Query 011616
Match_columns 481
No_of_seqs 306 out of 711
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:20:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.6 1.6E-15 3.4E-20 131.7 5.5 77 365-445 1-81 (102)
2 PF00612 IQ: IQ calmodulin-bin 97.9 1.3E-05 2.7E-10 50.7 3.4 21 131-151 1-21 (21)
3 KOG0160 Myosin class V heavy c 97.8 3.8E-05 8.3E-10 87.6 8.2 66 130-199 672-738 (862)
4 smart00015 IQ Short calmodulin 97.4 0.00014 3E-09 48.1 3.0 22 130-151 2-23 (26)
5 KOG0520 Uncharacterized conser 96.8 0.00081 1.8E-08 77.5 3.3 74 127-200 806-887 (975)
6 KOG0160 Myosin class V heavy c 96.6 0.0052 1.1E-07 70.7 8.1 66 128-196 693-758 (862)
7 PTZ00014 myosin-A; Provisional 96.5 0.0032 7E-08 72.5 5.8 40 133-172 779-819 (821)
8 KOG0164 Myosin class I heavy c 96.3 0.014 3.1E-07 65.5 8.5 60 131-201 696-756 (1001)
9 PF00612 IQ: IQ calmodulin-bin 95.2 0.024 5.1E-07 35.7 3.0 18 155-172 3-20 (21)
10 KOG2128 Ras GTPase-activating 94.2 0.12 2.5E-06 61.9 7.6 73 130-202 564-645 (1401)
11 COG5022 Myosin heavy chain [Cy 92.4 0.25 5.5E-06 59.5 6.8 44 130-173 744-788 (1463)
12 smart00015 IQ Short calmodulin 92.2 0.14 3E-06 33.7 2.5 19 154-172 4-22 (26)
13 PTZ00014 myosin-A; Provisional 92.0 0.37 8E-06 56.0 7.4 40 155-197 779-818 (821)
14 KOG4427 E3 ubiquitin protein l 86.9 0.77 1.7E-05 52.4 4.6 24 128-151 27-50 (1096)
15 KOG0520 Uncharacterized conser 85.1 0.8 1.7E-05 53.7 3.7 64 132-195 834-930 (975)
16 KOG2128 Ras GTPase-activating 79.4 3.2 6.8E-05 50.4 5.8 62 135-199 539-612 (1401)
17 KOG0161 Myosin class II heavy 78.2 5.4 0.00012 50.4 7.5 45 155-199 775-819 (1930)
18 KOG0942 E3 ubiquitin protein l 77.3 1.4 2.9E-05 51.4 2.0 28 127-154 25-52 (1001)
19 KOG0162 Myosin class I heavy c 72.4 3.9 8.5E-05 46.9 4.0 37 133-172 698-735 (1106)
20 KOG0377 Protein serine/threoni 67.1 7.6 0.00016 42.4 4.6 42 128-169 14-56 (631)
21 COG5022 Myosin heavy chain [Cy 65.7 12 0.00026 45.9 6.3 49 144-192 735-784 (1463)
22 KOG0161 Myosin class II heavy 58.3 24 0.00052 45.0 7.3 40 131-170 773-816 (1930)
23 KOG0163 Myosin class VI heavy 49.3 22 0.00047 41.4 4.5 32 130-161 812-844 (1259)
24 PF08763 Ca_chan_IQ: Voltage g 47.2 23 0.0005 25.6 2.8 22 129-150 7-28 (35)
25 PF15157 IQ-like: IQ-like 33.2 37 0.0008 29.4 2.5 22 131-152 47-68 (97)
26 KOG4427 E3 ubiquitin protein l 23.7 1.1E+02 0.0024 36.0 4.8 23 155-177 32-54 (1096)
27 KOG0165 Microtubule-associated 21.4 2.4E+02 0.0051 33.4 6.8 24 130-153 942-965 (1023)
28 KOG1419 Voltage-gated K+ chann 21.4 45 0.00097 37.6 1.2 22 127-148 336-357 (654)
29 KOG0942 E3 ubiquitin protein l 20.9 1.3E+02 0.0028 35.9 4.7 26 152-177 28-53 (1001)
30 KOG0163 Myosin class VI heavy 20.3 1.6E+02 0.0035 34.7 5.2 22 155-176 815-836 (1259)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.58 E-value=1.6e-15 Score=131.69 Aligned_cols=77 Identities=51% Similarity=0.618 Sum_probs=55.0
Q ss_pred CCCccccccCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCcccccccccccccCCCCCCCCcc----ccCCCccccCcc
Q 011616 365 NSPQFYSASSRGGSSKRSPFTPTKSYSSQSCLSGYSDHPNYMAYTESSRAKVRSLSAPKQRPQY----ERSSSAKRYSIH 440 (481)
Q Consensus 365 ~sP~~~s~ss~~~~~rr~~~t~~~~~~~~~~~~~~~~~P~YMa~TeS~kAK~RsqsaPkqrp~~----e~~~s~~r~S~~ 440 (481)
|||++++..+..... ....++.+.++.+..+. .+|||||+|||||||+|+||+|||||+. ++...+||+||+
T Consensus 1 nsPr~~s~~~~~~~~-~~~~s~~~~~~~~~s~~---~~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~ 76 (102)
T PF13178_consen 1 NSPRLRSASSRSSSS-PSRSSPQKSSCRRSSFG---SLPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLP 76 (102)
T ss_pred CCCCccCcccCCCCC-cccCCCcccccccCcCC---CCCCccchhhhhhhhhhccCCcccCCCccccccccccccccccC
Confidence 578876655443321 22334445555554444 2999999999999999999999999984 567788999999
Q ss_pred cCCCC
Q 011616 441 TFAES 445 (481)
Q Consensus 441 ~~~~~ 445 (481)
+....
