64 Identities=22% Similarity=0.350 Sum_probs=37.2
Q ss_pred eeeEEEEEEEEeCCCCceEEeccCc-C----CCEEEEEEEeeEEEcC-----CceEEEEeecCCCceeecEEEEeeEEcc
Q 011615 285 TQHLIIRRLICISPDSAAIALGSEM-S----GGIKDVRAEDITAINT-----QSGVRIKTAVGRGAYVKEIYVRRMTMKT 354 (481)
Q Consensus 285 s~nI~I~n~~~~~~~~~gisIGs~~-~----~~v~nI~v~n~~~~~~-----~~Gi~Ikt~~g~~g~v~nI~f~ni~~~~ 354 (481)
|.|..|.|+...+ ..|+-||-.- . .--+|....|+.+.++ -.||.|.+ |...+=|-+.|+.|..
T Consensus 300 cdnfvidni~mvn--sagmligygvikg~ylsipqnfkln~i~ldn~~l~yklrgiqiss----gnatsfvaitn~~mkr 373 (464)
T PRK10123 300 CDNFVIDNIEMIN--SAGMLIGYGVIKGKYLSIPQNFKLNNIQLDNTHLAYKLRGIQISA----GNAVSFVALTNIEMKR 373 (464)
T ss_pred ccceEEecccccc--ccccEEEeeeeeccEecccccceeceEeecccccceeeeeeEecc----CCcceEEEEeeeehhh
Confidence 7788888887776 4566666431 1 1134555555555444 35676654 3344556677777665
No 80
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=90.55 E-value=0.25 Score=33.78 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=12.1
Q ss_pred cCCCCCccEEEEecEEecCCceeeec
Q 011615 246 INPDSCTNTRIEDNYIVSGDDCVAVK 271 (481)
Q Consensus 246 I~~~~s~nV~I~n~~i~~gDD~iai~ 271 (481)
|.++.+.+.+|+++.+....|+|.+.
T Consensus 2 I~l~~s~~~~i~~N~i~~~~~GI~~~ 27 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNNSYGIYLT 27 (44)
T ss_pred EEEEecCCCEEECcEEeCCCCEEEEE
Confidence 44444444445555554444444443
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=90.25 E-value=0.33 Score=33.14 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=29.7
Q ss_pred EEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEec
Q 011615 219 VHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVS 263 (481)
Q Consensus 219 i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~ 263 (481)
|.+..+.+.+|++.++.. +.|||++..+++-+|+++++..
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 566677777788888875 5678888888888887777754
No 82
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=90.15 E-value=11 Score=35.45 Aligned_cols=129 Identities=14% Similarity=0.107 Sum_probs=85.0
Q ss_pred eccEEEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCc-cEEEEecEEecCCceeeecCCCCccCc
Q 011615 201 SDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCT-NTRIEDNYIVSGDDCVAVKSGWDEYGI 279 (481)
Q Consensus 201 ~~nv~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~-nV~I~n~~i~~gDD~iai~sg~~~~g~ 279 (481)
-+..+|+|+.|-.+...+||... +.+|+|+.... --.|.+.+.... .++|.+.-....+|=|--..+
T Consensus 60 e~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwed----VcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng------ 127 (215)
T PF03211_consen 60 EDGATLKNVIIGANQADGIHCKG--SCTLENVWWED----VCEDAATFKGDGGTVTIIGGGARNASDKVFQHNG------ 127 (215)
T ss_dssp ETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S------
T ss_pred cCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecc----cceeeeEEcCCCceEEEeCCcccCCCccEEEecC------
Confidence 35789999999777788999887 88899998886 456888887766 889999988887776644443
Q ss_pred ccCCceeeEEEEEEEEeCCCCceEEe---ccCcC--CCEEEEEEEeeEEEcCCceEEEEeecCCCceeecEEEEe
Q 011615 280 KVGMPTQHLIIRRLICISPDSAAIAL---GSEMS--GGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRR 349 (481)
Q Consensus 280 ~~~~~s~nI~I~n~~~~~~~~~gisI---Gs~~~--~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~f~n 349 (481)
.-.+.|+|.+... .|--+ |.-.. +.-++|.+++........-+.|-...++...|+++.+..
T Consensus 128 -----~Gtv~I~nF~a~d---~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 128 -----GGTVTIKNFYAED---FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIKG 194 (215)
T ss_dssp -----SEEEEEEEEEEEE---EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEEE
T ss_pred -----ceeEEEEeEEEcC---CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEecC
Confidence 3568888866663 34322 22222 234667777765544333355666667677777777665
No 83
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=89.38 E-value=5.4 Score=38.34 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=23.8
Q ss_pred EEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEec
Q 011615 219 VHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVS 263 (481)
Q Consensus 219 i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~ 263 (481)
+.+....+.+|++++|.++.. ...-|+.+.++ +.+|+||+|..
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~ 133 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTN 133 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEEC
Confidence 344456778899999998621 12234444433 45555555443
No 84
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=88.73 E-value=9.8 Score=38.83 Aligned_cols=109 Identities=15% Similarity=0.067 Sum_probs=63.8
Q ss_pred EEeeccEEEEeeEEeeCC-CCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecCCCCc
Q 011615 198 VMFSDNVQISNLTLIDSP-SWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDE 276 (481)
Q Consensus 198 ~~~~~nv~I~g~~i~ns~-~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~ 276 (481)
+.+-.+|++.|+.+...+ .-++.+....++.+.+|.+.+. + |.-++.-....|++|+|..---||.-
T Consensus 117 V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf----~--g~cl~~~~~~~VrGC~F~~C~~gi~~------ 184 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF----H--GTCLESWAGGEVRGCTFYGCWKGIVS------ 184 (386)
T ss_pred EeeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecC----c--ceeEEEcCCcEEeeeEEEEEEEEeec------
Confidence 444567777888877766 5566677777788888887762 2 23333346677777777653333321
Q ss_pred cCcccCCceeeEEEEEEEEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCCceEEE
Q 011615 277 YGIKVGMPTQHLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRI 332 (481)
Q Consensus 277 ~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~Gi~I 332 (481)
.+...+.|++|+|+.. -+.|-+++ +.++++|.+.++.--+.+
T Consensus 185 ------~~~~~lsVk~C~FekC---~igi~s~G-----~~~i~hn~~~ec~Cf~l~ 226 (386)
T PF01696_consen 185 ------RGKSKLSVKKCVFEKC---VIGIVSEG-----PARIRHNCASECGCFVLM 226 (386)
T ss_pred ------CCcceEEeeheeeehe---EEEEEecC-----CeEEecceecccceEEEE
Confidence 2256777788887753 23333333 344556666655434443
No 85
>PLN02773 pectinesterase
Probab=86.45 E-value=14 Score=36.94 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=73.4
Q ss_pred EeeccccEEEEeEEEECCCCC--CCCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeC
Q 011615 220 HPVYSSNVLIQGLTIRAPIDS--PNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICIS 297 (481)
Q Consensus 220 ~~~~~~nv~i~~~~i~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~ 297 (481)
.....+++.++|++|.|.... ..+..+.+ .+..+.+.+|.|....|-+-.+.+ .-.++||++.+
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v-~gDr~~f~~c~~~G~QDTL~~~~g-------------r~yf~~c~IeG 162 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRV-TADRCAFYNCRFLGWQDTLYLHYG-------------KQYLRDCYIEG 162 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEe-cCccEEEEccEeecccceeEeCCC-------------CEEEEeeEEee
Confidence 344678999999999996421 12223333 368899999999998888776543 46789999997
Q ss_pred CCCceEEeccCcCCCEEEEEEEeeEEEcCCceEEEEeecCCC--ceeecEEEEeeEEccc
Q 011615 298 PDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRG--AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 298 ~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~--g~v~nI~f~ni~~~~~ 355 (481)
+ -=+=+|. -...|++|++.....| .| |.+++. ..-....|.|+++...
T Consensus 163 ~--VDFIFG~------g~a~Fe~c~i~s~~~g-~I-TA~~r~~~~~~~GfvF~~c~it~~ 212 (317)
T PLN02773 163 S--VDFIFGN------STALLEHCHIHCKSAG-FI-TAQSRKSSQESTGYVFLRCVITGN 212 (317)
T ss_pred c--ccEEeec------cEEEEEeeEEEEccCc-EE-ECCCCCCCCCCceEEEEccEEecC
Confidence 4 2333443 2578999999865554 23 222211 1223578999998764
No 86
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=84.15 E-value=27 Score=37.29 Aligned_cols=137 Identities=9% Similarity=0.078 Sum_probs=67.7
Q ss_pred EEeeccEEEEeeEEeeCCCC----eEE-eeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEecCCceeeecC
Q 011615 198 VMFSDNVQISNLTLIDSPSW----NVH-PVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKS 272 (481)
Q Consensus 198 ~~~~~nv~I~g~~i~ns~~~----~i~-~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~s 272 (481)
....+++..+||+|+|.... .+- ....+...+.+|+|.... |-+.... ..-..++|.|...=|-| +
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~Q-----DTLy~~~-~rqyy~~C~I~G~vDFI-F-- 336 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQ-----DTLYAAA-LRQFYRECDIYGTIDFI-F-- 336 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccc-----chheeCC-CcEEEEeeEEEeccceE-e--
Confidence 34567888888888887542 121 224667777777777532 3333322 33466777776543332 1
Q ss_pred CCCccCcccCCceeeEEEEEEEEeCCCC-----ceEEe-ccCcCCCEEEEEEEeeEEEcCCceEE----EEeecCCC-ce
Q 011615 273 GWDEYGIKVGMPTQHLIIRRLICISPDS-----AAIAL-GSEMSGGIKDVRAEDITAINTQSGVR----IKTAVGRG-AY 341 (481)
Q Consensus 273 g~~~~g~~~~~~s~nI~I~n~~~~~~~~-----~gisI-Gs~~~~~v~nI~v~n~~~~~~~~Gi~----Ikt~~g~~-g~ 341 (481)
| .-...++||++..-.. ..|.- |......-..+.|.||++.+...... .+++-|+. ..
