Your job contains 1 sequence.
>011620
MEEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ
ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV
FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP
GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL
PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR
YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRI
KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI
HRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSDILQRKTRLQKSKSRLRHKNYA
L
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011620
(481 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2130839 - symbol:RH1 "RNA helicase 1" species:... 1730 3.5e-178 1
UNIPROTKB|E2R5R1 - symbol:DDX51 "Uncharacterized protein"... 733 1.6e-72 1
UNIPROTKB|F1MGC9 - symbol:DDX51 "Uncharacterized protein"... 726 8.6e-72 1
UNIPROTKB|Q8N8A6 - symbol:DDX51 "ATP-dependent RNA helica... 720 3.7e-71 1
ZFIN|ZDB-GENE-040927-28 - symbol:ddx51 "DEAD (Asp-Glu-Ala... 717 7.7e-71 1
UNIPROTKB|E1BUI4 - symbol:DDX51 "Uncharacterized protein"... 711 3.3e-70 1
RGD|1309580 - symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box po... 710 4.3e-70 1
MGI|MGI:1916913 - symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) bo... 708 7.0e-70 1
ASPGD|ASPL0000059362 - symbol:AN0637 species:162425 "Emer... 237 4.6e-54 3
FB|FBgn0004556 - symbol:Dbp73D "Dead box protein 73D" spe... 557 7.0e-54 1
POMBASE|SPCC285.03 - symbol:SPCC285.03 "ATP-dependent RNA... 495 2.6e-47 1
UNIPROTKB|G4N9X9 - symbol:MGG_03229 "ATP-dependent RNA he... 226 1.1e-43 3
DICTYBASE|DDB_G0293740 - symbol:ddx51 "DEAD/DEAH box heli... 435 5.9e-41 1
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 248 4.7e-40 3
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 252 4.0e-39 3
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 252 5.2e-39 3
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 238 2.3e-38 3
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 236 3.4e-38 3
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 251 8.5e-38 3
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 248 1.0e-37 3
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 245 1.9e-37 3
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 247 3.8e-37 3
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 244 7.0e-37 3
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 244 1.2e-36 3
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 244 1.3e-36 3
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 230 2.3e-36 3
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 230 2.3e-36 3
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ... 216 2.3e-36 4
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 237 3.9e-35 3
RGD|1311124 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box po... 241 4.6e-35 3
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"... 220 6.2e-35 3
UNIPROTKB|F1S7D9 - symbol:DDX49 "Uncharacterized protein"... 241 1.3e-34 3
UNIPROTKB|E2RBM7 - symbol:DDX49 "Uncharacterized protein"... 239 2.5e-34 3
MGI|MGI:2136689 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) bo... 239 2.8e-34 3
UNIPROTKB|F1NYX0 - symbol:DDX49 "Uncharacterized protein"... 220 3.3e-34 3
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 237 3.4e-34 3
UNIPROTKB|Q9Y6V7 - symbol:DDX49 "Probable ATP-dependent R... 235 7.2e-34 3
ZFIN|ZDB-GENE-031030-3 - symbol:ddx49 "DEAD (Asp-Glu-Ala-... 226 9.2e-33 3
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli... 230 3.1e-32 3
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 253 6.0e-32 2
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 268 1.5e-31 2
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 268 1.5e-31 2
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 268 1.6e-31 2
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 261 2.7e-31 2
UNIPROTKB|I3LQ10 - symbol:LOC100626268 "Uncharacterized p... 230 2.8e-31 2
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 268 3.2e-31 2
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 266 3.5e-31 2
TAIR|locus:2087832 - symbol:PMH1 "putative mitochondrial ... 222 9.5e-31 3
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 233 1.0e-30 3
UNIPROTKB|E2RFA3 - symbol:DDX18 "Uncharacterized protein"... 212 1.1e-30 3
UNIPROTKB|F1N533 - symbol:DDX18 "Uncharacterized protein"... 204 1.4e-30 3
UNIPROTKB|F1MSX0 - symbol:F1MSX0 "Uncharacterized protein... 204 1.4e-30 3
UNIPROTKB|D4A824 - symbol:Ddx18 "Protein Ddx18" species:1... 201 2.2e-30 3
RGD|1549712 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box po... 201 2.5e-30 3
MGI|MGI:1914192 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) bo... 201 2.8e-30 3
UNIPROTKB|Q8EI96 - symbol:srmB "ATP-dependent RNA helicas... 180 3.5e-30 3
TIGR_CMR|SO_0947 - symbol:SO_0947 "ATP-dependent RNA heli... 180 3.5e-30 3
TAIR|locus:2087852 - symbol:PMH2 "putative mitochondrial ... 223 4.0e-30 3
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 256 5.0e-30 2
UNIPROTKB|Q8EDC4 - symbol:SO_2838 "ATP-dependent RNA heli... 208 7.5e-30 3
TIGR_CMR|SO_2838 - symbol:SO_2838 "ATP-dependent RNA heli... 208 7.5e-30 3
UNIPROTKB|I3L840 - symbol:DDX18 "Uncharacterized protein"... 204 1.4e-29 3
UNIPROTKB|F1RY13 - symbol:DDX18 "Uncharacterized protein"... 204 1.5e-29 3
UNIPROTKB|I3L7B7 - symbol:DDX18 "Uncharacterized protein"... 204 1.8e-29 3
ZFIN|ZDB-GENE-030131-9685 - symbol:ddx18 "DEAD (Asp-Glu-A... 200 3.0e-29 3
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 231 3.3e-29 2
TAIR|locus:504955106 - symbol:emb1138 "embryo defective 1... 216 4.0e-29 2
UNIPROTKB|Q9NVP1 - symbol:DDX18 "ATP-dependent RNA helica... 201 4.2e-29 3
WB|WBGene00022148 - symbol:Y71G12B.8 species:6239 "Caenor... 252 5.6e-29 2
UNIPROTKB|E1BII7 - symbol:DDX43 "Uncharacterized protein"... 237 5.6e-29 3
RGD|621743 - symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box pol... 216 9.6e-29 3
UNIPROTKB|G3MYF0 - symbol:LOC100300937 "Uncharacterized p... 230 1.0e-28 3
CGD|CAL0001062 - symbol:orf19.3704 species:5476 "Candida ... 338 1.1e-28 1
MGI|MGI:1925644 - symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) bo... 218 1.1e-28 3
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 247 1.2e-28 2
UNIPROTKB|E2R316 - symbol:DDX55 "Uncharacterized protein"... 208 1.3e-28 2
ZFIN|ZDB-GENE-060623-1 - symbol:ddx52 "DEAD (Asp-Glu-Ala-... 216 1.7e-28 3
FB|FBgn0010220 - symbol:Dbp45A "DEAD box protein 45A" spe... 169 2.0e-28 3
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 237 2.1e-28 2
UNIPROTKB|F1P8J6 - symbol:DDX55 "Uncharacterized protein"... 208 3.1e-28 2
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 248 4.3e-28 2
UNIPROTKB|I3LJA0 - symbol:DDX52 "Uncharacterized protein"... 212 4.3e-28 3
UNIPROTKB|F1NTK9 - symbol:DDX54 "Uncharacterized protein"... 211 4.3e-28 3
UNIPROTKB|A8MTP9 - symbol:DDX52 "Probable ATP-dependent R... 212 4.3e-28 3
UNIPROTKB|F1RFL5 - symbol:DDX55 "Uncharacterized protein"... 211 4.7e-28 2
MGI|MGI:1915098 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) bo... 211 7.5e-28 2
UNIPROTKB|Q47Z59 - symbol:CPS_3215 "Putative ATP-dependen... 181 7.6e-28 3
TIGR_CMR|CPS_3215 - symbol:CPS_3215 "putative ATP-depende... 181 7.6e-28 3
UNIPROTKB|F1NEQ3 - symbol:DDX18 "Uncharacterized protein"... 196 9.9e-28 3
UNIPROTKB|Q9Y2R4 - symbol:DDX52 "Probable ATP-dependent R... 212 1.5e-27 3
POMBASE|SPBC543.06c - symbol:dbp8 "ATP-dependent RNA heli... 200 1.6e-27 3
RGD|2324094 - symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box po... 215 1.8e-27 2
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas... 192 2.1e-27 3
UNIPROTKB|Q8NHQ9 - symbol:DDX55 "ATP-dependent RNA helica... 208 2.1e-27 2
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 214 2.2e-27 3
UNIPROTKB|Q9KNA4 - symbol:VC_A0061 "ATP-dependent RNA hel... 195 2.5e-27 3
TIGR_CMR|VC_A0061 - symbol:VC_A0061 "ATP-dependent RNA he... 195 2.5e-27 3
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 206 2.5e-27 2
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 206 2.5e-27 2
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 210 4.4e-27 3
WARNING: Descriptions of 752 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2130839 [details] [associations]
symbol:RH1 "RNA helicase 1" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0006626 "protein
targeting to mitochondrion" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=TAS] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 GO:GO:0017151 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z97339 GO:GO:0008026 eggNOG:COG0513
PROSITE:PS51195 EMBL:AL161542 KO:K14807 HOGENOM:HOG000239572
OMA:CSKTELE EMBL:Y11187 EMBL:Y11154 IPI:IPI00538787 PIR:A71424
PIR:E85175 RefSeq:NP_193320.6 UniGene:At.33
ProteinModelPortal:Q7FGZ2 SMR:Q7FGZ2 STRING:Q7FGZ2 PaxDb:Q7FGZ2
PRIDE:Q7FGZ2 EnsemblPlants:AT4G15850.1 GeneID:827266
KEGG:ath:AT4G15850 GeneFarm:907 TAIR:At4g15850 InParanoid:Q7FGZ2
Genevestigator:Q7FGZ2 GermOnline:AT4G15850 Uniprot:Q7FGZ2
Length = 522
Score = 1730 (614.0 bits), Expect = 3.5e-178, P = 3.5e-178
Identities = 336/443 (75%), Positives = 386/443 (87%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
+E K + V+PWMR+PVDVS E+C LD LPCL+P+LK AL+NMGISSLFPVQVAVW E
Sbjct: 5 KEDKTEMDSVVPWMRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVWHE 64
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
TIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRALVVLPTRDLALQVKDVF
Sbjct: 65 TIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVF 124
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181
AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SAVDILVATPG
Sbjct: 125 DAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPG 184
Query: 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241
RLMDHIN T+GFTLEHL YLVVDETDRLLREAYQ+WLPTVLQLT++ +++ F + F+P
Sbjct: 185 RLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVP 244
Query: 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301
SAFGSL+T+RR VERGFK KPYPRLVKMVLSATLTQDP+KL QLDLHHPLF+TTG +RY
Sbjct: 245 SAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRY 304
Query: 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361
+LPE+LE +LICE+ +KP+YLVALL+S EKCI+FTSSVE+T RLC LLN FG+ +IK
Sbjct: 305 RLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIK 364
Query: 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421
KEYSG QS+RSK LKAFR+G IQVLV+SDA+TRGMDV+GV NV+NYD P + KT+IH
Sbjct: 365 AKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIH 424
Query: 422 RAGRTARAGQLGRCFTLLHKDEV 444
RAGRTARAGQ GRCFTLL EV
Sbjct: 425 RAGRTARAGQAGRCFTLLSNHEV 447
>UNIPROTKB|E2R5R1 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141
CTD:317781 EMBL:AAEX03014583 RefSeq:XP_543351.2
Ensembl:ENSCAFT00000010222 GeneID:486226 KEGG:cfa:486226
Uniprot:E2R5R1
Length = 631
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 188/465 (40%), Positives = 263/465 (56%)
Query: 7 KSMPVLP-WMRSPVDV--SLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-- 60
K+ P LP W+ P V S+ ED P++ +P + P ++ LQ GISS FPVQ AV
Sbjct: 137 KAQPFLPLWLAEPSSVGKSVTEDLVPIEDIPEVHPDMQKKLQAHGISSYFPVQAAVIPTL 196
Query: 61 -ETIGPG-LFER------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
E+I G L R DLC+++PTGSGKTL++ +P+VQ L RAV +RALVVLPT++
Sbjct: 197 LESIANGFLVARGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLCRAVCQVRALVVLPTKE 256
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+ E L+++ + +
Sbjct: 257 LAQQVSKVFNIYTDATPLRVALITGQKSLVKEQESLVQK-------------TVDGFRCL 303
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT-RSDNEN 231
D++VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+WLP V++ SD N
Sbjct: 304 ADVVVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQSWLPRVVEAAFPSDVAN 363
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
D L L+ + P L K++ SATLTQ+P KL QL L+ P
Sbjct: 364 ---DPFALLQRR--QLQATTAASISC-----PQMPLQKLLFSATLTQNPEKLQQLGLYQP 413
Query: 292 -LFLT------------TGET--RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
LF T GE+ +Y P L + + C + KPL ++ L+ + +
Sbjct: 414 RLFSTGLAGRGPRDIDRDGESGGKYTFPTGLSHHYVPCSLRTKPLAILHLILERNFSRVL 473
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
FT+S E++HRL L+ FG + E+S R R LK F +GKIQ+L+S+DAM
Sbjct: 474 CFTNSRENSHRLFLLVQAFGG--VAAAEFSSRCRPGQRKVVLKQFEQGKIQLLISTDAMA 531
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 532 RGIDVQGVQLVINYDAPQYLRTYVHRVGRTARAGRTGQAFTLLLK 576
>UNIPROTKB|F1MGC9 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:DAAA02044956 IPI:IPI01003566 ProteinModelPortal:F1MGC9
Ensembl:ENSBTAT00000022893 Uniprot:F1MGC9
Length = 546
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 183/466 (39%), Positives = 258/466 (55%)
Query: 7 KSMPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAV---- 58
K P LP W+ P V ++ E P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 50 KVQPFLPVWLAQPSCVGKNVTEGLVPIEDIPEVHPDLQKKLRAQGISSYFPVQAAVIPAV 109
Query: 59 WQETIGPGLFER------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
+ T L R DLC+++PTGSGKTL++ +P+VQ L +RAV +RALVVLPT++
Sbjct: 110 LESTANGFLVSRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLHRAVCQVRALVVLPTKE 169
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L++ K G +
Sbjct: 170 LAQQVSKVFNVYTDATPLRVALITGQKSLAKEQESLVQ--KTADGF-----------RCL 216
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+HL +L++DE DR++ +Q+WLP V+ +E
Sbjct: 217 ADIMVATPGRLVDHIDQTPGFSLQHLRFLIIDEADRMIDSMHQSWLPRVVAAA-FPSEGP 275
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
+ F + L C P L K++ SATLTQ+P KL QL L+ P
Sbjct: 276 RDPCAVFQRTQPRVLTAASMCC--------PQMPLQKLLFSATLTQNPEKLQQLGLYQPR 327
Query: 293 FLTTGET-----------------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
+TG +Y P L+ + + C + KPL ++ L+ + +
Sbjct: 328 LFSTGSAHRGPSDPDIDVDEDSGGKYTFPTGLKHHYVPCSLRFKPLVILHLILEMNFSRV 387
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
+ FT+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DAM
Sbjct: 388 LCFTNSRENSHRLFLLVQAFGG--VTVAEFSSRYGPGQRKSILKQFEQGKIQLLISTDAM 445
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
RG+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 446 ARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQAFTLLLK 491
>UNIPROTKB|Q8N8A6 [details] [associations]
symbol:DDX51 "ATP-dependent RNA helicase DDX51"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 KO:K14807 OMA:HIDQTPG CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK097078 EMBL:AC138466 EMBL:BC012461 EMBL:BC040185
EMBL:CR936870 IPI:IPI00217541 RefSeq:NP_778236.2 UniGene:Hs.445168
ProteinModelPortal:Q8N8A6 SMR:Q8N8A6 IntAct:Q8N8A6 STRING:Q8N8A6
PhosphoSite:Q8N8A6 DMDM:229462978 PaxDb:Q8N8A6 PRIDE:Q8N8A6
Ensembl:ENST00000397333 GeneID:317781 KEGG:hsa:317781
UCSC:uc001ujy.4 GeneCards:GC12M132621 H-InvDB:HIX0018137
HGNC:HGNC:20082 HPA:HPA039503 neXtProt:NX_Q8N8A6
PharmGKB:PA134974036 InParanoid:Q8N8A6 PhylomeDB:Q8N8A6
GenomeRNAi:317781 NextBio:96442 Bgee:Q8N8A6 CleanEx:HS_DDX51
Genevestigator:Q8N8A6 GermOnline:ENSG00000185163 Uniprot:Q8N8A6
Length = 666
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 186/463 (40%), Positives = 260/463 (56%)
Query: 7 KSMPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-- 60
K P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 173 KVQPFLPRWLAEPNCVRRNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPAL 232
Query: 61 -ET------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
E+ +G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 233 LESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKE 292
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF A L V L GQ S+A E L++ K G Y +
Sbjct: 293 LAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQ--KTADG--Y---------RCL 339
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 340 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAA------- 392
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL 292
F P A L+ + V P L K++ SATLTQ+P KL QL LH P
Sbjct: 393 FQSEDPADPCAL--LQRRQAQAVTAASTCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPR 450
Query: 293 FLTTG-------ET-------RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338
+TG +T +Y P L + + C KPL ++ L+ +G + + F
Sbjct: 451 LFSTGLAHRGLEDTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCF 510
Query: 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398
T+S E++HRL L+ FG + + E+S R LK F +GKIQ+L+S+DA RG
Sbjct: 511 TNSRENSHRLFLLVQAFGG--VDVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARG 568
Query: 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
+DV+GV VVNYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 569 IDVQGVELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK 611
>ZFIN|ZDB-GENE-040927-28 [details] [associations]
symbol:ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
51" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040927-28 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
KO:K14807 EMBL:AY648772 IPI:IPI00500210 RefSeq:NP_001003864.1