T Consensus 77 ~~~~~ 81 (102)
T PF13178_consen 77 GSSNS 81 (102)
T ss_pred CCCCC
Confidence 86543
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.91 E-value=1.3e-05 Score=50.66 Aligned_cols=21 Identities=57% Similarity=0.822 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHH
Q 011616 131 EPAAIKIQSAFRGYLARRALR 151 (481)
Q Consensus 131 ~~AAi~IQsafRGylaRr~~~ 151 (481)
..|||+||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999885
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.84 E-value=3.8e-05 Score=87.61 Aligned_cols=66 Identities=32% Similarity=0.393 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011616 130 DEPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISES 199 (481)
Q Consensus 130 e~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e 199 (481)
...+++.||+.||||+.|+.|..+| +++.||+++||.++|+ ..+ ...|++.||..+|++..|+.|.
T Consensus 672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~---~~~-~~~aai~~q~~~r~~~~r~~y~ 738 (862)
T KOG0160|consen 672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR---ETE-REAAAIGIQKECRSYLNRRRYR 738 (862)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---hhH-HHHHHHHhHHHHHHHHHHHHHH
Confidence 3457888999999999999999999 8999999999999999 223 5678888999999999888775
No 4
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.42 E-value=0.00014 Score=48.08 Aligned_cols=22 Identities=55% Similarity=0.765 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHhhHHHHHHHH
Q 011616 130 DEPAAIKIQSAFRGYLARRALR 151 (481)
Q Consensus 130 e~~AAi~IQsafRGylaRr~~~ 151 (481)
++.+|++||+.||||++|+.|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999984
No 5
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.79 E-value=0.00081 Score=77.48 Aligned_cols=74 Identities=28% Similarity=0.300 Sum_probs=59.0
Q ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhc
Q 011616 127 GTLDEPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQ-------RMQALLRAQARARAGRAQISE 198 (481)
Q Consensus 127 ~~re~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~-------~~~a~v~iQs~~R~~~~R~~~ 198 (481)
......||..||.-||||+.|+.|..++ -+|+||+.+||+.+|++|..... -+.++-++|+-+|++..+...
T Consensus 806 ~r~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~ 885 (975)
T KOG0520|consen 806 DRSDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALF 885 (975)
T ss_pred cccchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccch
Confidence 3455678999999999999999999999 89999999999999999985443 334455567777777666655
Q ss_pred cc
Q 011616 199 SS 200 (481)
Q Consensus 199 e~ 200 (481)
|.
T Consensus 886 e~ 887 (975)
T KOG0520|consen 886 EE 887 (975)
T ss_pred hc
Confidence 53
No 6
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=96.62 E-value=0.0052 Score=70.68 Aligned_cols=66 Identities=29% Similarity=0.260 Sum_probs=55.4
Q ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011616 128 TLDEPAAIKIQSAFRGYLARRALRALRGLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQI 196 (481)
Q Consensus 128 ~re~~AAi~IQsafRGylaRr~~~~lr~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~ 196 (481)
.+...+++.||+.+||+++|+......+.|.||..+|+++.|++|... ..+++.+|+.+|+..+|.
T Consensus 693 ~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~---~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 693 LQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRAL---IPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Confidence 456789999999999999998333333899999999999999999443 468888999999999988
No 7
>PTZ00014 myosin-A; Provisional
Probab=96.54 E-value=0.0032 Score=72.53 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHH
Q 011616 133 AAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRT 172 (481)
Q Consensus 133 AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~ 172 (481)
.++.||++||||++|+.|..++ +++.||+.+||+++++..