T Consensus 337 G-----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ 405 (497)
T PLN02698 337 G-----------NAAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKK 405 (497)
T ss_pred c-----------ccceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCCCC
Confidence 1 2345666666653110 11222 11122233567777777766432111 12222322 23
Q ss_pred eecEEEEeeEEcc
Q 011615 342 VKEIYVRRMTMKT 354 (481)
Q Consensus 342 v~nI~f~ni~~~~ 354 (481)
...+.|.+..|.+
T Consensus 406 ysr~vf~~s~l~~ 418 (497)
T PLN02698 406 YSRAIVMESYIDD 418 (497)
T ss_pred CceEEEEecccCC
Confidence 3456666666655
No 87
>PLN02480 Probable pectinesterase
Probab=83.15 E-value=56 Score=33.12 Aligned_cols=112 Identities=10% Similarity=0.053 Sum_probs=69.6
Q ss_pred eeccccEEEEeEEEECCCCC-----CCCCCcCC-CCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEE
Q 011615 221 PVYSSNVLIQGLTIRAPIDS-----PNTDGINP-DSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLI 294 (481)
Q Consensus 221 ~~~~~nv~i~~~~i~~~~~~-----~n~DGI~~-~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~ 294 (481)
....++++++|++|.+.... ...-++-+ ..++++.++||.|....|-+-... ..-.++||+
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~-------------gR~yf~~C~ 194 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK-------------GRHYYHSCY 194 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC-------------CCEEEEeCE
Confidence 44568999999999996310 11223333 247889999999998777765443 245788899
Q ss_pred EeCCCCceEEeccCcCCCEEEEEEEeeEEEcCC------ceEEEEeecCC-CceeecEEEEeeEEccc
Q 011615 295 CISPDSAAIALGSEMSGGIKDVRAEDITAINTQ------SGVRIKTAVGR-GAYVKEIYVRRMTMKTM 355 (481)
Q Consensus 295 ~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~------~Gi~Ikt~~g~-~g~v~nI~f~ni~~~~~ 355 (481)
+.+. --+=+|. -...|+||++.... .|. | |.+++ ...-....|.|+++...
T Consensus 195 IeG~--VDFIFG~------g~a~fe~C~i~s~~~~~~~~~G~-I-TA~~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 195 IQGS--IDFIFGR------GRSIFHNCEIFVIADRRVKIYGS-I-TAHNRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred EEee--eeEEccc------eeEEEEccEEEEecCCCCCCceE-E-EcCCCCCCCCCEEEEECCEEccc
Confidence 9873 1233332 26678999998542 121 3 22221 12234578889888764
No 88
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=80.17 E-value=30 Score=31.53 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=7.3
Q ss_pred CEEEEEEEeeEEEcC
Q 011615 312 GIKDVRAEDITAINT 326 (481)
Q Consensus 312 ~v~nI~v~n~~~~~~ 326 (481)
++.|..|||+.|.+.
T Consensus 62 GF~ntlIENNVfDG~ 76 (198)
T PF08480_consen 62 GFYNTLIENNVFDGV 76 (198)
T ss_pred cccccEEEeeeeccc
Confidence 344455555555444
No 89
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=78.20 E-value=37 Score=30.94 Aligned_cols=96 Identities=21% Similarity=0.181 Sum_probs=56.1
Q ss_pred ccEEEEeeEEeeCCCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEecEEec-CC-------ceeeecCC
Q 011615 202 DNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVS-GD-------DCVAVKSG 273 (481)
Q Consensus 202 ~nv~I~g~~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~-gD-------D~iai~sg 273 (481)
++|+|.+=+|.+...++|.+.... .+-.-...++|.|++..|.. |- .+|. .+|
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~------------------~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv-~sG 62 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYD------------------GSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIV-TSG 62 (198)
T ss_pred CceEEecceeecccCceEEEEecC------------------CCCCccccccEEEECcEeecCCcCCCCceeeeEE-ecc
Confidence 467777777777777776654331 00111234577777777743 21 1222 122
Q ss_pred CCccCcccCCceeeEEEEEEEEeCCCCceEEecc-----CcCCCEEEEEEEeeEEEcCC
Q 011615 274 WDEYGIKVGMPTQHLIIRRLICISPDSAAIALGS-----EMSGGIKDVRAEDITAINTQ 327 (481)
Q Consensus 274 ~~~~g~~~~~~s~nI~I~n~~~~~~~~~gisIGs-----~~~~~v~nI~v~n~~~~~~~ 327 (481)
..|.+|+|+.|.+..+.++.--- ...+.-.-.+|||+.+.++.
T Consensus 63 -----------F~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 63 -----------FYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred -----------ccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 67889999999986555555321 11233445788999888875
No 90
>PLN02665 pectinesterase family protein
Probab=78.15 E-value=42 Score=34.32 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=72.4
Q ss_pred eeccccEEEEeEEEECCCCC-------CCCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEE
Q 011615 221 PVYSSNVLIQGLTIRAPIDS-------PNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRL 293 (481)
Q Consensus 221 ~~~~~nv~i~~~~i~~~~~~-------~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~ 293 (481)
...++++..+|++|.|.... ..+-.+.+ ..+.+.+.||.|....|-+....+ .-.++||
T Consensus 150 ~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v-~gDka~f~~C~f~G~QDTL~~~~g-------------r~yf~~C 215 (366)
T PLN02665 150 IVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRI-SGDKAAFYNCRFIGFQDTLCDDKG-------------RHFFKDC 215 (366)
T ss_pred EEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEE-cCCcEEEEcceeccccceeEeCCC-------------CEEEEee
Confidence 45678999999999996421 11222333 368899999999988787765443 4578999
Q ss_pred EEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCCce-EEEEeecCCC--ceeecEEEEeeEEccce
Q 011615 294 ICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSG-VRIKTAVGRG--AYVKEIYVRRMTMKTMK 356 (481)
Q Consensus 294 ~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~G-i~Ikt~~g~~--g~v~nI~f~ni~~~~~~ 356 (481)
++.++- -+=+|. -...+++|++.-...+ ...-|.+++. ..-....|.|++++...
T Consensus 216 yIeG~V--DFIFG~------g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 216 YIEGTV--DFIFGS------GKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred EEeecc--ceeccc------cceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCC
Confidence 999742 233343 2457899998865443 2222333221 12345779999988754
No 91
>PLN02682 pectinesterase family protein
Probab=77.51 E-value=74 Score=32.57 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=15.3
Q ss_pred eEEEEeeccEEEEeeEEeeCC
Q 011615 195 LIEVMFSDNVQISNLTLIDSP 215 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~ 215 (481)
+-.....+++..+||+|+|+.
T Consensus 156 AT~~v~a~~F~a~nlTf~Nt~ 176 (369)
T PLN02682 156 ATFAVNSPYFIAKNITFKNTA 176 (369)
T ss_pred eEEEEECCCeEEEeeEEEccc
Confidence 444556778888888888864
No 92
>PLN02634 probable pectinesterase
Probab=72.19 E-value=96 Score=31.62 Aligned_cols=18 Identities=6% Similarity=0.366 Sum_probs=13.4
Q ss_pred EEeeccEEEEeeEEeeCC
Q 011615 198 VMFSDNVQISNLTLIDSP 215 (481)
Q Consensus 198 ~~~~~nv~I~g~~i~ns~ 215 (481)
....+++..+||+|+|+.
T Consensus 145 ~V~a~~F~a~niTf~Nta 162 (359)
T PLN02634 145 TVYANYFTARNISFKNTA 162 (359)
T ss_pred EEECCCeEEEeCeEEeCC
Confidence 345678888888888873
No 93
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=70.05 E-value=69 Score=34.73 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=72.2
Q ss_pred eccccEEEEeEEEECCCCCC--CCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCC
Q 011615 222 VYSSNVLIQGLTIRAPIDSP--NTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPD 299 (481)
Q Consensus 222 ~~~~nv~i~~~~i~~~~~~~--n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 299 (481)
...+++..+|++|.|..... .+-.+.+ .++.+.+.||.|....|-+...++ .-.+++|++.++-
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv-~~D~~~f~~c~~~G~QDTLy~~~~-------------rq~y~~C~I~GtV 392 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRS-DSDLSVIENCEFLGNQDTLYAHSL-------------RQFYKSCRIQGNV 392 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEe-cCCcEEEEeeeeeeccccceeCCC-------------ceEEEeeEEeecC
Confidence 45679999999999965322 2223333 478899999999998887776553 3478999999742
Q ss_pred CceEEeccCcCCCEEEEEEEeeEEEcC------Cce--EEEEeecCC--CceeecEEEEeeEEccc
Q 011615 300 SAAIALGSEMSGGIKDVRAEDITAINT------QSG--VRIKTAVGR--GAYVKEIYVRRMTMKTM 355 (481)
Q Consensus 300 ~~gisIGs~~~~~v~nI~v~n~~~~~~------~~G--i~Ikt~~g~--~g~v~nI~f~ni~~~~~ 355 (481)
-+=+|. -...|+||.+.-. ..| -.| |.+++ ...-..+.|.|+++...
T Consensus 393 --DFIFG~------a~avfq~c~i~~~~~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 393 --DFIFGN------SAAVFQDCAILIAPRQLKPEKGENNAV-TAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred --CEEecC------ceEEEEccEEEEeccccCCCCCCceEE-EeCCCCCCCCCceEEEEccEEecC
Confidence 333443 2678899999732 111 123 33332 12335688999998764
No 94
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=66.36 E-value=86 Score=31.12 Aligned_cols=110 Identities=11% Similarity=0.104 Sum_probs=60.2
Q ss_pred eccccEEEEeEEEECCCCC--CCCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCC
Q 011615 222 VYSSNVLIQGLTIRAPIDS--PNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPD 299 (481)
Q Consensus 222 ~~~~nv~i~~~~i~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 299 (481)
...+++.++|++|.+.... ..+-++.+ .++++.+.+|.|....|-+-... ....++||++.+.
T Consensus 84 v~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~-------------~r~y~~~c~IeG~- 148 (298)
T PF01095_consen 84 VNADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANG-------------GRQYFKNCYIEGN- 148 (298)
T ss_dssp E-STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-EEE-S-------------SEEEEES-EEEES-
T ss_pred ccccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccceeeecc-------------ceeEEEeeEEEec-
Confidence 3568999999999985421 22334444 35789999999999878776654 3568889999973
Q ss_pred CceEEeccCcCCCEEEEEEEeeEEEcCC----ceEEEEeecCC--CceeecEEEEeeEEcc
Q 011615 300 SAAIALGSEMSGGIKDVRAEDITAINTQ----SGVRIKTAVGR--GAYVKEIYVRRMTMKT 354 (481)
Q Consensus 300 ~~gisIGs~~~~~v~nI~v~n~~~~~~~----~Gi~Ikt~~g~--~g~v~nI~f~ni~~~~ 354 (481)
-=+=.|.. ...|+||++.-.. .+..|-. +++ ...-....|.|+++..
