Query 011618
Match_columns 481
No_of_seqs 173 out of 1325
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 03:21:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 1E-175 2E-180 1364.3 33.3 428 25-476 24-453 (582)
2 PRK13529 malate dehydrogenase; 100.0 2E-173 4E-178 1372.1 38.7 435 23-475 8-445 (563)
3 PTZ00317 NADP-dependent malic 100.0 3E-172 6E-177 1361.8 37.1 431 26-475 13-444 (559)
4 PLN03129 NADP-dependent malic 100.0 6E-170 1E-174 1348.8 37.9 425 29-476 39-465 (581)
5 COG0281 SfcA Malic enzyme [Ene 100.0 2.8E-91 6E-96 719.6 26.2 320 65-472 1-330 (432)
6 PRK12862 malic enzyme; Reviewe 100.0 2E-86 4.4E-91 731.2 25.7 282 113-472 30-321 (763)
7 PRK07232 bifunctional malic en 100.0 2.1E-86 4.5E-91 728.5 24.8 282 113-472 22-313 (752)
8 PRK12861 malic enzyme; Reviewe 100.0 4.5E-85 9.8E-90 717.8 25.5 283 113-474 26-312 (764)
9 PF00390 malic: Malic enzyme, 100.0 1.1E-84 2.4E-89 611.3 4.7 181 106-286 1-182 (182)
10 PF03949 Malic_M: Malic enzyme 100.0 2E-61 4.4E-66 475.0 14.7 170 296-476 1-170 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 1.2E-59 2.7E-64 462.0 17.7 168 296-477 1-171 (254)
12 cd05312 NAD_bind_1_malic_enz N 100.0 4.9E-59 1.1E-63 463.1 17.7 169 296-476 1-169 (279)
13 cd05311 NAD_bind_2_malic_enz N 100.0 1.7E-30 3.8E-35 251.0 15.1 149 296-473 1-150 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 2.3E-08 5E-13 82.9 10.3 86 298-444 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.9 0.00037 8E-09 74.5 15.4 161 242-448 105-303 (425)
16 TIGR00936 ahcY adenosylhomocys 97.4 0.0036 7.7E-08 66.7 14.3 129 288-460 156-294 (406)
17 cd00401 AdoHcyase S-adenosyl-L 97.2 0.0021 4.5E-08 68.6 10.1 130 288-461 163-302 (413)
18 cd05211 NAD_bind_Glu_Leu_Phe_V 97.1 0.0053 1.1E-07 60.0 11.3 134 299-460 2-139 (217)
19 TIGR01035 hemA glutamyl-tRNA r 97.1 0.0041 8.9E-08 65.9 11.0 122 297-448 158-281 (417)
20 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.004 8.8E-08 63.3 10.5 138 276-448 139-277 (311)
21 PRK14982 acyl-ACP reductase; P 96.9 0.0032 7E-08 65.7 8.7 114 299-448 134-250 (340)
22 PLN02494 adenosylhomocysteinas 96.8 0.0083 1.8E-07 65.2 11.1 125 294-462 231-355 (477)
23 PRK00045 hemA glutamyl-tRNA re 96.8 0.0069 1.5E-07 64.2 10.0 122 298-448 161-284 (423)
24 PTZ00075 Adenosylhomocysteinas 96.8 0.044 9.6E-07 59.7 15.9 123 289-448 216-345 (476)
25 PF01488 Shikimate_DH: Shikima 96.7 0.00081 1.8E-08 60.3 2.3 108 316-448 5-113 (135)
26 cd01080 NAD_bind_m-THF_DH_Cycl 96.6 0.014 3.1E-07 55.0 9.3 79 320-448 41-120 (168)
27 PLN02477 glutamate dehydrogena 96.5 0.13 2.7E-06 55.3 17.1 192 243-461 112-324 (410)
28 PRK14192 bifunctional 5,10-met 96.4 0.015 3.3E-07 59.1 9.0 110 298-462 137-251 (283)
29 PF00670 AdoHcyase_NAD: S-aden 96.0 0.11 2.3E-06 49.4 11.9 119 297-459 3-121 (162)
30 PRK00676 hemA glutamyl-tRNA re 96.0 0.016 3.4E-07 60.6 6.7 126 276-448 136-265 (338)
31 COG0373 HemA Glutamyl-tRNA red 95.9 0.02 4.4E-07 61.3 7.4 138 276-448 139-278 (414)
32 PTZ00079 NADP-specific glutama 95.9 0.35 7.6E-06 52.6 16.8 179 243-446 143-355 (454)
33 PRK13940 glutamyl-tRNA reducta 95.9 0.011 2.4E-07 63.0 5.3 134 276-448 142-277 (414)
34 PLN00203 glutamyl-tRNA reducta 95.9 0.026 5.6E-07 62.0 8.2 123 301-448 246-373 (519)
35 PRK14030 glutamate dehydrogena 95.8 0.38 8.3E-06 52.2 16.7 184 243-446 134-346 (445)
36 cd01076 NAD_bind_1_Glu_DH NAD( 95.7 0.089 1.9E-06 51.8 10.6 130 297-448 8-140 (227)
37 PRK14031 glutamate dehydrogena 95.7 0.34 7.3E-06 52.6 15.5 185 243-446 134-345 (444)
38 PRK08306 dipicolinate synthase 95.6 0.053 1.1E-06 55.2 8.9 108 304-446 136-243 (296)
39 TIGR00518 alaDH alanine dehydr 95.5 0.043 9.4E-07 57.5 8.0 237 156-451 19-275 (370)
40 PRK14175 bifunctional 5,10-met 95.5 0.036 7.9E-07 56.7 7.1 141 253-447 76-233 (286)
41 PLN00106 malate dehydrogenase 95.5 0.055 1.2E-06 56.1 8.4 120 305-448 4-139 (323)
42 cd01075 NAD_bind_Leu_Phe_Val_D 95.4 0.11 2.3E-06 50.0 9.5 110 299-445 5-116 (200)
43 TIGR02853 spore_dpaA dipicolin 95.4 0.082 1.8E-06 53.7 9.1 127 296-461 127-253 (287)
44 PRK09414 glutamate dehydrogena 95.3 0.5 1.1E-05 51.3 15.4 183 243-445 138-345 (445)
45 cd05313 NAD_bind_2_Glu_DH NAD( 95.0 0.24 5.1E-06 50.1 11.0 131 298-448 16-159 (254)
46 PRK08328 hypothetical protein; 94.7 0.034 7.4E-07 54.5 4.2 55 281-367 6-60 (231)
47 cd05197 GH4_glycoside_hydrolas 94.3 0.05 1.1E-06 58.3 4.7 120 324-463 1-157 (425)
48 PTZ00117 malate dehydrogenase; 94.1 0.13 2.7E-06 52.9 6.9 119 322-464 4-137 (319)
49 PTZ00082 L-lactate dehydrogena 94.0 0.12 2.5E-06 53.4 6.4 119 322-464 5-143 (321)
50 cd05212 NAD_bind_m-THF_DH_Cycl 93.9 0.48 1E-05 43.7 9.7 82 302-429 10-92 (140)
51 cd01078 NAD_bind_H4MPT_DH NADP 93.9 0.14 3.1E-06 48.0 6.4 123 299-448 7-133 (194)
52 PRK12549 shikimate 5-dehydroge 93.9 0.093 2E-06 53.1 5.5 90 305-418 112-202 (284)
53 TIGR02354 thiF_fam2 thiamine b 93.9 0.086 1.9E-06 50.8 4.9 35 322-367 20-54 (200)
54 PRK14191 bifunctional 5,10-met 93.8 0.17 3.7E-06 51.9 7.2 139 253-444 75-229 (285)
55 PTZ00325 malate dehydrogenase; 93.7 0.21 4.5E-06 51.8 7.7 109 321-448 6-129 (321)
56 cd05296 GH4_P_beta_glucosidase 93.4 0.098 2.1E-06 56.0 4.8 122 324-464 1-159 (419)
57 PLN02928 oxidoreductase family 93.3 0.89 1.9E-05 47.5 11.6 130 297-448 120-266 (347)
58 PRK09424 pntA NAD(P) transhydr 93.3 0.27 5.9E-06 54.1 8.0 110 323-451 165-293 (509)
59 PRK12749 quinate/shikimate deh 93.0 0.16 3.5E-06 51.7 5.5 49 305-367 109-157 (288)
60 PF00899 ThiF: ThiF family; I 93.0 0.12 2.6E-06 45.9 4.0 36 323-369 2-37 (135)
61 PRK12475 thiamine/molybdopteri 92.8 0.17 3.7E-06 52.6 5.4 107 316-442 20-147 (338)
62 PF00208 ELFV_dehydrog: Glutam 92.8 0.22 4.9E-06 49.6 6.1 136 295-448 6-151 (244)
63 PF00056 Ldh_1_N: lactate/mala 92.8 0.044 9.5E-07 49.8 1.0 116 324-463 1-132 (141)
64 cd00650 LDH_MDH_like NAD-depen 92.8 0.13 2.9E-06 50.8 4.4 117 326-463 1-133 (263)
65 cd05291 HicDH_like L-2-hydroxy 92.7 0.25 5.4E-06 50.1 6.4 115 325-463 2-131 (306)
66 PF01262 AlaDh_PNT_C: Alanine 92.6 0.075 1.6E-06 49.3 2.3 95 321-431 18-130 (168)
67 PRK08762 molybdopterin biosynt 92.6 0.16 3.5E-06 53.1 5.0 106 317-442 132-256 (376)
68 PRK14027 quinate/shikimate deh 92.6 0.19 4.1E-06 51.1 5.2 57 289-367 104-160 (283)
69 cd01065 NAD_bind_Shikimate_DH 92.5 0.25 5.4E-06 43.9 5.4 113 305-448 4-121 (155)
70 PRK10792 bifunctional 5,10-met 92.5 0.34 7.3E-06 49.8 7.0 92 300-444 139-231 (285)
71 PRK14176 bifunctional 5,10-met 92.4 0.38 8.3E-06 49.4 7.2 83 300-428 144-227 (287)
72 TIGR01809 Shik-DH-AROM shikima 92.4 0.22 4.7E-06 50.3 5.4 108 289-428 100-210 (282)
73 PF02826 2-Hacid_dh_C: D-isome 92.3 0.59 1.3E-05 43.7 7.9 108 319-465 32-143 (178)
74 PF03807 F420_oxidored: NADP o 92.2 0.27 5.9E-06 40.6 4.9 95 325-446 1-96 (96)
75 PF01210 NAD_Gly3P_dh_N: NAD-d 92.2 0.07 1.5E-06 48.9 1.6 88 325-432 1-91 (157)
76 PRK05086 malate dehydrogenase; 92.2 0.43 9.4E-06 49.0 7.4 106 324-448 1-122 (312)
77 PRK00066 ldh L-lactate dehydro 92.1 0.54 1.2E-05 48.3 7.9 115 324-463 7-136 (315)
78 PRK00257 erythronate-4-phospha 92.1 0.99 2.2E-05 48.0 10.1 53 299-366 95-147 (381)
79 TIGR02356 adenyl_thiF thiazole 92.1 0.34 7.4E-06 46.5 6.1 107 317-443 18-143 (202)
80 PRK14194 bifunctional 5,10-met 92.0 0.44 9.4E-06 49.3 7.1 94 300-446 139-234 (301)
81 TIGR01763 MalateDH_bact malate 92.0 0.2 4.4E-06 51.1 4.7 115 324-464 2-133 (305)
82 PRK12548 shikimate 5-dehydroge 91.7 0.29 6.3E-06 49.5 5.5 57 289-367 103-159 (289)
83 cd01079 NAD_bind_m-THF_DH NAD 91.7 0.64 1.4E-05 45.6 7.5 103 302-429 35-148 (197)
84 PRK14189 bifunctional 5,10-met 91.6 0.48 1E-05 48.7 6.9 94 300-446 138-233 (285)
85 PRK02842 light-independent pro 91.3 1.1 2.4E-05 47.8 9.5 187 153-417 176-369 (427)
86 cd00757 ThiF_MoeB_HesA_family 91.3 0.43 9.4E-06 46.4 5.9 106 317-442 18-142 (228)
87 TIGR02355 moeB molybdopterin s 91.2 0.42 9.1E-06 47.4 5.8 109 317-444 21-147 (240)
88 PRK00258 aroE shikimate 5-dehy 91.1 0.4 8.6E-06 48.0 5.6 49 305-367 107-156 (278)
89 COG0169 AroE Shikimate 5-dehyd 91.1 0.36 7.9E-06 49.4 5.4 49 306-366 110-158 (283)
90 PRK08293 3-hydroxybutyryl-CoA 91.0 0.3 6.5E-06 48.8 4.7 32 324-367 4-35 (287)
91 PRK07066 3-hydroxybutyryl-CoA 91.0 0.24 5.2E-06 51.4 4.0 61 401-464 103-169 (321)
92 PRK12921 2-dehydropantoate 2-r 90.9 0.81 1.8E-05 45.3 7.6 103 325-448 2-106 (305)
93 PRK06223 malate dehydrogenase; 90.9 0.66 1.4E-05 46.7 7.0 114 324-463 3-133 (307)
94 PRK14851 hypothetical protein; 90.8 0.92 2E-05 51.7 8.8 125 316-465 39-194 (679)
95 TIGR00872 gnd_rel 6-phosphoglu 90.6 1.3 2.7E-05 44.9 8.7 95 325-448 2-97 (298)
96 PF02882 THF_DHG_CYH_C: Tetrah 90.6 1.1 2.3E-05 42.4 7.7 83 301-429 17-100 (160)
97 TIGR00561 pntA NAD(P) transhyd 90.4 0.76 1.6E-05 50.8 7.4 141 294-451 133-292 (511)
98 PRK14190 bifunctional 5,10-met 90.2 0.8 1.7E-05 47.1 7.0 83 300-428 138-221 (284)
99 PRK14183 bifunctional 5,10-met 90.2 0.8 1.7E-05 47.0 7.0 84 300-429 137-221 (281)
100 PRK14178 bifunctional 5,10-met 90.1 0.64 1.4E-05 47.7 6.2 92 300-444 132-224 (279)
101 PRK08605 D-lactate dehydrogena 90.0 1.8 3.9E-05 44.8 9.4 114 297-445 104-237 (332)
102 PRK15438 erythronate-4-phospha 89.9 2.2 4.8E-05 45.4 10.2 54 298-366 94-147 (378)
103 PRK08644 thiamine biosynthesis 89.7 0.29 6.4E-06 47.5 3.2 35 322-367 27-61 (212)
104 PRK06129 3-hydroxyacyl-CoA deh 89.6 0.94 2E-05 45.8 6.9 32 324-367 3-34 (308)
105 cd05298 GH4_GlvA_pagL_like Gly 89.6 0.39 8.4E-06 51.9 4.3 110 324-448 1-147 (437)
106 PRK08374 homoserine dehydrogen 89.6 2.2 4.9E-05 44.3 9.8 109 324-441 3-120 (336)
107 cd00704 MDH Malate dehydrogena 89.4 1.5 3.2E-05 45.5 8.3 121 325-464 2-141 (323)
108 KOG0029 Amine oxidase [Seconda 89.4 0.16 3.5E-06 55.6 1.3 34 324-360 16-49 (501)
109 PRK14179 bifunctional 5,10-met 89.3 0.99 2.2E-05 46.4 6.8 139 253-444 76-230 (284)
110 PRK05442 malate dehydrogenase; 89.2 1.4 3.1E-05 45.7 8.0 123 324-465 5-146 (326)
111 PRK12550 shikimate 5-dehydroge 89.2 0.66 1.4E-05 47.0 5.4 56 289-367 100-155 (272)
112 cd01336 MDH_cytoplasmic_cytoso 89.1 2.4 5.2E-05 43.9 9.5 123 324-465 3-144 (325)
113 PRK14174 bifunctional 5,10-met 88.7 1.5 3.3E-05 45.2 7.7 95 301-444 140-235 (295)
114 PRK00094 gpsA NAD(P)H-dependen 88.6 0.96 2.1E-05 45.2 6.1 101 325-448 3-109 (325)
115 cd05294 LDH-like_MDH_nadp A la 88.6 1.5 3.2E-05 44.9 7.6 117 325-464 2-136 (309)
116 COG1486 CelF Alpha-galactosida 88.6 0.37 7.9E-06 52.3 3.3 124 322-464 2-161 (442)
117 PRK14619 NAD(P)H-dependent gly 88.5 2.7 5.9E-05 42.5 9.3 32 324-367 5-36 (308)
118 PRK08410 2-hydroxyacid dehydro 88.5 4.8 0.0001 41.3 11.2 145 262-445 60-233 (311)
119 PF02056 Glyco_hydro_4: Family 88.4 0.06 1.3E-06 51.9 -2.4 110 325-448 1-148 (183)
120 PRK15076 alpha-galactosidase; 88.4 0.69 1.5E-05 49.7 5.3 112 324-448 2-151 (431)
121 PLN03139 formate dehydrogenase 88.4 6.4 0.00014 42.1 12.3 166 261-465 117-307 (386)
122 PRK12480 D-lactate dehydrogena 88.3 4.6 9.9E-05 42.0 11.0 58 298-367 105-178 (330)
123 KOG0685 Flavin-containing amin 88.3 0.19 4E-06 55.0 0.8 23 323-345 21-43 (498)
124 cd01485 E1-1_like Ubiquitin ac 88.0 0.45 9.7E-06 45.7 3.2 35 323-368 19-53 (198)
125 TIGR02992 ectoine_eutC ectoine 87.9 1.7 3.7E-05 44.7 7.5 105 324-457 130-236 (326)
126 PRK14184 bifunctional 5,10-met 87.9 1.3 2.8E-05 45.7 6.5 87 300-428 137-224 (286)
127 cd01337 MDH_glyoxysomal_mitoch 87.9 2 4.3E-05 44.5 8.0 105 325-448 2-121 (310)
128 PRK09260 3-hydroxybutyryl-CoA 87.8 1 2.3E-05 44.9 5.8 32 324-367 2-33 (288)
129 PRK14177 bifunctional 5,10-met 87.8 1.6 3.6E-05 44.9 7.2 83 301-429 140-223 (284)
130 PRK14172 bifunctional 5,10-met 87.8 1.6 3.6E-05 44.7 7.2 131 253-429 76-222 (278)
131 cd05297 GH4_alpha_glucosidase_ 87.7 0.73 1.6E-05 49.2 4.9 122 325-464 2-160 (423)
132 PRK14170 bifunctional 5,10-met 87.4 1.7 3.7E-05 44.7 7.1 131 253-429 75-221 (284)
133 PRK07688 thiamine/molybdopteri 87.3 1 2.2E-05 46.9 5.6 109 317-444 21-149 (339)
134 PRK05690 molybdopterin biosynt 87.3 0.56 1.2E-05 46.5 3.5 109 317-445 29-156 (245)
135 PLN02602 lactate dehydrogenase 87.3 1.3 2.8E-05 46.5 6.3 115 324-463 38-168 (350)
136 PRK06436 glycerate dehydrogena 87.1 5.2 0.00011 41.2 10.5 37 319-367 118-154 (303)
137 PRK09599 6-phosphogluconate de 87.1 2.2 4.7E-05 43.1 7.6 96 325-448 2-98 (301)
138 PRK08223 hypothetical protein; 87.1 0.58 1.3E-05 48.1 3.6 128 279-444 4-152 (287)
139 PRK12439 NAD(P)H-dependent gly 86.9 0.88 1.9E-05 47.0 4.8 103 324-448 8-115 (341)
140 PRK14188 bifunctional 5,10-met 86.8 1.6 3.4E-05 45.1 6.4 92 300-444 138-230 (296)
141 TIGR01772 MDH_euk_gproteo mala 86.7 2.4 5.1E-05 43.9 7.7 118 325-464 1-135 (312)
142 PF07992 Pyr_redox_2: Pyridine 86.6 0.65 1.4E-05 42.4 3.3 32 325-368 1-32 (201)
143 cd01483 E1_enzyme_family Super 86.6 0.62 1.4E-05 41.6 3.1 32 325-367 1-32 (143)
144 PF01113 DapB_N: Dihydrodipico 86.6 4.3 9.4E-05 36.0 8.4 74 325-417 2-76 (124)
145 cd00755 YgdL_like Family of ac 86.6 0.6 1.3E-05 46.3 3.2 36 321-367 9-44 (231)
146 PRK06153 hypothetical protein; 86.5 0.73 1.6E-05 49.4 4.0 38 316-367 172-209 (393)
147 PRK14166 bifunctional 5,10-met 86.5 2.1 4.5E-05 44.1 7.1 131 253-429 74-221 (282)
148 PRK07574 formate dehydrogenase 86.4 3.6 7.9E-05 43.9 9.2 152 262-447 111-287 (385)
149 PRK05600 thiamine biosynthesis 86.4 0.53 1.2E-05 49.6 2.9 108 316-442 37-162 (370)
150 TIGR01381 E1_like_apg7 E1-like 86.4 0.55 1.2E-05 53.2 3.2 39 320-369 335-373 (664)
151 COG0039 Mdh Malate/lactate deh 86.4 1.9 4E-05 45.0 6.8 117 324-463 1-132 (313)
152 PRK06522 2-dehydropantoate 2-r 86.4 1.5 3.2E-05 43.3 5.8 102 325-448 2-104 (304)
153 PRK14187 bifunctional 5,10-met 86.3 2.2 4.8E-05 44.1 7.2 84 300-429 140-224 (294)
154 cd01492 Aos1_SUMO Ubiquitin ac 86.2 0.58 1.3E-05 45.0 2.8 39 316-368 17-55 (197)
155 TIGR03140 AhpF alkyl hydropero 86.2 1.3 2.9E-05 48.0 5.9 86 254-344 137-233 (515)
156 cd01487 E1_ThiF_like E1_ThiF_l 86.1 0.7 1.5E-05 43.5 3.3 101 325-442 1-120 (174)
157 cd01979 Pchlide_reductase_N Pc 86.1 4.6 0.0001 42.6 9.7 130 149-345 162-298 (396)
158 PRK08229 2-dehydropantoate 2-r 86.1 3 6.5E-05 42.3 8.0 104 324-448 3-111 (341)
159 PRK15469 ghrA bifunctional gly 86.0 7.8 0.00017 40.0 11.1 37 319-367 132-168 (312)
160 PRK13243 glyoxylate reductase; 85.9 7.1 0.00015 40.5 10.8 147 263-445 65-241 (333)
161 PRK07680 late competence prote 85.7 2.3 4.9E-05 42.2 6.8 98 325-448 2-100 (273)
162 COG0111 SerA Phosphoglycerate 85.6 6 0.00013 41.2 10.1 52 300-366 104-173 (324)
163 cd05293 LDH_1 A subgroup of L- 85.5 1.8 3.9E-05 44.6 6.2 115 324-463 4-134 (312)
164 PTZ00345 glycerol-3-phosphate 85.5 1.6 3.4E-05 46.2 5.8 22 324-345 12-33 (365)
165 cd01339 LDH-like_MDH L-lactate 85.1 1.1 2.3E-05 45.4 4.3 114 326-463 1-129 (300)
166 PRK07634 pyrroline-5-carboxyla 85.1 2.7 5.8E-05 40.5 6.8 22 323-344 4-25 (245)
167 PRK14169 bifunctional 5,10-met 84.9 2.7 5.9E-05 43.2 7.1 85 299-429 135-220 (282)
168 PRK06932 glycerate dehydrogena 84.9 6.3 0.00014 40.6 9.8 89 319-446 143-235 (314)
169 PRK14171 bifunctional 5,10-met 84.9 2.7 5.8E-05 43.4 7.0 131 253-429 76-223 (288)
170 PRK14193 bifunctional 5,10-met 84.8 2.7 5.8E-05 43.3 7.0 86 300-429 138-224 (284)
171 PLN02516 methylenetetrahydrofo 84.8 2.7 5.9E-05 43.6 7.1 85 299-429 146-231 (299)
172 PRK15317 alkyl hydroperoxide r 84.7 1 2.2E-05 48.8 4.2 94 257-367 139-243 (517)
173 PRK14168 bifunctional 5,10-met 84.7 2.7 5.9E-05 43.5 7.0 98 298-444 139-237 (297)
174 PRK05597 molybdopterin biosynt 84.7 0.87 1.9E-05 47.6 3.5 109 316-444 24-151 (355)
175 TIGR00507 aroE shikimate 5-deh 84.5 1.7 3.7E-05 43.2 5.3 47 305-366 102-148 (270)
176 TIGR01758 MDH_euk_cyt malate d 84.4 4.5 9.7E-05 42.0 8.5 130 325-473 1-150 (324)
177 PRK06487 glycerate dehydrogena 84.1 8.8 0.00019 39.6 10.4 117 288-444 89-233 (317)
178 PRK15116 sulfur acceptor prote 83.9 1 2.2E-05 45.8 3.5 40 321-371 28-67 (268)
179 PRK12490 6-phosphogluconate de 83.8 4.2 9.1E-05 41.1 7.9 96 325-448 2-98 (299)
180 PRK14182 bifunctional 5,10-met 83.8 3.4 7.3E-05 42.6 7.2 84 300-429 137-221 (282)
181 PRK14173 bifunctional 5,10-met 83.7 3.3 7.1E-05 42.8 7.1 131 253-429 73-219 (287)
182 PRK13581 D-3-phosphoglycerate 83.7 6.7 0.00014 43.3 9.9 92 263-367 62-172 (526)
183 PRK09310 aroDE bifunctional 3- 83.6 1.7 3.7E-05 47.3 5.3 47 305-366 317-363 (477)
184 KOG0069 Glyoxylate/hydroxypyru 83.6 12 0.00026 39.6 11.3 124 298-462 120-266 (336)
185 PRK14180 bifunctional 5,10-met 83.6 3.5 7.5E-05 42.5 7.2 131 253-429 75-222 (282)
186 cd01338 MDH_choloroplast_like 83.3 5.9 0.00013 41.1 8.9 121 324-464 3-143 (322)
187 PRK10886 DnaA initiator-associ 83.2 3.7 7.9E-05 39.9 6.9 102 324-446 42-145 (196)
188 PRK14181 bifunctional 5,10-met 83.2 3.5 7.6E-05 42.5 7.1 90 298-429 131-221 (287)
189 TIGR01759 MalateDH-SF1 malate 82.9 4.9 0.00011 41.8 8.1 122 324-464 4-144 (323)
190 PRK11790 D-3-phosphoglycerate 82.6 28 0.0006 37.4 13.8 147 261-445 71-240 (409)
191 KOG2337 Ubiquitin activating E 82.3 1 2.2E-05 50.1 2.9 39 318-367 335-373 (669)
192 PRK07411 hypothetical protein; 82.2 1.1 2.4E-05 47.5 3.1 109 316-444 34-161 (390)
193 PF13738 Pyr_redox_3: Pyridine 81.9 1.4 3E-05 40.5 3.3 30 327-367 1-30 (203)
194 PRK14620 NAD(P)H-dependent gly 81.7 2.8 6.1E-05 42.5 5.7 31 325-367 2-32 (326)
195 PRK14167 bifunctional 5,10-met 81.6 4.1 8.9E-05 42.2 6.9 96 300-444 137-233 (297)
196 PLN02616 tetrahydrofolate dehy 81.6 4 8.6E-05 43.5 6.9 84 300-429 211-295 (364)
197 PRK07878 molybdopterin biosynt 81.3 1.2 2.6E-05 47.1 3.0 107 316-442 38-163 (392)
198 PF03446 NAD_binding_2: NAD bi 81.0 1.6 3.6E-05 40.0 3.5 95 324-448 2-98 (163)
199 PRK07502 cyclohexadienyl dehyd 80.9 5.5 0.00012 40.2 7.5 34 324-367 7-40 (307)
200 PRK14186 bifunctional 5,10-met 80.8 4.9 0.00011 41.7 7.1 84 300-429 138-222 (297)
201 PRK07679 pyrroline-5-carboxyla 80.5 7.9 0.00017 38.6 8.3 22 324-345 4-25 (279)
202 COG0334 GdhA Glutamate dehydro 80.4 62 0.0013 35.3 15.4 193 241-461 110-325 (411)
203 cd05290 LDH_3 A subgroup of L- 80.4 3.9 8.5E-05 42.1 6.3 116 325-464 1-134 (307)
204 PF02737 3HCDH_N: 3-hydroxyacy 80.3 1.7 3.6E-05 41.1 3.3 31 325-367 1-31 (180)
205 TIGR02279 PaaC-3OHAcCoADH 3-hy 80.3 4.5 9.7E-05 44.5 7.0 32 324-367 6-37 (503)
206 TIGR01915 npdG NADPH-dependent 80.2 3.4 7.4E-05 39.8 5.5 102 325-449 2-106 (219)
207 TIGR03376 glycerol3P_DH glycer 80.0 3.2 6.9E-05 43.5 5.6 21 325-345 1-21 (342)
208 PRK14185 bifunctional 5,10-met 80.0 5.2 0.00011 41.4 7.0 88 300-429 137-225 (293)
209 PLN02306 hydroxypyruvate reduc 79.9 11 0.00025 40.2 9.7 102 320-444 162-272 (386)
210 PTZ00142 6-phosphogluconate de 79.7 3.3 7.2E-05 45.2 5.8 103 324-448 2-105 (470)
211 COG0686 Ald Alanine dehydrogen 79.7 1.2 2.5E-05 47.0 2.2 106 324-451 169-285 (371)
212 PLN02897 tetrahydrofolate dehy 79.7 5.1 0.00011 42.4 6.9 84 300-429 194-278 (345)
213 PRK05479 ketol-acid reductoiso 79.6 5.5 0.00012 41.8 7.1 30 316-345 10-39 (330)
214 PRK06270 homoserine dehydrogen 79.5 16 0.00034 38.1 10.4 111 324-441 3-123 (341)
215 PF01494 FAD_binding_3: FAD bi 79.4 1.6 3.4E-05 42.7 3.0 35 324-370 2-36 (356)
216 cd01486 Apg7 Apg7 is an E1-lik 78.8 1.9 4E-05 45.0 3.3 32 325-367 1-32 (307)
217 COG0499 SAM1 S-adenosylhomocys 78.7 11 0.00024 40.6 9.0 128 293-465 185-317 (420)
218 PF00070 Pyr_redox: Pyridine n 78.7 2.5 5.5E-05 34.1 3.5 35 325-371 1-35 (80)
219 TIGR01408 Ube1 ubiquitin-activ 78.4 1.2 2.6E-05 52.9 2.0 42 317-367 416-457 (1008)
220 PRK08291 ectoine utilization p 78.0 7 0.00015 40.3 7.3 86 324-429 133-219 (330)
221 cd01491 Ube1_repeat1 Ubiquitin 77.9 1.9 4.2E-05 44.2 3.1 34 323-367 19-52 (286)
222 TIGR01292 TRX_reduct thioredox 77.9 1.9 4.1E-05 41.7 3.0 31 325-367 2-32 (300)
223 COG0240 GpsA Glycerol-3-phosph 77.7 4.2 9E-05 42.8 5.5 33 324-366 2-34 (329)
224 cd00300 LDH_like L-lactate deh 77.6 5.1 0.00011 40.8 6.1 114 326-463 1-129 (300)
225 PLN02819 lysine-ketoglutarate 77.6 7.3 0.00016 46.7 8.1 98 323-431 203-325 (1042)
226 cd01484 E1-2_like Ubiquitin ac 77.1 2.3 5E-05 42.3 3.3 104 325-444 1-124 (234)
227 PRK09754 phenylpropionate diox 77.0 3.1 6.8E-05 43.2 4.5 35 323-367 3-37 (396)
228 COG0476 ThiF Dinucleotide-util 76.6 2.4 5.2E-05 41.8 3.3 38 316-367 26-63 (254)
229 cd05292 LDH_2 A subgroup of L- 76.5 9.9 0.00021 38.9 7.8 114 325-463 2-130 (308)
230 PLN02688 pyrroline-5-carboxyla 76.5 10 0.00022 37.1 7.7 21 325-345 2-22 (266)
231 PRK06141 ornithine cyclodeamin 76.2 12 0.00025 38.4 8.3 105 324-457 126-231 (314)
232 TIGR02371 ala_DH_arch alanine 76.1 16 0.00035 37.7 9.3 104 324-457 129-234 (325)
233 COG5322 Predicted dehydrogenas 76.1 2.9 6.4E-05 43.4 3.8 45 297-344 144-189 (351)
234 PRK13403 ketol-acid reductoiso 76.0 3.5 7.6E-05 43.5 4.5 86 315-430 8-96 (335)
235 PRK06249 2-dehydropantoate 2-r 75.9 5.6 0.00012 40.3 5.8 22 324-345 6-27 (313)
236 PLN02520 bifunctional 3-dehydr 75.8 4.4 9.4E-05 44.8 5.3 33 322-366 378-410 (529)
237 COG0190 FolD 5,10-methylene-te 75.7 6 0.00013 40.9 6.0 132 252-429 73-220 (283)
238 TIGR01327 PGDH D-3-phosphoglyc 75.6 14 0.00031 40.8 9.2 92 263-367 60-170 (525)
239 PF05834 Lycopene_cycl: Lycope 75.5 3.3 7.2E-05 43.0 4.1 35 326-370 2-36 (374)
240 TIGR01283 nifE nitrogenase mol 75.4 3.6 7.9E-05 44.2 4.5 192 149-416 204-403 (456)
241 TIGR00873 gnd 6-phosphoglucona 75.0 9 0.00019 41.9 7.4 99 325-446 1-100 (467)
242 cd01488 Uba3_RUB Ubiquitin act 74.1 2.8 6E-05 43.2 3.1 32 325-367 1-32 (291)
243 PRK06823 ornithine cyclodeamin 73.1 24 0.00052 36.5 9.6 105 324-458 129-235 (315)
244 PRK12409 D-amino acid dehydrog 72.8 3.3 7.1E-05 42.8 3.3 33 324-368 2-34 (410)
245 PRK07340 ornithine cyclodeamin 72.6 23 0.00049 36.3 9.3 102 324-457 126-229 (304)
246 PRK11880 pyrroline-5-carboxyla 72.6 9.8 0.00021 37.3 6.4 35 324-367 3-37 (267)
247 TIGR01505 tartro_sem_red 2-hyd 72.4 8.4 0.00018 38.5 6.0 31 325-367 1-31 (291)
248 PRK15409 bifunctional glyoxyla 72.4 31 0.00066 35.9 10.2 123 288-444 89-236 (323)
249 cd01489 Uba2_SUMO Ubiquitin ac 72.2 3.9 8.5E-05 42.5 3.7 32 325-367 1-32 (312)
250 TIGR01470 cysG_Nterm siroheme 72.0 3.9 8.5E-05 39.6 3.5 26 321-346 7-32 (205)
251 PRK07877 hypothetical protein; 71.5 6.5 0.00014 45.4 5.5 105 321-444 105-229 (722)
252 PRK06719 precorrin-2 dehydroge 71.1 4.3 9.4E-05 37.7 3.4 25 321-345 11-35 (157)
253 TIGR02028 ChlP geranylgeranyl 70.9 3.5 7.5E-05 43.2 3.0 21 325-345 2-22 (398)
254 PRK06847 hypothetical protein; 70.2 4.2 9E-05 41.2 3.3 21 324-344 5-25 (375)
255 TIGR01285 nifN nitrogenase mol 70.1 26 0.00056 37.7 9.4 96 309-440 300-395 (432)
256 PRK06718 precorrin-2 dehydroge 70.0 4.6 0.0001 39.0 3.5 34 321-366 8-41 (202)
257 PRK04176 ribulose-1,5-biphosph 69.8 2.6 5.7E-05 42.0 1.8 33 323-367 25-57 (257)
258 COG2072 TrkA Predicted flavopr 69.8 4.4 9.6E-05 43.6 3.6 34 324-368 9-42 (443)
259 PLN02172 flavin-containing mon 69.6 4.4 9.6E-05 43.8 3.6 21 324-344 11-31 (461)
260 PRK06035 3-hydroxyacyl-CoA deh 69.6 4.5 9.8E-05 40.5 3.4 32 324-367 4-35 (291)
261 PRK06407 ornithine cyclodeamin 69.6 8.2 0.00018 39.6 5.3 105 324-457 118-224 (301)
262 PRK11883 protoporphyrinogen ox 69.4 2.2 4.8E-05 44.2 1.2 22 324-345 1-22 (451)
263 TIGR03366 HpnZ_proposed putati 69.4 10 0.00022 37.3 5.8 47 305-366 107-153 (280)
264 TIGR02023 BchP-ChlP geranylger 69.4 4 8.7E-05 42.2 3.1 21 325-345 2-22 (388)
265 PRK09880 L-idonate 5-dehydroge 69.1 9.1 0.0002 38.7 5.5 45 307-366 158-202 (343)
266 cd00377 ICL_PEPM Members of th 69.1 1.1E+02 0.0023 30.6 12.9 54 409-472 174-227 (243)
267 PRK06476 pyrroline-5-carboxyla 68.8 27 0.00058 34.3 8.5 20 325-344 2-21 (258)
268 PRK12769 putative oxidoreducta 68.7 4.6 9.9E-05 45.3 3.5 33 323-367 327-359 (654)
269 PLN02268 probable polyamine ox 68.6 1.9 4.1E-05 45.0 0.5 21 325-345 2-22 (435)
270 cd01974 Nitrogenase_MoFe_beta 68.5 27 0.00057 37.5 9.1 83 315-417 298-386 (435)
271 PRK07233 hypothetical protein; 68.3 4.1 8.9E-05 41.8 2.8 31 325-367 1-31 (434)
272 PF01266 DAO: FAD dependent ox 68.2 5.2 0.00011 39.1 3.4 31 325-367 1-31 (358)
273 PRK12810 gltD glutamate syntha 68.1 4.8 0.0001 43.2 3.5 32 324-367 144-175 (471)
274 PRK13512 coenzyme A disulfide 68.0 5.6 0.00012 42.2 3.9 34 324-367 2-35 (438)
275 cd08237 ribitol-5-phosphate_DH 67.6 84 0.0018 31.9 12.1 21 324-344 165-185 (341)
276 PRK06928 pyrroline-5-carboxyla 67.6 14 0.0003 37.1 6.4 35 324-367 2-37 (277)
277 PRK08163 salicylate hydroxylas 67.6 4.9 0.00011 41.1 3.3 21 324-344 5-25 (396)
278 cd01490 Ube1_repeat2 Ubiquitin 67.5 4.9 0.00011 43.7 3.4 37 325-367 1-37 (435)
279 PRK04965 NADH:flavorubredoxin 67.5 7.5 0.00016 40.0 4.6 35 324-368 3-37 (377)
280 PRK14852 hypothetical protein; 67.4 9.3 0.0002 45.6 5.8 129 316-470 328-487 (989)
281 PRK07819 3-hydroxybutyryl-CoA 67.4 5.2 0.00011 40.5 3.3 22 324-345 6-27 (286)
282 cd01968 Nitrogenase_NifE_I Nit 67.4 23 0.00049 37.5 8.2 193 149-417 165-365 (410)
283 PF13454 NAD_binding_9: FAD-NA 67.2 5.4 0.00012 36.4 3.1 36 327-369 1-36 (156)
284 TIGR02622 CDP_4_6_dhtase CDP-g 67.1 11 0.00023 38.3 5.5 106 322-444 3-127 (349)
285 TIGR01214 rmlD dTDP-4-dehydror 66.9 16 0.00036 35.3 6.6 59 325-418 1-60 (287)
286 PRK05732 2-octaprenyl-6-methox 66.7 5.3 0.00011 40.7 3.2 34 324-366 4-37 (395)
287 PRK14106 murD UDP-N-acetylmura 66.5 5.9 0.00013 41.8 3.6 25 321-345 3-27 (450)
288 PRK07530 3-hydroxybutyryl-CoA 66.3 5.7 0.00012 39.7 3.4 32 324-367 5-36 (292)
289 PRK12771 putative glutamate sy 66.3 5.5 0.00012 43.8 3.5 33 323-367 137-169 (564)
290 PRK09564 coenzyme A disulfide 66.2 6.3 0.00014 41.3 3.8 36 324-369 1-36 (444)
291 PF13450 NAD_binding_8: NAD(P) 66.1 5.9 0.00013 31.7 2.8 30 328-369 1-30 (68)
292 COG1179 Dinucleotide-utilizing 66.0 4.7 0.0001 41.2 2.6 44 318-372 25-68 (263)
293 PRK07236 hypothetical protein; 65.9 5.7 0.00012 40.9 3.3 22 324-345 7-28 (386)
294 TIGR01790 carotene-cycl lycope 65.9 5 0.00011 41.0 2.9 30 326-367 2-31 (388)
295 TIGR01316 gltA glutamate synth 65.9 5.7 0.00012 42.4 3.5 32 324-367 134-165 (449)
296 KOG2304 3-hydroxyacyl-CoA dehy 65.7 3.7 8.1E-05 41.8 1.9 32 324-367 12-43 (298)
297 PRK07364 2-octaprenyl-6-methox 65.6 4.8 0.0001 41.4 2.8 22 324-345 19-40 (415)
298 PRK06475 salicylate hydroxylas 65.6 5.1 0.00011 41.6 2.9 21 324-344 3-23 (400)
299 COG0644 FixC Dehydrogenases (f 65.4 5.7 0.00012 41.5 3.3 36 324-371 4-39 (396)
300 TIGR02032 GG-red-SF geranylger 65.3 5.7 0.00012 38.1 3.0 32 325-368 2-33 (295)
301 PTZ00318 NADH dehydrogenase-li 65.2 4.8 0.0001 42.5 2.7 33 323-367 10-42 (424)
302 cd01965 Nitrogenase_MoFe_beta_ 65.2 26 0.00057 37.3 8.2 97 322-448 298-400 (428)
303 COG1086 Predicted nucleoside-d 64.9 6 0.00013 44.5 3.4 140 251-417 166-334 (588)
304 PRK12779 putative bifunctional 64.7 6.3 0.00014 46.6 3.8 39 323-373 306-348 (944)
305 PRK07589 ornithine cyclodeamin 64.3 21 0.00046 37.6 7.2 105 324-458 130-238 (346)
306 PRK11749 dihydropyrimidine deh 64.2 6 0.00013 42.1 3.2 32 324-367 141-172 (457)
307 PRK11728 hydroxyglutarate oxid 64.1 6.9 0.00015 40.5 3.6 34 324-367 3-36 (393)
308 PF00743 FMO-like: Flavin-bind 64.0 7.1 0.00015 43.2 3.8 22 324-345 2-23 (531)
309 TIGR03169 Nterm_to_SelD pyridi 64.0 4.6 9.9E-05 41.1 2.2 36 325-369 1-36 (364)
310 KOG2018 Predicted dinucleotide 63.9 6.4 0.00014 41.8 3.2 38 321-369 72-109 (430)
311 PLN02676 polyamine oxidase 63.8 13 0.00029 40.4 5.8 22 324-345 27-48 (487)
312 cd01967 Nitrogenase_MoFe_alpha 63.7 57 0.0012 34.2 10.3 154 129-344 134-307 (406)
313 PRK12831 putative oxidoreducta 63.7 6.7 0.00015 42.3 3.5 33 323-367 140-172 (464)
314 PRK14478 nitrogenase molybdenu 63.6 37 0.00081 37.0 9.2 71 251-344 275-345 (475)
315 PRK11559 garR tartronate semia 63.5 21 0.00045 35.6 6.7 32 324-367 3-34 (296)
316 PRK06753 hypothetical protein; 63.4 6.4 0.00014 40.0 3.1 21 325-345 2-22 (373)
317 PLN02852 ferredoxin-NADP+ redu 63.3 9.5 0.00021 42.0 4.6 39 324-372 27-69 (491)
318 PRK12770 putative glutamate sy 63.2 7.2 0.00016 39.9 3.5 33 323-367 18-50 (352)
319 PRK06184 hypothetical protein; 63.2 6.8 0.00015 42.1 3.4 22 324-345 4-25 (502)
320 PRK11445 putative oxidoreducta 63.2 6.8 0.00015 40.1 3.3 21 325-345 3-23 (351)
321 COG1252 Ndh NADH dehydrogenase 62.9 6.9 0.00015 42.2 3.4 35 323-367 3-37 (405)
322 PRK07608 ubiquinone biosynthes 62.9 6.3 0.00014 40.1 3.0 32 324-367 6-37 (388)
323 PF13407 Peripla_BP_4: Peripla 62.9 24 0.00051 33.4 6.7 146 144-316 53-206 (257)
324 PRK12814 putative NADPH-depend 62.7 6.9 0.00015 44.1 3.5 33 323-367 193-225 (652)
325 PRK12570 N-acetylmuramic acid- 62.6 23 0.00051 36.4 7.0 39 408-448 127-166 (296)
326 PTZ00245 ubiquitin activating 62.6 6.5 0.00014 40.6 2.9 38 316-367 22-59 (287)
327 PRK09126 hypothetical protein; 62.4 6.4 0.00014 40.2 2.9 22 324-345 4-25 (392)
328 TIGR00292 thiazole biosynthesi 62.3 4.4 9.5E-05 40.4 1.7 33 324-368 22-54 (254)
329 TIGR01377 soxA_mon sarcosine o 62.1 7.1 0.00015 39.6 3.2 34 325-370 2-35 (380)
330 PRK07045 putative monooxygenas 61.9 7.2 0.00016 40.0 3.2 22 324-345 6-27 (388)
331 KOG2711 Glycerol-3-phosphate d 61.7 42 0.00091 36.0 8.7 111 323-445 21-140 (372)
332 PRK09853 putative selenate red 61.5 7.1 0.00015 46.7 3.4 33 323-367 539-571 (1019)
333 TIGR01771 L-LDH-NAD L-lactate 61.4 13 0.00028 38.1 5.0 112 328-463 1-127 (299)
334 PF13241 NAD_binding_7: Putati 61.3 4.7 0.0001 34.6 1.5 36 321-368 5-40 (103)
335 PRK14476 nitrogenase molybdenu 61.2 24 0.00051 38.4 7.1 32 149-183 176-207 (455)
336 PRK08219 short chain dehydroge 60.8 23 0.00049 32.7 6.0 76 324-419 4-82 (227)
337 PRK07251 pyridine nucleotide-d 60.8 7.3 0.00016 41.1 3.1 33 324-368 4-36 (438)
338 PLN02545 3-hydroxybutyryl-CoA 60.6 8.4 0.00018 38.6 3.4 32 324-367 5-36 (295)
339 PRK11259 solA N-methyltryptoph 60.3 8.1 0.00017 39.1 3.2 34 324-369 4-37 (376)
340 PRK08773 2-octaprenyl-3-methyl 60.3 6.6 0.00014 40.4 2.6 32 324-367 7-38 (392)
341 PRK06130 3-hydroxybutyryl-CoA 60.2 8.5 0.00018 38.7 3.3 31 324-366 5-35 (311)
342 PRK06199 ornithine cyclodeamin 60.2 26 0.00057 37.2 7.1 88 324-428 156-250 (379)
343 cd01972 Nitrogenase_VnfE_like 60.1 68 0.0015 34.3 10.2 157 128-345 135-315 (426)
344 PRK07417 arogenate dehydrogena 60.0 20 0.00044 35.8 5.9 31 325-367 2-32 (279)
345 cd01493 APPBP1_RUB Ubiquitin a 60.0 7.2 0.00016 42.2 2.9 33 324-367 21-53 (425)
346 PRK12778 putative bifunctional 59.7 8.6 0.00019 43.9 3.6 33 323-367 431-463 (752)
347 PLN00112 malate dehydrogenase 59.7 27 0.00057 38.3 7.1 125 324-464 101-241 (444)
348 PRK05714 2-octaprenyl-3-methyl 59.6 7.1 0.00015 40.3 2.7 32 324-367 3-34 (405)
349 PRK12266 glpD glycerol-3-phosp 59.5 7.7 0.00017 42.2 3.1 34 324-369 7-40 (508)
350 PRK00141 murD UDP-N-acetylmura 59.5 8.6 0.00019 41.5 3.4 26 320-345 12-37 (473)
351 PLN00093 geranylgeranyl diphos 59.5 7.9 0.00017 41.7 3.1 22 324-345 40-61 (450)
352 TIGR01984 UbiH 2-polyprenyl-6- 59.4 7.5 0.00016 39.5 2.8 21 326-346 2-22 (382)
353 TIGR03315 Se_ygfK putative sel 59.3 8.1 0.00018 46.2 3.4 33 323-367 537-569 (1012)
354 PF03447 NAD_binding_3: Homose 59.2 18 0.00038 31.2 4.7 95 330-450 1-95 (117)
355 PRK05708 2-dehydropantoate 2-r 59.0 29 0.00062 35.3 6.9 22 324-345 3-24 (305)
356 PRK10157 putative oxidoreducta 58.7 8.1 0.00018 41.0 3.0 32 324-367 6-37 (428)
357 TIGR01988 Ubi-OHases Ubiquinon 58.6 8 0.00017 39.0 2.8 20 326-345 2-21 (385)
358 PRK07588 hypothetical protein; 58.6 8.6 0.00019 39.5 3.1 21 325-345 2-22 (391)
359 PRK06416 dihydrolipoamide dehy 58.6 8.1 0.00018 40.9 3.0 33 324-368 5-37 (462)
360 PRK14477 bifunctional nitrogen 58.5 40 0.00086 40.0 8.8 190 155-416 197-397 (917)
361 COG3349 Uncharacterized conser 58.5 4.5 9.7E-05 44.7 1.1 46 324-372 1-51 (485)
362 PRK01747 mnmC bifunctional tRN 58.4 8.9 0.00019 43.0 3.4 35 324-370 261-295 (662)
363 KOG0743 AAA+-type ATPase [Post 58.3 14 0.0003 40.6 4.7 153 115-331 191-345 (457)
364 TIGR00031 UDP-GALP_mutase UDP- 58.0 8.8 0.00019 40.8 3.1 31 325-367 3-33 (377)
365 TIGR01373 soxB sarcosine oxida 57.9 11 0.00024 38.9 3.8 36 324-369 31-66 (407)
366 TIGR01317 GOGAT_sm_gam glutama 57.9 9.8 0.00021 41.2 3.5 32 324-367 144-175 (485)
367 PRK01438 murD UDP-N-acetylmura 57.7 12 0.00025 40.1 4.0 23 322-344 15-37 (480)
368 PF02423 OCD_Mu_crystall: Orni 57.7 19 0.00041 37.0 5.4 104 324-457 129-236 (313)
369 PRK08244 hypothetical protein; 57.6 9 0.00019 41.0 3.2 22 324-345 3-24 (493)
370 TIGR03736 PRTRC_ThiF PRTRC sys 57.5 12 0.00026 37.7 3.8 44 323-369 11-56 (244)
371 PLN02463 lycopene beta cyclase 57.5 8.5 0.00019 41.6 3.0 21 324-344 29-49 (447)
372 TIGR03364 HpnW_proposed FAD de 57.4 9.1 0.0002 38.8 3.0 32 325-368 2-33 (365)
373 TIGR01350 lipoamide_DH dihydro 57.4 9.1 0.0002 40.4 3.1 30 325-366 3-32 (461)
374 PRK00711 D-amino acid dehydrog 57.3 9.8 0.00021 39.2 3.3 31 325-367 2-32 (416)
375 PRK08243 4-hydroxybenzoate 3-m 57.2 10 0.00022 39.3 3.3 22 324-345 3-24 (392)
376 COG1063 Tdh Threonine dehydrog 57.2 15 0.00033 38.1 4.6 59 294-366 143-201 (350)
377 PRK12491 pyrroline-5-carboxyla 57.2 15 0.00033 37.0 4.5 35 324-366 3-37 (272)
378 PRK08618 ornithine cyclodeamin 57.0 34 0.00074 35.2 7.1 103 324-456 128-232 (325)
379 PF01946 Thi4: Thi4 family; PD 57.0 11 0.00025 37.9 3.5 35 324-370 18-52 (230)
380 PRK14806 bifunctional cyclohex 57.0 29 0.00063 39.3 7.2 34 324-367 4-37 (735)
381 PRK11730 fadB multifunctional 56.9 8.9 0.00019 43.9 3.1 44 402-448 413-456 (715)
382 COG1052 LdhA Lactate dehydroge 56.8 48 0.001 34.7 8.2 37 320-368 143-179 (324)
383 PRK12416 protoporphyrinogen ox 56.8 7.2 0.00016 41.2 2.2 47 324-370 2-55 (463)
384 PRK08507 prephenate dehydrogen 56.8 57 0.0012 32.4 8.4 33 325-367 2-34 (275)
385 PRK08010 pyridine nucleotide-d 56.6 8.8 0.00019 40.5 2.9 32 324-367 4-35 (441)
386 TIGR03143 AhpF_homolog putativ 56.6 8.9 0.00019 42.2 3.0 32 325-368 6-37 (555)
387 COG0665 DadA Glycine/D-amino a 56.5 11 0.00025 38.0 3.6 36 323-370 4-39 (387)
388 PRK06185 hypothetical protein; 56.5 9.4 0.0002 39.3 3.0 32 324-367 7-38 (407)
389 PRK10262 thioredoxin reductase 56.5 10 0.00022 38.1 3.1 22 324-345 7-28 (321)
390 TIGR01789 lycopene_cycl lycope 56.3 11 0.00025 39.3 3.6 34 326-369 2-35 (370)
391 PF02558 ApbA: Ketopantoate re 56.1 11 0.00025 33.3 3.1 31 326-368 1-31 (151)
392 PRK11101 glpA sn-glycerol-3-ph 56.1 10 0.00022 41.8 3.3 33 324-368 7-39 (546)
393 PRK08655 prephenate dehydrogen 56.1 27 0.00059 37.6 6.5 31 325-367 2-33 (437)
394 PRK12809 putative oxidoreducta 56.0 11 0.00023 42.4 3.5 34 323-368 310-343 (639)
395 PRK07494 2-octaprenyl-6-methox 55.9 9.5 0.00021 39.0 2.9 32 324-367 8-39 (388)
396 PRK07538 hypothetical protein; 55.8 10 0.00022 39.6 3.1 20 325-344 2-21 (413)
397 PF12831 FAD_oxidored: FAD dep 55.8 9.2 0.0002 40.6 2.8 33 326-370 2-34 (428)
398 PRK06046 alanine dehydrogenase 55.8 69 0.0015 33.1 9.1 105 324-458 130-236 (326)
399 PF03486 HI0933_like: HI0933-l 55.6 10 0.00023 40.6 3.3 31 325-367 2-32 (409)
400 PRK06912 acoL dihydrolipoamide 55.6 10 0.00022 40.4 3.1 31 325-367 2-32 (458)
401 TIGR00441 gmhA phosphoheptose 55.6 46 0.00099 30.5 7.0 38 409-448 80-118 (154)
402 PRK13369 glycerol-3-phosphate 55.5 9.6 0.00021 41.3 3.0 33 324-368 7-39 (502)
403 TIGR01318 gltD_gamma_fam gluta 55.5 12 0.00025 40.4 3.6 32 324-367 142-173 (467)
404 PRK02472 murD UDP-N-acetylmura 55.1 11 0.00024 39.6 3.4 25 321-345 3-27 (447)
405 PRK12775 putative trifunctiona 55.0 12 0.00026 44.6 3.9 38 323-372 430-471 (1006)
406 cd05188 MDR Medium chain reduc 55.0 26 0.00056 32.8 5.4 46 307-367 122-167 (271)
407 PRK08020 ubiF 2-octaprenyl-3-m 54.9 9.7 0.00021 39.0 2.8 32 324-367 6-37 (391)
408 COG2423 Predicted ornithine cy 54.9 53 0.0012 34.6 8.2 120 304-460 116-240 (330)
409 PRK07333 2-octaprenyl-6-methox 54.8 9.4 0.0002 39.1 2.7 21 325-345 3-23 (403)
410 TIGR02053 MerA mercuric reduct 54.6 11 0.00023 40.1 3.1 30 326-367 3-32 (463)
411 PRK05441 murQ N-acetylmuramic 54.5 58 0.0013 33.5 8.3 39 408-448 131-170 (299)
412 PRK00048 dihydrodipicolinate r 54.3 80 0.0017 31.5 9.1 91 324-448 2-93 (257)
413 PRK04690 murD UDP-N-acetylmura 54.3 12 0.00025 40.5 3.3 24 322-345 7-30 (468)
414 PRK08849 2-octaprenyl-3-methyl 53.9 12 0.00025 38.7 3.1 21 324-344 4-24 (384)
415 PRK08268 3-hydroxy-acyl-CoA de 53.7 12 0.00026 41.2 3.3 32 324-367 8-39 (507)
416 PTZ00188 adrenodoxin reductase 53.6 16 0.00034 40.7 4.3 39 324-373 40-82 (506)
417 TIGR03219 salicylate_mono sali 53.6 12 0.00025 39.0 3.1 21 325-345 2-22 (414)
418 PRK06292 dihydrolipoamide dehy 53.6 11 0.00025 39.7 3.1 32 324-367 4-35 (460)
419 COG0345 ProC Pyrroline-5-carbo 53.4 39 0.00084 34.6 6.7 36 324-367 2-37 (266)
420 PF03435 Saccharop_dh: Sacchar 53.3 5.9 0.00013 41.1 0.9 89 326-441 1-96 (386)
421 PRK05976 dihydrolipoamide dehy 53.1 13 0.00027 39.8 3.4 32 324-367 5-36 (472)
422 PRK07208 hypothetical protein; 53.1 12 0.00027 39.6 3.3 23 323-345 4-26 (479)
423 PRK08850 2-octaprenyl-6-methox 52.9 11 0.00024 39.1 2.8 32 324-367 5-36 (405)
424 KOG2250 Glutamate/leucine/phen 52.9 1.4E+02 0.0029 33.6 11.0 193 246-462 158-380 (514)
425 PRK08013 oxidoreductase; Provi 52.8 12 0.00026 38.8 3.1 21 324-344 4-24 (400)
426 PRK09897 hypothetical protein; 52.7 13 0.00029 41.2 3.6 34 324-367 2-35 (534)
427 PRK13984 putative oxidoreducta 52.6 13 0.00029 41.1 3.6 33 323-367 283-315 (604)
428 PRK05808 3-hydroxybutyryl-CoA 52.5 13 0.00028 37.0 3.1 31 324-366 4-34 (282)
429 TIGR01408 Ube1 ubiquitin-activ 52.5 11 0.00024 45.0 3.1 39 316-368 20-58 (1008)
430 PRK01390 murD UDP-N-acetylmura 52.4 14 0.00031 39.3 3.6 27 319-345 5-31 (460)
431 PRK05868 hypothetical protein; 52.1 12 0.00027 38.7 3.0 21 324-344 2-22 (372)
432 PRK10015 oxidoreductase; Provi 52.0 12 0.00026 39.8 3.0 32 324-367 6-37 (429)
433 PF00732 GMC_oxred_N: GMC oxid 51.9 9.7 0.00021 37.4 2.1 34 326-370 3-36 (296)
434 COG3380 Predicted NAD/FAD-depe 51.8 14 0.00031 38.7 3.3 33 325-369 3-35 (331)
435 PRK08132 FAD-dependent oxidore 51.8 12 0.00026 40.7 3.1 22 324-345 24-45 (547)
436 TIGR02360 pbenz_hydroxyl 4-hyd 51.4 14 0.00031 38.4 3.3 21 324-344 3-23 (390)
437 PRK06834 hypothetical protein; 51.4 14 0.00031 40.1 3.5 23 323-345 3-25 (488)
438 PRK14694 putative mercuric red 51.4 15 0.00032 39.4 3.5 32 324-367 7-38 (468)
439 PLN02927 antheraxanthin epoxid 51.3 11 0.00024 43.2 2.7 22 324-345 82-103 (668)
440 PLN02985 squalene monooxygenas 51.1 15 0.00033 40.3 3.7 32 324-367 44-75 (514)
441 PRK04308 murD UDP-N-acetylmura 50.9 16 0.00034 38.8 3.6 24 322-345 4-27 (445)
442 TIGR01181 dTDP_gluc_dehyt dTDP 50.8 61 0.0013 31.4 7.4 78 325-418 1-83 (317)
443 PLN02568 polyamine oxidase 50.3 17 0.00038 40.2 4.0 23 324-346 6-28 (539)
444 PRK13748 putative mercuric red 50.2 13 0.00029 40.4 3.0 32 324-367 99-130 (561)
445 cd05006 SIS_GmhA Phosphoheptos 50.2 61 0.0013 30.0 7.0 34 409-445 102-136 (177)
446 TIGR00393 kpsF KpsF/GutQ famil 50.0 69 0.0015 31.2 7.7 34 409-445 48-82 (268)
447 COG0654 UbiH 2-polyprenyl-6-me 50.0 14 0.0003 38.4 3.0 32 324-367 3-34 (387)
448 PRK08294 phenol 2-monooxygenas 49.8 13 0.00028 42.0 2.9 33 324-367 33-65 (634)
449 TIGR01286 nifK nitrogenase mol 49.7 94 0.002 34.6 9.5 23 323-345 363-385 (515)
450 PRK07190 hypothetical protein; 49.6 15 0.00032 40.0 3.2 32 324-367 6-37 (487)
451 PRK06545 prephenate dehydrogen 49.6 57 0.0012 34.0 7.4 22 324-345 1-22 (359)
452 PRK05249 soluble pyridine nucl 49.3 15 0.00034 38.8 3.3 33 324-368 6-38 (461)
453 PF04820 Trp_halogenase: Trypt 49.2 16 0.00035 39.4 3.5 34 325-367 1-34 (454)
454 cd08239 THR_DH_like L-threonin 49.2 34 0.00073 34.2 5.5 47 305-366 150-196 (339)
455 TIGR02437 FadB fatty oxidation 49.2 14 0.0003 42.4 3.1 44 402-448 413-456 (714)
456 cd08231 MDR_TM0436_like Hypoth 49.2 35 0.00075 34.5 5.6 37 304-343 162-198 (361)
457 PRK06126 hypothetical protein; 49.1 17 0.00036 39.6 3.6 32 324-367 8-39 (545)
458 PF01408 GFO_IDH_MocA: Oxidore 49.0 38 0.00082 28.6 5.1 90 325-441 2-91 (120)
459 PRK00311 panB 3-methyl-2-oxobu 48.8 67 0.0014 32.9 7.6 92 125-272 19-115 (264)
460 PRK06183 mhpA 3-(3-hydroxyphen 48.7 15 0.00033 39.9 3.2 22 324-345 11-32 (538)
461 COG1893 ApbA Ketopantoate redu 48.6 56 0.0012 33.7 7.1 22 324-345 1-22 (307)
462 PRK05749 3-deoxy-D-manno-octul 48.4 66 0.0014 33.5 7.7 37 399-441 312-349 (425)
463 COG0565 LasT rRNA methylase [T 48.3 63 0.0014 32.9 7.2 79 324-421 5-85 (242)
464 PRK14989 nitrite reductase sub 48.3 22 0.00048 41.7 4.6 40 324-371 4-43 (847)
465 PRK09987 dTDP-4-dehydrorhamnos 48.2 86 0.0019 31.3 8.2 62 325-418 2-64 (299)
466 TIGR02931 anfK_nitrog Fe-only 48.2 49 0.0011 36.0 7.0 28 149-179 176-203 (461)
467 cd01980 Chlide_reductase_Y Chl 48.1 1.8E+02 0.004 31.0 11.1 51 149-203 166-216 (416)
468 PRK06567 putative bifunctional 48.0 16 0.00034 43.9 3.4 33 323-367 383-415 (1028)
469 KOG0024 Sorbitol dehydrogenase 48.0 23 0.0005 37.7 4.2 48 304-366 155-202 (354)
470 COG1748 LYS9 Saccharopine dehy 47.9 25 0.00055 37.9 4.6 91 324-440 2-96 (389)
471 cd01833 XynB_like SGNH_hydrola 47.8 40 0.00087 29.7 5.2 67 189-270 18-84 (157)
472 PLN02350 phosphogluconate dehy 47.7 39 0.00085 37.4 6.1 104 324-448 7-111 (493)
473 KOG1495 Lactate dehydrogenase 47.6 78 0.0017 33.3 7.8 107 323-448 20-141 (332)
474 PRK14618 NAD(P)H-dependent gly 47.5 18 0.00038 36.9 3.3 99 324-446 5-106 (328)
475 PF14606 Lipase_GDSL_3: GDSL-l 47.4 18 0.0004 34.9 3.2 56 203-278 51-107 (178)
476 TIGR03169 Nterm_to_SelD pyridi 47.4 39 0.00086 34.3 5.8 41 324-370 146-186 (364)
477 TIGR00762 DegV EDD domain prot 47.3 48 0.001 33.2 6.3 118 208-358 19-142 (275)
478 PRK09466 metL bifunctional asp 47.2 46 0.00099 39.1 6.9 109 324-446 459-573 (810)
479 TIGR01692 HIBADH 3-hydroxyisob 46.9 43 0.00093 33.6 5.8 28 328-367 1-28 (288)
480 TIGR01421 gluta_reduc_1 glutat 46.9 17 0.00036 38.9 3.1 32 324-367 3-34 (450)
481 PRK10309 galactitol-1-phosphat 46.8 41 0.00088 33.9 5.7 20 324-343 162-181 (347)
482 PLN02172 flavin-containing mon 46.8 27 0.00059 37.9 4.7 34 323-368 204-237 (461)
483 PRK06617 2-octaprenyl-6-methox 46.7 15 0.00032 37.9 2.6 21 324-344 2-22 (374)
484 PRK06115 dihydrolipoamide dehy 46.7 18 0.00038 38.9 3.2 32 324-367 4-35 (466)
485 PRK06849 hypothetical protein; 46.2 11 0.00024 39.1 1.7 81 323-417 4-85 (389)
486 PRK01710 murD UDP-N-acetylmura 46.1 18 0.0004 38.7 3.3 23 323-345 14-36 (458)
487 TIGR00562 proto_IX_ox protopor 45.9 20 0.00044 37.5 3.5 22 324-345 3-24 (462)
488 TIGR01813 flavo_cyto_c flavocy 45.8 19 0.00041 37.9 3.3 34 326-370 2-35 (439)
489 PLN02240 UDP-glucose 4-epimera 45.7 29 0.00063 34.8 4.4 103 322-442 4-130 (352)
490 PRK02705 murD UDP-N-acetylmura 45.7 18 0.00038 38.4 3.0 21 325-345 2-22 (459)
491 cd03466 Nitrogenase_NifN_2 Nit 45.4 41 0.0009 36.0 5.8 100 321-448 298-401 (429)
492 TIGR02733 desat_CrtD C-3',4' d 45.3 20 0.00043 38.3 3.4 33 324-368 2-34 (492)
493 PRK02006 murD UDP-N-acetylmura 45.3 21 0.00045 38.7 3.5 25 321-345 5-29 (498)
494 KOG3851 Sulfide:quinone oxidor 45.2 15 0.00033 39.3 2.4 23 324-346 40-62 (446)
495 PRK11199 tyrA bifunctional cho 45.1 50 0.0011 34.8 6.3 32 324-367 99-131 (374)
496 PRK07121 hypothetical protein; 45.0 19 0.00042 38.7 3.3 34 324-369 21-54 (492)
497 PRK06116 glutathione reductase 44.9 19 0.00041 38.2 3.1 31 325-367 6-36 (450)
498 TIGR02818 adh_III_F_hyde S-(hy 44.6 42 0.00092 34.4 5.5 32 324-366 187-218 (368)
499 PLN02661 Putative thiazole syn 44.5 21 0.00045 38.1 3.3 34 324-368 93-126 (357)
500 PF02254 TrkA_N: TrkA-N domain 44.5 32 0.00069 29.0 3.9 30 326-367 1-30 (116)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.1e-175 Score=1364.28 Aligned_cols=428 Identities=53% Similarity=0.907 Sum_probs=419.9
Q ss_pred ceeeccCccccccCCCCCcCCCCChHhhhccCcCCCCCCccccHHHHHHHHHHHHhccccccCCCCCCCCchhHHHHHHH
Q 011618 25 PCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNR 104 (481)
Q Consensus 25 ~~~~~~~G~~~l~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~ 104 (481)
++..+++|+++|+||++|||+|||.+||++|||||||||.|.|+|+|+.||+.+|++++ +||+||+||+.