UniGene:Dr.77952 ProteinModelPortal:Q6DRI7 STRING:Q6DRI7
PRIDE:Q6DRI7 GeneID:445387 KEGG:dre:445387 CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 InParanoid:Q6DRI7
OrthoDB:EOG4JM7PM NextBio:20832091 ArrayExpress:Q6DRI7
Uniprot:Q6DRI7
Length = 652
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 184/466 (39%), Positives = 254/466 (54%)
Query: 2 EEAKKKSMPVLP-WMRSPVDVSLFEDC-----PLDHLPCLDPRLKVALQNMGISSLFPVQ 55
E+ +K VLP W+ P DV + +D P+ +P + P L LQ GI S FPVQ
Sbjct: 159 EKDVQKVKRVLPQWLSQP-DV-IQKDIKSNLIPISEVPGICPTLLRKLQTNGIQSFFPVQ 216
Query: 56 VAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105
V E++G GL RD+C+++PTGSGKTL++ +P+VQ LS R VR +RAL
Sbjct: 217 AEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRAL 276
Query: 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165
VLPT++LA QV +VF+A L V + GQ S A E + L ++ G+ +
Sbjct: 277 AVLPTKELAQQVSNVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSH----- 328
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
S DI+VATPGRL+DHIN F+L+HL +L++DE DR++ +Q+WL V +
Sbjct: 329 -----SMADIVVATPGRLVDHINKNSSFSLQHLRFLIIDEADRMIDSMHQSWLSQVTKAV 383
Query: 226 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285
S + S F + G + P L K++ SATLTQ+P KL
Sbjct: 384 YSTPGE--THTSVFRRTVPGPITAASL--------SPPQIPLQKLLFSATLTQNPEKLQL 433
Query: 286 LDLHHP-LFLTT---------GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
LDLH P LF +T + + P+ L Y + C KPL ++ L L
Sbjct: 434 LDLHQPRLFSSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSPA 493
Query: 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
+ FT+S E HRL L+ FG +++ E+S R KTLK F +GKI +L+S+DA
Sbjct: 494 LCFTNSREGAHRLYLLVKLFGG--VEVAEFSSKLSPGERQKTLKDFEKGKIPLLISTDAA 551
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
RG+D+ GV V+NYD P YI+TYIHR GRTARAG+ G FT L K
Sbjct: 552 ARGIDINGVKCVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFLLK 597
>UNIPROTKB|E1BUI4 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:AADN02043240 IPI:IPI00601309 Ensembl:ENSGALT00000010245
Uniprot:E1BUI4
Length = 676
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 187/465 (40%), Positives = 258/465 (55%)
Query: 6 KKSMPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQV----A 57
+K P LP W+ P V + E+ P+ +P + P+L LQ GI S FPVQ A
Sbjct: 179 QKVQPFLPHWLAQPKLVQKRIKENLIPIRDVPGIHPKLLKKLQMNGIESFFPVQAEVIPA 238
Query: 58 VWQET-----IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
V Q +G G + +D+C+++PTGSGKTLS+ +PIVQ L +R V +RALVVLPT+
Sbjct: 239 VLQSASNGYLVGQGGYRPKDICVSAPTGSGKTLSFVIPIVQVLLDRVVCQVRALVVLPTK 298
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
+LA QV VF GL V L GQ S A E E++ + K+ G C S
Sbjct: 299 ELAQQVSKVFNIYTDGTGLKVVLITGQKSFAKE-QEMLVQKKV-TGYC-----------S 345
Query: 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
DI+VATPGRL DHI+ T GF+L L +L+VDE DR++ + +Q WL V++ EN
Sbjct: 346 LADIIVATPGRLADHISKTPGFSLTQLRFLIVDEADRMIDDMHQNWLNQVVKAA-FQAEN 404
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
F + G + C P L K++ SATLTQDP KL QL L P
Sbjct: 405 EAGSNMLFQRTKPGPVTAASCC--------YPQIPLQKLLFSATLTQDPEKLQQLGLFQP 456
Query: 292 -LF---------LTTG-------ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
LF L G E +Y LPE L + C+ KPL L+ + + +
Sbjct: 457 RLFTSVYSEKKTLRDGTETKEDCEEKYTLPEGLSQSYVPCDLNSKPLLLLHFMLTKKFTR 516
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+ FT+S E++HRL L+ FG I + E+S + R +T+K F +GKIQ+L+S+DA
Sbjct: 517 VLCFTNSREASHRLFLLVQAFGG--ITVAEFSSRLPPNERQRTMKEFEQGKIQLLISTDA 574
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
RG+D++GVN V+NYD P +I+TYIHR GRTARAG+ G F+++
Sbjct: 575 TARGIDIKGVNCVINYDTPQFIRTYIHRVGRTARAGKAGLAFSMV 619
>RGD|1309580 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309580 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:HIDQTPG OrthoDB:EOG4JM7PM IPI:IPI00371200
Ensembl:ENSRNOT00000056729 UCSC:RGD:1309580 ArrayExpress:D3ZQ94
Uniprot:D3ZQ94
Length = 635
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 185/467 (39%), Positives = 259/467 (55%)
Query: 7 KSMPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-- 60
K P LP W+ P V S+ ED P++ +P + P L+ L+ GISS FPVQ AV
Sbjct: 141 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGISSYFPVQAAVIPAL 200
Query: 61 -ET------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
E+ +G G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 201 LESADNGFLVGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKE 260
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF L V L GQ S+A E L++ K G C
Sbjct: 261 LAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQ--KTADGFC-----------CL 307
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 308 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVA--------- 358
Query: 233 FSDASTFLPSAFGSLKTIRRC---GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
A+ + GS ++R V P L K++ SATLTQ+P KL +L L+
Sbjct: 359 ---AAFYTEDPTGSCALLQRTQPQAVTAASTCIPQMPLQKLLFSATLTQNPEKLQRLGLY 415
Query: 290 HP-LFLT---------TGET-----RYKLPERLESYKLICESKLKPLYLVALLQSLGEEK 334
P LF T T E +Y P L + + C KPL + L+ + +
Sbjct: 416 QPRLFSTRLGHQSPRDTVEVDENLGKYTFPVGLTHHYVPCRLSSKPLIVFHLVLGMNFSR 475
Query: 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+ FT+S E++HRL L FG + + E+S R K LK F +GKIQ+L+S+DA
Sbjct: 476 ALCFTNSRENSHRLFLLAQAFGG--VSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDA 533
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
RG+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 534 TARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK 580
>MGI|MGI:1916913 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1916913 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141 CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK152599 EMBL:BC060646 IPI:IPI00396728 RefSeq:NP_081432.2
UniGene:Mm.392735 UniGene:Mm.5267 ProteinModelPortal:Q6P9R1
SMR:Q6P9R1 PhosphoSite:Q6P9R1 PaxDb:Q6P9R1 PRIDE:Q6P9R1
Ensembl:ENSMUST00000031478 GeneID:69663 KEGG:mmu:69663
UCSC:uc008yre.2 InParanoid:Q6P9R1 ChiTaRS:DDX51 NextBio:330022
Bgee:Q6P9R1 CleanEx:MM_DDX51 Genevestigator:Q6P9R1
GermOnline:ENSMUSG00000029504 Uniprot:Q6P9R1
Length = 639
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 183/464 (39%), Positives = 260/464 (56%)
Query: 7 KSMPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ-- 60
K P LP W+ P V S+ ED P++ +P + P L+ L+ GI+S FPVQ AV
Sbjct: 145 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGITSYFPVQAAVIPAL 204
Query: 61 -ET------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
E+ IG G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++
Sbjct: 205 LESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKE 264
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172
LA QV VF L V L GQ S+A E L++ K G +
Sbjct: 265 LAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQ--KTADGF-----------RCL 311
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENR 232
DI+VATPGRL+DHI+ T GF+L+ L +L++DE DR++ +Q+WLP V+
Sbjct: 312 ADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDEADRMIDSMHQSWLPRVVAAAF------ 365
Query: 233 FSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP- 291
+S+ T + L+ + + P L K++ SATLTQDP KL +L L+ P
Sbjct: 366 YSEGPT---GSCALLQRTQPQALTAASTCVPQMPLQKLLFSATLTQDPEKLQRLGLYQPR 422
Query: 292 LFLT---------TGET-----RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIV 337
LF T T E +Y P L + + C KPL ++ L+ + + +
Sbjct: 423 LFSTRLGQQSPKDTAEVDENSGKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSRALC 482
Query: 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397
FT+S E++HRL L FG + + E+S R K LK F +GKIQ+L+S+DA R
Sbjct: 483 FTNSRENSHRLYLLAQAFGG--VSVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATAR 540
Query: 398 GMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
G+DV+GV V+NYD P Y++TY+HR GRTARAG+ G+ FTLL K
Sbjct: 541 GIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLLK 584
>ASPGD|ASPL0000059362 [details] [associations]
symbol:AN0637 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001308
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14807 HOGENOM:HOG000203294 EMBL:AACD01000008 RefSeq:XP_658241.1
ProteinModelPortal:Q5BFP3 EnsemblFungi:CADANIAT00002039
GeneID:2876415 KEGG:ani:AN0637.2 OMA:KQAREAC OrthoDB:EOG4CRQ7F
Uniprot:Q5BFP3
Length = 853
Score = 237 (88.5 bits), Expect = 4.6e-54, Sum P(3) = 4.6e-54
Identities = 75/193 (38%), Positives = 102/193 (52%)
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNEN 231
VDIL+ TPGRL+DHI T+GFTL+HL +LV+DE DRLL E++Q W+ V+Q L
Sbjct: 427 VDILICTPGRLVDHIRYTKGFTLKHLQWLVIDEADRLLNESFQEWVDVVMQSLDARKAYG 486
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
F + FL SL+T K+ PR K+VLSAT+T+D +KL L L +P
Sbjct: 487 AFGPSGRFLADLGMSLQT----------KE---PR--KVVLSATMTKDVSKLNSLRLTNP 531
Query: 292 LFLTTG------------------ETRYKLPERLESYKL-ICESKLKPLYLVALLQSLGE 332
+ G + R+ LP L Y + + + + KPLYL+ LL L E
Sbjct: 532 RLVVVGGSDQTTTADDESGVVVHADERFTLPTTLREYSIAVGDGEHKPLYLLRLL--LSE 589
Query: 333 EKCIVFTSSVEST 345
K V SS + T
Sbjct: 590 MKLDV-PSSTKRT 601
Score = 230 (86.0 bits), Expect = 4.6e-54, Sum P(3) = 4.6e-54
Identities = 62/167 (37%), Positives = 86/167 (51%)
Query: 1 MEEAKKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVW 59
+EEA+K + LP W+ +PV S L ++P+L L+ G F VQ AV
Sbjct: 224 VEEAEKPTYSSLPPWLANPVRASAETRAKFSDLG-IEPKLLRVLEVNGYKEAFAVQAAVI 282
Query: 60 QETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
+ GP D+C+++ TGSGKTLSY LP+V L LR L+V+PTR+L Q +
Sbjct: 283 PLLLKGPNNHTGDICVSAATGSGKTLSYVLPLVTELEQIPAPRLRGLIVVPTRELVKQAR 342
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165
+ GL VG AVG +I DE L++ +E Y PE V
Sbjct: 343 EACEFCTAGTGLRVGSAVGNVAIKDEQRSLMR---IEH--VYSPESV 384
Score = 217 (81.4 bits), Expect = 4.6e-54, Sum P(3) = 4.6e-54
Identities = 45/109 (41%), Positives = 68/109 (62%)
Query: 336 IVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
++FT S ES RL LL + I + S KTL A+R+GKI +++++D
Sbjct: 685 LIFTKSSESASRLSRLLALLNPSISGLIGTIVKSNKSSASRKTLSAYRQGKISIIIATDR 744
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKD 442
+RG+D++ + +V+NYD PA I TY+HR GRTARAG G +TL+ H++
Sbjct: 745 ASRGLDLQSLTHVINYDVPASITTYVHRVGRTARAGNEGSAWTLVAHRE 793
>FB|FBgn0004556 [details] [associations]
symbol:Dbp73D "Dead box protein 73D" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0005730 GO:GO:0022008 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 KO:K14807 GeneTree:ENSGT00550000075141 EMBL:M74824
EMBL:AF132173 EMBL:BT010045 PIR:S28762 RefSeq:NP_476833.1
UniGene:Dm.3199 ProteinModelPortal:P26802 SMR:P26802 PaxDb:P26802
PRIDE:P26802 EnsemblMetazoa:FBtr0075347 GeneID:39871
KEGG:dme:Dmel_CG9680 CTD:39871 FlyBase:FBgn0004556
InParanoid:P26802 OMA:CSKTELE OrthoDB:EOG4B8GVH PhylomeDB:P26802
GenomeRNAi:39871 NextBio:815810 Bgee:P26802 GermOnline:CG9680
Uniprot:P26802
Length = 687
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 172/472 (36%), Positives = 250/472 (52%)
Query: 4 AKKKSMPV-LP-WMRSPVDV---SLF--EDCP----LDHLPCLDPRLKVALQNMGISSLF 52
AKKK + + LP W+ P + SL E+ P +D L L+ AL+ M I LF
Sbjct: 102 AKKKKVQMQLPNWLAHPTIIEGGSLQPEEEVPASEAIDQLDYLEKYTCQALKQMKIKRLF 161
Query: 53 PVQVAV--W--QETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALV 106
PVQ V W + P F RD+C+++PTGSGKTL++A+PIVQ LS R V C +RALV
Sbjct: 162 PVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQR-VDCKVRALV 220
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166
VLP +LALQV V + + L V L Q + DE +L+++ K G Y
Sbjct: 221 VLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYK---GKYY------ 271
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
S DI+V TPGRL+DH++AT+GF L+ L +LV+DE DR++ +Q WL + +
Sbjct: 272 ----SKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVK 327
Query: 227 SDNENRFSDAST-----FLPSAFGSL--KTIRRCGVERGFKDKPYPRLVKMVLSAT-LTQ 278
+ + L ++FG K + + + + RL + L AT LT
Sbjct: 328 ETTDQLLAGTQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTM 387
Query: 279 DPNKLAQLDLHHPLFLTT-GET--RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKC 335
K A + LT G+ RY P L + E +LKPL + AL++ ++
Sbjct: 388 PVLKDATEEGADTEALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRF 447
Query: 336 IVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394
+ FT+S + RL +L F + K+ E SG VR++ L+ F GKI L+ SDA
Sbjct: 448 LCFTNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKINGLICSDA 507
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCL 446
+ RG+DV V+ V++Y+ P +I TYIHR GRTARAG+ G T+L + ++ L
Sbjct: 508 LARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQDMTL 559
>POMBASE|SPCC285.03 [details] [associations]
symbol:SPCC285.03 "ATP-dependent RNA helicase Dbp6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC285.03 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14807 EMBL:D89259 PIR:T41249 PIR:T43184
RefSeq:NP_588332.1 ProteinModelPortal:Q76PD3
EnsemblFungi:SPCC285.03.1 GeneID:2538809 KEGG:spo:SPCC285.03
HOGENOM:HOG000203294 OMA:HIDQTPG OrthoDB:EOG490BK3 NextBio:20799991
Uniprot:Q76PD3
Length = 604
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 146/460 (31%), Positives = 220/460 (47%)
Query: 6 KKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI- 63
K VLP W+ P+ V L + +L LQ I+ F VQ AV +
Sbjct: 104 KNITSVLPKWLAEPITVDPNTTVEFSSLN-ISSKLVERLQKQNITRGFAVQAAVLPLLLQ 162
Query: 64 ----GPGL-FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
GP + D+C+++ TGSGKTLSY +PIVQ LS+R V LR +V++PTR+L +QV
Sbjct: 163 DGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVA 222
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178
F GL V GQ S+ E +L G E + +D+LV+
Sbjct: 223 KTFEYYMSGAGLQVCAWTGQKSLRHETYQL-------NG---------DENECRIDVLVS 266
Query: 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL-QLTRS---DNENRFS 234
TPGRL+DHI F+L+HL Y+V+DE DRLL +++Q W+ TV+ +++ N++
Sbjct: 267 TPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNIL 326
Query: 235 D-----ASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ---L 286
D + TFLP L +++ R + S L L Q +
Sbjct: 327 DLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDM 386
Query: 287 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST- 345
++ + + +P L+ Y + S+ KP+ L L+ S + F S E+
Sbjct: 387 EVDDGGEIEDDAIVFSVPPTLQEYHVSVSSE-KPILLYHLIHSKNLTNILCFVKSNEAAA 445
Query: 346 --HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG 403
HRL L++ ++ + R K + F G + +LV SD M RG+DV
Sbjct: 446 RLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVAN 505
Query: 404 VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
NV+NYD P +++Y+HR GRTARAG+ G +TL+ E
Sbjct: 506 TQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHE 545
>UNIPROTKB|G4N9X9 [details] [associations]
symbol:MGG_03229 "ATP-dependent RNA helicase dbp6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM001234
GO:GO:0008026 KO:K14807 RefSeq:XP_003716750.1
EnsemblFungi:MGG_03229T0 GeneID:2676463 KEGG:mgr:MGG_03229
Uniprot:G4N9X9
Length = 896
Score = 226 (84.6 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
Identities = 45/113 (39%), Positives = 69/113 (61%)
Query: 333 EKCIVFTSSVESTHRLCTLLNHFGELRIK--IKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ ++FT S ES RL LL ++ I + R S R K + ++ GK+++LV
Sbjct: 705 DSVLIFTKSNESALRLSRLLEIIAPRQVASCIGTLTSTTRTSERKKVINQYKSGKLRILV 764
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
+SD + RG+D+ +++VVNYD P ++TY+HR GRTARAG+ GR +T K E
Sbjct: 765 ASDLVARGLDLPNLDHVVNYDMPPSVRTYVHRVGRTARAGRAGRAWTFFTKTE 817
Score = 184 (69.8 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
Identities = 54/169 (31%), Positives = 86/169 (50%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+ L S VDIL+ TPGRL++HI T GF L+++ +LVVDE D+LL ++YQ WL V++
Sbjct: 477 VDHLVSKVDILICTPGRLVEHIERTPGFNLDYVRWLVVDEADKLLEQSYQQWLDVVMEKL 536
Query: 226 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK--DKPYPRLVKMVLSATLTQDPNKL 283
S N+ D + G K I + R +K R +M++ ++T P
Sbjct: 537 -STNKPGCRDF--MFQNKSGVRKVILSATMTRNVSLLNKLNLRRPEMIVLESVTAVPTSA 593
Query: 284 A--QLDLHHPLFLTTGETRYKLPERLESYKL-ICESKLKPLYLVALLQS 329
+ D+ + LP +L + + + + + KP+YLV LL S
Sbjct: 594 SGPTTDIAG-VSAEASSYELALPSQLLEFAIKVRDPEQKPMYLVDLLSS 641
Score = 177 (67.4 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
Identities = 60/173 (34%), Positives = 86/173 (49%)
Query: 12 LP-WMRSPVDVSL---FEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVAVWQETIGP 65
LP W++SP+ VS E L P L P + L G F VQ A +
Sbjct: 278 LPLWLQSPLYVSSGTQAEWASLGLRPELGISPEIASQLALKGYPGAFAVQTAAIPRLLPR 337
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125
+ DL I++ TGSGKTL+Y LP+++ +S AV LRAL+V+PTR+L QV +V A
Sbjct: 338 PDRQGDLVISAATGSGKTLAYVLPMIRDISLGAVTKLRALIVVPTRELVQQVHEVCNICA 397
Query: 126 PAVG-------LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
A + +G AVG + E +L+ + + YDPE + +QS
Sbjct: 398 AAYARQPNRKTVRIGTAVGNQAFKKEQEKLMDKDRR-----YDPEGYARLVQS 445
>DICTYBASE|DDB_G0293740 [details] [associations]
symbol:ddx51 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0293740 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000218
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14807 OMA:HIDQTPG RefSeq:XP_629093.1