T Consensus 149 -vDFIfG~~------~a~f~~c~i~~~~~~~~~~~~ItA-~~r~~~~~~~G~vF~~c~i~~ 201 (298)
T PF01095_consen 149 -VDFIFGNG------TAVFENCTIHSRRPGGGQGGYITA-QGRTSPSQKSGFVFDNCTITG 201 (298)
T ss_dssp -EEEEEESS------EEEEES-EEEE--SSTSSTEEEEE-E---CTTSS-EEEEES-EEEE
T ss_pred -CcEEECCe------eEEeeeeEEEEeccccccceeEEe-CCccccCCCeEEEEEEeEEec
Confidence 33444532 4568899887532 1223322 221 1234467888888875
No 95
>PLN02432 putative pectinesterase
Probab=66.30 E-value=1e+02 Score=30.45 Aligned_cols=18 Identities=11% Similarity=0.086 Sum_probs=13.2
Q ss_pred EEeeccEEEEeeEEeeCC
Q 011615 198 VMFSDNVQISNLTLIDSP 215 (481)
Q Consensus 198 ~~~~~nv~I~g~~i~ns~ 215 (481)
....+++.++||+|+|..
T Consensus 90 ~v~a~~f~a~nlt~~Nt~ 107 (293)
T PLN02432 90 SVLASDFVGRFLTIQNTF 107 (293)
T ss_pred EEECCCeEEEeeEEEeCC
Confidence 445678888888888863
No 96
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=65.06 E-value=1.8e+02 Score=30.30 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=26.4
Q ss_pred HHHHHHHhhhcccCCCcEEEeCCCcceeeeEEeccceeEE
Q 011615 76 FNTAISNLSKYAADGGAQLIVPPGKWLTGSFNLTSHFTLY 115 (481)
Q Consensus 76 iq~Ai~~a~~~~~~~g~~v~iP~G~Yl~~~i~l~s~~~l~ 115 (481)
|.+|+....+. .-...+++-+|+|-...|.+.|.+.+.
T Consensus 35 iEea~~~l~e~--~~e~LIFlH~G~~e~~~i~I~sdvqii 72 (625)
T KOG1777|consen 35 IEEALRFLDEN--DEEKLIFLHEGTHETETIRITSDVQII 72 (625)
T ss_pred HHHHhhhcccc--cccceEEEEeccccceEEEEcCCeeEe
Confidence 44555444331 236788889999988888888888774
No 97
>PLN02671 pectinesterase
Probab=64.92 E-value=89 Score=31.88 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=14.8
Q ss_pred eEEEEeeccEEEEeeEEeeC
Q 011615 195 LIEVMFSDNVQISNLTLIDS 214 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns 214 (481)
+-.....+++..+||+|+|.
T Consensus 147 aTv~v~a~~F~a~nitfeNt 166 (359)
T PLN02671 147 ASVTIESDYFCATGITFENT 166 (359)
T ss_pred EEEEEECCceEEEeeEEEcC
Confidence 44455678888888888887
No 98
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=62.73 E-value=97 Score=33.47 Aligned_cols=112 Identities=12% Similarity=0.084 Sum_probs=71.1
Q ss_pred EeeccccEEEEeEEEECCCCCC--CCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeC
Q 011615 220 HPVYSSNVLIQGLTIRAPIDSP--NTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICIS 297 (481)
Q Consensus 220 ~~~~~~nv~i~~~~i~~~~~~~--n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~ 297 (481)
.....+++..+|++|.|..... .+-.+.+ .+.++.+.+|.|....|-+...++ .-.++||++.+
T Consensus 314 ~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v-~~D~~~fy~C~~~G~QDTLy~~~~-------------rqyy~~C~I~G 379 (537)
T PLN02506 314 VAVSGRGFIARDITFRNTAGPQNHQAVALRV-DSDQSAFYRCSMEGYQDTLYAHSL-------------RQFYRECEIYG 379 (537)
T ss_pred EEEEcCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEcceeecccccceecCC-------------ceEEEeeEEec
Confidence 3456789999999999864322 2223333 478899999999998887766553 34789999997
Q ss_pred CCCceEEeccCcCCCEEEEEEEeeEEEcCCc----eEEEEeecCCC--ceeecEEEEeeEEcc
Q 011615 298 PDSAAIALGSEMSGGIKDVRAEDITAINTQS----GVRIKTAVGRG--AYVKEIYVRRMTMKT 354 (481)
Q Consensus 298 ~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~----Gi~Ikt~~g~~--g~v~nI~f~ni~~~~ 354 (481)
+- -+=+|. -...|+||++.-... .-.| |.+++. ..-..+.|.|+++..
T Consensus 380 tV--DFIFG~------a~avfq~C~i~~r~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~ 433 (537)
T PLN02506 380 TI--DFIFGN------GAAVLQNCKIYTRVPLPLQKVTI-TAQGRKSPHQSTGFSIQDSYVLA 433 (537)
T ss_pred cc--ceEccC------ceeEEeccEEEEccCCCCCCceE-EccCCCCCCCCcEEEEEcCEEcc
Confidence 42 233443 257788998874321 1122 333321 223467788888875
No 99
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=62.56 E-value=1.1e+02 Score=32.76 Aligned_cols=113 Identities=7% Similarity=0.058 Sum_probs=71.4
Q ss_pred eeccccEEEEeEEEECCCCCC--CCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCC
Q 011615 221 PVYSSNVLIQGLTIRAPIDSP--NTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISP 298 (481)
Q Consensus 221 ~~~~~nv~i~~~~i~~~~~~~--n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~ 298 (481)
....+++..+|++|.|..... .+-.+.+ .+.++.+.+|.|....|-+....+ .-.+++|++.++
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v-~~D~~~fy~c~~~G~QDTLy~~~~-------------rqyy~~C~I~G~ 331 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSI-TSDHSVLYRCSIAGYQDTLYAAAL-------------RQFYRECDIYGT 331 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEcceeecccchheeCCC-------------cEEEEeeEEEec
Confidence 346789999999999864321 2223333 378899999999988887776553 347889999974
Q ss_pred CCceEEeccCcCCCEEEEEEEeeEEEcCCc--e-EEEEeecCC--CceeecEEEEeeEEccc
Q 011615 299 DSAAIALGSEMSGGIKDVRAEDITAINTQS--G-VRIKTAVGR--GAYVKEIYVRRMTMKTM 355 (481)
Q Consensus 299 ~~~gisIGs~~~~~v~nI~v~n~~~~~~~~--G-i~Ikt~~g~--~g~v~nI~f~ni~~~~~ 355 (481)
- -+=+|. ....|+||++..... | -..-|.+++ ...-..+.|.|+++...
T Consensus 332 v--DFIFG~------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 385 (497)
T PLN02698 332 I--DFIFGN------AAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTS 385 (497)
T ss_pred c--ceEecc------cceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 2 233443 246789999874321 1 111233332 12335688999998764
No 100
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=62.48 E-value=25 Score=36.46 Aligned_cols=146 Identities=18% Similarity=0.169 Sum_probs=64.7
Q ss_pred EEEEeEEEECCC--CCCCCCCcCCCC------CccEEEEecEEecCC---ceeeecCCCCccCcccCCceeeEEEEEEEE
Q 011615 227 VLIQGLTIRAPI--DSPNTDGINPDS------CTNTRIEDNYIVSGD---DCVAVKSGWDEYGIKVGMPTQHLIIRRLIC 295 (481)
Q Consensus 227 v~i~~~~i~~~~--~~~n~DGI~~~~------s~nV~I~n~~i~~gD---D~iai~sg~~~~g~~~~~~s~nI~I~n~~~ 295 (481)
-+|++..+...+ .+.....|.+.. ..+.+|+++.|...| .-|++|+ .+-+|++++|
T Consensus 166 h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvKS-------------~~N~ir~Ntf 232 (425)
T PF14592_consen 166 HRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVKS-------------SDNTIRNNTF 232 (425)
T ss_dssp -EEES-EEE-E---SSS---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEES-------------BT-EEES-EE
T ss_pred ceEEeccccccCCCCCCCceeEEEecccccccccceeeecchhhhcCCceeEEEeec-------------CCceEeccEE
Confidence 356666665321 123344555532 468899999987633 4577776 3456777777
Q ss_pred eCCCCceEEeccCcCCCEEEEEEEeeEEEcC-----CceEEEEeecCCCceeecEEEEeeEEccceeeEEE-EcccCCCC
Q 011615 296 ISPDSAAIALGSEMSGGIKDVRAEDITAINT-----QSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFWM-TGDYGSHP 369 (481)
Q Consensus 296 ~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~-----~~Gi~Ikt~~g~~g~v~nI~f~ni~~~~~~~~i~i-~~~y~~~~ 369 (481)
..+ ..++++-... +-+|+++.|.+. ..||||- +.+=.|.|=+|++++-...+.++.+ ......