T Consensus 24 ~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~----------~~l~ky~~L~~ 93 (582)
T KOG1257|consen 24 PVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLT----------SPLAKYIYLMD 93 (582)
T ss_pred ccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhcc----------chHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred hhcccceeeeeeeccCcccccccccchhhHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceee
Q 011618 105 LHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRIL 184 (481)
Q Consensus 105 L~~rNe~LFy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~rrprGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rIL 184 (481)
||+|||+|||+++++|++|+||||||||||+|||+||++||+|+|||||++|+|||.++|+|||.++|++||||||+|||
T Consensus 94 L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerIL 173 (582)
T KOG1257|consen 94 LQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERIL 173 (582)
T ss_pred HHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccccccchhhhhhhhhcCCCCCceecEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhC-
Q 011618 185 GLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW- 263 (481)
Q Consensus 185 GLGDlG~~Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~- 263 (481)
||||||++|||||+||++||||||||+|++|||||||||||||+||+||+|+|+|++|++|++||+|+||||+||+++|
T Consensus 174 GLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG 253 (582)
T KOG1257|consen 174 GLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYG 253 (582)
T ss_pred cccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeecCCCchHHHHHHHHhhcCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHH
Q 011618 264 PKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAV 343 (481)
Q Consensus 264 P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~ 343 (481)
|+++||||||+++|||++|+|||+++|||||||||||||+|||||+|+|++|++|+| ++|||+|||+||+|||+||+
T Consensus 254 ~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd---~~ilf~GAG~A~~GIA~l~v 330 (582)
T KOG1257|consen 254 PNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSD---HVILFLGAGEAALGIANLIV 330 (582)
T ss_pred cceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCcccc---ceEEEecCchHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHcCCChhhhcCeEEEEeccceeecCCC-CCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCC
Q 011618 344 QAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVF 422 (481)
Q Consensus 344 ~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~-~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~F 422 (481)
.+|+ ++|+|+|||+++|||+|++|||+++|+ +++++|++|||+++++ .+|+|||+.||||||||+|++||+|
T Consensus 331 ~~m~-~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~------~~L~e~V~~vKPtvLiG~S~~~g~F 403 (582)
T KOG1257|consen 331 MAMV-KEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEI------KDLEEAVKEVKPTVLIGASGVGGAF 403 (582)
T ss_pred HHHH-HcCCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHH------HHHHHHHHhcCCcEEEecccCCccC
Confidence 9999 679999999999999999999999996 9999999999998754 5899999999999999999999999
Q ss_pred CHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcccCCccccccCcee
Q 011618 423 NEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYLMAARSSFLTSSFV 476 (481)
Q Consensus 423 t~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt~g~r~~f~~~~~~ 476 (481)
||||||+|++ +|||||||||||||+++| |||||||+||+| ||+|++|||.
T Consensus 404 teevl~~Ma~-~~erPiIFalSNPT~~aE--Ctae~ay~~t~G-r~ifaSGSPF 453 (582)
T KOG1257|consen 404 TEEVLRAMAK-SNERPIIFALSNPTSKAE--CTAEQAYKWTKG-RAIFASGSPF 453 (582)
T ss_pred CHHHHHHHHh-cCCCceEEecCCCccccc--cCHHHHhhhcCC-cEEEecCCCC
Confidence 9999999975 999999999999999999 999999999996 9999999985
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-173 Score=1372.09 Aligned_cols=435 Identities=46% Similarity=0.801 Sum_probs=421.4
Q ss_pred CCceeeccCccccccCCCCCcCCCCChHhhhccCcCCCCCCccccHHHHHHHHHHHHhccccccCCCCCCCCchhHHHHH
Q 011618 23 PGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRIL 102 (481)
Q Consensus 23 ~~~~~~~~~G~~~l~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L 102 (481)
.....+..+|.++|+||.+|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||
T Consensus 8 ~~~~~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~~L 77 (563)
T PRK13529 8 KRPLYTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKP----------TDLEKHIYL 77 (563)
T ss_pred CcceeecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCC----------ChHHHHHHH
Confidence 4445667899999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHhhcccceeeeeeeccCcccccccccchhhHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCce
Q 011618 103 NRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSR 182 (481)
Q Consensus 103 ~~L~~rNe~LFy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~rrprGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~r 182 (481)
++||+|||+|||+++++|++||||||||||||+|||+||++||+|||||||++|+|+|+++++|||.++|++||||||||
T Consensus 78 ~~L~~~Ne~Lfy~ll~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~r 157 (563)
T PRK13529 78 RNLQDRNETLFYRLLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGER 157 (563)
T ss_pred HHHHhcCchhhHHHHHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCccccccchhhhhhhhhcCCCCCceecEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHh
Q 011618 183 ILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHAR 262 (481)
Q Consensus 183 ILGLGDlG~~Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~ 262 (481)
||||||||++||||||||++|||+||||||++|||||||||||||+||+||+|+||||||++|++||+|+||||++|+++
T Consensus 158 ILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~ 237 (563)
T PRK13529 158 ILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRR 237 (563)
T ss_pred eeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeecCCCchHHHHHHHHhhcCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHH
Q 011618 263 WPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMA 342 (481)
Q Consensus 263 ~P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll 342 (481)
||+++||||||+++|||+||+|||+++|||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||
T Consensus 238 ~P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d---~riv~~GAGsAgiGia~ll 314 (563)
T PRK13529 238 FPNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSD---QRIVFLGAGSAGCGIADQI 314 (563)
T ss_pred CCCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCC---cCCcCCCCCHHHHhcccCCcEEEeecCCC
Q 011618 343 VQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD---FMGLREGASLLEVVRKVKPHVLLGLSGVG 419 (481)
Q Consensus 343 ~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~---~~~~~~~~~L~e~V~~vkptvLIG~S~~~ 419 (481)
+++|+ ++|+|+|||++||||||++|||+++|++|+++|++|||+.++ |.......+|+|||+++|||||||+|+++
T Consensus 315 ~~~~~-~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~ 393 (563)
T PRK13529 315 VAAMV-REGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQP 393 (563)
T ss_pred HHHHH-HcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCC
Confidence 99999 689999999999999999999999999999999999998654 21112347899999999999999999999
Q ss_pred CCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcccCCccccccCce
Q 011618 420 GVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYLMAARSSFLTSSF 475 (481)
Q Consensus 420 g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt~g~r~~f~~~~~ 475 (481)
|+||||||++|++ +|+|||||||||||++|| |||||||+||+| |++|+|||+
T Consensus 394 g~Ft~evv~~Ma~-~~erPIIFaLSNPt~~aE--~tpe~a~~~T~G-rai~AtGsp 445 (563)
T PRK13529 394 GAFTEEIVKEMAA-HCERPIIFPLSNPTSRAE--ATPEDLIAWTDG-RALVATGSP 445 (563)
T ss_pred CCCCHHHHHHHHh-cCCCCEEEECCCcCCCcc--cCHHHHHHhhcC-CEEEEECCC
Confidence 9999999999975 999999999999999999 999999999996 999999996
No 3
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=2.8e-172 Score=1361.84 Aligned_cols=431 Identities=49% Similarity=0.846 Sum_probs=417.6
Q ss_pred eeeccCccccccCCCCCcCCCCChHhhhccCcCCCCCCccccHHHHHHHHHHHHhccccccCCCCCCCCchhHHHHHHHh
Q 011618 26 CMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRL 105 (481)
Q Consensus 26 ~~~~~~G~~~l~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L 105 (481)
..+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||++|
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~----------~~l~Ky~~L~~L 82 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIE----------TPINKYQFLRNI 82 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCC----------ChHHHHHHHHHH
Confidence 3456799999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred hcccceeeeeeeccCcccccccccchhhHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeec
Q 011618 106 HDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILG 185 (481)
Q Consensus 106 ~~rNe~LFy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~rrprGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 185 (481)
|+|||+|||+++++|++||||||||||||+||++||++||+|||||||++|+|+|+++++|||.++|++|||||||||||
T Consensus 83 ~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILG 162 (559)
T PTZ00317 83 HDTNETLFYALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILG 162 (559)
T ss_pred hhcCchHHHHHHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccchhhhhhhhhcCCCCCceecEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhCCc
Q 011618 186 LGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPK 265 (481)
Q Consensus 186 LGDlG~~Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~ 265 (481)
|||+|++||||||||++|||+||||||++|||||||||||||+||+||+||||||+|++|++||+|+||||+||+++||+
T Consensus 163 LGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~P~ 242 (559)
T PTZ00317 163 LGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRWPN 242 (559)
T ss_pred cCCcccccccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCchHHHHHHHHhhcCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHH
Q 011618 266 AIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 266 ~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
++||||||+++|||+||+|||+++|||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||+++
T Consensus 243 ~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d---~riv~~GAGsAgiGia~ll~~~ 319 (559)
T PTZ00317 243 AVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEE---QRIVFFGAGSAAIGVANNIADL 319 (559)
T ss_pred eEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHcCCChhhhcCeEEEEeccceeecCCCC-CChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCH
Q 011618 346 AARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNE 424 (481)
Q Consensus 346 ~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~-l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~ 424 (481)
|+ ++|+|+|||++||||||++|||+++|++ |+++|++|||+.++..+ ....+|+|||+.+|||||||+|++||+|||
T Consensus 320 m~-~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~-~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~ 397 (559)
T PTZ00317 320 AA-EYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAED-SSLKTLEDVVRFVKPTALLGLSGVGGVFTE 397 (559)
T ss_pred HH-HcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhcccccccc-ccCCCHHHHHhccCCCEEEEecCCCCCCCH
Confidence 99 6899999999999999999999999965 99999999997532110 125799999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcccCCccccccCce
Q 011618 425 EVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYLMAARSSFLTSSF 475 (481)
Q Consensus 425 evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt~g~r~~f~~~~~ 475 (481)
|||++|++ +|+|||||||||||+++| |||||||+||+| |++|+|||+
T Consensus 398 evv~~Ma~-~~~rPIIFaLSNPt~~aE--~tpeda~~~T~G-rai~AtGsp 444 (559)
T PTZ00317 398 EVVKTMAS-NVERPIIFPLSNPTSKAE--CTAEDAYKWTNG-RAIVASGSP 444 (559)
T ss_pred HHHHHHHh-cCCCCEEEECCCCCCCCC--cCHHHHHhhccC-CEEEEECCC
Confidence 99999975 999999999999999999 999999999996 999999997
No 4
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=5.6e-170 Score=1348.82 Aligned_cols=425 Identities=58% Similarity=0.964 Sum_probs=415.5
Q ss_pred ccCccccccCCCCCcCCCCChHhhhccCcCCCCCCccccHHHHHHHHHHHHhccccccCCCCCCCCchhHHHHHHHhhcc
Q 011618 29 HKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDR 108 (481)
Q Consensus 29 ~~~G~~~l~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L~~r 108 (481)
..+|.++|+||.+|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||++||++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~~L~~L~~~ 108 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALE----------SPLAKYRALMDLQER 108 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccC----------CcHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cceeeeeeeccCcccccccccchhhHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCC
Q 011618 109 NETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGD 188 (481)
Q Consensus 109 Ne~LFy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~rrprGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGD 188 (481)
||+|||+++++|++||||||||||||+||++||++||+|||||||++|+|+|+++++|||.++|++||||||+|||||||
T Consensus 109 Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGD 188 (581)
T PLN03129 109 NERLFYRVLIDNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGD 188 (581)
T ss_pred CcccchhhhhcCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccchhhhhhhhhcCCCCCceecEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhC-CceE
Q 011618 189 LGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAI 267 (481)
Q Consensus 189 lG~~Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~-P~~~ 267 (481)
+|++||||||||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|+|||+|+||||++|+++| |+++
T Consensus 189 lG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~ 268 (581)
T PLN03129 189 LGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVL 268 (581)
T ss_pred cCCCccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEeecCCCchHHHHHHHHhhcCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHH
Q 011618 268 VQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAA 347 (481)
Q Consensus 268 IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~ 347 (481)
||||||+++|||+||+|||+++|||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||+++|+
T Consensus 269 I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d---~riv~~GAGsAgigia~ll~~~~~ 345 (581)
T PLN03129 269 VQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLAD---QRILFAGAGEAGTGIAELIALAMS 345 (581)
T ss_pred EehhhcCCccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhh---ceEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHcCCChhhhcCeEEEEeccceeecCCCC-CChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHH
Q 011618 348 RMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEV 426 (481)
Q Consensus 348 ~~~Gls~eeA~~~i~lvD~~GLi~~~r~~-l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~ev 426 (481)
+++|+|+|||++||||||++|||+++|++ |+++|++||++.+ +.++|+|||+++|||||||+|+++|+|||||
T Consensus 346 ~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~------~~~~L~e~v~~vkptvLIG~S~~~g~Ft~ev 419 (581)
T PLN03129 346 RQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE------PGASLLEAVKAIKPTVLIGLSGVGGTFTKEV 419 (581)
T ss_pred hhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc------cCCCHHHHHhccCCCEEEEecCCCCCCCHHH
Confidence 54699999999999999999999999976 9999999999853 3578999999999999999999999999999
Q ss_pred HHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcccCCccccccCcee
Q 011618 427 LKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYLMAARSSFLTSSFV 476 (481)
Q Consensus 427 v~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt~g~r~~f~~~~~~ 476 (481)
|++|++ +|+|||||||||||+++| |||||||+||+| |++|+||||.
T Consensus 420 i~~Ma~-~~~rPIIFaLSNPt~~~E--~~pe~a~~~T~G-~ai~AtGSPf 465 (581)
T PLN03129 420 LEAMAS-LNERPIIFALSNPTSKAE--CTAEEAYTWTGG-RAIFASGSPF 465 (581)
T ss_pred HHHHHh-cCCCCEEEECCCCCCCcC--cCHHHHHHhhcC-CEEEEeCCCC
Confidence 999975 999999999999999999 999999999996 9999999964
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=2.8e-91 Score=719.63 Aligned_cols=320 Identities=34% Similarity=0.506 Sum_probs=279.3
Q ss_pred cccHHHHHHHHHHHHhccccccCCCCCCCCchhHHHHHHHhhcccceeeeeeeccCcccccccccchhhHHHHHHHhhcc
Q 011618 65 VISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLF 144 (481)
Q Consensus 65 v~tle~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~ 144 (481)
|+|+| |.+|++.++..+.. .+|++|.|+ ++|+++||.++-.|..|+|||+||||||++|++|++.|
T Consensus 1 v~t~~-q~~~~~~~~~~~~~---------~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~ 66 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKT---------EALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDP 66 (432)
T ss_pred CccHH-HHHHHHHHHhhhhh---------hhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCc
Confidence 57899 99999999998872 489999999 99999999999999999999999999999999999888
Q ss_pred cCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCC-ccccccchhhhhhhhhcCCCCCceecEEeecc
Q 011618 145 RRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV-QGIGIPIGKLDVYVAAAGINPQRILPVMLDVG 223 (481)
Q Consensus 145 rrprGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~-~Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvG 223 (481)
++++ ++.+ ++++|||||||+|||||||||+ +||||||||++|||+||||| ++||+||+|
T Consensus 67 ~~~~----~yt~-------------~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~ 126 (432)
T COG0281 67 RKAY----SYTA-------------RGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVG 126 (432)
T ss_pred chhh----hcCC-------------CCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCC
Confidence 7775 2222 4469999999999999999995 99999999999999999999 999999999
Q ss_pred CCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEEEeecCCCchHHHHHHHHhhcCCccccCcchhHHHH
Q 011618 224 TNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVA 303 (481)
Q Consensus 224 TnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~ 303 (481)
|||+ +++||+++...||++.+|||||..-|+.+.+.|||.+||||||||||||+|+
T Consensus 127 ~~~e------------------------i~~~Vkal~p~FgginLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~ 182 (432)
T COG0281 127 TNNE------------------------IIEFVKALEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVT 182 (432)
T ss_pred ChHH------------------------HHHHHHHhhhcCCCcceeecccchhhHHHHHHhhcCCCCcccccccHHHHHH
Confidence 9875 6788888888888777777777555555555566667999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCC--CChhh
Q 011618 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN--LDPAA 381 (481)
Q Consensus 304 LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~--l~~~k 381 (481)
||||+||+|++|++|+| +||||+|||+||+|||+||+++|+ ++ ++|||||++|+|+++|++ +++.|
T Consensus 183 lA~llnalk~~gk~l~d---~kiv~~GAGAAgiaia~~l~~~g~-----~~----~~i~~~D~~G~l~~~r~~~~~~~~k 250 (432)
T COG0281 183 LAALLNALKLTGKKLKD---QKIVINGAGAAGIAIADLLVAAGV-----KE----ENIFVVDRKGLLYDGREDLTMNQKK 250 (432)
T ss_pred HHHHHHHHHHhCCCccc---eEEEEeCCcHHHHHHHHHHHHhCC-----Cc----ccEEEEecCCcccCCCcccccchHH
Confidence 99999999999999999 999999999999999999999866 22 799999999999999976 56677
Q ss_pred hcccc-ccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHH
Q 011618 382 APFAK-DPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFF 460 (481)
Q Consensus 382 ~~fA~-~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~ 460 (481)
..+|. +.++| .+ .+++. +||||||+|++ |+||+|+|++|+ ++||||||||||+ | ++||||.
T Consensus 251 ~~~a~~~~~~~------~~-~~~~~--~adv~iG~S~~-G~~t~e~V~~Ma----~~PiIfalaNP~p--E--i~Pe~a~ 312 (432)
T COG0281 251 YAKAIEDTGER------TL-DLALA--GADVLIGVSGV-GAFTEEMVKEMA----KHPIIFALANPTP--E--ITPEDAK 312 (432)
T ss_pred HHHHHhhhccc------cc-ccccc--CCCEEEEcCCC-CCcCHHHHHHhc----cCCEEeecCCCCc--c--CCHHHHh
Confidence 77775 44433 21 44554 49999999997 999999999996 4599999999998 9 9999999
Q ss_pred hcccC------Ccccccc
Q 011618 461 FYLMA------ARSSFLT 472 (481)
Q Consensus 461 ~wt~g------~r~~f~~ 472 (481)
+|++| |||+||+
T Consensus 313 ~~~~~aaivaTGrsd~Pn 330 (432)
T COG0281 313 EWGDGAAIVATGRSDYPN 330 (432)
T ss_pred hcCCCCEEEEeCCCCCcc
Confidence 99987 6777765
No 6
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=2e-86 Score=731.18 Aligned_cols=282 Identities=29% Similarity=0.448 Sum_probs=255.5
Q ss_pred eeeeeccCcccccccccchhhHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCCc
Q 011618 113 YYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQ 192 (481)
Q Consensus 113 Fy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~rrprGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~ 192 (481)
--++.+++.++ |.++|||||+++|+++. +|++.++++.. +.+.|+|||||||||||||+|++
T Consensus 30 ~~~~~~~~~~d-l~~~ytpgv~~~~~~i~-------------~~~~~~~~~t~----~~n~v~vvtdg~~vLGlGd~G~~ 91 (763)
T PRK12862 30 APTKPLANQRD-LALAYSPGVAAPCLEIA-------------ADPANAARYTS----RGNLVAVVSNGTAVLGLGNIGPL 91 (763)
T ss_pred EecCCCCCHHH-ceeeeCCchHHHHHHHH-------------hChHhhhhccc----CCcEEEEEechhhhccccccCcc
Confidence 37888899988 69999999999999986 56665554433 66899999999999999999997
Q ss_pred c-ccccchhhhhhhhhcCCCCCceecEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhCCce-EEEe
Q 011618 193 G-IGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQF 270 (481)
Q Consensus 193 G-m~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~-~Iqf 270 (481)
| |||||||++|||+||||| +||+||||+ || ||||++|+++||++ +|||
T Consensus 92 ~~~pv~egK~~l~~~~~gi~-------~~~i~~~~~----d~-------------------d~~v~~v~~~~p~f~~i~~ 141 (763)
T PRK12862 92 ASKPVMEGKAVLFKKFAGID-------VFDIELDES----DP-------------------DKLVEIVAALEPTFGGINL 141 (763)
T ss_pred cccchHHHHHHHHHhhcCCC-------ccccccCCC----CH-------------------HHHHHHHHHhCCCcceeee
Confidence 5 999999999999999999 555566664 75 99999999999994 9999
Q ss_pred ecCCCchHHHHHHHHhhc--CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHH
Q 011618 271 EDFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAAR 348 (481)
Q Consensus 271 EDf~~~naf~iL~ryr~~--~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~ 348 (481)
|||++||||+||+|||++ ||||||||||||+|+||||+||+|++||+|+| +||||+|||+||+|||+||+.
T Consensus 142 ED~~~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~---~~iv~~GaGaag~~~a~~l~~---- 214 (763)
T PRK12862 142 EDIKAPECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIED---VKLVASGAGAAALACLDLLVS---- 214 (763)
T ss_pred ecccCchHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhh---cEEEEEChhHHHHHHHHHHHH----
Confidence 999999999999999998 89999999999999999999999999999999 999999999999999999986
Q ss_pred HcCCChhhhcCeEEEEeccceeecCCCC-CChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHH
Q 011618 349 MAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVL 427 (481)
Q Consensus 349 ~~Gls~eeA~~~i~lvD~~GLi~~~r~~-l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv 427 (481)
.|+++ +||||||++|||+++|++ |+++|++||++++ ..+|+|||++ ||||||+|+ ||+||+|+|
T Consensus 215 -~G~~~----~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~-------~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v 279 (763)
T PRK12862 215 -LGVKR----ENIWVTDIKGVVYEGRTELMDPWKARYAQKTD-------ARTLAEVIEG--ADVFLGLSA-AGVLKPEMV 279 (763)
T ss_pred -cCCCc----ccEEEEcCCCeeeCCCCccccHHHHHHhhhcc-------cCCHHHHHcC--CCEEEEcCC-CCCCCHHHH
Confidence 48874 799999999999999975 9999999999853 3589999999 999999999 999999999
Q ss_pred HHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcccC-----Ccccccc
Q 011618 428 KAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYLMA-----ARSSFLT 472 (481)
Q Consensus 428 ~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt~g-----~r~~f~~ 472 (481)
++|+ +|||||||||||+ | |+|||||+||+| |||+||+
T Consensus 280 ~~M~----~~piifalsNP~~--E--~~p~~a~~~~~~~i~atGrs~~p~ 321 (763)
T PRK12862 280 KKMA----PRPLIFALANPTP--E--ILPEEARAVRPDAIIATGRSDYPN 321 (763)
T ss_pred HHhc----cCCEEEeCCCCcc--c--CCHHHHHHhcCCEEEEECCcCCCC
Confidence 9995 8999999999997 9 999999999996 5555554
No 7
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=2.1e-86 Score=728.48 Aligned_cols=282 Identities=30% Similarity=0.488 Sum_probs=257.3
Q ss_pred eeeeeccCcccccccccchhhHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCCc
Q 011618 113 YYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQ 192 (481)
Q Consensus 113 Fy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~rrprGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~ 192 (481)
--++.+.+.++ |+++||||||++|++ |+++|+++| ++.+++ +.|+|||||+|||||||+|++
T Consensus 22 ~~~~~~~~~~d-l~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~ 83 (752)
T PRK07232 22 TPTKPLATQRD-LSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGAL 83 (752)
T ss_pred EeccccCChhh-cceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccc
Confidence 37788889988 699999999999995 467888888 666655 469999999999999999997
Q ss_pred -cccccchhhhhhhhhcCCCCCceecEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhCCce-EEEe
Q 011618 193 -GIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQF 270 (481)
Q Consensus 193 -Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~-~Iqf 270 (481)
||||||||++|||+||||| ++|+||||+ | +||||++|+.+||++ +|||
T Consensus 84 a~~pv~egK~~l~~~~~gid-------~~~i~~~~~----d-------------------~de~v~~v~~~~p~~g~i~~ 133 (752)
T PRK07232 84 ASKPVMEGKGVLFKKFAGID-------VFDIEVDEE----D-------------------PDKFIEAVAALEPTFGGINL 133 (752)
T ss_pred cCccHHHHHHHHHHhhcCCC-------ccccccCCC----C-------------------HHHHHHHHHHhCCCccEEee
Confidence 9999999999999999999 556666664 4 799999999999997 9999
Q ss_pred ecCCCchHHHHHHHHhhc--CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHH
Q 011618 271 EDFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAAR 348 (481)
Q Consensus 271 EDf~~~naf~iL~ryr~~--~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~ 348 (481)
|||++||||+||+|||++ ||||||||||||+|+||||+||+|++|++|+| +||||+|||+||+|||+||+.
T Consensus 134 ED~~~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~---~~iv~~GaGaag~~~a~~l~~---- 206 (752)
T PRK07232 134 EDIKAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIED---VKIVVSGAGAAAIACLNLLVA---- 206 (752)
T ss_pred eecCCchHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECccHHHHHHHHHHHH----
Confidence 999999999999999998 79999999999999999999999999999999 999999999999999999986
Q ss_pred HcCCChhhhcCeEEEEeccceeecCC-CCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHH
Q 011618 349 MAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVL 427 (481)
Q Consensus 349 ~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv 427 (481)
.|++ ++||||||++|||+++| ++|+++|++||++++ ..+|+|||++ ||||||+|+ ||+||+|+|
T Consensus 207 -~G~~----~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~-------~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v 271 (752)
T PRK07232 207 -LGAK----KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTD-------ARTLAEAIEG--ADVFLGLSA-AGVLTPEMV 271 (752)
T ss_pred -cCCC----cccEEEEcCCCeecCCCcccccHHHHHHhccCC-------CCCHHHHHcC--CCEEEEcCC-CCCCCHHHH
Confidence 4887 58999999999999999 579999999999843 3589999999 999999999 999999999
Q ss_pred HHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcccC-----Ccccccc
Q 011618 428 KAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYLMA-----ARSSFLT 472 (481)
Q Consensus 428 ~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt~g-----~r~~f~~ 472 (481)
++|+ +|||||||||||| | |+|||||+||+| |||+||+
T Consensus 272 ~~M~----~~piifalsNP~~--E--~~p~~a~~~~~~~i~atGrs~~pn 313 (752)
T PRK07232 272 KSMA----DNPIIFALANPDP--E--ITPEEAKAVRPDAIIATGRSDYPN 313 (752)
T ss_pred HHhc----cCCEEEecCCCCc--c--CCHHHHHHhcCCEEEEECCcCCCC
Confidence 9995 6999999999998 9 999999999996 5666554
No 8
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=4.5e-85 Score=717.79 Aligned_cols=283 Identities=28% Similarity=0.459 Sum_probs=254.1
Q ss_pred eeeeeccCcccccccccchhhHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCCc
Q 011618 113 YYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQ 192 (481)
Q Consensus 113 Fy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~rrprGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~ 192 (481)
--++.+.+.++ |.++|||||+++|+++ +++|+++| ++.+ +.+.|+|||||||||||||+|++
T Consensus 26 ~~~~~~~~~~d-l~l~YtPgVa~~c~~i---~~~p~~~~-~~t~-------------r~n~v~VvtdG~~vLGLGdiG~~ 87 (764)
T PRK12861 26 VASKPLVTQRD-LALAYTPGVASACEEI---AADPLNAF-RFTS-------------RGNLVGVITNGTAVLGLGNIGAL 87 (764)
T ss_pred EeccccCChHH-ceeecCCchHHHHHHH---HhChHhhh-hhhc-------------cCcEEEEEecchhhccCCCcCcc
Confidence 37888899988 6999999999999995 56665553 3333 44679999999999999999997
Q ss_pred c-ccccchhhhhhhhhcCCCCCceecEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEEEee
Q 011618 193 G-IGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFE 271 (481)
Q Consensus 193 G-m~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~IqfE 271 (481)
| |||||||++|||+||||| ++|+|||| +|| |+|| |||++++..||+ ||||
T Consensus 88 a~~pvmeGK~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~--i~lE 138 (764)
T PRK12861 88 ASKPVMEGKAVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG--INLE 138 (764)
T ss_pred cccchHHHHHHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC--ceee
Confidence 5 999999999999999999 67777777 787 7888 999999999988 9999
Q ss_pred cCCCchHHHHHHHHhhc--CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHH
Q 011618 272 DFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARM 349 (481)
Q Consensus 272 Df~~~naf~iL~ryr~~--~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~ 349 (481)
||++||||+||+|||++ ||||||||||||+|+||||+||+|++|++|+| +||||+|||+||+|||++|+.
T Consensus 139 D~~~p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d---~~iv~~GAGaAg~~ia~~l~~----- 210 (764)
T PRK12861 139 DIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKE---VKVVTSGAGAAALACLDLLVD----- 210 (764)
T ss_pred eccCchHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhH---cEEEEECHhHHHHHHHHHHHH-----
Confidence 99999999999999994 99999999999999999999999999999999 999999999999999999865
Q ss_pred cCCChhhhcCeEEEEeccceeecCCCC-CChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 011618 350 AGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (481)
Q Consensus 350 ~Gls~eeA~~~i~lvD~~GLi~~~r~~-l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (481)
.|+++| ||||||++|||+++|++ |+++|++||++++ ..+|+|||++ ||||||+|+ ||+||+|+|+
T Consensus 211 ~G~~~~----~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~-------~~~L~eai~~--advliG~S~-~g~ft~e~v~ 276 (764)
T PRK12861 211 LGLPVE----NIWVTDIEGVVYRGRTTLMDPDKERFAQETD-------ARTLAEVIGG--ADVFLGLSA-GGVLKAEMLK 276 (764)
T ss_pred cCCChh----hEEEEcCCCeeeCCCcccCCHHHHHHHhhcC-------CCCHHHHHhc--CCEEEEcCC-CCCCCHHHHH
Confidence 588864 99999999999999975 9999999999853 3589999999 899999998 9999999999
Q ss_pred HhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcccCCccccccCc
Q 011618 429 AMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYLMAARSSFLTSS 474 (481)
Q Consensus 429 ~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt~g~r~~f~~~~ 474 (481)
+|+ +|||||||||||| | |+||||++ |+| |++|+||.
T Consensus 277 ~Ma----~~PIIFaLsNPtp--E--~~pe~a~~-~~g-~aivaTGr 312 (764)
T PRK12861 277 AMA----ARPLILALANPTP--E--IFPELAHA-TRD-DVVIATGR 312 (764)
T ss_pred Hhc----cCCEEEECCCCCc--c--CCHHHHHh-cCC-CEEEEeCC
Confidence 996 5999999999998 9 99999987 875 66666654
No 9
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=1.1e-84 Score=611.32 Aligned_cols=181 Identities=61% Similarity=1.125 Sum_probs=163.0
Q ss_pred hcccceeeeeeeccCcccccccccchhhHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeec
Q 011618 106 HDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILG 185 (481)
Q Consensus 106 ~~rNe~LFy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~rrprGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 185 (481)
|++||+|||+++.+|++|+||||||||||+||++||++||+|+|||+|++|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccchhhhhhhhhcCCCCCceecEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhC-C
Q 011618 186 LGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-P 264 (481)
Q Consensus 186 LGDlG~~Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~-P 264 (481)
|||+|++|||||+||++|||+||||||++|||||||+||||++||+||+|+|+||+|++|++|++||||||+||+++| |
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ceEEEeecCCCchHHHHHHHHh
Q 011618 265 KAIVQFEDFQMKWAFETLERYR 286 (481)
Q Consensus 265 ~~~IqfEDf~~~naf~iL~ryr 286 (481)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=2e-61 Score=474.96 Aligned_cols=170 Identities=44% Similarity=0.711 Sum_probs=152.0
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCC
Q 011618 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (481)
Q Consensus 296 iQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~ 375 (481)
|||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|++||++||||+|++|||+++|+
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d---~riv~~GAGsAg~gia~ll~~~~~-~~G~~~~eA~~~i~lvD~~Gll~~~r~ 76 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSD---QRIVFFGAGSAGIGIARLLVAAMV-REGLSEEEARKRIWLVDSKGLLTDDRE 76 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG----EEEEEB-SHHHHHHHHHHHHHHH-CTTS-HHHHHTTEEEEETTEEEBTTTS
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHH---cEEEEeCCChhHHHHHHHHHHHHH-HhcCCHHHHhccEEEEeccceEeccCc
Confidence 8999999999999999999999999 999999999999999999999999 789999999999999999999999999
Q ss_pred CCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCC
Q 011618 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCC 455 (481)
Q Consensus 376 ~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t 455 (481)
+|+++|++|||+.+++. ...+|+|+|+++|||||||+|+++|+||||||++|++ +|||||||||||||+++| ||
T Consensus 77 ~l~~~~~~~a~~~~~~~---~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~-~~erPIIF~LSNPt~~aE--~~ 150 (255)
T PF03949_consen 77 DLNPHKKPFARKTNPEK---DWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAK-HNERPIIFPLSNPTPKAE--CT 150 (255)
T ss_dssp SHSHHHHHHHBSSSTTT-----SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHH-HSSSEEEEE-SSSCGGSS--S-
T ss_pred cCChhhhhhhccCcccc---cccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhc-cCCCCEEEECCCCCCccc--CC
Confidence 99999999999987642 2479999999999999999999999999999999985 999999999999999999 99
Q ss_pred HHHHHhcccCCccccccCcee
Q 011618 456 VTTFFFYLMAARSSFLTSSFV 476 (481)
Q Consensus 456 ~eda~~wt~g~r~~f~~~~~~ 476 (481)
|||||+||+| |++|+||||+
T Consensus 151 peda~~~t~g-~ai~AtGSpf 170 (255)
T PF03949_consen 151 PEDAYEWTDG-RAIFATGSPF 170 (255)
T ss_dssp HHHHHHTTTS-EEEEEESS--
T ss_pred HHHHHhhCCc-eEEEecCCcc
Confidence 9999999996 9999999985
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=1.2e-59 Score=461.98 Aligned_cols=168 Identities=35% Similarity=0.554 Sum_probs=160.0
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCC
Q 011618 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (481)
Q Consensus 296 iQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~ 375 (481)
|||||+|+|||||||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+|||++|||++|++|||+++|+
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d---~riv~~GAGsAg~gia~ll~~~~~-~~Gls~e~A~~~i~~vD~~Gll~~~r~ 76 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISE---HKVLFNGAGAAALGIANLIVXLXV-KEGISKEEACKRIWXVDRKGLLVKNRK 76 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhh---cEEEEECcCHHHHHHHHHHHHHHH-hcCCCHHHHhccEEEECCCCeEeCCCC
Confidence 8999999999999999999999999 999999999999999999999999 689999999999999999999999998
Q ss_pred CCChhhhc---cccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCC
Q 011618 376 NLDPAAAP---FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLF 452 (481)
Q Consensus 376 ~l~~~k~~---fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~ 452 (481)
+++++|++ |+++.+ +..+|+|+|+.+|||||||+|++||+||+|+|++|++ +|+|||||||||||+++|
T Consensus 77 ~l~~~~~~~~~~~~~~~------~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~-~~~~PIIFaLSNPt~~aE- 148 (254)
T cd00762 77 ETCPNEYHLARFANPER------ESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAE-INERPVIFALSNPTSKAE- 148 (254)
T ss_pred ccCHHHHHHHHHcCccc------ccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhh-cCCCCEEEECCCcCCccc-
Confidence 89999999 777642 3578999999999999999999999999999999975 999999999999999999
Q ss_pred CCCHHHHHhcccCCccccccCceeE
Q 011618 453 SCCVTTFFFYLMAARSSFLTSSFVF 477 (481)
Q Consensus 453 ~~t~eda~~wt~g~r~~f~~~~~~~ 477 (481)
|||||||+||+| |++|+|||+.+
T Consensus 149 -~tpe~a~~~t~G-~ai~AtGspf~ 171 (254)
T cd00762 149 -CTAEEAYTATEG-RAIFASGSPFH 171 (254)
T ss_pred -cCHHHHHhhcCC-CEEEEECCCCC
Confidence 999999999996 99999999764
No 12
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=4.9e-59 Score=463.13 Aligned_cols=169 Identities=49% Similarity=0.791 Sum_probs=161.3
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCC
Q 011618 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (481)
Q Consensus 296 iQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~ 375 (481)
|||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+|||+++|||+|++|||+++|+
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d---~~iv~~GAGsAg~gia~ll~~~~~-~~G~~~eeA~~~i~~vD~~Gll~~~r~ 76 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSD---QRILFLGAGSAGIGIADLIVSAMV-REGLSEEEARKKIWLVDSKGLLTKDRK 76 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhh---cEEEEECcCHHHHHHHHHHHHHHH-HcCCChhhccCeEEEEcCCCeEeCCCC
Confidence 8999999999999999999999999 999999999999999999999999 689999999999999999999999998
Q ss_pred CCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCC
Q 011618 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCC 455 (481)
Q Consensus 376 ~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t 455 (481)
+|+++|++||++.++ .+.++|+|+|+.+|||+|||+|+++|+||+|+|++|++ +|+|||||||||||+++| ||
T Consensus 77 ~l~~~~~~~a~~~~~----~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~-~~~~PIIFaLSNPt~~~E--~~ 149 (279)
T cd05312 77 DLTPFKKPFARKDEE----KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAK-SNERPIIFALSNPTSKAE--CT 149 (279)
T ss_pred cchHHHHHHHhhcCc----ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHh-cCCCCEEEECCCcCCccc--cC
Confidence 899999999998653 24579999999999999999999999999999999975 999999999999999999 99
Q ss_pred HHHHHhcccCCccccccCcee
Q 011618 456 VTTFFFYLMAARSSFLTSSFV 476 (481)
Q Consensus 456 ~eda~~wt~g~r~~f~~~~~~ 476 (481)
|||||+||+| |++|+||||.
T Consensus 150 pe~a~~~t~G-~ai~ATGsPf 169 (279)
T cd05312 150 AEDAYKWTDG-RALFASGSPF 169 (279)
T ss_pred HHHHHHhhcC-CEEEEeCCCC
Confidence 9999999996 9999999863
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=99.97 E-value=1.7e-30 Score=251.03 Aligned_cols=149 Identities=30% Similarity=0.507 Sum_probs=129.9
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCC
Q 011618 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (481)
Q Consensus 296 iQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~ 375 (481)
|||||+|++||+++|+|..|+++++ +||||+|||+||.|||++|.. .|++ +++||++|++|+++.+|.
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~---~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~ 68 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEE---VKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGRE 68 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccC---CEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccc
Confidence 7999999999999999999999999 999999999999999999965 4766 579999999999999984
Q ss_pred -CCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCC
Q 011618 376 -NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSC 454 (481)
Q Consensus 376 -~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~ 454 (481)
+|.++|++|+++.+. . ....+|.|++++ ||+|||+|+ +|.||+++++.|+ ++||||+||||++ | |
T Consensus 69 ~~L~~~~~~la~~~~~-~--~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~----~~~ivf~lsnP~~--e--~ 134 (226)
T cd05311 69 DDLNPDKNEIAKETNP-E--KTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA----KDPIVFALANPVP--E--I 134 (226)
T ss_pred hhhhHHHHHHHHHhcc-C--cccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC----CCCEEEEeCCCCC--c--C
Confidence 599999999986531 1 111479899987 999999999 8999999999994 7999999999997 9 9
Q ss_pred CHHHHHhcccCCccccccC
Q 011618 455 CVTTFFFYLMAARSSFLTS 473 (481)
Q Consensus 455 t~eda~~wt~g~r~~f~~~ 473 (481)
++++|++| | -.+|++|
T Consensus 135 ~~~~A~~~--g-a~i~a~G 150 (226)
T cd05311 135 WPEEAKEA--G-ADIVATG 150 (226)
T ss_pred CHHHHHHc--C-CcEEEeC
Confidence 99999999 3 1256666
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.85 E-value=2.3e-08 Score=82.92 Aligned_cols=86 Identities=26% Similarity=0.361 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCC
Q 011618 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (481)
Q Consensus 298 GTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 377 (481)
+||.++++++..+.+..+.+++. .+++|+|+|.+|.+++..+.+.. -++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~---~~v~i~G~G~~g~~~a~~l~~~~-----------~~~v~v~~r----------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKG---KTVVVLGAGEVGKGIAKLLADEG-----------GKKVVLCDR----------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCC---CEEEEECCCHHHHHHHHHHHHcC-----------CCEEEEEcC-----------
Confidence 69999999999999999988888 99999999999999999987642 157999888
Q ss_pred ChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
|++|++++.++.|+++.++.| ++.|+||.++
T Consensus 56 --------------------------------di~i~~~~~~~~~~~~~~~~~----~~~~~v~~~a 86 (86)
T cd05191 56 --------------------------------DILVTATPAGVPVLEEATAKI----NEGAVVIDLA 86 (86)
T ss_pred --------------------------------CEEEEcCCCCCCchHHHHHhc----CCCCEEEecC
Confidence 999999999999998855555 5799999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.85 E-value=0.00037 Score=74.47 Aligned_cols=161 Identities=20% Similarity=0.251 Sum_probs=106.6
Q ss_pred CCChhhhhHhHHHHHHHHHHhCCceEEEeecCCCchHHHH---------------------HHHHhh-------cCCccc
Q 011618 242 RLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFET---------------------LERYRK-------RFCMFN 293 (481)
Q Consensus 242 R~~g~~Y~~~vdefv~av~~~~P~~~IqfEDf~~~naf~i---------------------L~ryr~-------~~~~FN 293 (481)
..+-+||...+++.+ ...-|+.+| |.+..-...+ ..||+. .+|+||
T Consensus 105 ~~~~~ey~~~~~~~l---~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~ 178 (425)
T PRK05476 105 GETLEEYWECIERAL---DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAIN 178 (425)
T ss_pred CCCHHHHHHHHHHHh---cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEEe
Confidence 346677877776665 122366666 6665555444 245543 389998
Q ss_pred ----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEE
Q 011618 294 ----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFL 363 (481)
Q Consensus 294 ----------DDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~l 363 (481)
|-..||+--++-|+.. .++..+.. .+++|+|+|..|.++|..+... |. ++++
T Consensus 179 vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~G---k~VlViG~G~IG~~vA~~lr~~-----Ga-------~ViV 240 (425)
T PRK05476 179 VNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAG---KVVVVAGYGDVGKGCAQRLRGL-----GA-------RVIV 240 (425)
T ss_pred cCCcccCccccccHHHHhhhHHHHHH---hccCCCCC---CEEEEECCCHHHHHHHHHHHhC-----CC-------EEEE
Confidence 7778998877766654 34555666 9999999999999999888654 32 6888
Q ss_pred EeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEec
Q 011618 364 LDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAM 443 (481)
Q Consensus 364 vD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaL 443 (481)
+|.+- .+...|.... ....++.++++. .|++|-+++.+++|+.+.++.|. +.-|++-.
T Consensus 241 ~d~dp-----------~ra~~A~~~G-----~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK----~GailiNv 298 (425)
T PRK05476 241 TEVDP-----------ICALQAAMDG-----FRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK----DGAILANI 298 (425)
T ss_pred EcCCc-----------hhhHHHHhcC-----CEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC----CCCEEEEc
Confidence 87631 1111111111 012358888886 89999988877889999999993 44577767
Q ss_pred CCCCC
Q 011618 444 SNPTM 448 (481)
Q Consensus 444 SNPt~ 448 (481)
+-+..
T Consensus 299 G~~d~ 303 (425)
T PRK05476 299 GHFDN 303 (425)
T ss_pred CCCCC
Confidence 76655
No 16
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.36 E-value=0.0036 Score=66.73 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=88.2
Q ss_pred cCCccc----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhh
Q 011618 288 RFCMFN----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (481)
Q Consensus 288 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA 357 (481)
.+|+++ |.-.||+--++-+++ |.++..+.. .+++|+|+|..|.++|..+... |
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~G---k~VvViG~G~IG~~vA~~ak~~-----G------ 218 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAG---KTVVVAGYGWCGKGIAMRARGM-----G------ 218 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCc---CEEEEECCCHHHHHHHHHHhhC-----c------
Confidence 378887 778899977776655 456665666 9999999999999999987653 3
Q ss_pred cCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCC
Q 011618 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 437 (481)
Q Consensus 358 ~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~er 437 (481)
-+++.+|.+- .+...|+... ....++.|+++. .|++|-+++.+++++++.+..|. +.
T Consensus 219 -a~ViV~d~dp-----------~r~~~A~~~G-----~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK----~G 275 (406)
T TIGR00936 219 -ARVIVTEVDP-----------IRALEAAMDG-----FRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK----DG 275 (406)
T ss_pred -CEEEEEeCCh-----------hhHHHHHhcC-----CEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC----CC
Confidence 2588787531 1111222111 012357888876 89999888878889998998883 45
Q ss_pred CEEEecCCCCCCCCCCCCHHHHH
Q 011618 438 PAIFAMSNPTMNGLFSCCVTTFF 460 (481)
Q Consensus 438 PIIFaLSNPt~~aE~~~t~eda~ 460 (481)
-||.-.+-... | +..++..
T Consensus 276 ailiN~G~~~~--e--Id~~aL~ 294 (406)
T TIGR00936 276 AIVANIGHFDV--E--IDVKALE 294 (406)
T ss_pred cEEEEECCCCc--e--eCHHHHH
Confidence 67776777654 5 5555443
No 17
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.17 E-value=0.0021 Score=68.59 Aligned_cols=130 Identities=19% Similarity=0.269 Sum_probs=91.6
Q ss_pred cCCccc----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhh
Q 011618 288 RFCMFN----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (481)
Q Consensus 288 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA 357 (481)
.+|+|+ |...||+--++-+++. .++..+.. .+++|+|+|..|.++|..+... |.
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~G---ktVvViG~G~IG~~va~~ak~~-----Ga----- 226 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAG---KVAVVAGYGDVGKGCAQSLRGQ-----GA----- 226 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-----
Confidence 378874 7788999988877765 55666666 9999999999999999877654 42
Q ss_pred cCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCC
Q 011618 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 437 (481)
Q Consensus 358 ~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~er 437 (481)
+++++|.+ +.+..+|+... ....++.|+++. .|++|-+++.+++|+++.++.|. ..
T Consensus 227 --~ViV~d~d-----------~~R~~~A~~~G-----~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk----~G 282 (413)
T cd00401 227 --RVIVTEVD-----------PICALQAAMEG-----YEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK----DG 282 (413)
T ss_pred --EEEEEECC-----------hhhHHHHHhcC-----CEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC----CC
Confidence 57767752 22333444321 012346788876 79999999888899999999983 45
Q ss_pred CEEEecCCCCCCCCCCCCHHHHHh
Q 011618 438 PAIFAMSNPTMNGLFSCCVTTFFF 461 (481)
Q Consensus 438 PIIFaLSNPt~~aE~~~t~eda~~ 461 (481)
-+|.-.+.+. .| +.+.+...
T Consensus 283 gilvnvG~~~--~e--Id~~~L~~ 302 (413)
T cd00401 283 AIVCNIGHFD--VE--IDVKGLKE 302 (413)
T ss_pred cEEEEeCCCC--Cc--cCHHHHHh
Confidence 5666667663 47 77776553
No 18
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.09 E-value=0.0053 Score=60.02 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
||-=+..++-.+++..+.+|+. .||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. .|+
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g---~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~--Gld 65 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEG---LTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP--GIT 65 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC--CCC
Confidence 4444556677778888876666 9999999999999999999864 32 578899999988877 565
Q ss_pred hhh-hccccccCCcCCcC--CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCC-CCCCCCCCC
Q 011618 379 PAA-APFAKDPGDFMGLR--EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNGLFSC 454 (481)
Q Consensus 379 ~~k-~~fA~~~~~~~~~~--~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN-Pt~~aE~~~ 454 (481)
..+ ..+++........+ +..+ .+.+..++.||||=++. .+..|++..+.+ .-++|..-+| |++. |
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~DVlipaA~-~~~i~~~~a~~l-----~a~~V~e~AN~p~t~-~--- 134 (217)
T cd05211 66 TEELINYAVALGGSARVKVQDYFP-GEAILGLDVDIFAPCAL-GNVIDLENAKKL-----KAKVVAEGANNPTTD-E--- 134 (217)
T ss_pred HHHHHHHHHhhCCccccCcccccC-cccceeccccEEeeccc-cCccChhhHhhc-----CccEEEeCCCCCCCH-H---
Confidence 532 22222211100000 1111 13344568999998776 799999999998 3678887777 6663 5
Q ss_pred CHHHHH
Q 011618 455 CVTTFF 460 (481)
Q Consensus 455 t~eda~ 460 (481)
+++.+
T Consensus 135 -a~~~L 139 (217)
T cd05211 135 -ALRIL 139 (217)
T ss_pred -HHHHH
Confidence 55554
No 19
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.06 E-value=0.0041 Score=65.91 Aligned_cols=122 Identities=22% Similarity=0.336 Sum_probs=80.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCC
Q 011618 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (481)
Q Consensus 297 QGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 376 (481)
.+..+|+.+++--|.+..+. +.+ .+++|+|+|..|..++..+... |. .+|+++|+.. .+
T Consensus 158 ~~~vSv~~~Av~la~~~~~~-l~~---~~VlViGaG~iG~~~a~~L~~~-----G~------~~V~v~~rs~----~r-- 216 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFGS-LKG---KKALLIGAGEMGELVAKHLLRK-----GV------GKILIANRTY----ER-- 216 (417)
T ss_pred CCCcCHHHHHHHHHHHHhCC-ccC---CEEEEECChHHHHHHHHHHHHC-----CC------CEEEEEeCCH----HH--
Confidence 55666777776666666553 444 8999999999999999888653 43 4788888731 11
Q ss_pred CChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCC-EEEecCCCCC
Q 011618 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKP-AIFAMSNPTM 448 (481)
Q Consensus 377 l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~~erP-IIFaLSNPt~ 448 (481)
...+|+.... .. ....++.+++.. .|++|-+++.+ ..+++++++.+.. ...+| +|+-+++|-.
T Consensus 217 ----a~~la~~~g~-~~-i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~-~~~~~~~viDla~Prd 281 (417)
T TIGR01035 217 ----AEDLAKELGG-EA-VKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALR-ERTRPLFIIDIAVPRD 281 (417)
T ss_pred ----HHHHHHHcCC-eE-eeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHh-cCCCCeEEEEeCCCCC
Confidence 1223332110 00 012357888877 89999987654 5689999998742 11256 8899999975
No 20
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.05 E-value=0.004 Score=63.30 Aligned_cols=138 Identities=20% Similarity=0.250 Sum_probs=86.8
Q ss_pred chHHHHHHHHhhcCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChh
Q 011618 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (481)
Q Consensus 276 ~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~e 355 (481)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|....|. +.. .+|+|+|+|..|..+++.+... |.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~---~~V~ViGaG~iG~~~a~~L~~~-----g~--- 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKG---KKVLVIGAGEMGELAAKHLAAK-----GV--- 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccC---CEEEEECcHHHHHHHHHHHHHc-----CC---
Confidence 56777777777765444 33455666666555555554 555 9999999999999998888652 32
Q ss_pred hhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCC
Q 011618 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDS 435 (481)
Q Consensus 356 eA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~ 435 (481)
++|+++|+. . +....+|+...... ....++.++++. +|++|-+++.+.. +++++.+.+...
T Consensus 203 ---~~V~v~~r~----~------~ra~~la~~~g~~~--~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~ 263 (311)
T cd05213 203 ---AEITIANRT----Y------ERAEELAKELGGNA--VPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRS 263 (311)
T ss_pred ---CEEEEEeCC----H------HHHHHHHHHcCCeE--EeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCC
Confidence 579988873 1 11122333211000 011347788877 8999999886555 676776643121
Q ss_pred -CCCEEEecCCCCC
Q 011618 436 -VKPAIFAMSNPTM 448 (481)
Q Consensus 436 -erPIIFaLSNPt~ 448 (481)
..-+|+=||||-.
T Consensus 264 ~~~~~viDlavPrd 277 (311)
T cd05213 264 GKPRLIVDLAVPRD 277 (311)
T ss_pred CCCeEEEEeCCCCC
Confidence 2347789999976
No 21
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.93 E-value=0.0032 Score=65.65 Aligned_cols=114 Identities=20% Similarity=0.257 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCC
Q 011618 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (481)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 377 (481)
|+++...++--|.+..|..|++ .+++|.|| |+.|..+|++|... .|. +++++++++ ...+
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~---k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~------~~rl 194 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSK---ATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ------QERL 194 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCC---CEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC------HHHH
Confidence 7888888888888888887777 99999999 89999999998752 222 478888763 1123
Q ss_pred ChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCC--CCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV--FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~--Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
...+.++... +..++.+++.. +|++|-+++.+.. ++++.++ +.-+|+=++.|-.
T Consensus 195 ~~La~el~~~--------~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l~-------~~~~viDiAvPRD 250 (340)
T PRK14982 195 QELQAELGGG--------KILSLEEALPE--ADIVVWVASMPKGVEIDPETLK-------KPCLMIDGGYPKN 250 (340)
T ss_pred HHHHHHhccc--------cHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHhC-------CCeEEEEecCCCC
Confidence 3333333211 12358888887 9999988876443 6765441 2345666888865
No 22
>PLN02494 adenosylhomocysteinase
Probab=96.84 E-value=0.0083 Score=65.20 Aligned_cols=125 Identities=18% Similarity=0.263 Sum_probs=88.0
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC
Q 011618 294 DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE 373 (481)
Q Consensus 294 DDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~ 373 (481)
|-..||+--++-|++ |.++..+.. .+++|+|.|..|.++|+.+... |. +++.+|.+.
T Consensus 231 Dn~yGtgqS~~d~i~---r~t~i~LaG---KtVvViGyG~IGr~vA~~aka~-----Ga-------~VIV~e~dp----- 287 (477)
T PLN02494 231 DNLYGCRHSLPDGLM---RATDVMIAG---KVAVICGYGDVGKGCAAAMKAA-----GA-------RVIVTEIDP----- 287 (477)
T ss_pred hccccccccHHHHHH---HhcCCccCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCc-----
Confidence 557888888888877 456766666 9999999999999999998543 42 577777631
Q ss_pred CCCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCC
Q 011618 374 RKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFS 453 (481)
Q Consensus 374 r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~ 453 (481)
.+...|.... ....++.|+++. .|++|=+++..++++++.++.|. +..++.-.+.+.. |
T Consensus 288 ------~r~~eA~~~G-----~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK----~GAiLiNvGr~~~--e-- 346 (477)
T PLN02494 288 ------ICALQALMEG-----YQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK----NNAIVCNIGHFDN--E-- 346 (477)
T ss_pred ------hhhHHHHhcC-----CeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC----CCCEEEEcCCCCC--c--
Confidence 1111121110 011258888877 89999877767888999999993 5778888888766 6
Q ss_pred CCHHHHHhc
Q 011618 454 CCVTTFFFY 462 (481)
Q Consensus 454 ~t~eda~~w 462 (481)
+..++..++
T Consensus 347 ID~~aL~~~ 355 (477)
T PLN02494 347 IDMLGLETY 355 (477)
T ss_pred cCHHHHhhc
Confidence 666665555
No 23
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.79 E-value=0.0069 Score=64.19 Aligned_cols=122 Identities=20% Similarity=0.280 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCC
Q 011618 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (481)
Q Consensus 298 GTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 377 (481)
+..+|+.+|+--|.+..+ ++.. .+++|+|||..|..++..+.. .|. ++|+++|+.. .+
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~---~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~~----~r--- 218 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSG---KKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRTL----ER--- 218 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccC---CEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCCH----HH---
Confidence 355666666554444444 3555 899999999999999888764 343 5788888741 11
Q ss_pred ChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcC-CCCCEEEecCCCCC
Q 011618 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESD-SVKPAIFAMSNPTM 448 (481)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~-~erPIIFaLSNPt~ 448 (481)
...+|+.... . .....++.+++.. +|++|.+++.+ ..+++++++.+...- ....+|+=||+|-.
T Consensus 219 ---a~~la~~~g~-~-~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prd 284 (423)
T PRK00045 219 ---AEELAEEFGG-E-AIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRD 284 (423)
T ss_pred ---HHHHHHHcCC-c-EeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCC
Confidence 1223322110 0 0012346777876 89999988765 568999999874211 12358889999975
No 24
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.75 E-value=0.044 Score=59.70 Aligned_cols=123 Identities=19% Similarity=0.225 Sum_probs=83.0
Q ss_pred CCccccCcchhHHHH-------HHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeE
Q 011618 289 FCMFNDDIQGTAGVA-------LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (481)
Q Consensus 289 ~~~FNDDiQGTaaV~-------LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i 361 (481)
+|++|=+---|-.+. ++.+-+.+|.++..|.. .+++|+|.|..|.++|+.+... |. ++
T Consensus 216 iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaG---KtVgVIG~G~IGr~vA~rL~a~-----Ga-------~V 280 (476)
T PTZ00075 216 FPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAG---KTVVVCGYGDVGKGCAQALRGF-----GA-------RV 280 (476)
T ss_pred ceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EE
Confidence 788886555444433 44445556777776666 9999999999999999988653 32 57
Q ss_pred EEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEE
Q 011618 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (481)
Q Consensus 362 ~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIF 441 (481)
+++|++-. + ...|.... ....++.|+++. .|++|-+.+..++|+++.++.|. +.-|+.
T Consensus 281 iV~e~dp~----~-------a~~A~~~G-----~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK----pGAiLI 338 (476)
T PTZ00075 281 VVTEIDPI----C-------ALQAAMEG-----YQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK----NNAIVG 338 (476)
T ss_pred EEEeCCch----h-------HHHHHhcC-----ceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC----CCcEEE
Confidence 77766311 1 00011100 012468899887 89999888878999999999994 566776
Q ss_pred ecCCCCC
Q 011618 442 AMSNPTM 448 (481)
Q Consensus 442 aLSNPt~ 448 (481)
-.+....
T Consensus 339 NvGr~d~ 345 (476)
T PTZ00075 339 NIGHFDN 345 (476)
T ss_pred EcCCCch
Confidence 6666643
No 25
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.75 E-value=0.00081 Score=60.34 Aligned_cols=108 Identities=19% Similarity=0.325 Sum_probs=67.3
Q ss_pred CCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcC
Q 011618 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (481)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (481)
+.+.+|++.|++|+|||.+|-+++..|... |. ++|++++|. .+| .......|. ...+. ..
T Consensus 5 ~~~~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r--a~~l~~~~~--~~~~~-~~ 64 (135)
T PF01488_consen 5 KKFGDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER--AEALAEEFG--GVNIE-AI 64 (135)
T ss_dssp THHSTGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH--HHHHHHHHT--GCSEE-EE
T ss_pred HhcCCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH--HHHHHHHcC--ccccc-ee
Confidence 344456669999999999999998887764 43 689999973 222 222222231 00000 01
Q ss_pred CCCCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 396 EGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
...++.+.++. .|++|-+++.+ -.++++.++.... ...+||=||+|-.
T Consensus 65 ~~~~~~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~---~~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 65 PLEDLEEALQE--ADIVINATPSGMPIITEEMLKKASK---KLRLVIDLAVPRD 113 (135)
T ss_dssp EGGGHCHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCH---HCSEEEES-SS-S
T ss_pred eHHHHHHHHhh--CCeEEEecCCCCcccCHHHHHHHHh---hhhceeccccCCC
Confidence 23446677777 89999998765 3788988876521 1249999999976
No 26
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.56 E-value=0.014 Score=54.99 Aligned_cols=79 Identities=16% Similarity=0.313 Sum_probs=61.2
Q ss_pred CCCCceEEEeCccH-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCC
Q 011618 320 DFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGA 398 (481)
Q Consensus 320 dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~ 398 (481)
+|.+.+++|+|+|. +|..+|+.|... | .++++++++ . .
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~-----g-------~~V~v~~r~--------------------~---------~ 79 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNR-----N-------ATVTVCHSK--------------------T---------K 79 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhC-----C-------CEEEEEECC--------------------c---------h
Confidence 34449999999997 599899888753 3 258888864 0 1
Q ss_pred CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
.|.+.++. .|++|.+++.+..|+++.++ +.-+|+=++.|-.
T Consensus 80 ~l~~~l~~--aDiVIsat~~~~ii~~~~~~-------~~~viIDla~prd 120 (168)
T cd01080 80 NLKEHTKQ--ADIVIVAVGKPGLVKGDMVK-------PGAVVIDVGINRV 120 (168)
T ss_pred hHHHHHhh--CCEEEEcCCCCceecHHHcc-------CCeEEEEccCCCc
Confidence 37778888 99999999988899998653 3468999999873
No 27
>PLN02477 glutamate dehydrogenase
Probab=96.51 E-value=0.13 Score=55.26 Aligned_cols=192 Identities=19% Similarity=0.202 Sum_probs=125.3
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CceEEEeecCCCchH--HHHHHHHhhc----------CCcc----ccCcchhHHHHHH
Q 011618 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKR----------FCMF----NDDIQGTAGVALA 305 (481)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~~IqfEDf~~~na--f~iL~ryr~~----------~~~F----NDDiQGTaaV~LA 305 (481)
++..|-..+...|+.++.... |..-|-=+|++..-. --+.++|+.. -|+. .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 456788889999999998876 555566678876422 2256777651 1221 2333457777778
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEeccceeecCCCCCChhhh-c
Q 011618 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA-P 383 (481)
Q Consensus 306 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~~~r~~l~~~k~-~ 383 (481)
++-.+++..|.+|+. .||+|.|.|..|.++|++|.+. |. +|+ +.|++|-|.... .|+.... .
T Consensus 192 ~~~~~~~~~g~~l~g---~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~-GLD~~~L~~ 255 (410)
T PLN02477 192 ATEALLAEHGKSIAG---QTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNEN-GLDIPALRK 255 (410)
T ss_pred HHHHHHHHcCCCccC---CEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCC-CCCHHHHHH
Confidence 888888888887777 9999999999999999988653 42 566 899999998865 3443221 1
Q ss_pred cccccCCcCCc--CCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHh
Q 011618 384 FAKDPGDFMGL--REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFF 461 (481)
Q Consensus 384 fA~~~~~~~~~--~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~ 461 (481)
+.+......+. ....+-.|.+. .+.||||=+. .++.+|++.+..+ ...||.--+|--...| +++.++
T Consensus 256 ~k~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i-----~ak~I~egAN~p~t~e----a~~~L~ 324 (410)
T PLN02477 256 HVAEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV-----KAKFIVEAANHPTDPE----ADEILR 324 (410)
T ss_pred HHHhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc-----CCcEEEeCCCCCCCHH----HHHHHH
Confidence 11111100000 01122333333 4899999776 4799999999987 4778888887433344 555543
No 28
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.38 E-value=0.015 Score=59.07 Aligned_cols=110 Identities=17% Similarity=0.241 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccH-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCC
Q 011618 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (481)
Q Consensus 298 GTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 376 (481)
..+-.|-.|++..++..+.+++. ++++++|+|- +|..+|.+|... | | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~G---k~vvViG~gg~vGkpia~~L~~~-----g-----a--tVtv~~~~--------- 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAG---KHAVVVGRSAILGKPMAMMLLNA-----N-----A--TVTICHSR--------- 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCC---CEEEEECCcHHHHHHHHHHHHhC-----C-----C--EEEEEeCC---------
Confidence 44677779999999999998888 9999999997 999999998642 3 1 68888752
Q ss_pred CChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEec-CCCCC--CC-CC
Q 011618 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAM-SNPTM--NG-LF 452 (481)
Q Consensus 377 l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaL-SNPt~--~a-E~ 452 (481)
..+|.+.++. +|++|-+.+.++.|+.++++ +.-+|+=. .||.. .+ +
T Consensus 193 --------------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk-------~gavViDvg~n~~~~~~~GD- 242 (283)
T PRK14192 193 --------------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK-------QGAVVVDAGFHPRDGGGVGD- 242 (283)
T ss_pred --------------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC-------CCCEEEEEEEeecCCCCccc-
Confidence 0237777776 99999999999999987754 34566654 37741 12 4
Q ss_pred CCCHHHHHhc
Q 011618 453 SCCVTTFFFY 462 (481)
Q Consensus 453 ~~t~eda~~w 462 (481)
+.+|++.+.
T Consensus 243 -vd~~~~~~~ 251 (283)
T PRK14192 243 -IELQGIEEI 251 (283)
T ss_pred -ccHHHhhcc
Confidence 566666543
No 29
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.01 E-value=0.11 Score=49.38 Aligned_cols=119 Identities=23% Similarity=0.328 Sum_probs=75.0
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCC
Q 011618 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (481)
Q Consensus 297 QGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 376 (481)
.||+--++-|++. .++..|.- .++|++|-|--|-|+|+.+....+ ++.++|.+
T Consensus 3 yG~g~S~~d~i~r---~t~~~l~G---k~vvV~GYG~vG~g~A~~lr~~Ga------------~V~V~e~D--------- 55 (162)
T PF00670_consen 3 YGTGQSLVDGIMR---ATNLMLAG---KRVVVIGYGKVGKGIARALRGLGA------------RVTVTEID--------- 55 (162)
T ss_dssp HHHHHHHHHHHHH---HH-S--TT---SEEEEE--SHHHHHHHHHHHHTT-------------EEEEE-SS---------
T ss_pred cccchhHHHHHHh---cCceeeCC---CEEEEeCCCcccHHHHHHHhhCCC------------EEEEEECC---------
Confidence 5777777777764 57777777 999999999999999999876543 67766652
Q ss_pred CChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCH
Q 011618 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCV 456 (481)
Q Consensus 377 l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~ 456 (481)
+.+.-=|.-. + -+..+++|+++. +|++|-+++...+.+.|.++.|. +.-|+.-..- ...| +.-
T Consensus 56 --Pi~alqA~~d----G-f~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk----dgail~n~Gh--~d~E--id~ 118 (162)
T PF00670_consen 56 --PIRALQAAMD----G-FEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK----DGAILANAGH--FDVE--IDV 118 (162)
T ss_dssp --HHHHHHHHHT----T--EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS-----TTEEEEESSS--STTS--BTH
T ss_pred --hHHHHHhhhc----C-cEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc----CCeEEeccCc--Ccee--Eee
Confidence 2222222211 1 123469999987 99999999988899999999993 5667765552 2347 555
Q ss_pred HHH
Q 011618 457 TTF 459 (481)
Q Consensus 457 eda 459 (481)
+..
T Consensus 119 ~~L 121 (162)
T PF00670_consen 119 DAL 121 (162)
T ss_dssp HHH
T ss_pred ccc
Confidence 553
No 30
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.96 E-value=0.016 Score=60.60 Aligned_cols=126 Identities=13% Similarity=0.094 Sum_probs=73.4
Q ss_pred chHHHHHHHHhhcCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChh
Q 011618 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (481)
Q Consensus 276 ~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~e 355 (481)
..|+..=.|-|.+.-. |+++|.++.+ |.+...+ +.+|.+.+++|+|||..|--+|+.|.+. |.
T Consensus 136 ~~A~~~aKrVRteT~I------~~~~vSv~s~--av~~~~~-~~~l~~k~vLvIGaGem~~l~a~~L~~~-----g~--- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGGA------PYAEVTIESV--VQQELRR-RQKSKKASLLFIGYSEINRKVAYYLQRQ-----GY--- 198 (338)
T ss_pred HHHHHHHHHHhhhcCC------CCCCcCHHHH--HHHHHHH-hCCccCCEEEEEcccHHHHHHHHHHHHc-----CC---
Confidence 4566666666665211 4555666544 3333322 3445559999999999988887777653 44
Q ss_pred hhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeec----CCCCCCCHHHHHHhh
Q 011618 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMR 431 (481)
Q Consensus 356 eA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~Ma 431 (481)
++|+++++.-. + .+|.... ....+.. .+.||+|-.| +..-.++.+.++..
T Consensus 199 ---~~i~v~nRt~~----~-------~~~~~~~---------~~~~~~~--~~~DvVIs~t~~Tas~~p~i~~~~~~~~- 252 (338)
T PRK00676 199 ---SRITFCSRQQL----T-------LPYRTVV---------REELSFQ--DPYDVIFFGSSESAYAFPHLSWESLADI- 252 (338)
T ss_pred ---CEEEEEcCCcc----c-------cchhhhh---------hhhhhcc--cCCCEEEEcCCcCCCCCceeeHHHHhhc-
Confidence 57999888641 1 2222110 0001111 3589999753 22345666665542
Q ss_pred hcCCCCCEEEecCCCCC
Q 011618 432 ESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 432 ~~~~erPIIFaLSNPt~ 448 (481)
.+| ++|=||+|-.
T Consensus 253 ---~~r-~~iDLAvPRd 265 (338)
T PRK00676 253 ---PDR-IVFDFNVPRT 265 (338)
T ss_pred ---cCc-EEEEecCCCC
Confidence 124 9999999987
No 31
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.91 E-value=0.02 Score=61.32 Aligned_cols=138 Identities=23% Similarity=0.299 Sum_probs=85.8
Q ss_pred chHHHHHHHHhhcCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChh
Q 011618 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (481)
Q Consensus 276 ~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~e 355 (481)
..|+..=.|+|.+-- =|.++|.++. +|+....+.+.+|++.+++|+|||..|-.+|+.|... |.
T Consensus 139 qkAi~~gKrvRseT~------I~~~~VSi~s--aAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~-----g~--- 202 (414)
T COG0373 139 QKAISVGKRVRSETG------IGKGAVSISS--AAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEK-----GV--- 202 (414)
T ss_pred HHHHHHHHHhhcccC------CCCCccchHH--HHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhC-----CC---
Confidence 567777778887621 1344444432 2333333333345559999999999999999888765 43
Q ss_pred hhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcC
Q 011618 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESD 434 (481)
Q Consensus 356 eA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~ 434 (481)
++|+++++ |..| -+.+|+.-.- . ......|.+.+.. .||+|-.++.| -.++.+.++.-.+
T Consensus 203 ---~~i~IaNR----T~er------A~~La~~~~~-~-~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~-- 263 (414)
T COG0373 203 ---KKITIANR----TLER------AEELAKKLGA-E-AVALEELLEALAE--ADVVISSTSAPHPIITREMVERALK-- 263 (414)
T ss_pred ---CEEEEEcC----CHHH------HHHHHHHhCC-e-eecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHh--
Confidence 68998877 2222 1233432210 0 0012347777777 89999776654 6788888876532
Q ss_pred CCCC-EEEecCCCCC
Q 011618 435 SVKP-AIFAMSNPTM 448 (481)
Q Consensus 435 ~erP-IIFaLSNPt~ 448 (481)
..+. +||=++||-.