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6788999999999999998888 889999999999988753
No 8
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.27 E-value=0.014 Score=65.51 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 011616 131 EPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISESSH 201 (481)
Q Consensus 131 ~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e~~ 201 (481)
-.-++.||++||||++|..|+.|| +++.|+ .+|.+.++- .+..||.++|+.+.++-+...
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks----------~v~el~~~~rg~k~~r~ygk~ 756 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKS----------YVQELQRRFRGAKQMRDYGKS 756 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHhhhhccccCCC
Confidence 346899999999999999999999 555556 555333322 334589999999988877643
No 9
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=95.23 E-value=0.024 Score=35.66 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhhHHHHHH
Q 011616 155 GLVRLQALVRGHIERKRT 172 (481)
Q Consensus 155 ~lv~LQalvRG~lvRrq~ 172 (481)
++|.||+.+||+++|+++
T Consensus 3 aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 678899999999999886
No 10
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=94.18 E-value=0.12 Score=61.92 Aligned_cols=73 Identities=23% Similarity=0.341 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHhhHHH----HHHHHHHH-HHHHHHHHhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhccc
Q 011616 130 DEPAAIKIQSAFRGYLA----RRALRALR-GLVRLQALVRGHIERKRTAEW----LQRMQALLRAQARARAGRAQISESS 200 (481)
Q Consensus 130 e~~AAi~IQsafRGyla----Rr~~~~lr-~lv~LQalvRG~lvRrq~~~~----l~~~~a~v~iQs~~R~~~~R~~~e~ 200 (481)
..-..+.||.++|||+. ...+...+ -+|.+|++.||+++|+.+... ..+|...++||+.+|+...|..+..
T Consensus 564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~ 643 (1401)
T KOG2128|consen 564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKL 643 (1401)
T ss_pred cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHH
Confidence 56678999999999994 22222222 799999999999999988744 4499999999999999999998875
Q ss_pred cc
Q 011616 201 HS 202 (481)
Q Consensus 201 ~~ 202 (481)
..
T Consensus 644 L~ 645 (1401)
T KOG2128|consen 644 LF 645 (1401)
T ss_pred Hh
Confidence 43
No 11
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=92.44 E-value=0.25 Score=59.50 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHH
Q 011616 130 DEPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTA 173 (481)
Q Consensus 130 e~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~~ 173 (481)
-...++.||++|||++.|++|.+-. .+..+|.+.+|.++|+.+.
T Consensus 744 ~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~ 788 (1463)
T COG5022 744 LDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVD 788 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc
Confidence 3568999999999999998876655 6666677777766665443
No 12
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=92.19 E-value=0.14 Score=33.69 Aligned_cols=19 Identities=42% Similarity=0.552 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhhHHHHHH
Q 011616 154 RGLVRLQALVRGHIERKRT 172 (481)
Q Consensus 154 r~lv~LQalvRG~lvRrq~ 172 (481)
+.++.||+.+||+++|+++
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3788999999999999987
No 13
>PTZ00014 myosin-A; Provisional
Probab=92.03 E-value=0.37 Score=56.03 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011616 155 GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQIS 197 (481)
Q Consensus 155 ~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~ 197 (481)
.++.||+.+||++.|+++.. ..++++.||+.+|++..++.
