Query 011616
Match_columns 481
No_of_seqs 306 out of 711
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 11:49:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.1 6.7E-11 2.3E-15 90.9 6.9 53 129-182 3-56 (58)
2 1n2d_C IQ2 and IQ3 motifs from 98.9 3.3E-09 1.1E-13 78.3 6.6 42 131-172 3-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.8 1.1E-08 3.8E-13 118.0 9.9 68 131-199 768-836 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.8 9E-09 3.1E-13 118.8 8.5 71 128-199 813-884 (1080)
5 1n2d_C IQ2 and IQ3 motifs from 98.3 1.3E-06 4.3E-11 64.3 6.2 43 155-198 5-47 (48)
6 2l53_B CAM, voltage-gated sodi 97.7 1.4E-05 4.7E-10 54.6 2.5 24 128-151 3-26 (31)
7 2ix7_C Myosin-5A; contractIle 97.7 6.7E-05 2.3E-09 57.2 5.8 42 155-199 7-48 (58)
8 2kxw_B Sodium channel protein 97.7 1.9E-05 6.4E-10 52.3 2.2 22 128-149 3-24 (27)
9 1wdc_A Scallop myosin; calcium 97.5 0.00027 9.4E-09 55.0 7.1 43 155-197 8-50 (64)
10 2bl0_A Major plasmodial myosin 97.5 0.00018 6.3E-09 55.9 5.8 44 155-198 6-49 (63)
11 1wdc_A Scallop myosin; calcium 97.4 0.00022 7.6E-09 55.5 5.9 44 129-172 4-51 (64)
12 2bl0_A Major plasmodial myosin 97.3 0.00027 9.2E-09 55.0 5.4 42 131-172 4-49 (63)
13 1kk8_A Myosin heavy chain, str 96.9 0.00071 2.4E-08 76.5 6.1 41 132-172 780-824 (837)
14 1kk8_A Myosin heavy chain, str 96.0 0.012 4.1E-07 66.5 8.6 55 145-199 770-825 (837)
15 1i84_S Smooth muscle myosin he 96.0 0.0062 2.1E-07 71.1 6.0 40 132-171 793-836 (1184)
16 1i84_S Smooth muscle myosin he 94.7 0.053 1.8E-06 63.3 8.4 55 144-198 782-837 (1184)
17 3gn4_A Myosin-VI; unconvention 94.4 0.044 1.5E-06 49.8 5.2 35 129-163 43-78 (148)
18 4dck_A Sodium channel protein 90.7 0.15 5.1E-06 47.3 3.4 26 127-152 126-151 (168)
19 4anj_A Unconventional myosin-V 90.3 0.41 1.4E-05 55.4 7.4 42 130-172 774-816 (1052)
20 1w7j_A Myosin VA; motor protei 88.5 0.25 8.5E-06 55.6 3.7 24 131-154 768-791 (795)
21 3gn4_A Myosin-VI; unconvention 75.3 9 0.00031 34.7 7.8 23 155-177 47-69 (148)
22 4anj_A Unconventional myosin-V 47.8 24 0.00081 41.0 6.4 42 155-199 776-817 (1052)
23 1w7j_A Myosin VA; motor protei 44.3 22 0.00075 40.0 5.4 21 155-175 770-790 (795)
24 3jyw_P 60S ribosomal protein L 41.4 22 0.00074 33.1 4.0 7 78-84 149-155 (176)
25 3dvk_B Voltage-dependent R-typ 35.7 15 0.00052 23.3 1.3 19 130-148 5-23 (23)
26 2f3y_B Voltage-dependent L-typ 31.1 31 0.0011 22.4 2.2 19 133-151 4-22 (26)
27 2be6_D Voltage-dependent L-typ 28.1 45 0.0015 23.3 2.8 21 130-150 10-30 (37)
28 3bxl_B CAM, voltage-dependent 26.6 45 0.0015 21.7 2.4 19 131-149 2-20 (26)
29 1m46_B IQ4, IQ4 motif from MYO 22.0 1E+02 0.0036 19.5 3.4 21 153-173 3-23 (26)
30 3jyw_F 60S ribosomal protein L 21.0 39 0.0013 31.9 2.0 30 80-109 16-45 (213)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.14 E-value=6.7e-11 Score=90.95 Aligned_cols=53 Identities=26% Similarity=0.341 Sum_probs=46.5
Q ss_pred chhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 011616 129 LDEPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQAL 182 (481)
Q Consensus 129 re~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~ 182 (481)
+.+.|||.||+.||||++|+.|..++ ++|.||+.+||+++|+.+..... ..|+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~-~~aA 56 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRR-TKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCc
Confidence 56889999999999999999999999 99999999999999999965443 3443
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.88 E-value=3.3e-09 Score=78.34 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHhhhhHHHHHH
Q 011616 131 EPAAIKIQSAFRGYLARRALRALR---GLVRLQALVRGHIERKRT 172 (481)
Q Consensus 131 ~~AAi~IQsafRGylaRr~~~~lr---~lv~LQalvRG~lvRrq~ 172 (481)
..|||.||+.||||++|+.|..++ ++|.||+.+||+++|+.+
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 468999999999999999999887 899999999999999876
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.78 E-value=1.1e-08 Score=118.01 Aligned_cols=68 Identities=29% Similarity=0.423 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011616 131 EPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISES 199 (481)
Q Consensus 131 ~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e 199 (481)
..||++||+.||||++|+.|+.++ +++.||+.+||+++|+++. .++...|++.||+.||++++|+.+.
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~lr~~~AAi~IQs~~Rg~~~Rk~y~ 836 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYAT-FLRRTRAAIIIQKFQRMYVVRKRYQ 836 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHhhHHHHHHHH
Confidence 569999999999999999999999 9999999999999999985 4567789999999999999998775
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.76 E-value=9e-09 Score=118.83 Aligned_cols=71 Identities=28% Similarity=0.329 Sum_probs=60.7
Q ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011616 128 TLDEPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISES 199 (481)
Q Consensus 128 ~re~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e 199 (481)
+++..||++||+.||||++|+.|..++ ++|.||+.+||+++|+++.. ++...+++.||+.+|++.+|+.+.
T Consensus 813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~-lr~~~aav~IQ~~~Rg~l~R~~y~ 884 (1080)
T 2dfs_A 813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM-MLREHKSIIIQKHVRGWLARVHYH 884 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTHHHHHTT
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999 99999999999999998854 444567788888888888887764
No 5
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.3e-06 Score=64.34 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 011616 155 GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISE 198 (481)
Q Consensus 155 ~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~ 198 (481)
++|.||+.+||+++|+++.. ++...|++.||+.+||+.+|..+
T Consensus 5 a~i~iQ~~~Rg~l~R~~~~~-~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 5 AIKYLQNNIKGFIIRQRVND-EMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHhh
Confidence 78999999999999999954 45567999999999999998754
No 6
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.73 E-value=1.4e-05 Score=54.57 Aligned_cols=24 Identities=42% Similarity=0.553 Sum_probs=21.4
Q ss_pred cchhhHHHHHHHHHhhHHHHHHHH
Q 011616 128 TLDEPAAIKIQSAFRGYLARRALR 151 (481)
Q Consensus 128 ~re~~AAi~IQsafRGylaRr~~~ 151 (481)
.+||.+|++||.+||+||.|+.+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 579999999999999999998743
No 7
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=97.66 E-value=6.7e-05 Score=57.21 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011616 155 GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISES 199 (481)
Q Consensus 155 ~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e 199 (481)
++|.||+.+||+++|+.|... ..+++.||+.+||+.+|+.+.