T Consensus 264 ~r~~~livDiavPRd 278 (414)
T COG0373 264 IRKRLLIVDIAVPRD 278 (414)
T ss_pred cccCeEEEEecCCCC
Confidence 3334 9999999976
No 32
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.91 E-value=0.35 Score=52.61 Aligned_cols=179 Identities=17% Similarity=0.156 Sum_probs=121.9
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CceEEEeecCCCchHH---HHHHHHhhc---C-Cccc----------cCcchhHHHHH
Q 011618 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWAF---ETLERYRKR---F-CMFN----------DDIQGTAGVAL 304 (481)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~~IqfEDf~~~naf---~iL~ryr~~---~-~~FN----------DDiQGTaaV~L 304 (481)
.+..|-..|...||..+.+.. |+.-|-=.|++. ++. -+.+.|+.- . .|+- +--..||-=+.
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 456677889999999998776 888888889884 332 255666542 1 1111 11223777777
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEeccceeecCCCCCChhhh-
Q 011618 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA- 382 (481)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~~~r~~l~~~k~- 382 (481)
.++-.+++..+.+|+. .|++|-|.|..|...|+.|.+. |. +++ +.|++|-|.... .|+..+.
T Consensus 222 ~~~~~~l~~~~~~l~G---k~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~-Gld~~~l~ 285 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEG---KTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN-GFTKEKLA 285 (454)
T ss_pred HHHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC-CCCHHHHH
Confidence 8888888988888888 9999999999999999998764 42 555 999999999875 4544332
Q ss_pred --------------ccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCC
Q 011618 383 --------------PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (481)
Q Consensus 383 --------------~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNP 446 (481)
.|+.... + ....+-. .+-.++.||+|=+.+ .+.+|++-++.+.+ +...+|.=-+|=
T Consensus 286 ~l~~~k~~~~g~i~~~~~~~~---~-a~~~~~~-~~~~~~cDI~iPcA~-~n~I~~~~a~~l~~--~~ak~V~EgAN~ 355 (454)
T PTZ00079 286 YLMDLKNVKRGRLKEYAKHSS---T-AKYVPGK-KPWEVPCDIAFPCAT-QNEINLEDAKLLIK--NGCKLVAEGANM 355 (454)
T ss_pred HHHHHHhhcCCcHHhhhhccC---C-cEEeCCc-CcccCCccEEEeccc-cccCCHHHHHHHHH--cCCeEEEecCCC
Confidence 1211000 0 0000111 122368999998876 69999999999843 566788888773
No 33
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.88 E-value=0.011 Score=63.01 Aligned_cols=134 Identities=16% Similarity=0.288 Sum_probs=77.5
Q ss_pred chHHHHHHHHhhcCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChh
Q 011618 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (481)
Q Consensus 276 ~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~e 355 (481)
..||+.=.|-|.+.-. |.++|.++ ..|++...+.+.+|.+.|++|+|||.+|-.+|..|.. .|.
T Consensus 142 ~~A~~~aKrVrteT~I------~~~~vSv~--~~Av~la~~~~~~l~~kkvlviGaG~~a~~va~~L~~-----~g~--- 205 (414)
T PRK13940 142 QKVFATAKRVRSETRI------GHCPVSVA--FSAITLAKRQLDNISSKNVLIIGAGQTGELLFRHVTA-----LAP--- 205 (414)
T ss_pred HHHHHHHHHHHhccCC------CCCCcCHH--HHHHHHHHHHhcCccCCEEEEEcCcHHHHHHHHHHHH-----cCC---
Confidence 3556666666655311 23333333 1233344433444555999999999999888887754 344
Q ss_pred hhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhcC
Q 011618 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESD 434 (481)
Q Consensus 356 eA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~ 434 (481)
++|+++++. .++ -+.+|..-+... .....+|.+++.. .|++|-+++.| -++|++.+ +
T Consensus 206 ---~~I~V~nRt----~~r------a~~La~~~~~~~-~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~----~-- 263 (414)
T PRK13940 206 ---KQIMLANRT----IEK------AQKITSAFRNAS-AHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYV----G-- 263 (414)
T ss_pred ---CEEEEECCC----HHH------HHHHHHHhcCCe-EecHHHHHHHhcc--CCEEEECcCCCCeeECHHHh----C--
Confidence 579988883 222 122332110000 0112357777877 89999988876 45786543 1
Q ss_pred CCCCE-EEecCCCCC
Q 011618 435 SVKPA-IFAMSNPTM 448 (481)
Q Consensus 435 ~erPI-IFaLSNPt~ 448 (481)
.+|. |+=||+|-.
T Consensus 264 -~~~~~~iDLavPRd 277 (414)
T PRK13940 264 -DKPRVFIDISIPQA 277 (414)
T ss_pred -CCCeEEEEeCCCCC
Confidence 4565 567999965
No 34
>PLN00203 glutamyl-tRNA reductase
Probab=95.86 E-value=0.026 Score=62.01 Aligned_cols=123 Identities=18% Similarity=0.240 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhCC-CCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCCh
Q 011618 301 GVALAGLLGTVRAQGL-SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (481)
Q Consensus 301 aV~LAgll~Alr~~g~-~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~ 379 (481)
+|+-+++=-|.+..|. +|.+ .+|+|+|||..|..+++.+.. .|. ++|+++++. .++ ...
T Consensus 246 Sv~s~Av~la~~~~~~~~l~~---kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er--a~~ 305 (519)
T PLN00203 246 SVSSAAVELALMKLPESSHAS---ARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER--VAA 305 (519)
T ss_pred CHHHHHHHHHHHhcCCCCCCC---CEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH--HHH
Confidence 3444445445555553 4666 999999999999999887753 353 579988874 111 122
Q ss_pred hhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCC-CCCCHHHHHHhhhc--CCCCC-EEEecCCCCC
Q 011618 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRES--DSVKP-AIFAMSNPTM 448 (481)
Q Consensus 380 ~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~--~~erP-IIFaLSNPt~ 448 (481)
....|-...-.+ ....++.++++. +|++|.+++.+ .++++++++.|-+. ...+| +|+=||.|-.
T Consensus 306 La~~~~g~~i~~---~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 306 LREEFPDVEIIY---KPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRN 373 (519)
T ss_pred HHHHhCCCceEe---ecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence 222221000000 012457888877 89999887654 58999999998320 11244 5667999964
No 35
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.84 E-value=0.38 Score=52.19 Aligned_cols=184 Identities=15% Similarity=0.123 Sum_probs=123.1
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CceEEEeecCCCchH--HHHHHHHhhc----CCcc----------ccCcchhHHHHHH
Q 011618 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKR----FCMF----------NDDIQGTAGVALA 305 (481)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~~IqfEDf~~~na--f~iL~ryr~~----~~~F----------NDDiQGTaaV~LA 305 (481)
.+..|...+.-.||+.+.+.. |..-|-=.|++..-. --+++.|+.- ..++ .+--..||-=+..
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~ 213 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALY 213 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHH
Confidence 455688889999999999544 777777888874321 2256777652 1221 1112237777788
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhc--
Q 011618 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP-- 383 (481)
Q Consensus 306 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~-- 383 (481)
++-.+++..|.+|+. .||+|-|.|..|...|+.|.++ |. +=+-+-|++|-|+... .|+..+..
T Consensus 214 ~~~~~~~~~g~~l~g---~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~-Gld~~~l~~l 278 (445)
T PRK14030 214 FVHQMLETKGIDIKG---KTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD-GISGEKIDYM 278 (445)
T ss_pred HHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC-CCCHHHHHHH
Confidence 888888888887777 9999999999999999998664 43 4577889999998754 35543311
Q ss_pred --cccccC--------CcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCC
Q 011618 384 --FAKDPG--------DFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (481)
Q Consensus 384 --fA~~~~--------~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNP 446 (481)
+-.... ...+ ....+-.+ +-.++.||||=+.. .+.+|++.++.+. .+...||.=-+|=
T Consensus 279 ~~~k~~~~~~~~~~~~~~~g-a~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~--~~~ak~V~EgAN~ 346 (445)
T PRK14030 279 LELRASGNDIVAPYAEKFPG-STFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLI--KNGVLCVAEVSNM 346 (445)
T ss_pred HHHHHhcCccHHHHHhcCCC-CEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHH--HcCCeEEEeCCCC
Confidence 000000 0000 00111122 23468999997775 6999999999994 3567899999987
No 36
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.74 E-value=0.089 Score=51.80 Aligned_cols=130 Identities=18% Similarity=0.282 Sum_probs=86.1
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCC
Q 011618 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (481)
Q Consensus 297 QGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 376 (481)
.-||-=+..++-.+++..+.++.. .||+|.|.|..|.++|++|.+. |. +=+.+.|++|-+.... .
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~---~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~-G 72 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAG---ARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPD-G 72 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC-C
Confidence 346666667777788877766666 9999999999999999998764 43 3455999999998765 3
Q ss_pred CChhhh-ccccccCCcCCcC--CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 377 LDPAAA-PFAKDPGDFMGLR--EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 377 l~~~k~-~fA~~~~~~~~~~--~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
|+.... .+.+........+ ...+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+|---
T Consensus 73 ld~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l-----~a~~I~egAN~~~ 140 (227)
T cd01076 73 LDVPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI-----KAKIIVEAANGPT 140 (227)
T ss_pred CCHHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc-----eeeEEEeCCCCCC
Confidence 433221 1111111000000 0112233 3345899999888 5899999999998 3789998887533
No 37
>PRK14031 glutamate dehydrogenase; Provisional
Probab=95.67 E-value=0.34 Score=52.62 Aligned_cols=185 Identities=15% Similarity=0.111 Sum_probs=122.5
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CceEEEeecCCCc--hHHHHHHHHhhcC----Ccc----------ccCcchhHHHHHH
Q 011618 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMK--WAFETLERYRKRF----CMF----------NDDIQGTAGVALA 305 (481)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~~IqfEDf~~~--naf~iL~ryr~~~----~~F----------NDDiQGTaaV~LA 305 (481)
.+-.|...+.-.||..+.... |..-|-=+|++.. .---+.+.|+..- -++ .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 566788889999999999877 8888888898763 2234677776531 222 2334457777788
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccc
Q 011618 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA 385 (481)
Q Consensus 306 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA 385 (481)
++-.+++..|.+|+. +||+|-|.|..|...|+.|.++.. +=+-+-|++|-|.... .|+..+..|-
T Consensus 214 ~~~~~~~~~g~~l~g---~rVaVQGfGNVG~~aA~~L~e~GA-----------kVVaVSD~~G~iy~~~-Gld~~~l~~~ 278 (444)
T PRK14031 214 FLMEMLKTKGTDLKG---KVCLVSGSGNVAQYTAEKVLELGG-----------KVVTMSDSDGYIYDPD-GIDREKLDYI 278 (444)
T ss_pred HHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHCCC-----------EEEEEECCCCeEECCC-CCCHHHHHHH
Confidence 888888888887777 999999999999999999976533 3355699999888654 4655433211
Q ss_pred cc-----cCCcCCc-----CCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCC
Q 011618 386 KD-----PGDFMGL-----REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (481)
Q Consensus 386 ~~-----~~~~~~~-----~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNP 446 (481)
+. .....+. ....+-.+ +-.++.|+||=+.. .+.+|++.++.+.+ +-.-+|.--+|=
T Consensus 279 ~~~k~~~~~~v~~~~~~~ga~~i~~d~-~~~~~cDIliPaAl-~n~I~~~na~~l~a--~g~~~V~EgAN~ 345 (444)
T PRK14031 279 MELKNLYRGRIREYAEKYGCKYVEGAR-PWGEKGDIALPSAT-QNELNGDDARQLVA--NGVIAVSEGANM 345 (444)
T ss_pred HHHHhhcCCchhhhHhhcCCEEcCCcc-cccCCCcEEeeccc-ccccCHHHHHHHHh--cCCeEEECCCCC
Confidence 10 0000000 00011112 22357899997765 69999999999943 112377777775
No 38
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.64 E-value=0.053 Score=55.15 Aligned_cols=108 Identities=16% Similarity=0.217 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhc
Q 011618 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP 383 (481)
Q Consensus 304 LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~ 383 (481)
-+++..|++..+..+.. .|++|+|+|.+|..++..+... | -+++++|++- .+..
T Consensus 136 egav~~a~~~~~~~l~g---~kvlViG~G~iG~~~a~~L~~~-----G-------a~V~v~~r~~-----------~~~~ 189 (296)
T PRK08306 136 EGAIMMAIEHTPITIHG---SNVLVLGFGRTGMTLARTLKAL-----G-------ANVTVGARKS-----------AHLA 189 (296)
T ss_pred HHHHHHHHHhCCCCCCC---CEEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEECCH-----------HHHH
Confidence 33555677777777766 9999999999999998887653 4 2688888851 1111
Q ss_pred cccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCC
Q 011618 384 FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (481)
Q Consensus 384 fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNP 446 (481)
.++...- . .....++.+.++. .|++|-++ .+..++++.++.|. +..+|+=++..
T Consensus 190 ~~~~~G~-~-~~~~~~l~~~l~~--aDiVI~t~-p~~~i~~~~l~~~~----~g~vIIDla~~ 243 (296)
T PRK08306 190 RITEMGL-S-PFHLSELAEEVGK--IDIIFNTI-PALVLTKEVLSKMP----PEALIIDLASK 243 (296)
T ss_pred HHHHcCC-e-eecHHHHHHHhCC--CCEEEECC-ChhhhhHHHHHcCC----CCcEEEEEccC
Confidence 1211100 0 0012357788876 89999865 35778999999994 46677755543
No 39
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.52 E-value=0.043 Score=57.48 Aligned_cols=237 Identities=14% Similarity=0.200 Sum_probs=122.3
Q ss_pred ChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCC--ccccccchhhhhhhhhcCCCCCceecEEeeccCC----cccc
Q 011618 156 DKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV--QGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTN----NQKL 229 (481)
Q Consensus 156 d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~--~Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTn----N~~L 229 (481)
-|.++..+.+ .+.+|+|=+.-+.-.|+-|--- .|-.|......+|. + .|++=|..= =+.+
T Consensus 19 ~P~~v~~l~~----~g~~v~vE~gaG~~~~~~D~~Y~~aGa~i~~~~~~~~~--~--------dii~~Vk~p~~~~~~~~ 84 (370)
T TIGR00518 19 TPAGVAELTS----RGHEVLVEAGAGEGSGFTDAAYKAAGAELVATAKQVWD--A--------ELVLKVKEPLPEEYGYL 84 (370)
T ss_pred CHHHHHHHHh----CCCEEEEECCCCcCCCCChHHHHHCCCEEecCHHHHhc--C--------CEEEEeCCCCHHHHhhc
Confidence 3556666665 3678999888777777777553 35555444445552 1 233333210 0122
Q ss_pred ccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEEEeecCCCchHHHHHHHHhhcCCcc--ccCcchhHHHHHHHH
Q 011618 230 LEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMF--NDDIQGTAGVALAGL 307 (481)
Q Consensus 230 L~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~~~~F--NDDiQGTaaV~LAgl 307 (481)
..+..++++=|+=-. .+.+++..+.- -..|-+|-+.. -+.+.++| +--+-|--||.+|+-
T Consensus 85 ~~g~~l~~~~~~a~~--------~~~~~~l~~~~-~t~i~~e~i~~---------~~~~~~~l~~~~~iaG~~av~~aa~ 146 (370)
T TIGR00518 85 RHGQILFTYLHLAAE--------RALTDALLDSG-TTAIAYETVQT---------ADGALPLLAPMSEVAGRLAAQVGAY 146 (370)
T ss_pred CCCcEEEEEeccCCC--------HHHHHHHHHcC-CeEEEeeeeec---------cCCCCccccchhHHHHHHHHHHHHH
Confidence 344455555554210 02222222111 12455555431 11122222 223445555544443
Q ss_pred HHHHHHhC------CCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhh
Q 011618 308 LGTVRAQG------LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA 381 (481)
Q Consensus 308 l~Alr~~g------~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k 381 (481)
..- |..+ ..+..+...+++|+|+|.+|.++|+.+... |. ++.++|++- . .+....
T Consensus 147 ~~~-~~~~g~~~~~~~~~~l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~~----~--~~~~l~ 207 (370)
T TIGR00518 147 HLE-KTQGGRGVLLGGVPGVEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDINI----D--RLRQLD 207 (370)
T ss_pred HhH-hhcCCcceeecCCCCCCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECCH----H--HHHHHH
Confidence 222 2222 111123448999999999999999988654 42 588888731 1 111122
Q ss_pred hccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCC-----CCCCCHHHHHHhhhcCCCCCEEEecC-CCCCCCC
Q 011618 382 APFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV-----GGVFNEEVLKAMRESDSVKPAIFAMS-NPTMNGL 451 (481)
Q Consensus 382 ~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~-----~g~Ft~evv~~Ma~~~~erPIIFaLS-NPt~~aE 451 (481)
..|...... . ..+...|.++++. .|++|.+... |.++|++.++.|. ...+|+-+| .|.-.+|
T Consensus 208 ~~~g~~v~~-~-~~~~~~l~~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk----~g~vIvDva~d~GG~~e 275 (370)
T TIGR00518 208 AEFGGRIHT-R-YSNAYEIEDAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK----PGAVIVDVAIDQGGCVE 275 (370)
T ss_pred HhcCceeEe-c-cCCHHHHHHHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC----CCCEEEEEecCCCCCcc
Confidence 222211000 0 0112358888876 8999987532 4568999999993 567888777 4455556
No 40
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.50 E-value=0.036 Score=56.71 Aligned_cols=141 Identities=17% Similarity=0.270 Sum_probs=96.1
Q ss_pred HHHHHHHHHhC--Cc---eEEEeecCCCchHHHHHHHHhh--cCC---------ccccCcchhHHHHHHHHHHHHHHhCC
Q 011618 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYRK--RFC---------MFNDDIQGTAGVALAGLLGTVRAQGL 316 (481)
Q Consensus 253 defv~av~~~~--P~---~~IqfEDf~~~naf~iL~ryr~--~~~---------~FNDDiQGTaaV~LAgll~Alr~~g~ 316 (481)
+||++.+++.- |+ .++|+==-..-+..++++...- .+= .|.++ .+=.-+|-+|++.-++-.+.
T Consensus 76 ~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~-~~~~PcTp~ai~~ll~~~~i 154 (286)
T PRK14175 76 EEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYIDE-QTFVPCTPLGIMEILKHADI 154 (286)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcCC-CCCCCCcHHHHHHHHHHcCC
Confidence 56777777664 54 2666532223344444443321 121 22222 33456788899999999998
Q ss_pred CCCCCCCceEEEeCccH-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcC
Q 011618 317 SLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (481)
Q Consensus 317 ~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (481)
+|+. .+++|+|+|. .|..+|.+|... | ..+++++++.
T Consensus 155 ~l~G---k~vvVIGrs~~VG~pla~lL~~~-----g-------atVtv~~s~t--------------------------- 192 (286)
T PRK14175 155 DLEG---KNAVVIGRSHIVGQPVSKLLLQK-----N-------ASVTILHSRS--------------------------- 192 (286)
T ss_pred CCCC---CEEEEECCCchhHHHHHHHHHHC-----C-------CeEEEEeCCc---------------------------
Confidence 8888 9999999988 999999998642 3 3678887631
Q ss_pred CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCC
Q 011618 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (481)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt 447 (481)
.+|.+.++. +|++|...+.|+.|++++|+ +.-+|+=++.|-
T Consensus 193 --~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk-------~gavVIDvGi~~ 233 (286)
T PRK14175 193 --KDMASYLKD--ADVIVSAVGKPGLVTKDVVK-------EGAVIIDVGNTP 233 (286)
T ss_pred --hhHHHHHhh--CCEEEECCCCCcccCHHHcC-------CCcEEEEcCCCc
Confidence 137888888 99999999999999998764 346887777653
No 41
>PLN00106 malate dehydrogenase
Probab=95.47 E-value=0.055 Score=56.07 Aligned_cols=120 Identities=20% Similarity=0.242 Sum_probs=78.9
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChhhh
Q 011618 305 AGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAA 382 (481)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~ 382 (481)
|.-+.|+|..|..-. .||+|+|| |..|..+|..|.. .|+- ..+.++|.+- ..+. -+|.+...
T Consensus 4 ~~~~~~~~~~~~~~~----~KV~IiGaaG~VG~~~a~~l~~-----~~~~-----~el~L~Di~~--~~g~a~Dl~~~~~ 67 (323)
T PLN00106 4 ASSLRACRAKGGAPG----FKVAVLGAAGGIGQPLSLLMKM-----NPLV-----SELHLYDIAN--TPGVAADVSHINT 67 (323)
T ss_pred hhhhhccccccCCCC----CEEEEECCCCHHHHHHHHHHHh-----CCCC-----CEEEEEecCC--CCeeEchhhhCCc
Confidence 445678888887654 49999999 9999999987763 2332 4799999865 1111 13332221
Q ss_pred ccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCC--------------CCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 383 PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 383 ~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
+ .+-. ......++.+++++ .|++|=+.+.+.. ..+++++.+.+ ++.+.||+.-|||..
T Consensus 68 ~-~~i~----~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~-~~p~aivivvSNPvD 139 (323)
T PLN00106 68 P-AQVR----GFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAK-HCPNALVNIISNPVN 139 (323)
T ss_pred C-ceEE----EEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEeCCCcc
Confidence 1 1110 00123468899999 8998866665432 34567777754 889999999999996
No 42
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.37 E-value=0.11 Score=49.97 Aligned_cols=110 Identities=23% Similarity=0.306 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHHh--CCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCC
Q 011618 299 TAGVALAGLLGTVRAQ--GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (481)
Q Consensus 299 TaaV~LAgll~Alr~~--g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 376 (481)
||-=+..++-.+++.. +.+++. .+|+|.|.|..|..+|+.|.+. |. +++..|++. +.
T Consensus 5 Tg~Gv~~~~~~~~~~~~~~~~l~g---k~v~I~G~G~vG~~~A~~L~~~-----G~-------~Vvv~D~~~------~~ 63 (200)
T cd01075 5 TAYGVFLGMKAAAEHLLGTDSLEG---KTVAVQGLGKVGYKLAEHLLEE-----GA-------KLIVADINE------EA 63 (200)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH------HH
Confidence 4444555666666664 677766 9999999999999999988764 42 688888641 11
Q ss_pred CChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCC
Q 011618 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (481)
Q Consensus 377 l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN 445 (481)
+..++..|. . ...+..+... .+.|+++=++. .+.+|++.++.| ..++|..-+|
T Consensus 64 ~~~~~~~~g---~------~~v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l-----~~~~v~~~AN 116 (200)
T cd01075 64 VARAAELFG---A------TVVAPEEIYS-VDADVFAPCAL-GGVINDDTIPQL-----KAKAIAGAAN 116 (200)
T ss_pred HHHHHHHcC---C------EEEcchhhcc-ccCCEEEeccc-ccccCHHHHHHc-----CCCEEEECCc
Confidence 222222221 0 0111233332 36899996654 789999999999 2568888877
No 43
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.36 E-value=0.082 Score=53.67 Aligned_cols=127 Identities=13% Similarity=0.154 Sum_probs=81.2
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCC
Q 011618 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (481)
Q Consensus 296 iQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~ 375 (481)
+..+..++=.++.-+++..+..+.+ .+++|+|+|.+|..+|+.+... |. +++++|++. +
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~g---k~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~------~ 185 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHG---SNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS------A 185 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCC---CEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH------H
Confidence 4455566666666777777777777 9999999999999999998753 42 588888741 1
Q ss_pred CCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCC
Q 011618 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCC 455 (481)
Q Consensus 376 ~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t 455 (481)
.+...+ .+ .... ....+|.+.++. .|++|=+. ..+.++++.++.|. +..+|+=+|..-- + +.
T Consensus 186 ~~~~~~-~~--g~~~----~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k----~~aliIDlas~Pg--~--td 247 (287)
T TIGR02853 186 DLARIT-EM--GLIP----FPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP----KHAVIIDLASKPG--G--TD 247 (287)
T ss_pred HHHHHH-HC--CCee----ecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC----CCeEEEEeCcCCC--C--CC
Confidence 111111 00 0000 012357888876 89999654 34678999999883 4567876664222 4 66
Q ss_pred HHHHHh
Q 011618 456 VTTFFF 461 (481)
Q Consensus 456 ~eda~~ 461 (481)
.+.|.+
T Consensus 248 f~~Ak~ 253 (287)
T TIGR02853 248 FEYAKK 253 (287)
T ss_pred HHHHHH
Confidence 655544
No 44
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.33 E-value=0.5 Score=51.33 Aligned_cols=183 Identities=17% Similarity=0.137 Sum_probs=121.5
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CceEEEeecCCCchH--HHHHHHHhhcC----------Ccc----ccCcchhHHHHHH
Q 011618 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKRF----------CMF----NDDIQGTAGVALA 305 (481)
Q Consensus 243 ~~g~~Y~~~vdefv~av~~~~-P~~~IqfEDf~~~na--f~iL~ryr~~~----------~~F----NDDiQGTaaV~LA 305 (481)
.+..|-..|...|+.++...+ |..-|-=+|++..-. --+.++|+.-. |+- .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 566688889999999999988 777888889875322 23567776431 211 1233457766777
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEE-eccceeecCCCCCChhh--h
Q 011618 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL-DKDGLITKERKNLDPAA--A 382 (481)
Q Consensus 306 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lv-D~~GLi~~~r~~l~~~k--~ 382 (481)
++..+++..+.+|+. .||+|.|-|..|...|++|.+. |. +|+-+ |++|-|.... .|+... +
T Consensus 218 ~~~~~~~~~~~~l~g---~rVaIqGfGnVG~~~A~~L~~~-----Ga-------kVVavsDs~G~iyn~~-GLD~~~L~~ 281 (445)
T PRK09414 218 FAEEMLKARGDSFEG---KRVVVSGSGNVAIYAIEKAQQL-----GA-------KVVTCSDSSGYVYDEE-GIDLEKLKE 281 (445)
T ss_pred HHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCceEECCC-CCCHHHHHH
Confidence 888888888887777 9999999999999999999643 43 55555 9999998765 344321 1
Q ss_pred ccccccC---CcCCc--CCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCC
Q 011618 383 PFAKDPG---DFMGL--REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (481)
Q Consensus 383 ~fA~~~~---~~~~~--~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN 445 (481)
....... .+... ....+-. .+..++.||||=+.. .+..|++-...+. .+...||.=-+|
T Consensus 282 ~k~~~~~~l~~~~~~~~~~~i~~~-~i~~~d~DVliPaAl-~n~It~~~a~~i~--~~~akiIvEgAN 345 (445)
T PRK09414 282 IKEVRRGRISEYAEEFGAEYLEGG-SPWSVPCDIALPCAT-QNELDEEDAKTLI--ANGVKAVAEGAN 345 (445)
T ss_pred HHHhcCCchhhhhhhcCCeecCCc-cccccCCcEEEecCC-cCcCCHHHHHHHH--HcCCeEEEcCCC
Confidence 1110000 00000 0011222 234568999997775 8999999999983 245678888887
No 45
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.97 E-value=0.24 Score=50.07 Aligned_cols=131 Identities=11% Similarity=0.073 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEeccceeecCCCC
Q 011618 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKN 376 (481)
Q Consensus 298 GTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~~~r~~ 376 (481)
.||-=+.-++-.+++..+.+|+. .||+|-|-|..|.+.|++|.+. |. +++ +.|++|-|+... .
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g---~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~-G 79 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKG---KRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD-G 79 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC-C
Confidence 35555666777778888877777 9999999999999999998763 42 455 999999998765 3
Q ss_pred CChhhh--cccc---cc---CCcC-Cc--CCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCC
Q 011618 377 LDPAAA--PFAK---DP---GDFM-GL--REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (481)
Q Consensus 377 l~~~k~--~fA~---~~---~~~~-~~--~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN 445 (481)
|+..+. -+.+ .. .... .. ....+-.| +-..+.||||=+.. .+.+|++.+..+. .+.-+||.--+|
T Consensus 80 ld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~-~~~~~~DIliPcAl-~~~I~~~na~~i~--~~~ak~I~EgAN 155 (254)
T cd05313 80 FTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKK-PWEVPCDIAFPCAT-QNEVDAEDAKLLV--KNGCKYVAEGAN 155 (254)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcc-hhcCCCcEEEeccc-cccCCHHHHHHHH--HcCCEEEEeCCC
Confidence 442211 0000 00 0000 00 00112222 22457999997764 7999999999994 356779998887
Q ss_pred -CCC
Q 011618 446 -PTM 448 (481)
Q Consensus 446 -Pt~ 448 (481)
|++
T Consensus 156 ~p~t 159 (254)
T cd05313 156 MPCT 159 (254)
T ss_pred CCCC
Confidence 443
No 46
>PRK08328 hypothetical protein; Provisional
Probab=94.71 E-value=0.034 Score=54.50 Aligned_cols=55 Identities=31% Similarity=0.507 Sum_probs=41.7
Q ss_pred HHHHHhhcCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCe
Q 011618 281 TLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (481)
Q Consensus 281 iL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~ 360 (481)
-++||..++..|..+.| .+|.+ .||+|+|+|..|..||+.|+.+++ ++
T Consensus 6 ~~~ry~Rq~~~~g~~~q------------------~~L~~---~~VlIiG~GGlGs~ia~~La~~Gv-----------g~ 53 (231)
T PRK08328 6 ELERYDRQIMIFGVEGQ------------------EKLKK---AKVAVVGVGGLGSPVAYYLAAAGV-----------GR 53 (231)
T ss_pred HHHHHhhHHHhcCHHHH------------------HHHhC---CcEEEECCCHHHHHHHHHHHHcCC-----------CE
Confidence 35788877766654322 23445 899999999999999999987644 68
Q ss_pred EEEEecc
Q 011618 361 FFLLDKD 367 (481)
Q Consensus 361 i~lvD~~ 367 (481)
|.++|.+
T Consensus 54 i~lvD~D 60 (231)
T PRK08328 54 ILLIDEQ 60 (231)
T ss_pred EEEEcCC
Confidence 9999975
No 47
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.33 E-value=0.05 Score=58.27 Aligned_cols=120 Identities=19% Similarity=0.286 Sum_probs=72.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHc-CCChhhhcCeEEEEeccceeecCCC-CCChhhhcccccc-CCcCCcCCCCCH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMA-GNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDP-GDFMGLREGASL 400 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~-Gls~eeA~~~i~lvD~~GLi~~~r~-~l~~~k~~fA~~~-~~~~~~~~~~~L 400 (481)
.||+|+||||+ -...|+..+.... .++. +.|||+|-+ .+|- .+...-+.+++.. .++. .....++
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~~----~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~-v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELPI----SEVTLYDID----EERLDIILTIAKRYVEEVGADIK-FEKTMDL 68 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCCC----CEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeE-EEEeCCH
Confidence 38999999996 4444444444222 4543 689999964 3331 1222222233221 1211 1134679
Q ss_pred HHHhcccCCcEEE---------------------ee-----cCCCCCCC--------HHHHHHhhhcCCCCCEEEecCCC
Q 011618 401 LEVVRKVKPHVLL---------------------GL-----SGVGGVFN--------EEVLKAMRESDSVKPAIFAMSNP 446 (481)
Q Consensus 401 ~e~V~~vkptvLI---------------------G~-----S~~~g~Ft--------~evv~~Ma~~~~erPIIFaLSNP 446 (481)
.||+++ +|.+| |+ .|.+|.|. .++++.|. +++...+|+-.|||
T Consensus 69 ~~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~-~~~P~a~lin~TNP 145 (425)
T cd05197 69 EDAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXE-KLSPDAWYLNFTNP 145 (425)
T ss_pred HHHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHH-HhCCCcEEEecCCh
Confidence 999999 88887 21 22234433 38888885 49999999999999
Q ss_pred CCCCCCCCCHHHHHhcc
Q 011618 447 TMNGLFSCCVTTFFFYL 463 (481)
Q Consensus 447 t~~aE~~~t~eda~~wt 463 (481)
.. +..+-+++++
T Consensus 146 ~d-----i~t~a~~~~~ 157 (425)
T cd05197 146 AG-----EVTEAVRRYV 157 (425)
T ss_pred HH-----HHHHHHHHhC
Confidence 98 4445566666
No 48
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.10 E-value=0.13 Score=52.89 Aligned_cols=119 Identities=17% Similarity=0.208 Sum_probs=72.6
Q ss_pred CCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChhhhccccccCCcCCcCCCCCH
Q 011618 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASL 400 (481)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L 400 (481)
+..||.|+|||+.|.++|.+++. .|+. .+.|+|.+-=...+. -++.+. ..+....... ....++
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~~------~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i---~~~~d~ 68 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNLG------DVVLYDVIKGVPQGKALDLKHF-STLVGSNINI---LGTNNY 68 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCCC------eEEEEECCCccchhHHHHHhhh-ccccCCCeEE---EeCCCH
Confidence 34799999999999999887664 3542 499999742111111 122222 1111110000 112456
Q ss_pred HHHhcccCCcEEEeecCCCC--------------CCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhccc
Q 011618 401 LEVVRKVKPHVLLGLSGVGG--------------VFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYLM 464 (481)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g--------------~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt~ 464 (481)
+ ++++ +|++|=+.+.+. -+-+++.+.|.+ ++...+++-.|||.. .....+.++++
T Consensus 69 ~-~l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~-~~p~a~vivvsNP~d-----i~t~~~~~~s~ 137 (319)
T PTZ00117 69 E-DIKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKK-YCPNAFVICVTNPLD-----CMVKVFQEKSG 137 (319)
T ss_pred H-HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecChHH-----HHHHHHHHhhC
Confidence 6 6777 899886655433 234588888864 888887777899997 55566666653
No 49
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.01 E-value=0.12 Score=53.39 Aligned_cols=119 Identities=15% Similarity=0.158 Sum_probs=70.9
Q ss_pred CCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChhhhccccccCCcCCcCCCCCH
Q 011618 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASL 400 (481)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L 400 (481)
+..||.|+|||..|.++|.+++. .|+. .+.|+|.+-=..... -++.+.. .+....... ....++
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~-----~gl~------~i~LvDi~~~~~~~~~ld~~~~~-~~~~~~~~I---~~~~d~ 69 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVL-----KNLG------DVVLFDIVKNIPQGKALDISHSN-VIAGSNSKV---IGTNNY 69 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-----CCCC------eEEEEeCCCchhhHHHHHHHhhh-hccCCCeEE---EECCCH
Confidence 44799999999999999987653 4652 399999743222111 1122111 111111011 112456
Q ss_pred HHHhcccCCcEEEeecCCCCCC-------------------CHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHh
Q 011618 401 LEVVRKVKPHVLLGLSGVGGVF-------------------NEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFF 461 (481)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~F-------------------t~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~ 461 (481)
+++++ +|++|=+.+.++.- -.++++.|.+ ++..-+++--|||.. .....+++
T Consensus 70 -~~l~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~-~~p~a~~iv~sNP~d-----i~t~~~~~ 140 (321)
T PTZ00082 70 -EDIAG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKK-YCPNAFVIVITNPLD-----VMVKLLQE 140 (321)
T ss_pred -HHhCC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH-----HHHHHHHH
Confidence 56777 89998655544321 2467777754 777778888999987 44555666
Q ss_pred ccc
Q 011618 462 YLM 464 (481)
Q Consensus 462 wt~ 464 (481)
++.
T Consensus 141 ~sg 143 (321)
T PTZ00082 141 HSG 143 (321)
T ss_pred hcC
Confidence 653
No 50
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.94 E-value=0.48 Score=43.69 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCccH-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChh
Q 011618 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA 380 (481)
Q Consensus 302 V~LAgll~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~ 380 (481)
.|..|++.-++..|.+++. ++|+|+|.+. .|.-+|.+|. ++|. .+..++++.
T Consensus 10 ~t~~a~~~ll~~~~~~~~g---k~v~VvGrs~~vG~pla~lL~-----~~ga-------tV~~~~~~t------------ 62 (140)
T cd05212 10 PVAKAVKELLNKEGVRLDG---KKVLVVGRSGIVGAPLQCLLQ-----RDGA-------TVYSCDWKT------------ 62 (140)
T ss_pred cHHHHHHHHHHHcCCCCCC---CEEEEECCCchHHHHHHHHHH-----HCCC-------EEEEeCCCC------------
Confidence 4678888999999998877 9999999864 4444554443 3443 566777531
Q ss_pred hhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 381 AAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 381 k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
.+|.|+++. +|++|-..+.++.|+.|+|+.
T Consensus 63 -----------------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ikp 92 (140)
T cd05212 63 -----------------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIKP 92 (140)
T ss_pred -----------------cCHHHHHhh--CCEEEEecCCCCccCHHHcCC
Confidence 248888988 999999999999999999873
No 51
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.94 E-value=0.14 Score=48.02 Aligned_cols=123 Identities=19% Similarity=0.194 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCC
Q 011618 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (481)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 377 (481)
||+.+++.+..+++..|..+++ .+++++|+ |..|..++..+... | .++++++++. . .+
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~---~~vlVlGgtG~iG~~~a~~l~~~-----g-------~~V~l~~R~~----~--~~ 65 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKG---KTAVVLGGTGPVGQRAAVLLARE-----G-------ARVVLVGRDL----E--RA 65 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCC---CEEEEECCCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH----H--HH
Confidence 6777788888888877888888 99999997 99998888877642 3 3788887641 1 11
Q ss_pred Chhhhccccc-cCCcC--CcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 378 DPAAAPFAKD-PGDFM--GLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 378 ~~~k~~fA~~-~~~~~--~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
......+... ..... ...+..++.++++. .|++|-+++ .|..+......- .....+++=++.|-+
T Consensus 66 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~diVi~at~-~g~~~~~~~~~~---~~~~~vv~D~~~~~~ 133 (194)
T cd01078 66 QKAADSLRARFGEGVGAVETSDDAARAAAIKG--ADVVFAAGA-AGVELLEKLAWA---PKPLAVAADVNAVPP 133 (194)
T ss_pred HHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc--CCEEEECCC-CCceechhhhcc---cCceeEEEEccCCCC
Confidence 1111111100 00000 00112346678876 899998765 455433222211 111236777777765
No 52
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.94 E-value=0.093 Score=53.09 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChhhhc
Q 011618 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAP 383 (481)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~ 383 (481)
.|++.+++..+..+.. ++++|+|||.||.+||..|... |. ++|+++|+. ..+ +.+. ..
T Consensus 112 ~G~~~~l~~~~~~~~~---k~vlIlGaGGaaraia~aL~~~-----G~------~~I~I~nR~----~~ka~~la---~~ 170 (284)
T PRK12549 112 SGFAESFRRGLPDASL---ERVVQLGAGGAGAAVAHALLTL-----GV------ERLTIFDVD----PARAAALA---DE 170 (284)
T ss_pred HHHHHHHHhhccCccC---CEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEECCC----HHHHHHHH---HH
Confidence 3577788755445555 9999999999999999888754 43 579999984 222 1121 11
Q ss_pred cccccCCcCCcCCCCCHHHHhcccCCcEEEeecCC
Q 011618 384 FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV 418 (481)
Q Consensus 384 fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~ 418 (481)
+.+...... .....++.+.++. +|++|.++..
T Consensus 171 l~~~~~~~~-~~~~~~~~~~~~~--aDiVInaTp~ 202 (284)
T PRK12549 171 LNARFPAAR-ATAGSDLAAALAA--ADGLVHATPT 202 (284)
T ss_pred HHhhCCCeE-EEeccchHhhhCC--CCEEEECCcC
Confidence 111000000 0012345666665 8999988754
No 53
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.86 E-value=0.086 Score=50.84 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=30.2
Q ss_pred CCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
++.||+|+|+|..|.+||..|+.+ |+ +++.++|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 339999999999999999999765 43 589999997
No 54
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.82 E-value=0.17 Score=51.91 Aligned_cols=139 Identities=13% Similarity=0.129 Sum_probs=90.4
Q ss_pred HHHHHHHHHhC--Cc---eEEEeecCCCchHHHHHHHHh--hcCCccccCcch--------hHHHHHHHHHHHHHHhCCC
Q 011618 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDDIQG--------TAGVALAGLLGTVRAQGLS 317 (481)
Q Consensus 253 defv~av~~~~--P~---~~IqfEDf~~~naf~iL~ryr--~~~~~FNDDiQG--------TaaV~LAgll~Alr~~g~~ 317 (481)
+|+++.++++- |+ .++|+==-+.-+..++++... +.+=.||..-.| =.-+|-+|++.=++-.+-+
T Consensus 75 ~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i~ 154 (285)
T PRK14191 75 AELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCSQLDGFVPATPMGVMRLLKHYHIE 154 (285)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCCCcHHHHHHHHHHhCCC
Confidence 56777777765 43 356653222234444443332 122222222111 2346778888888888888
Q ss_pred CCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCC
Q 011618 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (481)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (481)
++. .+++|+|.| ..|.-+|.+|... |. .+.+++++
T Consensus 155 l~G---k~vvVvGrs~~VG~Pla~lL~~~-----gA-------tVtv~hs~----------------------------- 190 (285)
T PRK14191 155 IKG---KDVVIIGASNIVGKPLAMLMLNA-----GA-------SVSVCHIL----------------------------- 190 (285)
T ss_pred CCC---CEEEEECCCchhHHHHHHHHHHC-----CC-------EEEEEeCC-----------------------------
Confidence 777 999999999 9999999998643 42 45666431
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
..+|.+.++. +|++|...+.|+.+++++|+ +..+|.=..
T Consensus 191 t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk-------~GavVIDvG 229 (285)
T PRK14191 191 TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK-------KGAVVVDIG 229 (285)
T ss_pred cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC-------CCcEEEEee
Confidence 1237888888 99999999999999999885 344665443
No 55
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.75 E-value=0.21 Score=51.81 Aligned_cols=109 Identities=22% Similarity=0.259 Sum_probs=69.0
Q ss_pred CCCceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCC
Q 011618 321 FADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (481)
Q Consensus 321 l~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (481)
++-.||+|.|| |..|..+|..|+. .|+ ...+.++|.+ .....--+|.+.... .. .....+..+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~~g~a~Dl~~~~~~-~~----v~~~td~~~ 69 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GAPGVAADLSHIDTP-AK----VTGYADGEL 69 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CCcccccchhhcCcC-ce----EEEecCCCc
Confidence 34479999999 9999999987652 233 2579999992 211111133322110 00 000011134
Q ss_pred HHHHhcccCCcEEEeecCCCCC--------------CCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 400 LLEVVRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
..+++++ .|++|=+.+.+.. ..++++++|.+ ++.+.||+.-|||..
T Consensus 70 ~~~~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~-~~~~~iviv~SNPvd 129 (321)
T PTZ00325 70 WEKALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVAS-SAPKAIVGIVSNPVN 129 (321)
T ss_pred hHHHhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH
Confidence 5788988 8988855555322 45688889964 888999999999998
No 56
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.40 E-value=0.098 Score=56.01 Aligned_cols=122 Identities=14% Similarity=0.182 Sum_probs=72.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHH-HcCCChhhhcCeEEEEeccceeecCC-CCCChhhhcccccc-CCcCCcCCCCCH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAAR-MAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDP-GDFMGLREGASL 400 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~-~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fA~~~-~~~~~~~~~~~L 400 (481)
.||+|+||||+ -... ++..+.. ...++ -+.|||+|-+- ..| .-+...-+.+++.. .++. .....++
T Consensus 1 ~KI~iIGaGS~--~tp~-li~~l~~~~~~l~----~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~-v~~t~d~ 69 (419)
T cd05296 1 MKLTIIGGGSS--YTPE-LIEGLIRRYEELP----VTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIK-VHLTTDR 69 (419)
T ss_pred CEEEEECCchH--hHHH-HHHHHHhccccCC----CCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeE-EEEeCCH
Confidence 38999999996 3334 4444442 23343 26899999852 222 11111112222221 1211 1134679
Q ss_pred HHHhcccCCcEEEeecCCCCC----------------------------------CCHHHHHHhhhcCCCCCEEEecCCC
Q 011618 401 LEVVRKVKPHVLLGLSGVGGV----------------------------------FNEEVLKAMRESDSVKPAIFAMSNP 446 (481)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~----------------------------------Ft~evv~~Ma~~~~erPIIFaLSNP 446 (481)
.||+++ +|.+|-.-.++|. .=.++++.|. +++...+|+=.|||
T Consensus 70 ~~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~-~~~Pda~lin~TNP 146 (419)
T cd05296 70 REALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVE-ELAPDAWLINFTNP 146 (419)
T ss_pred HHHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHH-HHCCCeEEEEecCH
Confidence 999999 7888744433331 1237778885 48999999999999
Q ss_pred CCCCCCCCCHHHHHhccc
Q 011618 447 TMNGLFSCCVTTFFFYLM 464 (481)
Q Consensus 447 t~~aE~~~t~eda~~wt~ 464 (481)
.. +..+-+++++.
T Consensus 147 ~~-----ivt~a~~k~~~ 159 (419)
T cd05296 147 AG-----IVTEAVLRHTG 159 (419)
T ss_pred HH-----HHHHHHHHhcc
Confidence 98 55556667763
No 57
>PLN02928 oxidoreductase family protein
Probab=93.35 E-value=0.89 Score=47.46 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=76.5
Q ss_pred chhHHHHHHHHHHHHHHh------------CCC-CCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEE
Q 011618 297 QGTAGVALAGLLGTVRAQ------------GLS-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFL 363 (481)
Q Consensus 297 QGTaaV~LAgll~Alr~~------------g~~-l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~l 363 (481)
+.+|--+++.+++.+|-. +.+ -.+|.+.++.|+|.|..|..+|+.+... |+ +|+.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 345666667676666632 111 1245569999999999999999998754 43 6888
Q ss_pred EeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCE
Q 011618 364 LDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPA 439 (481)
Q Consensus 364 vD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~~erPI 439 (481)
+|+.. ..........+......... .. ....+|.|+++. .|+++-.-- ..+.|+++.+..|. +..+
T Consensus 188 ~dr~~--~~~~~~~~~~~~~~~~~~~~-~~-~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk----~ga~ 257 (347)
T PLN02928 188 TRRSW--TSEPEDGLLIPNGDVDDLVD-EK-GGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK----KGAL 257 (347)
T ss_pred ECCCC--Chhhhhhhcccccccccccc-cc-CcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC----CCeE
Confidence 88742 00000000000011000000 00 123579999988 899986421 24889999999993 5677
Q ss_pred EEecCCCCC
Q 011618 440 IFAMSNPTM 448 (481)
Q Consensus 440 IFaLSNPt~ 448 (481)
+.=.|.-.-
T Consensus 258 lINvaRG~l 266 (347)
T PLN02928 258 LVNIARGGL 266 (347)
T ss_pred EEECCCccc
Confidence 776664433
No 58
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.28 E-value=0.27 Score=54.12 Aligned_cols=110 Identities=20% Similarity=0.309 Sum_probs=60.3
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCC------------ChhhhccccccCC
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL------------DPAAAPFAKDPGD 390 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l------------~~~k~~fA~~~~~ 390 (481)
..|++|+|||.+|++.+...... |. +++.+|.+---...-+.+ ......|++...+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l-----GA-------~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL-----GA-------IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcch
Confidence 37999999999999987766543 41 477777641000000000 0011122222110
Q ss_pred -cCCcCCCCCHHHHhcccCCcEEEeecCCCC-----CCCHHHHHHhhhcCCCCCEEEecCCCC-CCCC
Q 011618 391 -FMGLREGASLLEVVRKVKPHVLLGLSGVGG-----VFNEEVLKAMRESDSVKPAIFAMSNPT-MNGL 451 (481)
Q Consensus 391 -~~~~~~~~~L~e~V~~vkptvLIG~S~~~g-----~Ft~evv~~Ma~~~~erPIIFaLSNPt-~~aE 451 (481)
+. ......+.+.++. +|++|.+++.|| +++++.++.|. ..-+|.=++.|. ..+|
T Consensus 233 ~~~-~~~~~~~~~~~~g--aDVVIetag~pg~~aP~lit~~~v~~mk----pGgvIVdvg~~~GG~~e 293 (509)
T PRK09424 233 EFI-KAEMALFAEQAKE--VDIIITTALIPGKPAPKLITAEMVASMK----PGSVIVDLAAENGGNCE 293 (509)
T ss_pred hHH-HHHHHHHHhccCC--CCEEEECCCCCcccCcchHHHHHHHhcC----CCCEEEEEccCCCCCcc
Confidence 00 0000112333333 899999999877 67999999994 345555577753 4457
No 59
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.05 E-value=0.16 Score=51.67 Aligned_cols=49 Identities=18% Similarity=0.442 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.|++.+++..+..+++ .+++++|||-|+.+|+-.+.. .|. ++|+++|+.
T Consensus 109 ~Gf~~~l~~~~~~~~~---k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKG---KTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCC---CEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 3578888877777777 899999999998887766543 454 589999984
No 60
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.96 E-value=0.12 Score=45.90 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=30.7
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 369 (481)
+.||+++|+|+-|.-+|+.|+.+++ ++|.++|.+=+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-----------~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-----------GKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-----------SEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-----------CceeecCCcce
Confidence 5899999999999999999988755 68999999733
No 61
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.82 E-value=0.17 Score=52.61 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=63.9
Q ss_pred CCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC---CCCCC--------hhhh--
Q 011618 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE---RKNLD--------PAAA-- 382 (481)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~---r~~l~--------~~k~-- 382 (481)
++|++ .||+|+|+|..|..+|+.|+.+++ .+|.++|.+=+ ..+ |..+- ..|.
T Consensus 20 ~~L~~---~~VlIiG~GglGs~va~~La~aGv-----------g~i~lvD~D~v-e~sNL~RQ~l~~~~d~~~g~~Ka~a 84 (338)
T PRK12475 20 RKIRE---KHVLIVGAGALGAANAEALVRAGI-----------GKLTIADRDYV-EWSNLQRQQLYTEEDAKQKKPKAIA 84 (338)
T ss_pred HhhcC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcCCcc-cccccCccccccHHHccCCccHHHH
Confidence 34555 999999999999999999987654 68999999742 211 11110 0011
Q ss_pred ---ccccccCCcC--C---cCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEe
Q 011618 383 ---PFAKDPGDFM--G---LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 442 (481)
Q Consensus 383 ---~fA~~~~~~~--~---~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFa 442 (481)
.+.+-.+..+ . .....++.+.+++ .|++|-++. ..-+..+|-.++. ....|.|++
T Consensus 85 a~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~--~DlVid~~D--~~~~r~~in~~~~-~~~ip~i~~ 147 (338)
T PRK12475 85 AKEHLRKINSEVEIVPVVTDVTVEELEELVKE--VDLIIDATD--NFDTRLLINDLSQ-KYNIPWIYG 147 (338)
T ss_pred HHHHHHHHCCCcEEEEEeccCCHHHHHHHhcC--CCEEEEcCC--CHHHHHHHHHHHH-HcCCCEEEE
Confidence 1111001100 0 0012357778876 799998763 3335566767764 457898876
No 62
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=92.80 E-value=0.22 Score=49.59 Aligned_cols=136 Identities=15% Similarity=0.153 Sum_probs=87.5
Q ss_pred CcchhHHHHHHHHHHHHHHhCCC-CCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC
Q 011618 295 DIQGTAGVALAGLLGTVRAQGLS-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE 373 (481)
Q Consensus 295 DiQGTaaV~LAgll~Alr~~g~~-l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~ 373 (481)
--+-||-=+..++-.+++..+.. ++. .|++|-|.|..|...|+.|.+... +=+-+.|++|.|...
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g---~~v~IqGfG~VG~~~a~~l~~~Ga-----------~vv~vsD~~G~i~~~ 71 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEG---KRVAIQGFGNVGSHAARFLAELGA-----------KVVAVSDSSGAIYDP 71 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTT---CEEEEEESSHHHHHHHHHHHHTTE-----------EEEEEEESSEEEEET
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCC---CEEEEECCCHHHHHHHHHHHHcCC-----------EEEEEecCceEEEcC
Confidence 34567777778888888886665 666 999999999999999999987532 346677999998864
Q ss_pred CC-CCChhhhccccccCCcCCcC-------CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH-HhhhcCCCCCEEEecC
Q 011618 374 RK-NLDPAAAPFAKDPGDFMGLR-------EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK-AMRESDSVKPAIFAMS 444 (481)
Q Consensus 374 r~-~l~~~k~~fA~~~~~~~~~~-------~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~-~Ma~~~~erPIIFaLS 444 (481)
.. +.+.......+....+.... ..-+=.+.+-.++.||||=+. .++.+|++.+. .+. +.-+||.--+
T Consensus 72 ~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A-~~~~I~~~~~~~~i~---~~akiIvegA 147 (244)
T PF00208_consen 72 DGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCA-LGNVINEDNAPSLIK---SGAKIIVEGA 147 (244)
T ss_dssp TEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEES-SSTSBSCHHHCHCHH---TT-SEEEESS
T ss_pred CCchHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEcC-CCCeeCHHHHHHHHh---ccCcEEEeCc
Confidence 42 11111111111100010000 000111134557899999884 58999999999 773 3578999999
Q ss_pred CCCC
Q 011618 445 NPTM 448 (481)
Q Consensus 445 NPt~ 448 (481)
|-..
T Consensus 148 N~p~ 151 (244)
T PF00208_consen 148 NGPL 151 (244)
T ss_dssp SSSB
T ss_pred chhc
Confidence 8654
No 63
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.80 E-value=0.044 Score=49.85 Aligned_cols=116 Identities=21% Similarity=0.330 Sum_probs=70.2
Q ss_pred ceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-ceeecCCCCCChhhhccccccCCcCCcCCCCCHH
Q 011618 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLL 401 (481)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ 401 (481)
.||.|+|| |..|..+|.+|+.. |+- ++|.|+|.+ ......--+|.+...+.-++. ....+..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l~-----~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~------~i~~~~~ 64 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GLA-----DEIVLIDINEDKAEGEALDLSHASAPLPSPV------RITSGDY 64 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TTS-----SEEEEEESSHHHHHHHHHHHHHHHHGSTEEE------EEEESSG
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CCC-----CceEEeccCcccceeeehhhhhhhhhccccc------ccccccc
Confidence 38999999 99999999988764 443 569999986 211111112333222221111 1123566
Q ss_pred HHhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcc
Q 011618 402 EVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYL 463 (481)
Q Consensus 402 e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt 463 (481)
++++. +|++|=+.+.+ |- +-+++.+++++ ++...+++-.|||.. ...+-+++.+
T Consensus 65 ~~~~~--aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~-~~p~~~vivvtNPvd-----~~t~~~~~~s 132 (141)
T PF00056_consen 65 EALKD--ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAK-YAPDAIVIVVTNPVD-----VMTYVAQKYS 132 (141)
T ss_dssp GGGTT--ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHH-HSTTSEEEE-SSSHH-----HHHHHHHHHH
T ss_pred ccccc--ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHH-hCCccEEEEeCCcHH-----HHHHHHHHhh
Confidence 77877 89999555443 31 22356666654 789999999999975 5555555543
No 64
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=92.78 E-value=0.13 Score=50.79 Aligned_cols=117 Identities=22% Similarity=0.252 Sum_probs=74.4
Q ss_pred EEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC-CCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 326 IVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 326 iv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~-r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
|.|+|| |..|.++|..++.. |. .....++++|.+.-..+. ..++.+...++ ... .. ....++.|+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~-~i---~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADI-KV---SITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCc-EE---EECCchHHH
Confidence 579999 99999999887653 31 112579999986411111 11233322222 111 11 124568899
Q ss_pred hcccCCcEEEeecCCCCC--------------CCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcc
Q 011618 404 VRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYL 463 (481)
Q Consensus 404 V~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt 463 (481)
+++ +|++|=+.+.++. .-++++++|. +++...+++-.|||.. ....-+++++
T Consensus 68 ~~~--aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~-~~~p~a~~i~~tNP~d-----~~t~~~~~~s 133 (263)
T cd00650 68 FKD--ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIE-KYSPDAWIIVVSNPVD-----IITYLVWRYS 133 (263)
T ss_pred hCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHH-HHCCCeEEEEecCcHH-----HHHHHHHHHh
Confidence 988 8998865544322 3567888885 4889999999999998 5566777775
No 65
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.70 E-value=0.25 Score=50.13 Aligned_cols=115 Identities=15% Similarity=0.208 Sum_probs=70.4
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
||.|+|||.+|..+|..++. .|+. ..|.++|++-=...+- .+|.+......... . -...+.+ .
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~~-----~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~-~----i~~~~~~-~ 65 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGIA-----DELVLIDINEEKAEGEALDLEDALAFLPSPV-K----IKAGDYS-D 65 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCcchhhHhHhhHHHHhhccCCCe-E----EEcCCHH-H
Confidence 89999999999999998754 3442 4799999852111111 12222111111110 0 0112343 4
Q ss_pred hcccCCcEEEeecCCCCC--------------CCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcc
Q 011618 404 VRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYL 463 (481)
Q Consensus 404 V~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt 463 (481)
+++ .|++|=+.+.|.. .=+++.+.|.+ ++..-+|+-.|||.. +...-+++++
T Consensus 66 l~~--aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~-~~~~~~vivvsNP~d-----~~~~~~~~~~ 131 (306)
T cd05291 66 CKD--ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKA-SGFDGIFLVASNPVD-----VITYVVQKLS 131 (306)
T ss_pred hCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEecChHH-----HHHHHHHHHh
Confidence 665 8999977776421 12566777754 888999999999997 5566666664
No 66
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.61 E-value=0.075 Score=49.26 Aligned_cols=95 Identities=21% Similarity=0.271 Sum_probs=51.7
Q ss_pred CCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-------------ceeecCCCCCChhhhccccc
Q 011618 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-------------GLITKERKNLDPAAAPFAKD 387 (481)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-------------GLi~~~r~~l~~~k~~fA~~ 387 (481)
+...||||.|+|.+|.|.++++....+ ++..+|.. ++.+...+.... +.|++.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa------------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 83 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGA------------EVVVPDERPERLRQLESLGAYFIEVDYEDHLER--KDFDKA 83 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-------------EEEEEESSHHHHHHHHHTTTEESEETTTTTTTS--B-CCHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCC------------EEEeccCCHHHHHhhhcccCceEEEcccccccc--cccchh
Confidence 445899999999999999999887544 45555552 111110000100 002221
Q ss_pred cCCcCCcCCCCCHHHHhcccCCcEEEeecC-----CCCCCCHHHHHHhh
Q 011618 388 PGDFMGLREGASLLEVVRKVKPHVLLGLSG-----VGGVFNEEVLKAMR 431 (481)
Q Consensus 388 ~~~~~~~~~~~~L~e~V~~vkptvLIG~S~-----~~g~Ft~evv~~Ma 431 (481)
...-........|.+.++. .|++|+..- .|-+||++.++.|.
T Consensus 84 ~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 84 DYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 1000000122458899988 899997533 35689999999993
No 67
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.59 E-value=0.16 Score=53.07 Aligned_cols=106 Identities=14% Similarity=0.221 Sum_probs=63.0
Q ss_pred CCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC---CC------CCChhhhc----
Q 011618 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE---RK------NLDPAAAP---- 383 (481)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~---r~------~l~~~k~~---- 383 (481)
+|++ .||+|+|+|..|..||..|+.+++ ++|.++|.+= +... |. ++-..|..
T Consensus 132 ~l~~---~~VlvvG~GG~Gs~ia~~La~~Gv-----------g~i~lvD~d~-v~~sNl~Rq~l~~~~diG~~Ka~~~~~ 196 (376)
T PRK08762 132 RLLE---ARVLLIGAGGLGSPAALYLAAAGV-----------GTLGIVDHDV-VDRSNLQRQILHTEDRVGQPKVDSAAQ 196 (376)
T ss_pred HHhc---CcEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCCE-ecchhhccccccchhhCCCcHHHHHHH
Confidence 4455 999999999999999999977644 6899999862 2211 11 11112211
Q ss_pred -cccccCCc--CCcC---CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEe
Q 011618 384 -FAKDPGDF--MGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 442 (481)
Q Consensus 384 -fA~~~~~~--~~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFa 442 (481)
+.+-.+.. .... ...++.+.++. .|++|-++... =++.++..++. ....|+|++
T Consensus 197 ~l~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vv~~~d~~--~~r~~ln~~~~-~~~ip~i~~ 256 (376)
T PRK08762 197 RLAALNPDVQVEAVQERVTSDNVEALLQD--VDVVVDGADNF--PTRYLLNDACV-KLGKPLVYG 256 (376)
T ss_pred HHHHHCCCCEEEEEeccCChHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHH-HcCCCEEEE
Confidence 11111110 0000 11245666766 89999876532 15567777765 566898887
No 68
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.55 E-value=0.19 Score=51.10 Aligned_cols=57 Identities=26% Similarity=0.257 Sum_probs=41.3
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 289 ~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
++=||=|-. |++.+++..+..+++ .+++++|||-||-+|+-.|.+. |. ++|+++|+.
T Consensus 104 l~G~NTD~~--------Gf~~~L~~~~~~~~~---k~vlilGaGGaarAi~~aL~~~-----g~------~~i~i~nR~ 160 (283)
T PRK14027 104 TTGHNTDVS--------GFGRGMEEGLPNAKL---DSVVQVGAGGVGNAVAYALVTH-----GV------QKLQVADLD 160 (283)
T ss_pred EEEEcCCHH--------HHHHHHHhcCcCcCC---CeEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCC
Confidence 344555544 477888754445556 8999999999999998777653 44 589999883
No 69
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.51 E-value=0.25 Score=43.93 Aligned_cols=113 Identities=18% Similarity=0.308 Sum_probs=66.7
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhcc
Q 011618 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF 384 (481)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~f 384 (481)
.|+.+|++..+.+++. .+++|+|+|..|..+++.+.+. |. .+++++|++- + ......+.+
T Consensus 4 ~g~~~a~~~~~~~~~~---~~i~iiG~G~~g~~~a~~l~~~-----g~------~~v~v~~r~~----~--~~~~~~~~~ 63 (155)
T cd01065 4 LGFVRALEEAGIELKG---KKVLILGAGGAARAVAYALAEL-----GA------AKIVIVNRTL----E--KAKALAERF 63 (155)
T ss_pred HHHHHHHHhhCCCCCC---CEEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCCH----H--HHHHHHHHH
Confidence 5899999988877777 9999999998888888877542 31 4788888741 1 111111122
Q ss_pred ccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCC-CHHH---HHHhhhcCCCCCEEEecC-CCCC
Q 011618 385 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVF-NEEV---LKAMRESDSVKPAIFAMS-NPTM 448 (481)
Q Consensus 385 A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~F-t~ev---v~~Ma~~~~erPIIFaLS-NPt~ 448 (481)
...... ....++.++++. +|++|-+.. ++.. .++. ...+ .+..+|+=+| +|..
T Consensus 64 ~~~~~~----~~~~~~~~~~~~--~Dvvi~~~~-~~~~~~~~~~~~~~~~----~~~~~v~D~~~~~~~ 121 (155)
T cd01065 64 GELGIA----IAYLDLEELLAE--ADLIINTTP-VGMKPGDELPLPPSLL----KPGGVVYDVVYNPLE 121 (155)
T ss_pred hhcccc----eeecchhhcccc--CCEEEeCcC-CCCCCCCCCCCCHHHc----CCCCEEEEcCcCCCC
Confidence 110000 012456676766 899997765 3433 1111 1122 3567888775 4543
No 70
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.48 E-value=0.34 Score=49.79 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccH-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-+|++..++..+.+++. .+++|+|-|- .|..+|.+|.. .| ..+.+|+++
T Consensus 139 ~PcTp~av~~ll~~~~i~l~G---k~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~----------- 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYG---LNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF----------- 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCC---CEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC-----------
Confidence 466788999999999998877 9999999998 99999998864 23 257777763
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
..+|.+.+++ +|++|-+.+.|+.|+.++|+ +..+|.=..
T Consensus 193 ------------------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk-------~gavVIDvG 231 (285)
T PRK10792 193 ------------------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK-------PGAIVIDVG 231 (285)
T ss_pred ------------------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC-------CCcEEEEcc
Confidence 1248888988 99999999999999997776 455776655
No 71
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.40 E-value=0.38 Score=49.45 Aligned_cols=83 Identities=14% Similarity=0.258 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccH-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-.|++..++-.+-+++. .+++|+|.+- .|..+|.+|... | ..+.+|+++
T Consensus 144 ~PcTp~av~~ll~~~~i~l~G---k~vvViGrs~iVGkPla~lL~~~-----~-------atVtv~hs~----------- 197 (287)
T PRK14176 144 VPCTPHGVIRALEEYGVDIEG---KNAVIVGHSNVVGKPMAAMLLNR-----N-------ATVSVCHVF----------- 197 (287)
T ss_pred CCCcHHHHHHHHHHcCCCCCC---CEEEEECCCcccHHHHHHHHHHC-----C-------CEEEEEecc-----------
Confidence 456888999999999988877 9999999988 999999988642 3 246677642
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (481)
..+|.+.+++ +|++|-..|.|+.+++++|+
T Consensus 198 ------------------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 ------------------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1247888888 99999999999999999776
No 72
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=92.40 E-value=0.22 Score=50.30 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=62.7
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHhCC--CCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 289 FCMFNDDIQGTAGVALAGLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 289 ~~~FNDDiQGTaaV~LAgll~Alr~~g~--~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
+.=+|=|-.| ++.+++..+. ++++ .+++++|||.||-+|+..|.+. |. ++|+++++
T Consensus 100 l~G~NTD~~G--------~~~~l~~~~~~~~~~~---k~vlvlGaGGaarai~~aL~~~-----G~------~~i~I~nR 157 (282)
T TIGR01809 100 WKGDNTDWDG--------IAGALANIGKFEPLAG---FRGLVIGAGGTSRAAVYALASL-----GV------TDITVINR 157 (282)
T ss_pred EEEecCCHHH--------HHHHHHhhCCccccCC---ceEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEEeC
Confidence 4457777655 7778876553 4556 9999999999998888777653 54 58999987
Q ss_pred cceeecCC-CCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 011618 367 DGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (481)
Q Consensus 367 ~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (481)
. .+| ..|.+ .|.... ..........+.+++.. +|++|.++..+-.++.+.+.
T Consensus 158 t----~~ka~~La~---~~~~~~-~~~~~~~~~~~~~~~~~--~DiVInaTp~g~~~~~~~l~ 210 (282)
T TIGR01809 158 N----PDKLSRLVD---LGVQVG-VITRLEGDSGGLAIEKA--AEVLVSTVPADVPADYVDLF 210 (282)
T ss_pred C----HHHHHHHHH---HhhhcC-cceeccchhhhhhcccC--CCEEEECCCCCCCCCHHHhh
Confidence 3 222 11211 111100 00000000123344444 89999998876556655443
No 73
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.35 E-value=0.59 Score=43.74 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=67.9
Q ss_pred CCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCC
Q 011618 319 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGA 398 (481)
Q Consensus 319 ~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~ 398 (481)
.+|.+++|.|+|.|..|..+|+++....+ +|+.+|+..--.. .+.... ....
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~------------~V~~~d~~~~~~~----------~~~~~~------~~~~ 83 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM------------RVIGYDRSPKPEE----------GADEFG------VEYV 83 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-------------EEEEEESSCHHHH----------HHHHTT------EEES
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc------------eeEEecccCChhh----------hccccc------ceee
Confidence 34555999999999999999999986544 7888988532110 111110 0134
Q ss_pred CHHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcccC
Q 011618 399 SLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYLMA 465 (481)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt~g 465 (481)
+|.|+++. .|+++=.-. .-+.|+++.++.|. +..++.-.|.-.- +..++.+++-+.
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk----~ga~lvN~aRG~~-----vde~aL~~aL~~ 143 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK----PGAVLVNVARGEL-----VDEDALLDALES 143 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST----TTEEEEESSSGGG-----B-HHHHHHHHHT
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc----cceEEEeccchhh-----hhhhHHHHHHhh
Confidence 69999988 888874321 13889999999993 5667776665444 334555555443
No 74
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=92.24 E-value=0.27 Score=40.58 Aligned_cols=95 Identities=15% Similarity=0.215 Sum_probs=60.6
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEE-eccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL-DKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lv-D~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
||.|+|+|..|.++++.+... |. ...+|+++ +++ .+...+.++.|... ....+..|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~------~~~~~~~~~~~~~~-------~~~~~~~~~ 58 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS------PEKAAELAKEYGVQ-------ATADDNEEA 58 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS------HHHHHHHHHHCTTE-------EESEEHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc------HHHHHHHHHhhccc-------cccCChHHh
Confidence 789999999999999888754 43 12577755 552 01122222222211 012369999
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCC
Q 011618 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (481)
Q Consensus 404 V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNP 446 (481)
++. +|++| ++- +...-+++.+++ +...+..+|..++||
T Consensus 59 ~~~--advvi-lav-~p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 59 AQE--ADVVI-LAV-KPQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH--TSEEE-E-S--GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred hcc--CCEEE-EEE-CHHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 997 89888 554 455566788887 346789999998886
No 75
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.22 E-value=0.07 Score=48.91 Aligned_cols=88 Identities=18% Similarity=0.358 Sum_probs=50.1
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhh--ccccccCCc-CCcCCCCCHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA--PFAKDPGDF-MGLREGASLL 401 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~--~fA~~~~~~-~~~~~~~~L~ 401 (481)
||.|+|||+.|.++|..+... | .++.|.+++.-..+ .+..... .|.... .. ....-..+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~---~i~~~~~n~~~~~~~-~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE---EINETRQNPKYLPGI-KLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH---HHHHHTSETTTSTTS-BEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH---HHHHhCCCCCCCCCc-ccCcccccccCHH
Confidence 799999999999999988754 4 36777776531111 1111111 111100 00 0011245799
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhh
Q 011618 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRE 432 (481)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~ 432 (481)
+++++ +|++| +. +|--+-+++++.++.