ProteinModelPortal:Q54BD6 EnsemblProtists:DDB0234210 GeneID:8629386
KEGG:ddi:DDB_G0293740 Uniprot:Q54BD6
Length = 563
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 114/302 (37%), Positives = 174/302 (57%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSNRAV 99
L+ I +LFPVQ QE + P + D+C+ +PTGSGKTL+YA+P+VQ + R V
Sbjct: 30 LKEQSIINLFPVQ----QEIV-PFINRTEGHDICVCAPTGSGKTLAYAIPLVQKIVKRVV 84
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159
R +R V++PT DL +QV+ F +I L V L++G E LIK
Sbjct: 85 RRVRVAVIVPTHDLVIQVEKTFQSIIKGTDLVV-LSLGVKPFHIEQKLLIKNHS------ 137
Query: 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219
Y E L E S VDI+V+TPGR++DHIN T GFTL++L YLV+DE DRLLR+++Q WL
Sbjct: 138 YG-EHALYE--SLVDIIVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLE 194
Query: 220 TVLQLTRSDNE-NRFSDASTFLPSAFGSLKTIRRC-GVERGFKDKPYP-----RLVKMVL 272
V+ T ++ N+ + ++ G ++ + ++ + +LVK++L
Sbjct: 195 IVIDSTNQHSDLNQQQEEQLIKYNSKGDIELFEKSISLKDNNNQMNHLCWSEFKLVKLLL 254
Query: 273 SATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESKLKPLYLVALL-Q 328
SAT+T +P+K++ L L+ PLF TT +T+ Y +P L+ +I KPL L+ ++ +
Sbjct: 255 SATMTYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLVLLNIIYE 314
Query: 329 SL 330
SL
Sbjct: 315 SL 316
Score = 346 (126.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 79/194 (40%), Positives = 119/194 (61%)
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR---YKLPERLESYKLICESKLKPLY 322
+LVK++LSAT+T +P+K++ L L+ PLF TT +T+ Y +P L+ +I KPL
Sbjct: 248 KLVKLLLSATMTYNPSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLV 307
Query: 323 LVALL-QSL------GE--EKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQR 370
L+ ++ +SL GE +K I FT SV+ THRL TLL G+ L+ +EYS
Sbjct: 308 LLNIIYESLLKNNANGENKKKIICFTKSVDITHRLNTLLKLIGQVDKLKFTCEEYSSSLS 367
Query: 371 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430
R+ L F+ +I +L+ SD M+RGMD++ ++ V+NY+ P I Y+HR GRTARAG
Sbjct: 368 TVERADLLSRFKLNQIDILICSDIMSRGMDIQDIDVVINYNTPPNITLYVHRVGRTARAG 427
Query: 431 QLGRCFTLLHKDEV 444
G +T++ K E+
Sbjct: 428 NFGVSYTIVDKSEI 441
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 248 (92.4 bits), Expect = 4.7e-40, Sum P(3) = 4.7e-40
Identities = 64/185 (34%), Positives = 92/185 (49%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
+++ K P+ R ++ SAT+T KL + LH P+ + +++ + L L
Sbjct: 210 IDKILKIIPHERRT-LLFSATMTSKVEKLQRASLHQPVRVAVS-SKFSTVDTLIQRYLFF 267
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
K K YLV L+ L I+F +V T RL LL G I + G QS R
Sbjct: 268 PFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLH---GQLSQSNR 324
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
L F+ G LV++D RG+D+ V+ V+NYD P K YIHR GRTARAG+ G+
Sbjct: 325 LGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGK 384
Query: 435 CFTLL 439
L+
Sbjct: 385 SIALV 389
Score = 153 (58.9 bits), Expect = 4.7e-40, Sum P(3) = 4.7e-40
Identities = 42/130 (32%), Positives = 71/130 (54%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A + +G + P+Q QE I L +RD+ + TGSGKT ++ALP++Q L N
Sbjct: 60 ACEKLGFKTPTPIQ----QEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPF 115
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
A+V+ PTR+LA Q+ + F AI ++G+ + VG + + L K+P + +C
Sbjct: 116 F-AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVL--VC-T 171
Query: 162 PEDVLQELQS 171
P ++ L++
Sbjct: 172 PGRLMDHLEN 181
Score = 130 (50.8 bits), Expect = 4.7e-40, Sum P(3) = 4.7e-40
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+LV TPGRLMDH+ T+GF+L++L YL++DE DRLL + + +L++
Sbjct: 167 VLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKI 216
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 252 (93.8 bits), Expect = 4.0e-39, Sum P(3) = 4.0e-39
Identities = 60/172 (34%), Positives = 98/172 (56%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPL--FLTTGETRYKLPERLESYKLICESKL-KPLYLVAL 326
M+ SAT+T + L +L L+ P+ F+ +T KL + E ++ + +L +P L+ L
Sbjct: 440 MLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQ-EFVRVRPQRELLRPAMLIYL 498
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
+ L + I+F S H++ + FG L + E G Q R + L+ FR+GK
Sbjct: 499 CKELFHRRTIIFFRSKAFAHKMRVI---FGLLSLNATEIHGSLSQEQRVRALEDFRDGKC 555
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
L+++D +RG+D++G+ V+NY+ PA + Y+HR GRTARAG+ GR TL
Sbjct: 556 NYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITL 607
Score = 149 (57.5 bits), Expect = 4.0e-39, Sum P(3) = 4.0e-39
Identities = 40/111 (36%), Positives = 61/111 (54%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLR 103
G+S+L F V + +TI L +D+ + TGSGKT ++ +PI++ L R V R
Sbjct: 273 GLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTR 332
Query: 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
L++ PTR+LA+Q V IA + V L +G S+ + EL KRP +
Sbjct: 333 VLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDI 383
Score = 135 (52.6 bits), Expect = 4.0e-39, Sum P(3) = 4.0e-39
Identities = 24/57 (42%), Positives = 41/57 (71%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
QEL+ DI++ATPGR +DH+ ++GFT+E++ +V+DE DR+L + + L ++Q
Sbjct: 375 QELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQ 431
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 252 (93.8 bits), Expect = 5.2e-39, Sum P(3) = 5.2e-39
Identities = 61/184 (33%), Positives = 99/184 (53%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR + L SAT+T+ KL + L P+ + ++Y ++L+ + + SK K
Sbjct: 248 KVIPRDRRTFLFSATMTKKVQKLQRAALQDPVKCSVS-SKYATVDKLQQFYIFIPSKYKD 306
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
YLV++L L +VF + +T R+ LL + G I + G Q+ R L
Sbjct: 307 CYLVSILNELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLH---GQMSQNKRLGALNK 363
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
F+ VL+++D +RG+D+ V+ V+N+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 364 FKSKSRSVLLATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVT 423
Query: 441 KDEV 444
+ +V
Sbjct: 424 QYDV 427
Score = 144 (55.7 bits), Expect = 5.2e-39, Sum P(3) = 5.2e-39
Identities = 35/100 (35%), Positives = 58/100 (58%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++A+P++Q+L A R L LV+ PTR+
Sbjct: 102 PTKIQI--EAIPVALQGRDVIGLAETGSGKTGAFAVPVLQSLLACAQR-LHTLVLTPTRE 158
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LA Q+ + F A+ ++G+ + VG + + L K+P
Sbjct: 159 LAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKP 198
Score = 128 (50.1 bits), Expect = 5.2e-39, Sum P(3) = 5.2e-39
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN-RF 233
+++ATPGRL+DH+ T+GF L L YLV+DE DR+L +++ + +L++ D F
Sbjct: 200 VVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLF 259
Query: 234 SDAST 238
S T
Sbjct: 260 SATMT 264
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 238 (88.8 bits), Expect = 2.3e-38, Sum P(3) = 2.3e-38
Identities = 62/193 (32%), Positives = 98/193 (50%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
++R K P + SAT+T +KL + L +P+ +Y+ + L ++
Sbjct: 245 LDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSN-KYQTVDTLVQTLMVV 303
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
LK YL+ LL + I+FT + + RL L N L G Q+ R
Sbjct: 304 PGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL---LEFSATALHGDLNQNQR 360
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
+L F+ GK +LV++D RG+D+ V+ VVNYD P K+YIHR GRTARAG+ G+
Sbjct: 361 MGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGK 420
Query: 435 CFTLLHKDEVCLV 447
+L+ + ++ L+
Sbjct: 421 SISLVSQYDLELI 433
Score = 146 (56.5 bits), Expect = 2.3e-38, Sum P(3) = 2.3e-38
Identities = 37/120 (30%), Positives = 65/120 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L A +N+ S P+Q + I P L D+ + TGSGKT ++A+PI+ L
Sbjct: 88 LVPELIQACKNLNYSKPTPIQ----SKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRL 143
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A ++ PTR+LA Q+K+ F ++ +G+ VG ++ D+ +L+++P +
Sbjct: 144 WHDQ-EPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHI 202
Score = 136 (52.9 bits), Expect = 2.3e-38, Sum P(3) = 2.3e-38
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
D ++L I++ATPGRLMDH+ T+GF+L L +LV+DE DRLL + L +L+
Sbjct: 191 DQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILK 250
Query: 224 LTRSDNENRFSDAST 238
+ + + ++T
Sbjct: 251 IIPTQERTTYLFSAT 265
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 236 (88.1 bits), Expect = 3.4e-38, Sum P(3) = 3.4e-38
Identities = 59/174 (33%), Positives = 91/174 (52%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+ SAT++ L + L +P+ ++ ++Y+ L+S + K K LYLV LL
Sbjct: 225 LFSATMSTKVESLQRASLSNPVRVSVS-SKYQTVSTLQSSYICIPHKHKNLYLVYLLNEF 283
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ I+FT++V T R+ +L G I + G QS R L FR +LV
Sbjct: 284 AGQSAIIFTTTVHETQRVAFMLRALGFGAIPLH---GQLSQSARLGALGKFRSRSRDILV 340
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
++D RG+D+ V+ V N+D P KTYIHR GRTARAG+ G + + + +V
Sbjct: 341 ATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDV 394
Score = 150 (57.9 bits), Expect = 3.4e-38, Sum P(3) = 3.4e-38
Identities = 42/130 (32%), Positives = 67/130 (51%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
A +NMG + P+Q + I L RD+ + TGSGKT ++ALP++Q L A +
Sbjct: 60 ACENMGYKAPTPIQ----SQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALME-APQT 114
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
L LV+ PTR+LA Q+ F + +G+ + VG + + L K+P + I
Sbjct: 115 LFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHI---IVAT 171
Query: 162 PEDVLQELQS 171
P +L L++
Sbjct: 172 PGRLLDHLEN 181
Score = 130 (50.8 bits), Expect = 3.4e-38, Sum P(3) = 3.4e-38
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRF 233
I+VATPGRL+DH+ T+GF+L +L YL +DE DRLL + L +++ L R+ + F
Sbjct: 167 IIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLF 226
Query: 234 S 234
S
Sbjct: 227 S 227
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 251 (93.4 bits), Expect = 8.5e-38, Sum P(3) = 8.5e-38
Identities = 56/176 (31%), Positives = 99/176 (56%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT++++ LA + L P+ + P + + I +K + + ALL
Sbjct: 382 MLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAALL 441
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++ ++FT + + HR+ LL G +K+ E G Q+ R ++L+ F++ +I
Sbjct: 442 TRTFQDHVMLFTQTKKQAHRMHILLGLMG---LKVGELHGNLSQTQRLESLRRFKDEQID 498
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
+LV++D RG+D+EGV V+N+ P +K Y+HR GRTARAG++GR +L+ + E
Sbjct: 499 ILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETE 554
Score = 150 (57.9 bits), Expect = 8.5e-38, Sum P(3) = 8.5e-38
Identities = 40/118 (33%), Positives = 62/118 (52%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A + GL +D+C + TG+GKT ++ LP+++ L
Sbjct: 211 PLLK-AISTMGFKQPTPIQKAC----VPVGLLGKDICACAATGTGKTAAFMLPVLERLIY 265
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
R + R LV++PTR+L +QV V +A +S LAVG + + + L P
Sbjct: 266 KPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRAGP 323
Score = 123 (48.4 bits), Expect = 8.5e-38, Sum P(3) = 8.5e-38
Identities = 21/56 (37%), Positives = 39/56 (69%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
L++ D+L+ATPGRL+DH++ T F L + L++DE DR+L E ++ + ++++
Sbjct: 319 LRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRM 374
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 248 (92.4 bits), Expect = 1.0e-37, Sum P(3) = 1.0e-37
Identities = 64/194 (32%), Positives = 101/194 (52%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR + L SAT+T+ KL + L P+ + +Y+ E+L+ L K K
Sbjct: 230 KVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSN-KYQTVEQLQQSYLFIPVKYKD 288
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
+YLV +L L ++F S+ +T + +L G I + G Q+ R L
Sbjct: 289 VYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLH---GQMSQNKRLAALNK 345
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
F+ +L+S+D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ TL+
Sbjct: 346 FKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVS 405
Query: 441 KDEVCLVGCLTPLL 454
+ ++ L + LL
Sbjct: 406 QYDIELYQRIEHLL 419
Score = 136 (52.9 bits), Expect = 1.0e-37, Sum P(3) = 1.0e-37
Identities = 33/97 (34%), Positives = 54/97 (55%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ +E I L +D+ + TGSGKT ++ALPI+ L R ALV+ PTR+LA Q+
Sbjct: 87 IQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYF-ALVLTPTRELAFQI 145
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ F A+ +G+ + VG + + +L K+P +
Sbjct: 146 GEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHI 182
Score = 128 (50.1 bits), Expect = 1.0e-37, Sum P(3) = 1.0e-37
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 165 VLQELQSAVD--ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
V Q LQ A I++ATPGRL+DH+ +GF L+ + YLV+DE DR+L ++ L +L
Sbjct: 170 VAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKIL 229
Query: 223 Q-LTRSDNENRFSDAST 238
+ L R FS T
Sbjct: 230 KVLPRERRTFLFSATMT 246
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 245 (91.3 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 56/176 (31%), Positives = 98/176 (55%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 365 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 424
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ ++FT + + HR+ LL G L +++ E G Q+ R + L+ F++ +I
Sbjct: 425 MRTFTDHVMLFTQTKKQAHRMHILL---GLLGLQVGELHGNLSQTQRLEALRRFKDEQID 481
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
+LV++D RG+D+EGV V+N+ P +K Y+HR GRTARAG+ GR +L+ ++E
Sbjct: 482 ILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEE 537
Score = 156 (60.0 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 48/141 (34%), Positives = 71/141 (50%)
Query: 17 SPVDVSL-FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN 75
S D SL F+D L P LK A+ MG P+Q A I GL +D+C
Sbjct: 178 SEYDKSLSFQDMNLSR-----PLLK-AITAMGFKQPTPIQKAC----IPVGLLGKDICAC 227
Query: 76 SPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVG 133
+ TG+GKT ++ALP+++ L R R LV++PTR+L +QV V +A ++
Sbjct: 228 AATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTC 287
Query: 134 LAVGQSSIADEISELIKRPKL 154
LAVG + + + L P +
Sbjct: 288 LAVGGLDVKSQEAALRAAPDI 308
Score = 120 (47.3 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 302 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 357
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 247 (92.0 bits), Expect = 3.8e-37, Sum P(3) = 3.8e-37
Identities = 57/176 (32%), Positives = 97/176 (55%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 399 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 458
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 459 TRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQRLEALRRFKDEQID 515
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
+LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +L+ +DE
Sbjct: 516 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 571
Score = 152 (58.6 bits), Expect = 3.8e-37, Sum P(3) = 3.8e-37
Identities = 41/120 (34%), Positives = 63/120 (52%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L
Sbjct: 228 PLLK-AITAMGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIY 282
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R R LV++PTR+L +QV V +A ++ LAVG + + + L P +
Sbjct: 283 KPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDI 342
Score = 120 (47.3 bits), Expect = 3.8e-37, Sum P(3) = 3.8e-37
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 336 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 391
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 244 (91.0 bits), Expect = 7.0e-37, Sum P(3) = 7.0e-37
Identities = 56/176 (31%), Positives = 97/176 (55%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 368 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 427
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 428 MRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQRLEALRRFKDEQID 484
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
+LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +L+ ++E
Sbjct: 485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 540
Score = 152 (58.6 bits), Expect = 7.0e-37, Sum P(3) = 7.0e-37
Identities = 41/120 (34%), Positives = 63/120 (52%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L
Sbjct: 197 PLLK-AITAMGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIY 251
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R R LV++PTR+L +QV V +A ++ LAVG + + + L P +
Sbjct: 252 KPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDI 311
Score = 120 (47.3 bits), Expect = 7.0e-37, Sum P(3) = 7.0e-37
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 305 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 360
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 244 (91.0 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 56/176 (31%), Positives = 97/176 (55%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 368 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALL 427
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 428 TRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQRLEALRRFKDEQID 484
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
+LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +L+ ++E
Sbjct: 485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 540
Score = 150 (57.9 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 41/120 (34%), Positives = 63/120 (52%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L
Sbjct: 197 PLLK-AITAMGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIY 251
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R R LV++PTR+L +QV V +A ++ LAVG + + + L P +
Sbjct: 252 KPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDI 311
Score = 120 (47.3 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 305 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 360
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 244 (91.0 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 56/176 (31%), Positives = 97/176 (55%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 389 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALL 448
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 449 TRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQRLEALRRFKDEQID 505
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
+LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +L+ ++E
Sbjct: 506 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 561
Score = 150 (57.9 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 41/120 (34%), Positives = 63/120 (52%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-- 94
P LK A+ MG P+Q A I GL +D+C + TG+GKT ++ALP+++ L
Sbjct: 218 PLLK-AITAMGFKQPTPIQKAC----IPVGLLGKDICACAATGTGKTAAFALPVLERLIY 272
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R R LV++PTR+L +QV V +A ++ LAVG + + + L P +
Sbjct: 273 KPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAPDI 332
Score = 120 (47.3 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
L++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 326 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 381
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 230 (86.0 bits), Expect = 2.3e-36, Sum P(3) = 2.3e-36
Identities = 60/194 (30%), Positives = 99/194 (51%)
Query: 255 VERGFKDK--------PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 306
+E GF+D+ P + ++ SAT+ L QL L P+ + + +
Sbjct: 288 LEEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKL 347
Query: 307 LESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365
L+ + I + +LKP L LL+ + + +VF + E+ HRL +L G L +K+ E
Sbjct: 348 LQQFVRIRKRDQLKPALLYQLLKGVSS-RVVVFVARKETAHRLRIVL---GLLGLKVSEL 403
Query: 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 425
G Q R + +K F+ ++ VL+ +D RG+D+ + V+NYD P + Y+HR GR
Sbjct: 404 HGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGR 463
Query: 426 TARAGQLGRCFTLL 439
TARAG+ G T +
Sbjct: 464 TARAGRDGTSITFV 477
Score = 143 (55.4 bits), Expect = 2.3e-36, Sum P(3) = 2.3e-36
Identities = 35/110 (31%), Positives = 61/110 (55%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105
GI+ L F + +I L +D+ + TGSGKT +Y +PI++ L + + +
Sbjct: 144 GIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVI 203
Query: 106 VVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKL 154
++ PTR+LALQV + ++ V L++GLAVG ++ + +L RP +
Sbjct: 204 ILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDI 253
Score = 135 (52.6 bits), Expect = 2.3e-36, Sum P(3) = 2.3e-36
Identities = 25/58 (43%), Positives = 41/58 (70%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
++L++ DI++ATPGRL+DHI + F+++ + LV+DE DR+L E +Q L +L L
Sbjct: 245 EQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSL 302
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 230 (86.0 bits), Expect = 2.3e-36, Sum P(3) = 2.3e-36
Identities = 60/194 (30%), Positives = 99/194 (51%)
Query: 255 VERGFKDK--------PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 306
+E GF+D+ P + ++ SAT+ L QL L P+ + + +
Sbjct: 288 LEEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKL 347
Query: 307 LESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365
L+ + I + +LKP L LL+ + + +VF + E+ HRL +L G L +K+ E
Sbjct: 348 LQQFVRIRKRDQLKPALLYQLLKGVSS-RVVVFVARKETAHRLRIVL---GLLGLKVSEL 403
Query: 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 425
G Q R + +K F+ ++ VL+ +D RG+D+ + V+NYD P + Y+HR GR
Sbjct: 404 HGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGR 463
Query: 426 TARAGQLGRCFTLL 439
TARAG+ G T +
Sbjct: 464 TARAGRDGTSITFV 477
Score = 143 (55.4 bits), Expect = 2.3e-36, Sum P(3) = 2.3e-36
Identities = 35/110 (31%), Positives = 61/110 (55%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105
GI+ L F + +I L +D+ + TGSGKT +Y +PI++ L + + +
Sbjct: 144 GIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVI 203
Query: 106 VVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKL 154
++ PTR+LALQV + ++ V L++GLAVG ++ + +L RP +
Sbjct: 204 ILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDI 253
Score = 135 (52.6 bits), Expect = 2.3e-36, Sum P(3) = 2.3e-36
Identities = 25/58 (43%), Positives = 41/58 (70%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
++L++ DI++ATPGRL+DHI + F+++ + LV+DE DR+L E +Q L +L L
Sbjct: 245 EQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSL 302
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 216 (81.1 bits), Expect = 2.3e-36, Sum P(4) = 2.3e-36
Identities = 54/175 (30%), Positives = 91/175 (52%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--ESYKLICESKLKPLYLVALL 327
++ SAT+ L L L P+ + + K +L E ++ LKP L L+
Sbjct: 413 LLFSATMNSKIKSLVSLSLKKPVRIMIDPPK-KAATKLTQEFVRIRKRDHLKPALLFNLI 471
Query: 328 QSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
+ L G+++ +VF + E+ HRL ++ G L + + E G Q R ++ F+
Sbjct: 472 RKLDPTGQKRIVVFVARKETAHRLRIIM---GLLGMSVGELHGSLTQEQRLDSVNKFKNL 528
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
++ VL+ +D +RG+D+ + V+NYD P + Y+HR GRTARAG+ GR T +
Sbjct: 529 EVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFV 583
Score = 161 (61.7 bits), Expect = 2.3e-36, Sum P(4) = 2.3e-36
Identities = 45/121 (37%), Positives = 68/121 (56%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P LK L ++G P+Q A TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 241 PVLK-GLASLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLY 295
Query: 97 RAVRCL--RALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPK 153
+ + R +V+LPTR+LA+QV DV IA V G++ GLAVG ++ + L RP
Sbjct: 296 KPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPD 355
Query: 154 L 154
+
Sbjct: 356 I 356
Score = 135 (52.6 bits), Expect = 2.3e-36, Sum P(4) = 2.3e-36
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q L+S DI++ATPGR +DHI + F ++ + LV+DE DR+L E +Q L ++ L
Sbjct: 348 QMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLP 407
Query: 227 SDNENRFSDAS 237
S+ +N A+
Sbjct: 408 SNRQNLLFSAT 418
Score = 41 (19.5 bits), Expect = 2.3e-36, Sum P(4) = 2.3e-36
Identities = 7/19 (36%), Positives = 15/19 (78%)
Query: 459 DILQRKTRLQKSKSRLRHK 477
+IL+ + +L+K ++ L+HK
Sbjct: 647 EILRAEMQLRKGENMLKHK 665
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 237 (88.5 bits), Expect = 3.9e-35, Sum P(3) = 3.9e-35
Identities = 55/176 (31%), Positives = 96/176 (54%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T++ LA + L +P + P + + I ++ + + ALL
Sbjct: 361 MLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALL 420
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 421 TRTFPDHVMLFTQTKKQAHRMHILLGLMG---LRVGELHGNLSQAQRLEALRRFKDEQID 477
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
+LV++D RG+D+EGV V+N+ P K Y+HR GRTARAG+ GR +L+ ++E
Sbjct: 478 ILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEE 533
Score = 142 (55.0 bits), Expect = 3.9e-35, Sum P(3) = 3.9e-35
Identities = 46/142 (32%), Positives = 70/142 (49%)
Query: 22 SLFEDCPL--DHLPCLD-----PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCI 74
S FED D+L D P LK A+ +G P+Q A I GL +D+C
Sbjct: 168 SFFEDASEYDDNLSFQDMNLSRPLLK-AITALGFKQPTPIQKAC----IPVGLLGKDICA 222
Query: 75 NSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSV 132
+ TG+GKT ++ LP+++ L R R LV++PTR+L +QV V +A ++
Sbjct: 223 CAATGTGKTAAFILPVLERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTT 282
Query: 133 GLAVGQSSIADEISELIKRPKL 154
LAVG + + + L P +
Sbjct: 283 CLAVGGLDVKTQEAALRSGPDI 304
Score = 121 (47.7 bits), Expect = 3.9e-35, Sum P(3) = 3.9e-35
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL-TRS 227
L+S DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + +++L +R
Sbjct: 298 LRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRH 357
Query: 228 DNENRFSDAST 238
FS T
Sbjct: 358 RQTMLFSATMT 368
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 241 (89.9 bits), Expect = 4.6e-35, Sum P(3) = 4.6e-35
Identities = 58/182 (31%), Positives = 99/182 (54%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT +L L + P F T + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLKELQGLATNQPFFWEAQAT-VRTVEQLDQRYLLVPEKVKDAYLVHLVQT 241
Query: 330 LGE--EKC--IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+ E C I+FT++ ++ LC +L F + + + +Q R L F+
Sbjct: 242 FQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHS---MMKQKERFAALARFKSST 298
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVC 445
++L+++D +RG+D+ V V+N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358
Query: 446 LV 447
L+
Sbjct: 359 LL 360
Score = 133 (51.9 bits), Expect = 4.6e-35, Sum P(3) = 4.6e-35
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ +G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQLGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 72 F-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKP 121
Score = 112 (44.5 bits), Expect = 4.6e-35, Sum P(3) = 4.6e-35
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---YQAWLPTVL 222
EL +++ATPGRL DH+ ++ F ++ + +LV+DE DRLL + + A L T+L
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETIL 173
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 220 (82.5 bits), Expect = 6.2e-35, Sum P(3) = 6.2e-35
Identities = 56/182 (30%), Positives = 94/182 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT N+L L ++ P F + E + Y L+ E+ +K YLV L+Q+
Sbjct: 183 LLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEA-VKDAYLVHLIQT 241
Query: 330 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+E I+FT + + L +L F + + + +Q R L F+
Sbjct: 242 FQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHS---MMKQRQRFAALAKFKSSI 298
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVC 445
++L+++D RG+D+ V V+N++ P K YIHR GRTARAG+ G T++ + ++
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIH 358
Query: 446 LV 447
LV
Sbjct: 359 LV 360
Score = 145 (56.1 bits), Expect = 6.2e-35, Sum P(3) = 6.2e-35
Identities = 42/119 (35%), Positives = 62/119 (52%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQT 93
L P L + MG+S PVQ + I P L RD C+ + TGSGKT ++ LP++Q
Sbjct: 9 LAPWLVEQARQMGLSRPTPVQASC----IPPILQGRD-CLGCAKTGSGKTAAFVLPVLQV 63
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LS LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 64 LSEDPYGIF-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKP 121
Score = 117 (46.2 bits), Expect = 6.2e-35, Sum P(3) = 6.2e-35
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQL 224
EL +++ATPGRL DH+ ++ F+L+ L +LV+DE DRLL + + A L +L+
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEA 175
Query: 225 TRSDNENRFSDASTFLPSAFGSLKTI 250
+ + A+ L LK++
Sbjct: 176 VPARRQTLLFSAT--LTDTLNELKSL 199
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 241 (89.9 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 57/182 (31%), Positives = 98/182 (53%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT +L L + P F + + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLRELQSLATNQPFFWEA-QAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 330 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+E I+FT++ ++ LC +L F + + + +Q R L F+
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHS---MMKQKERFAALAKFKSSI 298
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVC 445
++L+++D +RG+D+ V V+N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358
Query: 446 LV 447
LV
Sbjct: 359 LV 360
Score = 132 (51.5 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ +G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQLGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 72 F-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
Score = 109 (43.4 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
EL +++ATPGRL DH+ ++ F+++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQ 160
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 239 (89.2 bits), Expect = 2.5e-34, Sum P(3) = 2.5e-34
Identities = 57/182 (31%), Positives = 98/182 (53%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT +L L + P F + + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLKELQGLATNQPFFWEA-QAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQN 241
Query: 330 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+E I+FT++ ++ LC +L F + + + +Q R L F+
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHS---MMKQKERFAALAKFKSSI 298
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVC 445
++L+++D +RG+D+ V V+N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358
Query: 446 LV 447
LV
Sbjct: 359 LV 360
Score = 132 (51.5 bits), Expect = 2.5e-34, Sum P(3) = 2.5e-34
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ +G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQLGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 72 F-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
Score = 109 (43.4 bits), Expect = 2.5e-34, Sum P(3) = 2.5e-34
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
EL +++ATPGRL DH+ ++ F+++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQ 160
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 239 (89.2 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
Identities = 58/182 (31%), Positives = 99/182 (54%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT +L L + P F T + E+L+ L+ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLKELQGLATNEPFFWEAQAT-VRTVEQLDQRYLLVPEKVKDAYLVHLVQT 241
Query: 330 LGE--EKC--IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+ E C I+FT++ ++ LC +L F + + + +Q R L F+
Sbjct: 242 FQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHS---MMKQKERFAALAKFKSSI 298
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVC 445
++L+++D +RG+D+ V V+N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358
Query: 446 LV 447
L+
Sbjct: 359 LL 360
Score = 132 (51.5 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ +G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQLGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 72 F-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
Score = 108 (43.1 bits), Expect = 2.8e-34, Sum P(3) = 2.8e-34
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
EL +++ATPGRL DH+ ++ F ++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQ 160
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 220 (82.5 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 56/182 (30%), Positives = 94/182 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT N+L L ++ P F + E + Y L+ E+ +K YLV L+Q+
Sbjct: 186 LLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEA-VKDAYLVHLIQT 244
Query: 330 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+E I+FT + + L +L F + + + +Q R L F+
Sbjct: 245 FQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHS---MMKQRQRFAALAKFKSSI 301
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVC 445
++L+++D RG+D+ V V+N++ P K YIHR GRTARAG+ G T++ + ++
Sbjct: 302 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIH 361
Query: 446 LV 447
LV
Sbjct: 362 LV 363
Score = 145 (56.1 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 42/119 (35%), Positives = 62/119 (52%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQT 93
L P L + MG+S PVQ + I P L RD C+ + TGSGKT ++ LP++Q
Sbjct: 12 LAPWLVEQARQMGLSRPTPVQASC----IPPILQGRD-CLGCAKTGSGKTAAFVLPVLQV 66
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LS LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 67 LSEDPYGIF-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKP 124
Score = 117 (46.2 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQL 224
EL +++ATPGRL DH+ ++ F+L+ L +LV+DE DRLL + + A L +L+
Sbjct: 119 ELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEA 178
Query: 225 TRSDNENRFSDASTFLPSAFGSLKTI 250
+ + A+ L LK++
Sbjct: 179 VPARRQTLLFSAT--LTDTLNELKSL 202
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 237 (88.5 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 55/176 (31%), Positives = 96/176 (54%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T++ LA + L +P + P + + I ++ + + ALL
Sbjct: 362 MLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALL 421
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ ++FT + + HR+ LL G +++ E G Q+ R + L+ F++ +I
Sbjct: 422 TRTFPDHVMLFTQTKKQAHRMHILLGLMG---LRVGELHGNLSQAQRLEALRRFKDEQID 478