T Consensus 7 aai~IQ~~~Rg~~~Rk~~~~~---r~aai~IQ~~~Rg~~aR~~~~ 48 (58)
T 2ix7_C 7 ACIRIQKTIRGWLLRKRYLCM---QRAAITVQRYVRGYQARCYAK 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999443 368999999999999998765
No 8
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.66 E-value=1.9e-05 Score=52.34 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=19.9
Q ss_pred cchhhHHHHHHHHHhhHHHHHH
Q 011616 128 TLDEPAAIKIQSAFRGYLARRA 149 (481)
Q Consensus 128 ~re~~AAi~IQsafRGylaRr~ 149 (481)
.+||.||++||.+||+||.|+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999864
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.48 E-value=0.00027 Score=55.02 Aligned_cols=43 Identities=21% Similarity=0.096 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011616 155 GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQIS 197 (481)
Q Consensus 155 ~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~ 197 (481)
.++.||+.+||+++|+.+...+...+|+..||..+|++..++.
T Consensus 8 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 8 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3455555555555555555555555555556666666555443
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.46 E-value=0.00018 Score=55.91 Aligned_cols=44 Identities=23% Similarity=0.070 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 011616 155 GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISE 198 (481)
Q Consensus 155 ~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~ 198 (481)
.++.||+.+||+++|+.+...+...+|+..||..+|++..++.+
T Consensus 6 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 6 IVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 35666666666666666666666666666677777777665543
No 11
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.42 E-value=0.00022 Score=55.54 Aligned_cols=44 Identities=30% Similarity=0.382 Sum_probs=38.6
Q ss_pred chhhHHHHHHHHHhhHHHHHHHHHH---H-HHHHHHHHhhhhHHHHHH
Q 011616 129 LDEPAAIKIQSAFRGYLARRALRAL---R-GLVRLQALVRGHIERKRT 172 (481)
Q Consensus 129 re~~AAi~IQsafRGylaRr~~~~l---r-~lv~LQalvRG~lvRrq~ 172 (481)
+-...++.||+..||||+|+.|..+ + ++..||.-+|+++.++..
T Consensus 4 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 4 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4456789999999999999999999 4 788999999999998754
No 12
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.33 E-value=0.00027 Score=54.96 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHH---H-HHHHHHHHhhhhHHHHHH
Q 011616 131 EPAAIKIQSAFRGYLARRALRAL---R-GLVRLQALVRGHIERKRT 172 (481)
Q Consensus 131 ~~AAi~IQsafRGylaRr~~~~l---r-~lv~LQalvRG~lvRrq~ 172 (481)
...++.||+..|||++|+.|..+ + ++..||.-+|+++.++..
T Consensus 4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45689999999999999999999 4 777999999999998754
No 13
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.95 E-value=0.00071 Score=76.46 Aligned_cols=41 Identities=32% Similarity=0.459 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHH---H-HHHHHHHHhhhhHHHHHH
Q 011616 132 PAAIKIQSAFRGYLARRALRAL---R-GLVRLQALVRGHIERKRT 172 (481)
Q Consensus 132 ~AAi~IQsafRGylaRr~~~~l---r-~lv~LQalvRG~lvRrq~ 172 (481)
.+|+.||+.|||||+|+.|+.+ | +++.||..+||+++||..
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 4677888888888888888777 3 677777777777777754
No 14
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.04 E-value=0.012 Score=66.52 Aligned_cols=55 Identities=20% Similarity=0.061 Sum_probs=44.7
Q ss_pred HHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011616 145 LARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISES 199 (481)
Q Consensus 145 laRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e 199 (481)
|....-..|. .++.||+.+||++.|+++...+....|++.||+.+|++..++.+.