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~---~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRK---NIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999999844 46799999999999988754
No 14
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.87 E-value=0.77 Score=52.45 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=22.3
Q ss_pred cchhhHHHHHHHHHhhHHHHHHHH
Q 011616 128 TLDEPAAIKIQSAFRGYLARRALR 151 (481)
Q Consensus 128 ~re~~AAi~IQsafRGylaRr~~~ 151 (481)
.|++.||+.||..+|||++|+.++
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999987
No 15
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=85.11 E-value=0.8 Score=53.71 Aligned_cols=64 Identities=30% Similarity=0.358 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHH-H--H--------HHHHHHhhhhHHHHHHH----------------------HHHHH
Q 011616 132 PAAIKIQSAFRGYLARRALRALR-G--L--------VRLQALVRGHIERKRTA----------------------EWLQR 178 (481)
Q Consensus 132 ~AAi~IQsafRGylaRr~~~~lr-~--l--------v~LQalvRG~lvRrq~~----------------------~~l~~ 178 (481)
.=+|+||+++|||-.|+.|..|- + + -++|.-+||+..|..+. ...+-
T Consensus 834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~ 913 (975)
T KOG0520|consen 834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL 913 (975)
T ss_pred CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999998876 2 1 12488888887764221 12233
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011616 179 MQALLRAQARARAGRAQ 195 (481)
Q Consensus 179 ~~a~v~iQs~~R~~~~R 195 (481)
-+|+++||+.+|...++
T Consensus 914 ~~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 914 TRAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHHhcCHHHH
Confidence 47889999999888776
No 16
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=79.35 E-value=3.2 Score=50.40 Aligned_cols=62 Identities=26% Similarity=0.331 Sum_probs=49.0
Q ss_pred HHHHHHHhhHHHHHHHHHHH--------HHHHHHHHhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011616 135 IKIQSAFRGYLARRALRALR--------GLVRLQALVRGHIERKRTA----EWLQRMQALLRAQARARAGRAQISES 199 (481)
Q Consensus 135 i~IQsafRGylaRr~~~~lr--------~lv~LQalvRG~lvRrq~~----~~l~~~~a~v~iQs~~R~~~~R~~~e 199 (481)
.+||+..|||..|-.++... .++.+|+++||.++ +. .......-+|++|+..|+...|..+.
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~ 612 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKYS 612 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhHH
Confidence 34599999999998877655 47889999999996 22 22335567899999999999998875
No 17
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=78.15 E-value=5.4 Score=50.43 Aligned_cols=45 Identities=27% Similarity=0.226 Sum_probs=38.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011616 155 GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISES 199 (481)
Q Consensus 155 ~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e 199 (481)
-|+.+||.|||+++|+.+...+..+.|+..||.-+|.+...+.+.
T Consensus 775 ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~ 819 (1930)
T KOG0161|consen 775 IITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWP 819 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCH
Confidence 577789999999999999888889999999999999986655554
No 18
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.29 E-value=1.4 Score=51.38 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=23.4
Q ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHH
Q 011616 127 GTLDEPAAIKIQSAFRGYLARRALRALR 154 (481)
Q Consensus 127 ~~re~~AAi~IQsafRGylaRr~~~~lr 154 (481)
..++|.+||+||+.||||++|+..+.+-
T Consensus 25 ~rk~e~~av~vQs~~Rg~~~r~~~~~~~ 52 (1001)
T KOG0942|consen 25 ERKQEKNAVKVQSFWRGFRVRHNQKLLF 52 (1001)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999866543
No 19
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=72.41 E-value=3.9 Score=46.94 Aligned_cols=37 Identities=38% Similarity=0.609 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHH
Q 011616 133 AAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRT 172 (481)
Q Consensus 133 AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~ 172 (481)
=|.+||.+||.|++||.|..|| -..+ |+-|..-||.+
T Consensus 698 ~A~~IQkAWRrfv~rrky~k~ree~t~---ll~gKKeRRr~ 735 (1106)
T KOG0162|consen 698 MARRIQKAWRRFVARRKYEKMREEATK---LLLGKKERRRY 735 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHH
Confidence 5899999999999999999999 2222 33466666655
No 20
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=67.14 E-value=7.6 Score=42.43 Aligned_cols=42 Identities=33% Similarity=0.283 Sum_probs=30.5
Q ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hhhhHHH
Q 011616 128 TLDEPAAIKIQSAFRGYLARRALRALRGLVRLQAL-VRGHIER 169 (481)
Q Consensus 128 ~re~~AAi~IQsafRGylaRr~~~~lr~lv~LQal-vRG~lvR 169 (481)
.+--+||+.||.-||+|.||.+-+.--...-+|++ +-|.+-.