T Consensus 65 ~a~~~--ad~Ii-ia-vPs~~~~~~~~~l~~ 91 (157)
T PF01210_consen 65 EALED--ADIII-IA-VPSQAHREVLEQLAP 91 (157)
T ss_dssp HHHTT---SEEE-E--S-GGGHHHHHHHHTT
T ss_pred HHhCc--ccEEE-ec-ccHHHHHHHHHHHhh
Confidence 99988 78776 33 355567889998864
No 76
>PRK05086 malate dehydrogenase; Provisional
Probab=92.18 E-value=0.43 Score=48.97 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=67.2
Q ss_pred ceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChhhhccccccCCcCCcCCCCCHH
Q 011618 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 401 (481)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~ 401 (481)
.||+|+|| |..|..+|.++... .+. -..+.++|++-. ..+. -++.+. +......+ ....++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-----~~~~~i~~-~~~~d~~ 64 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-----PTAVKIKG-FSGEDPT 64 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-----CCCceEEE-eCCCCHH
Confidence 38999999 99999999887542 121 146889997522 1110 022210 00000000 0134678
Q ss_pred HHhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 402 EVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 402 e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
+++++ .|++|=+.+.+ |. ..++++++|.+ ++.+.+|+-.|||..
T Consensus 65 ~~l~~--~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~-~~~~~ivivvsNP~D 122 (312)
T PRK05086 65 PALEG--ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAK-TCPKACIGIITNPVN 122 (312)
T ss_pred HHcCC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCchH
Confidence 88888 89988666653 31 56789999965 899999999999984
No 77
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.08 E-value=0.54 Score=48.33 Aligned_cols=115 Identities=16% Similarity=0.254 Sum_probs=72.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChhhhccccccCCcCCcCCCCCHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (481)
.||.|+|||..|..+|..|+. .|+- ..|.++|.+-=..++. .+|.+.. +|-+.. .. ...+. +
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~~-----~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~-~i----~~~~~-~ 69 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGIA-----DELVIIDINKEKAEGDAMDLSHAV-PFTSPT-KI----YAGDY-S 69 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCCchhHHHHHHHHhhc-cccCCe-EE----EeCCH-H
Confidence 699999999999999998764 3442 5799999832111111 1333322 221111 10 12344 4
Q ss_pred HhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcc
Q 011618 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYL 463 (481)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt 463 (481)
.+++ .|++|=+.+.| |- +=+++++.|.+ ++...+|+-.|||.. +...-+++++
T Consensus 70 ~~~~--adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~-~~~~~~vivvsNP~d-----~~~~~~~k~s 136 (315)
T PRK00066 70 DCKD--ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMA-SGFDGIFLVASNPVD-----ILTYATWKLS 136 (315)
T ss_pred HhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCcHH-----HHHHHHHHHh
Confidence 5777 89999666553 31 11456777754 788899999999997 5566777776
No 78
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=92.06 E-value=0.99 Score=47.99 Aligned_cols=53 Identities=26% Similarity=0.402 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
.|=-+++.+++..|..|..|.+ .++.|+|.|..|..+|+.+... |+ +++.+|.
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~g---ktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp 147 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAE---RTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDP 147 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCc---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 3445688889888888887777 9999999999999999998765 43 6788886
No 79
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.05 E-value=0.34 Score=46.48 Aligned_cols=107 Identities=15% Similarity=0.242 Sum_probs=63.0
Q ss_pred CCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC---------CCCChhhhcccc-
Q 011618 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER---------KNLDPAAAPFAK- 386 (481)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r---------~~l~~~k~~fA~- 386 (481)
+|.+ .||+|+|+|..|.-+|+.|+.+ |+ ++|+++|.+=+ .... +++-..|..-+.
T Consensus 18 kl~~---~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d~v-e~sNL~Rq~l~~~~diG~~Ka~~~~~ 82 (202)
T TIGR02356 18 RLLN---SHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDDHV-DLSNLQRQILFTEEDVGRPKVEVAAQ 82 (202)
T ss_pred HhcC---CCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCCEE-cccchhhhhccChhhCCChHHHHHHH
Confidence 4555 9999999999999999998766 43 68999999722 2111 011111211111
Q ss_pred ---ccCC---cCCcC---CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEec
Q 011618 387 ---DPGD---FMGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAM 443 (481)
Q Consensus 387 ---~~~~---~~~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaL 443 (481)
..++ +.... ...++.+.++. .|++|.+.. ..=++.++..++. ....|.|++-
T Consensus 83 ~l~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vi~~~d--~~~~r~~l~~~~~-~~~ip~i~~~ 143 (202)
T TIGR02356 83 RLRELNSDIQVTALKERVTAENLELLINN--VDLVLDCTD--NFATRYLINDACV-ALGTPLISAA 143 (202)
T ss_pred HHHHhCCCCEEEEehhcCCHHHHHHHHhC--CCEEEECCC--CHHHHHHHHHHHH-HcCCCEEEEE
Confidence 1111 00000 11235666766 899998764 3335666777765 5568998864
No 80
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.99 E-value=0.44 Score=49.35 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-+|++.=++-.|.+++. ++|+|+|.| ..|..+|.+|... | ..+.+++++
T Consensus 139 ~PcTp~aii~lL~~~~i~l~G---k~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~----------- 192 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTG---KHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR----------- 192 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCC---CEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC-----------
Confidence 355778888888889988777 999999996 9999999999754 4 257777643
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC-CC
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS-NP 446 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS-NP 446 (481)
..++.|+++. +|++|-+-+.++.+++++++ +..||.=.| |+
T Consensus 193 ------------------t~~l~e~~~~--ADIVIsavg~~~~v~~~~ik-------~GaiVIDvgin~ 234 (301)
T PRK14194 193 ------------------STDAKALCRQ--ADIVVAAVGRPRLIDADWLK-------PGAVVIDVGINR 234 (301)
T ss_pred ------------------CCCHHHHHhc--CCEEEEecCChhcccHhhcc-------CCcEEEEecccc
Confidence 1248888988 89999999889999998743 456887777 54
No 81
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.98 E-value=0.2 Score=51.13 Aligned_cols=115 Identities=22% Similarity=0.226 Sum_probs=68.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCC--cCC-cCCCCCH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FMG-LREGASL 400 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~--~~~-~~~~~~L 400 (481)
.||.|+|+|..|.++|..++.. |+ -.+.++|..--+..++ ..++.+.... ... .....++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~------~~VvlvDi~~~l~~g~------a~d~~~~~~~~~~~~~i~~t~d~ 64 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL------ADLVLLDVVEGIPQGK------ALDMYEASPVGGFDTKVTGTNNY 64 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCCCChhHHH------HHhhhhhhhccCCCcEEEecCCH
Confidence 4899999999999999987643 43 1499999832211111 1111111100 000 1123567
Q ss_pred HHHhcccCCcEEEeecCCC---C-C------CC----HHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhccc
Q 011618 401 LEVVRKVKPHVLLGLSGVG---G-V------FN----EEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYLM 464 (481)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~---g-~------Ft----~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt~ 464 (481)
.+ ++. .|++|=+.+.| | . ++ +++++.|.+ ++...+|+-.|||.. +...-++++++
T Consensus 65 ~~-~~~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~-~~p~~~iIv~tNP~d-----i~t~~~~~~sg 133 (305)
T TIGR01763 65 AD-TAN--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIME-HSPNPIIVVVSNPLD-----AMTYVAWQKSG 133 (305)
T ss_pred HH-hCC--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH-----HHHHHHHHHHC
Confidence 76 666 78887444432 2 1 33 345555654 778899999999998 66777778763
No 82
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.74 E-value=0.29 Score=49.47 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=40.5
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 289 ~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+.-||-| ..|++.+++..+..++. ++++|+|||-||.+||..+.. .|. ++|+++|+.
T Consensus 103 l~G~NTD--------~~G~~~~l~~~~~~~~~---k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 103 LTGHITD--------GLGFVRNLREHGVDVKG---KKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEecC--------HHHHHHHHHhcCCCcCC---CEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4456666 34578888876666666 899999999777777665543 454 579999874
No 83
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=91.67 E-value=0.64 Score=45.55 Aligned_cols=103 Identities=15% Similarity=0.204 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhCC---------CCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceee
Q 011618 302 VALAGLLGTVRAQGL---------SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (481)
Q Consensus 302 V~LAgll~Alr~~g~---------~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~ 371 (481)
+|-.|++-=++..+- +++. ++++|+|-+ ..|.-+|.||.. .| ..+..||++|...
T Consensus 35 CTp~avi~lL~~~~i~~~~~~~~~~l~G---K~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~ 99 (197)
T cd01079 35 CTPLAIVKILEFLGIYNKILPYGNRLYG---KTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQV 99 (197)
T ss_pred CCHHHHHHHHHHhCCcccccccCCCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccc
Confidence 345566666665543 5555 999999986 567788877764 34 3689999999887
Q ss_pred cCCCCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCC-CCHHHHHH
Q 011618 372 KERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV-FNEEVLKA 429 (481)
Q Consensus 372 ~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~-Ft~evv~~ 429 (481)
..+.....|.+ -+. . ....+|.|.++. +|++|-.-+.++. ++.|+|+.
T Consensus 100 ~~~~~~~~hs~--t~~-~-----~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik~ 148 (197)
T cd01079 100 FTRGESIRHEK--HHV-T-----DEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLKD 148 (197)
T ss_pred ccccccccccc--ccc-c-----chhhHHHHHhhh--CCEEEEccCCCCCccCHHHcCC
Confidence 65532111110 000 0 001248899998 9999999999998 99999984
No 84
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.58 E-value=0.48 Score=48.67 Aligned_cols=94 Identities=17% Similarity=0.318 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHH-HHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSA-GLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsA-g~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-.|++.-++-.+.+++. .+++|+|.|.- |.-+|.+|... |. .+.+|+++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~G---k~vvViGrs~iVGkPla~lL~~~-----~a-------tVt~~hs~----------- 191 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRG---AHAVVIGRSNIVGKPMAMLLLQA-----GA-------TVTICHSK----------- 191 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEecCC-----------
Confidence 456778888889999988888 99999999987 99999998642 32 46665431
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC-CC
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS-NP 446 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS-NP 446 (481)
..+|.+.+++ +|++|-..+.++.|+.++++ +..+|+=.. |+
T Consensus 192 ------------------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik-------~gavVIDVGin~ 233 (285)
T PRK14189 192 ------------------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK-------PGATVIDVGMNR 233 (285)
T ss_pred ------------------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC-------CCCEEEEccccc
Confidence 1348888888 99999999999999997766 344665444 44
No 85
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=91.33 E-value=1.1 Score=47.81 Aligned_cols=187 Identities=11% Similarity=0.094 Sum_probs=96.6
Q ss_pred ccCChhhHHHHHhcCCCCCeeEE-EEecCceeeccCCCCCccccccchhhhhh-----hhhcCCCCCc-eecEEeeccCC
Q 011618 153 SAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLDVY-----VAAAGINPQR-ILPVMLDVGTN 225 (481)
Q Consensus 153 s~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~iGKl~LY-----~a~gGI~P~~-~LPV~LDvGTn 225 (481)
+..|...+.++|+.. ++++. +++| +.+.-+--.+.+-.-+..+....| ..+ |+.+-. .+|+ |-
T Consensus 176 ~~~d~~el~~lL~~~---Gi~v~~~lp~-~~~~d~~~~~~~~~~~~~~~~~~~~A~~L~~~-GiP~~~~~~P~----G~- 245 (427)
T PRK02842 176 ADVVEDQLTLEFKKL---GIGVVGFLPA-RRFTELPAIGPGTVVALAQPFLSDTARALRER-GAKVLTAPFPL----GP- 245 (427)
T ss_pred CcchHHHHHHHHHHc---CCeeEEEeCC-ccHHHHhhcCcCcEEEEeCHHHHHHHHHHHHc-CCccccCCCCc----Ch-
Confidence 345556788888865 57765 7787 555554444432222222221111 344 555322 1332 21
Q ss_pred ccccccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEEEeecCCCchHHHHHHHHhhcCCccccCcchhHHHHHH
Q 011618 226 NQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALA 305 (481)
Q Consensus 226 N~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LA 305 (481)
+-.|+|++++.+.+.. ..+.+-+.+++.|.
T Consensus 246 ------------------------~~T~~~L~~la~~~g~--------~~~~~~~~~~~er~------------------ 275 (427)
T PRK02842 246 ------------------------EGTRAWLEAAAAAFGI--------DPDGLEEREAPAWE------------------ 275 (427)
T ss_pred ------------------------HHHHHHHHHHHHHhCc--------CHhHHHHHHHHHHH------------------
Confidence 2368888888887631 11222233444442
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccc
Q 011618 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA 385 (481)
Q Consensus 306 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA 385 (481)
-+..++.-..+.++. .|++|+|.+.-.+++++.|.+. .|+. +..+-+. ..+++.+...-+.+.
T Consensus 276 ~~~~~l~~~~~~l~G---krvai~g~~~~~~~la~~L~ee----lGm~-------~v~v~t~---~~~~~~~~~~~~~l~ 338 (427)
T PRK02842 276 RARKALEPYRELLRG---KRVFFLPDSQLEIPLARFLSRE----CGME-------LVEVGTP---YLNRRFLAAELALLP 338 (427)
T ss_pred HHHHHHHHhhhhcCC---cEEEEECCchhHHHHHHHHHHh----CCCE-------EEEeCCC---CCCHHHHHHHHHhcc
Confidence 244555555666666 9999999988899999998762 3553 2222110 011111111112221
Q ss_pred cccCCcCCcCCCCCHHHHhcccCCcEEEeecC
Q 011618 386 KDPGDFMGLREGASLLEVVRKVKPHVLLGLSG 417 (481)
Q Consensus 386 ~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~ 417 (481)
....-.. ..+...+++.|+..|||.|||-|.
T Consensus 339 ~~~~v~~-~~D~~~l~~~i~~~~pDllig~~~ 369 (427)
T PRK02842 339 DGVRIVE-GQDVERQLDRIRALRPDLVVCGLG 369 (427)
T ss_pred CCCEEEE-CCCHHHHHHHHHHcCCCEEEccCc
Confidence 1110000 012234688999999999999873
No 86
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=91.28 E-value=0.43 Score=46.43 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=60.3
Q ss_pred CCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC---CC------CCChhhhcccc-
Q 011618 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE---RK------NLDPAAAPFAK- 386 (481)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~---r~------~l~~~k~~fA~- 386 (481)
+|.+ .||+|+|+|+.|..+|+.|+.+++ ++|.++|.+= +... |. ++-..|..-+.
T Consensus 18 ~L~~---~~VlivG~GglGs~va~~La~~Gv-----------g~i~lvD~D~-ve~sNL~Rq~l~~~~diG~~Ka~~~~~ 82 (228)
T cd00757 18 KLKN---ARVLVVGAGGLGSPAAEYLAAAGV-----------GKLGLVDDDV-VELSNLQRQILHTEADVGQPKAEAAAE 82 (228)
T ss_pred HHhC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcCCE-EcCcccccccccChhhCCChHHHHHHH
Confidence 4455 999999999999999999987644 6899999873 3222 11 12112211111
Q ss_pred ---ccCC---cCCcCC---CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEe
Q 011618 387 ---DPGD---FMGLRE---GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 442 (481)
Q Consensus 387 ---~~~~---~~~~~~---~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFa 442 (481)
..++ +..... ..++.+.++. +|++|.+...+ -++.++..++. ....|+|++
T Consensus 83 ~l~~~np~~~i~~~~~~i~~~~~~~~~~~--~DvVi~~~d~~--~~r~~l~~~~~-~~~ip~i~~ 142 (228)
T cd00757 83 RLRAINPDVEIEAYNERLDAENAEELIAG--YDLVLDCTDNF--ATRYLINDACV-KLGKPLVSG 142 (228)
T ss_pred HHHHhCCCCEEEEecceeCHHHHHHHHhC--CCEEEEcCCCH--HHHHHHHHHHH-HcCCCEEEE
Confidence 1111 000001 1234455555 78888765422 34556666654 345788775
No 87
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.18 E-value=0.42 Score=47.36 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=62.4
Q ss_pred CCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC--CC------CCChhhhcccc--
Q 011618 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK-- 386 (481)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~--r~------~l~~~k~~fA~-- 386 (481)
+|++ .||+|+|+|..|..+|..|+.+++ ++|.++|.+=+=..+ |. ++-..|..-|.
T Consensus 21 ~L~~---~~VlvvG~GglGs~va~~La~~Gv-----------g~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~ 86 (240)
T TIGR02355 21 ALKA---SRVLIVGLGGLGCAASQYLAAAGV-----------GNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDA 86 (240)
T ss_pred HHhC---CcEEEECcCHHHHHHHHHHHHcCC-----------CEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHH
Confidence 4555 999999999999999999987644 689999987332211 11 11111111111
Q ss_pred --ccCCc---CCcC---CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 387 --DPGDF---MGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 387 --~~~~~---~~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
..++. .... ...++.+.++. .|++|-++. ..-++.++-.++. ....|+|++-+
T Consensus 87 l~~inp~v~i~~~~~~i~~~~~~~~~~~--~DlVvd~~D--~~~~r~~ln~~~~-~~~ip~v~~~~ 147 (240)
T TIGR02355 87 LTQINPHIAINPINAKLDDAELAALIAE--HDIVVDCTD--NVEVRNQLNRQCF-AAKVPLVSGAA 147 (240)
T ss_pred HHHHCCCcEEEEEeccCCHHHHHHHhhc--CCEEEEcCC--CHHHHHHHHHHHH-HcCCCEEEEEe
Confidence 11110 0000 11235566665 788887764 2335666777764 55688887643
No 88
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=91.08 E-value=0.4 Score=48.03 Aligned_cols=49 Identities=20% Similarity=0.481 Sum_probs=36.6
Q ss_pred HHHHHHHHH-hCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 305 AGLLGTVRA-QGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 305 Agll~Alr~-~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.|++++++. .+..++. .+++|+|||.+|.+++..+.. .|. .+|+++++.
T Consensus 107 ~G~~~~l~~~~~~~~~~---k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~ 156 (278)
T PRK00258 107 IGFVRALEERLGVDLKG---KRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT 156 (278)
T ss_pred HHHHHHHHhccCCCCCC---CEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC
Confidence 447777764 4556666 999999999998888887764 343 479999884
No 89
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=91.07 E-value=0.36 Score=49.38 Aligned_cols=49 Identities=24% Similarity=0.558 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 306 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
|+..+++-.+.+. +.+++++|++|||-|+.+|+-.|.++ |. ++|+++++
T Consensus 110 G~~~~L~~~~~~~-~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NR 158 (283)
T COG0169 110 GFLRALKEFGLPV-DVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNR 158 (283)
T ss_pred HHHHHHHhcCCCc-ccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeC
Confidence 4778887755331 22338999999999999998888765 43 68999998
No 90
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.01 E-value=0.3 Score=48.82 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=26.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.||.|+|+|..|.+||..+..+ | .+++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5899999999999999887643 4 268889864
No 91
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.95 E-value=0.24 Score=51.38 Aligned_cols=61 Identities=13% Similarity=0.068 Sum_probs=39.6
Q ss_pred HHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC---CCCCC---CCHHHHHhccc
Q 011618 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NGLFS---CCVTTFFFYLM 464 (481)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~---~aE~~---~t~eda~~wt~ 464 (481)
.++-+..+|+++|..||. +.-..++-..+. +-+|=|+.=.-||.. ..|+- -|.++++++..
T Consensus 103 ~~l~~~~~~~aIlaSnTS-~l~~s~la~~~~--~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~ 169 (321)
T PRK07066 103 ERISRAAKPDAIIASSTS-GLLPTDFYARAT--HPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAM 169 (321)
T ss_pred HHHHHhCCCCeEEEECCC-ccCHHHHHHhcC--CcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHH
Confidence 455567889999999885 666666666552 556778888899965 44411 24455555444
No 92
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.93 E-value=0.81 Score=45.34 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=57.1
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCC--cCCcCCCCCHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FMGLREGASLLE 402 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~--~~~~~~~~~L~e 402 (481)
||.|+|+|+.|..+|..|..+ | .+++++++ +--.. .+.......-....+ .. .....+..+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~---~~~~~g~~~~~~~~~~~~~-~~~~~~~~~ 64 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAK---ALRERGLVIRSDHGDAVVP-GPVITDPEE 64 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHH---HHHhCCeEEEeCCCeEEec-ceeecCHHH
Confidence 799999999999999888653 3 35778877 21000 000000000000000 00 001234566
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
+++. +|++|=+. +....+++++.++....+..+|+.+.|.-.
T Consensus 65 ~~~~--~d~vilav--k~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 65 LTGP--FDLVILAV--KAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred ccCC--CCEEEEEe--cccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 5554 77666333 233578888888654456677888999864
No 93
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.90 E-value=0.66 Score=46.71 Aligned_cols=114 Identities=17% Similarity=0.206 Sum_probs=65.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCC--cCC-cCCCCCH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FMG-LREGASL 400 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~--~~~-~~~~~~L 400 (481)
.||.|+|||..|.++|..+... |+ . .++++|.+ .++ +......+.+.... ... .....+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~-----~~-----~-ev~L~D~~----~~~--~~~~~~dl~~~~~~~~~~~~i~~~~d~ 65 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK-----EL-----G-DVVLFDIV----EGV--PQGKALDIAEAAPVEGFDTKITGTNDY 65 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-----e-EEEEEECC----Cch--hHHHHHHHHhhhhhcCCCcEEEeCCCH
Confidence 4899999999999999877542 33 1 69999982 111 11111111111000 000 0112456
Q ss_pred HHHhcccCCcEEEeecCCC---C-----------CCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcc
Q 011618 401 LEVVRKVKPHVLLGLSGVG---G-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYL 463 (481)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt 463 (481)
++++. +|++|=+.+.| | -.-+++++.|.+ ++...+++-.|||.. ....-+++++
T Consensus 66 -~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~-~~~~~~viv~tNP~d-----~~~~~~~~~s 133 (307)
T PRK06223 66 -EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKK-YAPDAIVIVVTNPVD-----AMTYVALKES 133 (307)
T ss_pred -HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH-----HHHHHHHHHh
Confidence 45777 89988333333 2 123456667754 778888888899987 4455556655
No 94
>PRK14851 hypothetical protein; Provisional
Probab=90.82 E-value=0.92 Score=51.66 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=77.5
Q ss_pred CCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC--CC------CCChhhhcccc-
Q 011618 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK- 386 (481)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~--r~------~l~~~k~~fA~- 386 (481)
++|++ .||+|+|+|..|..+|..|+.+++ .+|.++|-+=+-.++ |. ++-..|..-++
T Consensus 39 ~kL~~---~~VlIvG~GGlGs~va~~Lar~GV-----------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~ 104 (679)
T PRK14851 39 ERLAE---AKVAIPGMGGVGGVHLITMVRTGI-----------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKE 104 (679)
T ss_pred HHHhc---CeEEEECcCHHHHHHHHHHHHhCC-----------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHH
Confidence 34455 999999999999999999987755 689999987433322 21 12222322222
Q ss_pred ---ccCC-c--CCcC---CCCCHHHHhcccCCcEEEeecCCCCCCC---HHHHHHhhhcCCCCCEEEecC----------
Q 011618 387 ---DPGD-F--MGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFN---EEVLKAMRESDSVKPAIFAMS---------- 444 (481)
Q Consensus 387 ---~~~~-~--~~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft---~evv~~Ma~~~~erPIIFaLS---------- 444 (481)
.-++ . .... ...++.+.+++ .|++|-+. ..|+ +..|...|. .+..|+|++-.
T Consensus 105 ~l~~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~---D~~~~~~r~~l~~~c~-~~~iP~i~~g~~G~~g~~~~~ 178 (679)
T PRK14851 105 QALSINPFLEITPFPAGINADNMDAFLDG--VDVVLDGL---DFFQFEIRRTLFNMAR-EKGIPVITAGPLGYSSAMLVF 178 (679)
T ss_pred HHHHhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECC---CCCcHHHHHHHHHHHH-HCCCCEEEeecccccceEEEE
Confidence 1111 0 0000 12356777877 89999554 3333 446666654 57899998754
Q ss_pred CCCCCCCCCCCHHHHHhcccC
Q 011618 445 NPTMNGLFSCCVTTFFFYLMA 465 (481)
Q Consensus 445 NPt~~aE~~~t~eda~~wt~g 465 (481)
+|.. .+.++.|.+.++
T Consensus 179 ~p~~-----~~~~~~~~~~~~ 194 (679)
T PRK14851 179 TPQG-----MGFDDYFNIGGK 194 (679)
T ss_pred cCCC-----CCHhHhccCCCC
Confidence 6763 777888888664
No 95
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=90.62 E-value=1.3 Score=44.88 Aligned_cols=95 Identities=17% Similarity=0.289 Sum_probs=61.0
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHh
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V 404 (481)
||-|+|.|..|..+|..|... | -++.++|++- +... .++.... ....++.|++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~~------~~~~----~l~~~g~-----~~~~s~~~~~ 54 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHDQ------DAVK----AMKEDRT-----TGVANLRELS 54 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECCH------HHHH----HHHHcCC-----cccCCHHHHH
Confidence 799999999999999988653 4 2566677621 1111 1222110 1124566655
Q ss_pred ccc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 405 RKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 405 ~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
+.. ++|++|=+- .++ ..+++++.++....+..||+-+||..+
T Consensus 55 ~~~~~~dvIi~~v-p~~-~~~~v~~~l~~~l~~g~ivid~st~~~ 97 (298)
T TIGR00872 55 QRLSAPRVVWVMV-PHG-IVDAVLEELAPTLEKGDIVIDGGNSYY 97 (298)
T ss_pred hhcCCCCEEEEEc-Cch-HHHHHHHHHHhhCCCCCEEEECCCCCc
Confidence 432 488887443 345 889999988754456789999999876
No 96
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=90.62 E-value=1.1 Score=42.37 Aligned_cols=83 Identities=17% Similarity=0.331 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCCh
Q 011618 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (481)
Q Consensus 301 aV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~ 379 (481)
-+|-.|++.-++..+-+++. .+++++|.+ ..|.-+|.||... |. .+.+++++
T Consensus 17 PcTp~aii~lL~~~~~~l~G---k~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~------------ 69 (160)
T PF02882_consen 17 PCTPLAIIELLEYYGIDLEG---KKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK------------ 69 (160)
T ss_dssp -HHHHHHHHHHHHTT-STTT----EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT------------
T ss_pred CCCHHHHHHHHHhcCCCCCC---CEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC------------
Confidence 45777888888888888777 999999998 4888888887653 32 35555553
Q ss_pred hhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 380 ~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.++. +|++|-..++|+.++.++|+.
T Consensus 70 -----------------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik~ 100 (160)
T PF02882_consen 70 -----------------TKNLQEITRR--ADIVVSAVGKPNLIKADWIKP 100 (160)
T ss_dssp -----------------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-T
T ss_pred -----------------CCcccceeee--ccEEeeeeccccccccccccC
Confidence 1247788887 999999999999999998874
No 97
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.38 E-value=0.76 Score=50.75 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=73.7
Q ss_pred cCcchhHHHHHHHHHHHHHHhCC--CCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceee
Q 011618 294 DDIQGTAGVALAGLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (481)
Q Consensus 294 DDiQGTaaV~LAgll~Alr~~g~--~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~ 371 (481)
.-|.|-.||..|+=.-.-...|. .+......|++|+|+|.+|+..+..+... |. +++.+|.+.-..
T Consensus 133 a~iAGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~~~rl 200 (511)
T TIGR00561 133 ANIAGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRPEVK 200 (511)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHH
Confidence 35666666666643332222221 11122237999999999999988777653 31 477777764311
Q ss_pred cCCCCCChh------------hhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCC-----CCCHHHHHHhhhcC
Q 011618 372 KERKNLDPA------------AAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGG-----VFNEEVLKAMRESD 434 (481)
Q Consensus 372 ~~r~~l~~~------------k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g-----~Ft~evv~~Ma~~~ 434 (481)
..-..+... ..-||+...+-....+..-+.|.++. .|++|++.-+|| +.|++.++.|..
T Consensus 201 e~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp-- 276 (511)
T TIGR00561 201 EQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA-- 276 (511)
T ss_pred HHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC--
Confidence 000011000 00122211000000011125566666 899999984444 599999999942
Q ss_pred CCCCEEEecCCCCCCCC
Q 011618 435 SVKPAIFAMSNPTMNGL 451 (481)
Q Consensus 435 ~erPIIFaLSNPt~~aE 451 (481)
.-.||--=+.|--.+|
T Consensus 277 -GsvIVDlA~d~GGn~E 292 (511)
T TIGR00561 277 -GSVIVDLAAEQGGNCE 292 (511)
T ss_pred -CCEEEEeeeCCCCCEE
Confidence 3446643344555667
No 98
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.25 E-value=0.8 Score=47.08 Aligned_cols=83 Identities=16% Similarity=0.298 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-.|++.-++-.+.+++. .+++|+|.+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~G---k~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~----------- 191 (284)
T PRK14190 138 LPCTPHGILELLKEYNIDISG---KHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK----------- 191 (284)
T ss_pred CCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC-----------
Confidence 456778888888999988777 999999985 678888888764 23 246666541
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (481)
..+|.+.++. +|++|.+.+.|+.|++++|+
T Consensus 192 ------------------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ------------------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ------------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1348889988 99999999999999999996
No 99
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.24 E-value=0.8 Score=47.04 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-+|++.=++-.+.+++. +++||+|.+ ..|.-+|.+|... |. .+.+++++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~~VG~Pla~lL~~~-----~A-------tVti~hs~----------- 190 (281)
T PRK14183 137 VPCTPLGVMELLEEYEIDVKG---KDVCVVGASNIVGKPMAALLLNA-----NA-------TVDICHIF----------- 190 (281)
T ss_pred CCCcHHHHHHHHHHcCCCCCC---CEEEEECCCCcchHHHHHHHHHC-----CC-------EEEEeCCC-----------
Confidence 456778888888888988777 999999998 8899999888642 32 34455442
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.++. +|++|-..+.|+.++.++|+.
T Consensus 191 ------------------T~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk~ 221 (281)
T PRK14183 191 ------------------TKDLKAHTKK--ADIVIVGVGKPNLITEDMVKE 221 (281)
T ss_pred ------------------CcCHHHHHhh--CCEEEEecCcccccCHHHcCC
Confidence 1237778888 999999999999999999884
No 100
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.13 E-value=0.64 Score=47.66 Aligned_cols=92 Identities=16% Similarity=0.330 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-.|++.=++-.+-+++. .+++|+|.+ .-|.-+|.++... | ..+..++++
T Consensus 132 ~PcTp~av~~ll~~~~i~l~G---k~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~----------- 185 (279)
T PRK14178 132 APCTPNGIMTLLHEYKISIAG---KRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK----------- 185 (279)
T ss_pred CCCCHHHHHHHHHHcCCCCCC---CEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC-----------
Confidence 456778888888888888777 999999998 8888888887643 3 256666653
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
..+|.+.++. +|++|+.-+.++.+|+++|+ +..+|.=.+
T Consensus 186 ------------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk-------~GavVIDVg 224 (279)
T PRK14178 186 ------------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK-------PGATVIDVG 224 (279)
T ss_pred ------------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC-------CCcEEEEee
Confidence 1248899988 99999999999999999973 455775554
No 101
>PRK08605 D-lactate dehydrogenase; Validated
Probab=89.96 E-value=1.8 Score=44.81 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=68.5
Q ss_pred chhHHHHHHHHHHHHHHh---------C-----CC--CCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCe
Q 011618 297 QGTAGVALAGLLGTVRAQ---------G-----LS--LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (481)
Q Consensus 297 QGTaaV~LAgll~Alr~~---------g-----~~--l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~ 360 (481)
+.+|=-+++.+++.+|-. | .. -.+|++++|.|+|+|..|..+|+.+..+ .|+ +
T Consensus 104 ~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~ 172 (332)
T PRK08605 104 ESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------D 172 (332)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------E
Confidence 345555677777666521 1 11 1246669999999999999999998532 243 6
Q ss_pred EEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCC
Q 011618 361 FFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSV 436 (481)
Q Consensus 361 i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~~e 436 (481)
+|.+|+.. . .. ...++. ...+|.|+++. .|+++=.-- ..++++++.++.|. +
T Consensus 173 V~~~d~~~----~-~~----~~~~~~---------~~~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk----~ 228 (332)
T PRK08605 173 VVAYDPFP----N-AK----AATYVD---------YKDTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK----K 228 (332)
T ss_pred EEEECCCc----c-Hh----HHhhcc---------ccCCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC----C
Confidence 88888742 0 00 011111 12368888877 787774421 13567777777773 4
Q ss_pred CCEEEecCC
Q 011618 437 KPAIFAMSN 445 (481)
Q Consensus 437 rPIIFaLSN 445 (481)
..++.=.|.
T Consensus 229 gailIN~sR 237 (332)
T PRK08605 229 GAVFVNCAR 237 (332)
T ss_pred CcEEEECCC
Confidence 566665554
No 102
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=89.88 E-value=2.2 Score=45.40 Aligned_cols=54 Identities=26% Similarity=0.360 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 298 GTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
..|=-+++.+++..|..|..|.+ .+|.|+|.|..|..+|+.+... |+ ++..+|.
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~g---ktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp 147 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHD---RTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDP 147 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCC---CEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 34555788888888877877776 9999999999999999998765 43 6778885
No 103
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.67 E-value=0.29 Score=47.52 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=30.1
Q ss_pred CCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
++.||+|+|+|..|..||..|+.+ |+ .+|.++|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 339999999999999999999765 44 689999987
No 104
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.59 E-value=0.94 Score=45.85 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=26.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+|.|+|+|..|.++|..+... |. +++++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCC
Confidence 3799999999999999988764 43 57888874
No 105
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=89.57 E-value=0.39 Score=51.86 Aligned_cols=110 Identities=23% Similarity=0.271 Sum_probs=66.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHH-cCCChhhhcCeEEEEeccceeecCCC-CCChhhhcccccc-CCcCCcCCCCCH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARM-AGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDP-GDFMGLREGASL 400 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~-~Gls~eeA~~~i~lvD~~GLi~~~r~-~l~~~k~~fA~~~-~~~~~~~~~~~L 400 (481)
.||+|+||||+ -+..|+..+... ..++. ..|+|+|-+. +|- -+...-+.+++.. .++. .....++
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~~----~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~-v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFPL----RELVLYDIDA----ERQEKVAEAVKILFKENYPEIK-FVYTTDP 68 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCCC----CEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeE-EEEECCH
Confidence 38999999996 444555555533 34542 6899999753 221 1222222232221 1211 1134679
Q ss_pred HHHhcccCCcEEE---------------------eec-----CCCCC--------CCHHHHHHhhhcCCCCCEEEecCCC
Q 011618 401 LEVVRKVKPHVLL---------------------GLS-----GVGGV--------FNEEVLKAMRESDSVKPAIFAMSNP 446 (481)
Q Consensus 401 ~e~V~~vkptvLI---------------------G~S-----~~~g~--------Ft~evv~~Ma~~~~erPIIFaLSNP 446 (481)
.||+++ +|.+| |+- +.+|. .-.++++.|. +++...+++-.|||
T Consensus 69 ~eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~-~~~pda~lin~tNP 145 (437)
T cd05298 69 EEAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIE-KYSPDAWILNYSNP 145 (437)
T ss_pred HHHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHH-HHCCCeEEEEecCc
Confidence 999999 88877 221 22232 2357788885 48999999999999
Q ss_pred CC
Q 011618 447 TM 448 (481)
Q Consensus 447 t~ 448 (481)
..
T Consensus 146 ~~ 147 (437)
T cd05298 146 AA 147 (437)
T ss_pred HH
Confidence 97
No 106
>PRK08374 homoserine dehydrogenase; Provisional
Probab=89.56 E-value=2.2 Score=44.30 Aligned_cols=109 Identities=15% Similarity=0.161 Sum_probs=65.4
Q ss_pred ceEEEeCccHHHHHHHHHHHH---HHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhh-hccccccC---CcCC--c
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQ---AAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA-APFAKDPG---DFMG--L 394 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~---~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k-~~fA~~~~---~~~~--~ 394 (481)
.+|.++|.|..|.+++++|.+ .+.++.|... +=+-+.|++|-+...+. ++..+ ..+.+... .+.. .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~G-id~~~l~~~~~~~~~~~~~~~~~~ 77 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPED-IDLREAKEVKENFGKLSNWGNDYE 77 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCC-CChHHHHHhhhccCchhhcccccc
Confidence 689999999999999999987 3333345432 22456799998876542 33211 11222111 1100 0
Q ss_pred CCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEE
Q 011618 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (481)
Q Consensus 395 ~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIF 441 (481)
....++.|.++...+||+|-+++ +.. ..++++...+ +..++|.
T Consensus 78 ~~~~~~~ell~~~~~DVvVd~t~-~~~-a~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 78 VYNFSPEEIVEEIDADIVVDVTN-DKN-AHEWHLEALK--EGKSVVT 120 (336)
T ss_pred ccCCCHHHHHhcCCCCEEEECCC-cHH-HHHHHHHHHh--hCCcEEE
Confidence 01137889998778999999985 333 3444444422 5788885
No 107
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.44 E-value=1.5 Score=45.45 Aligned_cols=121 Identities=16% Similarity=0.128 Sum_probs=76.7
Q ss_pred eEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce--eecC-CCCCChhhhccccccCCcCCcCCCCCH
Q 011618 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKE-RKNLDPAAAPFAKDPGDFMGLREGASL 400 (481)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL--i~~~-r~~l~~~k~~fA~~~~~~~~~~~~~~L 400 (481)
||.|.|| |..|..+|..|+. .|+-.|+-...+.|+|.+.- ..++ .-+|.+...++.+.. . ...+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~-~-----i~~~~ 70 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGV-V-----ITTDP 70 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCc-E-----EecCh
Confidence 8999999 9999999987764 34432222346999998642 1111 124444433333221 1 12457
Q ss_pred HHHhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcC-CCCCEEEecCCCCCCCCCCCCHHHHHhccc
Q 011618 401 LEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESD-SVKPAIFAMSNPTMNGLFSCCVTTFFFYLM 464 (481)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-~erPIIFaLSNPt~~aE~~~t~eda~~wt~ 464 (481)
.|++++ .|++|=+.+.| |- .-+++++.|.+ + +...||+-.|||.. +..--+++++.
T Consensus 71 ~~~~~~--aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~-~~~~~~iiivvsNPvD-----~~t~~~~k~sg 141 (323)
T cd00704 71 EEAFKD--VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNK-VAKPTVKVLVVGNPAN-----TNALIALKNAP 141 (323)
T ss_pred HHHhCC--CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHH-hCCCCeEEEEeCCcHH-----HHHHHHHHHcC
Confidence 888988 89888555543 31 12567777754 7 48999998999987 55556777765
No 108
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.36 E-value=0.16 Score=55.63 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=28.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCe
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~ 360 (481)
.+|+|+|||-||+..|++|.+.+. .+..=|||.|
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 689999999999999999999865 2556677775
No 109
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.27 E-value=0.99 Score=46.38 Aligned_cols=139 Identities=18% Similarity=0.214 Sum_probs=89.9
Q ss_pred HHHHHHHHHhC--Cc---eEEEeecCCCchHHHHHHHHhh--cCCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 011618 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYRK--RFCMFNDDI--------QGTAGVALAGLLGTVRAQGLS 317 (481)
Q Consensus 253 defv~av~~~~--P~---~~IqfEDf~~~naf~iL~ryr~--~~~~FNDDi--------QGTaaV~LAgll~Alr~~g~~ 317 (481)
+||++.+++.- |+ .++|+==...-+..++++...- .+=.||..- .+=.-+|-+|++.=++-.+-+
T Consensus 76 ~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~ 155 (284)
T PRK14179 76 EELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWSGRPVMIPCTPAGIMEMFREYNVE 155 (284)
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCCC
Confidence 56777777664 53 3666432222333444433321 122222111 122456777888888888988
Q ss_pred CCCCCCceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCC
Q 011618 318 LTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (481)
Q Consensus 318 l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (481)
++. .+++|+|. |..|.-+|.+|..+ |. .+.++.++
T Consensus 156 l~G---k~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~----------------------------- 191 (284)
T PRK14179 156 LEG---KHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR----------------------------- 191 (284)
T ss_pred CCC---CEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-----------------------------
Confidence 777 99999999 99999999999753 42 34444211
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
..+|.++++. +|++|-.-+.++.+++++++ +..+|.=.+
T Consensus 192 t~~l~~~~~~--ADIVI~avg~~~~v~~~~ik-------~GavVIDvg 230 (284)
T PRK14179 192 TRNLAEVARK--ADILVVAIGRGHFVTKEFVK-------EGAVVIDVG 230 (284)
T ss_pred CCCHHHHHhh--CCEEEEecCccccCCHHHcc-------CCcEEEEec
Confidence 1258888988 99999999999999998744 456776555
No 110
>PRK05442 malate dehydrogenase; Provisional
Probab=89.16 E-value=1.4 Score=45.73 Aligned_cols=123 Identities=17% Similarity=0.130 Sum_probs=74.5
Q ss_pred ceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce---eecCCCCCChhhhccccccCCcCCcCCCCC
Q 011618 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL---ITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (481)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL---i~~~r~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (481)
-||.|+|| |..|..+|-.|+.... .+. .+. ..|.|+|.+.- +....-+|.+...++-... . -..+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~--~~~--~~~-~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~-~-----i~~~ 73 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDM--LGK--DQP-VILQLLEIPPALKALEGVVMELDDCAFPLLAGV-V-----ITDD 73 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhh--cCC--CCc-cEEEEEecCCcccccceeehhhhhhhhhhcCCc-E-----EecC
Confidence 58999998 9999999887776433 110 011 27999998532 1111124544443443221 1 1234
Q ss_pred HHHHhcccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCC-CCCEEEecCCCCCCCCCCCCHHHHHhccc
Q 011618 400 LLEVVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDS-VKPAIFAMSNPTMNGLFSCCVTTFFFYLM 464 (481)
Q Consensus 400 L~e~V~~vkptvLIG~S~~---~g~-----------Ft~evv~~Ma~~~~-erPIIFaLSNPt~~aE~~~t~eda~~wt~ 464 (481)
..+.+++ .|++|=+.+. +|- .=+++++.+.+ ++ ...||+-.|||.. +..--+++++.
T Consensus 74 ~y~~~~d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~-~~~~~~iiivvsNPvD-----v~t~v~~k~s~ 145 (326)
T PRK05442 74 PNVAFKD--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNE-VAARDVKVLVVGNPAN-----TNALIAMKNAP 145 (326)
T ss_pred hHHHhCC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEeCCchH-----HHHHHHHHHcC
Confidence 6677888 8988844443 341 22445566643 45 6999999999987 66667777763
Q ss_pred C
Q 011618 465 A 465 (481)
Q Consensus 465 g 465 (481)
|
T Consensus 146 g 146 (326)
T PRK05442 146 D 146 (326)
T ss_pred C
Confidence 3
No 111
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=89.15 E-value=0.66 Score=46.99 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=40.3
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 289 ~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+.=||=|-. |++.+++..+.+. . .+++++|||-|+.+|+-.|.+. |. ++|+++++.
T Consensus 100 l~G~NTD~~--------Gf~~~L~~~~~~~-~---~~vlilGaGGaarAi~~aL~~~-----g~------~~i~i~nR~ 155 (272)
T PRK12550 100 LKAYNTDYI--------AIAKLLASYQVPP-D---LVVALRGSGGMAKAVAAALRDA-----GF------TDGTIVARN 155 (272)
T ss_pred EEEEecCHH--------HHHHHHHhcCCCC-C---CeEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEeCC
Confidence 444555544 4777887666542 4 5999999999999998777643 44 579999884
No 112
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.06 E-value=2.4 Score=43.87 Aligned_cols=123 Identities=16% Similarity=0.182 Sum_probs=75.7
Q ss_pred ceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccee--ecCC-CCCChhhhccccccCCcCCcCCCCC
Q 011618 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (481)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (481)
-||+|.|| |..|..+|..|+.. |+-..+....++++|.+.-. ..+. -++.+...++..+. ....+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~------~~~~~ 71 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSV------VATTD 71 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCc------eecCC
Confidence 58999999 99999999987753 32100111379999985421 1111 12222221221111 12357
Q ss_pred HHHHhcccCCcEEEeecCCCCC--CC------------HHHHHHhhhcCC-CCCEEEecCCCCCCCCCCCCHHHHHhccc
Q 011618 400 LLEVVRKVKPHVLLGLSGVGGV--FN------------EEVLKAMRESDS-VKPAIFAMSNPTMNGLFSCCVTTFFFYLM 464 (481)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~g~--Ft------------~evv~~Ma~~~~-erPIIFaLSNPt~~aE~~~t~eda~~wt~ 464 (481)
+.+++++ +|++|=+.+.+.. -| +++++.|.+ ++ ..-||+-.|||.. ...--+++++.
T Consensus 72 ~~~~l~~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~-~~~~~~iiivvsNPvD-----~~t~~~~k~~~ 143 (325)
T cd01336 72 PEEAFKD--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDK-YAKKNVKVLVVGNPAN-----TNALILLKYAP 143 (325)
T ss_pred HHHHhCC--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEecCcHH-----HHHHHHHHHcC
Confidence 8899998 9999866655422 23 566677754 64 5888999999987 66777788765
Q ss_pred C
Q 011618 465 A 465 (481)
Q Consensus 465 g 465 (481)
+
T Consensus 144 ~ 144 (325)
T cd01336 144 S 144 (325)
T ss_pred C
Confidence 4
No 113
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.65 E-value=1.5 Score=45.21 Aligned_cols=95 Identities=13% Similarity=0.219 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCCh
Q 011618 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (481)
Q Consensus 301 aV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~ 379 (481)
-+|-+|++.=++..+.+++. ++++|+|.+ ..|.-+|.||.+.+. +.| ..+..+.++
T Consensus 140 PcTp~ail~ll~~y~i~l~G---k~vvViGrS~iVG~Pla~lL~~~~~-~~~-------atVt~~hs~------------ 196 (295)
T PRK14174 140 SCTPYGILELLGRYNIETKG---KHCVVVGRSNIVGKPMANLMLQKLK-ESN-------CTVTICHSA------------ 196 (295)
T ss_pred CCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHhccc-cCC-------CEEEEEeCC------------
Confidence 35666778888888887777 999999986 578888888865322 122 245555431
Q ss_pred hhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 380 ~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
..+|.+.+++ +|++|+..+.++.|++++|+ +..+|.-.+
T Consensus 197 -----------------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk-------~GavVIDVg 235 (295)
T PRK14174 197 -----------------TKDIPSYTRQ--ADILIAAIGKARFITADMVK-------PGAVVIDVG 235 (295)
T ss_pred -----------------chhHHHHHHh--CCEEEEecCccCccCHHHcC-------CCCEEEEee
Confidence 1348899988 99999999999999999994 345665443
No 114
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=88.65 E-value=0.96 Score=45.16 Aligned_cols=101 Identities=22% Similarity=0.232 Sum_probs=58.7
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhc-----cccccCCcC-CcCCCC
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP-----FAKDPGDFM-GLREGA 398 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~-----fA~~~~~~~-~~~~~~ 398 (481)
||.|+|+|..|..+|..|... | ..++++|+..-. ....+.. +... ..+. +.....
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 63 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQ------AAEINADRENPRYLPG-IKLPDNLRATT 63 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHH------HHHHHHcCcccccCCC-CcCCCCeEEeC
Confidence 799999999999999998753 3 257788874311 1111100 0000 0000 001134
Q ss_pred CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
++.++++. +|++| ++. +....+++++.+++...+..+|..++|-..
T Consensus 64 ~~~~~~~~--~D~vi-~~v-~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 64 DLAEALAD--ADLIL-VAV-PSQALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CHHHHHhC--CCEEE-EeC-CHHHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 67788876 78777 332 234678888877543345668888887555
No 115
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=88.63 E-value=1.5 Score=44.95 Aligned_cols=117 Identities=17% Similarity=0.210 Sum_probs=69.5
Q ss_pred eEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc---eeecCCCCCChhhhccccccCCcCCcCCCCCH
Q 011618 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG---LITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (481)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G---Li~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L 400 (481)
||.|+|| |..|..+|..++.. |+. ..++++|++- .+...+.++.+....+.... .+ ....+.
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~-----g~~-----~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~-~i---~~~~d~ 67 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKE-----DVV-----KEINLISRPKSLEKLKGLRLDIYDALAAAGIDA-EI---KISSDL 67 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CCC-----CEEEEEECcccccccccccchhhhchhccCCCc-EE---EECCCH
Confidence 8999998 99999999887653 442 4799999852 11111112221100110010 11 112343
Q ss_pred HHHhcccCCcEEEeecCCC---C-----------CCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhccc
Q 011618 401 LEVVRKVKPHVLLGLSGVG---G-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYLM 464 (481)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt~ 464 (481)
+.+++ .|++|=+.+.| | .+-+++++.|.+ ++...+|+-.+||.+ +..-.+++++.
T Consensus 68 -~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~-~~~~~~viv~~npvd-----~~t~~~~~~~g 136 (309)
T cd05294 68 -SDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAE-FAPDTKILVVTNPVD-----VMTYKALKESG 136 (309)
T ss_pred -HHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEeCCchH-----HHHHHHHHhcC
Confidence 45877 89888555543 2 235677777864 778899999999987 55555665553
No 116
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=88.55 E-value=0.37 Score=52.30 Aligned_cols=124 Identities=22% Similarity=0.314 Sum_probs=79.5
Q ss_pred CCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCC-CChhhhcccccc-CCcCCcCCCCC
Q 011618 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDP-GDFMGLREGAS 399 (481)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~-l~~~k~~fA~~~-~~~~~~~~~~~ 399 (481)
+..||+|+||||.. .++++...+.+.+.++. +.|||+|-+ .+|.+ .-..-+.+.+.. .+++ .....+
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~k-v~~ttd 70 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVK-VEATTD 70 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeE-EEEecC
Confidence 34799999999974 56778777776777775 689999973 33422 111222333322 2211 123568
Q ss_pred HHHHhcccCCcEEE---------------------ee-----cCCCCCCC--------HHHHHHhhhcCCCCCEEEecCC
Q 011618 400 LLEVVRKVKPHVLL---------------------GL-----SGVGGVFN--------EEVLKAMRESDSVKPAIFAMSN 445 (481)
Q Consensus 400 L~e~V~~vkptvLI---------------------G~-----S~~~g~Ft--------~evv~~Ma~~~~erPIIFaLSN 445 (481)
+.||+++ +|.+| |+ .+.+|.|. -|+++.| ++.+...-++=.+|
T Consensus 71 ~~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m-~~~~P~Aw~lNytN 147 (442)
T COG1486 71 RREALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDM-EKVCPNAWMLNYTN 147 (442)
T ss_pred HHHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHH-HHhCCCceEEeccC
Confidence 9999999 77776 11 12223322 3788899 45899999999999
Q ss_pred CCCCCCCCCCHHHHHhccc
Q 011618 446 PTMNGLFSCCVTTFFFYLM 464 (481)
Q Consensus 446 Pt~~aE~~~t~eda~~wt~ 464 (481)
|-. + + .|-+++|+.
T Consensus 148 P~~--~--v-TeAv~r~~~ 161 (442)
T COG1486 148 PAA--I--V-TEAVRRLYP 161 (442)
T ss_pred hHH--H--H-HHHHHHhCC
Confidence 988 5 3 355666665
No 117
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.50 E-value=2.7 Score=42.54 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=26.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.||.|+|+|..|.++|..+..+ | .++++.|+.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 6899999999999999999764 4 257777764
No 118
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=88.46 E-value=4.8 Score=41.34 Aligned_cols=145 Identities=17% Similarity=0.236 Sum_probs=83.6
Q ss_pred hCCce-EEEeecCCCchHHHHHHHHhhcCCccccC---cchhHHHHHHHHHHHHHHh---------C------------C
Q 011618 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDD---IQGTAGVALAGLLGTVRAQ---------G------------L 316 (481)
Q Consensus 262 ~~P~~-~IqfEDf~~~naf~iL~ryr~~~~~FNDD---iQGTaaV~LAgll~Alr~~---------g------------~ 316 (481)
..|+. .|+.-=.+..| ..+-.--+..+.+.|-- -..+|=-+++-+++..|-. | .
T Consensus 60 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~ 138 (311)
T PRK08410 60 QLPNLKLICITATGTNN-VDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISR 138 (311)
T ss_pred hCCCCeEEEEccccccc-ccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCc
Confidence 34554 55554444443 22222122335555532 1345666777777777632 1 1
Q ss_pred CCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCC
Q 011618 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (481)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (481)
+..+|.++++.|+|-|..|-.+|+++... |+ +|+.+|+.+- ... ..+ .
T Consensus 139 ~~~~L~gktvGIiG~G~IG~~vA~~~~~f-----gm-------~V~~~d~~~~---~~~------~~~-----------~ 186 (311)
T PRK08410 139 PLGEIKGKKWGIIGLGTIGKRVAKIAQAF-----GA-------KVVYYSTSGK---NKN------EEY-----------E 186 (311)
T ss_pred cccccCCCEEEEECCCHHHHHHHHHHhhc-----CC-------EEEEECCCcc---ccc------cCc-----------e
Confidence 12467779999999999999999998654 33 6888888531 000 000 1
Q ss_pred CCCHHHHhcccCCcEEEeec----CCCCCCCHHHHHHhhhcCCCCCEEEecCC
Q 011618 397 GASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (481)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~~erPIIFaLSN 445 (481)
..+|.|+++. .|+++=.- ..-+.|+++.+..|. +..++.=.|.
T Consensus 187 ~~~l~ell~~--sDvv~lh~Plt~~T~~li~~~~~~~Mk----~~a~lIN~aR 233 (311)
T PRK08410 187 RVSLEELLKT--SDIISIHAPLNEKTKNLIAYKELKLLK----DGAILINVGR 233 (311)
T ss_pred eecHHHHhhc--CCEEEEeCCCCchhhcccCHHHHHhCC----CCeEEEECCC
Confidence 2357888777 67776321 113778888888883 4566664443
No 119
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=88.44 E-value=0.06 Score=51.85 Aligned_cols=110 Identities=20% Similarity=0.359 Sum_probs=66.7
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChhhhcccccc-CCcCCcCCCCCHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDP-GDFMGLREGASLLE 402 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fA~~~-~~~~~~~~~~~L~e 402 (481)
||+|+||||+-.. .++...+...+.++. ..|+|+|.+- +| +.....-+.+++.. .++. .....++.|
T Consensus 1 KI~iIGaGS~~~~--~~l~~~l~~~~~l~~----~ei~L~Did~----~RL~~~~~~~~~~~~~~~~~~~-v~~ttd~~e 69 (183)
T PF02056_consen 1 KITIIGAGSTYFP--LLLLGDLLRTEELSG----SEIVLMDIDE----ERLEIVERLARRMVEEAGADLK-VEATTDRRE 69 (183)
T ss_dssp EEEEETTTSCCHH--HHHHHHHHCTTTSTE----EEEEEE-SCH----HHHHHHHHHHHHHHHHCTTSSE-EEEESSHHH
T ss_pred CEEEECCchHhhH--HHHHHHHhcCccCCC----cEEEEEcCCH----HHHHHHHHHHHHHHHhcCCCeE-EEEeCCHHH
Confidence 7999999998543 455555553455543 6899999852 22 11112223333322 1221 123578999
Q ss_pred HhcccCCcEEE---------------------eecC-------CCCCCC--------HHHHHHhhhcCCCCCEEEecCCC
Q 011618 403 VVRKVKPHVLL---------------------GLSG-------VGGVFN--------EEVLKAMRESDSVKPAIFAMSNP 446 (481)
Q Consensus 403 ~V~~vkptvLI---------------------G~S~-------~~g~Ft--------~evv~~Ma~~~~erPIIFaLSNP 446 (481)
|+++ +|.+| |+-+ .+|.|. .|+.+.|. +++++.-|+=.+||
T Consensus 70 Al~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~-~~~PdAw~iNytNP 146 (183)
T PF02056_consen 70 ALEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIE-ELCPDAWLINYTNP 146 (183)
T ss_dssp HHTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHH-HHTTTSEEEE-SSS
T ss_pred HhCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHH-HhCCCcEEEeccCh
Confidence 9999 89888 3322 123332 47888894 58999999999999
Q ss_pred CC
Q 011618 447 TM 448 (481)
Q Consensus 447 t~ 448 (481)
..
T Consensus 147 ~~ 148 (183)
T PF02056_consen 147 MG 148 (183)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 120
>PRK15076 alpha-galactosidase; Provisional
Probab=88.41 E-value=0.69 Score=49.73 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=62.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeec-CCCCCChhhhccccccCCcCCcCCCCCHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~-~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (481)
.||.|+|||+.|...+ ++..+....++. -..++|+|.+-=..+ ...-+......+ ...+. .....++.+
T Consensus 2 ~KIaIIGaGsvg~~~~--~~~~i~~~~~l~----~~evvLvDid~er~~~~~~l~~~~~~~~---~~~~~-i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVFTKN--LLGDILSVPALR----DAEIALMDIDPERLEESEIVARKLAESL---GASAK-ITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHhHHH--HHHHHhhCccCC----CCEEEEECCCHHHHHHHHHHHHHHHHhc---CCCeE-EEEECCHHH
Confidence 5899999999854443 333332122332 247999997421000 000011111111 11110 012457889
Q ss_pred HhcccCCcEEEeecCCCCC-------------------------------------CCHHHHHHhhhcCCCCCEEEecCC
Q 011618 403 VVRKVKPHVLLGLSGVGGV-------------------------------------FNEEVLKAMRESDSVKPAIFAMSN 445 (481)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~-------------------------------------Ft~evv~~Ma~~~~erPIIFaLSN 445 (481)
++++ +|++|=..+++|. .=.++++.|. +++...+|+-.||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~-~~~p~a~iin~tN 148 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDME-EVCPDALLLNYVN 148 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHH-HHCCCeEEEEcCC
Confidence 9988 7888755444421 1146777774 4899999999999
Q ss_pred CCC
Q 011618 446 PTM 448 (481)
Q Consensus 446 Pt~ 448 (481)
|..
T Consensus 149 P~d 151 (431)
T PRK15076 149 PMA 151 (431)
T ss_pred hHH
Confidence 986
No 121
>PLN03139 formate dehydrogenase; Provisional
Probab=88.35 E-value=6.4 Score=42.08 Aligned_cols=166 Identities=16% Similarity=0.128 Sum_probs=97.4
Q ss_pred HhCCce-EEEeecCCCchHHHHHHHHhhcCCccccCcc---hhHHHHHHHHHHHHHHh---------C--------CCCC
Q 011618 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDIQ---GTAGVALAGLLGTVRAQ---------G--------LSLT 319 (481)
Q Consensus 261 ~~~P~~-~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQ---GTaaV~LAgll~Alr~~---------g--------~~l~ 319 (481)
...|+. .|+.-=.+..| ..+-.--+..|.+.|=--. ..|=-+++-+|+.+|-. | ..-.
T Consensus 117 ~~ap~LK~I~~~g~G~D~-iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~ 195 (386)
T PLN03139 117 KKAKNLELLLTAGIGSDH-IDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAY 195 (386)
T ss_pred hhCCCccEEEECCccccc-cCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCc
Confidence 346776 77776666665 3333223345888875322 34445688888877731 1 0123
Q ss_pred CCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCC
Q 011618 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (481)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (481)
+|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... +... + +... .....+
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~--------~~~~--~-~~~g----~~~~~~ 248 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM--------DPEL--E-KETG----AKFEED 248 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc--------chhh--H-hhcC----ceecCC
Confidence 56779999999999999999999764 33 5777887532 1000 0 0000 001236
Q ss_pred HHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcccC
Q 011618 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYLMA 465 (481)
Q Consensus 400 L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt~g 465 (481)
|.|+++. .|+++=..- .-++|+++.+..|. +..+++=.|.=.- +.-++.++.-+.
T Consensus 249 l~ell~~--sDvV~l~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aRG~i-----VDe~AL~~AL~s 307 (386)
T PLN03139 249 LDAMLPK--CDVVVINTPLTEKTRGMFNKERIAKMK----KGVLIVNNARGAI-----MDTQAVADACSS 307 (386)
T ss_pred HHHHHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC----CCeEEEECCCCch-----hhHHHHHHHHHc
Confidence 8888877 788773321 12678888888883 4566665553333 334444454443
No 122
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=88.30 E-value=4.6 Score=41.96 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHh---------C-----C--CCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeE
Q 011618 298 GTAGVALAGLLGTVRAQ---------G-----L--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (481)
Q Consensus 298 GTaaV~LAgll~Alr~~---------g-----~--~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i 361 (481)
.+|=-+++-+++.+|-. | . .-.+|++.+|.|+|.|..|..+|+.+... |. ++
T Consensus 105 ~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~-----G~-------~V 172 (330)
T PRK12480 105 TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGF-----GA-------TI 172 (330)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EE
Confidence 45555677777777642 1 1 11356669999999999999999988653 43 68
Q ss_pred EEEecc
Q 011618 362 FLLDKD 367 (481)
Q Consensus 362 ~lvD~~ 367 (481)
+.+|+.
T Consensus 173 ~~~d~~ 178 (330)
T PRK12480 173 TAYDAY 178 (330)
T ss_pred EEEeCC
Confidence 888864
No 123
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=88.28 E-value=0.19 Score=54.97 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=20.6
Q ss_pred CceEEEeCccHHHHHHHHHHHHH
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
+.||||+|||.||++.|.-|++.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~ 43 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLEN 43 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHh
Confidence 38999999999999999999843
No 124
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=87.96 E-value=0.45 Score=45.67 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=30.6
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
+.||+|+|+|.-|.-+|+.|+.+++ ++|.++|.+=
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV-----------g~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI-----------DSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEECCc
Confidence 3999999999999999999987654 6899999873
No 125
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=87.90 E-value=1.7 Score=44.72 Aligned_cols=105 Identities=10% Similarity=0.095 Sum_probs=61.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
.+++|+|+|..|..++..+... .++ ++|+++++. ..+ .......+.+... .. .....+++++
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~--a~~~a~~~~~~~g-~~-v~~~~~~~~a 191 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK--AEALALQLSSLLG-ID-VTAATDPRAA 191 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH--HHHHHHHHHhhcC-ce-EEEeCCHHHH
Confidence 6899999999999988877542 233 578888772 111 1222222211100 00 0123679999
Q ss_pred hcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCEEEecCCCCC-CCCCCCCHH
Q 011618 404 VRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NGLFSCCVT 457 (481)
Q Consensus 404 V~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~-~aE~~~t~e 457 (481)
++. .|++|-+++. ...|+.++++.- -.|.++.--++ +.| +.++
T Consensus 192 v~~--aDiVvtaT~s~~p~i~~~~l~~g-------~~i~~vg~~~p~~rE--ld~~ 236 (326)
T TIGR02992 192 MSG--ADIIVTTTPSETPILHAEWLEPG-------QHVTAMGSDAEHKNE--IDPA 236 (326)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcCCC-------cEEEeeCCCCCCcee--cCHH
Confidence 987 9999987654 246777776542 24445543333 456 5554
No 126
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.87 E-value=1.3 Score=45.67 Aligned_cols=87 Identities=22% Similarity=0.246 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-+|++.=++-.+-+++. +++||+|.+ ..|.-+|.||..... ..| ..+..++++
T Consensus 137 ~PcTp~av~~lL~~~~i~l~G---k~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~----------- 194 (286)
T PRK14184 137 RPCTPAGVMTLLERYGLSPAG---KKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSR----------- 194 (286)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCC-----------
Confidence 456777888888999988877 999999985 578888888764210 012 246666643
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHH
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~ 428 (481)
..+|.+.++. +|++|+..+.|+.+++++|+
T Consensus 195 ------------------t~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 195 ------------------TPDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred ------------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1248889988 99999999999999999994
No 127
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.86 E-value=2 Score=44.48 Aligned_cols=105 Identities=22% Similarity=0.246 Sum_probs=66.9
Q ss_pred eEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
||.|+|| |..|..+|-.|+. .|+. ..+.|+|.+ +....--+|.+.. .+.+ ..+.....++.+.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~~-----~elvLiDi~-~a~g~alDL~~~~-~~~~----i~~~~~~~~~y~~ 65 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPLV-----SELALYDIV-NTPGVAADLSHIN-TPAK----VTGYLGPEELKKA 65 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCCC-----cEEEEEecC-ccceeehHhHhCC-Ccce----EEEecCCCchHHh
Confidence 8999999 9999999987643 3552 579999998 3221112454433 1111 0000011346788
Q ss_pred hcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 404 VRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 404 V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
+++ .|++|=+.+.| |- .-+++++.+.+ ++...+|+-.|||..
T Consensus 66 ~~d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~-~~p~a~vivvtNPvD 121 (310)
T cd01337 66 LKG--ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAK-ACPKALILIISNPVN 121 (310)
T ss_pred cCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCchh
Confidence 888 89888565553 32 22456666654 899999999999985
No 128
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.81 E-value=1 Score=44.92 Aligned_cols=32 Identities=38% Similarity=0.533 Sum_probs=26.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+||.|+|+|..|.+||..+..+ | -+++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC
Confidence 5899999999999999988754 4 258888874
No 129
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.80 E-value=1.6 Score=44.87 Aligned_cols=83 Identities=17% Similarity=0.294 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCCh
Q 011618 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (481)
Q Consensus 301 aV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~ 379 (481)
-+|-.|++.=++-.+-+++. +++||+|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 140 PcTp~avi~ll~~y~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~------------ 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTG---KNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK------------ 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 44567777778888888777 999999985 678888888764 23 246666642
Q ss_pred hhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 380 ~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.+++ +|++|...+.|+.++.|+|+.
T Consensus 193 -----------------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik~ 223 (284)
T PRK14177 193 -----------------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWISE 223 (284)
T ss_pred -----------------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcCC
Confidence 1348888888 999999999999999999884
No 130
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.77 E-value=1.6 Score=44.71 Aligned_cols=131 Identities=13% Similarity=0.180 Sum_probs=85.3
Q ss_pred HHHHHHHHHhC--Cc---eEEEeecCCCchHHHHHHHHh--hcCCccccCcch--------hHHHHHHHHHHHHHHhCCC
Q 011618 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDDIQG--------TAGVALAGLLGTVRAQGLS 317 (481)
Q Consensus 253 defv~av~~~~--P~---~~IqfEDf~~~naf~iL~ryr--~~~~~FNDDiQG--------TaaV~LAgll~Alr~~g~~ 317 (481)
+|+++.++++- |+ .++|+==...-+..++++... +.+=.||..-.| =.-+|-+|++.=++..+.+
T Consensus 76 ~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~av~~lL~~~~i~ 155 (278)
T PRK14172 76 EDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKGEKCFLPCTPNSVITLIKSLNID 155 (278)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccCccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCCC
Confidence 56777777764 53 366652111222333333322 112222222222 2456778888888889988
Q ss_pred CCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCC
Q 011618 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (481)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (481)
++. ++++|+|.+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 156 l~G---k~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~----------------------------- 191 (278)
T PRK14172 156 IEG---KEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK----------------------------- 191 (278)
T ss_pred CCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC-----------------------------
Confidence 877 999999985 578888888864 232 46666652
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.+++ +|++|-..+.|+.|++|+|+.