T Consensus 770 LE~~r~~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 770 LEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 3333333344 688999999999999999888777899999999999999987764
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.96 E-value=0.0062 Score=71.07 Aligned_cols=40 Identities=30% Similarity=0.440 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHhhhhHHHHH
Q 011616 132 PAAIKIQSAFRGYLARRALRALR----GLVRLQALVRGHIERKR 171 (481)
Q Consensus 132 ~AAi~IQsafRGylaRr~~~~lr----~lv~LQalvRG~lvRrq 171 (481)
.+++.||+.||||++|+.|..++ +++.||+.+||++.||.
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999885 89999999999999875
No 16
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.73 E-value=0.053 Score=63.26 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=45.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 011616 144 YLARRALRALR-GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISE 198 (481)
Q Consensus 144 ylaRr~~~~lr-~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~ 198 (481)
+|....-..|. .++.||+.+||++.|+.+...+....|++.||+.+|++..++.+
T Consensus 782 ~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 782 HLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444 68899999999999999988888889999999999999988765
No 17
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=94.40 E-value=0.044 Score=49.83 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=26.8
Q ss_pred chhhHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHh
Q 011616 129 LDEPAAIKIQSAFRGYLARRALRAL-RGLVRLQALV 163 (481)
Q Consensus 129 re~~AAi~IQsafRGylaRr~~~~l-r~lv~LQalv 163 (481)
=+..|+|+||+.+||||+|+.++-= .|++++.+|.
T Consensus 43 yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 43 YRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3577899999999999999988632 3777766653
No 18
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=90.71 E-value=0.15 Score=47.27 Aligned_cols=26 Identities=38% Similarity=0.506 Sum_probs=22.3
Q ss_pred CcchhhHHHHHHHHHhhHHHHHHHHH
Q 011616 127 GTLDEPAAIKIQSAFRGYLARRALRA 152 (481)
Q Consensus 127 ~~re~~AAi~IQsafRGylaRr~~~~ 152 (481)
..+|+.||+.||.+||.|+.|+.+..
T Consensus 126 ~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 126 RKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 35789999999999999999887654
No 19
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=90.32 E-value=0.41 Score=55.45 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhHHHHHH
Q 011616 130 DEPAAIKIQSAFRGYLARRALRALR-GLVRLQALVRGHIERKRT 172 (481)
Q Consensus 130 e~~AAi~IQsafRGylaRr~~~~lr-~lv~LQalvRG~lvRrq~ 172 (481)
...+|+.||. +||||+|+.|+.++ +.+.+|.+.|+...|+..
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567777775 79999999999999 888899888887766644
No 20
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=88.46 E-value=0.25 Score=55.64 Aligned_cols=24 Identities=38% Similarity=0.689 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHH
Q 011616 131 EPAAIKIQSAFRGYLARRALRALR 154 (481)
Q Consensus 131 ~~AAi~IQsafRGylaRr~~~~lr 154 (481)
..+|+.||++|||||+|+.|+.+|
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r 791 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMR 791 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999998887
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=75.29 E-value=9 Score=34.70 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Q 011616 155 GLVRLQALVRGHIERKRTAEWLQ 177 (481)
Q Consensus 155 ~lv~LQalvRG~lvRrq~~~~l~ 177 (481)
.+|.||..+||+|+|+++..-+.
T Consensus 47 ~~i~iQktvR~~L~rkkhkPRi~ 69 (148)
T 3gn4_A 47 ACIKMQKTIRMWLCKRRHKPRID 69 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH
Confidence 57888999999999998854433
No 22
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=47.80 E-value=24 Score=41.03 Aligned_cols=42 Identities=12% Similarity=-0.065 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011616 155 GLVRLQALVRGHIERKRTAEWLQRMQALLRAQARARAGRAQISES 199 (481)
Q Consensus 155 ~lv~LQalvRG~lvRrq~~~~l~~~~a~v~iQs~~R~~~~R~~~e 199 (481)
.++.||..+||+++|+++..+ ..+++.||...|.++.|....