T Consensus 14 ~raikaAilIQkWYRr~~ARle~rrr~twqIFqslEYA~eQdQ 56 (631)
T KOG0377|consen 14 TRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSLEYAGEQDQ 56 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcCccch
Confidence 35578999999999999999886644466666776 3444433
No 21
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=65.74 E-value=12 Score=45.95 Aligned_cols=49 Identities=24% Similarity=0.223 Sum_probs=34.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011616 144 YLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAG 192 (481)
Q Consensus 144 ylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~ 192 (481)
.|.-.+-..|. .+++||+.+||.++||++..+++.++++..+|.-++.+
T Consensus 735 ~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~ 784 (1463)
T COG5022 735 ALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLR 784 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 34444444455 78999999999999999977777666665555544444
No 22
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=58.35 E-value=24 Score=45.02 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHhhhhHHHH
Q 011616 131 EPAAIKIQSAFRGYLARRALRALR----GLVRLQALVRGHIERK 170 (481)
Q Consensus 131 ~~AAi~IQsafRGylaRr~~~~lr----~lv~LQalvRG~lvRr 170 (481)
..-.+.+|+.+||||+|+.|.... +|..||.=+|-++..|
T Consensus 773 s~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr 816 (1930)
T KOG0161|consen 773 SQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345688999999999999987766 8889999888887665
No 23
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=49.31 E-value=22 Score=41.41 Aligned_cols=32 Identities=34% Similarity=0.534 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHH
Q 011616 130 DEPAAIKIQSAFRGYLARRALRALR-GLVRLQA 161 (481)
Q Consensus 130 e~~AAi~IQsafRGylaRr~~~~lr-~lv~LQa 161 (481)
+..+.+++|+..||||+|++++.-. ++.++-+
T Consensus 812 Rae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~ 844 (1259)
T KOG0163|consen 812 RAECVLKAQRIARGYLARKRHRPRIAGIRKINA 844 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Confidence 4667899999999999999976444 5444433
No 24
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=47.20 E-value=23 Score=25.63 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.1
Q ss_pred chhhHHHHHHHHHhhHHHHHHH
Q 011616 129 LDEPAAIKIQSAFRGYLARRAL 150 (481)
Q Consensus 129 re~~AAi~IQsafRGylaRr~~ 150 (481)
-.--||..||-.||-|.+|+.-
T Consensus 7 GK~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 7 GKFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999864
No 25
>PF15157 IQ-like: IQ-like
Probab=33.22 E-value=37 Score=29.38 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHH
Q 011616 131 EPAAIKIQSAFRGYLARRALRA 152 (481)
Q Consensus 131 ~~AAi~IQsafRGylaRr~~~~ 152 (481)
+.-+.+||.+||-||+|.....
T Consensus 47 eskvkiiqrawre~lq~qd~~~ 68 (97)
T PF15157_consen 47 ESKVKIIQRAWREYLQRQDPLE 68 (97)
T ss_pred hHHHHHHHHHHHHHHHhcCCcc
Confidence 5567889999999999976443
No 26
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.69 E-value=1.1e+02 Score=35.96 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Q 011616 155 GLVRLQALVRGHIERKRTAEWLQ 177 (481)
Q Consensus 155 ~lv~LQalvRG~lvRrq~~~~l~ 177 (481)
..+.||+.+||+++||++...++
T Consensus 32 aa~~iq~~lrsyl~Rkk~~~~I~ 54 (1096)
T KOG4427|consen 32 AALFIQRVLRSYLVRKKAQIEIQ 54 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999998874433
No 27
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=21.42 E-value=2.4e+02 Score=33.39 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHH
Q 011616 130 DEPAAIKIQSAFRGYLARRALRAL 153 (481)
Q Consensus 130 e~~AAi~IQsafRGylaRr~~~~l 153 (481)
...||+.||.+.|||++|+.|+.=
T Consensus 942 kKkaavviqkmirgfiarrkfqme 965 (1023)
T KOG0165|consen 942 KKKAAVVIQKMIRGFIARRKFQME 965 (1023)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999998743
No 28
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=21.42 E-value=45 Score=37.64 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=18.5
Q ss_pred CcchhhHHHHHHHHHhhHHHHH
Q 011616 127 GTLDEPAAIKIQSAFRGYLARR 148 (481)
Q Consensus 127 ~~re~~AAi~IQsafRGylaRr 148 (481)
+.+..-||-.||.+||-|.+=.
T Consensus 336 ~rrr~pAA~LIQc~WR~yaa~~ 357 (654)
T KOG1419|consen 336 NRRRNPAASLIQCAWRYYAAEN 357 (654)
T ss_pred HhhcchHHHHHHHHHHHHhccc
Confidence 3466779999999999999865
No 29
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.86 E-value=1.3e+02 Score=35.87 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 011616 152 ALRGLVRLQALVRGHIERKRTAEWLQ 177 (481)
Q Consensus 152 ~lr~lv~LQalvRG~lvRrq~~~~l~ 177 (481)
+.++.|.+|.++||+.+|++.....+
T Consensus 28 ~e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 28 QEKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHH
Confidence 34489999999999999998765544
No 30
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=20.31 E-value=1.6e+02 Score=34.72 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHH
Q 011616 155 GLVRLQALVRGHIERKRTAEWL 176 (481)
Q Consensus 155 ~lv~LQalvRG~lvRrq~~~~l 176 (481)
.++++|+.+||+|+|+++...+
T Consensus 815 ~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 815 CVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHHHHHHHHHHHHHhhhchHH
Confidence 5788999999999999886443
Done!