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
+LV++D RG+D+EGV V+N+ P K Y+HR GRTARAG+ GR +L+ ++E
Sbjct: 479 ILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEE 534
Score = 133 (51.9 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 46/143 (32%), Positives = 70/143 (48%)
Query: 22 SLFEDCPL--DHLPCLD-----PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCI 74
S FED D+L D P LK A+ +G P+Q A I GL +D+C
Sbjct: 168 SFFEDASEYDDNLSFQDMNLSRPLLK-AITALGFKQPTPIQKAC----IPVGLLGKDICA 222
Query: 75 NSPTGS-GKTLSYALPIVQTL--SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131
+ TG+ GKT ++ LP+++ L R R LV++PTR+L +QV V +A ++
Sbjct: 223 CAATGTVGKTAAFILPVLERLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVT 282
Query: 132 VGLAVGQSSIADEISELIKRPKL 154
LAVG + + + L P +
Sbjct: 283 TCLAVGGLDVKTQEAALRSGPDI 305
Score = 121 (47.7 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL-TRS 227
L+S DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + +++L +R
Sbjct: 299 LRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRH 358
Query: 228 DNENRFSDAST 238
FS T
Sbjct: 359 RQTMLFSATMT 369
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 235 (87.8 bits), Expect = 7.2e-34, Sum P(3) = 7.2e-34
Identities = 57/182 (31%), Positives = 96/182 (52%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT +L L + P F + E+L+ L+ K+K YLV L+Q
Sbjct: 183 LLFSATLTDTLRELQGLATNQPFFWEA-QAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQR 241
Query: 330 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+E I+FT++ ++ LC +L F + + + +Q R L F+
Sbjct: 242 FQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHS---MMKQKERFAALAKFKSSI 298
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVC 445
++L+++D +RG+D+ V V+N++ P K YIHR GRTARAG+ G+ TL+ + ++
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358
Query: 446 LV 447
LV
Sbjct: 359 LV 360
Score = 132 (51.5 bits), Expect = 7.2e-34, Sum P(3) = 7.2e-34
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ +G+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQLGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LV+ PTR+LA Q+ + F + +GL + VG + + EL ++P
Sbjct: 72 F-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKP 121
Score = 109 (43.4 bits), Expect = 7.2e-34, Sum P(3) = 7.2e-34
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
EL +++ATPGRL DH+ ++ F+++ + +LV+DE DRLL +
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQ 160
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 226 (84.6 bits), Expect = 9.2e-33, Sum P(3) = 9.2e-33
Identities = 55/185 (29%), Positives = 97/185 (52%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATLT +L + ++ P F ++ + E L+ ++ K+K YLV L+Q+
Sbjct: 183 LLFSATLTDTLQQLQSIAMNRPFFWEH-KSDVQTVEELDQRFILTPEKVKDAYLVHLIQT 241
Query: 330 LGEE----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
+E I+FT++ +S L +L F I + + +Q R L F+
Sbjct: 242 FQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHS---MMKQRQRFANLAKFKSNV 298
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVC 445
++L+++D RG+D+ V V+N++ P K YIHR GRTARAG+ G TL+ + ++
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIH 358
Query: 446 LVGCL 450
L+ +
Sbjct: 359 LINAI 363
Score = 135 (52.6 bits), Expect = 9.2e-33, Sum P(3) = 9.2e-33
Identities = 40/111 (36%), Positives = 59/111 (53%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ MGIS P V QE P + + RD C+ + TGSGKT ++ LP++Q LS
Sbjct: 18 KQMGISR--PTAV---QEKCIPAILDGRD-CMGCAKTGSGKTAAFVLPVLQKLSEDPYGV 71
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
LV+ PTR+LA Q+ + F + +GL + VG + + EL K+P
Sbjct: 72 F-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKP 121
Score = 105 (42.0 bits), Expect = 9.2e-33, Sum P(3) = 9.2e-33
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212
EL ++VATPGRL DHI ++ L + +L++DE DRLL +
Sbjct: 116 ELSKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQ 160
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 230 (86.0 bits), Expect = 3.1e-32, Sum P(3) = 3.1e-32
Identities = 56/178 (31%), Positives = 96/178 (53%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT+T++ KL + L+ P F+ ++Y + L+ + + K YLV +L+
Sbjct: 184 LLFSATMTKNLTKLDSIALNKP-FIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKK 242
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
IVF ++ + + +LN + + +S L ++S R LK F+ GK++VL
Sbjct: 243 HEGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSL--HSFLDQKS-RLAALKTFKSGKVKVL 299
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV 447
V++D +RG+D+ V V+NY K YIHR GRTAR G+ GR + + +V L+
Sbjct: 300 VATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLI 357
Score = 130 (50.8 bits), Expect = 3.1e-32, Sum P(3) = 3.1e-32
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
TI L RD+ ++ TGSGKT S+A+PI+ LS A+++ PTR+LA+Q+ + F
Sbjct: 34 TIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVF-AVILTPTRELAVQIGEQF 92
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
AI + ++ + +G + L KRP +
Sbjct: 93 NAIGAPMNVNCSVVIGGIDNVTQALILDKRPHI 125
Score = 103 (41.3 bits), Expect = 3.1e-32, Sum P(3) = 3.1e-32
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
I+VATPGRL H+N L+ +LV+DE DRLL E ++ + ++L+
Sbjct: 125 IIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILE 173
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 253 (94.1 bits), Expect = 6.0e-32, Sum P(2) = 6.0e-32
Identities = 61/175 (34%), Positives = 97/175 (55%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL-ESYKLICESKLKPLYLVALLQS 329
+ SAT+T+ KL + L +P+ + ++Y + L + Y+ + +K K YLV +L
Sbjct: 200 LFSATMTKKVRKLQRACLRNPVKIEAA-SKYSTVDTLKQQYRFVA-AKYKDCYLVYILSE 257
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
+ E ++FT + + T L +L G I I SG QS R L F+ G+ +L
Sbjct: 258 MPESTSMIFTRTCDGTRFLALVLRSLGFRAIPI---SGQMTQSKRLGALNKFKAGECNIL 314
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
V +D +RG+D+ V+ V+NYD P K YIHR GRTARAG+ G +L+++ E+
Sbjct: 315 VCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYEL 369
Score = 163 (62.4 bits), Expect = 6.0e-32, Sum P(2) = 6.0e-32
Identities = 53/155 (34%), Positives = 82/155 (52%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI-APAV 128
+D+ + TGSGKT ++A+PI+Q L P D A FA + +P
Sbjct: 47 KDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRP--DPAF-----FACVLSPTR 99
Query: 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188
L++ +A ++ +IS ++ L GI D L ++VATPGRL DH++
Sbjct: 100 ELAIQIAEQFEALGADIS--LRCAVLVGGI--DRMQQTIALGKRPHVIVATPGRLWDHMS 155
Query: 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
T+GF+L+ L YLV+DE DRLL E ++ L +L+
Sbjct: 156 DTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 268 (99.4 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 66/184 (35%), Positives = 100/184 (54%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 193 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 251
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 252 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 308
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 309 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Query: 441 KDEV 444
+ +V
Sbjct: 369 QYDV 372
Score = 141 (54.7 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 104 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 145
Score = 139 (54.0 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 200
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 201 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 249
Query: 295 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 250 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 307
Query: 354 HF 355
F
Sbjct: 308 KF 309
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 268 (99.4 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 66/184 (35%), Positives = 100/184 (54%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 193 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 251
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 252 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 308
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 309 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Query: 441 KDEV 444
+ +V
Sbjct: 369 QYDV 372
Score = 141 (54.7 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 104 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 145
Score = 139 (54.0 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 200
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 201 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 249
Query: 295 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 250 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 307
Query: 354 HF 355
F
Sbjct: 308 KF 309
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 268 (99.4 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 66/184 (35%), Positives = 100/184 (54%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 195 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 253
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 254 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 310
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 311 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 370
Query: 441 KDEV 444
+ +V
Sbjct: 371 QYDV 374
Score = 141 (54.7 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 49 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 105
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 106 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 147
Score = 139 (54.0 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 147 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 202
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 203 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 251
Query: 295 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 252 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 309
Query: 354 HF 355
F
Sbjct: 310 KF 311
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 261 (96.9 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 63/184 (34%), Positives = 100/184 (54%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y + SK K
Sbjct: 194 KVIPRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYIFIPSKFKD 252
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
YLV +L L ++F S+ +T R LL + G I + G Q+ R +L
Sbjct: 253 SYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQNKRLGSLNK 309
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
F+ +L+++D +RG+D+ V+ V+N+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 310 FKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVT 369
Query: 441 KDEV 444
+ +V
Sbjct: 370 QYDV 373
Score = 147 (56.8 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 38/102 (37%), Positives = 58/102 (56%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ V E I L RD+ + TGSGKT ++ALPI+Q L + R L ALV+ PTR+
Sbjct: 48 PTKIQV--EAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQR-LFALVLTPTRE 104
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 105 LAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHI 146
Score = 135 (52.6 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 48/158 (30%), Positives = 77/158 (48%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I++ATPGRL+DH+ T+GF L L +LV+DE DR+L ++ + +L++ D +
Sbjct: 146 IIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRK---- 201
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
TFL SA + K +++ ++R P VK +S+ Q KL Q + P
Sbjct: 202 ---TFLFSATMT-KQVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYIFIPSKF 250
Query: 295 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLG 331
Y L E S+ + C + LL++LG
Sbjct: 251 KDSYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLG 288
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 230 (86.0 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
Identities = 60/203 (29%), Positives = 105/203 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T + LA + L +P+ + P + + I ++ + + ALL
Sbjct: 397 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 456
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS-KTLKAFREGKI 386
+ ++FT + + HR+ LL G +++ E G Q+ R + L F++ +I
Sbjct: 457 MRTFTDHVMLFTQTKKQAHRMHILLGLMG---LQVGELHGNLSQTQRXLEALWRFKDEQI 513
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCL 446
+LV++D RG+D+EGV V+N+ P IK Y+HR GRTARAG+ GR +LL +
Sbjct: 514 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLLKEIVKAA 573
Query: 447 VGCLTPLLLCTSDILQRKTRLQK 469
+ +L IL+ + +++K
Sbjct: 574 KAPVKARILPQDVILKFRDKIEK 596
Score = 191 (72.3 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
Identities = 57/176 (32%), Positives = 93/176 (52%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLRALVVLP 109
F + + I GL +D+C + TG+GKT ++ALP+++ L R R LV++P
Sbjct: 231 FKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVP 290
Query: 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169
TR+L +QV V +A QSS+ + I L AG D + L
Sbjct: 291 TRELGIQVHSVTKQLA------------QSSLC--VITTISG--LFAG-GLDVKSQEAAL 333
Query: 170 QSAV-DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
++A DIL+ATPGRL+DH++ F L + L++DE DR+L E ++ + ++++
Sbjct: 334 RAAXPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRM 389
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 268 (99.4 bits), Expect = 3.2e-31, Sum P(2) = 3.2e-31
Identities = 66/184 (35%), Positives = 100/184 (54%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 219 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 277
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 278 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 334
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 335 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 394
Query: 441 KDEV 444
+ +V
Sbjct: 395 QYDV 398
Score = 140 (54.3 bits), Expect = 3.2e-31, Sum P(2) = 3.2e-31
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 73 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 129
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 130 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHI 171
Score = 139 (54.0 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 171 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 226
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 227 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 275
Query: 295 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 276 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 333
Query: 354 HF 355
F
Sbjct: 334 KF 335
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 266 (98.7 bits), Expect = 3.5e-31, Sum P(2) = 3.5e-31
Identities = 65/184 (35%), Positives = 100/184 (54%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y + SK K
Sbjct: 193 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYIFIPSKFKD 251
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 252 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 308
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG+ G+ T +
Sbjct: 309 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT 368
Query: 441 KDEV 444
+ +V
Sbjct: 369 QYDV 372
Score = 140 (54.3 bits), Expect = 3.5e-31, Sum P(2) = 3.5e-31
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 47 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 103
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 104 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHI 145
Score = 138 (53.6 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 55/182 (30%), Positives = 86/182 (47%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 200
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
TFL SA + K +++ ++R P VK +S+ Q KL Q + P
Sbjct: 201 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYIFIPSKF 249
Query: 295 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 250 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 307
Query: 354 HF 355
F
Sbjct: 308 KF 309
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 222 (83.2 bits), Expect = 9.5e-31, Sum P(3) = 9.5e-31
Identities = 57/174 (32%), Positives = 93/174 (53%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
M+ SAT+ L + L++PL + G++ KL + + Y + +S + + L++
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVK 356
Query: 329 SLGEE-KCIVFTSSVESTHRLCTLLNHFGELR-IKIKEYSGLQRQSVRSKTLKAFREGKI 386
G+ KCIVFT + RL FG + K + G Q+ R +TL FR+G
Sbjct: 357 EHGKGGKCIVFTQTKRDADRLA-----FGLAKSYKCEALHGDISQAQRERTLAGFRDGNF 411
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
+LV++D RG+DV V+ V++Y+ P +T++HR GRT RAG+ G L+H
Sbjct: 412 SILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAI-LIH 464
Score = 140 (54.3 bits), Expect = 9.5e-31, Sum P(3) = 9.5e-31
Identities = 40/119 (33%), Positives = 65/119 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
+ P + AL+ GI LFP+Q AV + P + RD+ + TG+GKTL++ +PI+ +
Sbjct: 123 ISPEIVKALKGRGIEKLFPIQKAVLE----PAMEGRDMIGRARTGTGKTLAFGIPIIDKI 178
Query: 95 SNRAVRCLRA-----LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ R LV+ PTR+LA QV+ F AP++ ++ L G + I ++ EL