T Consensus 233 ~es-~G~ltlRHGn-----~n~V~gN~FiGng~~~~tGGIRIi---~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s-- 301 (425)
T PF14592_consen 233 RES-QGSLTLRHGN-----RNTVEGNVFIGNGVKEGTGGIRII---GEGHTIYNNYFEGLTGTRFRGALAVMNGVPNS-- 301 (425)
T ss_dssp ES--SSEEEEEE-S-----S-EEES-EEEE-SSSS-B--EEE----SBS-EEES-EEEESSB-TTTTSEE-EEE--BS--
T ss_pred Eec-cceEEEecCC-----CceEeccEEecCCCcCCCCceEEe---cCCcEEEcceeeccccceeecceeeccCCCCC--
Confidence 775 3456553322 345677777753 2488873 2234577888888776555555553 333211
Q ss_pred CCCCCCCCCCeEEeEEEEEEEEEccCeeEEE
Q 011615 370 DPGFDPKALPTVTGINYRDMVADNVTQSAKL 400 (481)
Q Consensus 370 ~~~~~~~~~~~i~nItf~nI~~~~~~~~~~l 400 (481)
...+.-.++|+.+.+=+.-+...++.+
T Consensus 302 ----~ln~y~qv~nv~I~~NT~In~~~~i~~ 328 (425)
T PF14592_consen 302 ----PLNRYDQVKNVLIANNTFINCKSPIHF 328 (425)
T ss_dssp ----TTSTT---BSEEEES-EEES-SEEEES
T ss_pred ----CcccccccceeEEecceEEccCCceEE
Confidence 122334566666665555555545544
No 101
>PLN02916 pectinesterase family protein
Probab=61.80 E-value=1.5e+02 Score=31.78 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=71.9
Q ss_pred eeccccEEEEeEEEECCCCCCCCC--CcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCC
Q 011615 221 PVYSSNVLIQGLTIRAPIDSPNTD--GINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISP 298 (481)
Q Consensus 221 ~~~~~nv~i~~~~i~~~~~~~n~D--GI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~ 298 (481)
....+++..+|++|.|........ .+.+ .++...+.+|.|....|-+...++ .-.+++|++.++
T Consensus 273 ~v~~~~F~A~nitf~Ntag~~~~QAVALrv-~~D~a~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~Gt 338 (502)
T PLN02916 273 GVSGDGFWARDITFENTAGPHKHQAVALRV-SSDLSVFYRCSFKGYQDTLFVHSL-------------RQFYRDCHIYGT 338 (502)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCceEEEEE-cCCcEEEEeeeEeccCceeEeCCC-------------CEEEEecEEecc
Confidence 345678999999999865322222 2333 468899999999998888776653 347899999974
Q ss_pred CCceEEeccCcCCCEEEEEEEeeEEEcCCc----eEEEEeecCC--CceeecEEEEeeEEccc
Q 011615 299 DSAAIALGSEMSGGIKDVRAEDITAINTQS----GVRIKTAVGR--GAYVKEIYVRRMTMKTM 355 (481)
Q Consensus 299 ~~~gisIGs~~~~~v~nI~v~n~~~~~~~~----Gi~Ikt~~g~--~g~v~nI~f~ni~~~~~ 355 (481)
- -+=+|. -...++||.+.-... .-.| |.+++ ...-..+.|.|+++...
T Consensus 339 V--DFIFG~------a~avFq~C~I~~~~~~~~~~g~I-TAq~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 339 I--DFIFGD------AAVVFQNCDIFVRRPMDHQGNMI-TAQGRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred c--ceeccC------ceEEEecCEEEEecCCCCCcceE-EecCCCCCCCCcEEEEEeeEEecC
Confidence 2 233442 357789998865321 1223 33332 12335788999998764
No 102
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=61.77 E-value=1.4e+02 Score=32.14 Aligned_cols=114 Identities=10% Similarity=0.084 Sum_probs=73.0
Q ss_pred EeeccccEEEEeEEEECCCCCC--CCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeC
Q 011615 220 HPVYSSNVLIQGLTIRAPIDSP--NTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICIS 297 (481)
Q Consensus 220 ~~~~~~nv~i~~~~i~~~~~~~--n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~ 297 (481)
.....+++..+|++|.|..... .+-.+.+ .++.+.+.+|.|....|-+...++ .-.+++|++.+
T Consensus 308 v~v~~~~F~a~nitf~Ntag~~~~QAVALrv-~gDr~~fy~C~f~GyQDTLy~~~~-------------Rqyy~~C~I~G 373 (529)
T PLN02170 308 VAAMGDGFIARDITFVNSAGPNSEQAVALRV-GSDKSVVYRCSVEGYQDSLYTHSK-------------RQFYRETDITG 373 (529)
T ss_pred EEEEcCCeEEEeeEEEecCCCCCCceEEEEe-cCCcEEEEeeeEeccCCcceeCCC-------------CEEEEeeEEcc
Confidence 3456788999999999864322 2233333 368899999999998887766553 34779999997
Q ss_pred CCCceEEeccCcCCCEEEEEEEeeEEEcCCc---eEEEEeecCCC--ceeecEEEEeeEEccce
Q 011615 298 PDSAAIALGSEMSGGIKDVRAEDITAINTQS---GVRIKTAVGRG--AYVKEIYVRRMTMKTMK 356 (481)
Q Consensus 298 ~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~---Gi~Ikt~~g~~--g~v~nI~f~ni~~~~~~ 356 (481)
+- -+=+|. -...++||.+.-... .-.| |.+++. ..-..+.|.|+++....
T Consensus 374 tV--DFIFG~------a~avFq~C~I~~~~~~~~~g~I-TAq~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 374 TV--DFIFGN------SAVVFQSCNIAARKPSGDRNYV-TAQGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred cc--ceeccc------ceEEEeccEEEEecCCCCceEE-EecCCCCCCCCceEEEEeeEEecCC
Confidence 42 233332 257789999875421 1223 333321 23356889999987743
No 103
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=59.72 E-value=1.1e+02 Score=34.08 Aligned_cols=112 Identities=10% Similarity=0.075 Sum_probs=71.5
Q ss_pred eccccEEEEeEEEECCCCCCCCCCcCCC-CCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCC
Q 011615 222 VYSSNVLIQGLTIRAPIDSPNTDGINPD-SCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDS 300 (481)
Q Consensus 222 ~~~~nv~i~~~~i~~~~~~~n~DGI~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~ 300 (481)
...+++..+|++|.|.........+-+. .++...+.+|.|....|-+...++ .-.+++|++.++-
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~GtV- 399 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSH-------------RQFYRDCTISGTI- 399 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCC-------------cEEEEeCEEEEec-
Confidence 3567899999999986532222222221 478899999999987777766543 4578999999742
Q ss_pred ceEEeccCcCCCEEEEEEEeeEEEcCC----ceEEEEeecCCC--ceeecEEEEeeEEccc
Q 011615 301 AAIALGSEMSGGIKDVRAEDITAINTQ----SGVRIKTAVGRG--AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 301 ~gisIGs~~~~~v~nI~v~n~~~~~~~----~Gi~Ikt~~g~~--g~v~nI~f~ni~~~~~ 355 (481)
-+=+|. ....|+||.+.-.. ..-.| |.+++. ..-..+.|.|+++...
T Consensus 400 -DFIFG~------a~avfq~C~I~~r~~~~~~~~~I-TAqgr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 400 -DFLFGD------AAAVFQNCTLLVRKPLLNQACPI-TAHGRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred -cEEecC------ceEEEEccEEEEccCCCCCceeE-ecCCCCCCCCCceEEEEeeEEecC
Confidence 233342 25778999997431 11233 334332 2335688999998764
No 104
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=58.92 E-value=1.4e+02 Score=32.41 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=70.8
Q ss_pred eccccEEEEeEEEECCCCCCC--CCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCC
Q 011615 222 VYSSNVLIQGLTIRAPIDSPN--TDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPD 299 (481)
Q Consensus 222 ~~~~nv~i~~~~i~~~~~~~n--~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 299 (481)
...+++..+|++|.|...... +..+.+ .++.+.+.+|.|....|-+...+ ..-.+++|++.++-
T Consensus 314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v-~~D~~~fy~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~GtV 379 (541)
T PLN02416 314 VSGEGFLARDITIENTAGPEKHQAVALRV-NADLVALYRCTINGYQDTLYVHS-------------FRQFYRECDIYGTI 379 (541)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEE-cCccEEEEcceEecccchhccCC-------------CceEEEeeEEeecc
Confidence 356889999999998653222 223333 36889999999999877776554 34588999999742
Q ss_pred CceEEeccCcCCCEEEEEEEeeEEEcCCc--e-EEEEeecCCC--ceeecEEEEeeEEccc
Q 011615 300 SAAIALGSEMSGGIKDVRAEDITAINTQS--G-VRIKTAVGRG--AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 300 ~~gisIGs~~~~~v~nI~v~n~~~~~~~~--G-i~Ikt~~g~~--g~v~nI~f~ni~~~~~ 355 (481)
-+=+|. -...|+||++.-... | ...-|.+++. ..-..+.|.|+++...
T Consensus 380 --DFIFG~------a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 380 --DYIFGN------AAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred --ceeecc------ceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecC
Confidence 233442 357789999865321 1 1122333321 2234688999998754
No 105
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=58.79 E-value=1.2e+02 Score=32.73 Aligned_cols=113 Identities=13% Similarity=0.133 Sum_probs=71.2
Q ss_pred eeccccEEEEeEEEECCCCCC--CCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCC
Q 011615 221 PVYSSNVLIQGLTIRAPIDSP--NTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISP 298 (481)
Q Consensus 221 ~~~~~nv~i~~~~i~~~~~~~--n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~ 298 (481)
....+++..+|++|.|..... .+-.+.+ .+..+.+.+|.|....|-+...++ .-.++||++.++
T Consensus 319 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv-~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~Gt 384 (548)
T PLN02301 319 AAVGDGFIAQDIWFQNTAGPEKHQAVALRV-SADQAVINRCRIDAYQDTLYAHSL-------------RQFYRDSYITGT 384 (548)
T ss_pred EEECCceEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEeeeeeeccccceecCC-------------cEEEEeeEEEec
Confidence 345688999999999864322 2222333 368899999999998887776553 348899999974
Q ss_pred CCceEEeccCcCCCEEEEEEEeeEEEcCCc--e-EEEEeecCC--CceeecEEEEeeEEccc
Q 011615 299 DSAAIALGSEMSGGIKDVRAEDITAINTQS--G-VRIKTAVGR--GAYVKEIYVRRMTMKTM 355 (481)
Q Consensus 299 ~~~gisIGs~~~~~v~nI~v~n~~~~~~~~--G-i~Ikt~~g~--~g~v~nI~f~ni~~~~~ 355 (481)
- -+=+|. -...|+||.+.-... | -..-|.+++ ...-..+.|.|+++...