T Consensus 192 T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~ 222 (278)
T PRK14172 192 TKNLKEVCKK--ADILVVAIGRPKFIDEEYVKE 222 (278)
T ss_pred CCCHHHHHhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1348888888 999999999999999998873
No 131
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=87.71 E-value=0.73 Score=49.24 Aligned_cols=122 Identities=15% Similarity=0.176 Sum_probs=66.3
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhcccccc-CCcCCcCCCCCHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP-GDFMGLREGASLLEV 403 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~-~~~~~~~~~~~L~e~ 403 (481)
||.|+|||+.|.+.+- +..+.....+ +-..++++|.+-=..+ .+...-+.++... .... .....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~~----~g~eV~L~Did~e~l~---~~~~~~~~~~~~~~~~~~-I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPEL----SGSTIALMDIDEERLE---TVEILAKKIVEELGAPLK-IEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCCC----CCCEEEEECCCHHHHH---HHHHHHHHHHHhcCCCeE-EEEeCCHHHH
Confidence 7999999999888663 1111101111 1247999997421110 0100001111111 0000 0124679999
Q ss_pred hcccCCcEEEeecCCC---------------CCCC---------------------HHHHHHhhhcCCCCCEEEecCCCC
Q 011618 404 VRKVKPHVLLGLSGVG---------------GVFN---------------------EEVLKAMRESDSVKPAIFAMSNPT 447 (481)
Q Consensus 404 V~~vkptvLIG~S~~~---------------g~Ft---------------------~evv~~Ma~~~~erPIIFaLSNPt 447 (481)
+++ +|++|=.-..+ |+|. .++.+.|. +++.+.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~-~~~p~a~~i~~tNPv 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIE-ELCPDAWLLNYANPM 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHH-HHCCCCEEEEcCChH
Confidence 988 88887443321 1121 26666664 367899999999999
Q ss_pred CCCCCCCCHHHHHhccc
Q 011618 448 MNGLFSCCVTTFFFYLM 464 (481)
Q Consensus 448 ~~aE~~~t~eda~~wt~ 464 (481)
. +..+-+++.++
T Consensus 149 ~-----i~t~~~~k~~~ 160 (423)
T cd05297 149 A-----ELTWALNRYTP 160 (423)
T ss_pred H-----HHHHHHHHhCC
Confidence 8 44556666665
No 132
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.36 E-value=1.7 Score=44.74 Aligned_cols=131 Identities=13% Similarity=0.216 Sum_probs=85.6
Q ss_pred HHHHHHHHHhC--Cc---eEEEeecCCCchHHHHHHHHhh--cCCccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 011618 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYRK--RFCMFNDDI--------QGTAGVALAGLLGTVRAQGLS 317 (481)
Q Consensus 253 defv~av~~~~--P~---~~IqfEDf~~~naf~iL~ryr~--~~~~FNDDi--------QGTaaV~LAgll~Alr~~g~~ 317 (481)
+|+++.+.++- |+ .++|+==...-+..++++...- .+=.||..- .+=.-+|-+|++.=++-.|-+
T Consensus 75 ~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~ 154 (284)
T PRK14170 75 EKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFIGKDSFVPCTPAGIIELIKSTGTQ 154 (284)
T ss_pred HHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 56777777664 53 3666643333344444444321 122222111 223456677888888888988
Q ss_pred CCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCC
Q 011618 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (481)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (481)
++. ++++|+|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 155 l~G---k~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~----------------------------- 190 (284)
T PRK14170 155 IEG---KRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR----------------------------- 190 (284)
T ss_pred CCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-----------------------------
Confidence 777 999999986 578888887764 23 246666442
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.++. +|++|-..+.|+.|+.++|+.
T Consensus 191 T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk~ 221 (284)
T PRK14170 191 TKDLPQVAKE--ADILVVATGLAKFVKKDYIKP 221 (284)
T ss_pred CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1348888888 999999999999999999884
No 133
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.33 E-value=1 Score=46.93 Aligned_cols=109 Identities=17% Similarity=0.265 Sum_probs=61.4
Q ss_pred CCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC--CC------CCC--hhhhccc-
Q 011618 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLD--PAAAPFA- 385 (481)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~--r~------~l~--~~k~~fA- 385 (481)
+|+. .||+|+|+|.-|.-+|..|+.+.+ .+|.++|.+-+=..+ |. ++. ..|..-|
T Consensus 21 ~L~~---~~VlVvG~GglGs~va~~La~aGv-----------g~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~ 86 (339)
T PRK07688 21 KLRE---KHVLIIGAGALGTANAEMLVRAGV-----------GKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAK 86 (339)
T ss_pred HhcC---CcEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHH
Confidence 4455 999999999999999999887644 589999996321111 11 010 0111111
Q ss_pred ---cccCC-cC--C---cCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 386 ---KDPGD-FM--G---LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 386 ---~~~~~-~~--~---~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
+..++ .. . .-...++.+.++. .|++|-++. ..=+..++-..+. ....|.|++-+
T Consensus 87 ~~l~~inp~v~v~~~~~~~~~~~~~~~~~~--~DlVid~~D--n~~~r~~ln~~~~-~~~iP~i~~~~ 149 (339)
T PRK07688 87 KRLEEINSDVRVEAIVQDVTAEELEELVTG--VDLIIDATD--NFETRFIVNDAAQ-KYGIPWIYGAC 149 (339)
T ss_pred HHHHHHCCCcEEEEEeccCCHHHHHHHHcC--CCEEEEcCC--CHHHHHHHHHHHH-HhCCCEEEEee
Confidence 11111 00 0 0012345666766 788887764 2235556666654 45688887543
No 134
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=87.33 E-value=0.56 Score=46.53 Aligned_cols=109 Identities=15% Similarity=0.217 Sum_probs=64.4
Q ss_pred CCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC---C------CCChhhhcccc-
Q 011618 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER---K------NLDPAAAPFAK- 386 (481)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r---~------~l~~~k~~fA~- 386 (481)
+|++ .||+|+|+|..|.-+|+.|+.+++ ++|.++|.+ .|..+. . ++-..|..-|+
T Consensus 29 ~L~~---~~VliiG~GglGs~va~~La~~Gv-----------g~i~lvD~D-~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~ 93 (245)
T PRK05690 29 KLKA---ARVLVVGLGGLGCAASQYLAAAGV-----------GTLTLVDFD-TVSLSNLQRQVLHDDATIGQPKVESARA 93 (245)
T ss_pred HhcC---CeEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcCC-EECcchhhhhhcCChhhCCChHHHHHHH
Confidence 5556 999999999999999999987644 689999997 333221 1 11112221111
Q ss_pred ---ccCCcC---CcC---CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCC
Q 011618 387 ---DPGDFM---GLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (481)
Q Consensus 387 ---~~~~~~---~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN 445 (481)
..++.- ... ...++.+.++. .|++|.++..+ -++.++...+. ....|+|.+-++
T Consensus 94 ~l~~lnp~v~i~~~~~~i~~~~~~~~~~~--~DiVi~~~D~~--~~r~~ln~~~~-~~~ip~v~~~~~ 156 (245)
T PRK05690 94 ALARINPHIAIETINARLDDDELAALIAG--HDLVLDCTDNV--ATRNQLNRACF-AAKKPLVSGAAI 156 (245)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHHhc--CCEEEecCCCH--HHHHHHHHHHH-HhCCEEEEeeec
Confidence 111100 000 11235566666 89999887532 24555666654 456899986554
No 135
>PLN02602 lactate dehydrogenase
Probab=87.26 E-value=1.3 Score=46.55 Aligned_cols=115 Identities=16% Similarity=0.232 Sum_probs=72.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChhhhccccccCCcCCcCCCCCHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (481)
.||.|+|||..|..+|..|+. .|+. ..|.|+|.+-=...+. -+|.+.. +|-... .. ....+.++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l~-----~el~LiDi~~~~~~g~a~DL~~~~-~~~~~~-~i---~~~~dy~~ 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDLA-----DELALVDVNPDKLRGEMLDLQHAA-AFLPRT-KI---LASTDYAV 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCC-----CEEEEEeCCCchhhHHHHHHHhhh-hcCCCC-EE---EeCCCHHH
Confidence 399999999999999997764 3543 5799999732111111 1343332 222211 11 11234555
Q ss_pred HhcccCCcEEEeecCC---CCCCCH------------HHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcc
Q 011618 403 VVRKVKPHVLLGLSGV---GGVFNE------------EVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYL 463 (481)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~Ft~------------evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt 463 (481)
+++ +|++|=+.+. || -|+ ++++.|.+ ++...+|+-.|||.. ....-+++++
T Consensus 103 -~~d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~-~~p~~ivivvtNPvd-----v~t~~~~k~s 168 (350)
T PLN02602 103 -TAG--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAK-YSPDTILLIVSNPVD-----VLTYVAWKLS 168 (350)
T ss_pred -hCC--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCchH-----HHHHHHHHHh
Confidence 777 8999855554 34 233 66777754 889999999999997 5566677766
No 136
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.12 E-value=5.2 Score=41.16 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=29.3
Q ss_pred CCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 319 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 319 ~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+|.+++|.|+|-|..|..+|+++... |+ +++.+|+.
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~af-----G~-------~V~~~~r~ 154 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAF-----GM-------NIYAYTRS 154 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCC
Confidence 356669999999999999999876543 43 68888875
No 137
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=87.10 E-value=2.2 Score=43.09 Aligned_cols=96 Identities=18% Similarity=0.274 Sum_probs=59.7
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHh
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V 404 (481)
||.|+|.|..|..+|..|... | .+++++|+.. +..+.++...- ....++.|++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----------~~~~~~~~~g~-----~~~~~~~e~~ 54 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----------EAVEALAEEGA-----TGADSLEELV 54 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----------HHHHHHHHCCC-----eecCCHHHHH
Confidence 799999999999999998753 4 2577777741 11112222110 1234688888
Q ss_pred ccc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 405 RKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 405 ~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
+.. +||++|=+- ..+...++++..+.....+..||+-+|+-.+
T Consensus 55 ~~~~~~dvvi~~v-~~~~~~~~v~~~l~~~l~~g~ivid~st~~~ 98 (301)
T PRK09599 55 AKLPAPRVVWLMV-PAGEITDATIDELAPLLSPGDIVIDGGNSYY 98 (301)
T ss_pred hhcCCCCEEEEEe-cCCcHHHHHHHHHHhhCCCCCEEEeCCCCCh
Confidence 765 377666433 2344667777666443456788888887555
No 138
>PRK08223 hypothetical protein; Validated
Probab=87.09 E-value=0.58 Score=48.10 Aligned_cols=128 Identities=17% Similarity=0.161 Sum_probs=77.6
Q ss_pred HHHHHHHhhcCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhc
Q 011618 279 FETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR 358 (481)
Q Consensus 279 f~iL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~ 358 (481)
|..-++|..++..|..+-| ++|++ .||+|+|+|..|.-+|..|+.+++
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~---s~VlIvG~GGLGs~va~~LA~aGV----------- 51 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRN---SRVAIAGLGGVGGIHLLTLARLGI----------- 51 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhc---CCEEEECCCHHHHHHHHHHHHhCC-----------
Confidence 5666777766655544332 33445 999999999999999999988765
Q ss_pred CeEEEEeccceeecC--CC------CCChhhhcccc----ccCCcC------CcCCCCCHHHHhcccCCcEEEeecCCCC
Q 011618 359 NKFFLLDKDGLITKE--RK------NLDPAAAPFAK----DPGDFM------GLREGASLLEVVRKVKPHVLLGLSGVGG 420 (481)
Q Consensus 359 ~~i~lvD~~GLi~~~--r~------~l~~~k~~fA~----~~~~~~------~~~~~~~L~e~V~~vkptvLIG~S~~~g 420 (481)
.+|.++|.+=+=.++ |. ++-..|..-|+ .-++.- ..-...++.|.+++ .|++|=.+ .
T Consensus 52 G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~---D 126 (287)
T PRK08223 52 GKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGL---D 126 (287)
T ss_pred CeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECC---C
Confidence 689999987432222 11 12222322222 111100 00023467788877 79998433 3
Q ss_pred CC---CHHHHHHhhhcCCCCCEEEecC
Q 011618 421 VF---NEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 421 ~F---t~evv~~Ma~~~~erPIIFaLS 444 (481)
-| +.-+|-..|. ....|.|.+-+
T Consensus 127 ~~~~~~r~~ln~~c~-~~~iP~V~~~~ 152 (287)
T PRK08223 127 FFEFDARRLVFAACQ-QRGIPALTAAP 152 (287)
T ss_pred CCcHHHHHHHHHHHH-HcCCCEEEEec
Confidence 23 5677777765 55699998743
No 139
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.87 E-value=0.88 Score=46.99 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=53.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce--eecCC---CCCChhhhccccccCCcCCcCCCC
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKER---KNLDPAAAPFAKDPGDFMGLREGA 398 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL--i~~~r---~~l~~~k~~fA~~~~~~~~~~~~~ 398 (481)
.||.|+|||+-|..+|..+.+. | . ..+|..|..-. +...+ +.++. ...+ +. . ..-..
T Consensus 8 mkI~IiGaGa~G~alA~~La~~-----g-~-----v~l~~~~~~~~~~i~~~~~~~~~l~~-~~~l--~~-~---i~~t~ 69 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARR-----G-P-----TLQWVRSAETADDINDNHRNSRYLGN-DVVL--SD-T---LRATT 69 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----C-C-----EEEEeCCHHHHHHHHhcCCCcccCCC-Cccc--CC-C---eEEEC
Confidence 6899999999999999987643 3 1 23554332110 00001 01110 0000 00 0 01124
Q ss_pred CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
++.++++. +|++| ++. |--+.+++++.++....+..+|..++|-..
T Consensus 70 d~~~a~~~--aDlVi-lav-ps~~~~~vl~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 70 DFAEAANC--ADVVV-MGV-PSHGFRGVLTELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred CHHHHHhc--CCEEE-EEe-CHHHHHHHHHHHHhhcCCCCEEEEEEeCCc
Confidence 57777766 66554 332 344677888887643444545666777555
No 140
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.75 E-value=1.6 Score=45.15 Aligned_cols=92 Identities=15% Similarity=0.228 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeC-ccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-.|++.=++-.+.+++. ++|+|+| .|..|..+|.+|... |. .+.+++++ +
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~G---k~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T--- 192 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSG---LNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------T--- 192 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCC---CEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------C---
Confidence 455677888888888887777 9999999 999999999999753 43 45655431 1
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
.+|.|+++. +|++|-+-+.+..+++++++ +.-+|.=++
T Consensus 193 -------------------~~l~e~~~~--ADIVIsavg~~~~v~~~~lk-------~GavVIDvG 230 (296)
T PRK14188 193 -------------------RDLPAVCRR--ADILVAAVGRPEMVKGDWIK-------PGATVIDVG 230 (296)
T ss_pred -------------------CCHHHHHhc--CCEEEEecCChhhcchheec-------CCCEEEEcC
Confidence 137888887 89999888888888887733 445666555
No 141
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=86.66 E-value=2.4 Score=43.93 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=71.4
Q ss_pred eEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChhhhccccccCCcCCcCCCCCHHH
Q 011618 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (481)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (481)
||.|+|| |..|..+|.+|+.. |+- ..+.|+|.+. ..+. -+|.+.. ... .........++.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~-----~~~-----~elvL~Di~~--a~g~a~DL~~~~----~~~-~i~~~~~~~~~~~ 63 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ-----PYV-----SELSLYDIAG--AAGVAADLSHIP----TAA-SVKGFSGEEGLEN 63 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC-----CCC-----cEEEEecCCC--CcEEEchhhcCC----cCc-eEEEecCCCchHH
Confidence 6899999 99999999987542 432 5799999876 1121 2344322 111 0000001124778
Q ss_pred HhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCEEEecCCCCC-CCCCCCCHHHHHhccc
Q 011618 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM-NGLFSCCVTTFFFYLM 464 (481)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~-~aE~~~t~eda~~wt~ 464 (481)
++++ .|++|=+.+.+ |- .=+++.+.+.+ ++...||+-.|||.. ++. +..+-+++++.
T Consensus 64 ~~~d--aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~-~~p~~iiivvsNPvDv~~~--i~t~~~~~~sg 135 (312)
T TIGR01772 64 ALKG--ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAE-SCPKAMILVITNPVNSTVP--IAAEVLKKKGV 135 (312)
T ss_pred HcCC--CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHH-hCCCeEEEEecCchhhHHH--HHHHHHHHhcC
Confidence 8988 89888555543 31 11345556643 789999999999986 111 24556666553
No 142
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=86.65 E-value=0.65 Score=42.36 Aligned_cols=32 Identities=28% Similarity=0.607 Sum_probs=25.9
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
+|||+|+|.||+..|..+... | .++.++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-----~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-----G-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-----C-------CeEEEEeccc
Confidence 699999999999999998832 3 4788887643
No 143
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=86.60 E-value=0.62 Score=41.56 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=28.0
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
||+++|+|..|..+|+.|+.+++ ++|.++|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----------~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----------GKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----------CEEEEEcCC
Confidence 68999999999999999987644 689999986
No 144
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=86.57 E-value=4.3 Score=36.00 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=39.8
Q ss_pred eEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
||+++|+ |-.|..|++.+.+. .|+ +=...+|++.=-..+. ++. .++...+ .+.+-..+|+++
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~-d~g----~~~~~~~--~~~~v~~~l~~~ 64 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK-DVG----ELAGIGP--LGVPVTDDLEEL 64 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS-BCH----HHCTSST---SSBEBS-HHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc-hhh----hhhCcCC--cccccchhHHHh
Confidence 8999999 99999999988762 343 2366677765000010 111 1111000 011123567777
Q ss_pred hcccCCcEEEeecC
Q 011618 404 VRKVKPHVLLGLSG 417 (481)
Q Consensus 404 V~~vkptvLIG~S~ 417 (481)
++. +||+|=+|.
T Consensus 65 ~~~--~DVvIDfT~ 76 (124)
T PF01113_consen 65 LEE--ADVVIDFTN 76 (124)
T ss_dssp TTH---SEEEEES-
T ss_pred ccc--CCEEEEcCC
Confidence 777 777777663
No 145
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.56 E-value=0.6 Score=46.30 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=30.8
Q ss_pred CCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
|++.+|+|+|+|..|.-+|+.|+.+++ .+|.++|.+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GV-----------g~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGV-----------GKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCC-----------CEEEEECCC
Confidence 344999999999999999999986644 689999987
No 146
>PRK06153 hypothetical protein; Provisional
Probab=86.53 E-value=0.73 Score=49.38 Aligned_cols=38 Identities=26% Similarity=0.544 Sum_probs=32.6
Q ss_pred CCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+|++ .||+|+|+|..|.-|+++|+.+.+ ++|.++|.+
T Consensus 172 ~kL~~---~~VaIVG~GG~GS~Va~~LAR~GV-----------geI~LVD~D 209 (393)
T PRK06153 172 AKLEG---QRIAIIGLGGTGSYILDLVAKTPV-----------REIHLFDGD 209 (393)
T ss_pred HHHhh---CcEEEEcCCccHHHHHHHHHHcCC-----------CEEEEECCC
Confidence 45556 999999999999999999987644 689999987
No 147
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.50 E-value=2.1 Score=44.07 Aligned_cols=131 Identities=16% Similarity=0.204 Sum_probs=85.4
Q ss_pred HHHHHHHHHhC--Cc---eEEEeecCCCchHHHHHHHH---hhc--C------CccccCcchhHHHHHHHHHHHHHHhCC
Q 011618 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERY---RKR--F------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (481)
Q Consensus 253 defv~av~~~~--P~---~~IqfEDf~~~naf~iL~ry---r~~--~------~~FNDDiQGTaaV~LAgll~Alr~~g~ 316 (481)
+||++.++++- |+ .++|+==.+.-+..++++.. +|- + ..|.++..+=.-+|-+|++.=++-.+-
T Consensus 74 ~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~avi~lL~~y~i 153 (282)
T PRK14166 74 NELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEI 153 (282)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCcCCCHHHHHHHHHHhCC
Confidence 56777777664 54 26665322223333343332 221 1 123232234456677888888888898
Q ss_pred CCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcC
Q 011618 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (481)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (481)
+++. ++++|+|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 154 ~l~G---k~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~---------------------------- 190 (282)
T PRK14166 154 DLEG---KDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK---------------------------- 190 (282)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC----------------------------
Confidence 8877 999999986 578888888754 23 245556553
Q ss_pred CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.++. +|++|-..+.|+.||+++|+.
T Consensus 191 -T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 221 (282)
T PRK14166 191 -TKDLSLYTRQ--ADLIIVAAGCVNLLRSDMVKE 221 (282)
T ss_pred -CCCHHHHHhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1248888888 999999999999999998873
No 148
>PRK07574 formate dehydrogenase; Provisional
Probab=86.43 E-value=3.6 Score=43.86 Aligned_cols=152 Identities=18% Similarity=0.183 Sum_probs=86.8
Q ss_pred hCCce-EEEeecCCCchHHHHHHHHhhcCCccccCc---chhHHHHHHHHHHHHHHh---------C--------CCCCC
Q 011618 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G--------LSLTD 320 (481)
Q Consensus 262 ~~P~~-~IqfEDf~~~naf~iL~ryr~~~~~FNDDi---QGTaaV~LAgll~Alr~~---------g--------~~l~d 320 (481)
..|+. .|+.-=.+..| ..+-.--+..+.+.|-.- +..|=-+++-+|+.+|-. | ..-.+
T Consensus 111 ~~p~LK~I~~~g~G~D~-id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~ 189 (385)
T PRK07574 111 KAPNLKLAITAGIGSDH-VDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYD 189 (385)
T ss_pred hCCCCcEEEECCccccc-ccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccccee
Confidence 34555 55554444433 111111123366666432 233444677788776622 1 01235
Q ss_pred CCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCH
Q 011618 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (481)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L 400 (481)
|.+++|.|+|.|..|..||+.+... |+ +++.+|+... .. +..+.+ . .....+|
T Consensus 190 L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~---~~----~~~~~~----g----~~~~~~l 242 (385)
T PRK07574 190 LEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRL---PE----EVEQEL----G----LTYHVSF 242 (385)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCC---ch----hhHhhc----C----ceecCCH
Confidence 6669999999999999999998764 33 5888887431 00 000001 0 0113468
Q ss_pred HHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCEEEecCCCC
Q 011618 401 LEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (481)
Q Consensus 401 ~e~V~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt 447 (481)
+|+++. .|+++=.-- .-++|+++.+..|. +..++.=.|.=.
T Consensus 243 ~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aRG~ 287 (385)
T PRK07574 243 DSLVSV--CDVVTIHCPLHPETEHLFDADVLSRMK----RGSYLVNTARGK 287 (385)
T ss_pred HHHhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC----CCcEEEECCCCc
Confidence 898887 788863321 12788999999993 466777655433
No 149
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=86.42 E-value=0.53 Score=49.63 Aligned_cols=108 Identities=18% Similarity=0.287 Sum_probs=65.2
Q ss_pred CCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC--CC------CCChhhhcccc-
Q 011618 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK- 386 (481)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~--r~------~l~~~k~~fA~- 386 (481)
++|.+ .||+|+|+|..|..+|..|+.+++ ++|.++|.+=+=..+ |. ++-..|..-+.
T Consensus 37 ~~l~~---~~VliiG~GglG~~v~~~La~~Gv-----------g~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~ 102 (370)
T PRK05600 37 ERLHN---ARVLVIGAGGLGCPAMQSLASAGV-----------GTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAE 102 (370)
T ss_pred HHhcC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEeCCEEccccccccccCChhHCCCHHHHHHHH
Confidence 45556 999999999999999999987644 689999997331111 11 12122222211
Q ss_pred ---ccCC---cCCcC---CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEe
Q 011618 387 ---DPGD---FMGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 442 (481)
Q Consensus 387 ---~~~~---~~~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFa 442 (481)
..++ +.... ...++.+.+++ .|++|.++- ..=++-+|..++. ....|.|++
T Consensus 103 ~l~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~D--n~~~r~~in~~~~-~~~iP~v~~ 162 (370)
T PRK05600 103 RLKEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSD--SFATKFLVADAAE-ITGTPLVWG 162 (370)
T ss_pred HHHHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCC--CHHHHHHHHHHHH-HcCCCEEEE
Confidence 1111 11001 11346677777 899998774 3335667777765 456888865
No 150
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=86.42 E-value=0.55 Score=53.24 Aligned_cols=39 Identities=18% Similarity=0.428 Sum_probs=33.3
Q ss_pred CCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce
Q 011618 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (481)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 369 (481)
-|++.||+|+|||.-|..+|+.|+.+++ ++|.++|.+-+
T Consensus 335 kL~~~kVLIvGaGGLGs~VA~~La~~GV-----------g~ItlVD~D~V 373 (664)
T TIGR01381 335 RYSQLKVLLLGAGTLGCNVARCLIGWGV-----------RHITFVDNGKV 373 (664)
T ss_pred HHhcCeEEEECCcHHHHHHHHHHHHcCC-----------CeEEEEcCCEE
Confidence 3445999999999999999999998766 69999998644
No 151
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=86.39 E-value=1.9 Score=45.03 Aligned_cols=117 Identities=19% Similarity=0.298 Sum_probs=71.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-ceeecCCCCCChhhhccccccCCcCCcCCCCCHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (481)
.||.|+|||..|...|-.|+. .++. +.+.|+|.. +......-+|.+.....-.+.. . ....+ .+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~-i---~~~~~-y~ 65 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALDLSHAAAPLGSDVK-I---TGDGD-YE 65 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcchhhcchhccCceE-E---ecCCC-hh
Confidence 389999999999999988843 3443 379999987 1111111234433222211111 0 01123 45
Q ss_pred HhcccCCcEEEeecC---CCC-----------CCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcc
Q 011618 403 VVRKVKPHVLLGLSG---VGG-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYL 463 (481)
Q Consensus 403 ~V~~vkptvLIG~S~---~~g-----------~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt 463 (481)
.+++ .|+.|=+.+ .|| ..-+++.+++++ ++...||+-.|||.. ...--+++.+
T Consensus 66 ~~~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~-~~~d~ivlVvtNPvD-----~~ty~~~k~s 132 (313)
T COG0039 66 DLKG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAK-YAPDAIVLVVTNPVD-----ILTYIAMKFS 132 (313)
T ss_pred hhcC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHh-hCCCeEEEEecCcHH-----HHHHHHHHhc
Confidence 5777 788874443 455 134567778864 889999999999987 5555555555
No 152
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.35 E-value=1.5 Score=43.32 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=55.2
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcC-CcCCCCCHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFM-GLREGASLLEV 403 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~-~~~~~~~L~e~ 403 (481)
||.|+|+|+.|..+|..|..+ | .+++++|+++=-.. .+......+ . ..+.. ......++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~---~~~~~g~~~-~-~~~~~~~~~~~~~~~~~ 64 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLD---ALNENGLRL-E-DGEITVPVLAADDPAEL 64 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHH---HHHHcCCcc-c-CCceeecccCCCChhHc
Confidence 799999999999999888653 4 36888887421100 010000000 0 00000 00012335543
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 404 V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
+ ++|++| ++. +.--++++++.++....+.-+|+.+.|...
T Consensus 65 -~--~~d~vi-la~-k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 65 -G--PQDLVI-LAV-KAYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred -C--CCCEEE-Eec-ccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 4 378777 443 233468888888653444446666888754
No 153
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.27 E-value=2.2 Score=44.12 Aligned_cols=84 Identities=14% Similarity=0.184 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-.|++.=++..+.+++. +++||+|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 140 ~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~----------- 193 (294)
T PRK14187 140 IPCTPKGCLYLIKTITRNLSG---SDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA----------- 193 (294)
T ss_pred cCcCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC-----------
Confidence 456778888889999988877 999999985 578888888764 23 246666653
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.+++ +|++|-..+.|+.++.++|+.
T Consensus 194 ------------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik~ 224 (294)
T PRK14187 194 ------------------TRDLADYCSK--ADILVAAVGIPNFVKYSWIKK 224 (294)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1247888888 999999999999999999883
No 154
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=86.23 E-value=0.58 Score=44.96 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=32.6
Q ss_pred CCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
++|++ .||+|+|+|.-|.-+|+.|+.+++ ++|.++|.+-
T Consensus 17 ~~L~~---s~VlIiG~gglG~evak~La~~GV-----------g~i~lvD~d~ 55 (197)
T cd01492 17 KRLRS---ARILLIGLKGLGAEIAKNLVLSGI-----------GSLTILDDRT 55 (197)
T ss_pred HHHHh---CcEEEEcCCHHHHHHHHHHHHcCC-----------CEEEEEECCc
Confidence 34555 999999999999999999987654 6899999873
No 155
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=86.16 E-value=1.3 Score=48.00 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=60.4
Q ss_pred HHHHHHHHhCCceEEEeecCCCchHHHHHHHHhhc-CC--ccccCcchhHHHHHHHHHHHHHHh--------CCCCCCCC
Q 011618 254 EFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKR-FC--MFNDDIQGTAGVALAGLLGTVRAQ--------GLSLTDFA 322 (481)
Q Consensus 254 efv~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~-~~--~FNDDiQGTaaV~LAgll~Alr~~--------g~~l~dl~ 322 (481)
+..+-+....|+.-..+ +....-.++.++|.-. +| .+|++..+.|....+-+++.++.. ...-.+
T Consensus 137 ~~~~~~a~~~p~i~~~~--id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~-- 212 (515)
T TIGR03140 137 QALNQMALLNPNISHTM--IDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDP-- 212 (515)
T ss_pred HHHHHHHHhCCCceEEE--EEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCC--
Confidence 34455555667654444 5556777888999765 44 358888888888888888877644 111234
Q ss_pred CceEEEeCccHHHHHHHHHHHH
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~ 344 (481)
.+++|+|||+||+..|..+..
T Consensus 213 -~dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 213 -YDVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred -CCEEEECCCHHHHHHHHHHHH
Confidence 789999999999999987654
No 156
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.13 E-value=0.7 Score=43.50 Aligned_cols=101 Identities=15% Similarity=0.238 Sum_probs=57.5
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC---C-----CCChhhhcccc----ccCCc-
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER---K-----NLDPAAAPFAK----DPGDF- 391 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r---~-----~l~~~k~~fA~----~~~~~- 391 (481)
||+++|+|..|..||+.|+.+ |+ ++|.++|.+= +...+ . ++...|..-+. ..+++
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~-v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v 68 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFDV-VEPSNLNRQQYFLSQIGEPKVEALKENLREINPFV 68 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-EcCcchhcccccHhhCCChHHHHHHHHHHHHCCCC
Confidence 689999999999999999865 43 6899999973 22211 1 11112211111 11110
Q ss_pred C--C---cCCCCCHHHHhcccCCcEEEeecCCCCCCCHH-HHHHhhhcCCCCCEEEe
Q 011618 392 M--G---LREGASLLEVVRKVKPHVLLGLSGVGGVFNEE-VLKAMRESDSVKPAIFA 442 (481)
Q Consensus 392 ~--~---~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~e-vv~~Ma~~~~erPIIFa 442 (481)
+ . .....++.+.++. .|++|.++. ..-++. +.+.+.+ ....|+|++
T Consensus 69 ~i~~~~~~~~~~~~~~~l~~--~DlVi~~~d--~~~~r~~i~~~~~~-~~~ip~i~~ 120 (174)
T cd01487 69 KIEAINIKIDENNLEGLFGD--CDIVVEAFD--NAETKAMLAESLLG-NKNKPVVCA 120 (174)
T ss_pred EEEEEEeecChhhHHHHhcC--CCEEEECCC--CHHHHHHHHHHHHH-HCCCCEEEE
Confidence 0 0 0012346677776 899998743 223333 4555543 446899986
No 157
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=86.07 E-value=4.6 Score=42.60 Aligned_cols=130 Identities=12% Similarity=0.123 Sum_probs=72.4
Q ss_pred ccccccCChhhHHHHHhcCCCCCeeEE-EEecCceeeccCCCCCccccccchhhhhh-----hhhcCCCCCc-eecEEee
Q 011618 149 GMYFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLDVY-----VAAAGINPQR-ILPVMLD 221 (481)
Q Consensus 149 Glyis~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~iGKl~LY-----~a~gGI~P~~-~LPV~LD 221 (481)
|. ++..|-.++.++|+.. +++++ +++|+ .+--+-..|.+.+-+..+....+ ..=-||..-. .+|+
T Consensus 162 G~-~~~~d~~el~~lL~~~---Gi~v~~~~~d~-~~~~~~~~~~a~~~~~~~~~~~~~A~~Le~r~giP~~~~~~P~--- 233 (396)
T cd01979 162 GS-LPDIVEDQLRRELEQL---GIPVVGFLPPR-RYTDLPVIGPGTYVLGIQPFLSRTATTLMRRRKCKLLSAPFPI--- 233 (396)
T ss_pred Ee-CCcchHHHHHHHHHHc---CCeEEEEeCCC-ChHHhhccCcceEEEEeChhHHHHHHHHHHhcCCCcccCCcCc---
Confidence 54 3556667788888865 67776 77874 45555555555444433322222 1223554222 1222
Q ss_pred ccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEEEeecCCCchHHHHHHHHhhcCCccccCcchhHH
Q 011618 222 VGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAG 301 (481)
Q Consensus 222 vGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaa 301 (481)
|- +-.++|++.+.+.+-. .-+.+++.+.+
T Consensus 234 -G~-------------------------~~t~~~l~~la~~~g~------------~~~~i~~e~~~------------- 262 (396)
T cd01979 234 -GP-------------------------DGTRAWLEAICSAFGI------------FPSVLAEREAR------------- 262 (396)
T ss_pred -Ch-------------------------HHHHHHHHHHHHHhCC------------ChhHHHHHHHH-------------
Confidence 21 1368888888877631 01123333321
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHH
Q 011618 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 302 V~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
+.-++......|.. .|++|+|-+.-..++++.|.+.
T Consensus 263 -----~~~~l~~~~~~l~G---krv~i~g~~~~~~~la~~L~el 298 (396)
T cd01979 263 -----AWRALEPYLDLLRG---KSIFFMGDNLLEIPLARFLTRC 298 (396)
T ss_pred -----HHHHHHHHHHhhcC---CEEEEECCchHHHHHHHHHHHC
Confidence 33444444445555 8999999998889999888763
No 158
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=86.06 E-value=3 Score=42.26 Aligned_cols=104 Identities=15% Similarity=0.184 Sum_probs=57.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccC-C--cC-C-cCCCC
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPG-D--FM-G-LREGA 398 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~-~--~~-~-~~~~~ 398 (481)
.||.|+|+|..|..+|..+..+ | .+++++|+..-.. .+......+-.... + +. . .....
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 66 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGD----ELRAHGLTLTDYRGRDVRVPPSAIAFST 66 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHH----HHHhcCceeecCCCcceecccceeEecc
Confidence 5899999999999999998764 4 2688888742110 00000000000000 0 00 0 00112
Q ss_pred CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
++ ++++. +|++|=+.. .-..+++++.+.....+..+|..+.|...
T Consensus 67 ~~-~~~~~--~D~vil~vk--~~~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 67 DP-AALAT--ADLVLVTVK--SAATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred Ch-hhccC--CCEEEEEec--CcchHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 34 45554 788874432 22357888888654456678888888765
No 159
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=85.98 E-value=7.8 Score=40.01 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=29.5
Q ss_pred CCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 319 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 319 ~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+|+++++.|+|.|..|..||+.+... |+ +++.+|+.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~~~~ 168 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCWSRS 168 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 345669999999999999999999865 33 57777763
No 160
>PRK13243 glyoxylate reductase; Reviewed
Probab=85.91 E-value=7.1 Score=40.52 Aligned_cols=147 Identities=22% Similarity=0.207 Sum_probs=80.7
Q ss_pred CCce-EEEeecCCCchHHHHHHHHhhcCCccccCc---chhHHHHHHHHHHHHHHh---------CC-------------
Q 011618 263 WPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL------------- 316 (481)
Q Consensus 263 ~P~~-~IqfEDf~~~naf~iL~ryr~~~~~FNDDi---QGTaaV~LAgll~Alr~~---------g~------------- 316 (481)
.|+. .|+.-=.+..| ..+-.--+..+++.|--- +..|=-+++.+++..|-. |.
T Consensus 65 ~p~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~ 143 (333)
T PRK13243 65 APRLRIVANYAVGYDN-IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMF 143 (333)
T ss_pred CCCCeEEEecCccccc-cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccc
Confidence 3554 55554444444 222111123466665321 234555677777776642 11
Q ss_pred CCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCC
Q 011618 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (481)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (481)
.-.+|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. .. .. ...+. ..
T Consensus 144 ~g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~-----~~-~~--~~~~~---------~~ 194 (333)
T PRK13243 144 LGYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR-----KP-EA--EKELG---------AE 194 (333)
T ss_pred cccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC-----Ch-hh--HHHcC---------CE
Confidence 01356679999999999999999998754 43 577788742 11 00 00110 01
Q ss_pred CCCHHHHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCEEEecCC
Q 011618 397 GASLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (481)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~~erPIIFaLSN 445 (481)
..+|.|+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|.
T Consensus 195 ~~~l~ell~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk----~ga~lIN~aR 241 (333)
T PRK13243 195 YRPLEELLRE--SDFVSLHVPLTKETYHMINEERLKLMK----PTAILVNTAR 241 (333)
T ss_pred ecCHHHHHhh--CCEEEEeCCCChHHhhccCHHHHhcCC----CCeEEEECcC
Confidence 2357777776 677663321 12667777777773 4556665553
No 161
>PRK07680 late competence protein ComER; Validated
Probab=85.72 E-value=2.3 Score=42.21 Aligned_cols=98 Identities=9% Similarity=0.196 Sum_probs=54.5
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcC-CChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~G-ls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
+|.|+|+|..|..+|..|... | +. ...++++|++- . ... .++...... ....+..|+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~v~v~~r~~----~--~~~----~~~~~~~g~---~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAVK----PSQLTITNRTP----A--KAY----HIKERYPGI---HVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCCC----cceEEEECCCH----H--HHH----HHHHHcCCe---EEECCHHHH
Confidence 699999999999999888653 3 11 13577777631 0 111 111110000 112356666
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 404 V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
++. +|++| ++. +....+++++.++....+..+|..++|+.+
T Consensus 60 ~~~--aDiVi-lav-~p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 60 ISQ--SDLIF-ICV-KPLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred HHh--CCEEE-Eec-CHHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 665 67665 222 333356777776532334567777887664
No 162
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=85.59 E-value=6 Score=41.22 Aligned_cols=52 Identities=29% Similarity=0.353 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHH------------------HhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeE
Q 011618 300 AGVALAGLLGTVR------------------AQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (481)
Q Consensus 300 aaV~LAgll~Alr------------------~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i 361 (481)
|=-++|.+++..| ..|. +|.++++-|+|.|..|..+|+.+....+ ++
T Consensus 104 AE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~---el~gkTvGIiG~G~IG~~va~~l~afgm------------~v 168 (324)
T COG0111 104 AELVLALLLALARRIPDADASQRRGEWDRKAFRGT---ELAGKTVGIIGLGRIGRAVAKRLKAFGM------------KV 168 (324)
T ss_pred HHHHHHHHHHHhcCchhhHHHHHcCCccccccccc---cccCCEEEEECCCHHHHHHHHHHHhCCC------------eE
Confidence 3345777777777 2344 4445999999999999999999887644 68
Q ss_pred EEEec
Q 011618 362 FLLDK 366 (481)
Q Consensus 362 ~lvD~ 366 (481)
..+|.
T Consensus 169 ~~~d~ 173 (324)
T COG0111 169 IGYDP 173 (324)
T ss_pred EEECC
Confidence 88887
No 163
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.52 E-value=1.8 Score=44.61 Aligned_cols=115 Identities=18% Similarity=0.275 Sum_probs=71.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChhhhccccccCCcCCcCCCCCHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (481)
.||.|+|||..|..+|..|+. .|+- ..|.|+|.+-=...+- .+|.+.. +|.... .. ....+.++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~~-----~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~-~v---~~~~dy~~ 68 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGLA-----DELVLVDVVEDKLKGEAMDLQHGS-AFLKNP-KI---EADKDYSV 68 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHHHHHHHhh-ccCCCC-EE---EECCCHHH
Confidence 599999999999999987753 3442 5799999742111111 1333332 232211 11 11245655
Q ss_pred HhcccCCcEEEeecCC---CCCCCH------------HHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcc
Q 011618 403 VVRKVKPHVLLGLSGV---GGVFNE------------EVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYL 463 (481)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~Ft~------------evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt 463 (481)
+++ +|++|=+.+. || -|+ ++++.|.+ ++...+|+-.|||.. ....-+++++
T Consensus 69 -~~~--adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~~-~~p~~~vivvsNP~d-----~~t~~~~k~s 134 (312)
T cd05293 69 -TAN--SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLVK-YSPNAILLVVSNPVD-----IMTYVAWKLS 134 (312)
T ss_pred -hCC--CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEccChHH-----HHHHHHHHHh
Confidence 777 8998754443 33 343 56667754 899999999999997 5666777765
No 164
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.48 E-value=1.6 Score=46.24 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.||.|+|||+-|+++|..+...
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc
Confidence 7999999999999999998764
No 165
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=85.13 E-value=1.1 Score=45.37 Aligned_cols=114 Identities=16% Similarity=0.237 Sum_probs=65.2
Q ss_pred EEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCC-CCChhhhccccccCCcCCcCCCCCHHHHh
Q 011618 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (481)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~-~l~~~k~~fA~~~~~~~~~~~~~~L~e~V 404 (481)
|.|+|||..|.++|..+.. .|+- .++++|.+==..+... ++.+.. .+...... .....+. +++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l~------eV~L~Di~e~~~~g~~~dl~~~~-~~~~~~~~---I~~t~d~-~~l 64 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KELG------DVVLLDIVEGLPQGKALDISQAA-PILGSDTK---VTGTNDY-EDI 64 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCCc------EEEEEeCCCcHHHHHHHHHHHhh-hhcCCCeE---EEEcCCH-HHh
Confidence 5799999999999887754 2431 6999998610000000 111110 00000000 0112444 457
Q ss_pred cccCCcEEEeecCCCCC--------------CCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcc
Q 011618 405 RKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYL 463 (481)
Q Consensus 405 ~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt 463 (481)
+. +|++|=+.+.|.. +-+++++.|.+ ++...+|+-.|||.. .....+++++
T Consensus 65 ~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~-~~p~~~iIv~sNP~d-----i~t~~~~~~s 129 (300)
T cd01339 65 AG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKK-YAPNAIVIVVTNPLD-----VMTYVAYKAS 129 (300)
T ss_pred CC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH-----HHHHHHHHHh
Confidence 77 8988843333321 23477888854 888889889999997 5555666666
No 166
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.05 E-value=2.7 Score=40.50 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=19.4
Q ss_pred CceEEEeCccHHHHHHHHHHHH
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~ 344 (481)
+.||.|+|+|..|..+|..+..
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~ 25 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLK 25 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHh
Confidence 3799999999999999988764
No 167
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.94 E-value=2.7 Score=43.22 Aligned_cols=85 Identities=14% Similarity=0.293 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCC
Q 011618 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (481)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 377 (481)
=.-+|-.|++.=++-.+.+++. ++++|+|.+ ..|.-+|.||.. .|. .+.++.|+
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~---------- 189 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAG---KRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK---------- 189 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC----------
Confidence 3456777888888888988877 999999985 578888888764 232 35555432
Q ss_pred ChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.+++ +|++|-..+.|+.|+.|+|+.
T Consensus 190 -------------------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk~ 220 (282)
T PRK14169 190 -------------------TRNLKQLTKE--ADILVVAVGVPHFIGADAVKP 220 (282)
T ss_pred -------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1348888888 999999999999999998873
No 168
>PRK06932 glycerate dehydrogenase; Provisional
Probab=84.94 E-value=6.3 Score=40.63 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=58.6
Q ss_pred CCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCC
Q 011618 319 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGA 398 (481)
Q Consensus 319 ~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~ 398 (481)
.+|.++++.|+|-|..|..+|+++... |+ +++.+|+..- ... . ....
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~f-----g~-------~V~~~~~~~~-----~~~------~----------~~~~ 189 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQAL-----GM-------KVLYAEHKGA-----SVC------R----------EGYT 189 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCcc-----ccc------c----------cccC
Confidence 467779999999999999999988654 33 5666665310 000 0 0123
Q ss_pred CHHHHhcccCCcEEEeec----CCCCCCCHHHHHHhhhcCCCCCEEEecCCC
Q 011618 399 SLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (481)
Q Consensus 399 ~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~~erPIIFaLSNP 446 (481)
+|.|+++. .|+++=.- ..-|.|+++.+..|. +..++.=.|.-
T Consensus 190 ~l~ell~~--sDiv~l~~Plt~~T~~li~~~~l~~mk----~ga~lIN~aRG 235 (314)
T PRK06932 190 PFEEVLKQ--ADIVTLHCPLTETTQNLINAETLALMK----PTAFLINTGRG 235 (314)
T ss_pred CHHHHHHh--CCEEEEcCCCChHHhcccCHHHHHhCC----CCeEEEECCCc
Confidence 68888888 78887321 113888999998883 56666655543
No 169
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.90 E-value=2.7 Score=43.41 Aligned_cols=131 Identities=13% Similarity=0.165 Sum_probs=85.3
Q ss_pred HHHHHHHHHhC--Cc---eEEEeecCCCchHHHHHHHHhh--cC---------CccccCcchhHHHHHHHHHHHHHHhCC
Q 011618 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYRK--RF---------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (481)
Q Consensus 253 defv~av~~~~--P~---~~IqfEDf~~~naf~iL~ryr~--~~---------~~FNDDiQGTaaV~LAgll~Alr~~g~ 316 (481)
+|+++.+.++- |+ .++|+==.+.-+..++++.-.- .+ ..|..+-.+=.-+|-+|++.=++..+-
T Consensus 76 ~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~av~~lL~~y~i 155 (288)
T PRK14171 76 NDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGISQGFIPCTALGCLAVIKKYEP 155 (288)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCCCCCCcCCCHHHHHHHHHHhCC
Confidence 56777777664 53 3666532222233334433221 12 122222233456677888888899998
Q ss_pred CCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcC
Q 011618 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (481)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (481)
+++. .++||+|.+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 156 ~l~G---K~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~---------------------------- 192 (288)
T PRK14171 156 NLTG---KNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK---------------------------- 192 (288)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC----------------------------
Confidence 8777 999999985 578888888754 232 45666542
Q ss_pred CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.+++ +|++|-..+.|+.+++++|+.
T Consensus 193 -T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk~ 223 (288)
T PRK14171 193 -THNLSSITSK--ADIVVAAIGSPLKLTAEYFNP 223 (288)
T ss_pred -CCCHHHHHhh--CCEEEEccCCCCccCHHHcCC
Confidence 1248888888 999999999999999999884
No 170
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.83 E-value=2.7 Score=43.30 Aligned_cols=86 Identities=16% Similarity=0.324 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-.|++.-++-.+-+++. ++++|+|.+ ..|.-+|.||..-. .| ..+.+|.++
T Consensus 138 ~PcTp~av~~ll~~~~i~l~G---k~vvViGrS~~VGkPla~lL~~~~---~~-------atVtvchs~----------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAG---AHVVVIGRGVTVGRPIGLLLTRRS---EN-------ATVTLCHTG----------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHhhcc---CC-------CEEEEeCCC-----------
Confidence 456778888888888988777 999999985 67888888875410 22 235556542
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.+++ +|++|-..+.|+.++.|+|+.
T Consensus 194 ------------------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik~ 224 (284)
T PRK14193 194 ------------------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVKP 224 (284)
T ss_pred ------------------CCCHHHHHHh--CCEEEEecCCcCccCHHHcCC
Confidence 1348888988 999999999999999999883
No 171
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=84.78 E-value=2.7 Score=43.57 Aligned_cols=85 Identities=19% Similarity=0.303 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCC
Q 011618 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (481)
Q Consensus 299 TaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l 377 (481)
=.-+|-+|++.=++-.+-+++. +++||+|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 146 ~~PcTp~avi~lL~~~~i~l~G---k~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~---------- 200 (299)
T PLN02516 146 FLPCTPKGCLELLSRSGIPIKG---KKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR---------- 200 (299)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC----------
Confidence 3456777788888888887777 999999985 568888887754 23 257777653
Q ss_pred ChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.+++ +|++|-..+.|+.++.|+|+.
T Consensus 201 -------------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk~ 231 (299)
T PLN02516 201 -------------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIKP 231 (299)
T ss_pred -------------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1348888988 999999999999999999984
No 172
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=84.70 E-value=1 Score=48.83 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=65.2
Q ss_pred HHHHHhCCceEEEeecCCCchHHHHHHHHhhc-CC--ccccCcchhHHHHHHHHHHHHHHhCC--------CCCCCCCce
Q 011618 257 EAVHARWPKAIVQFEDFQMKWAFETLERYRKR-FC--MFNDDIQGTAGVALAGLLGTVRAQGL--------SLTDFADQK 325 (481)
Q Consensus 257 ~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~-~~--~FNDDiQGTaaV~LAgll~Alr~~g~--------~l~dl~~~r 325 (481)
+.+....|+ |.+|=+....-.++.++|.-. +| ++||+....|....+-++.+++.... ...+ ..
T Consensus 139 ~~~a~~~~~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d 213 (517)
T PRK15317 139 NLMAVLNPN--ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDP---YD 213 (517)
T ss_pred HHHHHhCCC--ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCC---CC
Confidence 444445575 445555556677888998755 34 35888888888988899988875321 1234 68
Q ss_pred EEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+||+|||.||+..|..+.. .|+ ++.++|.+
T Consensus 214 vvIIGgGpaGl~aA~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 214 VLVVGGGPAGAAAAIYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred EEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 9999999999999988854 464 56666654
No 173
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.70 E-value=2.7 Score=43.54 Aligned_cols=98 Identities=17% Similarity=0.293 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCC
Q 011618 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (481)
Q Consensus 298 GTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 376 (481)
+-.-+|-+|++.=++-.|.+++. ++++|+|.+ ..|.-+|.||.. .|+.. ...+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~~~~---~atVtv~hs~--------- 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSG---AEVVVVGRSNIVGKPIANMMTQ-----KGPGA---NATVTIVHTR--------- 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcccHHHHHHHHh-----cccCC---CCEEEEecCC---------
Confidence 34456777888888888998877 999999985 578888887764 22110 0245555443
Q ss_pred CChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 377 l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
..+|.+.+++ +|++|-+.+.|+.++.++|+. ..||+=-.
T Consensus 199 --------------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik~-------gavVIDvG 237 (297)
T PRK14168 199 --------------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIKP-------GATVIDVG 237 (297)
T ss_pred --------------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcCC-------CCEEEecC
Confidence 1348888988 999999999999999999883 44665443
No 174
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=84.67 E-value=0.87 Score=47.62 Aligned_cols=109 Identities=21% Similarity=0.207 Sum_probs=64.4
Q ss_pred CCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC---CC------CCChhhhcccc
Q 011618 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE---RK------NLDPAAAPFAK 386 (481)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~---r~------~l~~~k~~fA~ 386 (481)
++|++ .||+|+|+|..|.-+|..|+.+++ ++|.++|.+= |... |. ++-..|..-|.
T Consensus 24 ~~L~~---~~VlivG~GGlGs~~a~~La~~Gv-----------g~i~lvD~D~-ve~sNL~Rq~l~~~~diG~~Ka~~a~ 88 (355)
T PRK05597 24 QSLFD---AKVAVIGAGGLGSPALLYLAGAGV-----------GHITIIDDDT-VDLSNLHRQVIHSTAGVGQPKAESAR 88 (355)
T ss_pred HHHhC---CeEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCCE-EcccccccCcccChhHCCChHHHHHH
Confidence 34555 999999999999999999876644 6899999973 2221 11 11112222111
Q ss_pred ----ccCCc-C--CcC---CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 387 ----DPGDF-M--GLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 387 ----~~~~~-~--~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
..++. . ... ...+..+.++. .|++|-++- ..=++.++..++. ....|.|++-+
T Consensus 89 ~~l~~~np~v~v~~~~~~i~~~~~~~~~~~--~DvVvd~~d--~~~~r~~~n~~c~-~~~ip~v~~~~ 151 (355)
T PRK05597 89 EAMLALNPDVKVTVSVRRLTWSNALDELRD--ADVILDGSD--NFDTRHLASWAAA-RLGIPHVWASI 151 (355)
T ss_pred HHHHHHCCCcEEEEEEeecCHHHHHHHHhC--CCEEEECCC--CHHHHHHHHHHHH-HcCCCEEEEEE
Confidence 11110 0 000 11234566766 799987763 3345566777765 55699988643
No 175
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=84.52 E-value=1.7 Score=43.25 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
.|++.+++..+...+. .+++|+|+|.+|.+++..+.+ .| .+++++|+
T Consensus 102 ~G~~~~l~~~~~~~~~---k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R 148 (270)
T TIGR00507 102 IGLVSDLERLIPLRPN---QRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANR 148 (270)
T ss_pred HHHHHHHHhcCCCccC---CEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeC
Confidence 3466666653444445 899999999888888777654 23 26888886
No 176
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=84.38 E-value=4.5 Score=42.01 Aligned_cols=130 Identities=17% Similarity=0.178 Sum_probs=78.1
Q ss_pred eEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccee--ecC-CCCCChhhhccccccCCcCCcCCCCCH
Q 011618 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKE-RKNLDPAAAPFAKDPGDFMGLREGASL 400 (481)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~-r~~l~~~k~~fA~~~~~~~~~~~~~~L 400 (481)
||.|+|| |..|..+|..|+..-. .+...| -.+.|+|.+.-. ... .-+|.+...++... . ....+.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~--~~~~~e---~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~-~-----~~~~~~ 69 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRM--LGKDQP---IILHLLDIPPAMKVLEGVVMELMDCAFPLLDG-V-----VPTHDP 69 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccc--cCCCCc---cEEEEEecCCcccccceeEeehhcccchhcCc-e-----eccCCh
Confidence 6899999 9999999988765322 111110 168999974321 111 12344443233211 0 012246
Q ss_pred HHHhcccCCcEEEeecCCCCC--C------------CHHHHHHhhhcC-CCCCEEEecCCCCCCCCCCCCHHHHHhcccC
Q 011618 401 LEVVRKVKPHVLLGLSGVGGV--F------------NEEVLKAMRESD-SVKPAIFAMSNPTMNGLFSCCVTTFFFYLMA 465 (481)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~--F------------t~evv~~Ma~~~-~erPIIFaLSNPt~~aE~~~t~eda~~wt~g 465 (481)
.+++++ .|++|=+.+.|.. - =+++++.|++ + +...||+-.|||.. +..--+++++.+
T Consensus 70 ~~~~~~--aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~-~~~~~~iiivvsNPvD-----v~t~v~~~~sg~ 141 (324)
T TIGR01758 70 AVAFTD--VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDK-LAKKDCKVLVVGNPAN-----TNALVLSNYAPS 141 (324)
T ss_pred HHHhCC--CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHh-hCCCCeEEEEeCCcHH-----HHHHHHHHHcCC
Confidence 778888 8999856555421 1 2456777754 7 48899999999987 777788888854
Q ss_pred -CccccccC
Q 011618 466 -ARSSFLTS 473 (481)
Q Consensus 466 -~r~~f~~~ 473 (481)
.+..|-+|
T Consensus 142 ~~~~vig~g 150 (324)
T TIGR01758 142 IPPKNFSAL 150 (324)
T ss_pred CCcceEEEe
Confidence 22245444
No 177
>PRK06487 glycerate dehydrogenase; Provisional
Probab=84.10 E-value=8.8 Score=39.57 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=70.2
Q ss_pred cCCccccC---cchhHHHHHHHHHHHHHHh---------CC------------CCCCCCCceEEEeCccHHHHHHHHHHH
Q 011618 288 RFCMFNDD---IQGTAGVALAGLLGTVRAQ---------GL------------SLTDFADQKIVVVGAGSAGLGVLKMAV 343 (481)
Q Consensus 288 ~~~~FNDD---iQGTaaV~LAgll~Alr~~---------g~------------~l~dl~~~riv~~GAGsAg~GiA~ll~ 343 (481)
.+.+.|-- -+.+|=-+++.+++..|-. |+ ...+|.++++.|+|.|..|..||+++.
T Consensus 89 gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~ 168 (317)
T PRK06487 89 GITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAE 168 (317)
T ss_pred CCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHh
Confidence 35555532 1345666777787776632 11 113677799999999999999999986
Q ss_pred HHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeec----CCC
Q 011618 344 QAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVG 419 (481)
Q Consensus 344 ~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~ 419 (481)
.. |+ +|+.+|+.+- +. .+ ...+|.|+++. .|+++=.- ..-
T Consensus 169 ~f-----gm-------~V~~~~~~~~-----~~-------~~----------~~~~l~ell~~--sDiv~l~lPlt~~T~ 212 (317)
T PRK06487 169 AF-----GM-------RVLIGQLPGR-----PA-------RP----------DRLPLDELLPQ--VDALTLHCPLTEHTR 212 (317)
T ss_pred hC-----CC-------EEEEECCCCC-----cc-------cc----------cccCHHHHHHh--CCEEEECCCCChHHh
Confidence 54 33 5777776521 00 00 11357777766 67766221 113
Q ss_pred CCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 420 GVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 420 g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
|.|+++.+..|. +..++.=.|
T Consensus 213 ~li~~~~~~~mk----~ga~lIN~a 233 (317)
T PRK06487 213 HLIGARELALMK----PGALLINTA 233 (317)
T ss_pred cCcCHHHHhcCC----CCeEEEECC
Confidence 677777777772 455555444
No 178
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=83.87 E-value=1 Score=45.84 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=32.5
Q ss_pred CCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceee
Q 011618 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (481)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~ 371 (481)
|++.+|+|+|+|..|.-+|+.|+.+.+ ++|.++|.+=+-.
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GV-----------g~itLiD~D~V~~ 67 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGI-----------GAITLIDMDDVCV 67 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCC-----------CEEEEEeCCEecc
Confidence 444999999999999999999887644 6899999875443
No 179
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.84 E-value=4.2 Score=41.06 Aligned_cols=96 Identities=21% Similarity=0.213 Sum_probs=59.5
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHh
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V 404 (481)
||.|+|.|..|..+|+-+... |. +++++|++. + .. ..++.... ....+++|++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~--~~----~~~~~~g~-----~~~~s~~~~~ 54 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----E--AV----DVAGKLGI-----TARHSLEELV 54 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----H--HH----HHHHHCCC-----eecCCHHHHH
Confidence 699999999999999988653 42 577777631 1 11 11221110 1235688888
Q ss_pred cccC-CcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 405 RKVK-PHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 405 ~~vk-ptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
+..+ ++++|=+- ......++++..+.....+..+|.=+|+-.+
T Consensus 55 ~~~~~advVi~~v-p~~~~~~~v~~~i~~~l~~g~ivid~st~~~ 98 (299)
T PRK12490 55 SKLEAPRTIWVMV-PAGEVTESVIKDLYPLLSPGDIVVDGGNSRY 98 (299)
T ss_pred HhCCCCCEEEEEe-cCchHHHHHHHHHhccCCCCCEEEECCCCCc
Confidence 7653 56765332 2344677777766443456778888987666
No 180
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.78 E-value=3.4 Score=42.56 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-.|++.=++-.+-+++. ++++|+|-+ ..|.-+|.||.. .| ..+.+|.++
T Consensus 137 ~PcTp~avi~ll~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~----------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKG---KRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR----------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-----------
Confidence 456778888888888987777 999999986 578888877754 23 145555332
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.++. +|++|-..+.|+.+++++|+.
T Consensus 191 ------------------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik~ 221 (282)
T PRK14182 191 ------------------TADLAGEVGR--ADILVAAIGKAELVKGAWVKE 221 (282)
T ss_pred ------------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1348888888 999999999999999999884
No 181
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.72 E-value=3.3 Score=42.77 Aligned_cols=131 Identities=20% Similarity=0.235 Sum_probs=84.0
Q ss_pred HHHHHHHHHhC--Cc---eEEEeecCCCchHHHHHHHHh--hcCCccccCcc--------hhHHHHHHHHHHHHHHhCCC
Q 011618 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDDIQ--------GTAGVALAGLLGTVRAQGLS 317 (481)
Q Consensus 253 defv~av~~~~--P~---~~IqfEDf~~~naf~iL~ryr--~~~~~FNDDiQ--------GTaaV~LAgll~Alr~~g~~ 317 (481)
+||++.+.++- |+ .++|+==...-+..++++.-. +.+=.||..-. +=.-+|-.|++.=++..+-+
T Consensus 73 ~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~ 152 (287)
T PRK14173 73 EELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWMGGEALEPCTPAGVVRLLKHYGIP 152 (287)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhHHHhcCCCCCCCCCHHHHHHHHHHcCCC
Confidence 56777777664 43 366653222223344444332 11222222111 22355777888888888888
Q ss_pred CCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCC
Q 011618 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (481)
Q Consensus 318 l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~ 396 (481)
++. .+++|+|.+ ..|.-+|.||.. .| ..+.+|.|+
T Consensus 153 l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------aTVtichs~----------------------------- 188 (287)
T PRK14173 153 LAG---KEVVVVGRSNIVGKPLAALLLR-----ED-------ATVTLAHSK----------------------------- 188 (287)
T ss_pred CCC---CEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEeCCC-----------------------------
Confidence 777 999999985 678888888864 23 245555432
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.+++ +|++|-..+.|+.+++++|+.
T Consensus 189 T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 219 (287)
T PRK14173 189 TQDLPAVTRR--ADVLVVAVGRPHLITPEMVRP 219 (287)
T ss_pred CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1348888888 999999999999999999873
No 182
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.68 E-value=6.7 Score=43.25 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=55.0
Q ss_pred CCce-EEEeecCCCchHHHHHHHHhhcCCccccCc---chhHHHHHHHHHHHHHHh---------C---C-C--CCCCCC
Q 011618 263 WPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G---L-S--LTDFAD 323 (481)
Q Consensus 263 ~P~~-~IqfEDf~~~naf~iL~ryr~~~~~FNDDi---QGTaaV~LAgll~Alr~~---------g---~-~--l~dl~~ 323 (481)
.|+. .|+.--.+..|- .+-.--+.-+++.|-.- +.+|=-+++-+++..|-. | + . -.+|.+
T Consensus 62 ~~~Lk~I~~~~~G~d~i-d~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~g 140 (526)
T PRK13581 62 AKNLKVIGRAGVGVDNV-DVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYG 140 (526)
T ss_pred CCCCeEEEECCcccccc-cHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCC
Confidence 4554 555554444431 11111123366666421 235556677777777642 1 0 1 124566
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
++|.|+|.|..|..+|+.+... |+ +++.+|+.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~ 172 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAF-----GM-------KVIAYDPY 172 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCC
Confidence 9999999999999999998754 43 68888874
No 183
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=83.62 E-value=1.7 Score=47.27 Aligned_cols=47 Identities=23% Similarity=0.593 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
.|++.+++..+.+++. .+++|+|+|.+|.+++..+.. .|. +++++|+
T Consensus 317 ~G~~~~l~~~~~~~~~---k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R 363 (477)
T PRK09310 317 EGLFSLLKQKNIPLNN---QHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNR 363 (477)
T ss_pred HHHHHHHHhcCCCcCC---CEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeC
Confidence 3688888877777777 999999999888777776654 342 5777776
No 184
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=83.57 E-value=12 Score=39.55 Aligned_cols=124 Identities=14% Similarity=0.159 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHHHHhCC----------------C-CCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCe
Q 011618 298 GTAGVALAGLLGTVRAQGL----------------S-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (481)
Q Consensus 298 GTaaV~LAgll~Alr~~g~----------------~-l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~ 360 (481)
-||-.+++-+|.++|-... + -.++.++||.|+|+|+.|..||+.|..+. ..
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg------------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFG------------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhcc------------ce
Confidence 5777888888888874321 1 15566699999999999999999988742 13
Q ss_pred EEEEeccceeecCCC--CCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCC----CCCCCHHHHHHhhhcC
Q 011618 361 FFLLDKDGLITKERK--NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV----GGVFNEEVLKAMRESD 434 (481)
Q Consensus 361 i~lvD~~GLi~~~r~--~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~----~g~Ft~evv~~Ma~~~ 434 (481)
|. +..|. .....+..+|+. -++.|-..+ .|+++=..-- -++|+++.+..|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~~----------~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk--- 244 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAEF----------VDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK--- 244 (336)
T ss_pred ee--------eecccCCchhhHHHhcccc----------cCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---
Confidence 33 33332 123334445542 246776766 7888744321 2789999999993
Q ss_pred CCCCEEEecCCCCCCCCCCCCHHHHHhc
Q 011618 435 SVKPAIFAMSNPTMNGLFSCCVTTFFFY 462 (481)
Q Consensus 435 ~erPIIFaLSNPt~~aE~~~t~eda~~w 462 (481)
+.-+|.-.+.=.- |.-++.++.
T Consensus 245 -~g~vlVN~aRG~i-----ide~~l~ea 266 (336)
T KOG0069|consen 245 -DGAVLVNTARGAI-----IDEEALVEA 266 (336)
T ss_pred -CCeEEEecccccc-----ccHHHHHHH
Confidence 5666665554444 444544443
No 185
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.56 E-value=3.5 Score=42.47 Aligned_cols=131 Identities=17% Similarity=0.222 Sum_probs=84.9
Q ss_pred HHHHHHHHHhC--Cc---eEEEee---cCCCchHHHHHHHHhhc--CC------ccccCcchhHHHHHHHHHHHHHHhCC
Q 011618 253 DEFMEAVHARW--PK---AIVQFE---DFQMKWAFETLERYRKR--FC------MFNDDIQGTAGVALAGLLGTVRAQGL 316 (481)
Q Consensus 253 defv~av~~~~--P~---~~IqfE---Df~~~naf~iL~ryr~~--~~------~FNDDiQGTaaV~LAgll~Alr~~g~ 316 (481)
+||.+.+++.- |+ .++|+= .+.....++.+.-.+|- +. .|..|..+=.-+|-.|++.=++-.+-
T Consensus 75 ~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~i 154 (282)
T PRK14180 75 SELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGI 154 (282)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhCC
Confidence 56777777764 54 366653 44333333333322221 11 12222233356678888888888898
Q ss_pred CCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcC
Q 011618 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (481)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (481)
+++. .+++|+|.+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 155 ~l~G---k~vvViGrS~~VGkPla~lL~~-----~~-------ATVt~chs~---------------------------- 191 (282)
T PRK14180 155 KTEG---AYAVVVGASNVVGKPVSQLLLN-----AK-------ATVTTCHRF---------------------------- 191 (282)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEEcCC----------------------------
Confidence 8888 999999985 578888888764 23 245555542
Q ss_pred CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.+++ +|++|-..+.|+.|++++|+.
T Consensus 192 -T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk~ 222 (282)
T PRK14180 192 -TTDLKSHTTK--ADILIVAVGKPNFITADMVKE 222 (282)
T ss_pred -CCCHHHHhhh--cCEEEEccCCcCcCCHHHcCC
Confidence 1247777877 999999999999999998873
No 186
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.31 E-value=5.9 Score=41.07 Aligned_cols=121 Identities=14% Similarity=0.089 Sum_probs=73.2
Q ss_pred ceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccee--ecCC-CCCChhhhccccccCCcCCcCCCCC
Q 011618 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (481)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (481)
.||.|+|| |..|..+|..|+.. |+-.-.=...+.|+|.+.-. ..+. -+|.+...++..+. . ...+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~-~-----i~~~ 71 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG-----EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEI-V-----ITDD 71 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-----cccCCCCceEEEEEecCCcccccceeehhhhhccccccCce-E-----EecC
Confidence 59999999 99999988877653 33100001379999985422 1111 24444433333211 1 1234
Q ss_pred HHHHhcccCCcEEEeecCC---CCCCC------------HHHHHHhhhcCC-CCCEEEecCCCCCCCCCCCCHHHHHhcc
Q 011618 400 LLEVVRKVKPHVLLGLSGV---GGVFN------------EEVLKAMRESDS-VKPAIFAMSNPTMNGLFSCCVTTFFFYL 463 (481)
Q Consensus 400 L~e~V~~vkptvLIG~S~~---~g~Ft------------~evv~~Ma~~~~-erPIIFaLSNPt~~aE~~~t~eda~~wt 463 (481)
..+.+++ .|++|=+.+. || .| ++++..+.+ ++ ..-||+-.|||.. +..--+++++
T Consensus 72 ~~~~~~d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~~-~~~~~~iiivvsNPvD-----~~t~~~~k~s 142 (322)
T cd01338 72 PNVAFKD--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALND-VASRDVKVLVVGNPCN-----TNALIAMKNA 142 (322)
T ss_pred cHHHhCC--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHh-hCCCCeEEEEecCcHH-----HHHHHHHHHc
Confidence 5677888 8999855544 33 23 345666643 77 4889999999987 5566677766
Q ss_pred c
Q 011618 464 M 464 (481)
Q Consensus 464 ~ 464 (481)
.