Sbjct: 179 IKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLD-TICL-YGGTPIGQQMREL 235
Score = 93 (37.8 bits), Expect = 9.5e-31, Sum P(3) = 9.5e-31
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
++EL +D+ V TPGR++D + RG L + ++V+DE D++L+ + + +LQ
Sbjct: 232 MRELNYGIDVAVGTPGRIIDLMK--RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQK 289
Query: 225 TRSDNENRFSDASTFLPSAFGSL 247
+ ++ A+ +PS SL
Sbjct: 290 LPAKRQSMMFSAT--MPSWIRSL 310
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 233 (87.1 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 65/193 (33%), Positives = 93/193 (48%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
+ R K P PR ++ SAT+ D LAQ L P+ + G + Y +
Sbjct: 165 IRRVLKHLP-PRRQTLLFSATMPIDIRTLAQDILVDPVTVQVGTVAPAVTVAHALYPV-- 221
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
E LK L+ LL+ E ++FT + RL L G + G Q+ R
Sbjct: 222 EQHLKTPLLLELLRHTDTESVLIFTRTKHRAKRLGEQLEKAG---YRAASLQGNLSQNRR 278
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
L FR+G Q+LV++D RG+DV V++V+NYD P + YIHR GRT RA + G
Sbjct: 279 QAALDGFRDGTFQILVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGD 338
Query: 435 CFTLLHKDEVCLV 447
FTL+ D+ +V
Sbjct: 339 AFTLVTSDDGAMV 351
Score = 117 (46.2 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 32/112 (28%), Positives = 53/112 (47%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P + + G + P+Q + I + RD+ + TG+GKT ++ALPI+ L
Sbjct: 10 PAVATGIAAAGYETPTPIQA----QAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRLQQ 65
Query: 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+RALV+ PTR+LA Q+ D F + L G + ++ +L
Sbjct: 66 GERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKL 117
Score = 93 (37.8 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
G+ +P+ +Q+L++ +++VA PGRL+DHI A L L LV+DE D++
Sbjct: 107 GVGVNPQ--VQKLKAGAEVVVACPGRLLDHI-AQGTIDLSRLEVLVLDEADQM 156
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 212 (79.7 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 70/237 (29%), Positives = 112/237 (47%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 341 GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLE 400
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS +S LLN+ + + + G
Sbjct: 401 QGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNY---IDLPVLAIHGR 457
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+Q+ R+ T F +L+ +D RG+D+ V+ +V YD P K YIHR GRTAR
Sbjct: 458 QKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR 517
Query: 429 A-GQLGRCFTLLHKDEVCLVGCLTPLLLCTSDI---LQRKTRLQKSKSRLRHKNYAL 481
G +LH +E+ + L + S+ + + +Q +L KNY L
Sbjct: 518 GLNGRGHALLILHPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFL 574
Score = 132 (51.5 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 295 QKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP 354
Query: 227 SDNENR-FSDAST 238
+ + FS T
Sbjct: 355 TRRQTMLFSATQT 367
Score = 114 (45.2 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 44/152 (28%), Positives = 73/152 (48%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVAVW 59
+E + +P LP + FED L L + LK A++ MG +++ +Q
Sbjct: 155 DEEEDSEVPSLPLGLT----GAFEDTSFASLSSLVNENTLK-AIKEMGFTNMTEIQ---- 205
Query: 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQ 116
++I P L RDL + TGSGKTL++ +P V+ + L++ PTR+LA+Q
Sbjct: 206 HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPRNGTGVLILSPTRELAMQ 265
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
V + + GL +G S+ + E +L
Sbjct: 266 TFGVLKELMMYHVHTYGLIMGGSNRSAEAQKL 297
>UNIPROTKB|F1N533 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
Length = 670
Score = 204 (76.9 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 69/237 (29%), Positives = 111/237 (46%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 342 GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLE 401
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS +S LLN+ + + + G
Sbjct: 402 QGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNY---IDLPVLAIHGR 458
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+Q+ R+ T F +L+ +D RG+D+ V+ +V YD P K YIHR GRTAR
Sbjct: 459 QKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR 518
Query: 429 A-GQLGRCFTLLHKDEVCLVGCLTPLLLCTSDI---LQRKTRLQKSKSRLRHKNYAL 481
G +L +E+ + L + S+ + + +Q +L KNY L
Sbjct: 519 GLNGRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFL 575
Score = 132 (51.5 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 296 QKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP 355
Query: 227 SDNENR-FSDAST 238
+ + FS T
Sbjct: 356 TRRQTMLFSATQT 368
Score = 122 (48.0 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 45/152 (29%), Positives = 74/152 (48%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVAVW 59
+E + +P LP + FED D L L + LK A++ MG +++ +Q
Sbjct: 156 DEGEDSEVPSLPLGLT----GAFEDTSFDSLTNLVNENTLK-AIKEMGFTNMTEIQ---- 206
Query: 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQ 116
++I P L RDL + TGSGKTL++ +P V+ + L++ PTR+LA+Q
Sbjct: 207 HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPRNGTGVLILSPTRELAMQ 266
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
V + + GL +G S+ + E +L
Sbjct: 267 TFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 298
>UNIPROTKB|F1MSX0 [details] [associations]
symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
Length = 674
Score = 204 (76.9 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 69/237 (29%), Positives = 111/237 (46%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 346 GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLE 405
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS +S LLN+ + + + G
Sbjct: 406 QGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNY---IDLPVLAIHGR 462
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+Q+ R+ T F +L+ +D RG+D+ V+ +V YD P K YIHR GRTAR
Sbjct: 463 QKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR 522
Query: 429 A-GQLGRCFTLLHKDEVCLVGCLTPLLLCTSDI---LQRKTRLQKSKSRLRHKNYAL 481
G +L +E+ + L + S+ + + +Q +L KNY L
Sbjct: 523 GLNGRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFL 579
Score = 132 (51.5 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 300 QKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP 359
Query: 227 SDNENR-FSDAST 238
+ + FS T
Sbjct: 360 TRRQTMLFSATQT 372
Score = 122 (48.0 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 45/152 (29%), Positives = 74/152 (48%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVAVW 59
+E + +P LP + FED D L L + LK A++ MG +++ +Q
Sbjct: 160 DEGEDSEVPSLPLGLT----GAFEDTSFDSLTNLVNENTLK-AIKEMGFTNMTEIQ---- 210
Query: 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQ 116
++I P L RDL + TGSGKTL++ +P V+ + L++ PTR+LA+Q
Sbjct: 211 HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPRNGTGVLILSPTRELAMQ 270
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
V + + GL +G S+ + E +L
Sbjct: 271 TFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 302
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 201 (75.8 bits), Expect = 2.2e-30, Sum P(3) = 2.2e-30
Identities = 71/237 (29%), Positives = 110/237 (46%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETR-YKLPERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 334 GFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLE 393
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS S LLN+ + + + G
Sbjct: 394 QGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNY---IDLPVLAIHGK 450
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+Q+ R+ T F +L+ +D RG+D+ V+ +V YD P K YIHR GRTAR
Sbjct: 451 QKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR 510
Query: 429 A-GQLGRCFTLLHKDEVCLVGCL--TPLLLCTSDILQRKTR-LQKSKSRLRHKNYAL 481
G +L +E+ + L + + L D K +Q +L KNY L
Sbjct: 511 GLNGRGHALLILRPEELGFLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKLIEKNYFL 567
Score = 132 (51.5 bits), Expect = 2.2e-30, Sum P(3) = 2.2e-30
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 287 VQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 346
Query: 226 RSDNENR-FSDAST 238
+ + FS T
Sbjct: 347 PARRQTMLFSATQT 360
Score = 123 (48.4 bits), Expect = 2.2e-30, Sum P(3) = 2.2e-30
Identities = 45/155 (29%), Positives = 77/155 (49%)
Query: 1 MEEAKKKSMPVLPWMRSPVDVS-LFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVA 57
++EA +P LP + V+ FED L L + LK A++ MG + +Q
Sbjct: 147 VKEADDSEVPSLP-----LGVTGAFEDTSFASLSNLVNENTLK-AIEEMGFKHMTEIQ-- 198
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLA 114
++I P L RDL + TGSGKTL++ +P+++ + L++ PTR+LA
Sbjct: 199 --HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTGVLILSPTRELA 256
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+Q V + + GL +G S+ + E+ +L+
Sbjct: 257 MQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLL 291
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 201 (75.8 bits), Expect = 2.5e-30, Sum P(3) = 2.5e-30
Identities = 71/237 (29%), Positives = 110/237 (46%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETR-YKLPERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 346 GFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLE 405
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS S LLN+ + + + G
Sbjct: 406 QGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNY---IDLPVLAIHGK 462
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+Q+ R+ T F +L+ +D RG+D+ V+ +V YD P K YIHR GRTAR
Sbjct: 463 QKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR 522
Query: 429 A-GQLGRCFTLLHKDEVCLVGCL--TPLLLCTSDILQRKTR-LQKSKSRLRHKNYAL 481
G +L +E+ + L + + L D K +Q +L KNY L
Sbjct: 523 GLNGRGHALLILRPEELGFLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKLIEKNYFL 579
Score = 132 (51.5 bits), Expect = 2.5e-30, Sum P(3) = 2.5e-30
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 299 VQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 358
Query: 226 RSDNENR-FSDAST 238
+ + FS T
Sbjct: 359 PARRQTMLFSATQT 372
Score = 123 (48.4 bits), Expect = 2.5e-30, Sum P(3) = 2.5e-30
Identities = 45/155 (29%), Positives = 77/155 (49%)
Query: 1 MEEAKKKSMPVLPWMRSPVDVS-LFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVA 57
++EA +P LP + V+ FED L L + LK A++ MG + +Q
Sbjct: 159 VKEADDSEVPSLP-----LGVTGAFEDTSFASLSNLVNENTLK-AIEEMGFKHMTEIQ-- 210
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLA 114
++I P L RDL + TGSGKTL++ +P+++ + L++ PTR+LA
Sbjct: 211 --HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTGVLILSPTRELA 268
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
+Q V + + GL +G S+ + E+ +L+
Sbjct: 269 MQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLL 303
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 201 (75.8 bits), Expect = 2.8e-30, Sum P(3) = 2.8e-30
Identities = 71/237 (29%), Positives = 110/237 (46%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETR-YKLPERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 332 GFEEELKQIIKLLPARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLE 391
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS S LLN+ + + + G
Sbjct: 392 QGYVVCPSEKRFLLLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNY---IDLPVLAIHGK 448
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+Q+ R+ T F +L+ +D RG+D+ V+ +V YD P K YIHR GRTAR
Sbjct: 449 QKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR 508
Query: 429 A-GQLGRCFTLLHKDEVCLVGCL--TPLLLCTSDILQRKTR-LQKSKSRLRHKNYAL 481
G +L +E+ + L + + L D K +Q +L KNY L
Sbjct: 509 GLNGRGHALLILRPEELGFLRYLKQSKVPLNQFDFSWSKVSDIQSQLEKLIEKNYFL 565
Score = 133 (51.9 bits), Expect = 2.8e-30, Sum P(3) = 2.8e-30
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 285 VQKLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 344
Query: 226 RSDNENR-FSDAST 238
+ + FS T
Sbjct: 345 PARRQTMLFSATQT 358
Score = 121 (47.7 bits), Expect = 2.8e-30, Sum P(3) = 2.8e-30
Identities = 43/154 (27%), Positives = 77/154 (50%)
Query: 2 EEAKKKSMPVLPWMRSPVDVS-LFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVAV 58
++ KK +P + P+ ++ FED L L + LK A++ MG + +Q
Sbjct: 143 DDVKKADDSEVPSL--PLGLTGAFEDTSFASLSNLVNENTLK-AIEEMGFKRMTEIQ--- 196
Query: 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLAL 115
++I P L RDL + TGSGKTL++ +P+++ + L++ PTR+LA+
Sbjct: 197 -HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTGVLILSPTRELAM 255
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
Q V + + GL +G S+ + E+ +L+
Sbjct: 256 QTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLL 289
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 180 (68.4 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 52/185 (28%), Positives = 91/185 (49%)
Query: 266 RLVKMVLSATLT-QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 324
R M+ SATL + A+ L+ P+ + R K ++ + + + K L+
Sbjct: 178 RKQNMLFSATLEGSGVIRFAREVLNDPIEIDVDAPR-KEKAKIHQWIHLADDKDHKFALL 236
Query: 325 A-LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
LL+ ++ IVF V++ + +L + I G Q R + L F +
Sbjct: 237 CHLLKQEDVKRAIVF---VKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTK 293
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
G++ VL+++D RG+D++ +++V+N+D P TYIHR GRT RAG G +L +
Sbjct: 294 GEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHD 353
Query: 444 VCLVG 448
+ +VG
Sbjct: 354 MRIVG 358
Score = 145 (56.1 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 42/119 (35%), Positives = 63/119 (52%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L +L+ MG L P + QET+ L +RD+ +PTG+GKT S+ LP +Q L
Sbjct: 8 LDPSLLESLKAMG--HLSPTTIQ--QETLPHALEQRDILARAPTGTGKTASFLLPALQHL 63
Query: 95 SNRAVRC---LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
+ R R L++ PTR+LA Q+ +A GL++ + G A + E +K
Sbjct: 64 IDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQ-EEALK 121
Score = 121 (47.7 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 26/84 (30%), Positives = 49/84 (58%)
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
+ G+ Y P++ + L+ +DILVATPGRLM++++ + F+ E + L++DE DR+L
Sbjct: 107 ITGGVPYAPQE--EALKGNIDILVATPGRLMEYLDKGK-FSAESVDILIIDEADRMLDMG 163
Query: 214 YQAWLPTVLQLTRSDNENRFSDAS 237
+ A + + + +N A+
Sbjct: 164 FSAVVKAIALEAQGRKQNMLFSAT 187
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 180 (68.4 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 52/185 (28%), Positives = 91/185 (49%)
Query: 266 RLVKMVLSATLT-QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 324
R M+ SATL + A+ L+ P+ + R K ++ + + + K L+
Sbjct: 178 RKQNMLFSATLEGSGVIRFAREVLNDPIEIDVDAPR-KEKAKIHQWIHLADDKDHKFALL 236
Query: 325 A-LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
LL+ ++ IVF V++ + +L + I G Q R + L F +
Sbjct: 237 CHLLKQEDVKRAIVF---VKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTK 293
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
G++ VL+++D RG+D++ +++V+N+D P TYIHR GRT RAG G +L +
Sbjct: 294 GEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHD 353
Query: 444 VCLVG 448
+ +VG
Sbjct: 354 MRIVG 358
Score = 145 (56.1 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 42/119 (35%), Positives = 63/119 (52%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LDP L +L+ MG L P + QET+ L +RD+ +PTG+GKT S+ LP +Q L
Sbjct: 8 LDPSLLESLKAMG--HLSPTTIQ--QETLPHALEQRDILARAPTGTGKTASFLLPALQHL 63
Query: 95 SNRAVRC---LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
+ R R L++ PTR+LA Q+ +A GL++ + G A + E +K
Sbjct: 64 IDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQ-EEALK 121
Score = 121 (47.7 bits), Expect = 3.5e-30, Sum P(3) = 3.5e-30
Identities = 26/84 (30%), Positives = 49/84 (58%)
Query: 154 LEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
+ G+ Y P++ + L+ +DILVATPGRLM++++ + F+ E + L++DE DR+L
Sbjct: 107 ITGGVPYAPQE--EALKGNIDILVATPGRLMEYLDKGK-FSAESVDILIIDEADRMLDMG 163
Query: 214 YQAWLPTVLQLTRSDNENRFSDAS 237
+ A + + + +N A+
Sbjct: 164 FSAVVKAIALEAQGRKQNMLFSAT 187
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 223 (83.6 bits), Expect = 4.0e-30, Sum P(3) = 4.0e-30
Identities = 55/176 (31%), Positives = 92/176 (52%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
M+ SAT+ L + L++PL + G++ KL + + +Y +I +S + + L+
Sbjct: 285 MMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVT 344
Query: 329 SLGEE-KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ KCIVFT + RL L K + G QS R +TL FR+G
Sbjct: 345 EHAKGGKCIVFTQTKRDADRLSYALAR----SFKCEALHGDISQSQRERTLAGFRDGHFN 400
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
+LV++D RG+DV V+ +++Y+ P +T++HR GRT RAG+ G + +D+
Sbjct: 401 ILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQ 456
Score = 140 (54.3 bits), Expect = 4.0e-30, Sum P(3) = 4.0e-30
Identities = 39/112 (34%), Positives = 60/112 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
+ P + AL + GI LFP+Q AV + P + RD+ + TG+GKTL++ +PI+ +
Sbjct: 111 ISPEIVKALSSKGIEKLFPIQKAVLE----PAMEGRDMIGRARTGTGKTLAFGIPIIDKI 166
Query: 95 SNRAVRCLRA-----LVVLPTRDLALQVKDVFAAIAPAVG---LSVGLAVGQ 138
+ R LV+ PTR+LA QV+ F AP++ L G +GQ
Sbjct: 167 IKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQ 218
Score = 86 (35.3 bits), Expect = 4.0e-30, Sum P(3) = 4.0e-30