T Consensus 385 V--DFIFG~------a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 385 V--DFIFGN------AAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred c--ceeccc------ceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecC
Confidence 2 233332 367789999865321 1 011233332 12335788999998764
No 106
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=58.44 E-value=2.5e+02 Score=30.35 Aligned_cols=113 Identities=10% Similarity=0.076 Sum_probs=70.9
Q ss_pred eeccccEEEEeEEEECCCCCCCCCCcCCC-CCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCC
Q 011615 221 PVYSSNVLIQGLTIRAPIDSPNTDGINPD-SCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPD 299 (481)
Q Consensus 221 ~~~~~nv~i~~~~i~~~~~~~n~DGI~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 299 (481)
....+++..+|++|.|.........+-+. .+..+.+.+|.|....|-+...++ .-.+++|++.++
T Consensus 301 ~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~IeGt- 366 (530)
T PLN02933 301 GVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA-------------KQFYRECDIYGT- 366 (530)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC-------------ceEEEeeEEecc-
Confidence 44567899999999986432222222222 368899999999998787766553 348899999974
Q ss_pred CceEEeccCcCCCEEEEEEEeeEEEcCCc----eEEEEeecCCC--ceeecEEEEeeEEccc
Q 011615 300 SAAIALGSEMSGGIKDVRAEDITAINTQS----GVRIKTAVGRG--AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 300 ~~gisIGs~~~~~v~nI~v~n~~~~~~~~----Gi~Ikt~~g~~--g~v~nI~f~ni~~~~~ 355 (481)
--+=+|. ....|+||.+.-... .-.| |.+++. ..-..+.|.|+++...
T Consensus 367 -VDFIFG~------a~avFq~C~i~~~~~~~~~~~~i-TAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 367 -IDFIFGN------AAVVFQNCSLYARKPNPNHKIAF-TAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred -cceeccC------ceEEEeccEEEEeccCCCCceEE-EecCCCCCCCCceEEEEeeEEecC
Confidence 2333443 246789998864321 1123 333321 2234688999998764
No 107
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=58.36 E-value=1.3e+02 Score=32.68 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=70.7
Q ss_pred eccccEEEEeEEEECCCCCCCCCC--cCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCC
Q 011615 222 VYSSNVLIQGLTIRAPIDSPNTDG--INPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPD 299 (481)
Q Consensus 222 ~~~~nv~i~~~~i~~~~~~~n~DG--I~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 299 (481)
...+++..+|++|.|......... +.+ .++...+.+|.|....|-+...++ .-.+++|++.++-
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv-~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~GtV 402 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRS-GADLSTFYSCSFEAYQDTLYTHSL-------------RQFYRECDIYGTV 402 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEeeeeccCCcceEECCC-------------CEEEEeeEEeccc
Confidence 356899999999999643222222 333 467899999999998887776653 3488999999742
Q ss_pred CceEEeccCcCCCEEEEEEEeeEEEcCCc--e--EEEEeecCC--CceeecEEEEeeEEccc
Q 011615 300 SAAIALGSEMSGGIKDVRAEDITAINTQS--G--VRIKTAVGR--GAYVKEIYVRRMTMKTM 355 (481)
Q Consensus 300 ~~gisIGs~~~~~v~nI~v~n~~~~~~~~--G--i~Ikt~~g~--~g~v~nI~f~ni~~~~~ 355 (481)
-+=+|. -...++||.+..... + -.| |.+++ ...-..+.|.|+++...
T Consensus 403 --DFIFG~------a~avfq~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 403 --DFIFGN------AAVVFQNCNLYPRLPMQGQFNTI-TAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred --ceeccc------ceEEEeccEEEEecCCCCCccee-eecCCCCCCCCCEEEEEcCEEecC
Confidence 233332 367789999965321 1 122 22322 12235688999988753
No 108
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=57.95 E-value=74 Score=32.85 Aligned_cols=55 Identities=16% Similarity=0.339 Sum_probs=30.9
Q ss_pred eeEEEEEEEEeCCCCceEEeccCc-CCCEEEEEEEeeEEEcCCceEEEEeecCCCceeecEEEEeeEEcc
Q 011615 286 QHLIIRRLICISPDSAAIALGSEM-SGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKT 354 (481)
Q Consensus 286 ~nI~I~n~~~~~~~~~gisIGs~~-~~~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~f~ni~~~~ 354 (481)
.|-.|+|+.... ..|+.+|... .+.++||++++|. ..|+.+++. +=.|.||++.+
T Consensus 311 tnHiidNi~~~~--~lGVG~~~DG~~~yvsni~~~d~~----g~G~~~~~~--------~~~ftNitvId 366 (549)
T PF09251_consen 311 TNHIIDNILVRG--SLGVGIGMDGKGGYVSNITVQDCA----GAGIFIRGT--------NKVFTNITVID 366 (549)
T ss_dssp ---EEEEEEEES---SSESCEEECCS-EEEEEEEES-S----SESEEEECC--------S-EEEEEEEES
T ss_pred hhhhhhhhheec--cceeeeeecCCCceEeeEEeeccc----CCceEEeec--------CCceeeeEEEe
Confidence 566788988887 5677776644 3457777777764 357777653 34455555543
No 109
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=57.64 E-value=2.3e+02 Score=31.16 Aligned_cols=112 Identities=9% Similarity=0.074 Sum_probs=71.7
Q ss_pred eeccccEEEEeEEEECCCCC--CCCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCC
Q 011615 221 PVYSSNVLIQGLTIRAPIDS--PNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISP 298 (481)
Q Consensus 221 ~~~~~nv~i~~~~i~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~ 298 (481)
....+++..+|++|.|.... ..+-.+.+ .+....+.+|.|....|-+....+ .-.++||++.++
T Consensus 368 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v-~~Dr~~f~~c~~~G~QDTLy~~~~-------------Rqyy~~C~I~Gt 433 (596)
T PLN02745 368 VALGEGFMAKSMGFRNTAGPEKHQAVAIRV-QSDRSIFLNCRFEGYQDTLYAQTH-------------RQFYRSCVITGT 433 (596)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEE-cCCcEEEEeeEEeecccccccCCC-------------cEEEEeeEEEee
Confidence 34678899999999985421 12223333 478899999999997777665543 458899999974
Q ss_pred CCceEEeccCcCCCEEEEEEEeeEEEcCCc----eEEEEeecCCC--ceeecEEEEeeEEccc
Q 011615 299 DSAAIALGSEMSGGIKDVRAEDITAINTQS----GVRIKTAVGRG--AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 299 ~~~gisIGs~~~~~v~nI~v~n~~~~~~~~----Gi~Ikt~~g~~--g~v~nI~f~ni~~~~~ 355 (481)
- -+=+|. -...|+||.+.-... .-.| |.+++. ..-..+.|.|+++...
T Consensus 434 V--DFIFG~------a~avf~~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 434 I--DFIFGD------AAAIFQNCLIFVRKPLPNQQNTV-TAQGRVDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred c--cEEecc------eeEEEEecEEEEecCCCCCCceE-EecCCCCCCCCceEEEEeeEEecC
Confidence 2 233442 367789999874311 1122 333321 2335788999998864
No 110
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=57.35 E-value=1.9e+02 Score=30.22 Aligned_cols=126 Identities=10% Similarity=0.056 Sum_probs=71.6
Q ss_pred EeeccccEEEEeEEEECCCCCC------CCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEE
Q 011615 220 HPVYSSNVLIQGLTIRAPIDSP------NTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRL 293 (481)
Q Consensus 220 ~~~~~~nv~i~~~~i~~~~~~~------n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~ 293 (481)
.....+++.++|++|.|..... .+-.+.+ ..+.+.+.+|.|....|-+-......+.+... .-...-.++||
T Consensus 201 v~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv-~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~-~~~gRqYf~~C 278 (422)
T PRK10531 201 FWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRT-DGDKVQIENVNILGRQDTFFVTNSGVQNRLET-DRQPRTYVKNS 278 (422)
T ss_pred EEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEE-cCCcEEEEeeEEecccceeeeccccccccccc-cccccEEEEeC
Confidence 3457889999999999964211 1122222 36889999999998777776643210000000 00235788999
Q ss_pred EEeCCCCceEEeccCcCCCEEEEEEEeeEEEcCCc----eEEEEeecCCCceeecEEEEeeEEccc
Q 011615 294 ICISPDSAAIALGSEMSGGIKDVRAEDITAINTQS----GVRIKTAVGRGAYVKEIYVRRMTMKTM 355 (481)
Q Consensus 294 ~~~~~~~~gisIGs~~~~~v~nI~v~n~~~~~~~~----Gi~Ikt~~g~~g~v~nI~f~ni~~~~~ 355 (481)
++.+. -=+=+|. -...|+||++..... .-.|-........-....|.|+++...
T Consensus 279 yIeG~--VDFIFG~------g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 279 YIEGD--VDFVFGR------GAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred EEeec--ccEEccC------ceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecC
Confidence 99974 2333443 256788888875421 122211111112234578888888764
No 111
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=56.19 E-value=2.2e+02 Score=30.55 Aligned_cols=113 Identities=11% Similarity=0.039 Sum_probs=71.9
Q ss_pred eccccEEEEeEEEECCCCCCCCCCcCCC-CCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCC
Q 011615 222 VYSSNVLIQGLTIRAPIDSPNTDGINPD-SCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDS 300 (481)
Q Consensus 222 ~~~~nv~i~~~~i~~~~~~~n~DGI~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~ 300 (481)
...+++..+|++|.|.........+-+. .+....+.+|.|....|-+...++ .-.+++|++.++-
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~-------------RqyyrdC~I~GtV- 346 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRD-------------RQFYRECFITGTV- 346 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCC-------------CEEEEeeEEeecc-
Confidence 3567888999999986432222222222 468899999999998887766543 4578999999742
Q ss_pred ceEEeccCcCCCEEEEEEEeeEEEcCCc----eEEEEeecCCC--ceeecEEEEeeEEccce
Q 011615 301 AAIALGSEMSGGIKDVRAEDITAINTQS----GVRIKTAVGRG--AYVKEIYVRRMTMKTMK 356 (481)
Q Consensus 301 ~gisIGs~~~~~v~nI~v~n~~~~~~~~----Gi~Ikt~~g~~--g~v~nI~f~ni~~~~~~ 356 (481)
-+=+|. -...|+||.+..... .-.| |.+++. ..-..+.|.|+++....