T Consensus 143 g 143 (322)
T cd01338 143 P 143 (322)
T ss_pred C
Confidence 4
No 187
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=83.24 E-value=3.7 Score=39.86 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=50.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChh-hhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA-FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~e-eA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (481)
+||.|+|.|..+. +|.-+...+.. ++..+ -+..-+.+.|..-+++.- .+-..+-..|++. |.-
T Consensus 42 ~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~-and~~~~~~f~~q------------l~~ 105 (196)
T PRK10886 42 NKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAI-ANDRLHDEVYAKQ------------VRA 105 (196)
T ss_pred CEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHH-hccccHHHHHHHH------------HHH
Confidence 8999999998765 67776665541 11000 000112222222222211 1112223334432 222
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhc-CCCCCEEEecCCC
Q 011618 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRES-DSVKPAIFAMSNP 446 (481)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~~erPIIFaLSNP 446 (481)
.. -+-|++|+.|..|. |+++++.+... ...-|+|- ++++
T Consensus 106 ~~--~~gDvli~iS~SG~--s~~v~~a~~~Ak~~G~~vI~-IT~~ 145 (196)
T PRK10886 106 LG--HAGDVLLAISTRGN--SRDIVKAVEAAVTRDMTIVA-LTGY 145 (196)
T ss_pred cC--CCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCEEEE-EeCC
Confidence 12 33699999998544 78888877322 34455554 6654
No 188
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.18 E-value=3.5 Score=42.54 Aligned_cols=90 Identities=18% Similarity=0.327 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCC
Q 011618 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (481)
Q Consensus 298 GTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 376 (481)
+=.-+|-.|++.=++-.|.+++. +++||+|-+ ..|.-+|.||... |.+. . ..+.+|.++
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~-----~~~~-~--AtVtvchs~--------- 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHG---RHVAIVGRSNIVGKPLAALLMQK-----HPDT-N--ATVTLLHSQ--------- 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHhC-----cCCC-C--CEEEEeCCC---------
Confidence 33456778888888999988877 999999985 5788888887642 2110 0 134444331
Q ss_pred CChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 377 l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.++. +|++|-..+.|+.+++|+|+.
T Consensus 191 --------------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik~ 221 (287)
T PRK14181 191 --------------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIAE 221 (287)
T ss_pred --------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1348888888 999999999999999999883
No 189
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=82.90 E-value=4.9 Score=41.78 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=74.2
Q ss_pred ceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce---eecCCCCCChhhhccccccCCcCCcCCCCC
Q 011618 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL---ITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (481)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL---i~~~r~~l~~~k~~fA~~~~~~~~~~~~~~ 399 (481)
-||.|+|| |..|..+|..|+.. |+-.-+=...|.|+|.+.- .....-+|.+...++-+.. ....+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~------~i~~~ 72 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG-----ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGV------VATTD 72 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC-----CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCc------EEecC
Confidence 58999998 99999999887653 3310000127999998631 1111123443332222211 11235
Q ss_pred HHHHhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCC-CCEEEecCCCCCCCCCCCCHHHHHhccc
Q 011618 400 LLEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSV-KPAIFAMSNPTMNGLFSCCVTTFFFYLM 464 (481)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~e-rPIIFaLSNPt~~aE~~~t~eda~~wt~ 464 (481)
..+.+++ .|++|=+.+.+ |- .=+++++.+++ ++. ..||+--|||.. +..--+++++.
T Consensus 73 ~~~~~~d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~-~~~~~~iiivvsNPvD-----v~t~v~~k~s~ 144 (323)
T TIGR01759 73 PEEAFKD--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNK-VAKKDVKVLVVGNPAN-----TNALIASKNAP 144 (323)
T ss_pred hHHHhCC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHh-hCCCCeEEEEeCCcHH-----HHHHHHHHHcC
Confidence 6677888 89998555543 31 12356667754 776 889999999987 66667777773
No 190
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.63 E-value=28 Score=37.36 Aligned_cols=147 Identities=17% Similarity=0.202 Sum_probs=84.6
Q ss_pred HhCCce-EEEeecCCCchHHHHHHHHhhcCCccccCc---chhHHHHHHHHHHHHHHh---------C---C---CCCCC
Q 011618 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G---L---SLTDF 321 (481)
Q Consensus 261 ~~~P~~-~IqfEDf~~~naf~iL~ryr~~~~~FNDDi---QGTaaV~LAgll~Alr~~---------g---~---~l~dl 321 (481)
...|+. .|+.==.+..| ..+..--+.-++|+|--- ..+|=-+++.+++.+|-. | + .-.+|
T Consensus 71 ~~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L 149 (409)
T PRK11790 71 AAAEKLVAIGCFCIGTNQ-VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEV 149 (409)
T ss_pred hhCCCCeEEEECceeccc-ccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccC
Confidence 345665 66665555544 333333334588998532 234556788888887732 1 1 12456
Q ss_pred CCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHH
Q 011618 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLL 401 (481)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ 401 (481)
.+.++.|+|.|..|..+|+.+... |+ +++.+|+.. ...... + ....+|+
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~f-----Gm-------~V~~~d~~~-----~~~~~~-----~---------~~~~~l~ 198 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESL-----GM-------RVYFYDIED-----KLPLGN-----A---------RQVGSLE 198 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCCc-----ccccCC-----c---------eecCCHH
Confidence 669999999999999999988754 33 688888631 000000 0 0123577
Q ss_pred HHhcccCCcEEEeecC----CCCCCCHHHHHHhhhcCCCCCEEEecCC
Q 011618 402 EVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (481)
Q Consensus 402 e~V~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~~erPIIFaLSN 445 (481)
|+++. .|+++=.-- .-+.|+++.+..|. +..++.-.|.
T Consensus 199 ell~~--sDiVslh~Plt~~T~~li~~~~l~~mk----~ga~lIN~aR 240 (409)
T PRK11790 199 ELLAQ--SDVVSLHVPETPSTKNMIGAEELALMK----PGAILINASR 240 (409)
T ss_pred HHHhh--CCEEEEcCCCChHHhhccCHHHHhcCC----CCeEEEECCC
Confidence 77766 666652210 12567777777772 3445554443
No 191
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=82.30 E-value=1 Score=50.06 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=34.1
Q ss_pred CCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 318 LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 318 l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
|.-+++.|.+.+|||+-|++||+-|+..++ ++|.++|.-
T Consensus 335 Ld~is~~KcLLLGAGTLGC~VAR~Ll~WGv-----------RhITFvDn~ 373 (669)
T KOG2337|consen 335 LDIISQTKCLLLGAGTLGCNVARNLLGWGV-----------RHITFVDNG 373 (669)
T ss_pred hhhhhcceeEEecCcccchHHHHHHHhhcc-----------ceEEEEecC
Confidence 334566999999999999999999999987 699999974
No 192
>PRK07411 hypothetical protein; Validated
Probab=82.16 E-value=1.1 Score=47.47 Aligned_cols=109 Identities=14% Similarity=0.191 Sum_probs=65.4
Q ss_pred CCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC---CC------CCChhhhcccc
Q 011618 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE---RK------NLDPAAAPFAK 386 (481)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~---r~------~l~~~k~~fA~ 386 (481)
++|++ .||+|+|+|.-|.-+|+.|+.+++ ++|.++|.+ .|... |. ++-..|..-|.
T Consensus 34 ~~L~~---~~VlivG~GGlG~~va~~La~~Gv-----------g~l~lvD~D-~ve~sNL~RQ~l~~~~dvG~~Ka~~a~ 98 (390)
T PRK07411 34 KRLKA---ASVLCIGTGGLGSPLLLYLAAAGI-----------GRIGIVDFD-VVDSSNLQRQVIHGTSWVGKPKIESAK 98 (390)
T ss_pred HHHhc---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEECCC-EecccccCcCcccChHHCCCcHHHHHH
Confidence 34555 999999999999999999988765 689999987 33221 11 11112221111
Q ss_pred ----ccCCc---CCcC---CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 387 ----DPGDF---MGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 387 ----~~~~~---~~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
..++. .... ...+..+.++. .|++|-+.. ..=++.+|..++. ....|.|++-.
T Consensus 99 ~~l~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vvd~~d--~~~~r~~ln~~~~-~~~~p~v~~~~ 161 (390)
T PRK07411 99 NRILEINPYCQVDLYETRLSSENALDILAP--YDVVVDGTD--NFPTRYLVNDACV-LLNKPNVYGSI 161 (390)
T ss_pred HHHHHHCCCCeEEEEecccCHHhHHHHHhC--CCEEEECCC--CHHHHHHHHHHHH-HcCCCEEEEEE
Confidence 11110 0000 11234566766 799988764 3336777878765 56689887543
No 193
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=81.92 E-value=1.4 Score=40.51 Aligned_cols=30 Identities=30% Similarity=0.634 Sum_probs=20.9
Q ss_pred EEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 327 v~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+|+|||.||+..|..|.+ .|+ +.+.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999987765 354 348899987
No 194
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.71 E-value=2.8 Score=42.47 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=25.0
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
||.|+|||+.|..+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999998764 3 357777774
No 195
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.61 E-value=4.1 Score=42.24 Aligned_cols=96 Identities=16% Similarity=0.271 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-.|++.=++..+.+++. ++++|+|.+ .-|.-+|.||..... ..+ ..+.+|.++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~~~-~~~-------aTVtvchs~----------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEG---ADVVVVGRSDIVGKPMANLLIQKAD-GGN-------ATVTVCHSR----------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCcccHHHHHHHHhcCcc-CCC-------CEEEEeCCC-----------
Confidence 346778888888888888777 999999985 578888888754211 001 134444432
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
..+|.+.+++ +|++|-+.+.|+.++.++|+. ..||+=-.
T Consensus 195 ------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~-------gaiVIDvG 233 (297)
T PRK14167 195 ------------------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLSE-------GATVIDVG 233 (297)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC-------CCEEEEcc
Confidence 1348888888 999999999999999998873 45665444
No 196
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=81.58 E-value=4 Score=43.53 Aligned_cols=84 Identities=11% Similarity=0.230 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-+|++.=++..+.+++. +++||+|-+ ..|.-+|.||... | ..+.+|.++
T Consensus 211 ~PCTp~avielL~~y~i~l~G---K~vvVIGRS~iVGkPLa~LL~~~-----~-------ATVTicHs~----------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKG---KRAVVIGRSNIVGMPAALLLQRE-----D-------ATVSIVHSR----------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccccHHHHHHHHHC-----C-------CeEEEeCCC-----------
Confidence 455677788888888888777 999999985 5678888777642 3 246666432
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.+++ +|++|-..+.|+.++.++|+.
T Consensus 265 ------------------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK~ 295 (364)
T PLN02616 265 ------------------TKNPEEITRE--ADIIISAVGQPNMVRGSWIKP 295 (364)
T ss_pred ------------------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcCC
Confidence 1348888888 999999999999999999884
No 197
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=81.30 E-value=1.2 Score=47.10 Aligned_cols=107 Identities=15% Similarity=0.270 Sum_probs=62.4
Q ss_pred CCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC---CC------CCChhhhcccc
Q 011618 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE---RK------NLDPAAAPFAK 386 (481)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~---r~------~l~~~k~~fA~ 386 (481)
++|.+ .||+|+|+|..|.-+|..|+.+++ ++|.++|.+ .|... |. ++-..|..-|+
T Consensus 38 ~~L~~---~~VlviG~GGlGs~va~~La~~Gv-----------g~i~lvD~D-~ve~sNL~Rq~l~~~~diG~~Ka~~a~ 102 (392)
T PRK07878 38 KRLKN---ARVLVIGAGGLGSPTLLYLAAAGV-----------GTLGIVEFD-VVDESNLQRQVIHGQSDVGRSKAQSAR 102 (392)
T ss_pred HHHhc---CCEEEECCCHHHHHHHHHHHHcCC-----------CeEEEECCC-EecCcccccccccChhcCCChHHHHHH
Confidence 44556 999999999999999999987655 689999986 22221 11 12112222221
Q ss_pred ----ccCCcCC---cC---CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEe
Q 011618 387 ----DPGDFMG---LR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 442 (481)
Q Consensus 387 ----~~~~~~~---~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFa 442 (481)
..+++-. .. ...++.+.++. .|++|-++.- .=++-++-.++. ....|.|++
T Consensus 103 ~~l~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~-~~~~p~v~~ 163 (392)
T PRK07878 103 DSIVEINPLVNVRLHEFRLDPSNAVELFSQ--YDLILDGTDN--FATRYLVNDAAV-LAGKPYVWG 163 (392)
T ss_pred HHHHHhCCCcEEEEEeccCChhHHHHHHhc--CCEEEECCCC--HHHHHHHHHHHH-HcCCCEEEE
Confidence 1111100 00 11235566766 7999876532 224555666664 456888775
No 198
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=81.05 E-value=1.6 Score=40.04 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=54.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
.||-|+|.|..|.+||+.|... |. +++.+|+. ++..+.+.+... ....|+.|+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----------~~~~~~~~~~g~-----~~~~s~~e~ 54 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----------PEKAEALAEAGA-----EVADSPAEA 54 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----------HHHHHHHHHTTE-----EEESSHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----------hhhhhhhHHhhh-----hhhhhhhhH
Confidence 5899999999999999999653 53 68888862 112223332211 124689999
Q ss_pred hcccCCcEEEeecCCCCCCCHHHHHH--hhhcCCCCCEEEecCCCCC
Q 011618 404 VRKVKPHVLLGLSGVGGVFNEEVLKA--MRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 404 V~~vkptvLIG~S~~~g~Ft~evv~~--Ma~~~~erPIIFaLSNPt~ 448 (481)
++. .|++|-+-. .+.=.++++.. +.+...+..||.=+|+-.+
T Consensus 55 ~~~--~dvvi~~v~-~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p 98 (163)
T PF03446_consen 55 AEQ--ADVVILCVP-DDDAVEAVLFGENILAGLRPGKIIIDMSTISP 98 (163)
T ss_dssp HHH--BSEEEE-SS-SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--H
T ss_pred hhc--ccceEeecc-cchhhhhhhhhhHHhhccccceEEEecCCcch
Confidence 999 687775432 22334555554 3333456778877776555
No 199
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=80.94 E-value=5.5 Score=40.19 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=26.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+|.|+|+|..|..+|..+... |.. .+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~~-----~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GLA-----GEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CCC-----cEEEEEECC
Confidence 5899999999999999888653 431 368888875
No 200
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.83 E-value=4.9 Score=41.72 Aligned_cols=84 Identities=21% Similarity=0.361 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-.|++.=++-.|.+++. ++++|+|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~G---k~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~----------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAG---KKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR----------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC-----------
Confidence 346777888888888888777 999999985 578888888764 232 35555332
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.+++ +|++|-..+.|+.|+.++|+.
T Consensus 192 ------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~ 222 (297)
T PRK14186 192 ------------------TQDLASITRE--ADILVAAAGRPNLIGAEMVKP 222 (297)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1348888888 999999999999999998883
No 201
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.48 E-value=7.9 Score=38.60 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.||.|+|+|..|.+||+.|...
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~ 25 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA 25 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC
Confidence 6999999999999999988653
No 202
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=80.43 E-value=62 Score=35.31 Aligned_cols=193 Identities=18% Similarity=0.168 Sum_probs=122.0
Q ss_pred cCCChhhhhHhHHHHHHHHHHhC-CceEEEeecCCCc--hHHHHHHHHhhcC-----Ccc------cc----CcchhHHH
Q 011618 241 PRLEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMK--WAFETLERYRKRF-----CMF------ND----DIQGTAGV 302 (481)
Q Consensus 241 ~R~~g~~Y~~~vdefv~av~~~~-P~~~IqfEDf~~~--naf~iL~ryr~~~-----~~F------ND----DiQGTaaV 302 (481)
+..+..|-.+|...|++++...- |+.-|-=+|++.. .---+.+.|+.-. +|| .- ----||-=
T Consensus 110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 44778888999999999999988 8899999999863 2223566665421 111 11 12223322
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhh
Q 011618 303 ALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA 382 (481)
Q Consensus 303 ~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~ 382 (481)
+.-++-.|++..|.+|+. .||.|-|-|.+|.-.|+.+.+. |. |=+-+=|++|.|+.. +.|+..+.
T Consensus 190 v~~~~~~a~~~~g~~l~G---~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~-~Gld~~~l 254 (411)
T COG0334 190 VFYAIREALKALGDDLEG---ARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDE-DGLDVEAL 254 (411)
T ss_pred hHHHHHHHHHHcCCCcCC---CEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecC-CCCCHHHH
Confidence 222233777777777666 9999999999999999988754 42 557777999988876 34553332
Q ss_pred ccccc-----cCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHH
Q 011618 383 PFAKD-----PGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVT 457 (481)
Q Consensus 383 ~fA~~-----~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~e 457 (481)
...++ ... .+ ....+= |.+-.+..||||=+.. .+.+|++-++.+.+ + +|.=-+|=-...| ++
T Consensus 255 ~~~~~~~~~v~~~-~g-a~~i~~-~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a----k-~V~EgAN~P~t~e----A~ 321 (411)
T COG0334 255 LELKERRGSVAEY-AG-AEYITN-EELLEVDCDILIPCAL-ENVITEDNADQLKA----K-IVVEGANGPTTPE----AD 321 (411)
T ss_pred HHHhhhhhhHHhh-cC-ceEccc-cccccccCcEEccccc-ccccchhhHHHhhh----c-EEEeccCCCCCHH----HH
Confidence 21111 000 00 000111 3344467899997775 69999999998843 2 7777776433245 66
Q ss_pred HHHh
Q 011618 458 TFFF 461 (481)
Q Consensus 458 da~~ 461 (481)
+.+.
T Consensus 322 ~i~~ 325 (411)
T COG0334 322 EILL 325 (411)
T ss_pred HHHH
Confidence 6665
No 203
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.41 E-value=3.9 Score=42.10 Aligned_cols=116 Identities=18% Similarity=0.261 Sum_probs=70.7
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
||.|+|||..|..+|..|+. .|+- +.+.|+|.+-=..++. -+|.+.. .|....+ .. -..++ .+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~~-----~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~-~~--i~~~~-y~~ 65 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGLF-----SEIVLIDVNEGVAEGEALDFHHAT-ALTYSTN-TK--IRAGD-YDD 65 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCcchhhHHHHHHHhhh-ccCCCCC-EE--EEECC-HHH
Confidence 78999999999999998764 2442 5799999731111111 1343322 2221000 00 01123 466
Q ss_pred hcccCCcEEEeecCC---CCCCC--------------HHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhccc
Q 011618 404 VRKVKPHVLLGLSGV---GGVFN--------------EEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYLM 464 (481)
Q Consensus 404 V~~vkptvLIG~S~~---~g~Ft--------------~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt~ 464 (481)
+++ .|++|=+.+. || -| +++++++.+ ++...|++-.|||.. +..--+++++.
T Consensus 66 ~~~--aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~-~~p~~i~ivvsNPvD-----v~t~~~~k~sg 134 (307)
T cd05290 66 CAD--ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITK-VTKEAVIILITNPLD-----IAVYIAATEFD 134 (307)
T ss_pred hCC--CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEecCcHH-----HHHHHHHHHhC
Confidence 777 8998855554 34 23 466777754 889999999999987 55556666653
No 204
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=80.28 E-value=1.7 Score=41.14 Aligned_cols=31 Identities=35% Similarity=0.672 Sum_probs=24.3
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
||.|+|||..|.|||-++..+ |. ++.++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 689999999999999998865 43 68888874
No 205
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=80.27 E-value=4.5 Score=44.48 Aligned_cols=32 Identities=34% Similarity=0.668 Sum_probs=26.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+||.|+|+|..|.|||..+..+ |. .++++|++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a-----G~-------~V~l~d~~ 37 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA-----GH-------QVLLYDIR 37 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 6899999999999999988754 53 57777764
No 206
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=80.22 E-value=3.4 Score=39.75 Aligned_cols=102 Identities=25% Similarity=0.288 Sum_probs=58.8
Q ss_pred eEEEeC-ccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccC--CcCCcCCCCCHH
Q 011618 325 KIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPG--DFMGLREGASLL 401 (481)
Q Consensus 325 riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~--~~~~~~~~~~L~ 401 (481)
||.|+| +|..|..+|..+.+. | .+++++|++ . +.+......+..... .........+..
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~--~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ 63 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----L--EKAEEAAAKALEELGHGGSDIKVTGADNA 63 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----H--HHHHHHHHHHHhhccccCCCceEEEeChH
Confidence 799997 899999999998653 4 367777663 1 112111111110000 000000113567
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCCC
Q 011618 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN 449 (481)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~ 449 (481)
|+++. +|++| ++. +-...+++++.++.... ..+|+.++||.+.
T Consensus 64 ea~~~--aDvVi-lav-p~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 64 EAAKR--ADVVI-LAV-PWDHVLKTLESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred HHHhc--CCEEE-EEC-CHHHHHHHHHHHHHhcc-CCEEEEeccCcee
Confidence 88877 78777 443 34445777887754223 4799999999874
No 207
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=80.05 E-value=3.2 Score=43.52 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=18.7
Q ss_pred eEEEeCccHHHHHHHHHHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (481)
||.|+|||+-|+++|..+...
T Consensus 1 kI~VIGaG~wGtALA~~la~n 21 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN 21 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc
Confidence 689999999999999998653
No 208
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.98 E-value=5.2 Score=41.43 Aligned_cols=88 Identities=13% Similarity=0.202 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-+|++.=++-.+.+++. +++||+|.+ ..|.-+|.||.. .|.+. . ..+.+|.|+
T Consensus 137 ~PcTp~av~~lL~~~~i~l~G---K~vvViGrS~iVGkPla~lL~~-----~~~~~-~--aTVtvchs~----------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSG---KKCVVLGRSNIVGKPMAQLMMQ-----KAYPG-D--CTVTVCHSR----------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHc-----CCCCC-C--CEEEEecCC-----------
Confidence 345777888888888888777 999999985 578888877754 22110 0 124444332
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.+++ +|++|-..+.|+.++.|+|+.
T Consensus 195 ------------------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 225 (293)
T PRK14185 195 ------------------SKNLKKECLE--ADIIIAALGQPEFVKADMVKE 225 (293)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1348888888 999999999999999988873
No 209
>PLN02306 hydroxypyruvate reductase
Probab=79.92 E-value=11 Score=40.15 Aligned_cols=102 Identities=20% Similarity=0.251 Sum_probs=60.1
Q ss_pred CCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhcccc-----ccCCcCCc
Q 011618 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK-----DPGDFMGL 394 (481)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~-----~~~~~~~~ 394 (481)
+|.++++.|+|.|..|..+|+++..+| |+ +++.+|+..- +........+.. ...+. ..
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~f----Gm-------~V~~~d~~~~-----~~~~~~~~~~~~~l~~~~~~~~-~~ 224 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------NLIYYDLYQS-----TRLEKFVTAYGQFLKANGEQPV-TW 224 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcC----CC-------EEEEECCCCc-----hhhhhhhhhhcccccccccccc-cc
Confidence 566799999999999999999986432 33 6888887421 111110011100 00000 00
Q ss_pred CCCCCHHHHhcccCCcEEEeec----CCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 395 REGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 395 ~~~~~L~e~V~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
....+|.|+++. .|+++-.- ..-|.|+++.++.|. +..++.=.|
T Consensus 225 ~~~~~L~ell~~--sDiV~lh~Plt~~T~~lin~~~l~~MK----~ga~lIN~a 272 (386)
T PLN02306 225 KRASSMEEVLRE--ADVISLHPVLDKTTYHLINKERLALMK----KEAVLVNAS 272 (386)
T ss_pred cccCCHHHHHhh--CCEEEEeCCCChhhhhhcCHHHHHhCC----CCeEEEECC
Confidence 012479999888 88887631 123788999999983 445555444
No 210
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=79.71 E-value=3.3 Score=45.19 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=65.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
.+|-|+|.|..|.++|..|... |. +++++|++ .++ ..+..+.-...... .....+++|+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~--~~~l~~~~~~~g~~---i~~~~s~~e~ 60 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK--TEEFVKKAKEGNTR---VKGYHTLEEL 60 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH--HHHHHHhhhhcCCc---ceecCCHHHH
Confidence 4799999999999999998754 43 57888772 111 11111110000000 0124579999
Q ss_pred hccc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 404 VRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 404 V~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
++.. +|+++| +.-.++...+++++.+.....+..||.=+||=.+
T Consensus 61 v~~l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~ 105 (470)
T PTZ00142 61 VNSLKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWY 105 (470)
T ss_pred HhcCCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCH
Confidence 9764 588555 3334687888888887654567789998998554
No 211
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=79.71 E-value=1.2 Score=47.03 Aligned_cols=106 Identities=24% Similarity=0.379 Sum_probs=65.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
-|++|+|.|-+|+--|++.+ |+. .++.++|.+ .+| |......|..+..-.. .....++|+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r--l~~ldd~f~~rv~~~~--st~~~iee~ 228 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR--LRQLDDLFGGRVHTLY--STPSNIEEA 228 (371)
T ss_pred ccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH--HhhhhHhhCceeEEEE--cCHHHHHHH
Confidence 79999999999999998754 333 367778763 222 3333333433210000 012459999
Q ss_pred hcccCCcEEEee-----cCCCCCCCHHHHHHhhhc------CCCCCEEEecCCCCCCCC
Q 011618 404 VRKVKPHVLLGL-----SGVGGVFNEEVLKAMRES------DSVKPAIFAMSNPTMNGL 451 (481)
Q Consensus 404 V~~vkptvLIG~-----S~~~g~Ft~evv~~Ma~~------~~erPIIFaLSNPt~~aE 451 (481)
|++ .|++||. +..|.+.|+|+++.|..- -.+.==+|-=|-||+..+
T Consensus 229 v~~--aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~ 285 (371)
T COG0686 229 VKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDD 285 (371)
T ss_pred hhh--ccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCC
Confidence 988 9999987 344678999999999420 011122355567777766
No 212
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=79.69 E-value=5.1 Score=42.42 Aligned_cols=84 Identities=14% Similarity=0.245 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCcc-HHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCC
Q 011618 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (481)
Q Consensus 300 aaV~LAgll~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~ 378 (481)
.-+|-+|++.=++-.+.+++. +++||+|-+ ..|.-+|.||.. .|. .+.+|.++
T Consensus 194 ~PCTp~avi~LL~~~~i~l~G---K~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~----------- 247 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAG---KNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF----------- 247 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC-----------
Confidence 456777888888888888777 999999975 568888877754 232 35555442
Q ss_pred hhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.++. +|++|-..+.|+.++.++|+.
T Consensus 248 ------------------T~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk~ 278 (345)
T PLN02897 248 ------------------TKDPEQITRK--ADIVIAAAGIPNLVRGSWLKP 278 (345)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1247888888 999999999999999999884
No 213
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=79.65 E-value=5.5 Score=41.82 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=24.8
Q ss_pred CCCCCCCCceEEEeCccHHHHHHHHHHHHH
Q 011618 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.++..|++.+|.|+|.|+.|.++|..|.+.
T Consensus 10 ~~~~~L~gktIgIIG~GsmG~AlA~~L~~s 39 (330)
T PRK05479 10 ADLSLIKGKKVAIIGYGSQGHAHALNLRDS 39 (330)
T ss_pred CChhhhCCCEEEEEeeHHHHHHHHHHHHHC
Confidence 445556779999999999999999998654
No 214
>PRK06270 homoserine dehydrogenase; Provisional
Probab=79.55 E-value=16 Score=38.07 Aligned_cols=111 Identities=22% Similarity=0.251 Sum_probs=65.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHH---HHHHcCCChhhhcCeEEEEeccceeecCCCCCChh-hhccccccCCcCCc---CC
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA---AARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA-AAPFAKDPGDFMGL---RE 396 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~---~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~-k~~fA~~~~~~~~~---~~ 396 (481)
.||.++|.|..|.+++++|.+. +.++.|+.. +=+-++|++|.+...+. ++.. ...++......... ..
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~----~vvai~d~~~~~~~~~G-i~~~~~~~~~~~~~~~~~~~~~~~ 77 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDL----KVVAIADSSGSAIDPDG-LDLELALKVKEETGKLADYPEGGG 77 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCCcccCcCC-CCHHHHHHHHhccCCcccCccccc
Confidence 6899999999999999998753 222234321 23557899998887653 3322 12233321110000 01
Q ss_pred CCCHHHHhcccCCcEEEeecCC---CCCCCHHHHHHhhhcCCCCCEEE
Q 011618 397 GASLLEVVRKVKPHVLLGLSGV---GGVFNEEVLKAMRESDSVKPAIF 441 (481)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~---~g~Ft~evv~~Ma~~~~erPIIF 441 (481)
..++.|+++...+|++|=++.. ++-...+++++..+ +..+||.
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVt 123 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVT 123 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEc
Confidence 2479999988889999977642 12233556444333 5788886
No 215
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=79.36 E-value=1.6 Score=42.65 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=26.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccee
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 370 (481)
-+|+|+|||.||+..|..|... |. ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhcccc
Confidence 5799999999999999888754 54 58888886443
No 216
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=78.76 E-value=1.9 Score=45.00 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=28.8
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
||+++|||.-|.-+|+.|+.+++ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----------CeEEEECCC
Confidence 68999999999999999988765 689999986
No 217
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=78.69 E-value=11 Score=40.60 Aligned_cols=128 Identities=19% Similarity=0.247 Sum_probs=86.3
Q ss_pred ccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeec
Q 011618 293 NDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (481)
Q Consensus 293 NDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~ 372 (481)
.|.-.||+--++-|++.|.. .=+.- ..+||.|=|--|-|||..+... | .++++.+-
T Consensus 185 FDNrYGtgqS~~DgI~RaTn---~liaG---K~vVV~GYG~vGrG~A~~~rg~-----G-------A~ViVtEv------ 240 (420)
T COG0499 185 FDNRYGTGQSLLDGILRATN---VLLAG---KNVVVAGYGWVGRGIAMRLRGM-----G-------ARVIVTEV------ 240 (420)
T ss_pred cccccccchhHHHHHHhhhc---eeecC---ceEEEecccccchHHHHHhhcC-----C-------CeEEEEec------
Confidence 37789999999999987654 44444 8999999999999999887543 3 24553322
Q ss_pred CCCCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCC-CCCC
Q 011618 373 ERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT-MNGL 451 (481)
Q Consensus 373 ~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt-~~aE 451 (481)
+.+...+..+ + | -.--+++||++. .|++|=+++.-++.+.|.++.|. +..|+ +|-- -..|
T Consensus 241 --DPI~AleA~M--d-----G-f~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----DgaIl---~N~GHFd~E 301 (420)
T COG0499 241 --DPIRALEAAM--D-----G-FRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DGAIL---ANAGHFDVE 301 (420)
T ss_pred --CchHHHHHhh--c-----C-cEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CCeEE---eccccccee
Confidence 1122222111 1 1 012459999998 89999999999999999999993 44443 3443 2346
Q ss_pred CCCCHHH----HHhcccC
Q 011618 452 FSCCVTT----FFFYLMA 465 (481)
Q Consensus 452 ~~~t~ed----a~~wt~g 465 (481)
+..+. +.+|.+-
T Consensus 302 --I~~~~L~~~~~~~~~v 317 (420)
T COG0499 302 --IDVAGLEELAVEKREV 317 (420)
T ss_pred --ccHHHHHHhhhhHhcc
Confidence 65554 6677763
No 218
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=78.67 E-value=2.5 Score=34.07 Aligned_cols=35 Identities=20% Similarity=0.510 Sum_probs=29.1
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceee
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~ 371 (481)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999988543 3 5899999877666
No 219
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=78.42 E-value=1.2 Score=52.92 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=32.8
Q ss_pred CCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+|.+ .||+++|||+.|+-+++.|+.+++ ..|- ..+|.++|-+
T Consensus 416 kL~~---~kVlvvGaGGlG~e~lknLal~Gv-~~~~-----~G~i~IvD~D 457 (1008)
T TIGR01408 416 KLQN---LNIFLVGCGAIGCEMLKNFALMGV-GTGK-----KGMITVTDPD 457 (1008)
T ss_pred HHhh---CcEEEECCChHHHHHHHHHHHhCC-CcCC-----CCeEEEECCC
Confidence 4455 999999999999999999988755 1111 2589999987
No 220
>PRK08291 ectoine utilization protein EutC; Validated
Probab=78.03 E-value=7 Score=40.30 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=50.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
++++|+|+|..|..++..+... .++ +++.++++. .+ ........+.+... .. .....++.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~--~a~~l~~~~~~~~g-~~-v~~~~d~~~a 194 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AA--KAEAYAADLRAELG-IP-VTVARDVHEA 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH--HHHHHHHHHhhccC-ce-EEEeCCHHHH
Confidence 6899999999988887766542 233 578888762 11 12222222221100 00 0124679999
Q ss_pred hcccCCcEEEeecCC-CCCCCHHHHHH
Q 011618 404 VRKVKPHVLLGLSGV-GGVFNEEVLKA 429 (481)
Q Consensus 404 V~~vkptvLIG~S~~-~g~Ft~evv~~ 429 (481)
++. +|++|-++.. .-+|+.++++.
T Consensus 195 l~~--aDiVi~aT~s~~p~i~~~~l~~ 219 (330)
T PRK08291 195 VAG--ADIIVTTTPSEEPILKAEWLHP 219 (330)
T ss_pred Hcc--CCEEEEeeCCCCcEecHHHcCC
Confidence 987 8999876553 35677776653
No 221
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=77.90 E-value=1.9 Score=44.23 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=30.5
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+.+|+|+|+|..|.-||+.|+.+++ ++|.++|.+
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGV-----------g~itI~D~d 52 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGV-----------KSVTLHDTK 52 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCC-----------CeEEEEcCC
Confidence 3999999999999999999987755 689999987
No 222
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=77.88 E-value=1.9 Score=41.65 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=25.2
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 69999999999999988754 353 58899974
No 223
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=77.67 E-value=4.2 Score=42.84 Aligned_cols=33 Identities=33% Similarity=0.525 Sum_probs=25.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
.+|.|+|||+=|+++|..+.+. |- .=++|..|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~ 34 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDE 34 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCH
Confidence 6899999999999999998764 31 136777664
No 224
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=77.65 E-value=5.1 Score=40.81 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=68.4
Q ss_pred EEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-ceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHh
Q 011618 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (481)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V 404 (481)
|.|+|||..|..+|-.++. .|+. ..+.++|.+ .++.....+|.+....+.. . .. ....+ .+.+
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~~-----~el~l~D~~~~~~~g~~~DL~~~~~~~~~-~-~i---~~~~~-~~~l 64 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGLA-----SELVLVDVNEEKAKGDALDLSHASAFLAT-G-TI---VRGGD-YADA 64 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHHHhHHHhccccCC-C-eE---EECCC-HHHh
Confidence 5799999999999976654 3543 479999973 2221111245544433321 1 10 11234 4577
Q ss_pred cccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcc
Q 011618 405 RKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYL 463 (481)
Q Consensus 405 ~~vkptvLIG~S~~---~g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt 463 (481)
++ .|++|=+.+. +|- +=+++++.+. +++..-+|+-.|||.. +...-+.+++
T Consensus 65 ~~--aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~-~~~p~~~viv~sNP~d-----~~~~~~~~~s 129 (300)
T cd00300 65 AD--ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLK-KYGPDAIILVVSNPVD-----ILTYVAQKLS 129 (300)
T ss_pred CC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhCCCeEEEEccChHH-----HHHHHHHHHh
Confidence 77 7888844443 231 1234666664 4889999999999987 5555666654
No 225
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=77.58 E-value=7.3 Score=46.70 Aligned_cols=98 Identities=8% Similarity=0.092 Sum_probs=53.9
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhc------------Ce---EEE--Eeccceeec-CCCCCChhhhcc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR------------NK---FFL--LDKDGLITK-ERKNLDPAAAPF 384 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~------------~~---i~l--vD~~GLi~~-~r~~l~~~k~~f 384 (481)
-.+|||.|+|.+|.|.++++....+ + =++.++-+ ++ +|- +.+.-.+.+ +.+.--+.+..|
T Consensus 203 P~~vVi~G~G~Vg~gA~~i~~~lg~-~-~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~ 280 (1042)
T PLN02819 203 PLVFVFTGSGNVSQGAQEIFKLLPH-T-FVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYY 280 (1042)
T ss_pred CeEEEEeCCchHHHHHHHHHhhcCC-C-ccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhc
Confidence 4899999999999999998876533 1 13333321 11 110 111111111 101111122234
Q ss_pred ccccCCcCCcCCC-CCH-HHHhcccCCcEEEeec----CCCCCCCHH-HHHHhh
Q 011618 385 AKDPGDFMGLREG-ASL-LEVVRKVKPHVLLGLS----GVGGVFNEE-VLKAMR 431 (481)
Q Consensus 385 A~~~~~~~~~~~~-~~L-~e~V~~vkptvLIG~S----~~~g~Ft~e-vv~~Ma 431 (481)
+++. .+ ..+ ++++.. .|+|||+= ..|-++|++ +++.|.
T Consensus 281 ~~Pe-------~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk 325 (1042)
T PLN02819 281 AHPE-------HYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTR 325 (1042)
T ss_pred cCch-------hccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhc
Confidence 4332 22 334 468877 89999983 246789999 888884
No 226
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=77.12 E-value=2.3 Score=42.33 Aligned_cols=104 Identities=17% Similarity=0.244 Sum_probs=58.0
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC--CC------CCChhhhcccc----ccCC-c
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK----DPGD-F 391 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~--r~------~l~~~k~~fA~----~~~~-~ 391 (481)
||+++|+|..|.-+++.|+.+ |+ ++|.++|.+=+=..+ |. ++-..|..-|. ..++ +
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v 69 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNC 69 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCC
Confidence 689999999999999999875 44 689999997332111 11 12222322221 1111 0
Q ss_pred CC--cCCC----CC-HHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 392 MG--LREG----AS-LLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 392 ~~--~~~~----~~-L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
+- .... .. -.+-+++ .|++|.+.- ..-++.++-.++. ....|+|.+=+
T Consensus 70 ~i~~~~~~i~~~~~~~~~f~~~--~DvVi~a~D--n~~aR~~ln~~c~-~~~iplI~~g~ 124 (234)
T cd01484 70 KVVPYQNKVGPEQDFNDTFFEQ--FHIIVNALD--NIIARRYVNGMLI-FLIVPLIESGT 124 (234)
T ss_pred EEEEEeccCChhhhchHHHHhC--CCEEEECCC--CHHHHHHHHHHHH-HcCCCEEEEcc
Confidence 00 0000 11 1344555 788886543 3335677777765 45688876543
No 227
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=77.02 E-value=3.1 Score=43.25 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=27.5
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+.||||+|+|.||+..|+.|... |.+ .+|.++|+.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~-----~~~-----~~I~li~~e 37 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQ-----GFT-----GELHLFSDE 37 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhh-----CCC-----CCEEEeCCC
Confidence 47999999999999999998753 321 368888765
No 228
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=76.57 E-value=2.4 Score=41.77 Aligned_cols=38 Identities=34% Similarity=0.491 Sum_probs=31.5
Q ss_pred CCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
++|++ -|++++|+|.-|..++..|+.+.+ ++++++|.+
T Consensus 26 ~~l~~---s~vlvvG~GglG~~~~~~la~aGv-----------g~l~i~D~d 63 (254)
T COG0476 26 QKLKD---SRVLVVGAGGLGSPAAKYLALAGV-----------GKLTIVDFD 63 (254)
T ss_pred HHHhh---CCEEEEecChhHHHHHHHHHHcCC-----------CeEEEEcCC
Confidence 34555 899999999999999999988755 569999885
No 229
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.55 E-value=9.9 Score=38.87 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=66.1
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
||.|+|+|..|..+|..+... |+ ...++++|.+-=...+. .++.+.. +|-.+. . -...+. ++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-----g~-----~~ev~l~D~~~~~~~g~a~dl~~~~-~~~~~~-~----i~~~d~-~~ 64 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-----GL-----ASEIVLVDINKAKAEGEAMDLAHGT-PFVKPV-R----IYAGDY-AD 64 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-----CC-----CCEEEEEECCchhhhhHHHHHHccc-cccCCe-E----EeeCCH-HH
Confidence 799999999999999877643 44 25799999741100000 0122211 121111 0 012344 55
Q ss_pred hcccCCcEEEeecCCCCCC--------------CHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcc
Q 011618 404 VRKVKPHVLLGLSGVGGVF--------------NEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYL 463 (481)
Q Consensus 404 V~~vkptvLIG~S~~~g~F--------------t~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt 463 (481)
+++ .|++|=+.+.+..- =+++++.+.+ ++..-+|+-.+||.. ....-+++.+
T Consensus 65 l~~--aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~tNP~d-----~~~~~~~~~s 130 (308)
T cd05292 65 CKG--ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVTNPVD-----VLTYVAYKLS 130 (308)
T ss_pred hCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH-----HHHHHHHHHH
Confidence 777 78877444433211 1356666643 788889999999975 5556666665
No 230
>PLN02688 pyrroline-5-carboxylate reductase
Probab=76.46 E-value=10 Score=37.07 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.7
Q ss_pred eEEEeCccHHHHHHHHHHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (481)
||.|+|.|..|.+||+-|++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~ 22 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS 22 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC
Confidence 799999999999999998753
No 231
>PRK06141 ornithine cyclodeaminase; Validated
Probab=76.22 E-value=12 Score=38.45 Aligned_cols=105 Identities=14% Similarity=0.062 Sum_probs=61.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
.+++|+|+|..|..++..+... .+. ++|+++|+. .. ........+.+...+. ....++.++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~--~a~~~a~~~~~~g~~~---~~~~~~~~a 186 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PA--KAEALAAELRAQGFDA---EVVTDLEAA 186 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH--HHHHHHHHHHhcCCce---EEeCCHHHH
Confidence 7999999999999998876552 122 578888763 11 1222222222111010 124678999
Q ss_pred hcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHH
Q 011618 404 VRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVT 457 (481)
Q Consensus 404 V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~e 457 (481)
++. .|++|-+++.+ -+|+.++++. ..-|+..=|++..+.| +.++
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~~------g~~i~~ig~~~~~~~E--l~~~ 231 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLKP------GTHLDLVGNFTPDMRE--CDDE 231 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcCC------CCEEEeeCCCCccccc--CCHH
Confidence 987 99998776643 3466655532 1223333355666778 7664
No 232
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=76.13 E-value=16 Score=37.73 Aligned_cols=104 Identities=12% Similarity=0.046 Sum_probs=63.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
.++.|+|+|.-|-..++.+... . . -++|+++|+. .++ ...+...+.+...+. ....+.+|+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~---~-~------~~~v~V~~r~----~~~--~~~~~~~~~~~g~~v---~~~~~~~ea 189 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRV---F-D------LEEVSVYCRT----PST--REKFALRASDYEVPV---RAATDPREA 189 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhc---C-C------CCEEEEECCC----HHH--HHHHHHHHHhhCCcE---EEeCCHHHH
Confidence 6899999999877665544331 1 1 2688888872 111 222222222111010 124679999
Q ss_pred hcccCCcEEEeecC-CCCCCCHHHHHHhhhcCCCCCEEEecCCCCC-CCCCCCCHH
Q 011618 404 VRKVKPHVLLGLSG-VGGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NGLFSCCVT 457 (481)
Q Consensus 404 V~~vkptvLIG~S~-~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~-~aE~~~t~e 457 (481)
++. .|++|-++. ....|..++++ +..-|-++.-.+| +.| +.++
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~-------~g~~v~~vGs~~p~~~E--ld~~ 234 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS-------EGTHINAIGADAPGKQE--LDPE 234 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC-------CCCEEEecCCCCccccc--CCHH
Confidence 987 899997653 23567777664 3456888876666 678 8775
No 233
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=76.08 E-value=2.9 Score=43.41 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-cHHHHHHHHHHHH
Q 011618 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQ 344 (481)
Q Consensus 297 QGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~ 344 (481)
-+||-++.-+++.+...+|..|++ ..+.|+|| |..|.+||+.|..
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsq---atvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQ---ATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHH---CeEEEecCCchHHHHHHHHhcc
Confidence 368888888999999999999998 99999998 9999999999865
No 234
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=76.01 E-value=3.5 Score=43.48 Aligned_cols=86 Identities=26% Similarity=0.339 Sum_probs=52.4
Q ss_pred CCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCc
Q 011618 315 GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL 394 (481)
Q Consensus 315 g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~ 394 (481)
..+|..|++.+|.|+|-|+.|.++|+.+.+. |+ +++..|+.+ +. . ..|.... +
T Consensus 8 d~~~~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~~---~s---~-----~~A~~~G-~--- 60 (335)
T PRK13403 8 DANVELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRPG---KS---F-----EVAKADG-F--- 60 (335)
T ss_pred cCChhhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECcc---hh---h-----HHHHHcC-C---
Confidence 3456667789999999999999999998765 43 466666531 11 1 1111110 0
Q ss_pred CCCCCHHHHhcccCCcEEEeec---CCCCCCCHHHHHHh
Q 011618 395 REGASLLEVVRKVKPHVLLGLS---GVGGVFNEEVLKAM 430 (481)
Q Consensus 395 ~~~~~L~e~V~~vkptvLIG~S---~~~g~Ft~evv~~M 430 (481)
...++.|+++. +|+++=+- .+.+++.++++..|
T Consensus 61 -~v~sl~Eaak~--ADVV~llLPd~~t~~V~~~eil~~M 96 (335)
T PRK13403 61 -EVMSVSEAVRT--AQVVQMLLPDEQQAHVYKAEVEENL 96 (335)
T ss_pred -EECCHHHHHhc--CCEEEEeCCChHHHHHHHHHHHhcC
Confidence 12379999988 78877332 11244445555555
No 235
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=75.94 E-value=5.6 Score=40.30 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.||+|+|+|+.|..+|-.|.++
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~ 27 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA 27 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC
Confidence 6999999999999999888664
No 236
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=75.76 E-value=4.4 Score=44.78 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=24.3
Q ss_pred CCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
++.+++|+|||.||.+||..|.+ .|. +|+++|+
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~-----~G~-------~V~i~nR 410 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKE-----KGA-------RVVIANR 410 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEcC
Confidence 33899999999777777666653 352 6888887
No 237
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=75.69 E-value=6 Score=40.88 Aligned_cols=132 Identities=15% Similarity=0.225 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhC--Cce---EEEeecCCCchHHHHHHHHhh--cCCcccc--------CcchhHHHHHHHHHHHHHHhCC
Q 011618 252 VDEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERYRK--RFCMFND--------DIQGTAGVALAGLLGTVRAQGL 316 (481)
Q Consensus 252 vdefv~av~~~~--P~~---~IqfEDf~~~naf~iL~ryr~--~~~~FND--------DiQGTaaV~LAgll~Alr~~g~ 316 (481)
-+|+.+.+.++- |++ ++||==...-++..+|+.--. .+==||- ...+--.+|-+|++--++-.+.
T Consensus 73 ~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i 152 (283)
T COG0190 73 EEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGI 152 (283)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCC
Confidence 356666666664 543 666654444455555554321 1111111 1333446788999999999999
Q ss_pred CCCCCCCceEEEeCccH-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcC
Q 011618 317 SLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (481)
Q Consensus 317 ~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~ 395 (481)
+|.. .++||+|.+. .|--+|.+|..+ + ..+.+|+|+
T Consensus 153 ~l~G---k~~vVVGrS~iVGkPla~lL~~~-----n-------aTVtvcHs~---------------------------- 189 (283)
T COG0190 153 DLRG---KNVVVVGRSNIVGKPLALLLLNA-----N-------ATVTVCHSR---------------------------- 189 (283)
T ss_pred CCCC---CEEEEECCCCcCcHHHHHHHHhC-----C-------CEEEEEcCC----------------------------
Confidence 8888 9999999974 577788777653 2 235555552
Q ss_pred CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHH
Q 011618 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (481)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~ 429 (481)
..+|.+.++. +|++|-.-+.|+.|+.++|+.
T Consensus 190 -T~~l~~~~k~--ADIvv~AvG~p~~i~~d~vk~ 220 (283)
T COG0190 190 -TKDLASITKN--ADIVVVAVGKPHFIKADMVKP 220 (283)
T ss_pred -CCCHHHHhhh--CCEEEEecCCccccccccccC
Confidence 2347788888 999999999999999888874
No 238
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=75.56 E-value=14 Score=40.75 Aligned_cols=92 Identities=24% Similarity=0.220 Sum_probs=54.4
Q ss_pred CCce-EEEeecCCCchHHHHHHHHhhcCCccccC---cchhHHHHHHHHHHHHHHh---------C----CC--CCCCCC
Q 011618 263 WPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDD---IQGTAGVALAGLLGTVRAQ---------G----LS--LTDFAD 323 (481)
Q Consensus 263 ~P~~-~IqfEDf~~~naf~iL~ryr~~~~~FNDD---iQGTaaV~LAgll~Alr~~---------g----~~--l~dl~~ 323 (481)
.|+. .|+.--.+..| ..+-.--+.-+++.|-- -+.+|=-++|.+++..|-. | .. -.+|.+
T Consensus 60 ~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~g 138 (525)
T TIGR01327 60 APKLKVIGRAGVGVDN-IDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYG 138 (525)
T ss_pred CCCceEEEECCcccch-hcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCC
Confidence 3554 55555554444 22221112336666632 2245556677777766531 1 00 124555
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+++.|+|-|..|..+|+.+... |+ +++.+|+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~ 170 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-----GM-------KVLAYDPY 170 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCC
Confidence 9999999999999999998754 43 68888864
No 239
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=75.47 E-value=3.3 Score=43.02 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=27.3
Q ss_pred EEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccee
Q 011618 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (481)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 370 (481)
|+|+|||.||+.+|..+.++ +.| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 79999999999999998544 234 478889886544
No 240
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=75.41 E-value=3.6 Score=44.22 Aligned_cols=192 Identities=10% Similarity=0.141 Sum_probs=96.3
Q ss_pred ccccccCChhhHHHHHhcCCCCCeeEE-EEecCceeeccCCCCCccccccch-hhhhh------hhhcCCCCCceecEEe
Q 011618 149 GMYFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIG-KLDVY------VAAAGINPQRILPVML 220 (481)
Q Consensus 149 Glyis~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~iG-Kl~LY------~a~gGI~P~~~LPV~L 220 (481)
|-|-...|-..+.++|... ++++. ++|.++.+=-+-..+-..+-|.+. ....+ ..+ ||. .+..
T Consensus 204 G~~~~~~d~~el~~lL~~~---Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~e~~-GiP---~~~~-- 274 (456)
T TIGR01283 204 GEFNVAGEFWHVKPLLEKL---GIRVLATITGDSRYAEVQTAHRAKLNMVQCSKSMINLARKMEEKY-GIP---YFEG-- 274 (456)
T ss_pred cCCCCcccHHHHHHHHHHc---CCeEEEEeCCCCcHHHHHhcccCcEEEEECHhHHHHHHHHHHHHc-CCC---EEec--
Confidence 3344445666788888865 67776 567776665555555555544432 11112 122 444 2211
Q ss_pred eccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEEEeecCCCchHHHHHHHHhhcCCccccCcchhH
Q 011618 221 DVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTA 300 (481)
Q Consensus 221 DvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTa 300 (481)
+ ++|+ +-.++|++.+.+.+..- ++ ..++-++.++.+.+
T Consensus 275 ------------~-~~G~-----------~~T~~~L~~Ia~~lg~~-----~~-~~~~~~~i~~e~~~------------ 312 (456)
T TIGR01283 275 ------------S-FYGI-----------EDTSKALRDIADLFGDE-----EL-LKRTEELIAREEAK------------ 312 (456)
T ss_pred ------------C-CCcH-----------HHHHHHHHHHHHHhCCh-----HH-HHHHHHHHHHHHHH------------
Confidence 1 1332 23678888887776421 00 01233444444433
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChh
Q 011618 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA 380 (481)
Q Consensus 301 aV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~ 380 (481)
+..++.-....|.. .|+++++.+.-..++++.+.+ .|+. +..+... ....++....
T Consensus 313 ------~~~~l~~~~~~L~G---krv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~~d~~~l 368 (456)
T TIGR01283 313 ------IRPALEPYRERLKG---KKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTEEDYARI 368 (456)
T ss_pred ------HHHHHHHHHHHcCC---CEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCHHHHHHH
Confidence 23333333344555 899999888888999987654 4652 3333211 1111111111
Q ss_pred hhccccccCCcCCcCCCCCHHHHhcccCCcEEEeec
Q 011618 381 AAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS 416 (481)
Q Consensus 381 k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S 416 (481)
+..+ .+........+...+++.++..+||++||-|
T Consensus 369 ~~~~-~~~~~v~~~~d~~e~~~~i~~~~pDl~ig~~ 403 (456)
T TIGR01283 369 RELM-GEGTVMLDDANPRELLKLLLEYKADLLIAGG 403 (456)
T ss_pred HHHc-CCCeEEEeCCCHHHHHHHHhhcCCCEEEEcc
Confidence 1111 1100000001223588889999999999854
No 241
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=75.02 E-value=9 Score=41.87 Aligned_cols=99 Identities=19% Similarity=0.199 Sum_probs=61.8
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHh
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V 404 (481)
.|-|+|.|..|..+|..|.+. |. +++++|+. .. .....++.+... . +.....++.|++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~--~~~~l~~~~~~g-~---~~~~~~s~~e~v 58 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PE--KTDEFLAEHAKG-K---KIVGAYSIEEFV 58 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HH--HHHHHHhhccCC-C---CceecCCHHHHH
Confidence 378999999999999998654 43 57777763 11 122222111100 0 001235688888
Q ss_pred ccc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCC
Q 011618 405 RKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (481)
Q Consensus 405 ~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNP 446 (481)
+.. +|+++| ++-.+|...++++..+.....+..||.=.||=
T Consensus 59 ~~l~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns 100 (467)
T TIGR00873 59 QSLERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGNS 100 (467)
T ss_pred hhcCCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCCc
Confidence 653 588666 33346788888988886544677899999973
No 242
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=74.05 E-value=2.8 Score=43.24 Aligned_cols=32 Identities=34% Similarity=0.549 Sum_probs=28.2
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
||+++|||.-|.-+++.|+.+++ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv-----------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF-----------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----------CeEEEECCC
Confidence 69999999999999999987644 589999987
No 243
>PRK06823 ornithine cyclodeaminase; Validated
Probab=73.06 E-value=24 Score=36.55 Aligned_cols=105 Identities=10% Similarity=0.058 Sum_probs=65.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
.++.++|+|.-+...++.++... . .++|+++|+. .++ ...+...+.+...+ .....+.+|+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~----~------i~~v~v~~r~----~~~--a~~~~~~~~~~~~~---v~~~~~~~~a 189 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVT----D------CRQLWVWGRS----ETA--LEEYRQYAQALGFA---VNTTLDAAEV 189 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcC----C------CCEEEEECCC----HHH--HHHHHHHHHhcCCc---EEEECCHHHH
Confidence 68999999999888877766531 2 2678888773 111 12222211111111 1124679999
Q ss_pred hcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCEEEecCCCCC-CCCCCCCHHH
Q 011618 404 VRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NGLFSCCVTT 458 (481)
Q Consensus 404 V~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~-~aE~~~t~ed 458 (481)
|+. +||++-+++. ..+|..++++ +.-.|-+...-+| +.| +.++-
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~-------~G~hi~~iGs~~p~~~E--ld~~~ 235 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ-------PGTHITAVGADSPGKQE--LDAEL 235 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC-------CCcEEEecCCCCccccc--CCHHH
Confidence 988 9999976553 3678888876 2345777765554 678 77754
No 244
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=72.80 E-value=3.3 Score=42.84 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=27.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
.+|+|+|||.+|+.+|..|.+. | .++.++|++-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999998763 4 3689999864
No 245
>PRK07340 ornithine cyclodeaminase; Validated
Probab=72.58 E-value=23 Score=36.31 Aligned_cols=102 Identities=9% Similarity=0.040 Sum_probs=61.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
.+++|+|+|..|...++.+... .+. ++|+++|+. .++ .......+.....+ ....+++|+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~--a~~~a~~~~~~~~~----~~~~~~~~a 185 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS--AAAFCAHARALGPT----AEPLDGEAI 185 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH--HHHHHHHHHhcCCe----eEECCHHHH
Confidence 7999999999998888877653 233 478888773 111 11122222111000 013578999
Q ss_pred hcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCEEEecCCCCC-CCCCCCCHH
Q 011618 404 VRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPTM-NGLFSCCVT 457 (481)
Q Consensus 404 V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~~erPIIFaLSNPt~-~aE~~~t~e 457 (481)
++. .|++|-++..+ .+|+. +++ +.--|-++.-.+| +.| +.+|
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~-~~~-------~g~hi~~iGs~~p~~~E--l~~~ 229 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE-AAR-------AGRLVVAVGAFTPDMAE--LAPR 229 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc-cCC-------CCCEEEecCCCCCCccc--CCHH
Confidence 986 99999877643 45654 332 3456777765444 678 7765
No 246
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.57 E-value=9.8 Score=37.26 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=26.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.||.|+|+|..|..+|..+... |.. ..+++++|++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~~----~~~v~v~~r~ 37 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GVP----AKDIIVSDPS 37 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CCC----cceEEEEcCC
Confidence 5899999999999999987653 321 1467777763
No 247
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=72.44 E-value=8.4 Score=38.45 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=24.8
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
||.|+|+|..|.++|..+... |. +++++|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999988753 43 57777764
No 248
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=72.35 E-value=31 Score=35.87 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=68.1
Q ss_pred cCCccccCc---chhHHHHHHHHHHHHHHh---------CC---------CCCCCCCceEEEeCccHHHHHHHHHHHHHH
Q 011618 288 RFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL---------SLTDFADQKIVVVGAGSAGLGVLKMAVQAA 346 (481)
Q Consensus 288 ~~~~FNDDi---QGTaaV~LAgll~Alr~~---------g~---------~l~dl~~~riv~~GAGsAg~GiA~ll~~~~ 346 (481)
.+++.|--- ..+|=-+++.+|+..|-. |. .-.+|.++++.|+|.|..|..+|+.+..+
T Consensus 89 gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~- 167 (323)
T PRK15409 89 KILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFG- 167 (323)
T ss_pred CCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhc-
Confidence 355555222 235556677777777632 10 01356679999999999999999987522
Q ss_pred HHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecC----CCCCC
Q 011618 347 ARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG----VGGVF 422 (481)
Q Consensus 347 ~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~----~~g~F 422 (481)
-|+ ++...|+.. + .+....+ . ....+|.|+++. .|+++=.-- .-|.|
T Consensus 168 ---fgm-------~V~~~~~~~---~-----~~~~~~~---~------~~~~~l~ell~~--sDvv~lh~plt~~T~~li 218 (323)
T PRK15409 168 ---FNM-------PILYNARRH---H-----KEAEERF---N------ARYCDLDTLLQE--SDFVCIILPLTDETHHLF 218 (323)
T ss_pred ---CCC-------EEEEECCCC---c-----hhhHHhc---C------cEecCHHHHHHh--CCEEEEeCCCChHHhhcc
Confidence 133 465566521 0 0000000 0 012367777776 677652110 12677
Q ss_pred CHHHHHHhhhcCCCCCEEEecC
Q 011618 423 NEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 423 t~evv~~Ma~~~~erPIIFaLS 444 (481)
+++.+..|. +..++.=.|
T Consensus 219 ~~~~l~~mk----~ga~lIN~a 236 (323)
T PRK15409 219 GAEQFAKMK----SSAIFINAG 236 (323)
T ss_pred CHHHHhcCC----CCeEEEECC
Confidence 888888873 445555433
No 249
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=72.18 E-value=3.9 Score=42.52 Aligned_cols=32 Identities=38% Similarity=0.584 Sum_probs=28.2
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
||+++|+|.-|.-+|+.|+.+++ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-----------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-----------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-----------CeEEEEcCC
Confidence 68999999999999999986644 689999986
No 250
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=71.99 E-value=3.9 Score=39.62 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=22.5
Q ss_pred CCCceEEEeCccHHHHHHHHHHHHHH
Q 011618 321 FADQKIVVVGAGSAGLGVLKMAVQAA 346 (481)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~ 346 (481)
|++.|+||+|+|..|..-++.|+.+.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~g 32 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAG 32 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC
Confidence 45599999999999999999988753
No 251
>PRK07877 hypothetical protein; Provisional
Probab=71.47 E-value=6.5 Score=45.35 Aligned_cols=105 Identities=17% Similarity=0.154 Sum_probs=65.0
Q ss_pred CCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCCh----------hhhccccc---
Q 011618 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP----------AAAPFAKD--- 387 (481)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~----------~k~~fA~~--- 387 (481)
|++.||+|+|+| .|..+|..|+.+++ -.+|.++|-+=+=. .+|+. .|..-|+.
T Consensus 105 L~~~~V~IvG~G-lGs~~a~~LaraGv----------vG~l~lvD~D~ve~---sNLnRq~~~~~diG~~Kv~~a~~~l~ 170 (722)
T PRK07877 105 LGRLRIGVVGLS-VGHAIAHTLAAEGL----------CGELRLADFDTLEL---SNLNRVPAGVFDLGVNKAVVAARRIA 170 (722)
T ss_pred HhcCCEEEEEec-HHHHHHHHHHHccC----------CCeEEEEcCCEEcc---cccccccCChhhcccHHHHHHHHHHH
Confidence 333999999998 89999988887642 15899999874322 23332 22222211
Q ss_pred -cCC-c--CCcC---CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC
Q 011618 388 -PGD-F--MGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (481)
Q Consensus 388 -~~~-~--~~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS 444 (481)
-++ . .... ...++.+.+++ .|++|-++- +.=++-+|...|. ....|+|++.+
T Consensus 171 ~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D--~~~~R~~ln~~a~-~~~iP~i~~~~ 229 (722)
T PRK07877 171 ELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECD--SLDVKVLLREAAR-ARRIPVLMATS 229 (722)
T ss_pred HHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCC--CHHHHHHHHHHHH-HcCCCEEEEcC
Confidence 111 0 0000 12357777776 899998774 4446667777664 66899999885
No 252
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=71.12 E-value=4.3 Score=37.73 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=22.1
Q ss_pred CCCceEEEeCccHHHHHHHHHHHHH
Q 011618 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
|++.+|||+|+|..|.-.++.|.++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ 35 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDT 35 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC
Confidence 5569999999999999999988875
No 253
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=70.87 E-value=3.5 Score=43.23 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.4
Q ss_pred eEEEeCccHHHHHHHHHHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (481)
+|+|+|||.||...|..+..+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~ 22 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASA 22 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhC
Confidence 699999999999999887653
No 254
>PRK06847 hypothetical protein; Provisional
Probab=70.20 E-value=4.2 Score=41.22 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.0
Q ss_pred ceEEEeCccHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (481)
.+|+|+|||.||+..|..|..
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHh
Confidence 689999999999999998765
No 255
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=70.10 E-value=26 Score=37.75 Aligned_cols=96 Identities=8% Similarity=0.055 Sum_probs=52.6
Q ss_pred HHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhcccccc
Q 011618 309 GTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP 388 (481)
Q Consensus 309 ~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~ 388 (481)
.++.-....|.. .|++|+|-+.-..++++.+.+ .|+.. .. +++.+... ..+.. ...
T Consensus 300 ~~l~~~~~~l~G---krvai~~~~~~~~~l~~~l~e-----lGm~v----~~--------~~~~~~~~---~~~~~-~~~ 355 (432)
T TIGR01285 300 DAMLDTHFFLGG---KKVAIAAEPDLLAAWATFFTS-----MGAQI----VA--------AVTTTGSP---LLQKL-PVE 355 (432)
T ss_pred HHHHHHHHhhCC---CEEEEEcCHHHHHHHHHHHHH-----CCCEE----EE--------EEeCCCCH---HHHhC-CcC
Confidence 333333334445 899999988888999998754 46532 11 12222211 00000 000
Q ss_pred CCcCCcCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEE
Q 011618 389 GDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAI 440 (481)
Q Consensus 389 ~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPII 440 (481)
.-.. .+...+++.++..+||++||-|- .+.+-+.+ .-|.|
T Consensus 356 ~~~~--~D~~~l~~~i~~~~~dliig~s~-----~k~~A~~l-----~ip~i 395 (432)
T TIGR01285 356 TVVI--GDLEDLEDLACAAGADLLITNSH-----GRALAQRL-----ALPLV 395 (432)
T ss_pred cEEe--CCHHHHHHHHhhcCCCEEEECcc-----hHHHHHHc-----CCCEE
Confidence 0000 12245888999999999998663 34454444 56776
No 256
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=70.02 E-value=4.6 Score=38.99 Aligned_cols=34 Identities=15% Similarity=0.374 Sum_probs=26.9
Q ss_pred CCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
|++.++||+|+|..|.-.|+.|..+ | .+|++++.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 4559999999999999988888764 3 36777764
No 257
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=69.84 E-value=2.6 Score=42.00 Aligned_cols=33 Identities=27% Similarity=0.523 Sum_probs=25.7
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+..|+|+|||.||+..|..+.. .|+ ++.++|++
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~ 57 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERK 57 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 3789999999999999987654 353 57777765
No 258
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=69.80 E-value=4.4 Score=43.58 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=27.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
-+++|+|||.+|+++|.-|.++ |.+ ++.++|+..
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 6899999999999999998876 443 277777764
No 259
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=69.62 E-value=4.4 Score=43.83 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.2
Q ss_pred ceEEEeCccHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (481)
.+|+|+|||.||+..|..+.+
T Consensus 11 ~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 11 QHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCEEEECCcHHHHHHHHHHHh
Confidence 799999999999999988764
No 260
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=69.61 E-value=4.5 Score=40.49 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=26.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999988654 43 58888864
No 261
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=69.60 E-value=8.2 Score=39.60 Aligned_cols=105 Identities=13% Similarity=0.172 Sum_probs=62.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
.++.|+|+|.-|..-++.++.. ..+ ++|.+.|+. .+ ....+.+.+.+... .+ .....+++|+
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~--~a~~f~~~~~~~~~-~~-v~~~~~~~ea 179 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FD--HARAFAERFSKEFG-VD-IRPVDNAEAA 179 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH--HHHHHHHHHHHhcC-Cc-EEEeCCHHHH
Confidence 7999999999888777666653 122 678877762 11 22233333322110 00 1124689999
Q ss_pred hcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCEEEec-CCCCCCCCCCCCHH
Q 011618 404 VRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAM-SNPTMNGLFSCCVT 457 (481)
Q Consensus 404 V~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~~erPIIFaL-SNPt~~aE~~~t~e 457 (481)
|+. .||++-+++. ..+|..++++. ..-|-++ |+--.+.| +.++
T Consensus 180 v~~--aDIV~taT~s~~P~~~~~~l~p-------g~hV~aiGs~~p~~~E--l~~~ 224 (301)
T PRK06407 180 LRD--ADTITSITNSDTPIFNRKYLGD-------EYHVNLAGSNYPNRRE--AEHS 224 (301)
T ss_pred Hhc--CCEEEEecCCCCcEecHHHcCC-------CceEEecCCCCCCccc--CCHH
Confidence 988 9999977553 36688888763 1234444 33334677 7665
No 262
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=69.42 E-value=2.2 Score=44.15 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.+|+|+|||-||+..|..|.++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 3799999999999999998875
No 263
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=69.37 E-value=10 Score=37.25 Aligned_cols=47 Identities=30% Similarity=0.452 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
+..+.|++..+.. .. .+++|+|+|+.|...+.+... .|. ++|+.+|+
T Consensus 107 ~ta~~al~~~~~~-~g---~~VlV~G~G~vG~~~~~~ak~-----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGDL-KG---RRVLVVGAGMLGLTAAAAAAA-----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccCC-CC---CEEEEECCCHHHHHHHHHHHH-----cCC------CEEEEECC
Confidence 3445566655543 44 799999999877766555432 353 45777764
No 264
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=69.37 E-value=4 Score=42.17 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.1
Q ss_pred eEEEeCccHHHHHHHHHHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (481)
.|+|+|||.||+..|..+...