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+++L VD+ V TPGR++D + RG L + ++V+DE D++L+ + + +L+
Sbjct: 220 MRQLDYGVDVAVGTPGRVIDLMK--RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEK 277
Query: 225 TRSDNENRFSDASTFLPSAFGSL 247
++ A+ +PS SL
Sbjct: 278 LPEKRQSMMFSAT--MPSWIRSL 298
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 256 (95.2 bits), Expect = 5.0e-30, Sum P(2) = 5.0e-30
Identities = 65/177 (36%), Positives = 96/177 (54%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR K L SAT+T+ KL + L +P+ ++Y+ E+L+ Y L SK K
Sbjct: 192 KVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS-SKYQTVEKLQQYYLFIPSKFKD 250
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
YLV +L L ++F S+ +T R LL + G I + G QS R +L
Sbjct: 251 TYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLH---GQMSQSKRLGSLNK 307
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437
F+ +L+++D +RG+D+ V+ VVN+D P + K YIHR GRTARAG RC++
Sbjct: 308 FKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAG---RCWS 361
Score = 141 (54.7 bits), Expect = 5.0e-30, Sum P(2) = 5.0e-30
Identities = 36/102 (35%), Positives = 56/102 (54%)
Query: 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112
P ++ + E I L RD+ + TGSGKT ++ALPI+ L R L ALV+ PTR+
Sbjct: 46 PTKIQI--EAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR-LFALVLTPTRE 102
Query: 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
LA Q+ + F A+ ++G+ + VG + L K+P +
Sbjct: 103 LAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPHI 144
Score = 139 (54.0 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 56/182 (30%), Positives = 86/182 (47%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
I++ATPGRL+DH+ T+GF L L YLV+DE DR+L ++ + +L++ D +
Sbjct: 144 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK---- 199
Query: 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294
TFL SA + K +++ ++R P VK +S+ Q KL Q L P
Sbjct: 200 ---TFLFSATMT-KKVQK--LQRAALKNP----VKCAVSSKY-QTVEKLQQYYLFIPSKF 248
Query: 295 TTGETRYKLPERL-ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353
Y L E S+ + C + LL++LG I + + RL +L N
Sbjct: 249 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFT-AIPLHGQMSQSKRLGSL-N 306
Query: 354 HF 355
F
Sbjct: 307 KF 308
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 208 (78.3 bits), Expect = 7.5e-30, Sum P(3) = 7.5e-30
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 264 YPRLVKMVLSATLTQDP-NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPL 321
+ R ++ SATL N++A L +PL + G T + + + +C+ K
Sbjct: 177 HKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIG-TAHAEHQDISQRIYLCDHLDHKEA 235
Query: 322 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381
L LL ++ I+FT++ T RL L+ G + SG +Q+ R++ + F
Sbjct: 236 LLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAAL---SGELKQAARNQIMDQF 292
Query: 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
G+ Q+LV++D +RG+D+ V+ V+N+D P + + Y+HR GRT RAG G +L+
Sbjct: 293 ARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350
Score = 151 (58.2 bits), Expect = 7.5e-30, Sum P(3) = 7.5e-30
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ-T 93
LD RL +L++MGI++ P A+ ++ + L +DL +S TGSGKTL++ LP +Q
Sbjct: 8 LDQRLLQSLKHMGIAT--PT--AIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRV 63
Query: 94 LSNRAV--RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+S RA+ R R L++LPTR+LA QV + +G + D+ L K
Sbjct: 64 ISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKE 123
Query: 152 P 152
P
Sbjct: 124 P 124
Score = 81 (33.6 bits), Expect = 7.5e-30, Sum P(3) = 7.5e-30
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
D + L +VATPGR+ DH+ F L L L++DE DR+L + L + +
Sbjct: 115 DQAKALAKEPHFIVATPGRIADHLEQKNLF-LNGLELLILDEADRMLDLGFAPQLKAINE 173
Query: 224 LTRSDNENR 232
+D++ R
Sbjct: 174 A--ADHKRR 180
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 208 (78.3 bits), Expect = 7.5e-30, Sum P(3) = 7.5e-30
Identities = 54/178 (30%), Positives = 93/178 (52%)
Query: 264 YPRLVKMVLSATLTQDP-NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPL 321
+ R ++ SATL N++A L +PL + G T + + + +C+ K
Sbjct: 177 HKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIG-TAHAEHQDISQRIYLCDHLDHKEA 235
Query: 322 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381
L LL ++ I+FT++ T RL L+ G + SG +Q+ R++ + F
Sbjct: 236 LLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAAL---SGELKQAARNQIMDQF 292
Query: 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
G+ Q+LV++D +RG+D+ V+ V+N+D P + + Y+HR GRT RAG G +L+
Sbjct: 293 ARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350
Score = 151 (58.2 bits), Expect = 7.5e-30, Sum P(3) = 7.5e-30
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQ-T 93
LD RL +L++MGI++ P A+ ++ + L +DL +S TGSGKTL++ LP +Q
Sbjct: 8 LDQRLLQSLKHMGIAT--PT--AIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRV 63
Query: 94 LSNRAV--RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+S RA+ R R L++LPTR+LA QV + +G + D+ L K
Sbjct: 64 ISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKE 123
Query: 152 P 152
P
Sbjct: 124 P 124
Score = 81 (33.6 bits), Expect = 7.5e-30, Sum P(3) = 7.5e-30
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
D + L +VATPGR+ DH+ F L L L++DE DR+L + L + +
Sbjct: 115 DQAKALAKEPHFIVATPGRIADHLEQKNLF-LNGLELLILDEADRMLDLGFAPQLKAINE 173
Query: 224 LTRSDNENR 232
+D++ R
Sbjct: 174 A--ADHKRR 180
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 204 (76.9 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 69/237 (29%), Positives = 111/237 (46%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 339 GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLE 398
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS +S LLN+ + + + G
Sbjct: 399 QGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNY---IDLPVLAIHGR 455
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+Q+ R+ T F +L+ +D RG+D+ V+ +V YD P K YIHR GRTAR
Sbjct: 456 QKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR 515
Query: 429 A-GQLGRCFTLLHKDEVCLVGCLTPLLLCTSDI---LQRKTRLQKSKSRLRHKNYAL 481
G +L +E+ + L + S+ + + +Q +L KNY L
Sbjct: 516 GLNGRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFL 572
Score = 132 (51.5 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 293 QKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP 352
Query: 227 SDNENR-FSDAST 238
+ + FS T
Sbjct: 353 TRRQTMLFSATQT 365
Score = 112 (44.5 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 1 MEEAKKKSMPVLPWMRSPVDVS-LFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVA 57
ME+ K +P + P+ ++ FED L L + L+ A++ MG +++ +Q
Sbjct: 149 MEKPDKDDDTEVPSL--PLGLTGAFEDTSFASLTDLVNENTLR-AIKEMGFTNMTEIQ-- 203
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAV--RCLRALVVLPTRDLA 114
++I P L RDL + TGSGKTL++ +P V+ + R + L++ PTR+LA
Sbjct: 204 --HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELA 261
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+Q V + + GL +G S+ + E +L
Sbjct: 262 MQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 295
Score = 49 (22.3 bits), Expect = 4.7e-23, Sum P(3) = 4.7e-23
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 130 LSVGLAVGQSS-IADEISELIKRPKLEAGICYDPEDVLQELQS 171
++ GL+ Q+ ++ E E +K+P ++ I E Q L S
Sbjct: 61 VNAGLSEAQNGDVSKETGENVKKPSKKSSILTSDEAATQSLNS 103
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 204 (76.9 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 69/237 (29%), Positives = 111/237 (46%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 343 GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLE 402
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS +S LLN+ + + + G
Sbjct: 403 QGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNY---IDLPVLAIHGR 459
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+Q+ R+ T F +L+ +D RG+D+ V+ +V YD P K YIHR GRTAR
Sbjct: 460 QKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR 519
Query: 429 A-GQLGRCFTLLHKDEVCLVGCLTPLLLCTSDI---LQRKTRLQKSKSRLRHKNYAL 481
G +L +E+ + L + S+ + + +Q +L KNY L
Sbjct: 520 GLNGRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFL 576
Score = 132 (51.5 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 297 QKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP 356
Query: 227 SDNENR-FSDAST 238
+ + FS T
Sbjct: 357 TRRQTMLFSATQT 369
Score = 112 (44.5 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 1 MEEAKKKSMPVLPWMRSPVDVS-LFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVA 57
ME+ K +P + P+ ++ FED L L + L+ A++ MG +++ +Q
Sbjct: 153 MEKPDKDDDTEVPSL--PLGLTGAFEDTSFASLTDLVNENTLR-AIKEMGFTNMTEIQ-- 207
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAV--RCLRALVVLPTRDLA 114
++I P L RDL + TGSGKTL++ +P V+ + R + L++ PTR+LA
Sbjct: 208 --HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELA 265
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+Q V + + GL +G S+ + E +L
Sbjct: 266 MQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 299
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 204 (76.9 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 69/237 (29%), Positives = 111/237 (46%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 368 GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLE 427
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS +S LLN+ + + + G
Sbjct: 428 QGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNY---IDLPVLAIHGR 484
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+Q+ R+ T F +L+ +D RG+D+ V+ +V YD P K YIHR GRTAR
Sbjct: 485 QKQNKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR 544
Query: 429 A-GQLGRCFTLLHKDEVCLVGCLTPLLLCTSDI---LQRKTRLQKSKSRLRHKNYAL 481
G +L +E+ + L + S+ + + +Q +L KNY L
Sbjct: 545 GLNGRGHALLILRPEELGFLRYLKQSKVPLSEFEFSWSKISDIQSQLEKLIEKNYFL 601
Score = 132 (51.5 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 322 QKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP 381
Query: 227 SDNENR-FSDAST 238
+ + FS T
Sbjct: 382 TRRQTMLFSATQT 394
Score = 112 (44.5 bits), Expect = 1.8e-29, Sum P(3) = 1.8e-29
Identities = 45/154 (29%), Positives = 78/154 (50%)
Query: 1 MEEAKKKSMPVLPWMRSPVDVS-LFEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVA 57
ME+ K +P + P+ ++ FED L L + L+ A++ MG +++ +Q
Sbjct: 178 MEKPDKDDDTEVPSL--PLGLTGAFEDTSFASLTDLVNENTLR-AIKEMGFTNMTEIQ-- 232
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAV--RCLRALVVLPTRDLA 114
++I P L RDL + TGSGKTL++ +P V+ + R + L++ PTR+LA
Sbjct: 233 --HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELA 290
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+Q V + + GL +G S+ + E +L
Sbjct: 291 MQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 324
Score = 49 (22.3 bits), Expect = 5.7e-23, Sum P(3) = 5.7e-23
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 130 LSVGLAVGQSS-IADEISELIKRPKLEAGICYDPEDVLQELQS 171
++ GL+ Q+ ++ E E +K+P ++ I E Q L S
Sbjct: 90 VNAGLSEAQNGDVSKETGENVKKPSKKSSILTSDEAATQSLNS 132
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 200 (75.5 bits), Expect = 3.0e-29, Sum P(3) = 3.0e-29
Identities = 64/218 (29%), Positives = 104/218 (47%)
Query: 270 MVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALL 327
M+ SAT T+ LA++ L PL++ + + E LE ++C S+ + L L L
Sbjct: 343 MLFSATQTRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLFTFL 402
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ ++K +VF SS S LLN+ + + + G Q+Q+ R+ T F
Sbjct: 403 KKNRKKKLMVFFSSCMSVKFHYELLNY---IDLPVMAIHGKQKQTKRTTTFFQFCNADSG 459
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQLGRCFTLLHKDEVCL 446
+L+ +D RG+D+ V+ +V +D P K YIHR GRTAR G +L +E+
Sbjct: 460 ILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGINGRGHALLILRPEELGF 519
Query: 447 VGCLTPLLLCTSDILQRKTRL---QKSKSRLRHKNYAL 481
+ L + S+ T++ Q +L KNY L
Sbjct: 520 LRFLKQAKVPLSEFEFSWTKISDIQSQLDKLIEKNYYL 557
Score = 140 (54.3 bits), Expect = 3.0e-29, Sum P(3) = 3.0e-29
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + V+ILVATPGRL+DH+ T GF ++L L++DE DR+L ++ L +++L
Sbjct: 278 QKLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLP 337
Query: 227 SDNENR-FSDAST 238
++ FS T
Sbjct: 338 KKRQSMLFSATQT 350
Score = 105 (42.0 bits), Expect = 3.0e-29, Sum P(3) = 3.0e-29
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLR 103
G+ + F + +TI P L RD+ + TGSGKTL++ +P ++ + R
Sbjct: 175 GVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLKFMPRNGT 234
Query: 104 ALVVL-PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
++VL PTR+LA+Q V + + GL +G S+ + E +L
Sbjct: 235 GVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 280
Score = 47 (21.6 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 116 QVKDVF--AAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
+VKDV + +A +V + Q S++DE++E ++PK
Sbjct: 37 EVKDVLDESEVASDSAPNV-IEEQQQSVSDEVNETSQKPK 75
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 231 (86.4 bits), Expect = 3.3e-29, Sum P(2) = 3.3e-29
Identities = 55/169 (32%), Positives = 86/169 (50%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+ SAT+T KL + LH+P+ + ++Y+ + L ++ K L+ LL
Sbjct: 302 LFSATMTNKIEKLQRASLHNPVRVAVS-SKYQTADNLVQSMMLVNDGYKNTILIHLLNEF 360
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
+ IVFT +V R L G + + G QS R +L F+ + +LV
Sbjct: 361 MGKSIIVFTRTVAHAQRTALLARILGFNAVPLH---GQLSQSQRLGSLNKFKSNQANILV 417
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
++D RG+D+ V+ V+NYD P K YIHR GRTARAG+ G+ +L+
Sbjct: 418 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLI 466
Score = 166 (63.5 bits), Expect = 3.3e-29, Sum P(2) = 3.3e-29
Identities = 44/136 (32%), Positives = 76/136 (55%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P L ++++M + P+Q E I L +D+ + TGSGKT ++A+PI+Q+L
Sbjct: 130 LVPDLLESIESMKFTKPTPIQ----SEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSL 185
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ A + ALV+ PTR+L Q+KD F A+ ++GL VG + D+ +L+++P +
Sbjct: 186 WH-AQQPYFALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHV 244
Query: 155 EAGICYDPEDVLQELQ 170
I P ++ L+
Sbjct: 245 ---IVATPGRIMDHLE 257
Score = 139 (54.0 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 220
D D ++L ++VATPGR+MDH+ T+GF+L++L YLV+DE DRLL + L
Sbjct: 230 DMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDK 289
Query: 221 VLQL 224
+L++
Sbjct: 290 ILKV 293
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 216 (81.1 bits), Expect = 4.0e-29, Sum P(2) = 4.0e-29
Identities = 63/188 (33%), Positives = 98/188 (52%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT-TGETRYKLPERLESYKLI 313
VE ++ P R M+ SAT+ KLA+ L +PL + G+ KL E ++ Y +
Sbjct: 273 VESILENLPTKRQ-SMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIA 331
Query: 314 CESKLKPLYLVALLQSLGEE-KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 372
S K L L+ + K IVFT + + L++ I + G Q
Sbjct: 332 TTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN----SIATEALHGDISQH 387
Query: 373 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432
R +TL AFR+GK VLV++D +RG+D+ V+ V++Y+ P +T++HR+GRT RAG+
Sbjct: 388 QRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKE 447
Query: 433 GRCFTLLH 440
G L+H
Sbjct: 448 GSAI-LMH 454
Score = 187 (70.9 bits), Expect = 4.0e-29, Sum P(2) = 4.0e-29
Identities = 64/198 (32%), Positives = 101/198 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L RL+ +L+ GI+ LFP+Q AV + P L RD+ + TG+GKTL++ +PI++ L
Sbjct: 109 LPQRLEESLEKRGITHLFPIQRAV----LVPALQGRDIIARAKTGTGKTLAFGIPIIKRL 164
Query: 95 SN---------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
+ R+ R + LV+ PTR+LA QV+ AP LS G +
Sbjct: 165 TEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPY--LSTVCVYGG------V 216
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
S I++ L G VD++V TPGR++D I R L + YLV+DE
Sbjct: 217 SYTIQQSALTRG---------------VDVVVGTPGRIIDLIEG-RSLKLGEVEYLVLDE 260
Query: 206 TDRLLREAYQAWLPTVLQ 223
D++L ++ + ++L+
Sbjct: 261 ADQMLAVGFEEAVESILE 278
>UNIPROTKB|Q9NVP1 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
Uniprot:Q9NVP1
Length = 670
Score = 201 (75.8 bits), Expect = 4.2e-29, Sum P(3) = 4.2e-29
Identities = 71/237 (29%), Positives = 110/237 (46%)
Query: 254 GVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP-ERLE 308
G E K K P R M+ SAT T+ LA++ L PL++ + + + LE
Sbjct: 342 GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLE 401
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368
++C S+ + L L L+ ++K +VF SS S LLN+ + + + G
Sbjct: 402 QGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNY---IDLPVLAIHGK 458
Query: 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428
Q+Q+ R+ T F L+ +D RG+D+ V+ +V YD P K YIHR GRTAR
Sbjct: 459 QKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR 518
Query: 429 A-GQLGRCFTLLHKDEVCLVGCL--TPLLLCTSDILQRK-TRLQKSKSRLRHKNYAL 481
G +L +E+ + L + + L D K + +Q +L KNY L
Sbjct: 519 GLNGRGHALLILRPEELGFLRYLKQSKVPLSEFDFSWSKISDIQSQLEKLIEKNYFL 575
Score = 132 (51.5 bits), Expect = 4.2e-29, Sum P(3) = 4.2e-29
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ L +++L
Sbjct: 296 QKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP 355
Query: 227 SDNENR-FSDAST 238
+ + FS T
Sbjct: 356 TRRQTMLFSATQT 368