T Consensus 347 -DFIFG~------a~avFq~C~I~sr~~~~~~~~~I-TAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 347 -DFICGN------AAAVFQFCQIVARQPMMGQSNVI-TAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred -ceEecc------eEEEEEccEEEEecCCCCCCEEE-EeCCCCCCCCCcEEEEEeeEEecCC
Confidence 233342 367889999975321 1133 334332 22346889999987643
No 112
>PLN02497 probable pectinesterase
Probab=56.13 E-value=1.7e+02 Score=29.57 Aligned_cols=20 Identities=20% Similarity=0.291 Sum_probs=14.6
Q ss_pred EEEeeccEEEEeeEEeeCCC
Q 011615 197 EVMFSDNVQISNLTLIDSPS 216 (481)
Q Consensus 197 ~~~~~~nv~I~g~~i~ns~~ 216 (481)
.....+++..+||+|+|+..
T Consensus 110 ~~v~a~~f~a~nlT~~Nt~~ 129 (331)
T PLN02497 110 FSTLADNTVVKSITFANSYN 129 (331)
T ss_pred EEEecCCeEEEccEEEeCCC
Confidence 34567788888888888743
No 113
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=55.66 E-value=2.3e+02 Score=30.51 Aligned_cols=112 Identities=9% Similarity=0.070 Sum_probs=70.9
Q ss_pred eeccccEEEEeEEEECCCCCCC--CCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCC
Q 011615 221 PVYSSNVLIQGLTIRAPIDSPN--TDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISP 298 (481)
Q Consensus 221 ~~~~~nv~i~~~~i~~~~~~~n--~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~ 298 (481)
....+++..+|++|.|...... +-.+.+ .++...+.+|.|....|-+...++ .-.+++|++.++
T Consensus 289 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv-~~D~~~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~Gt 354 (520)
T PLN02201 289 AVSGRGFIARDITFQNTAGPEKHQAVALRS-DSDLSVFYRCAMRGYQDTLYTHTM-------------RQFYRECRITGT 354 (520)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEE-cCCcEEEEeeeeeccCCeeEeCCC-------------CEEEEeeEEeec
Confidence 3457888999999998653222 222333 368899999999998888776653 346789999974
Q ss_pred CCceEEeccCcCCCEEEEEEEeeEEEcCC----ceEEEEeecCC--CceeecEEEEeeEEccc
Q 011615 299 DSAAIALGSEMSGGIKDVRAEDITAINTQ----SGVRIKTAVGR--GAYVKEIYVRRMTMKTM 355 (481)
Q Consensus 299 ~~~gisIGs~~~~~v~nI~v~n~~~~~~~----~Gi~Ikt~~g~--~g~v~nI~f~ni~~~~~ 355 (481)
- -+=+|. -...++||++.... ..-.| |.+++ ...-..+.|.|+++...
T Consensus 355 V--DFIFG~------a~avf~~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 355 V--DFIFGD------ATAVFQNCQILAKKGLPNQKNTI-TAQGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred c--cEEecC------ceEEEEccEEEEecCCCCCCceE-EecCCCCCCCCcEEEEEeeEEecC
Confidence 2 333442 25778999987531 11122 32332 12334688899988753
No 114
>PLN02197 pectinesterase
Probab=55.54 E-value=1.5e+02 Score=32.47 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=72.1
Q ss_pred eeccccEEEEeEEEECCCCC--CCCCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCC
Q 011615 221 PVYSSNVLIQGLTIRAPIDS--PNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISP 298 (481)
Q Consensus 221 ~~~~~nv~i~~~~i~~~~~~--~n~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~ 298 (481)
....+++..+|++|.|.... +.+-.+.+ .+....+.+|.|....|-+...++ .-.+++|++.++
T Consensus 360 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv-~~D~~~fy~C~f~GyQDTLy~~~~-------------Rqyy~~C~I~Gt 425 (588)
T PLN02197 360 QVESEGFMAKWIGFKNTAGPMGHQAVAIRV-NGDRAVIFNCRFDGYQDTLYVNNG-------------RQFYRNIVVSGT 425 (588)
T ss_pred EEECCcEEEEEeEEEeCCCCCCCceEEEEe-cCCcEEEEEeEEEecCcceEecCC-------------CEEEEeeEEEec
Confidence 34578899999999996432 22233333 478899999999998888776653 347899999974
Q ss_pred CCceEEeccCcCCCEEEEEEEeeEEEcCC--ceE-EEEeecCCC---ceeecEEEEeeEEccc
Q 011615 299 DSAAIALGSEMSGGIKDVRAEDITAINTQ--SGV-RIKTAVGRG---AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 299 ~~~gisIGs~~~~~v~nI~v~n~~~~~~~--~Gi-~Ikt~~g~~---g~v~nI~f~ni~~~~~ 355 (481)
- -+=+|. ....|+||++.-.. .|. ..-|.+++. ..-..+.|.|+++...
T Consensus 426 V--DFIFG~------a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 426 V--DFIFGK------SATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPD 480 (588)
T ss_pred c--cccccc------eeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecC
Confidence 2 222332 24778999886421 111 122445432 2235689999998764
No 115
>PLN02176 putative pectinesterase
Probab=55.30 E-value=2.4e+02 Score=28.58 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=12.6
Q ss_pred EeeccEEEEeeEEeeCC
Q 011615 199 MFSDNVQISNLTLIDSP 215 (481)
Q Consensus 199 ~~~~nv~I~g~~i~ns~ 215 (481)
..++++..+||+|+|..
T Consensus 119 v~a~~F~a~nlT~~Nt~ 135 (340)
T PLN02176 119 SYASNIIITGITFKNTY 135 (340)
T ss_pred EECCCEEEEeeEEEeCC
Confidence 35778888888888863
No 116
>PLN02314 pectinesterase
Probab=53.92 E-value=1.6e+02 Score=32.34 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=71.2
Q ss_pred eeccccEEEEeEEEECCCCCCCCC--CcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCC
Q 011615 221 PVYSSNVLIQGLTIRAPIDSPNTD--GINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISP 298 (481)
Q Consensus 221 ~~~~~nv~i~~~~i~~~~~~~n~D--GI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~ 298 (481)
....+++..+|++|.|........ .+.+ .+....+.+|.|....|-+...++ .-.++||++.++
T Consensus 361 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv-~~D~~~f~~c~~~G~QDTLy~~~~-------------rq~y~~C~I~Gt 426 (586)
T PLN02314 361 AAAGKGFIAKDMGFINTAGAAKHQAVAFRS-GSDMSVFYQCSFDAFQDTLYAHSN-------------RQFYRDCDITGT 426 (586)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEeeEEEeccchheeCCC-------------CEEEEeeEEEec
Confidence 346788899999999864322222 2333 467889999999988777766553 347889999974
Q ss_pred CCceEEeccCcCCCEEEEEEEeeEEEcCC--ce-EEEEeecCC--CceeecEEEEeeEEccce
Q 011615 299 DSAAIALGSEMSGGIKDVRAEDITAINTQ--SG-VRIKTAVGR--GAYVKEIYVRRMTMKTMK 356 (481)
Q Consensus 299 ~~~gisIGs~~~~~v~nI~v~n~~~~~~~--~G-i~Ikt~~g~--~g~v~nI~f~ni~~~~~~ 356 (481)
- -+=+|. -...|+||.+.-.. .+ -..-|.+++ ...-..+.|.|+++....
T Consensus 427 v--DFIFG~------a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 427 I--DFIFGN------AAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred c--ceeccC------ceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCC
Confidence 2 233432 25778999987431 10 112233433 133456889999987743
No 117
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=53.58 E-value=1.6e+02 Score=31.82 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=69.0
Q ss_pred eccccEEEEeEEEECCCCCCCCCCcCCC-CCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCC
Q 011615 222 VYSSNVLIQGLTIRAPIDSPNTDGINPD-SCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDS 300 (481)
Q Consensus 222 ~~~~nv~i~~~~i~~~~~~~n~DGI~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~ 300 (481)
...+++..+|++|.|.........+-+. .++...+.+|.|....|-+...++ .-.+++|++.++-
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~-------------Rqyy~~C~I~GtV- 374 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQ-------------RQFYRECYIYGTV- 374 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCCC-------------ceEEEeeEEeecc-
Confidence 4567888999999985432222222221 367899999999987777665543 3478899998742
Q ss_pred ceEEeccCcCCCEEEEEEEeeEEEcCCc--e--EEEEeecCCC--ceeecEEEEeeEEccc
Q 011615 301 AAIALGSEMSGGIKDVRAEDITAINTQS--G--VRIKTAVGRG--AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 301 ~gisIGs~~~~~v~nI~v~n~~~~~~~~--G--i~Ikt~~g~~--g~v~nI~f~ni~~~~~ 355 (481)
-+=+|. -...|+||++.-... | -.| |.+++. ..-..+.|.|+++...
T Consensus 375 -DFIFG~------a~avf~~C~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 375 -DFIFGN------AAAVFQNCIILPRRPLKGQANVI-TAQGRADPFQNTGISIHNSRILPA 427 (539)
T ss_pred -ceEecc------cceEEeccEEEEecCCCCCcceE-ecCCCCCCCCCceEEEEeeEEecC
Confidence 233442 256788888865321 1 122 333321 2335788999998764
No 118
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=53.30 E-value=2.2e+02 Score=31.23 Aligned_cols=113 Identities=12% Similarity=0.131 Sum_probs=71.1
Q ss_pred eccccEEEEeEEEECCCCCCC--CCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCC
Q 011615 222 VYSSNVLIQGLTIRAPIDSPN--TDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPD 299 (481)
Q Consensus 222 ~~~~nv~i~~~~i~~~~~~~n--~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 299 (481)
...+++..+|++|.|...... +-.+.+ .+....+.+|.|....|-+...++ .-.+++|++.++-
T Consensus 359 v~~~~F~a~~itf~Ntag~~~~QAvAlrv-~~D~~~fy~C~~~g~QDTLy~~~~-------------rq~y~~c~I~Gtv 424 (587)
T PLN02313 359 AVGERFLARDITFQNTAGPSKHQAVALRV-GSDFSAFYQCDMFAYQDTLYVHSN-------------RQFFVKCHITGTV 424 (587)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEeeeEecccchhccCCC-------------cEEEEeeEEeecc
Confidence 456788999999998643222 223333 468899999999988787766553 3378999999742
Q ss_pred CceEEeccCcCCCEEEEEEEeeEEEcCC--ce-EEEEeecCCC--ceeecEEEEeeEEccce
Q 011615 300 SAAIALGSEMSGGIKDVRAEDITAINTQ--SG-VRIKTAVGRG--AYVKEIYVRRMTMKTMK 356 (481)
Q Consensus 300 ~~gisIGs~~~~~v~nI~v~n~~~~~~~--~G-i~Ikt~~g~~--g~v~nI~f~ni~~~~~~ 356 (481)
-+=+|. ....|+||.+.-.. .| -..-|.+++. ..-..+.|.|+++....