T Consensus 776 ~~~~~iq~~r~~l~r~~~~k~---~~~a~~i~~~~r~~~~r~~~~ 817 (1052)
T 4anj_A 776 HLAELVKRVNHWLICSRWKKV---QWCSLSVIKLKNKIKYRAEAV 817 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcc
Confidence 556666678999999999544 346666777666666655433
No 23
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=44.32 E-value=22 Score=40.01 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 011616 155 GLVRLQALVRGHIERKRTAEW 175 (481)
Q Consensus 155 ~lv~LQalvRG~lvRrq~~~~ 175 (481)
.++.||+.+||++.|+++..+
T Consensus 770 ~~~~iQ~~~Rg~l~R~~~~~~ 790 (795)
T 1w7j_A 770 ACIRIQKTIRGWLMRKKYMRM 790 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888543
No 24
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=41.43 E-value=22 Score=33.06 Aligned_cols=7 Identities=43% Similarity=0.254 Sum_probs=2.7
Q ss_pred hhhHHHH
Q 011616 78 KHAIAVA 84 (481)
Q Consensus 78 ~~a~~va 84 (481)
-++.+.|
T Consensus 149 ~~~~~~~ 155 (176)
T 3jyw_P 149 AAAAAAA 155 (176)
T ss_dssp HHHHHHG
T ss_pred HHHHHHH
Confidence 3444333
No 25
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=35.65 E-value=15 Score=23.26 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHhhHHHHH...
Q 011616 130 DEPAAIKIQSAFRGYLARR... 148 (481)
Q Consensus 130 e~~AAi~IQsafRGylaRr... 148 (481)
.--|+..||-.||-+..|+
T Consensus 5 KiYA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHHHhccC...
Confidence 5679999999999988763
No 26
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=31.05 E-value=31 Score=22.36 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 011616 133 AAIKIQSAFRGYLARRALR 151 (481)
Q Consensus 133 AAi~IQsafRGylaRr~~~ 151 (481)
|-..||-.||.+..|++-.
T Consensus 4 at~LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQX 22 (26)
T ss_pred hhhhHHHHHHHHHHhHHhh
Confidence 5678999999999998753
No 27
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=28.07 E-value=45 Score=23.34 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHhhHHHHHHH
Q 011616 130 DEPAAIKIQSAFRGYLARRAL 150 (481)
Q Consensus 130 e~~AAi~IQsafRGylaRr~~ 150 (481)
.--|-..||-.||-|..|++-
T Consensus 10 KfYatfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 10 KFYATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999875
No 28
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=26.61 E-value=45 Score=21.66 Aligned_cols=19 Identities=16% Similarity=0.168 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHhhHHHHHH
Q 011616 131 EPAAIKIQSAFRGYLARRA 149 (481)
Q Consensus 131 ~~AAi~IQsafRGylaRr~ 149 (481)
.-||..||-.||-+..||.
T Consensus 2 vYAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 2 IYAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hhHHHHHHHHHHHHHhhhh
Confidence 3589999999999998886
No 29
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=21.97 E-value=1e+02 Score=19.48 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHH
Q 011616 153 LRGLVRLQALVRGHIERKRTA 173 (481)
Q Consensus 153 lr~lv~LQalvRG~lvRrq~~ 173 (481)
||.|..||.-+|-.+-.+|+.
T Consensus 3 lrtitnlqkkirkelkqrqlk 23 (26)
T 1m46_B 3 LRTITNLQKKIRKELKQRQLK 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888888777763
No 30
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F
Probab=21.03 E-value=39 Score=31.88 Aligned_cols=30 Identities=57% Similarity=0.448 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 011616 80 AIAVAAATAAVAEAAVAAAHAAAAVVRLTS 109 (481)
Q Consensus 80 a~~va~ata~~a~aa~~~a~aa~~vvr~~~ 109 (481)
+.+.|+|.||+|.||.++|.+++.+.....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 45 (213)
T 3jyw_F 16 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 45 (213)
T ss_dssp HHTTSSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Done!