T Consensus 2 DVvIVGaGpAG~~aA~~La~~ 22 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA 22 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC
Confidence 489999999999999887653
No 265
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=69.06 E-value=9.1 Score=38.67 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=28.1
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 307 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 307 ll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
.+.|++..+.. .. ++++|.|+|+.|...+.+.... |. ++++.+|+
T Consensus 158 a~~al~~~~~~-~g---~~VlV~G~G~vG~~aiqlak~~-----G~------~~Vi~~~~ 202 (343)
T PRK09880 158 AIHAAHQAGDL-QG---KRVFVSGVGPIGCLIVAAVKTL-----GA------AEIVCADV 202 (343)
T ss_pred HHHHHHhcCCC-CC---CEEEEECCCHHHHHHHHHHHHc-----CC------cEEEEEeC
Confidence 35555544433 34 7999999998887776554432 43 35776665
No 266
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=69.05 E-value=1.1e+02 Score=30.57 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=34.6
Q ss_pred CcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcccCCcccccc
Q 011618 409 PHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYLMAARSSFLT 472 (481)
Q Consensus 409 ptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt~g~r~~f~~ 472 (481)
+|++. .++.-+++.+++.++ ..+.|+++-++.... + .++++.-++.= .|-+|++
T Consensus 174 AD~v~----v~~~~~~~~~~~~~~-~~~~Pl~~~~~~~~~--~--~~~~~l~~lG~-~~v~~~~ 227 (243)
T cd00377 174 ADGIF----VEGLKDPEEIRAFAE-APDVPLNVNMTPGGN--L--LTVAELAELGV-RRVSYGL 227 (243)
T ss_pred CCEEE----eCCCCCHHHHHHHHh-cCCCCEEEEecCCCC--C--CCHHHHHHCCC-eEEEECh
Confidence 55554 234448888888876 567888886544332 5 77888888844 3666654
No 267
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=68.84 E-value=27 Score=34.33 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=18.0
Q ss_pred eEEEeCccHHHHHHHHHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~ 344 (481)
||.|+|+|..|..+++-|..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~ 21 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLT 21 (258)
T ss_pred eEEEECcCHHHHHHHHHHHh
Confidence 69999999999999998864
No 268
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=68.70 E-value=4.6 Score=45.33 Aligned_cols=33 Identities=27% Similarity=0.610 Sum_probs=26.9
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+.+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~-----G~-------~V~V~E~~ 359 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARN-----GV-------AVTVYDRH 359 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 38999999999999999888753 53 57888874
No 269
>PLN02268 probable polyamine oxidase
Probab=68.65 E-value=1.9 Score=45.02 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=19.1
Q ss_pred eEEEeCccHHHHHHHHHHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (481)
+|+|+|||-||+..|..|.++
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~ 22 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA 22 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC
Confidence 799999999999999999764
No 270
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=68.48 E-value=27 Score=37.49 Aligned_cols=83 Identities=11% Similarity=0.119 Sum_probs=45.0
Q ss_pred CCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCC-CCChhhhccccccC---C
Q 011618 315 GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPG---D 390 (481)
Q Consensus 315 g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~-~l~~~k~~fA~~~~---~ 390 (481)
...|.. .|++|+|-.+-.+++++.|.+ .|+.. +. +++.... ...+.-+.+.+... +
T Consensus 298 ~~~l~g---krv~i~g~~~~~~~la~~L~e-----lGm~v------~~------~~~~~~~~~~~~~~~~~l~~~~~~~~ 357 (435)
T cd01974 298 HQYLHG---KKFALYGDPDFLIGLTSFLLE-----LGMEP------VH------VLTGNGGKRFEKEMQALLDASPYGAG 357 (435)
T ss_pred HHhcCC---CEEEEEcChHHHHHHHHHHHH-----CCCEE------EE------EEeCCCCHHHHHHHHHHHhhcCCCCC
Confidence 334445 999999988888999988875 36532 11 2222111 11111111111100 0
Q ss_pred --cCCcCCCCCHHHHhcccCCcEEEeecC
Q 011618 391 --FMGLREGASLLEVVRKVKPHVLLGLSG 417 (481)
Q Consensus 391 --~~~~~~~~~L~e~V~~vkptvLIG~S~ 417 (481)
.....+...+++.++..+||++||-|.
T Consensus 358 ~~v~~~~d~~e~~~~i~~~~pDliiG~s~ 386 (435)
T cd01974 358 AKVYPGKDLWHLRSLLFTEPVDLLIGNTY 386 (435)
T ss_pred cEEEECCCHHHHHHHHhhcCCCEEEECcc
Confidence 000012345788889999999999874
No 271
>PRK07233 hypothetical protein; Provisional
Probab=68.27 E-value=4.1 Score=41.78 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=25.2
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
||+|+|||-||+..|..|.+. | .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999999888653 5 357777776
No 272
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=68.19 E-value=5.2 Score=39.12 Aligned_cols=31 Identities=32% Similarity=0.583 Sum_probs=26.8
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.|+|+|||-+|+.+|..|.+ .| .++.++|+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeec
Confidence 38999999999999998876 35 379999998
No 273
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=68.12 E-value=4.8 Score=43.19 Aligned_cols=32 Identities=34% Similarity=0.645 Sum_probs=26.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~-----~G~-------~V~vie~~ 175 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLAR-----AGH-------KVTVFERA 175 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 799999999999999988764 353 58889875
No 274
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=67.98 E-value=5.6 Score=42.17 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=26.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.||||+|+|.||+..|+.|... +- .-+|.++|+.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 4899999999999999998642 11 1368889886
No 275
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=67.64 E-value=84 Score=31.91 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=16.7
Q ss_pred ceEEEeCccHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (481)
++++|+|||..|+..+.++..
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~ 185 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQ 185 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 699999999888777666654
No 276
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=67.58 E-value=14 Score=37.08 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=25.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcC-CChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~G-ls~eeA~~~i~lvD~~ 367 (481)
+||.|+|+|..|..+|..+... | ++ ..+++++|++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCC
Confidence 4799999999999999988653 3 21 1357777763
No 277
>PRK08163 salicylate hydroxylase; Provisional
Probab=67.58 E-value=4.9 Score=41.10 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.9
Q ss_pred ceEEEeCccHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (481)
.+|+|+|||.||+..|-.|..
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHh
Confidence 689999999999999988764
No 278
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=67.49 E-value=4.9 Score=43.70 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=29.1
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
||+++|||+.|+-+++.|+.+++ -.|- ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv-~~g~-----~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGV-GTGE-----SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CcCC-----CCeEEEECCC
Confidence 68999999999999999987755 1121 1589999986
No 279
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=67.47 E-value=7.5 Score=40.05 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=26.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
.+|||+|+|.||+..|+.|... +- .-+|.+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~~-----~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----DA-----HIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----Cc-----CCCEEEEeCCC
Confidence 4899999999999999988553 11 13688887654
No 280
>PRK14852 hypothetical protein; Provisional
Probab=67.41 E-value=9.3 Score=45.57 Aligned_cols=129 Identities=15% Similarity=0.147 Sum_probs=74.9
Q ss_pred CCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC--CC------CCChhhhcccc-
Q 011618 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK- 386 (481)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~--r~------~l~~~k~~fA~- 386 (481)
++|+. .||+|+|+|..|.-||..|+.+++ ++|.++|-+=+=..+ |. ++-..|..-+.
T Consensus 328 ~kL~~---srVlVvGlGGlGs~ia~~LAraGV-----------G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~ 393 (989)
T PRK14852 328 RRLLR---SRVAIAGLGGVGGIHLMTLARTGI-----------GNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTE 393 (989)
T ss_pred HHHhc---CcEEEECCcHHHHHHHHHHHHcCC-----------CeEEEEcCCEecccccccccCCChhhCCChHHHHHHH
Confidence 34555 999999999999999999887655 689999987332221 11 22222322222
Q ss_pred ---ccCCcCC---cC---CCCCHHHHhcccCCcEEEeecCCCCCCCH---HHHHHhhhcCCCCCEEEecC----------
Q 011618 387 ---DPGDFMG---LR---EGASLLEVVRKVKPHVLLGLSGVGGVFNE---EVLKAMRESDSVKPAIFAMS---------- 444 (481)
Q Consensus 387 ---~~~~~~~---~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft~---evv~~Ma~~~~erPIIFaLS---------- 444 (481)
.-++.-. .. ...++.+.+++ .|++|-+. .-|+- ..+-..|. ....|+|.+-+
T Consensus 394 ~l~~INP~v~I~~~~~~I~~en~~~fl~~--~DiVVDa~---D~~~~~~rr~l~~~c~-~~~IP~I~ag~~G~~g~v~v~ 467 (989)
T PRK14852 394 RALSVNPFLDIRSFPEGVAAETIDAFLKD--VDLLVDGI---DFFALDIRRRLFNRAL-ELGIPVITAGPLGYSCALLVF 467 (989)
T ss_pred HHHHHCCCCeEEEEecCCCHHHHHHHhhC--CCEEEECC---CCccHHHHHHHHHHHH-HcCCCEEEeeccccCeeEEEE
Confidence 1111000 00 12356677776 79988544 33443 23333343 56799998765
Q ss_pred CCCCCCCCCCCHHHHHhcccCCcccc
Q 011618 445 NPTMNGLFSCCVTTFFFYLMAARSSF 470 (481)
Q Consensus 445 NPt~~aE~~~t~eda~~wt~g~r~~f 470 (481)
+|-. .+.++.|.|.++ |.++
T Consensus 468 ~p~~-----~~~~~~f~~~~~-~p~~ 487 (989)
T PRK14852 468 MPGG-----MNFDSYFGIDDD-TPPM 487 (989)
T ss_pred cCCC-----CCHHHhCCCCCC-CchH
Confidence 3433 667788888764 5543
No 281
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.40 E-value=5.2 Score=40.48 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=19.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.||.|+|||..|.|||.++..+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~ 27 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA 27 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC
Confidence 4899999999999999988754
No 282
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=67.39 E-value=23 Score=37.53 Aligned_cols=193 Identities=10% Similarity=0.148 Sum_probs=95.9
Q ss_pred ccccccCChhhHHHHHhcCCCCCeeEE-EEecCceeeccCCCCCccccccchh-hhhhh------hhcCCCCCceecEEe
Q 011618 149 GMYFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGK-LDVYV------AAAGINPQRILPVML 220 (481)
Q Consensus 149 Glyis~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~iGK-l~LY~------a~gGI~P~~~LPV~L 220 (481)
|-|....|-..+.++|+.. ++++. +.+.++.+=-+-..+...+-|..+. ...+. .+ |+. .+.+.
T Consensus 165 g~~~~~~d~~el~~lL~~~---Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~~~f-Gip---~~~~~- 236 (410)
T cd01968 165 GEFNVAGELWGVKPLLEKL---GIRVLASITGDSRVDEIRRAHRAKLNVVQCSKSMIYLARKMEEKY-GIP---YIEVS- 236 (410)
T ss_pred CCCCCcccHHHHHHHHHHc---CCeEEEEeCCCCCHHHHHhhhhCcEEEEEchhHHHHHHHHHHHHh-CCC---eEecC-
Confidence 3343345666788888865 56766 4667755555555555555554321 22221 22 444 22111
Q ss_pred eccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEEEeecCCCchHHHHHHHHhhcCCccccCcchhH
Q 011618 221 DVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTA 300 (481)
Q Consensus 221 DvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTa 300 (481)
++|+ +-.++|++.+.+.+..-.+ ...+-..+++.+.++
T Consensus 237 --------------p~G~-----------~~t~~~l~~ia~~~g~~~~------~~~~~~~i~~e~~~~----------- 274 (410)
T cd01968 237 --------------FYGI-----------RDTSKSLRNIAELLGDEEL------IERTEELIAREEARL----------- 274 (410)
T ss_pred --------------cCcH-----------HHHHHHHHHHHHHhCCchh------HHHHHHHHHHHHHHH-----------
Confidence 1332 2367888888776631100 123344555555432
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChh
Q 011618 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA 380 (481)
Q Consensus 301 aV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~ 380 (481)
..++.-....|.. .|++|+|.+.-..++++++.+ .|+. +..+-+. ....++....
T Consensus 275 -------~~~l~~~~~~l~g---krv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~~~~~~~ 329 (410)
T cd01968 275 -------RPELAPYRARLEG---KKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTKEDYERI 329 (410)
T ss_pred -------HHHHHHHHHHhCC---CEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCHHHHHHH
Confidence 2333333334445 899999988888999886644 4663 3333211 1111111111
Q ss_pred hhccccccCCcCCcCCCCCHHHHhcccCCcEEEeecC
Q 011618 381 AAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG 417 (481)
Q Consensus 381 k~~fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~ 417 (481)
+..+ .....+....+...+.+.++..+||++||-|.
T Consensus 330 ~~~~-~~~~~v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 330 KELL-GEGTVIVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred HHHh-CCCcEEEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 1111 01101100011223778889999999999764
No 283
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=67.21 E-value=5.4 Score=36.36 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=28.2
Q ss_pred EEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce
Q 011618 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (481)
Q Consensus 327 v~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 369 (481)
+|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999999864 1122358999999766
No 284
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=67.11 E-value=11 Score=38.28 Aligned_cols=106 Identities=24% Similarity=0.291 Sum_probs=57.8
Q ss_pred CCceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcC-CcCCCCC
Q 011618 322 ADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFM-GLREGAS 399 (481)
Q Consensus 322 ~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~-~~~~~~~ 399 (481)
++.+|+|.|| |-.|..+++.|++. | .+++.+|++.- ....... ..........+. ...+..+
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~-----G-------~~V~~~~r~~~---~~~~~~~-~~~~~~~~~~~~~Dl~~~~~ 66 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLEL-----G-------AEVYGYSLDPP---TSPNLFE-LLNLAKKIEDHFGDIRDAAK 66 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHC-----C-------CEEEEEeCCCc---cchhHHH-HHhhcCCceEEEccCCCHHH
Confidence 4589999997 77888888777753 4 36777776521 1011100 000000000000 0123346
Q ss_pred HHHHhcccCCcEEEeecCCCCC----------------CCHHHHHHhhhcCC-CCCEEEecC
Q 011618 400 LLEVVRKVKPHVLLGLSGVGGV----------------FNEEVLKAMRESDS-VKPAIFAMS 444 (481)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~~-erPIIFaLS 444 (481)
+.++++..+||++|=+.+.+.. .+..+++++.+ .+ .+.+||.=|
T Consensus 67 ~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~-~~~~~~iv~~SS 127 (349)
T TIGR02622 67 LRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRA-IGSVKAVVNVTS 127 (349)
T ss_pred HHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHh-cCCCCEEEEEec
Confidence 8888988899999977764321 13455666643 33 457888644
No 285
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=66.90 E-value=16 Score=35.30 Aligned_cols=59 Identities=19% Similarity=0.422 Sum_probs=41.2
Q ss_pred eEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
||+|.|| |-.|..+++.+.+. | .+++.+++. ..++ .+..++.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-----g-------~~v~~~~r~------~~d~-----------------~~~~~~~~~ 45 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-----G-------RVVVALTSS------QLDL-----------------TDPEALERL 45 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-----C-------CEEEEeCCc------ccCC-----------------CCHHHHHHH
Confidence 6899997 98888888887652 4 357777763 1111 122458888
Q ss_pred hcccCCcEEEeecCC
Q 011618 404 VRKVKPHVLLGLSGV 418 (481)
Q Consensus 404 V~~vkptvLIG~S~~ 418 (481)
++..+||++|=+.+.
T Consensus 46 ~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 46 LRAIRPDAVVNTAAY 60 (287)
T ss_pred HHhCCCCEEEECCcc
Confidence 998899999987764
No 286
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=66.69 E-value=5.3 Score=40.71 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=25.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
.+|+|+|||.||+..|-.|...- +.|. ++.++|+
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~ 37 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEA 37 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeC
Confidence 67999999999999998887530 1253 4666776
No 287
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.49 E-value=5.9 Score=41.77 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=21.5
Q ss_pred CCCceEEEeCccHHHHHHHHHHHHH
Q 011618 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
|++.+++|+|+|.+|.++|+.|...
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~ 27 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKL 27 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC
Confidence 4458999999999999999988864
No 288
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.32 E-value=5.7 Score=39.71 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=26.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+||.|+|+|..|.+||..+..+ |. +++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 6899999999999999988653 43 58888864
No 289
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=66.26 E-value=5.5 Score=43.77 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=26.2
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+.+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3799999999999999987754 353 58889864
No 290
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=66.23 E-value=6.3 Score=41.28 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=27.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 369 (481)
.||||+|||.||+..|..|... |- .-+|.++|++.-
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCc
Confidence 3899999999999999987653 21 136889988753
No 291
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=66.06 E-value=5.9 Score=31.72 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=23.3
Q ss_pred EeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce
Q 011618 328 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (481)
Q Consensus 328 ~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 369 (481)
|+|||.+|+..|..|.+. | .+|.+++++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 789999999999988753 3 48999998643
No 292
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=65.97 E-value=4.7 Score=41.18 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=34.2
Q ss_pred CCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeec
Q 011618 318 LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (481)
Q Consensus 318 l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~ 372 (481)
|+-|++++|+|+|.|..|.-+++.|... |. .+|.++|-+-+=.+
T Consensus 25 lekl~~~~V~VvGiGGVGSw~veALaRs-----Gi------g~itlID~D~v~vT 68 (263)
T COG1179 25 LEKLKQAHVCVVGIGGVGSWAVEALARS-----GI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHHHhhCcEEEEecCchhHHHHHHHHHc-----CC------CeEEEEeccccccc
Confidence 4446669999999999998888777654 54 68999999866443
No 293
>PRK07236 hypothetical protein; Provisional
Probab=65.90 E-value=5.7 Score=40.91 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.+|+|+|||.||+..|..|...
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~ 28 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRA 28 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhC
Confidence 7999999999999999988764
No 294
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=65.89 E-value=5 Score=41.01 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=22.6
Q ss_pred EEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
|+|+|||.||+.+|..+.. .|+ ++.++|++
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~ 31 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPH 31 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccC
Confidence 7999999999999977653 343 56667754
No 295
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=65.86 E-value=5.7 Score=42.42 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=26.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~-----~G-------~~V~vie~~ 165 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAK-----AG-------HSVTVFEAL 165 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 899999999999999988864 35 368888874
No 296
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=65.68 E-value=3.7 Score=41.82 Aligned_cols=32 Identities=31% Similarity=0.700 Sum_probs=26.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
..+-|+|||-.|.|||+....+ |+ ++|++|++
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4688999999999999987654 65 69999984
No 297
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=65.58 E-value=4.8 Score=41.44 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.+|+|+|||.||+..|-.|...
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~ 40 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDS 40 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcC
Confidence 6899999999999999988654
No 298
>PRK06475 salicylate hydroxylase; Provisional
Probab=65.56 E-value=5.1 Score=41.56 Aligned_cols=21 Identities=29% Similarity=0.367 Sum_probs=18.8
Q ss_pred ceEEEeCccHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (481)
+||+|+|||.||+..|-.|..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 799999999999999988754
No 299
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=65.42 E-value=5.7 Score=41.50 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=28.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceee
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~ 371 (481)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+-
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~G 39 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEPG 39 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCCC
Confidence 4699999999999999998765 43 577888865543
No 300
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=65.29 E-value=5.7 Score=38.10 Aligned_cols=32 Identities=38% Similarity=0.581 Sum_probs=23.9
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
.|+|+|||.||+..|..|.+ .|+ ++.++|+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccC
Confidence 38999999999999987753 453 466777653
No 301
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=65.20 E-value=4.8 Score=42.46 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=24.6
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
..||||+|+|.||+..|+.|.. . .-+|.++|.+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~-----~-------~~~ItlI~~~ 42 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDP-----K-------KYNITVISPR 42 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCc-----C-------CCeEEEEcCC
Confidence 3799999999999998876621 1 1358888864
No 302
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=65.15 E-value=26 Score=37.25 Aligned_cols=97 Identities=13% Similarity=0.222 Sum_probs=52.3
Q ss_pred CCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhcc------ccccCCcCCcC
Q 011618 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF------AKDPGDFMGLR 395 (481)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~f------A~~~~~~~~~~ 395 (481)
++.|++|+|...-..++++.|.+. |+.. ..+ ++... .+..++.+ .....+.-...
T Consensus 298 ~gk~v~i~~~~~~~~~l~~~L~e~-----G~~v----~~v--------~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~ 358 (428)
T cd01965 298 GGKRVAIAGDPDLLLGLSRFLLEM-----GAEP----VAA--------VTGTD--NPPFEKRMELLASLEGIPAEVVFVG 358 (428)
T ss_pred cCCEEEEEcChHHHHHHHHHHHHc-----CCcc----eEE--------EEcCC--CchhHHHHHHhhhhcCCCceEEECC
Confidence 349999999999999999888764 4422 111 11111 11111111 00000000011
Q ss_pred CCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
+...+++.++..|||++||-|- .+.+-+.+ ..|.| ..|.|..
T Consensus 359 d~~el~~~i~~~~pdliig~~~-----~~~~a~~~-----~ip~i-~~~~P~~ 400 (428)
T cd01965 359 DLWDLESLAKEEPVDLLIGNSH-----GRYLARDL-----GIPLV-RVGFPIF 400 (428)
T ss_pred CHHHHHHHhhccCCCEEEECch-----hHHHHHhc-----CCCEE-EecCCch
Confidence 3345888899999999999773 23333333 57775 4666653
No 303
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=64.86 E-value=6 Score=44.51 Aligned_cols=140 Identities=13% Similarity=0.176 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHhCCc-eEEEeecCCCchHHHHHHHHhhc------CCccccCcchhHHHHHHHHHHHHH------HhCCC
Q 011618 251 IVDEFMEAVHARWPK-AIVQFEDFQMKWAFETLERYRKR------FCMFNDDIQGTAGVALAGLLGTVR------AQGLS 317 (481)
Q Consensus 251 ~vdefv~av~~~~P~-~~IqfEDf~~~naf~iL~ryr~~------~~~FNDDiQGTaaV~LAgll~Alr------~~g~~ 317 (481)
..+ +.+.+++.-.+ .+|-.=..+...-.+++++.... .|-+-|=++ ..+.+| +.|.+
T Consensus 166 ~~~-i~~~v~~~~~~~iiiAips~~~~~~~~i~~~l~~~~~~v~~lP~~~~l~~---------~~~~lreI~ieDLLgR~ 235 (588)
T COG1086 166 RIE-IERVVEELGIQLILIAIPSASQEERRRILLRLARTGIAVRILPQLTDLKD---------LNGQLREIEIEDLLGRP 235 (588)
T ss_pred hhH-HHHHHHHcCCceEEEecCCCCHHHHHHHHHHHHhcCCcEEecCcHHHHHH---------hccccccCCHHHHhCCC
Confidence 344 55555555554 57777788888888888888753 344444222 122222 11222
Q ss_pred C---------CCCCCceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccc
Q 011618 318 L---------TDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD 387 (481)
Q Consensus 318 l---------~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~ 387 (481)
. ..|++++|+|-|| ||.|-.++++|++.-. ++|.++|++ ..++....++|.+.
T Consensus 236 pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p-----------~~i~l~~~~------E~~~~~i~~el~~~ 298 (588)
T COG1086 236 PVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNP-----------KEIILFSRD------EYKLYLIDMELREK 298 (588)
T ss_pred CCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCC-----------CEEEEecCc------hHHHHHHHHHHHhh
Confidence 1 1245599999998 6899999999887522 689998874 11233333444432
Q ss_pred cCC------cCCcCCCCCHHHHhcccCCcEEEeecC
Q 011618 388 PGD------FMGLREGASLLEVVRKVKPHVLLGLSG 417 (481)
Q Consensus 388 ~~~------~~~~~~~~~L~e~V~~vkptvLIG~S~ 417 (481)
-+. .....+...+.+++++.|||+++=+.+
T Consensus 299 ~~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 299 FPELKLRFYIGDVRDRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred CCCcceEEEecccccHHHHHHHHhcCCCceEEEhhh
Confidence 110 001234567999999999999997665
No 304
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=64.70 E-value=6.3 Score=46.63 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=31.1
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc----ceeecC
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD----GLITKE 373 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~----GLi~~~ 373 (481)
+.||+|+|||.||+..|..|... |. ++.++|+. |++.-+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~yG 348 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRYG 348 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEcc
Confidence 38999999999999999998753 53 58888875 666543
No 305
>PRK07589 ornithine cyclodeaminase; Validated
Probab=64.31 E-value=21 Score=37.60 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=61.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
.++.|+|+|.-+..-++.++... . .++|+++|+. .. ....+...+.+..-+. ....+++|+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr----~------i~~V~v~~r~----~~--~a~~~~~~~~~~~~~v---~~~~~~~~a 190 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALL----G------IEEIRLYDID----PA--ATAKLARNLAGPGLRI---VACRSVAEA 190 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhC----C------ceEEEEEeCC----HH--HHHHHHHHHHhcCCcE---EEeCCHHHH
Confidence 58999999998877776666531 2 2678887762 11 1222222222111011 124679999
Q ss_pred hcccCCcEEEeecCCC---CCCCHHHHHHhhhcCCCCCEEEec-CCCCCCCCCCCCHHH
Q 011618 404 VRKVKPHVLLGLSGVG---GVFNEEVLKAMRESDSVKPAIFAM-SNPTMNGLFSCCVTT 458 (481)
Q Consensus 404 V~~vkptvLIG~S~~~---g~Ft~evv~~Ma~~~~erPIIFaL-SNPt~~aE~~~t~ed 458 (481)
|+. .||++.+++.. -+|..++++.= --|-++ |+--.+.| +.++-
T Consensus 191 v~~--ADIIvtaT~S~~~~Pvl~~~~lkpG-------~hV~aIGs~~p~~~E--ld~~~ 238 (346)
T PRK07589 191 VEG--ADIITTVTADKTNATILTDDMVEPG-------MHINAVGGDCPGKTE--LHPDI 238 (346)
T ss_pred Hhc--CCEEEEecCCCCCCceecHHHcCCC-------cEEEecCCCCCCccc--CCHHH
Confidence 999 99999877532 45888888531 134444 33334677 66653
No 306
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=64.16 E-value=6 Score=42.11 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=26.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+|+|+|||.||+..|..+.. .| .++.++|+.
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 799999999999999887753 34 368888875
No 307
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=64.13 E-value=6.9 Score=40.47 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=27.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
..|+|+|||.+|+.+|..|... ..| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~---~~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQER---YPG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHh---CCC-------CeEEEEeCC
Confidence 4699999999999999888764 114 378999986
No 308
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=64.05 E-value=7.1 Score=43.22 Aligned_cols=22 Identities=32% Similarity=0.672 Sum_probs=17.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.||+|+|||.+|+..|+.|.+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~ 23 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE 23 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT
T ss_pred CEEEEECccHHHHHHHHHHHHC
Confidence 6999999999999999998753
No 309
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=63.98 E-value=4.6 Score=41.08 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=26.9
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 369 (481)
+|||+|+|.||+..|+.+..... ...+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~---------~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPL---------PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCC---------CCCEEEEECCCCC
Confidence 59999999999999988754211 1247999997654
No 310
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=63.87 E-value=6.4 Score=41.77 Aligned_cols=38 Identities=32% Similarity=0.502 Sum_probs=31.2
Q ss_pred CCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce
Q 011618 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (481)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 369 (481)
|++|=||++|||..|.-++++|+..++ ++|-++|-+-+
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~-----------qKi~iVDfdqV 109 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGV-----------QKIRIVDFDQV 109 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcC-----------ceEEEechhhc
Confidence 344999999999999999999987655 57888886644
No 311
>PLN02676 polyamine oxidase
Probab=63.78 E-value=13 Score=40.39 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.+|+|+|||.+|++.|..|...
T Consensus 27 ~~v~IIGaG~sGL~aa~~L~~~ 48 (487)
T PLN02676 27 PSVIIVGAGMSGISAAKTLSEA 48 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHc
Confidence 6899999999999999988753
No 312
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=63.70 E-value=57 Score=34.20 Aligned_cols=154 Identities=12% Similarity=0.109 Sum_probs=80.0
Q ss_pred cchhhHHHHHHHhhcccCC--------C-----ccccccCChhhHHHHHhcCCCCCeeEEE-EecCceeeccCCCCCccc
Q 011618 129 YTPTVGLVCQNYSGLFRRP--------R-----GMYFSAKDKGEMMSMIYNWPAQQVDMIV-LTDGSRILGLGDLGVQGI 194 (481)
Q Consensus 129 YTPtVg~ac~~~s~~~rrp--------r-----Glyis~~d~g~i~~~l~nwp~~~v~viV-VTDG~rILGLGDlG~~Gm 194 (481)
|..+...+.+.+-..+..+ + |.|-...|...+.++|... ++++.. .+.|+++=-+=..+...+
T Consensus 134 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~---Gi~~~~~~~~~~~~~~i~~~~~A~~ 210 (406)
T cd01967 134 QSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEEL---GIRVNATFTGDGTVDELRRAHRAKL 210 (406)
T ss_pred ccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHc---CCEEEEEeCCCCCHHHHhhCccCCE
Confidence 4455555666655444321 1 4454455777888888864 567655 445666555555554444
Q ss_pred cccch-hhhhh-----hhhcCCCCCceecEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEE
Q 011618 195 GIPIG-KLDVY-----VAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIV 268 (481)
Q Consensus 195 ~I~iG-Kl~LY-----~a~gGI~P~~~LPV~LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~I 268 (481)
-|.++ ....+ ..=.||. .+. . + ++|+ +-.++|++.+-+.+..
T Consensus 211 niv~~~~~~~~~a~~L~~r~GiP------~~~-~---------~--p~G~-----------~~t~~~l~~l~~~lg~--- 258 (406)
T cd01967 211 NLVHCSRSMNYLAREMEERYGIP------YME-V---------N--FYGF-----------EDTSESLRKIAKFFGD--- 258 (406)
T ss_pred EEEEChHHHHHHHHHHHHhhCCC------EEE-e---------c--CCcH-----------HHHHHHHHHHHHHhCC---
Confidence 44332 12211 1123444 210 0 0 1121 2367888888777643
Q ss_pred EeecCCCchHHHHHHHHhhcCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHH
Q 011618 269 QFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 269 qfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~ 344 (481)
...+-+.+++.+.++ ..++......+.. .|+.|++.+.-..++++++.+
T Consensus 259 ------~~~~~~~i~~~~~~~------------------~~~l~~~~~~l~g---krv~I~~~~~~~~~~~~~l~e 307 (406)
T cd01967 259 ------EEKAEEVIAEEEARI------------------KPELEKYRERLKG---KKVIIYTGGARSWHVIAALRE 307 (406)
T ss_pred ------HHHHHHHHHHHHHHH------------------HHHHHHHHHhccC---CEEEEEccCcchHHHHHHHHH
Confidence 124555666665542 2222223334444 899998887777777755443
No 313
>PRK12831 putative oxidoreductase; Provisional
Probab=63.69 E-value=6.7 Score=42.27 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=26.8
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+.+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~-----G~-------~V~v~e~~ 172 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKM-----GY-------DVTIFEAL 172 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 38999999999999999888763 43 67888863
No 314
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=63.60 E-value=37 Score=37.04 Aligned_cols=71 Identities=6% Similarity=0.096 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhCCceEEEeecCCCchHHHHHHHHhhcCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeC
Q 011618 251 IVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVG 330 (481)
Q Consensus 251 ~vdefv~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~G 330 (481)
-.++|++.+.+.+-.-.+. |+. ..++-+++++.+.+ +..++.-....|.. .|++|+|
T Consensus 275 ~T~~~l~~la~~~~~~~~~-~~~-~~~~e~~i~~e~~~------------------~~~~l~~~~~~l~G---k~vaI~~ 331 (475)
T PRK14478 275 DTSDSLRQIARLLVERGAD-AEL-VERTEALIAEEEAK------------------AWAALEPYRPRLEG---KRVLLYT 331 (475)
T ss_pred HHHHHHHHHHHHHhhcCCC-hHH-HHHHHHHHHHHHHH------------------HHHHHHHHHHHhCC---CEEEEEc
Confidence 3677888777776110010 000 12344455555444 24444444444555 8999998
Q ss_pred ccHHHHHHHHHHHH
Q 011618 331 AGSAGLGVLKMAVQ 344 (481)
Q Consensus 331 AGsAg~GiA~ll~~ 344 (481)
.+.-..++++.+.+
T Consensus 332 ~~~~~~~la~~l~E 345 (475)
T PRK14478 332 GGVKSWSVVKALQE 345 (475)
T ss_pred CCchHHHHHHHHHH
Confidence 88888888887654
No 315
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=63.50 E-value=21 Score=35.61 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=25.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.||.|+|+|..|..+|..+.. .|. +++.+|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AGY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CCC-------eEEEEcCC
Confidence 489999999999999999865 342 56777764
No 316
>PRK06753 hypothetical protein; Provisional
Probab=63.37 E-value=6.4 Score=39.95 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=18.4
Q ss_pred eEEEeCccHHHHHHHHHHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (481)
+|+|+|||.||+..|..|...
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~ 22 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ 22 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC
Confidence 799999999999999888653
No 317
>PLN02852 ferredoxin-NADP+ reductase
Probab=63.27 E-value=9.5 Score=41.99 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=30.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc----ceeec
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD----GLITK 372 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~----GLi~~ 372 (481)
.||+|+|||.||+..|..|... ..| -+|.++|+. ||+..
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~---~~g-------~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKA---HDG-------ARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhh---CCC-------CeEEEEecCCCCcceEee
Confidence 8999999999999999988753 124 368899886 55543
No 318
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=63.18 E-value=7.2 Score=39.92 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=26.9
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.++|+|+|+|.||+.+|..+.+ .| .++.++|+.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 3799999999999999888764 34 368888876
No 319
>PRK06184 hypothetical protein; Provisional
Probab=63.17 E-value=6.8 Score=42.11 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=19.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
..|+|+|||.||+..|-.|...
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~ 25 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARR 25 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHC
Confidence 7899999999999999887654
No 320
>PRK11445 putative oxidoreductase; Provisional
Probab=63.16 E-value=6.8 Score=40.07 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=18.2
Q ss_pred eEEEeCccHHHHHHHHHHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (481)
.|+|+|||.||+..|..|...
T Consensus 3 dV~IvGaGpaGl~~A~~La~~ 23 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK 23 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc
Confidence 589999999999999887653
No 321
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=62.90 E-value=6.9 Score=42.23 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=28.0
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+||||+|+|-+|+..|..+.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~------~----~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL------P----DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC------C----CCcEEEEeCC
Confidence 479999999999999999887653 0 1368899985
No 322
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=62.89 E-value=6.3 Score=40.13 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=24.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 479999999999999987764 353 46666654
No 323
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=62.85 E-value=24 Score=33.37 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=89.6
Q ss_pred ccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecC--ceeeccCCCCCc--cccccchhhhhhhhhcCCCCCceecEE
Q 011618 144 FRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG--SRILGLGDLGVQ--GIGIPIGKLDVYVAAAGINPQRILPVM 219 (481)
Q Consensus 144 ~rrprGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG--~rILGLGDlG~~--Gm~I~iGKl~LY~a~gGI~P~~~LPV~ 219 (481)
-+++.|+-++..|.....+.+..+-..+|.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|+
T Consensus 53 ~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v~ 126 (257)
T PF13407_consen 53 SQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKVL 126 (257)
T ss_dssp HTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEEE
T ss_pred HhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceEE
Confidence 4668999999999887777787776678888877555 111222223332 67777777777666655 4445
Q ss_pred eeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhCCce-EEE---eecCCCchHHHHHHHHhhcCCccccC
Q 011618 220 LDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQ---FEDFQMKWAFETLERYRKRFCMFNDD 295 (481)
Q Consensus 220 LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~-~Iq---fEDf~~~naf~iL~ryr~~~~~FNDD 295 (481)
+=.|.-+ .....+..+-|.++++. +|++ .+. ..++....+.+..+++-...+ -|=
T Consensus 127 ~~~~~~~------------------~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~~ 185 (257)
T PF13407_consen 127 ILSGSPG------------------NPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANP--VDA 185 (257)
T ss_dssp EEESSTT------------------SHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTT--EEE
T ss_pred eccCCCC------------------chHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCC--ceE
Confidence 4443211 12223457788888888 8887 443 347888888877666655432 111
Q ss_pred cchhHHHHHHHHHHHHHHhCC
Q 011618 296 IQGTAGVALAGLLGTVRAQGL 316 (481)
Q Consensus 296 iQGTaaV~LAgll~Alr~~g~ 316 (481)
|=.+....+-|++.|++..|+
T Consensus 186 i~~~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 186 IIACNDGMALGAAQALQQAGR 206 (257)
T ss_dssp EEESSHHHHHHHHHHHHHTTC
T ss_pred EEeCCChHHHHHHHHHHHcCC
Confidence 112223334478889999887
No 324
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=62.67 E-value=6.9 Score=44.11 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=26.6
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+.||+|+|||.||+..|..+... |. ++.++|+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~-----G~-------~Vtv~e~~ 225 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRK-----GH-------DVTIFDAN 225 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 37999999999999999888653 42 58888865
No 325
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=62.58 E-value=23 Score=36.39 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=23.0
Q ss_pred CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecC-CCCC
Q 011618 408 KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS-NPTM 448 (481)
Q Consensus 408 kptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLS-NPt~ 448 (481)
+-|++||+|..+. |++++..+.......--+++++ ||.+
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~IaIT~~~~s 166 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATTIALSCNPDS 166 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4699999997443 6778777733222223334555 4543
No 326
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=62.55 E-value=6.5 Score=40.61 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=31.7
Q ss_pred CCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
++|.. -+|+|+|+|..|.-+|+-|+.+++ ++|.++|.+
T Consensus 22 ~KL~~---SrVLVVG~GGLGsEVAKnLaLAGV-----------GsItIvDdD 59 (287)
T PTZ00245 22 QQLMH---TSVALHGVAGAAAEAAKNLVLAGV-----------RAVAVADEG 59 (287)
T ss_pred HHHhh---CeEEEECCCchHHHHHHHHHHcCC-----------CeEEEecCC
Confidence 34455 999999999999999999988765 689999876
No 327
>PRK09126 hypothetical protein; Provisional
Probab=62.41 E-value=6.4 Score=40.23 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=19.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
..|+|+|||.||+..|..|...
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~ 25 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGS 25 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhC
Confidence 6799999999999999888653
No 328
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=62.33 E-value=4.4 Score=40.45 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=25.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
-.|+|+|||.||+..|..+.. .|+ ++.+++++.
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~-----~G~-------~V~vlEk~~ 54 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAK-----NGL-------KVCVLERSL 54 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 789999999999999987654 353 577777764
No 329
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=62.10 E-value=7.1 Score=39.56 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=27.0
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccee
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 370 (481)
.|+|+|||.+|+.+|-.|.+ .| .++.++|+....
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~~ 35 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDLP 35 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCCC
Confidence 48999999999999988764 35 368889986543
No 330
>PRK07045 putative monooxygenase; Reviewed
Probab=61.93 E-value=7.2 Score=40.02 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
-+|+|+|||.||+..|-.|...
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~ 27 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGAR 27 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhc
Confidence 5799999999999999887654
No 331
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=61.75 E-value=42 Score=36.01 Aligned_cols=111 Identities=11% Similarity=0.187 Sum_probs=71.9
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC--C---C--CCChhhhcccc--ccCCcCC
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--R---K--NLDPAAAPFAK--DPGDFMG 393 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~--r---~--~l~~~k~~fA~--~~~~~~~ 393 (481)
..||.++|+|.=|..||+++-.--. +.+.-+.+=++|.++.. ..+ + + +-+++...|-. +.++ +
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~---~~~~f~~~Vrmwv~ee~---i~~~~~~L~eiIN~~heN~KYlpg~~lP~--N 92 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVK---EFPIFDPQVRMWVFEEE---INGEAEKLTEIINSRHENVKYLPGIKLPE--N 92 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhh---hccccCceeeEEEeccc---cCChhHHHHHHhccccccccccCCccCCC--C
Confidence 3799999999999999999987543 34445556689998764 222 1 1 11112222322 1111 0
Q ss_pred cCCCCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCC
Q 011618 394 LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (481)
Q Consensus 394 ~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSN 445 (481)
..-..+|.||++. +|+||=+ .|--|+..+.+.+.....++..-..|+=
T Consensus 93 vvAv~dl~ea~~d--ADilvf~--vPhQf~~~ic~~l~g~vk~~~~aISL~K 140 (372)
T KOG2711|consen 93 VVAVPDLVEAAKD--ADILVFV--VPHQFIPRICEQLKGYVKPGATAISLIK 140 (372)
T ss_pred eEecchHHHHhcc--CCEEEEe--CChhhHHHHHHHHhcccCCCCeEEEeec
Confidence 1124679999999 9999843 4788999999999775566666655553
No 332
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=61.49 E-value=7.1 Score=46.70 Aligned_cols=33 Identities=30% Similarity=0.625 Sum_probs=27.1
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+.||+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar-----~G~-------~VtV~Ek~ 571 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLAR-----AGH-------PVTVFERE 571 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecc
Confidence 4899999999999999999865 353 58888865
No 333
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=61.43 E-value=13 Score=38.09 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=68.2
Q ss_pred EeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChhhhccccccCCcCCcCCCCCHHHHhcc
Q 011618 328 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRK 406 (481)
Q Consensus 328 ~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~ 406 (481)
|+|||..|..+|.+|+. .|+- ..|.|+|.+-=..++. -+|.+....+.++. . -..+-.+.+++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l~-----~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~-~-----i~~~~~~~~~d 64 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGIA-----DEIVLIDINKDKAEGEAMDLQHAASFLPTPK-K-----IRSGDYSDCKD 64 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCCChhhHHHHHHHHhhcccCCCe-E-----EecCCHHHHCC
Confidence 58999999999998764 2442 5799999842111111 13433332222211 1 11123466777
Q ss_pred cCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhcc
Q 011618 407 VKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYL 463 (481)
Q Consensus 407 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt 463 (481)
.|++|=+.+.| |- .=+++++.+.+ ++..-+|+-.|||.. +...-+.+++
T Consensus 65 --aDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~-~~p~~~vivvsNP~d-----~~t~~~~~~s 127 (299)
T TIGR01771 65 --ADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVK-SGFDGIFLVATNPVD-----ILTYVAWKLS 127 (299)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEeCCHHH-----HHHHHHHHHh
Confidence 89998665553 31 12356677754 889999999999987 5555666665
No 334
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=61.30 E-value=4.7 Score=34.58 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=26.7
Q ss_pred CCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
|++.++||+|+|..|..=+++|+++ | .++.++...-
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 4559999999999999888887764 3 3788777753
No 335
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=61.23 E-value=24 Score=38.36 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=24.3
Q ss_pred ccccccCChhhHHHHHhcCCCCCeeEEEEecCcee
Q 011618 149 GMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRI 183 (481)
Q Consensus 149 Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rI 183 (481)
|..++..|...+.++|+.. ++++++++|=+..
T Consensus 176 g~~~~~~D~~elk~lL~~~---Gl~v~~lpd~s~~ 207 (455)
T PRK14476 176 GSHLTPGDIEELREIIEAF---GLEPIILPDLSGS 207 (455)
T ss_pred CCCCCcccHHHHHHHHHHc---CCceEEecCcccc
Confidence 4456778888899999875 7889998875533
No 336
>PRK08219 short chain dehydrogenase; Provisional
Probab=60.80 E-value=23 Score=32.74 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=39.5
Q ss_pred ceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCC-cCCCCCHH
Q 011618 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMG-LREGASLL 401 (481)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~-~~~~~~L~ 401 (481)
.+++|.|| |..|..+++.|++. .+++.++++. +.+......+.. ..-+.. ..+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------------~~V~~~~r~~------~~~~~~~~~~~~-~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------------HTLLLGGRPA------ERLDELAAELPG-ATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------------CCEEEEeCCH------HHHHHHHHHhcc-ceEEecCCCCHHHHH
Confidence 57899997 55666666655432 2588887741 111111111100 000000 11234577
Q ss_pred HHhccc-CCcEEEeecCCC
Q 011618 402 EVVRKV-KPHVLLGLSGVG 419 (481)
Q Consensus 402 e~V~~v-kptvLIG~S~~~ 419 (481)
++++.+ ++|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 777654 689999887754
No 337
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=60.76 E-value=7.3 Score=41.06 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=27.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
-.|||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 469999999999999988765 35 4799999863
No 338
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=60.60 E-value=8.4 Score=38.59 Aligned_cols=32 Identities=47% Similarity=0.776 Sum_probs=26.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.||.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5799999999999999998764 4 268888863
No 339
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=60.33 E-value=8.1 Score=39.09 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=27.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 369 (481)
..|+|+|||.+|+.+|-.|.+. | .++.++|+...
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~~ 37 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFMP 37 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEecccC
Confidence 5699999999999999887653 4 37999998643
No 340
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=60.26 E-value=6.6 Score=40.37 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=25.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~ 38 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGR 38 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCC
Confidence 579999999999999987654 454 47777764
No 341
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.24 E-value=8.5 Score=38.70 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=25.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
+||.|+|+|..|.+||..+... |. +++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEEC
Confidence 5799999999999999988653 43 5888885
No 342
>PRK06199 ornithine cyclodeaminase; Validated
Probab=60.20 E-value=26 Score=37.25 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=52.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
.++.|+|+|.-+...++.++... ..+ ++|+++|+. . +....+.+.+.+.-+.+.......+.+|+
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~---~~i------~~V~v~~r~----~--~~a~~f~~~~~~~~~~~~~v~~~~s~~ea 220 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVC---PGI------DTIKIKGRG----Q--KSLDSFATWVAETYPQITNVEVVDSIEEV 220 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhc---CCc------cEEEEECCC----H--HHHHHHHHHHHHhcCCCceEEEeCCHHHH
Confidence 68999999998887777666532 122 578887773 1 11222222332211100001124689999
Q ss_pred hcccCCcEEEeecCC-------CCCCCHHHHH
Q 011618 404 VRKVKPHVLLGLSGV-------GGVFNEEVLK 428 (481)
Q Consensus 404 V~~vkptvLIG~S~~-------~g~Ft~evv~ 428 (481)
|+. +||++-+.+. ..+|..++++
T Consensus 221 v~~--ADIVvtaT~s~~~~~s~~Pv~~~~~lk 250 (379)
T PRK06199 221 VRG--SDIVTYCNSGETGDPSTYPYVKREWVK 250 (379)
T ss_pred HcC--CCEEEEccCCCCCCCCcCcEecHHHcC
Confidence 988 9999976431 1678888775
No 343
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=60.08 E-value=68 Score=34.28 Aligned_cols=157 Identities=13% Similarity=0.189 Sum_probs=88.2
Q ss_pred ccchhhHHHHHHHhhcccCCC------------ccccc-----cCChhhHHHHHhcCCCCCeeEEEEec-CceeeccCCC
Q 011618 128 IYTPTVGLVCQNYSGLFRRPR------------GMYFS-----AKDKGEMMSMIYNWPAQQVDMIVLTD-GSRILGLGDL 189 (481)
Q Consensus 128 iYTPtVg~ac~~~s~~~rrpr------------Glyis-----~~d~g~i~~~l~nwp~~~v~viVVTD-G~rILGLGDl 189 (481)
-|+.+...++..+-..+..++ |.|.. ..|...+.++|... ++++..+.- |+.+=-+-..
T Consensus 135 ~~~~G~~~a~~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~---Gi~v~~~~~~~~~~~ei~~~ 211 (426)
T cd01972 135 HWRSGFDAAFHGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNEL---GLRVNAIIAGGCSVEELERA 211 (426)
T ss_pred cHhHHHHHHHHHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHc---CCeEEEEeCCCCCHHHHHhc
Confidence 355566666666655553321 55543 25567788888864 677765554 4776666666
Q ss_pred CCccccccchh-hhhhhh-----hcCCCCCceecEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhC
Q 011618 190 GVQGIGIPIGK-LDVYVA-----AAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW 263 (481)
Q Consensus 190 G~~Gm~I~iGK-l~LY~a-----~gGI~P~~~LPV~LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~ 263 (481)
+-...-|.++. ..++.+ =-||. .+.+-+-+|- +-.++|++.+.+.+
T Consensus 212 ~~A~lniv~~~~~g~~~a~~Lee~~GiP---~~~~~~P~G~-------------------------~~T~~~l~~ia~~~ 263 (426)
T cd01972 212 SEAAANVTLCLDLGYYLGAALEQRFGVP---EIKAPQPYGI-------------------------EATDKWLREIAKVL 263 (426)
T ss_pred ccCCEEEEEChhHHHHHHHHHHHHhCCC---eEecCCccCH-------------------------HHHHHHHHHHHHHh
Confidence 66666665553 222221 12444 2211111221 23688888888766
Q ss_pred CceEEEeecCCCchHHHHHHHHhhcCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHH
Q 011618 264 PKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAV 343 (481)
Q Consensus 264 P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~ 343 (481)
- .| ..+-+.+++.+.++ ..++.-....|+. .|++++|.+.-..++++.+.
T Consensus 264 g-----~~----~~~e~~i~~e~~~~------------------~~~l~~~~~~l~G---k~~~i~~~~~~~~~~~~~l~ 313 (426)
T cd01972 264 G-----ME----AEAEAVIEREHERV------------------APEIEELRKALKG---KKAIVETGAAYGHLLIAVLR 313 (426)
T ss_pred C-----Cc----HHHHHHHHHHHHHH------------------HHHHHHHHHHhCC---CEEEEEeCCccHHHHHHHHH
Confidence 3 11 13555666665442 2223333334444 89999998888888888876
Q ss_pred HH
Q 011618 344 QA 345 (481)
Q Consensus 344 ~~ 345 (481)
+.
T Consensus 314 el 315 (426)
T cd01972 314 EL 315 (426)
T ss_pred Hc
Confidence 54
No 344
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=59.99 E-value=20 Score=35.78 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=25.0
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
||.|+|+|..|..+|..|... | .+++.+|++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-----g-------~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-----G-------HTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-----C-------CEEEEEECC
Confidence 799999999999999988653 4 257888864
No 345
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=59.96 E-value=7.2 Score=42.21 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=29.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+|+++|+|+.|.-+++.|+..++ ++|.++|.+
T Consensus 21 s~VlliG~gglGsEilKNLvL~GI-----------g~~tIvD~~ 53 (425)
T cd01493 21 AHVCLLNATATGTEILKNLVLPGI-----------GSFTIVDGS 53 (425)
T ss_pred CeEEEEcCcHHHHHHHHHHHHcCC-----------CeEEEECCC
Confidence 899999999999999999987654 689999986
No 346
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=59.67 E-value=8.6 Score=43.91 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=27.3
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+.+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~-----G~-------~V~v~e~~ 463 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKR-----GY-------DVTVFEAL 463 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 48999999999999999988653 53 68889874
No 347
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=59.66 E-value=27 Score=38.30 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=73.0
Q ss_pred ceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChhhhccccccCCcCCcCCCCCHH
Q 011618 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 401 (481)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~k~~fA~~~~~~~~~~~~~~L~ 401 (481)
.||.|+|| |..|..+|-.|+..-+ -|.++.-+ .++.++|.+-=...+. -+|.+...++-+.. ....+-.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v--~g~~~~i~-~eLvliD~~~~~a~G~amDL~daa~~~~~~v------~i~~~~y 171 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEV--FGPDQPIA-LKLLGSERSKQALEGVAMELEDSLYPLLREV------SIGIDPY 171 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccc--ccCCCCcc-cEEEEEcCCcchhHHHHHHHHHhhhhhcCce------EEecCCH
Confidence 69999999 9999999998876422 12111111 4788888742221111 13443332332211 1112335
Q ss_pred HHhcccCCcEEEeecCCC---CC-----------CCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHHHHhccc
Q 011618 402 EVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTTFFFYLM 464 (481)
Q Consensus 402 e~V~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~eda~~wt~ 464 (481)
|..++ .|++|=+.+.| |- .=+++.+.+.+..+...||+-.|||.. ...--+++++.
T Consensus 172 e~~kd--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvD-----v~t~v~~k~sg 241 (444)
T PLN00112 172 EVFQD--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCN-----TNALICLKNAP 241 (444)
T ss_pred HHhCc--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHH-----HHHHHHHHHcC
Confidence 66777 89988665553 31 123455666421478999999999986 55666777764
No 348
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=59.58 E-value=7.1 Score=40.33 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=24.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 469999999999999988754 454 46666654
No 349
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=59.53 E-value=7.7 Score=42.25 Aligned_cols=34 Identities=29% Similarity=0.562 Sum_probs=27.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 369 (481)
-.|||+|+|.+|++||..+.. .|+ ++.++|+..+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d~ 40 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDDL 40 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCCC
Confidence 469999999999999988765 364 5888988643
No 350
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.48 E-value=8.6 Score=41.48 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.0
Q ss_pred CCCCceEEEeCccHHHHHHHHHHHHH
Q 011618 320 DFADQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.|.+.||+|+|+|-+|.++|+.+...
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~ 37 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSEL 37 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHC
Confidence 34458999999999999999998754
No 351
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=59.48 E-value=7.9 Score=41.72 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=18.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
-.|+|+|||.||...|..+...
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~ 61 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKG 61 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhC
Confidence 4699999999999999887643
No 352
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=59.40 E-value=7.5 Score=39.49 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=18.6
Q ss_pred EEEeCccHHHHHHHHHHHHHH
Q 011618 326 IVVVGAGSAGLGVLKMAVQAA 346 (481)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~ 346 (481)
|+|+|||.||+..|..|....
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G 22 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLG 22 (382)
T ss_pred EEEECccHHHHHHHHHHhcCC
Confidence 899999999999999987653
No 353
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=59.26 E-value=8.1 Score=46.22 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=26.9
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+.+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 3799999999999999988864 353 58888875
No 354
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=59.18 E-value=18 Score=31.18 Aligned_cols=95 Identities=20% Similarity=0.168 Sum_probs=55.7
Q ss_pred CccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHhcccCC
Q 011618 330 GAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKP 409 (481)
Q Consensus 330 GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V~~vkp 409 (481)
|.|..|.+++++|...-. .-++ +=..++|+++++... +.....+. ....++.+.++..++
T Consensus 1 G~G~VG~~l~~~l~~~~~-~~~~------~v~~v~~~~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~~~ 60 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQE-RIDL------EVVGVADRSMLISKD-------WAASFPDE------AFTTDLEELIDDPDI 60 (117)
T ss_dssp --SHHHHHHHHHHHHTHH-HCEE------EEEEEEESSEEEETT-------HHHHHTHS------CEESSHHHHHTHTT-
T ss_pred CCCHHHHHHHHHHHhCcc-cCCE------EEEEEEECCchhhhh-------hhhhcccc------cccCCHHHHhcCcCC
Confidence 789999999999987532 1021 346778888554443 11111111 124679999997789
Q ss_pred cEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCCCC
Q 011618 410 HVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNG 450 (481)
Q Consensus 410 tvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~a 450 (481)
|++|=+++ +...++-+.+.+. +...||- +|..+.+
T Consensus 61 dvvVE~t~-~~~~~~~~~~~L~---~G~~VVt--~nk~ala 95 (117)
T PF03447_consen 61 DVVVECTS-SEAVAEYYEKALE---RGKHVVT--ANKGALA 95 (117)
T ss_dssp SEEEE-SS-CHHHHHHHHHHHH---TTCEEEE--S-HHHHH
T ss_pred CEEEECCC-chHHHHHHHHHHH---CCCeEEE--ECHHHhh
Confidence 99999954 5666666666663 3567774 4555433
No 355
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=58.98 E-value=29 Score=35.35 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=18.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.||+|+|||+.|.-+|-.|..+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~ 24 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA 24 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC
Confidence 5899999999999998887653
No 356
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=58.74 E-value=8.1 Score=40.98 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=24.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
-.|+|+|||.||+..|-.+.+ .|+ ++.++|+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~-----~G~-------~V~llEr~ 37 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR-----EGA-------QVLVIERG 37 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEEcC
Confidence 469999999999999988754 454 46666654
No 357
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=58.65 E-value=8 Score=39.00 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=17.4
Q ss_pred EEEeCccHHHHHHHHHHHHH
Q 011618 326 IVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~ 345 (481)
|+|+|||.||+..|..|...
T Consensus 2 ViIvGaG~aGl~~A~~L~~~ 21 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARS 21 (385)
T ss_pred EEEECCCHHHHHHHHHHhcC
Confidence 89999999999999877653
No 358
>PRK07588 hypothetical protein; Provisional
Probab=58.56 E-value=8.6 Score=39.51 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=18.3
Q ss_pred eEEEeCccHHHHHHHHHHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (481)
+|+|+|||.||+..|-.|...
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~ 22 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY 22 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC
Confidence 799999999999999887643
No 359
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=58.56 E-value=8.1 Score=40.93 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=26.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
-.++|+|||+||+..|..+... | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 4699999999999999887653 4 4789999864
No 360
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=58.49 E-value=40 Score=40.00 Aligned_cols=190 Identities=12% Similarity=0.175 Sum_probs=95.8
Q ss_pred CChhhHHHHHhcCCCCCeeEE-EEecCceeeccCCCCCccccccchhhh-hhhh-----hcCCCCCceecEEeeccCCcc
Q 011618 155 KDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLD-VYVA-----AAGINPQRILPVMLDVGTNNQ 227 (481)
Q Consensus 155 ~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~iGKl~-LY~a-----~gGI~P~~~LPV~LDvGTnN~ 227 (481)
.|-..+.++|... +++++ ++|.++.+=-+-..+...+-|.++.-. .+.+ ==||. .+
T Consensus 197 gd~~elk~lL~~~---Gi~v~~~~~g~~t~eei~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP------~~-------- 259 (917)
T PRK14477 197 GDLWGMLPLFDRL---GIRVLSCISGDAKFEELRYAHRAKLNVIICSKSLTNLARKMEKRYGIP------YL-------- 259 (917)
T ss_pred chHHHHHHHHHHc---CCeEEEEcCCCCCHHHHHhcccCCEEEEEcHHHHHHHHHHHHHHhCCC------EE--------
Confidence 3444566666654 56664 556665665555566555555553222 2221 11444 11
Q ss_pred ccccCcccccccccCCChhhhhHhHHHHHHHHHHhCCce--EEEeecCCCchHHHHHHHHhhcCCccccCcchhHHHHHH
Q 011618 228 KLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA--IVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALA 305 (481)
Q Consensus 228 ~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~--~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LA 305 (481)
.. .++|+ +-.|+|++.+.+.+-.- .+.- +.-...+-+.+++.+.+
T Consensus 260 ---~~-~p~Gi-----------~~T~~~L~~ia~~~g~~~~~~~~-~~~~~~~e~~i~~e~~~----------------- 306 (917)
T PRK14477 260 ---EE-SFYGM-----------TDTAKALRDIARELDDAGGGLEK-RVLQDRVEKLIAEEEAK----------------- 306 (917)
T ss_pred ---ec-CccCH-----------HHHHHHHHHHHHHhCCcccCCch-hhhHHHHHHHHHHHHHH-----------------
Confidence 01 12343 24688888888877321 1100 00023455566666654
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhh--hc
Q 011618 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA--AP 383 (481)
Q Consensus 306 gll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k--~~ 383 (481)
+.-++......|+. .|++|+|.+.-..++++.+.+ .|+. +..+-. ...+..+.. +.
T Consensus 307 -~~~~l~~~~~~L~G---Krv~i~~g~~~~~~la~~l~e-----lGme-------vv~~g~------~~~~~~d~~~~~~ 364 (917)
T PRK14477 307 -CRAALAPYRARLEG---KRVVLFTGGVKTWSMVNALRE-----LGVE-------VLAAGT------QNSTLEDFARMKA 364 (917)
T ss_pred -HHHHHHHHHHHccC---CEEEEECCCchHHHHHHHHHH-----CCCE-------EEEEcC------CCCCHHHHHHHHH
Confidence 33444444455555 999999998888888887754 4552 221111 111111111 11
Q ss_pred cccccCCcCCcCCCCCHHHHhcccCCcEEEeec
Q 011618 384 FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS 416 (481)
Q Consensus 384 fA~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S 416 (481)
+..+........+...|++.++..|||++||-|
T Consensus 365 ~~~~~~~vi~~~d~~el~~~i~~~~pDLlig~~ 397 (917)
T PRK14477 365 LMHKDAHIIEDTSTAGLLRVMREKMPDLIVAGG 397 (917)
T ss_pred hcCCCCEEEECCCHHHHHHHHHhcCCCEEEecC
Confidence 111111110011234588899999999999955
No 361
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=58.48 E-value=4.5 Score=44.66 Aligned_cols=46 Identities=26% Similarity=0.285 Sum_probs=30.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeE-----EEEeccceeec
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF-----FLLDKDGLITK 372 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i-----~lvD~~GLi~~ 372 (481)
+||+|+|||-||++.|..|.++.. -++.=||+.++ -..|++|..+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccCceeeeeecCCCCeee
Confidence 589999999999999999987643 23333555432 12455555543
No 362
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=58.45 E-value=8.9 Score=43.02 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=28.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccee
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 370 (481)
..|+|+|||.+|+.+|..|.. .|. ++.++|++..+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCCCc
Confidence 479999999999999998865 353 69999987433
No 363
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=58.27 E-value=14 Score=40.60 Aligned_cols=153 Identities=24% Similarity=0.329 Sum_probs=90.2
Q ss_pred eeeccCcccccccccchhhHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCCccc
Q 011618 115 RVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGI 194 (481)
Q Consensus 115 ~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~rrprGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm 194 (481)
.+..+|...+=.++..|..-+-..+==..|-+...-| ++.|. -|- ++ . .| .||-|-
T Consensus 191 ~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~Y---krvGk------awK-RG--Y--------LL----YGPPGT 246 (457)
T KOG0743|consen 191 SVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFY---KRVGK------AWK-RG--Y--------LL----YGPPGT 246 (457)
T ss_pred ecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHH---HhcCc------chh-cc--c--------ee----eCCCCC
Confidence 4666777777677788876654333222333444444 33332 352 10 1 11 577664
Q ss_pred cccchhhhhhhhhcCCCCCceecEEe-eccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhC-CceEEEeec
Q 011618 195 GIPIGKLDVYVAAAGINPQRILPVML-DVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAIVQFED 272 (481)
Q Consensus 195 ~I~iGKl~LY~a~gGI~P~~~LPV~L-DvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~-P~~~IqfED 272 (481)
||+++-.|.|+-==-...-+.| .|+.| +| ..-+...- ++-+|-+||
T Consensus 247 ----GKSS~IaAmAn~L~ydIydLeLt~v~~n---------------------------~d-Lr~LL~~t~~kSIivIED 294 (457)
T KOG0743|consen 247 ----GKSSFIAAMANYLNYDIYDLELTEVKLD---------------------------SD-LRHLLLATPNKSILLIED 294 (457)
T ss_pred ----CHHHHHHHHHhhcCCceEEeeeccccCc---------------------------HH-HHHHHHhCCCCcEEEEee
Confidence 6999999999865222333444 44322 34 33333344 457999999
Q ss_pred CCCchHHHHHHHHhhcCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc
Q 011618 273 FQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA 331 (481)
Q Consensus 273 f~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GA 331 (481)
| ..++.+=+|-.++-.-|++ .-+-|||+||||++--.-..-.+ .||+|+=.
T Consensus 295 I--Dcs~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~---ERIivFTT 345 (457)
T KOG0743|consen 295 I--DCSFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGD---ERIIVFTT 345 (457)
T ss_pred c--ccccccccccccccccccC---CcceeehHHhhhhhccccccCCC---ceEEEEec
Confidence 9 4556655555554444444 56779999999998655555555 78888865
No 364
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=57.98 E-value=8.8 Score=40.80 Aligned_cols=31 Identities=23% Similarity=0.534 Sum_probs=24.4
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+++|+|||.||+.+|..+.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 68999999999999988764 24 357777764
No 365
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=57.91 E-value=11 Score=38.89 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=28.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 369 (481)
..|+|+|||.+|+.+|-.|... .|. +++.++|++.+
T Consensus 31 ~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 31 YDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred CCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 5799999999999999988752 243 37999998643
No 366
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=57.89 E-value=9.8 Score=41.25 Aligned_cols=32 Identities=31% Similarity=0.620 Sum_probs=26.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+|+|+|||.||+..|..|.. .|. +++++|+.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 799999999999999988764 343 58888765
No 367
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.69 E-value=12 Score=40.13 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=19.9
Q ss_pred CCceEEEeCccHHHHHHHHHHHH
Q 011618 322 ADQKIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~ 344 (481)
++++++|+|+|.+|+.+|+.|.+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH
Confidence 34899999999999999988765
No 368
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=57.66 E-value=19 Score=37.00 Aligned_cols=104 Identities=19% Similarity=0.131 Sum_probs=55.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
.++.|+|+|.-|..-++.+... .++ ++|+++|++ .. ....+...+.+ . ... .....+++|+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~--~~~~~~~~~~~-~-~~~-v~~~~~~~~a 189 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PE--RAEAFAARLRD-L-GVP-VVAVDSAEEA 189 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HH--HHHHHHHHHHC-C-CTC-EEEESSHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hh--HHHHHHHhhcc-c-ccc-ceeccchhhh
Confidence 5899999999988888776654 223 688888873 11 12222222222 1 110 1135689999
Q ss_pred hcccCCcEEEeecCCCC---CCCHHHHHHhhhcCCCCCEEEecCCCCC-CCCCCCCHH
Q 011618 404 VRKVKPHVLLGLSGVGG---VFNEEVLKAMRESDSVKPAIFAMSNPTM-NGLFSCCVT 457 (481)
Q Consensus 404 V~~vkptvLIG~S~~~g---~Ft~evv~~Ma~~~~erPIIFaLSNPt~-~aE~~~t~e 457 (481)
|+. .|+++.+++... +|+.++++. .-.|-++.--++ +.| +.++
T Consensus 190 v~~--aDii~taT~s~~~~P~~~~~~l~~-------g~hi~~iGs~~~~~~E--l~~~ 236 (313)
T PF02423_consen 190 VRG--ADIIVTATPSTTPAPVFDAEWLKP-------GTHINAIGSYTPGMRE--LDDE 236 (313)
T ss_dssp HTT--SSEEEE----SSEEESB-GGGS-T-------T-EEEE-S-SSTTBES--B-HH
T ss_pred ccc--CCEEEEccCCCCCCccccHHHcCC-------CcEEEEecCCCCchhh--cCHH
Confidence 999 899998766433 688887763 346777765443 457 6654
No 369
>PRK08244 hypothetical protein; Provisional
Probab=57.63 E-value=9 Score=41.03 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
..|+|+|||.+|+..|-.|...
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~ 24 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA 24 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC
Confidence 5799999999999999888654
No 370
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=57.54 E-value=12 Score=37.71 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=30.9
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHH--HcCCChhhhcCeEEEEeccce
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAAR--MAGNNDAFARNKFFLLDKDGL 369 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~--~~Gls~eeA~~~i~lvD~~GL 369 (481)
..||+|+|+|.-|.-+++.|+.+.+. .-|.+. . -+|.++|.+-+
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~--g-~~i~lvD~D~V 56 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPG--G-LAVTVYDDDTV 56 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCC--C-CEEEEECCCEE
Confidence 38999999999999999999876321 112110 0 17999998743
No 371
>PLN02463 lycopene beta cyclase
Probab=57.52 E-value=8.5 Score=41.61 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=18.2
Q ss_pred ceEEEeCccHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (481)
-.|+|+|||.||+.+|..+.+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~ 49 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE 49 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH
Confidence 468999999999999988754
No 372
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=57.40 E-value=9.1 Score=38.79 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=25.7
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
.|+|+|||-+|+.+|-.|.+. | .++.++|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G-------~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----G-------LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 489999999999999888653 4 3588888763
No 373
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=57.39 E-value=9.1 Score=40.40 Aligned_cols=30 Identities=37% Similarity=0.521 Sum_probs=25.2
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
.|+|+|||.||+..|..+... | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 589999999999999887653 5 37889998
No 374
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=57.27 E-value=9.8 Score=39.22 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=25.6
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+|+|+|||-+|+.+|..+... | .+|.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-----g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-----G-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 699999999999999887643 4 368889886
No 375
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=57.19 E-value=10 Score=39.29 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.+|+|+|||.||+..|-.|...
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~ 24 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLA 24 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhc
Confidence 6899999999999999887653
No 376
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=57.16 E-value=15 Score=38.07 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=34.3
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 294 DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 294 DDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
|+..+.-+=-+|--+.+.......... .+++|+|||+.|+..+.+... .|. ++|+++|.
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~---~~V~V~GaGpIGLla~~~a~~-----~Ga------~~Viv~d~ 201 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPG---GTVVVVGAGPIGLLAIALAKL-----LGA------SVVIVVDR 201 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCC---CEEEEECCCHHHHHHHHHHHH-----cCC------ceEEEeCC
Confidence 334444333444444442233333333 499999999999987443332 354 57998887
No 377
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=57.16 E-value=15 Score=36.97 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=26.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
.||.|+|+|..|-.+|.-|++ .|.. ...+|+.+|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECC
Confidence 589999999999999988864 3431 1246888885
No 378
>PRK08618 ornithine cyclodeaminase; Validated
Probab=57.05 E-value=34 Score=35.24 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=56.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
.+++|+|+|..|-.++..+... .++ ++|.++|+. .++ .......+....+ .. .....+++++
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~--a~~~~~~~~~~~~-~~-~~~~~~~~~~ 189 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK--AYAFAQEIQSKFN-TE-IYVVNSADEA 189 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH--HHHHHHHHHHhcC-Cc-EEEeCCHHHH
Confidence 6899999999988777655432 243 578888874 111 2222222221110 00 0124578999
Q ss_pred hcccCCcEEEeecCCC-CCCCHHHHHHhhhcCCCCCEEEecCCCC-CCCCCCCCH
Q 011618 404 VRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPT-MNGLFSCCV 456 (481)
Q Consensus 404 V~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~~erPIIFaLSNPt-~~aE~~~t~ 456 (481)
++. .|++|-++..+ -.|+ ++++ +-.-|-++--.+ .+.| +.+
T Consensus 190 ~~~--aDiVi~aT~s~~p~i~-~~l~-------~G~hV~~iGs~~p~~~E--~~~ 232 (325)
T PRK08618 190 IEE--ADIIVTVTNAKTPVFS-EKLK-------KGVHINAVGSFMPDMQE--LPS 232 (325)
T ss_pred Hhc--CCEEEEccCCCCcchH-HhcC-------CCcEEEecCCCCccccc--CCH
Confidence 977 89999766533 2344 4432 333455554333 3567 555
No 379
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=57.04 E-value=11 Score=37.87 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=24.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccee
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 370 (481)
--++|+|||+||+..|..|.+. |+ ++.+++++=-+
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~~ 52 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLSP 52 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS-
T ss_pred CCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCCC
Confidence 5699999999999999887764 54 68888876333
No 380
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=57.03 E-value=29 Score=39.34 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=26.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.||.|+|+|..|..+|..+... |.. .+|+.+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~~-----~~V~~~d~~ 37 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GLA-----REVVAVDRR 37 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CCC-----CEEEEEECC
Confidence 6899999999999999988653 431 358888874
No 381
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=56.87 E-value=8.9 Score=43.93 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=28.9
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
++=+.++|+++|..+| .++=-.++.+.+ . +-+|=|.+=.-||.+
T Consensus 413 ~l~~~~~~~~ilasNT-Ssl~i~~la~~~-~-~p~r~~g~Hff~P~~ 456 (715)
T PRK11730 413 EVEQKVREDTILASNT-STISISLLAKAL-K-RPENFCGMHFFNPVH 456 (715)
T ss_pred HHHhhCCCCcEEEEcC-CCCCHHHHHhhc-C-CCccEEEEecCCccc
Confidence 4445578999998776 344344555544 2 556668888999974
No 382
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=56.80 E-value=48 Score=34.72 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=29.0
Q ss_pred CCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
||.+.++-|+|.|..|..||+.+... |+ +|...|++.