T Consensus 425 --DFIFG~------a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 425 --DFIFGN------AAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred --ceeccc------eeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecCC
Confidence 233332 36778999997532 11 1122334322 23357889999987643
No 119
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=53.03 E-value=2.1e+02 Score=31.29 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=71.0
Q ss_pred eccccEEEEeEEEECCCCCCCCCCcCCC-CCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCCC
Q 011615 222 VYSSNVLIQGLTIRAPIDSPNTDGINPD-SCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPDS 300 (481)
Q Consensus 222 ~~~~nv~i~~~~i~~~~~~~n~DGI~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~~ 300 (481)
...+++..+|++|.|.........+-+. .++...+.+|.|....|-+...++ .-.+++|++.++-
T Consensus 344 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~-------------Rqyy~~C~I~GtV- 409 (572)
T PLN02990 344 INGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSH-------------RQFFRDCTVSGTV- 409 (572)
T ss_pred EEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCCC-------------cEEEEeeEEeccc-
Confidence 3567899999999986432222222221 468899999999988777766543 3477999999742
Q ss_pred ceEEeccCcCCCEEEEEEEeeEEEcCC--ce-EEEEeecCCC--ceeecEEEEeeEEccce
Q 011615 301 AAIALGSEMSGGIKDVRAEDITAINTQ--SG-VRIKTAVGRG--AYVKEIYVRRMTMKTMK 356 (481)
Q Consensus 301 ~gisIGs~~~~~v~nI~v~n~~~~~~~--~G-i~Ikt~~g~~--g~v~nI~f~ni~~~~~~ 356 (481)
-+=+|. -...|+||++.-.. .| -..-|.+++. ..-..+.|.|+++....
T Consensus 410 -DFIFG~------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 410 -DFIFGD------AKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred -ceEccC------ceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 233342 25778999997432 11 1122333322 22346889999987743
No 120
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=52.24 E-value=2.4e+02 Score=30.90 Aligned_cols=112 Identities=12% Similarity=0.107 Sum_probs=71.3
Q ss_pred eeccccEEEEeEEEECCCCCCC--CCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCC
Q 011615 221 PVYSSNVLIQGLTIRAPIDSPN--TDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISP 298 (481)
Q Consensus 221 ~~~~~nv~i~~~~i~~~~~~~n--~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~ 298 (481)
....+++..+|++|.|...... +-.+.+ .+....+.+|.|....|-+...++ .-.+++|++.++
T Consensus 356 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv-~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~Gt 421 (587)
T PLN02484 356 AATGAGFIARDMTFENWAGPAKHQAVALRV-GADHAVVYRCNIIGYQDTLYVHSN-------------RQFFRECDIYGT 421 (587)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEeeeEeccCcccccCCC-------------cEEEEecEEEec
Confidence 4467889999999998643222 222333 468899999999998887766553 347889999974
Q ss_pred CCceEEeccCcCCCEEEEEEEeeEEEcCC----ceEEEEeecCCC--ceeecEEEEeeEEccc
Q 011615 299 DSAAIALGSEMSGGIKDVRAEDITAINTQ----SGVRIKTAVGRG--AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 299 ~~~gisIGs~~~~~v~nI~v~n~~~~~~~----~Gi~Ikt~~g~~--g~v~nI~f~ni~~~~~ 355 (481)
- -+=+|. -...|+||++.-.. ..-.| |.+++. ..-..+.|.|+++...
T Consensus 422 V--DFIFG~------a~avfq~C~i~~~~~~~~~~~~I-TAq~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 422 V--DFIFGN------AAVVLQNCSIYARKPMAQQKNTI-TAQNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred c--ceeccc------ceeEEeccEEEEecCCCCCceEE-EecCCCCCCCCcEEEEEeeEEecC
Confidence 2 233332 35678999997431 11122 333321 2345788999998764
No 121
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=51.79 E-value=16 Score=20.70 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=11.2
Q ss_pred EEEEEeeEEEcCCc-eEEEE
Q 011615 315 DVRAEDITAINTQS-GVRIK 333 (481)
Q Consensus 315 nI~v~n~~~~~~~~-Gi~Ik 333 (481)
+++|+++++.+... |+.+.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 45666666666554 66554
No 122
>PLN02304 probable pectinesterase
Probab=43.76 E-value=3.8e+02 Score=27.57 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=14.1
Q ss_pred eEEEEeeccEEEEeeEEeeCC
Q 011615 195 LIEVMFSDNVQISNLTLIDSP 215 (481)
Q Consensus 195 ~i~~~~~~nv~I~g~~i~ns~ 215 (481)
.-.....+++..+||+|+|+.
T Consensus 155 aTv~v~a~~F~a~nITf~Nta 175 (379)
T PLN02304 155 ASVQVFASNFIAKNISFMNVA 175 (379)
T ss_pred EEEEEECCCeEEEeeEEEecC
Confidence 334445678888888888763
No 123
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=42.50 E-value=1.5e+02 Score=32.30 Aligned_cols=111 Identities=13% Similarity=0.131 Sum_probs=69.7
Q ss_pred eccccEEEEeEEEECCCCCCC--CCCcCCCCCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCC
Q 011615 222 VYSSNVLIQGLTIRAPIDSPN--TDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPD 299 (481)
Q Consensus 222 ~~~~nv~i~~~~i~~~~~~~n--~DGI~~~~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 299 (481)
...+++..+|++|.|...... +-.+.+ .+..+.+.+|.|....|-+...++ .-.++||++.++-
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v-~~D~~~fy~c~~~G~QDTLy~~~~-------------rq~y~~C~I~Gtv 407 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMS-SADLSVFYRCTMDAFQDTLYAHAQ-------------RQFYRECNIYGTV 407 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEE-cCCcEEEEEeEEEeccchhccCCC-------------ceEEEeeEEeccc
Confidence 356789999999998643222 222332 468899999999987777766543 3468999999742
Q ss_pred CceEEeccCcCCCEEEEEEEeeEEEcCCc----eEEEEeecCC--CceeecEEEEeeEEccc
Q 011615 300 SAAIALGSEMSGGIKDVRAEDITAINTQS----GVRIKTAVGR--GAYVKEIYVRRMTMKTM 355 (481)
Q Consensus 300 ~~gisIGs~~~~~v~nI~v~n~~~~~~~~----Gi~Ikt~~g~--~g~v~nI~f~ni~~~~~ 355 (481)
-+=+|. -...|+||.+.-... .-.| |.+++ ...-..+.|.|+++...
T Consensus 408 --DFIFG~------a~avfq~c~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~ 460 (565)
T PLN02468 408 --DFIFGN------SAVVFQNCNILPRRPMKGQQNTI-TAQGRTDPNQNTGISIQNCTILPL 460 (565)
T ss_pred --ceeecc------ceEEEeccEEEEecCCCCCCceE-EecCCCCCCCCceEEEEccEEecC
Confidence 233442 367789999864311 1122 22332 12335688999988764
No 124
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=41.45 E-value=67 Score=25.85 Aligned_cols=58 Identities=22% Similarity=0.317 Sum_probs=28.9
Q ss_pred eecCccC-CCccchHHHHHHHHHHhhhcccCCCcEEEeCCCcceee---eEEe--ccceeEEEccCcEEE
Q 011615 60 TDFGGVG-DGKTSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTG---SFNL--TSHFTLYIHKDALLL 123 (481)
Q Consensus 60 ~dyGA~g-DG~tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl~~---~i~l--~s~~~l~l~~ga~i~ 123 (481)
.|||..+ +.....-..|++||..--. ...+ |..|||+.. .+.+ ..+..+.++.+|..+
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi~----~~~t--v~~GtYr~~~~skV~~N~~T~~~Vi~d~~G~Fv 73 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHIK----NPDT--VEKGTYRRVKDSKVYFNPKTNNVVIIDKDGNFV 73 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHHH-----TT---EE--BETTSTT-EEEEETTTTEEEEE-TTS-EE
T ss_pred cccCcccCCCChhhHHHHHHHHHHHhC----CCCe--EeccceecCCCcEEEEeCCCCeEEEEcCCCCEE
Confidence 4799888 5555566889999988654 3455 459999732 2222 455555555555544
No 125
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=40.39 E-value=1.7e+02 Score=31.64 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=70.8
Q ss_pred eeccccEEEEeEEEECCCCCCCCCCcCCC-CCccEEEEecEEecCCceeeecCCCCccCcccCCceeeEEEEEEEEeCCC
Q 011615 221 PVYSSNVLIQGLTIRAPIDSPNTDGINPD-SCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQHLIIRRLICISPD 299 (481)
Q Consensus 221 ~~~~~nv~i~~~~i~~~~~~~n~DGI~~~-~s~nV~I~n~~i~~gDD~iai~sg~~~~g~~~~~~s~nI~I~n~~~~~~~ 299 (481)
....+++..+|++|.|.........+-+. .+....+.+|.|....|-+...++ .-.++||++.++-
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~-------------rq~y~~c~I~GtV 375 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSL-------------RQFYRECDIYGTV 375 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCC-------------cEEEEeeEEeecc
Confidence 34568899999999986432222223222 467799999999998887766553 3578999999742
Q ss_pred CceEEeccCcCCCEEEEEEEeeEEEcCCc----eEEEEeecCCC--ceeecEEEEeeEEccc
Q 011615 300 SAAIALGSEMSGGIKDVRAEDITAINTQS----GVRIKTAVGRG--AYVKEIYVRRMTMKTM 355 (481)
Q Consensus 300 ~~gisIGs~~~~~v~nI~v~n~~~~~~~~----Gi~Ikt~~g~~--g~v~nI~f~ni~~~~~ 355 (481)
-+=+|. -...|+||++.-... .-.| |.+++. ..-..+.|.|+++...
T Consensus 376 --DFIFG~------a~avfq~c~i~~r~~~~~~~~~i-TA~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 376 --DFIFGN------AAAIFQNCNLYARKPMANQKNAF-TAQGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred --ceEeec------ceeeeeccEEEEecCCCCCCceE-EecCCCCCCCCceEEEEecEEecC
Confidence 233442 357789999965310 1122 223221 2234688999998764
No 126
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=31.42 E-value=1.9e+02 Score=24.18 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=8.1
Q ss_pred eccEEEEeeEEee
Q 011615 201 SDNVQISNLTLID 213 (481)
Q Consensus 201 ~~nv~I~g~~i~n 213 (481)
..+++++|+++.+
T Consensus 44 ~~~~~~~G~~~~~ 56 (146)
T smart00722 44 SNDVRVDGITIGG 56 (146)
T ss_pred CCCCEEECeEEEe
Confidence 3455677777765
No 127
>PF02741 FTR_C: FTR, proximal lobe; InterPro: IPR002770 Formylmethanofuran:tetrahyromethanopterin formyltransferase (Ftr) is involved in C1 metabolism in methanogenic archaea, sulphate-reducing archaea and methylotrophic bacteria. It catalyses the following reversible reaction: N-formylmethanofuran + 5,6,7,8-tetrahydromethanopterin = methanofuran + 5-formyl-5,6,7,8-tetrahydromethanopterin Ftr from the thermophilic methanogen Methanopyrus kandleri (optimum growth temperature 98 degrees C) is a hyperthermophilic enzyme that is absolutely dependent on the presence of lyotropic salts for activity and thermostability. The crystal structure of Ftr, determined to a reveals a homotetramer composed essentially of two dimers. Each subunit is subdivided into two tightly associated lobes both consisting of a predominantly antiparallel beta sheet flanked by alpha helices forming an alpha/beta sandwich structure. The approximate location of the active site was detected in a region close to the dimer interface []. Ftr from the mesophilic methanogen Methanosarcina barkeri and the sulphate-reducing archaeon Archaeoglobus fulgidus have a similar structure []. In the methylotrophic bacterium Methylobacterium extorquens, Ftr interacts with three other polypeptides to form an Ftr/cyclohydrolase complex which catalyses the hydrolysis of formyl-tetrahydromethanopterin to formate during growth on C1 substrates [].; GO: 0016740 transferase activity, 0006730 one-carbon metabolic process; PDB: 1M5S_B 1M5H_E 1FTR_C 2FHJ_B 2FHK_D.
Probab=27.42 E-value=51 Score=28.77 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=24.8
Q ss_pred CCCccch--HHHHHHHHHHhhhcccCCCcEEEeCCCcc--eeeeEEe
Q 011615 66 GDGKTSN--TKAFNTAISNLSKYAADGGAQLIVPPGKW--LTGSFNL 108 (481)
Q Consensus 66 gDG~tDd--t~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Y--l~~~i~l 108 (481)
=||.+.+ .+|+++.|+++++ ..+++.|-+|.| .+++.++
T Consensus 103 IdGl~~~av~~Amr~Gi~Aa~~----~~Gv~~IsAGNYGGkLG~~~f 145 (150)
T PF02741_consen 103 IDGLSEEAVAEAMRAGIEAACA----VPGVVRISAGNYGGKLGPYHF 145 (150)
T ss_dssp EEESSHHHHHHHHHHHHHHHTT----STTEEEEE---STTSSSSEEE
T ss_pred EcCCCHHHHHHHHHHHHHHHhc----CCCeEEEecCCcCCccCccee
Confidence 3454333 5688888888874 679999999999 5665444
No 128
>TIGR03119 one_C_fhcD formylmethanofuran--tetrahydromethanopterin N-formyltransferase. Members of this protein family are the FhcD protein of tetrahydromethanopterin (H4MPT)-dependent C-1 carrier metabolism. In the archaea, FhcD is designated formylmethanofuran--tetrahydromethanopterin N-formyltransferase, while in bacteria it is commonly designated as formyltransferase/hydrolase complex subunit D. FhcD is essential for one-carbon metabolism in at least three groups of prokaryotes: methanogenic archaea, sulfate-reducing archaea, and methylotrophic bacteria.
Probab=25.77 E-value=83 Score=30.56 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=30.7
Q ss_pred cCCCccch--HHHHHHHHHHhhhcccCCCcEEEeCCCcc--eeeeEEe
Q 011615 65 VGDGKTSN--TKAFNTAISNLSKYAADGGAQLIVPPGKW--LTGSFNL 108 (481)
Q Consensus 65 ~gDG~tDd--t~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Y--l~~~i~l 108 (481)
+=||.+.+ .+|.++.|++|++ -.+++.|-+|.| .+++.++
T Consensus 239 VIdGl~~~aV~~Amr~Gi~Aa~~----~~Gv~~IsAGNYGGkLG~~~f 282 (287)
T TIGR03119 239 VIDGLNEAAIAEAMRVGILAATE----IPGVVKITAGNYGGKLGPHHI 282 (287)
T ss_pred EEcCCCHHHHHHHHHHHHHHHhc----CCCeEEEecCccCCCCCcceE
Confidence 56777666 7788999999874 478999999999 5565443
No 129
>PRK09752 adhesin; Provisional
Probab=25.62 E-value=1.2e+03 Score=27.88 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=19.8
Q ss_pred EEEEEEeeEEEcCC---ceEEEEeecCCCceeecEEEEeeE
Q 011615 314 KDVRAEDITAINTQ---SGVRIKTAVGRGAYVKEIYVRRMT 351 (481)
Q Consensus 314 ~nI~v~n~~~~~~~---~Gi~Ikt~~g~~g~v~nI~f~ni~ 351 (481)
.++.|.|+.|.+.. .|-.|.+......++-|++.++-.
T Consensus 222 ~~liI~NSsFtnNsA~~~GGAIY~~s~t~p~~~n~~~d~~~ 262 (1250)
T PRK09752 222 GYTIINNTAFTNNTAEGYGGAIYTNSATAPYLIDISVDDSY 262 (1250)
T ss_pred ceEEEeccEEEccccCCcceEEEecCCCCceEEEEEecccc
Confidence 35667777776642 344444433333455555555543
No 130
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=25.03 E-value=1.2e+02 Score=21.58 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHh
Q 011615 14 PHVIKILSTLLTLGL 28 (481)
Q Consensus 14 ~~~~~~~~~~~~~~~ 28 (481)
||..-++.+++++++
T Consensus 1 MRTL~LLaAlLLlAl 15 (52)
T PF00879_consen 1 MRTLALLAALLLLAL 15 (52)
T ss_pred CcHHHHHHHHHHHHH
Confidence 566666656655554
No 131
>PHA00672 hypothetical protein
Probab=24.02 E-value=1.1e+02 Score=26.12 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=16.0
Q ss_pred cEEEeCCCcceeeeEEeccce
Q 011615 92 AQLIVPPGKWLTGSFNLTSHF 112 (481)
Q Consensus 92 ~~v~iP~G~Yl~~~i~l~s~~ 112 (481)
.++.||+|+-|+|.+.--+++
T Consensus 50 Rei~IPkGt~LtG~~hkf~~~ 70 (152)
T PHA00672 50 RTIRIPAGVALTGALIKVSTV 70 (152)
T ss_pred EEEeccCceeeeeeeeEeeEE
Confidence 578999999998876555555
No 132
>PRK09891 cold shock gene; Provisional
Probab=22.50 E-value=63 Score=23.42 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=15.4
Q ss_pred ccCCCCCchHHHHHHHHHHHH
Q 011615 6 KSRNNILHPHVIKILSTLLTL 26 (481)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (481)
-||||+.++|-...+.+++++
T Consensus 5 isqnnirlprgaffisalfff 25 (76)
T PRK09891 5 ISQNNIRLPRGAFFISALFFF 25 (76)
T ss_pred cccCcccccchhHHHHHHHHh
Confidence 489999999986656555544
No 133
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.41 E-value=2.1e+02 Score=24.73 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=21.2
Q ss_pred cchHHHHHHHHHHhhhcccCCCcEEEeCCCcceeeeE
Q 011615 70 TSNTKAFNTAISNLSKYAADGGAQLIVPPGKWLTGSF 106 (481)
Q Consensus 70 tDdt~Aiq~Ai~~a~~~~~~~g~~v~iP~G~Yl~~~i 106 (481)
.++...||+|-..+..- +..-...-+|+|+|-+..+
T Consensus 59 ~~~~~~f~ractsit~d-pv~~~f~~Lk~G~YAvaa~ 94 (151)
T COG4704 59 MSDPSRFQRACTSITGD-PVSKSFYGLKPGKYAVAAF 94 (151)
T ss_pred CCCchHHhhhcccccCC-chhheeecCCCccEEEEEE
Confidence 46788888885554320 0112334479999966544
No 134
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=22.31 E-value=1.8e+02 Score=24.26 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=40.0
Q ss_pred EeeccEEEEeeEEeeC---CCCeEEeeccccEEEEeEEEECCCCCCCCCCcCCCCCccEEEEe-cEEecCCcee
Q 011615 199 MFSDNVQISNLTLIDS---PSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIED-NYIVSGDDCV 268 (481)
Q Consensus 199 ~~~~nv~I~g~~i~ns---~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n-~~i~~gDD~i 268 (481)
..+.+..+.+-.+.+. ..+++.+..+.+..+.+.++. .. .. .+|+++....+..+.+ ..+....|++
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi 143 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGI 143 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcE
Confidence 5556666666666655 367777777666655555554 11 12 6788887777777766 4444444444
No 135
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=21.93 E-value=2.4e+02 Score=23.91 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=21.3
Q ss_pred CCcEEEeCCCcceeeeEEeccceeEEEccCcEEEecCC
Q 011615 90 GGAQLIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQD 127 (481)
Q Consensus 90 ~g~~v~iP~G~Yl~~~i~l~s~~~l~l~~ga~i~~~~~ 127 (481)
.+..|+||+|..++--...+.-..|.+ +|+|.+..+
T Consensus 11 ~g~~V~I~~g~~v~lD~~~~~l~~l~I--~G~L~f~~~ 46 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVSTPKLGSLII--GGTLIFDDD 46 (125)
T ss_pred CCCEEEECCCCEEEEcCCChheeEEEE--EEEEEEccC
Confidence 478999999986432111111123434 788887764
Done!