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~~F-----gm-------~v~y~~~~~ 179 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLKGF-----GM-------KVLYYDRSP 179 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCC
Confidence 56669999999999999999998733 32 566677654
No 383
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=56.76 E-value=7.2 Score=41.19 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=31.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHH-cC--CChhhhcC----eEEEEecccee
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARM-AG--NNDAFARN----KFFLLDKDGLI 370 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~-~G--ls~eeA~~----~i~lvD~~GLi 370 (481)
++|+|+|||-||+..|..|.++.... .| +..=||+. +++-....|..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~ 55 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFI 55 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEE
Confidence 47999999999999999997753100 01 45556665 45555555544
No 384
>PRK08507 prephenate dehydrogenase; Validated
Probab=56.76 E-value=57 Score=32.41 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=25.7
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
||.|+|+|..|..+|..+... |.. .+++.+|++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~-----g~~-----~~v~~~d~~ 34 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEK-----GLI-----SKVYGYDHN 34 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhc-----CCC-----CEEEEEcCC
Confidence 799999999999999888653 432 368888864
No 385
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=56.65 E-value=8.8 Score=40.49 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=26.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
-.+||+|||+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4699999999999999887653 4 468899975
No 386
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=56.56 E-value=8.9 Score=42.23 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=25.5
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
.|+|+|||.||+..|..+.. .| .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar-----~g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGR-----AK-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecCC
Confidence 69999999999999987754 34 3688898753
No 387
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=56.54 E-value=11 Score=37.97 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=29.3
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccee
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 370 (481)
..+|+|+|+|-+|+.+|-.|... |. +|.++|++..-
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~-----G~-------~V~vie~~~~~ 39 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAER-----GA-------DVTVLEAGEAG 39 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHc-----CC-------EEEEEecCccC
Confidence 37899999999999999888753 53 78899987664
No 388
>PRK06185 hypothetical protein; Provisional
Probab=56.53 E-value=9.4 Score=39.31 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=24.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
..|+|+|||.+|+..|-.|.. .|+ ++.++|++
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~ 38 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKH 38 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 679999999999999977654 454 46666654
No 389
>PRK10262 thioredoxin reductase; Provisional
Probab=56.48 E-value=10 Score=38.07 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.+|+|+|||.||+..|..+...
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~~ 28 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARA 28 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHC
Confidence 7899999999999999887653
No 390
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=56.30 E-value=11 Score=39.25 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=24.8
Q ss_pred EEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce
Q 011618 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (481)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 369 (481)
|+|+|||.||+.+|..|.+. ..|+ +|.++|+.-.
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g~-------~V~lle~~~~ 35 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPDF-------RIRVIEAGRT 35 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCCC-------eEEEEeCCCC
Confidence 79999999999999777654 1253 4666766543
No 391
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=56.14 E-value=11 Score=33.32 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=25.4
Q ss_pred EEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
|+|+|||+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999999888764 3 3688888876
No 392
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=56.13 E-value=10 Score=41.83 Aligned_cols=33 Identities=18% Similarity=0.591 Sum_probs=27.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
-.|+|+|+|..|++||..|... |+ ++.++|+..
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALR-----GL-------RCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECCC
Confidence 4699999999999999988753 54 688999853
No 393
>PRK08655 prephenate dehydrogenase; Provisional
Probab=56.10 E-value=27 Score=37.65 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=23.8
Q ss_pred eEEEeC-ccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
||.|+| .|..|..+|..+... |. +++++|++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~-----G~-------~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEK-----GF-------EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHC-----CC-------EEEEEECC
Confidence 799998 699999999887653 42 57777763
No 394
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=55.97 E-value=11 Score=42.40 Aligned_cols=34 Identities=35% Similarity=0.655 Sum_probs=27.2
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
+.||+|+|+|.||+..|..|... |. ++.++|+..
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 48999999999999999888753 53 477787663
No 395
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=55.86 E-value=9.5 Score=38.99 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=24.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~ 39 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPE 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCC
Confidence 579999999999999977654 353 46667665
No 396
>PRK07538 hypothetical protein; Provisional
Probab=55.83 E-value=10 Score=39.58 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.1
Q ss_pred eEEEeCccHHHHHHHHHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~ 344 (481)
+|+|+|||.||+..|..|..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999999977654
No 397
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=55.79 E-value=9.2 Score=40.63 Aligned_cols=33 Identities=42% Similarity=0.745 Sum_probs=23.1
Q ss_pred EEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccee
Q 011618 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (481)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 370 (481)
|||+|+|.||+..|-... +.|+ ++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AA-----r~G~-------~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAA-----RAGA-------KVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHH-----HTTS--------EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHH-----HCCC-------EEEEEECCccC
Confidence 799999999999987654 4564 78999998765
No 398
>PRK06046 alanine dehydrogenase; Validated
Probab=55.75 E-value=69 Score=33.05 Aligned_cols=105 Identities=12% Similarity=0.086 Sum_probs=62.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
.++.|+|+|..|...++.+... .++ ++++++|++- + ........+.+..+ +. .....+++|+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~----~~i------~~v~v~~r~~----~--~~~~~~~~~~~~~~-~~-v~~~~~~~~~ 191 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV----FDL------EEVRVYDRTK----S--SAEKFVERMSSVVG-CD-VTVAEDIEEA 191 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh----CCc------eEEEEECCCH----H--HHHHHHHHHHhhcC-ce-EEEeCCHHHH
Confidence 6999999999988777666432 232 6788888841 1 12222222221100 00 0123578888
Q ss_pred hcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCEEEecCC-CCCCCCCCCCHHH
Q 011618 404 VRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNGLFSCCVTT 458 (481)
Q Consensus 404 V~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~~erPIIFaLSN-Pt~~aE~~~t~ed 458 (481)
++ .|+++-++.. ..+|..++++. .-.|-++.- -..+.| +.++-
T Consensus 192 l~---aDiVv~aTps~~P~~~~~~l~~-------g~hV~~iGs~~p~~~E--l~~~~ 236 (326)
T PRK06046 192 CD---CDILVTTTPSRKPVVKAEWIKE-------GTHINAIGADAPGKQE--LDPEI 236 (326)
T ss_pred hh---CCEEEEecCCCCcEecHHHcCC-------CCEEEecCCCCCcccc--CCHHH
Confidence 85 7998877643 36788887753 224666654 444789 88763
No 399
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=55.64 E-value=10 Score=40.59 Aligned_cols=31 Identities=26% Similarity=0.664 Sum_probs=20.9
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+|+|+|||+||+-.|-.+.+ .| .++.+++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~-----~g-------~~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE-----KG-------ARVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH-----TT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CCEEEEeCC
Confidence 58999999999999887743 45 368888876
No 400
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=55.59 E-value=10 Score=40.44 Aligned_cols=31 Identities=39% Similarity=0.595 Sum_probs=26.0
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
|++|+|+|+||+..|..+.+ .| +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 79999999999999988765 35 469999975
No 401
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=55.56 E-value=46 Score=30.48 Aligned_cols=38 Identities=32% Similarity=0.344 Sum_probs=23.3
Q ss_pred CcEEEeecCCCCCCCHHHHHHhhhc-CCCCCEEEecCCCCC
Q 011618 409 PHVLLGLSGVGGVFNEEVLKAMRES-DSVKPAIFAMSNPTM 448 (481)
Q Consensus 409 ptvLIG~S~~~g~Ft~evv~~Ma~~-~~erPIIFaLSNPt~ 448 (481)
-|++|++|.. | -|+++++.+... ...-|+|-=-+||.+
T Consensus 80 ~D~~i~iS~s-G-~t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 80 GDVLLGISTS-G-NSKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred CCEEEEEcCC-C-CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 6999999973 4 577777766321 234566653444444
No 402
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=55.51 E-value=9.6 Score=41.29 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=27.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
-.|||+|+|.+|+++|..+.. .|+ ++.+++++-
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECCC
Confidence 469999999999999999865 364 588898763
No 403
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=55.48 E-value=12 Score=40.44 Aligned_cols=32 Identities=31% Similarity=0.685 Sum_probs=25.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~-----~G~-------~V~i~e~~ 173 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILAR-----AGV-------QVVVFDRH 173 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 799999999999999888754 353 47777765
No 404
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.13 E-value=11 Score=39.61 Aligned_cols=25 Identities=20% Similarity=0.509 Sum_probs=21.1
Q ss_pred CCCceEEEeCccHHHHHHHHHHHHH
Q 011618 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
|++.+++|.|+|..|.++|+.+.+.
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~ 27 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKL 27 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHC
Confidence 3448999999999999999888764
No 405
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=55.02 E-value=12 Score=44.58 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=29.7
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc----ceeec
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD----GLITK 372 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~----GLi~~ 372 (481)
+.||+|+|||.||+..|..|... |. ++.++|+. |++..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~-----G~-------~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKY-----GV-------DVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-----CC-------cEEEEecCCCCcceeec
Confidence 47999999999999999888754 53 57888876 55544
No 406
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=54.99 E-value=26 Score=32.78 Aligned_cols=46 Identities=26% Similarity=0.480 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 307 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 307 ll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+.++...+.-... ++|+|+|+|+.|..++++... .| .+++.++++
T Consensus 122 a~~~l~~~~~~~~~---~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 122 AYHALRRAGVLKPG---DTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHHhccCCCCC---CEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 34445444443345 899999999866666554432 34 367777664
No 407
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=54.87 E-value=9.7 Score=38.97 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=24.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 6 ~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 579999999999999977654 353 46667654
No 408
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=54.86 E-value=53 Score=34.63 Aligned_cols=120 Identities=15% Similarity=0.118 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhc
Q 011618 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP 383 (481)
Q Consensus 304 LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~ 383 (481)
.|+.++|=.+..+.. .++.|+|+|.-+-..++-+... -++ ++|++.|++ ++.-+.
T Consensus 116 AasavAa~~LA~~da-----~~laiIGaG~qA~~ql~a~~~v----~~~------~~I~i~~r~----------~~~~e~ 170 (330)
T COG2423 116 AASAVAAKYLARKDA-----STLAIIGAGAQARTQLEALKAV----RDI------REIRVYSRD----------PEAAEA 170 (330)
T ss_pred HHHHHHHHHhccCCC-----cEEEEECCcHHHHHHHHHHHhh----CCc------cEEEEEcCC----------HHHHHH
Confidence 345565555555544 4689999998755544444332 222 567776663 222223
Q ss_pred ccc----ccCCcCCcCCCCCHHHHhcccCCcEEEeecCC-CCCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCCHHH
Q 011618 384 FAK----DPGDFMGLREGASLLEVVRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCCVTT 458 (481)
Q Consensus 384 fA~----~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t~ed 458 (481)
|+. .... ......|+++||++ .|+++.++.. .-.|+.++|+.= -=|.-.=||+-.+.| +.+|-
T Consensus 171 ~a~~l~~~~~~--~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~~G------~hI~aiGad~p~k~E--ld~e~ 238 (330)
T COG2423 171 FAARLRKRGGE--AVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLKPG------THINAIGADAPGKRE--LDPEV 238 (330)
T ss_pred HHHHHHhhcCc--cceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcCCC------cEEEecCCCCccccc--CCHHH
Confidence 332 2110 01235789999999 9999998653 367888887732 224444568888999 88865
Q ss_pred HH
Q 011618 459 FF 460 (481)
Q Consensus 459 a~ 460 (481)
..
T Consensus 239 l~ 240 (330)
T COG2423 239 LA 240 (330)
T ss_pred HH
Confidence 43
No 409
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=54.83 E-value=9.4 Score=39.07 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.4
Q ss_pred eEEEeCccHHHHHHHHHHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (481)
.|+|+|||.||+..|-.|..+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~ 23 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQA 23 (403)
T ss_pred CEEEECccHHHHHHHHHHhcC
Confidence 589999999999999887654
No 410
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=54.58 E-value=11 Score=40.11 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=24.9
Q ss_pred EEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+||+|||+||+..|..+.+. | .++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~~-----g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAEL-----G-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 89999999999999887653 5 478899975
No 411
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=54.48 E-value=58 Score=33.50 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=24.9
Q ss_pred CCcEEEeecCCCCCCCHHHHHHhhhc-CCCCCEEEecCCCCC
Q 011618 408 KPHVLLGLSGVGGVFNEEVLKAMRES-DSVKPAIFAMSNPTM 448 (481)
Q Consensus 408 kptvLIG~S~~~g~Ft~evv~~Ma~~-~~erPIIFaLSNPt~ 448 (481)
+-|++||+|.. | =|++++..+... ...-|+|.=-+||.+
T Consensus 131 ~~DvvI~IS~S-G-~T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 131 AKDVVVGIAAS-G-RTPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCCEEEEEeCC-C-CCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 47999999974 4 378888888432 223455554455655
No 412
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=54.34 E-value=80 Score=31.47 Aligned_cols=91 Identities=22% Similarity=0.210 Sum_probs=54.8
Q ss_pred ceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHH
Q 011618 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (481)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e 402 (481)
.||.|+|+ |..|-.+++.+... .++ +-..++|++. .+ ... + ... . .....++.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~--~~~----~-~~~-~---i~~~~dl~~ 56 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SP--LVG----Q-GAL-G---VAITDDLEA 56 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cc--ccc----c-CCC-C---ccccCCHHH
Confidence 48999999 99999888776541 222 2355677642 11 100 0 100 0 112467888
Q ss_pred HhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
+++ ++|++|=+|. |... .++++...+ ...|+|.. ||-
T Consensus 57 ll~--~~DvVid~t~-p~~~-~~~~~~al~--~G~~vvig---ttG 93 (257)
T PRK00048 57 VLA--DADVLIDFTT-PEAT-LENLEFALE--HGKPLVIG---TTG 93 (257)
T ss_pred hcc--CCCEEEECCC-HHHH-HHHHHHHHH--cCCCEEEE---CCC
Confidence 886 4999998884 4544 666666544 57888865 555
No 413
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.27 E-value=12 Score=40.53 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=21.3
Q ss_pred CCceEEEeCccHHHHHHHHHHHHH
Q 011618 322 ADQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.++||+|+|.|-.|.++|++|...
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~ 30 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAH 30 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHc
Confidence 348999999999999999998764
No 414
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=53.91 E-value=12 Score=38.71 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=18.3
Q ss_pred ceEEEeCccHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (481)
.+|+|+|||.||+..|-.|..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~ 24 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK 24 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh
Confidence 579999999999999977754
No 415
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=53.66 E-value=12 Score=41.23 Aligned_cols=32 Identities=38% Similarity=0.711 Sum_probs=25.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+||.|+|||..|.|||..+..+ |. .++++|++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-----G~-------~V~l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-----GH-------TVLLYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 5799999999999999988764 43 57777753
No 416
>PTZ00188 adrenodoxin reductase; Provisional
Probab=53.64 E-value=16 Score=40.69 Aligned_cols=39 Identities=28% Similarity=0.341 Sum_probs=29.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc----ceeecC
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD----GLITKE 373 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~----GLi~~~ 373 (481)
.||+|+|||.||+..|..++.. .|. ++-++|+. ||+.-+
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~----~g~-------~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKH----ERV-------KVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHh----cCC-------eEEEEecCCCCccEEEEe
Confidence 7999999999999999976642 242 57788875 555543
No 417
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=53.63 E-value=12 Score=39.04 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=19.0
Q ss_pred eEEEeCccHHHHHHHHHHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (481)
||+|+|||-||+..|..|..+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~ 22 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH 22 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc
Confidence 799999999999999998764
No 418
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=53.56 E-value=11 Score=39.74 Aligned_cols=32 Identities=34% Similarity=0.595 Sum_probs=26.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 4699999999999999877653 4 478889983
No 419
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=53.41 E-value=39 Score=34.62 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=26.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.||.|+|+|..|-+|+.-|+.... ++ ..+|++.|+.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~----~~----~~~I~v~~~~ 37 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGA----LP----PEEIIVTNRS 37 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCC----CC----cceEEEeCCC
Confidence 689999999999998887776421 33 2578877763
No 420
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=53.29 E-value=5.9 Score=41.10 Aligned_cols=89 Identities=20% Similarity=0.274 Sum_probs=51.6
Q ss_pred EEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChh-------hhccccccCCcCCcCCCC
Q 011618 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA-------AAPFAKDPGDFMGLREGA 398 (481)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~-------k~~fA~~~~~~~~~~~~~ 398 (481)
|+|+|||..|-.+++.|.+.. .. .++.+.|++- +.+... +..+.+-+ ..+..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~----~~------~~v~va~r~~------~~~~~~~~~~~~~~~~~~~~d-----~~~~~ 59 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG----PF------EEVTVADRNP------EKAERLAEKLLGDRVEAVQVD-----VNDPE 59 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT----CE-------EEEEEESSH------HHHHHHHT--TTTTEEEEE-------TTTHH
T ss_pred CEEEcCcHHHHHHHHHHhcCC----CC------CcEEEEECCH------HHHHHHHhhccccceeEEEEe-----cCCHH
Confidence 799999999999999887642 11 2788888741 111111 11111110 01234
Q ss_pred CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEE
Q 011618 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (481)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIF 441 (481)
+|.+.++. .|++|-+++.. +...++++-.+ ...+.|=
T Consensus 60 ~l~~~~~~--~dvVin~~gp~--~~~~v~~~~i~--~g~~yvD 96 (386)
T PF03435_consen 60 SLAELLRG--CDVVINCAGPF--FGEPVARACIE--AGVHYVD 96 (386)
T ss_dssp HHHHHHTT--SSEEEE-SSGG--GHHHHHHHHHH--HT-EEEE
T ss_pred HHHHHHhc--CCEEEECCccc--hhHHHHHHHHH--hCCCeec
Confidence 59999988 69999988633 88888888654 3445554
No 421
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=53.13 E-value=13 Score=39.83 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=26.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
-.+||+|||+||+..|..+.+. | +++.++|+.
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 5699999999999999887653 5 479999975
No 422
>PRK07208 hypothetical protein; Provisional
Probab=53.07 E-value=12 Score=39.57 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.1
Q ss_pred CceEEEeCccHHHHHHHHHHHHH
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
..+|+|+|||-||+..|..|..+
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~ 26 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKR 26 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHC
Confidence 36899999999999999888764
No 423
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=52.94 E-value=11 Score=39.07 Aligned_cols=32 Identities=13% Similarity=0.386 Sum_probs=24.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 579999999999999977654 454 46666653
No 424
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=52.88 E-value=1.4e+02 Score=33.61 Aligned_cols=193 Identities=14% Similarity=0.126 Sum_probs=113.6
Q ss_pred hhhhHhHHHHHHHHHHhC-CceEEEeecCC--CchHHHHHHHHhhcC----------Ccc----ccCcchhHHHHHHHHH
Q 011618 246 EEYLSIVDEFMEAVHARW-PKAIVQFEDFQ--MKWAFETLERYRKRF----------CMF----NDDIQGTAGVALAGLL 308 (481)
Q Consensus 246 ~~Y~~~vdefv~av~~~~-P~~~IqfEDf~--~~naf~iL~ryr~~~----------~~F----NDDiQGTaaV~LAgll 308 (481)
.|-..+.-.||..+.+.- |..-+==+|++ ...---+++.|+..+ +.- |+-.-.|+-=+..++=
T Consensus 158 nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e 237 (514)
T KOG2250|consen 158 NEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVE 237 (514)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHHH
Confidence 344445556666555533 76666667766 222334788888642 222 3333334433333333
Q ss_pred HHHHHhC--CCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhh-hccc
Q 011618 309 GTVRAQG--LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA-APFA 385 (481)
Q Consensus 309 ~Alr~~g--~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k-~~fA 385 (481)
+=++-.+ +.++. .|+++-|-|-.|.-.|..|.+... +-|-+-|++|.|.... .++..+ ..++
T Consensus 238 ~~~~~~~~~~~~kg---kr~~i~G~Gnv~~~aa~~l~~~G~-----------kvvavsD~~G~l~np~-Gid~~eL~~~~ 302 (514)
T KOG2250|consen 238 AILNDANGKKGIKG---KRVVIQGFGNVGGHAAKKLSEKGA-----------KVVAVSDSKGVLINPD-GIDIEELLDLA 302 (514)
T ss_pred HHHHhccCCCCcCc---eEEEEeCCCchHHHHHHHHHhcCC-----------EEEEEEcCceeEECCC-CCCHHHHHHHH
Confidence 3233333 55666 999999999999999988887533 5788899999998754 344332 2222
Q ss_pred cccCCcCCcCCCC----------CHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCCCCCCCCC
Q 011618 386 KDPGDFMGLREGA----------SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNGLFSCC 455 (481)
Q Consensus 386 ~~~~~~~~~~~~~----------~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~~aE~~~t 455 (481)
.......+.+... .+.--|. |.||++=+.++ +..|.+=....-++.+ |+|.==||=-.-.|
T Consensus 303 ~~k~~i~~f~~~~~~~~~~~~~~~~~~~v~--~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptTpe---- 373 (514)
T KOG2250|consen 303 DEKKTIKSFDGAKLSYEGYIAGLPPWTLVE--KCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTTPE---- 373 (514)
T ss_pred HhhccccccccccccCccccccCcchhhHh--hCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCChh----
Confidence 2111000000000 0122233 48999999997 9999888888855344 89998898544445
Q ss_pred HHHHHhc
Q 011618 456 VTTFFFY 462 (481)
Q Consensus 456 ~eda~~w 462 (481)
+.++++-
T Consensus 374 A~~vlek 380 (514)
T KOG2250|consen 374 ADEVLEK 380 (514)
T ss_pred HHHHHHh
Confidence 6666653
No 425
>PRK08013 oxidoreductase; Provisional
Probab=52.84 E-value=12 Score=38.83 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.2
Q ss_pred ceEEEeCccHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (481)
-.|+|+|||.||+..|-.|..
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~ 24 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQG 24 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhh
Confidence 579999999999999977654
No 426
>PRK09897 hypothetical protein; Provisional
Probab=52.71 E-value=13 Score=41.24 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=27.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+|+|+|||.+|+.+|..|+.. +- .-+|.++|+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~-----~~-----~l~V~lfEp~ 35 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQ-----QT-----PLSISIFEQA 35 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhc-----CC-----CCcEEEEecC
Confidence 3799999999999999999762 11 1369999984
No 427
>PRK13984 putative oxidoreductase; Provisional
Probab=52.57 E-value=13 Score=41.05 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=26.3
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
..+++|+|||.||+..|..|... |. ++.++|+.
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~-----G~-------~v~vie~~ 315 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATM-----GY-------EVTVYESL 315 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 37899999999999999998753 43 47777764
No 428
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.54 E-value=13 Score=37.01 Aligned_cols=31 Identities=39% Similarity=0.638 Sum_probs=25.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
+||.|+|+|..|.+||..+... |. +++++|.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~ 34 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDI 34 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeC
Confidence 5899999999999999988543 43 5778884
No 429
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=52.46 E-value=11 Score=45.05 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=32.8
Q ss_pred CCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
++|.+ .+|+|+|+|.-|.-||+.|+.+++ ++|.++|.+-
T Consensus 20 ~kL~~---s~VLIiG~gGLG~EiaKnL~laGV-----------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAK---SNVLISGMGGLGLEIAKNLVLAGV-----------KSVTLHDTEK 58 (1008)
T ss_pred HHHhh---CcEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCCe
Confidence 34455 999999999999999999988755 6899999873
No 430
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.42 E-value=14 Score=39.27 Aligned_cols=27 Identities=33% Similarity=0.597 Sum_probs=21.9
Q ss_pred CCCCCceEEEeCccHHHHHHHHHHHHH
Q 011618 319 TDFADQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 319 ~dl~~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
++|++.||.|+|.|-.|+++|++|...
T Consensus 5 ~~~~~~~i~viG~G~~G~~~a~~l~~~ 31 (460)
T PRK01390 5 TGFAGKTVAVFGLGGSGLATARALVAG 31 (460)
T ss_pred cccCCCEEEEEeecHhHHHHHHHHHHC
Confidence 345558999999999999998887654
No 431
>PRK05868 hypothetical protein; Validated
Probab=52.14 E-value=12 Score=38.66 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.8
Q ss_pred ceEEEeCccHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (481)
.+|+|+|||.||+..|-.|..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 479999999999999977754
No 432
>PRK10015 oxidoreductase; Provisional
Probab=51.99 E-value=12 Score=39.85 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=24.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
-.|+|+|||.||+..|..+.. .|+ ++.++|+.
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~ 37 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERG 37 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999988754 454 46667654
No 433
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=51.89 E-value=9.7 Score=37.42 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=23.8
Q ss_pred EEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccee
Q 011618 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (481)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 370 (481)
+||+|+|+||.-+|..|.+. | ..+|.++.+-+..
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~-----~------~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEA-----G------NKKVLVLEAGPRY 36 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTS-----T------TS-EEEEESSBSC
T ss_pred EEEECcCHHHHHHHHHHhhC-----C------CCcEEEEEccccC
Confidence 79999999999999887642 2 2478887775543
No 434
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=51.84 E-value=14 Score=38.66 Aligned_cols=33 Identities=33% Similarity=0.460 Sum_probs=26.4
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 369 (481)
.|+|+|||-||+..|..|.++ |. .+.++|+.+=
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcCCC
Confidence 599999999999999998765 53 4778887543
No 435
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=51.78 E-value=12 Score=40.71 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.+|+|+|||.+|+..|..|...
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~ 45 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQ 45 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhC
Confidence 5899999999999999887643
No 436
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=51.44 E-value=14 Score=38.44 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.3
Q ss_pred ceEEEeCccHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (481)
.+|+|+|||.||+..|-.|..
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~ 23 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK 23 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH
Confidence 579999999999999977654
No 437
>PRK06834 hypothetical protein; Provisional
Probab=51.42 E-value=14 Score=40.06 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.0
Q ss_pred CceEEEeCccHHHHHHHHHHHHH
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
+..|+|+|||.+|+..|-.|...
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~ 25 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA 25 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC
Confidence 37899999999999999888654
No 438
>PRK14694 putative mercuric reductase; Provisional
Probab=51.41 E-value=15 Score=39.37 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=26.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 7 ~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 7 LHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 5799999999999999888764 4 368888875
No 439
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=51.30 E-value=11 Score=43.19 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.+|+|+|||.||+..|-.|...
T Consensus 82 ~~VlIVGgGIaGLalAlaL~r~ 103 (668)
T PLN02927 82 SRVLVAGGGIGGLVFALAAKKK 103 (668)
T ss_pred CCEEEECCCHHHHHHHHHHHhc
Confidence 7999999999999999888764
No 440
>PLN02985 squalene monooxygenase
Probab=51.11 E-value=15 Score=40.31 Aligned_cols=32 Identities=22% Similarity=0.579 Sum_probs=24.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+|+|+|||.||+..|-.|.+ .|. ++.++|++
T Consensus 44 ~DViIVGAG~aGlalA~aLa~-----~G~-------~V~vlEr~ 75 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAK-----DGR-------RVHVIERD 75 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEECc
Confidence 589999999999999977754 353 56777764
No 441
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.93 E-value=16 Score=38.82 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=20.3
Q ss_pred CCceEEEeCccHHHHHHHHHHHHH
Q 011618 322 ADQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.+.+|+|+|+|.+|+++|+.|.+.
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~ 27 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKN 27 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC
Confidence 348999999999999998887654
No 442
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=50.78 E-value=61 Score=31.39 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=43.4
Q ss_pred eEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhh----hccccccCCcCCcCCCCC
Q 011618 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA----APFAKDPGDFMGLREGAS 399 (481)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k----~~fA~~~~~~~~~~~~~~ 399 (481)
+|+|.|| |..|..+++.|+.. |- .-+++.+|+...- ...+.+.... ..+.. .+ ..+..+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~D---l~~~~~ 64 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTYA-GNLENLADLEDNPRYRFVK--GD---IGDREL 64 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCcc-hhhhhhhhhccCCCcEEEE--cC---CcCHHH
Confidence 5888998 88888888877653 21 1367777752110 0011111110 01111 00 112346
Q ss_pred HHHHhcccCCcEEEeecCC
Q 011618 400 LLEVVRKVKPHVLLGLSGV 418 (481)
Q Consensus 400 L~e~V~~vkptvLIG~S~~ 418 (481)
+.++++..+||++|=+++.
T Consensus 65 ~~~~~~~~~~d~vi~~a~~ 83 (317)
T TIGR01181 65 VSRLFTEHQPDAVVHFAAE 83 (317)
T ss_pred HHHHHhhcCCCEEEEcccc
Confidence 8888988889999988864
No 443
>PLN02568 polyamine oxidase
Probab=50.34 E-value=17 Score=40.23 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAA 346 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~ 346 (481)
.+|+|+|||.||+..|..|....
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~g 28 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTSS 28 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhcc
Confidence 68999999999999999998753
No 444
>PRK13748 putative mercuric reductase; Provisional
Probab=50.23 E-value=13 Score=40.39 Aligned_cols=32 Identities=25% Similarity=0.537 Sum_probs=26.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
-.++|+|||+||+..|..+.++ | .++.++|++
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~-----G-------~~v~lie~~ 130 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQ-----G-------ARVTLIERG 130 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 5799999999999999887764 4 478899975
No 445
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=50.21 E-value=61 Score=30.00 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=22.3
Q ss_pred CcEEEeecCCCCCCCHHHHHHhhhc-CCCCCEEEecCC
Q 011618 409 PHVLLGLSGVGGVFNEEVLKAMRES-DSVKPAIFAMSN 445 (481)
Q Consensus 409 ptvLIG~S~~~g~Ft~evv~~Ma~~-~~erPIIFaLSN 445 (481)
-|++|++|.. | -|+++++.+... ...-|+|- ++|
T Consensus 102 ~Dv~I~iS~S-G-~t~~~i~~~~~ak~~Ga~vI~-IT~ 136 (177)
T cd05006 102 GDVLIGISTS-G-NSPNVLKALEAAKERGMKTIA-LTG 136 (177)
T ss_pred CCEEEEEeCC-C-CCHHHHHHHHHHHHCCCEEEE-EeC
Confidence 6999999963 3 588888888432 23345554 554
No 446
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=50.05 E-value=69 Score=31.22 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=22.7
Q ss_pred CcEEEeecCCCCCCCHHHHHHhhhcC-CCCCEEEecCC
Q 011618 409 PHVLLGLSGVGGVFNEEVLKAMRESD-SVKPAIFAMSN 445 (481)
Q Consensus 409 ptvLIG~S~~~g~Ft~evv~~Ma~~~-~erPIIFaLSN 445 (481)
-|++|++|- .| -|+++++.|.... ..-|||- ++|
T Consensus 48 ~d~~i~iS~-sG-~t~~~~~~~~~a~~~g~~ii~-iT~ 82 (268)
T TIGR00393 48 NDVVLMISY-SG-ESLELLNLIPHLKRLSHKIIA-FTG 82 (268)
T ss_pred CCEEEEEeC-CC-CCHHHHHHHHHHHHcCCcEEE-EEC
Confidence 589999996 34 7899998884322 3345554 555
No 447
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=50.00 E-value=14 Score=38.36 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=26.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
..|+|+|||.||+..|-.|.. .|+ ++.++++.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccC
Confidence 679999999999999988765 454 57788886
No 448
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=49.77 E-value=13 Score=41.96 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=25.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
..|+|+|||.||+..|-.|... .|+ ++.++|++
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~ 65 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERK 65 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcC
Confidence 7899999999999999887652 244 36667765
No 449
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=49.73 E-value=94 Score=34.58 Aligned_cols=23 Identities=9% Similarity=0.388 Sum_probs=20.2
Q ss_pred CceEEEeCccHHHHHHHHHHHHH
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
+.|+.|+|-..-.+|+++.|.+.
T Consensus 363 GKrvaI~gdpd~~~~l~~fL~El 385 (515)
T TIGR01286 363 GKRFAIYGDPDFVMGLVRFVLEL 385 (515)
T ss_pred CceEEEECCHHHHHHHHHHHHHC
Confidence 38999999999999999998753
No 450
>PRK07190 hypothetical protein; Provisional
Probab=49.61 E-value=15 Score=40.02 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=24.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
..|+|+|||.+|+..|-.+.. .|+ ++.++|+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar-----~Gi-------~V~llEr~ 37 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQL-----CGL-------NTVIVDKS 37 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----cCC-------CEEEEeCC
Confidence 579999999999998876543 454 36667765
No 451
>PRK06545 prephenate dehydrogenase; Validated
Probab=49.56 E-value=57 Score=34.04 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.||.|+|+|..|..+|..|...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc
Confidence 3799999999999999998654
No 452
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=49.28 E-value=15 Score=38.76 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=27.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
-.|+|+|||.||+..|..+.+. | .++.++|++.
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~~ 38 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERYR 38 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEeccc
Confidence 5699999999999999887653 4 4799999863
No 453
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=49.24 E-value=16 Score=39.41 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=24.4
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+|||+|+|+||.-.|-.|...+. + .-+|.++.+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~---~------~~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGP---D------ALSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCT---C------SSEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCC---C------CcEEEEEecC
Confidence 69999999999999999887642 0 0378888886
No 454
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=49.24 E-value=34 Score=34.15 Aligned_cols=47 Identities=32% Similarity=0.487 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 305 Agll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
+..+.+++..+... . ++++|.|+|+.|...+.+... .|. ++++.+|+
T Consensus 150 ~ta~~~l~~~~~~~-g---~~vlV~G~G~vG~~~~~~ak~-----~G~------~~vi~~~~ 196 (339)
T cd08239 150 GTAYHALRRVGVSG-R---DTVLVVGAGPVGLGALMLARA-----LGA------EDVIGVDP 196 (339)
T ss_pred HHHHHHHHhcCCCC-C---CEEEEECCCHHHHHHHHHHHH-----cCC------CEEEEECC
Confidence 34455555444322 3 799999998777766555433 343 34776665
No 455
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=49.19 E-value=14 Score=42.41 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=28.6
Q ss_pred HHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
+.=+.++|+++|..+| ..+--.++-..+ . +-+|=|.+=.-||.+
T Consensus 413 ~l~~~~~~~~ilasnT-S~l~i~~ia~~~-~-~p~r~ig~Hff~P~~ 456 (714)
T TIGR02437 413 EVEQHVREDAILASNT-STISISLLAKAL-K-RPENFCGMHFFNPVH 456 (714)
T ss_pred HHHhhCCCCcEEEECC-CCCCHHHHHhhc-C-CcccEEEEecCCCcc
Confidence 3335578999998877 344444444444 2 455658888899976
No 456
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=49.18 E-value=35 Score=34.49 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHH
Q 011618 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAV 343 (481)
Q Consensus 304 LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~ 343 (481)
.+..+.|+...+..-.. ++++|.|+|+.|..++++..
T Consensus 162 ~~ta~~al~~~~~~~~g---~~vlI~g~g~vG~~~~~lak 198 (361)
T cd08231 162 LATVLAALDRAGPVGAG---DTVVVQGAGPLGLYAVAAAK 198 (361)
T ss_pred HHHHHHHHHhccCCCCC---CEEEEECCCHHHHHHHHHHH
Confidence 33445556555544344 89999998877776655443
No 457
>PRK06126 hypothetical protein; Provisional
Probab=49.13 E-value=17 Score=39.56 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=24.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~ 39 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERK 39 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 689999999999999987764 454 45666654
No 458
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=48.99 E-value=38 Score=28.63 Aligned_cols=90 Identities=20% Similarity=0.261 Sum_probs=50.5
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHHh
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~V 404 (481)
||.|+|+|..|.....-+... ..+. +-..++|.+ .+.-+.+++... .+...++.|.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~---~~~~------~v~~v~d~~----------~~~~~~~~~~~~----~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS---SPDF------EVVAVCDPD----------PERAEAFAEKYG----IPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT---TTTE------EEEEEECSS----------HHHHHHHHHHTT----SEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhc---CCCc------EEEEEEeCC----------HHHHHHHHHHhc----ccchhHHHHHH
Confidence 899999999977665544432 0121 223455552 111122232211 12357899999
Q ss_pred cccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEE
Q 011618 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (481)
Q Consensus 405 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIF 441 (481)
+.-++|+++ +++ |...-.++++...+ ...+|+.
T Consensus 59 ~~~~~D~V~-I~t-p~~~h~~~~~~~l~--~g~~v~~ 91 (120)
T PF01408_consen 59 ADEDVDAVI-IAT-PPSSHAEIAKKALE--AGKHVLV 91 (120)
T ss_dssp HHTTESEEE-EES-SGGGHHHHHHHHHH--TTSEEEE
T ss_pred HhhcCCEEE-Eec-CCcchHHHHHHHHH--cCCEEEE
Confidence 987899988 554 45556666666544 2335543
No 459
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=48.76 E-value=67 Score=32.87 Aligned_cols=92 Identities=17% Similarity=0.140 Sum_probs=55.9
Q ss_pred cccccchhhHHHHHHHhhcccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCce--eeccCCCCCccccccchhhh
Q 011618 125 APIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSR--ILGLGDLGVQGIGIPIGKLD 202 (481)
Q Consensus 125 lpiiYTPtVg~ac~~~s~~~rrprGlyis~~d~g~i~~~l~nwp~~~v~viVVTDG~r--ILGLGDlG~~Gm~I~iGKl~ 202 (481)
||=+|....+..+.+. +++++.|+|+-. .||.-|.+.-.|.-|+--+.
T Consensus 19 ~~tayD~~sArl~e~a------------------------------G~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~ 68 (264)
T PRK00311 19 MLTAYDYPFAKLFDEA------------------------------GVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTK 68 (264)
T ss_pred EEeCCCHHHHHHHHHc------------------------------CCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHH
Confidence 6777887777766665 468888877743 47777766555544433222
Q ss_pred hhhhhcCCCCCceecEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhCC--ce-EEEeec
Q 011618 203 VYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP--KA-IVQFED 272 (481)
Q Consensus 203 LY~a~gGI~P~~~LPV~LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P--~~-~IqfED 272 (481)
-- +-|.+ .-||+.|++-. .|..-.++.++.+.+.+- .+ .|++||
T Consensus 69 ~V--~r~~~---~p~vvaD~pfg---------------------~y~~~~~~av~~a~r~~~~aGa~aVkiEd 115 (264)
T PRK00311 69 AV--ARGAP---RALVVADMPFG---------------------SYQASPEQALRNAGRLMKEAGAHAVKLEG 115 (264)
T ss_pred HH--HhcCC---CCcEEEeCCCC---------------------CccCCHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 22 44444 33688998622 232345665555555553 44 999999
No 460
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=48.66 E-value=15 Score=39.93 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.+|+|+|||.+|+..|..|...
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~ 32 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQY 32 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHC
Confidence 6899999999999999887653
No 461
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=48.58 E-value=56 Score=33.69 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.||.|+|||+.|.-.|-.|..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~ 22 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA 22 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC
Confidence 3899999999999998888765
No 462
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=48.36 E-value=66 Score=33.46 Aligned_cols=37 Identities=19% Similarity=0.038 Sum_probs=25.6
Q ss_pred CHHHHhcccCCcE-EEeecCCCCCCCHHHHHHhhhcCCCCCEEE
Q 011618 399 SLLEVVRKVKPHV-LLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (481)
Q Consensus 399 ~L~e~V~~vkptv-LIG~S~~~g~Ft~evv~~Ma~~~~erPIIF 441 (481)
.|.+.... .|+ ++|-|-..+ |..-++++|+ +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma---~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA---FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH---hCCCEEE
Confidence 36666666 787 676664333 5556899996 5899997
No 463
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=48.31 E-value=63 Score=32.89 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=51.6
Q ss_pred ceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCc-CCcCCCCCHH
Q 011618 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDF-MGLREGASLL 401 (481)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~-~~~~~~~~L~ 401 (481)
.+||.+.. ++.++|-+ ..+|+ .-|++ ++++|+.+ ..+++.-..+|....+. ++-....||+
T Consensus 5 i~iVLVep~~~gNIG~v---ARaMK-NfGl~------eL~LV~Pr-------~~~~eeA~a~A~gA~dile~A~i~~tL~ 67 (242)
T COG0565 5 IRIVLVEPSHPGNIGSV---ARAMK-NFGLS------ELRLVNPR-------AGLDEEARALAAGARDILENAKIVDTLE 67 (242)
T ss_pred cEEEEEcCCCCccHHHH---HHHHH-hCCcc------eEEEECCC-------CCCCHHHHHHhccchhhhccCeeecCHH
Confidence 66666653 56667753 45666 67986 58888763 33566655666543321 2112457999
Q ss_pred HHhcccCCcEEEeecCCCCC
Q 011618 402 EVVRKVKPHVLLGLSGVGGV 421 (481)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~ 421 (481)
|||.. .+.+||+|+-...
T Consensus 68 eAl~d--~~~v~aTtar~r~ 85 (242)
T COG0565 68 EALAD--CDLVVATTARSRD 85 (242)
T ss_pred HHhcC--CCEEEEeccccCc
Confidence 99998 9999999976543
No 464
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=48.30 E-value=22 Score=41.67 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=29.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceee
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~ 371 (481)
+||||+|+|.||+..|+.|..... .. .-.|.+++..--+.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~-~~-------~~~Itvi~~e~~~~ 43 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKAD-AA-------NFDITVFCEEPRIA 43 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCC-CC-------CCeEEEEECCCCCc
Confidence 699999999999999998875321 01 13688888765443
No 465
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=48.24 E-value=86 Score=31.30 Aligned_cols=62 Identities=23% Similarity=0.444 Sum_probs=39.5
Q ss_pred eEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
||+|.|| |-.|..+++.|.+ .| +++.+|+..- .+.-+- .+...+.++
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~-----~g--------~V~~~~~~~~-------------~~~~Dl------~d~~~~~~~ 49 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAP-----LG--------NLIALDVHST-------------DYCGDF------SNPEGVAET 49 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhc-----cC--------CEEEeccccc-------------cccCCC------CCHHHHHHH
Confidence 7999997 9999888877653 23 3566665310 000010 123357788
Q ss_pred hcccCCcEEEeecCC
Q 011618 404 VRKVKPHVLLGLSGV 418 (481)
Q Consensus 404 V~~vkptvLIG~S~~ 418 (481)
++..+||++|=+.+.
T Consensus 50 ~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 50 VRKIRPDVIVNAAAH 64 (299)
T ss_pred HHhcCCCEEEECCcc
Confidence 888889999976654
No 466
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=48.18 E-value=49 Score=36.00 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=22.3
Q ss_pred ccccccCChhhHHHHHhcCCCCCeeEEEEec
Q 011618 149 GMYFSAKDKGEMMSMIYNWPAQQVDMIVLTD 179 (481)
Q Consensus 149 Glyis~~d~g~i~~~l~nwp~~~v~viVVTD 179 (481)
|.|.+..|...+.++|... ++++.++.|
T Consensus 176 g~~~~~~D~~elk~lL~~~---Gl~v~~l~d 203 (461)
T TIGR02931 176 TGWVNPGDVKELKHLLEEM---DIEANVLFE 203 (461)
T ss_pred CCCCChhhHHHHHHHHHHc---CCceEEeec
Confidence 6677777888889999876 688888876
No 467
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=48.13 E-value=1.8e+02 Score=31.05 Aligned_cols=51 Identities=10% Similarity=-0.005 Sum_probs=35.3
Q ss_pred ccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCCccccccchhhhh
Q 011618 149 GMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDV 203 (481)
Q Consensus 149 Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~iGKl~L 203 (481)
|.| +..|...+.++|+.. +++++++.-|+.+=-|=..|....-|.++...-
T Consensus 166 G~~-~~~d~~ei~~lL~~~---Gl~~~~~l~~~~~~el~~~~~A~~~i~~~~~~~ 216 (416)
T cd01980 166 GEM-FPADPVAIGSVLERM---GLAAVPVVPTREWRELYAAGDAAAVAALHPFYT 216 (416)
T ss_pred ccC-CCCCHHHHHHHHHHc---CCceeeEeCCCCHHHHhhcccCcEEEEeChhHH
Confidence 433 355777899999876 677776555666666666776777777777655
No 468
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=48.01 E-value=16 Score=43.88 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=27.2
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
+.||+|+|||.||+..|..|... |. ++.++|..
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~-----Gh-------~Vtv~E~~ 415 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRS-----GH-------NVTAIDGL 415 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEccc
Confidence 38999999999999999998753 43 58888874
No 469
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.96 E-value=23 Score=37.72 Aligned_cols=48 Identities=27% Similarity=0.359 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 304 LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
|+--+-|+|..+.+..+ |+||+|||..|+.. ++++- .-|. ++|.++|-
T Consensus 155 LsV~~HAcr~~~vk~Gs----~vLV~GAGPIGl~t--~l~Ak---a~GA------~~VVi~d~ 202 (354)
T KOG0024|consen 155 LSVGVHACRRAGVKKGS----KVLVLGAGPIGLLT--GLVAK---AMGA------SDVVITDL 202 (354)
T ss_pred hhhhhhhhhhcCcccCC----eEEEECCcHHHHHH--HHHHH---HcCC------CcEEEeec
Confidence 66667899999999877 99999999987654 34332 1354 57887774
No 470
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=47.86 E-value=25 Score=37.87 Aligned_cols=91 Identities=19% Similarity=0.277 Sum_probs=58.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChh---hhccccccCCcCCcCCCCC
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPA---AAPFAKDPGDFMGLREGAS 399 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~---k~~fA~~~~~~~~~~~~~~ 399 (481)
.+||++|||-.|..||..|.+- |- .+|++.|+. .+. ..+... +...+.-+ ..+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD-----~~d~~a 61 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVD-----AADVDA 61 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEec-----ccChHH
Confidence 4899999999999999998763 31 479988883 111 011111 11222111 023456
Q ss_pred HHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEE
Q 011618 400 LLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAI 440 (481)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPII 440 (481)
|.++|+. .++.|.+- |+-++..++++-.+ +.-+.|
T Consensus 62 l~~li~~--~d~VIn~~--p~~~~~~i~ka~i~--~gv~yv 96 (389)
T COG1748 62 LVALIKD--FDLVINAA--PPFVDLTILKACIK--TGVDYV 96 (389)
T ss_pred HHHHHhc--CCEEEEeC--CchhhHHHHHHHHH--hCCCEE
Confidence 9999999 59998765 78889999987654 344444
No 471
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=47.83 E-value=40 Score=29.73 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=44.4
Q ss_pred CCCccccccchhhhhhhhhcCCCCCceecEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEE
Q 011618 189 LGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIV 268 (481)
Q Consensus 189 lG~~Gm~I~iGKl~LY~a~gGI~P~~~LPV~LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~~I 268 (481)
.|.+|-...--+..+-......+|+. |+|-+||| |.++ +.+-++|.+-+++|++.++..+|++.|
T Consensus 18 ~g~~G~~~~~~~~~~~~~~~~~~pd~---vvi~~G~N------D~~~------~~~~~~~~~~~~~~i~~i~~~~p~~~i 82 (157)
T cd01833 18 EGHSGYLIDQIAAAAADWVLAAKPDV---VLLHLGTN------DLVL------NRDPDTAPDRLRALIDQMRAANPDVKI 82 (157)
T ss_pred CCCCCccHHHHHHHhhhccccCCCCE---EEEeccCc------cccc------CCCHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 34445555554544434445556543 46788997 4333 256789999999999999999998744
Q ss_pred Ee
Q 011618 269 QF 270 (481)
Q Consensus 269 qf 270 (481)
-|
T Consensus 83 i~ 84 (157)
T cd01833 83 IV 84 (157)
T ss_pred EE
Confidence 43
No 472
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=47.73 E-value=39 Score=37.42 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=63.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~e~ 403 (481)
.+|-|+|-|..|.++|.-|+.. |. ++.++|+. .++ ..+....++..... ......|+.|+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k--~~~l~~~~~~~Ga~--~~~~a~s~~e~ 66 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK--VDETVERAKKEGNL--PLYGFKDPEDF 66 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH--HHHHHHhhhhcCCc--ccccCCCHHHH
Confidence 4699999999999999998754 53 57777762 211 22222112111100 00124679999
Q ss_pred hccc-CCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 404 VRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 404 V~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
++.+ +|+++|= +=..+.-.++|+..+.....+.-||.=+||=.+
T Consensus 67 v~~l~~~dvIi~-~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~ 111 (493)
T PLN02350 67 VLSIQKPRSVII-LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWY 111 (493)
T ss_pred HhcCCCCCEEEE-ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 9754 4888883 333466667777655443456779999998665
No 473
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=47.57 E-value=78 Score=33.32 Aligned_cols=107 Identities=20% Similarity=0.288 Sum_probs=61.4
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecC-CCCCChhhhccccccCCcCCcCCCCCHH
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLL 401 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~-r~~l~~~k~~fA~~~~~~~~~~~~~~L~ 401 (481)
..||.|+|+|..|+++|-.|+.- |++ +++.++|-.-=-.++ .-+|.+ -.+|-+..+-. ..++..
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MDLqH-~s~f~~~~~V~----~~~Dy~ 84 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMDLQH-GSAFLSTPNVV----ASKDYS 84 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhhhcc-ccccccCCceE----ecCccc
Confidence 48999999999999999888753 554 578899964211111 123432 23444432210 011121
Q ss_pred HHhcccCCcEEEeecCC---CCC-----------CCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 402 EVVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 402 e~V~~vkptvLIG~S~~---~g~-----------Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
. -. .-++.|=+.+. +|- .=+.+|.++.+ +.+.-|+.-.|||..
T Consensus 85 ~-sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~-ySpd~~llvvSNPVD 141 (332)
T KOG1495|consen 85 V-SA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVK-YSPDCILLVVSNPVD 141 (332)
T ss_pred c-cC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-cCCCeEEEEecCchH
Confidence 1 11 23455433332 121 22456666654 889999999999986
No 474
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=47.46 E-value=18 Score=36.87 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=54.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhh--ccccccCCcCC-cCCCCCH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA--PFAKDPGDFMG-LREGASL 400 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~--~fA~~~~~~~~-~~~~~~L 400 (481)
.||.|+|+|+.|.++|..|..+ | .++.++|+..=- .+.+....+ .+. +...... .....++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~~~~---~~~i~~~~~~~~~~-~g~~~~~~~~~~~~~ 68 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARRPEF---AAALAAERENREYL-PGVALPAELYPTADP 68 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCCHHH---HHHHHHhCcccccC-CCCcCCCCeEEeCCH
Confidence 5899999999999999998764 4 247777773110 011111000 000 0000000 0123468
Q ss_pred HHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCC
Q 011618 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (481)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNP 446 (481)
.|+++. .|++|=+- +....+++++.+. +..+|+-++|.
T Consensus 69 ~e~~~~--aD~Vi~~v--~~~~~~~v~~~l~----~~~~vi~~~~G 106 (328)
T PRK14618 69 EEALAG--ADFAVVAV--PSKALRETLAGLP----RALGYVSCAKG 106 (328)
T ss_pred HHHHcC--CCEEEEEC--chHHHHHHHHhcC----cCCEEEEEeec
Confidence 888876 67776332 2334588887763 33466667886
No 475
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=47.43 E-value=18 Score=34.94 Aligned_cols=56 Identities=23% Similarity=0.405 Sum_probs=39.4
Q ss_pred hhhhhcCCCCCceecEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHHhCCce-EEEeecCCCchH
Q 011618 203 VYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQFEDFQMKWA 278 (481)
Q Consensus 203 LY~a~gGI~P~~~LPV~LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~~~P~~-~IqfEDf~~~na 278 (481)
+-...+.+++ .+ ++||+|.| .+.++|.+-++.||+.+++.-|.+ +|-.|.+..++.
T Consensus 51 ~a~~ia~~~a-~~--~~ld~~~N-----------------~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~ 107 (178)
T PF14606_consen 51 VADLIAEIDA-DL--IVLDCGPN-----------------MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAG 107 (178)
T ss_dssp HHHHHHHS---SE--EEEEESHH-----------------CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTT
T ss_pred HHHHHhcCCC-CE--EEEEeecC-----------------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcccc
Confidence 3455678875 44 48999987 466899999999999999999998 888888876654
No 476
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=47.42 E-value=39 Score=34.34 Aligned_cols=41 Identities=24% Similarity=0.432 Sum_probs=30.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccee
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 370 (481)
++|+|+|+|.+|+-+|..|..... +.|. +.+|.+++...++
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~-~~g~-----~~~V~li~~~~~l 186 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLP-KRGL-----RGQVTLIAGASLL 186 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHH-hcCC-----CceEEEEeCCccc
Confidence 699999999999999999987665 3453 2478888544443
No 477
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=47.26 E-value=48 Score=33.24 Aligned_cols=118 Identities=19% Similarity=0.264 Sum_probs=73.2
Q ss_pred cCCCCCceecEEeeccCCccccccCcccccccccCCChhhhhHhHHHHHHHHHH--hCCce-EEEeecCCCchHHH-HHH
Q 011618 208 AGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHA--RWPKA-IVQFEDFQMKWAFE-TLE 283 (481)
Q Consensus 208 gGI~P~~~LPV~LDvGTnN~~LL~Dp~YlG~r~~R~~g~~Y~~~vdefv~av~~--~~P~~-~IqfEDf~~~naf~-iL~ 283 (481)
-||. .+|+.+-+| ++.++++ . +--.|+|.+.+++ ..|+. ....+|| .++|+ +++
T Consensus 19 ~~I~---vvPl~I~~~--~~~y~D~-------------~--~i~~~~~y~~~~~~~~~p~TS~ps~~~~--~~~~~~l~~ 76 (275)
T TIGR00762 19 YGIT---VVPLTVIID--GKTYRDG-------------V--DITPEEFYEKLKESKELPKTSQPSPGEF--LELYEKLLE 76 (275)
T ss_pred cCCE---EEEEEEEEC--CEEeecC-------------C--CCCHHHHHHHHHhcCCCCCcCCCCHHHH--HHHHHHHHh
Confidence 3777 999999885 3333332 1 1235777777764 24654 5555555 33332 333
Q ss_pred HHhhcCCccccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCccHHHHHHHHHHHHH--HHHHcCCChhhhc
Q 011618 284 RYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA--AARMAGNNDAFAR 358 (481)
Q Consensus 284 ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~--~~~~~Gls~eeA~ 358 (481)
+| +++-++ |=+-.|+|-+++.+...+.+.+ .+|-++=..+++.|.+.++..+ |. ++|.|.+|..
T Consensus 77 ~~-~~vi~i------~iSs~lSgty~~a~~aa~~~~~---~~i~ViDS~~~s~~~g~~v~~a~~~~-~~G~s~~eI~ 142 (275)
T TIGR00762 77 EG-DEVLSI------HLSSGLSGTYQSARQAAEMVDE---AKVTVIDSKSASMGLGLLVLEAAKLA-EEGKSLEEIL 142 (275)
T ss_pred CC-CeEEEE------EcCCchhHHHHHHHHHHhhCCC---CCEEEECChHHHHHHHHHHHHHHHHH-HcCCCHHHHH
Confidence 33 233222 2233467777777777666666 7899999999998888888775 44 6899998853
No 478
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=47.22 E-value=46 Score=39.10 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=66.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHH---HHHHcCCChhhhcCeEEEEeccceeecCCC-CCChhhhccccccCCcCCcCCCCC
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA---AARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGAS 399 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~---~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~-~l~~~k~~fA~~~~~~~~~~~~~~ 399 (481)
.+|.++|-|..|.|++++|.+- +.++.|+.. +=.-++|+++.+.+.+. ++......+...... .+...
T Consensus 459 i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~----~~~~~ 530 (810)
T PRK09466 459 IGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDGLDASRALAFFDDEAVE----WDEES 530 (810)
T ss_pred EEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccCCCHHHHHhhHHhhcCC----ccHHH
Confidence 7899999999999999999874 222335432 22446799888777653 222222223222111 12344
Q ss_pred HHHHhcccCCc--EEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCC
Q 011618 400 LLEVVRKVKPH--VLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (481)
Q Consensus 400 L~e~V~~vkpt--vLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNP 446 (481)
+.|.+....++ |+|=+++ +.-....+.+++. +...||- +|=
T Consensus 531 ~~e~i~~~~~~~~vvVd~t~-~~~~~~~~~~aL~---~G~~VVt--aNK 573 (810)
T PRK09466 531 LFLWLRAHPYDELVVLDVTA-SEQLALQYPDFAS---HGFHVIS--ANK 573 (810)
T ss_pred HHHHHhhcCCCCcEEEECCC-ChHHHHHHHHHHH---cCCEEEc--CCc
Confidence 67777765564 8888886 3334566777774 4666775 554
No 479
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=46.86 E-value=43 Score=33.56 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=21.8
Q ss_pred EeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 328 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 328 ~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
|+|.|..|..+|..|... | .+++++|++
T Consensus 1 ~IGlG~mG~~mA~~L~~~-----G-------~~V~v~dr~ 28 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-----G-------HPVRVFDLF 28 (288)
T ss_pred CCcccHhHHHHHHHHHhC-----C-------CeEEEEeCC
Confidence 689999999999988753 4 257777764
No 480
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=46.85 E-value=17 Score=38.88 Aligned_cols=32 Identities=28% Similarity=0.550 Sum_probs=25.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
--++|+|||+||+..|..+.+ .| .++.++|+.
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~-----~G-------~~V~liE~~ 34 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAE-----HG-------AKALLVEAK 34 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CC-------CcEEEeccc
Confidence 469999999999999988655 35 368889975
No 481
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=46.83 E-value=41 Score=33.86 Aligned_cols=20 Identities=35% Similarity=0.775 Sum_probs=15.7
Q ss_pred ceEEEeCccHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAV 343 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~ 343 (481)
++++|.|+|+.|...+.+..
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~ 181 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAV 181 (347)
T ss_pred CEEEEECCCHHHHHHHHHHH
Confidence 79999999998877665444
No 482
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=46.77 E-value=27 Score=37.88 Aligned_cols=34 Identities=15% Similarity=0.344 Sum_probs=26.7
Q ss_pred CceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
+++|||+|+|..|+-||..|.... ++++++-+.+
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a------------~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVA------------KEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhC------------CeEEEEEeec
Confidence 399999999999999999887541 4677666554
No 483
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=46.74 E-value=15 Score=37.87 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=17.8
Q ss_pred ceEEEeCccHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQ 344 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (481)
.+|+|+|||.+|+..|-.|..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~ 22 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ 22 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc
Confidence 369999999999999977753
No 484
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=46.66 E-value=18 Score=38.87 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=25.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
-.|+|+|||+||+..|..+.+. | +++.++|++
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~-----G-------~~V~liE~~ 35 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQL-----G-------LKVACVEGR 35 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 4699999999999999886653 4 478999974
No 485
>PRK06849 hypothetical protein; Provisional
Probab=46.18 E-value=11 Score=39.14 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=46.5
Q ss_pred CceEEEeCccH-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCCCCCChhhhccccccCCcCCcCCCCCHH
Q 011618 323 DQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLL 401 (481)
Q Consensus 323 ~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~l~~~k~~fA~~~~~~~~~~~~~~L~ 401 (481)
.++|+|.|++. .|+++|+.+..+ |. +++++|++..-.. + ......+.|.-+.+......-...|.
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~-----G~-------~Vi~~d~~~~~~~-~-~s~~~d~~~~~p~p~~d~~~~~~~L~ 69 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNA-----GH-------TVILADSLKYPLS-R-FSRAVDGFYTIPSPRWDPDAYIQALL 69 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-----CC-------EEEEEeCCchHHH-H-HHHhhhheEEeCCCCCCHHHHHHHHH
Confidence 38999999987 688888877654 53 7999998631100 0 00000111111111100000024588
Q ss_pred HHhcccCCcEEEeecC
Q 011618 402 EVVRKVKPHVLLGLSG 417 (481)
Q Consensus 402 e~V~~vkptvLIG~S~ 417 (481)
++++.-++|++|=++.
T Consensus 70 ~i~~~~~id~vIP~~e 85 (389)
T PRK06849 70 SIVQRENIDLLIPTCE 85 (389)
T ss_pred HHHHHcCCCEEEECCh
Confidence 8999999999998775
No 486
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.08 E-value=18 Score=38.66 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.5
Q ss_pred CceEEEeCccHHHHHHHHHHHHH
Q 011618 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
..||+|+|.|-.|+++|+.|...
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~ 36 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKL 36 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHC
Confidence 37999999999999999998764
No 487
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=45.94 E-value=20 Score=37.51 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (481)
.+|+|+|||-||+..|..|.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~ 24 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKE 24 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhc
Confidence 6899999999999999988764
No 488
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=45.78 E-value=19 Score=37.87 Aligned_cols=34 Identities=44% Similarity=0.592 Sum_probs=25.3
Q ss_pred EEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccee
Q 011618 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (481)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 370 (481)
|||+|+|.||+..|-.+.+ .|. .++.++++....
T Consensus 2 VvVVG~G~AGl~AA~~aa~-----~G~------~~V~vlEk~~~~ 35 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKK-----AGA------ANVVLLEKMPVI 35 (439)
T ss_pred EEEECCCHHHHHHHHHHHH-----cCC------ccEEEEecCCCC
Confidence 8999999999999876543 350 258888887653
No 489
>PLN02240 UDP-glucose 4-epimerase
Probab=45.74 E-value=29 Score=34.77 Aligned_cols=103 Identities=22% Similarity=0.337 Sum_probs=55.2
Q ss_pred CCceEEEeCc-cHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCChh------hhccccccCCcCC
Q 011618 322 ADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPA------AAPFAKDPGDFMG 393 (481)
Q Consensus 322 ~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~~------k~~fA~~~~~~~~ 393 (481)
+..+|+|.|| |-.|..+++.|.+. | .+++.+|+..--.... ..+... ...+.. .+
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~-----g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~D--- 66 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLA-----G-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHK--VD--- 66 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC-----C-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEe--cC---
Confidence 3489999997 88888888887653 4 3688887542100000 000000 001111 00
Q ss_pred cCCCCCHHHHhcccCCcEEEeecCCCCC----------------CCHHHHHHhhhcCCCCCEEEe
Q 011618 394 LREGASLLEVVRKVKPHVLLGLSGVGGV----------------FNEEVLKAMRESDSVKPAIFA 442 (481)
Q Consensus 394 ~~~~~~L~e~V~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~~erPIIFa 442 (481)
..+..++.++++..++|++|=+.+.... -+..+++.|.+ .+-+.+||.
T Consensus 67 ~~~~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~~v~~ 130 (352)
T PLN02240 67 LRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAK-HGCKKLVFS 130 (352)
T ss_pred cCCHHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHH-cCCCEEEEE
Confidence 1123457777777789999977664321 12345666643 444678874
No 490
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.69 E-value=18 Score=38.39 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=18.8
Q ss_pred eEEEeCccHHHHHHHHHHHHH
Q 011618 325 KIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (481)
||+|+|+|.+|+..|+.+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~ 22 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ 22 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC
Confidence 799999999999999888764
No 491
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=45.39 E-value=41 Score=36.01 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=53.7
Q ss_pred CCCceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccceeecCC-CCCCh-hhhccccccCCc--CCcCC
Q 011618 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDP-AAAPFAKDPGDF--MGLRE 396 (481)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~~l~~-~k~~fA~~~~~~--~~~~~ 396 (481)
|.+.|++|+|-.....++++.|.+ .|+. +.. +++... +.+.+ .++..++...+. ....+
T Consensus 298 l~gkrv~v~g~~~~~~~l~~~L~e-----lG~~-------~~~-----v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d 360 (429)
T cd03466 298 NFGRKAAIYGEPDFVVAITRFVLE-----NGMV-------PVL-----IATGSESKKLKEKLEEDLKEYVEKCVILDGAD 360 (429)
T ss_pred cCCCEEEEEcCHHHHHHHHHHHHH-----CCCE-------EEE-----EEeCCCChHHHHHHHHHHHhcCCceEEEeCCC
Confidence 344899999988888999888864 3652 111 122221 11111 111111111100 00113
Q ss_pred CCCHHHHhcccCCcEEEeecCCCCCCCHHHHHHhhhcCCCCCEEEecCCCCC
Q 011618 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (481)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~~erPIIFaLSNPt~ 448 (481)
...+++.++..+||++||-|. .+.+-+.| .-|.| ..+.|..
T Consensus 361 ~~e~~~~l~~~~~dliiG~s~-----~~~~a~~~-----~ip~~-~~~~P~~ 401 (429)
T cd03466 361 FFDIESYAKELKIDVLIGNSY-----GRRIAEKL-----GIPLI-RIGFPIH 401 (429)
T ss_pred HHHHHHHHHhcCCCEEEECch-----hHHHHHHc-----CCCEE-EecCCce
Confidence 345888889999999999774 23444444 45764 4565654
No 492
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=45.31 E-value=20 Score=38.35 Aligned_cols=33 Identities=33% Similarity=0.594 Sum_probs=25.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
++|+|+|||-+|+..|-.|..+ |. ++.+++++.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-----G~-------~v~vlE~~~ 34 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-----GY-------RVTLLEQHA 34 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 7899999999999999888654 53 466666653
No 493
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.30 E-value=21 Score=38.68 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=21.2
Q ss_pred CCCceEEEeCccHHHHHHHHHHHHH
Q 011618 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (481)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~ 345 (481)
++..+|+|+|.|-+|+++|++|...
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~ 29 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARH 29 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHC
Confidence 4457999999999999998888764
No 494
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=45.21 E-value=15 Score=39.33 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHHH
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAA 346 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~ 346 (481)
.+++++|.|++|+|+|..+..-+
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl 62 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKL 62 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhc
Confidence 89999999999999999987754
No 495
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=45.12 E-value=50 Score=34.84 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=26.1
Q ss_pred ceEEEeC-ccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 324 QKIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 324 ~riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
.+|.|+| +|..|-.+|..+..+ |. .++++|++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 6899999 999999999988764 42 47888874
No 496
>PRK07121 hypothetical protein; Validated
Probab=45.02 E-value=19 Score=38.71 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=26.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccce
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 369 (481)
..|||+|+|.||+..|-.+.+ .| .++.++++...
T Consensus 21 ~DVvVVGaG~AGl~AA~~aae-----~G-------~~VillEK~~~ 54 (492)
T PRK07121 21 ADVVVVGFGAAGACAAIEAAA-----AG-------ARVLVLERAAG 54 (492)
T ss_pred cCEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeCCCC
Confidence 679999999999999866553 35 36888887654
No 497
>PRK06116 glutathione reductase; Validated
Probab=44.94 E-value=19 Score=38.16 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=25.6
Q ss_pred eEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
-++|+|||.||+..|..+.+. | .++.++|+.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~-----G-------~~V~liE~~ 36 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMY-----G-------AKVALIEAK 36 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEecc
Confidence 599999999999998887653 4 478999985
No 498
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=44.58 E-value=42 Score=34.45 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=21.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 366 (481)
++++|+|+|+.|...+.+... .|. ++++.+|+
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~-----~G~------~~Vi~~~~ 218 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARM-----AKA------SRIIAIDI 218 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHH-----cCC------CeEEEEcC
Confidence 799999998777766554432 342 35776665
No 499
>PLN02661 Putative thiazole synthesis
Probab=44.52 E-value=21 Score=38.12 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=23.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 011618 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (481)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 368 (481)
..|+|+|||.||+..|..+... .| .++.++|+..
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~----~g-------~kV~viEk~~ 126 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKN----PN-------VKVAIIEQSV 126 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHc----CC-------CeEEEEecCc
Confidence 6789999999988888777631 13 2566777653
No 500
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=44.47 E-value=32 Score=29.03 Aligned_cols=30 Identities=23% Similarity=0.544 Sum_probs=23.6
Q ss_pred EEEeCccHHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 011618 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (481)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 367 (481)
|||+|.|..|..+++.|.+. + .++.++|++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-----~-------~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-----G-------IDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-----T-------SEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhC-----C-------CEEEEEECC
Confidence 79999999999999888752 2 479999885
Done!