Score = 111 (44.1 bits), Expect = 4.2e-29, Sum P(3) = 4.2e-29
Identities = 41/130 (31%), Positives = 67/130 (51%)
Query: 24 FEDCPLDHLPCL--DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSG 81
FED L L + LK A++ MG +++ +Q ++I P L RDL + TGSG
Sbjct: 174 FEDTSFASLCNLVNENTLK-AIKEMGFTNMTEIQ----HKSIRPLLEGRDLLAAAKTGSG 228
Query: 82 KTLSYALPIVQTLSN-RAV--RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138
KTL++ +P V+ + R + L++ PTR+LA+Q V + + GL +G
Sbjct: 229 KTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGG 288
Query: 139 SSIADEISEL 148
S+ + E +L
Sbjct: 289 SNRSAEAQKL 298
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 252 (93.8 bits), Expect = 5.6e-29, Sum P(2) = 5.6e-29
Identities = 62/177 (35%), Positives = 101/177 (57%)
Query: 270 MVLSATLTQDPNKLAQLDLHHP--LFLTTG-ETRYKLPERLESYKLICESKLKPLYLVAL 326
++ SAT+T++ ++LA + L P +F+ +T KL + + E+ + + + AL
Sbjct: 329 LLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAM-VAAL 387
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
+ + IVF + + R+ LL G L IK+ + Q R ++L F++ +I
Sbjct: 388 VTRTFQTNTIVFVRTKKDCQRMQILL---GLLGIKVGQMQSSLTQGQRIESLSKFKKAEI 444
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
VLVS+D +RG+D+EGV V+N + P IK YIHR GRTARAG+ GR +L+ +DE
Sbjct: 445 DVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDE 501
Score = 146 (56.5 bits), Expect = 5.6e-29, Sum P(2) = 5.6e-29
Identities = 37/105 (35%), Positives = 56/105 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L ++ A G S P+Q Q I L +D+C + TG+GKT ++ LPI++ +
Sbjct: 155 LSRQILKACSGAGYSDPTPIQ----QACIPVALTGKDICACAATGTGKTAAFVLPILERM 210
Query: 95 SNR--AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
R C R LV++PTR+LA+QV VF ++ + L V L G
Sbjct: 211 IYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAG 255
Score = 137 (53.3 bits), Expect = 4.9e-28, Sum P(2) = 4.9e-28
Identities = 35/107 (32%), Positives = 62/107 (57%)
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDV-LQE--LQSAVDILVATPGRLMDHINAT 190
LA+ + ++S I+ LE +C D+ QE L+S D++VATPGRL+DH++ +
Sbjct: 231 LAIQVFQVFRKLSTFIQ---LEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHNS 287
Query: 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
F L ++ LV+DE DR+L EA++ + +++L + + A+
Sbjct: 288 PSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTLLFSAT 334
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 237 (88.5 bits), Expect = 5.6e-29, Sum P(3) = 5.6e-29
Identities = 58/186 (31%), Positives = 98/186 (52%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT +LAQ L P+ + G + ++ K ++ A + S
Sbjct: 423 VMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFIDS 482
Query: 330 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ ++K I+F S L + L G RI ++ G + QS R + LK+F+ GK+++
Sbjct: 483 MSPKDKVIIFVSRKAVADHLSSDL---GIRRISVESLHGNREQSDRERALKSFKTGKVRI 539
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVG 448
L+++D +RG+DV V +V NYD P I+ Y+HR GRT RAG+ G TL+ +++ + G
Sbjct: 540 LIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAG 599
Query: 449 CLTPLL 454
L +L
Sbjct: 600 ELINIL 605
Score = 107 (42.7 bits), Expect = 5.6e-29, Sum P(3) = 5.6e-29
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 220
D + +++L DI++ATPGRL D + L+ + YLV+DE D++L ++ +
Sbjct: 353 DRDGQIKDLSKGADIIIATPGRLHD-LQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMK 411
Query: 221 VLQLTRSDNENRFSDAS 237
+L R D + + A+
Sbjct: 412 ILLDVRPDRQTVMTSAT 428
Score = 93 (37.8 bits), Expect = 5.6e-29, Sum P(3) = 5.6e-29
Identities = 33/93 (35%), Positives = 45/93 (48%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
D C P + ++ G P+Q W I G+ DL + TG+GKTLSY +P
Sbjct: 244 DAFHCY-PEVMRNIEKAGFQKPTPIQSQAWP-IILQGI---DLIGVAQTGTGKTLSYLMP 298
Query: 90 -IV----QTLSNRAVRCLRALVVLPTRDLALQV 117
+ Q + RA LV+ PTR+LALQV
Sbjct: 299 GFIHIDSQPVLQRARNGPGMLVLTPTRELALQV 331
>RGD|621743 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:621743
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
CTD:11056 GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AB055628 IPI:IPI00201365 RefSeq:NP_445977.1 UniGene:Rn.18605
ProteinModelPortal:Q99PT0 SMR:Q99PT0 PRIDE:Q99PT0
Ensembl:ENSRNOT00000003600 GeneID:85432 KEGG:rno:85432
InParanoid:Q99PT0 NextBio:617542 Genevestigator:Q99PT0
GermOnline:ENSRNOG00000002612 Uniprot:Q99PT0
Length = 598
Score = 216 (81.1 bits), Expect = 9.6e-29, Sum P(3) = 9.6e-29
Identities = 62/200 (31%), Positives = 99/200 (49%)
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 324
P++ + + SAT D + +L+L + + ++ G R E +E L S+ L +
Sbjct: 346 PKVRRAMFSATFAYDVEQWCKLNLDNIVSVSIG-ARNSAVETVEQELLFVGSETGKLLAM 404
Query: 325 ALLQSLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L G +VF S+E L L + G + + + Q+Q R T+ +FR
Sbjct: 405 RELVKKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHAERTQQQ--RDNTVHSFRA 461
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
GKI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 462 GKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDD 521
Query: 444 VCLVGCLTPLLLCTSDILQR 463
PLL ++++Q+
Sbjct: 522 -------KPLLRSVANVIQQ 534
Score = 151 (58.2 bits), Expect = 9.6e-29, Sum P(3) = 9.6e-29
Identities = 41/125 (32%), Positives = 69/125 (55%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P ++ F+ LD + PRL LQN+ + + F V + + I L R+L ++P
Sbjct: 158 PDPIATFQQ--LDQEYKISPRL---LQNI-LDAGFQVPTPIQMQAIPVMLHGRELLASAP 211
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
TGSGKTL++++PI+ L + RALV+ PTR+LA Q+ I+ G + + +
Sbjct: 212 TGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKISEGTGFRIHM-IH 270
Query: 138 QSSIA 142
+++IA
Sbjct: 271 KAAIA 275
Score = 69 (29.3 bits), Expect = 9.6e-29, Sum P(3) = 9.6e-29
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 288 DILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSPK 347
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 348 VRRAMFSATF 357
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 230 (86.0 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 60/209 (28%), Positives = 106/209 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ +A+ +LAQ L P+ + G ++ ++ + K + LQS
Sbjct: 383 VMTTASWPDSTRRLAQSYLKQPMIVYVGTLDLVTVNTVKQNIIVTTEEEKRSLVKEFLQS 442
Query: 330 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
L ++K IVF S L + L+ G I ++ G + QS R + L+ FR G++++
Sbjct: 443 LSPKDKVIVFVSRKLVADDLSSDLSIQG---IPVQSLHGDREQSDRDQALEDFRTGRVKI 499
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVG 448
L+++D RG+DV V +V NY+ P I+ Y+HR GRT RAG++G TL+ +D+ +
Sbjct: 500 LIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITLVTQDDWKIAD 559
Query: 449 CLTPLLLCTSDILQRKTRLQKSKSRLRHK 477
L +L + I+ R + + +HK
Sbjct: 560 ELIKILQRANQIVPPSLRSMADRFKKQHK 588
Score = 109 (43.4 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+Q++ VDI++ATPGRL D + L + YLV+DE D++L ++ + +L
Sbjct: 318 IQDVTKGVDIIIATPGRLND-LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDV 376
Query: 226 RSDNENRFSDAS 237
R D + + AS
Sbjct: 377 RPDRQTVMTTAS 388
Score = 95 (38.5 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLS 95
P + +++ G P+Q W I G+ DL + TG+GKTLSY +P + S
Sbjct: 210 PEIMQSIRRAGFQKPTPIQSQSWP-IILQGI---DLIGIAQTGTGKTLSYLMPGFIHIHS 265
Query: 96 NRAVRCLR----ALVVLPTRDLALQVK 118
R R LV+ PTR+LALQV+
Sbjct: 266 QPVSRKQRNGPGMLVLTPTRELALQVE 292
>CGD|CAL0001062 [details] [associations]
symbol:orf19.3704 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001062 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000217 EMBL:AACQ01000216 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_711043.1 RefSeq:XP_711056.1 ProteinModelPortal:Q59MW2
STRING:Q59MW2 GeneID:3647328 GeneID:3647350 KEGG:cal:CaO19.11188
KEGG:cal:CaO19.3704 KO:K14807 Uniprot:Q59MW2
Length = 606
Score = 338 (124.0 bits), Expect = 1.1e-28, P = 1.1e-28
Identities = 93/282 (32%), Positives = 151/282 (53%)
Query: 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 229
+S DI+V+TPGRL++H+ L L YL++DE DRLL +++Q W VL L + D+
Sbjct: 298 KSVPDIIVSTPGRLVEHL-LNDSINLSSLQYLIIDEADRLLNQSFQNW-SNVL-LDKIDS 354
Query: 230 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289
+ ++ + + V+ K+V SATLT D KL+ L +
Sbjct: 355 QINIAE--------------VWKLSVQ------------KLVFSATLTTDAGKLSSLKFY 388
Query: 290 HPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVALLQSLGE-EKCIVFT 339
+P + +++ + +P L +K+ + ++ LKPL L L S + ++FT
Sbjct: 389 NPRLIIVNDSKQLVNEIFTVPVTLSEFKIHLGVAKNSLKPLILTKFLISTNKLSNVLIFT 448
Query: 340 SSVESTHRLCTLL-NHFGELRIKIKEY---SGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395
S ES+ RL LL + F +L I +K S R S+RSK LK F ++ +L+++D +
Sbjct: 449 KSNESSIRLTELLISLFQKLSINLKIAFINSTNNRTSIRSKILKQFSNQEVNILITTDLI 508
Query: 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437
RG+DV + +V+NYD P + Y+HR GRTARA Q+G ++
Sbjct: 509 ARGIDVASITDVINYDLPNSSREYVHRVGRTARANQVGYAYS 550
Score = 165 (63.1 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 58/224 (25%), Positives = 104/224 (46%)
Query: 13 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER-- 70
P SP D F D L +K L+ MG + F VQ++V + P + +
Sbjct: 160 PQYASPSDKKAFTDFKLSSF-----MIK-NLEKMGFTEAFSVQISVLNMML-PEIEAQKL 212
Query: 71 ------DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124
D+ +N+ TGSGKTL+Y++PI+++L R V +R ++++PT+ L QVK +
Sbjct: 213 KPDRVGDILVNASTGSGKTLAYSIPIIESLYRRVVPRVRVIILVPTKPLINQVKSTLLQL 272
Query: 125 APAVGLSVGLAVGQSSIADEISELIKR-PKLEAGICYDPEDVLQELQSAVDILVATPGRL 183
+ L + SI DE L K P + I P +++ L + L + +
Sbjct: 273 SSGTNLQIAALKNDVSINDEKDSLTKSVPDI---IVSTPGRLVEHLLNDSINLSSLQYLI 329
Query: 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227
+D + + ++ +++D+ D + A + W +V +L S
Sbjct: 330 IDEADRLLNQSFQNWSNVLLDKIDSQINIA-EVWKLSVQKLVFS 372
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 218 (81.8 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 62/200 (31%), Positives = 100/200 (50%)
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 324
P++ + + SAT D + +L+L + + ++ G R E +E L S+ L +
Sbjct: 346 PKVRRAMFSATFAYDVEQWCKLNLDNVVSVSIG-ARNSAVETVEQELLFVGSETGKLLAM 404
Query: 325 ALLQSLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L G + +VF S+E L L + G + + + Q+Q R T+ +FR
Sbjct: 405 RELVKKGFKPPVLVFVQSIERAKELFHELIYEG-INVDVIHAERTQQQ--RDNTVHSFRA 461
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
GKI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 462 GKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDD 521
Query: 444 VCLVGCLTPLLLCTSDILQR 463
PLL ++++Q+
Sbjct: 522 -------KPLLRSVANVIQQ 534
Score = 145 (56.1 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 38/118 (32%), Positives = 64/118 (54%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F V + + I L R+L ++PTGSGKTL
Sbjct: 160 PIATFQQLDQEYKINSRLLQNI-LDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTL 218
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
++++PI+ L + RALV+ PTR+LA Q+ I+ G + + + +++IA
Sbjct: 219 AFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKISEGTGFRIHM-IHKAAIA 275
Score = 72 (30.4 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ + G L ++ +LVVDE+D+L + ++ L ++ S
Sbjct: 288 DILVTTPNRLIYLLKQDPPGIDLTNVEWLVVDESDKLFEDGKTGFREQLASIFLACTSPK 347
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 348 VRRAMFSATF 357
Score = 41 (19.5 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQE 168
Q ++ + ++IK+P IC P+ L++
Sbjct: 547 QKLLSKQKKKMIKKPLERESICTTPKYFLEQ 577
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 247 (92.0 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 59/174 (33%), Positives = 93/174 (53%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330
+ SAT+T KL + L +P+ + ++Y+ + L L K K YL +L L
Sbjct: 298 LFSATMTSKVAKLQRASLVNPVKVQVA-SKYQTVDTLLQQYLFVPFKYKDCYLAYILNEL 356
Query: 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390
I+FTS+ S+ ++ +L + G I I +G Q R +L F++G +LV
Sbjct: 357 AGNLTIIFTSTCASSTKIAMMLRNLGFGAIPI---NGDMDQGKRLASLNKFKQGTKSILV 413
Query: 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
++D RG+D+ V+ V+NYD P K Y+HR GRTARAG GR T++ + +V
Sbjct: 414 ATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDV 467
Score = 143 (55.4 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 45/155 (29%), Positives = 77/155 (49%)
Query: 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCIN 75
+S + +E+ + L + P++ A +G + P ++ +E+I L RD+
Sbjct: 108 KSEEEEKKYENVTFESLG-VHPQIIDACNKLGFNK--PKEIQ--RESIPWALKGRDIIGL 162
Query: 76 SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 135
+ TGSGKT ++ +P++Q L A + L L + PTR+LA Q+ D F AI +G+ +
Sbjct: 163 AQTGSGKTAAFVIPVLQKLLE-APQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVL 221
Query: 136 VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170
VG + L K+P + G P VL L+
Sbjct: 222 VGGIDSMSQSLALAKKPHVVVG---SPGRVLHHLE 253
Score = 117 (46.2 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 38/138 (27%), Positives = 65/138 (47%)
Query: 104 ALVVLPTRDLALQV-KDVFA-AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161
A V+P L+ + +F A+AP L+ +A ++I I +K L GI D
Sbjct: 171 AAFVIPVLQKLLEAPQGLFCLALAPTRELAYQIADQFNAIGSTIG--VKTCVLVGGI--D 226
Query: 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTV 221
L ++V +PGR++ H+ T+GF L + Y ++DE DRL ++ + +
Sbjct: 227 SMSQSLALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNI 286
Query: 222 LQ-LTRSDNENRFSDAST 238
L+ + + N FS T
Sbjct: 287 LKVIPKERNTYLFSATMT 304
Score = 43 (20.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 332 EEKCIVFTSSVESTHRLCT 350
EE ++F V+ HR+ T
Sbjct: 488 EETVLIFLERVQEAHRIAT 506
>UNIPROTKB|E2R316 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 Ensembl:ENSCAFT00000035837 Uniprot:E2R316
Length = 483
Score = 208 (78.3 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 66/213 (30%), Positives = 102/213 (47%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L++ +EK ++F S+ L + +KI G + R+K FR+
Sbjct: 260 HFLRNHKQEKHLIFFSTCACVEYYGKALEALVK-SVKIMCIHGKMKHK-RNKIFMEFRKL 317
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 QSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLPMEE 377
Query: 445 CLVGCLTPLLLCTSDILQRKTRLQKSKSRLRHK 477
V L C LQ + +LQK+ L K
Sbjct: 378 SYVTFLEINQKCP---LQ-EMKLQKNTGDLLPK 406
Score = 184 (69.8 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 71/221 (32%), Positives = 109/221 (49%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ AL +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPTQLHPQVLGALGQLGFPHMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIAD 143
PI++ L R + + A+++ PTR+LA+QV +V A + S L +G + AD
Sbjct: 66 PILEILLRREEKLKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPAD 125
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHL 198
++S R K + G +I+VATPGRL D G L + L
Sbjct: 126 DVS----RFKEQGG----------------NIIVATPGRLEDMFRRKVEGLDLASCVKSL 165
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL ++A + T+L+ L + FS T
Sbjct: 166 EVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 206
>ZFIN|ZDB-GENE-060623-1 [details] [associations]
symbol:ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
52" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060623-1
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11056 HOVERGEN:HBG051332 KO:K14779
OrthoDB:EOG4XKV6Q EMBL:BC117610 IPI:IPI00627696
RefSeq:NP_001037780.1 UniGene:Dr.13799 ProteinModelPortal:Q1ECZ5
STRING:Q1ECZ5 GeneID:407696 KEGG:dre:407696 NextBio:20818558
Uniprot:Q1ECZ5
Length = 606
Score = 216 (81.1 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
Identities = 62/215 (28%), Positives = 106/215 (49%)
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYL 323
P + +++ SAT D + +L+L + + ++ G R E +E L S+ K L +
Sbjct: 347 PNVRRVLFSATFATDVERWCKLNLDNLVSVSIG-ARNSAAETVEQQLLFVGSENGKILAM 405
Query: 324 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L++ +VF S++ L L + G + + + Q+Q R + +FR
Sbjct: 406 RNLIKQGFLPPVLVFVQSIDRARELYHELVYEG-INVDVIHADRTQQQ--RDNVVSSFRS 462
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
GKI VL+ + + RG+D +G+N V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 463 GKIWVLICTALLARGIDFKGINLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFTEDD 522
Query: 444 VCLVGCL-TPLLLCTSDILQRKTRLQKSKSRLRHK 477
L+ + T + + +K KS+L+H+
Sbjct: 523 KPLLRSIATVIKKAGCPVPDYMIGFKKIKSKLKHQ 557
Score = 136 (52.9 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
Identities = 34/115 (29%), Positives = 62/115 (53%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P V+ FE+ ++ LDPR+ ++ G + P+Q+ + + + +R++ +P
Sbjct: 159 PDPVTTFEELQKEY--DLDPRIIHNIKAAGFQTPTPIQM----QAVPLMMHKREILACAP 212
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSV 132
TGSGKT+++ LP++ L + RAL++ PTR+LA Q ++ VG V
Sbjct: 213 TGSGKTMAFCLPLLAHLRQPLNKGFRALIISPTRELATQTHRELLKLSEGVGFRV 267
Score = 82 (33.9 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ +N L + +LVVDE+D+L + ++ L T+ S N
Sbjct: 289 DILVTTPNRLIYLLNQDPPAINLSSVEWLVVDESDKLFEDGKTGFREQLATIFLACSSPN 348
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 349 VRRVLFSATF 358
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 169 (64.5 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 42/135 (31%), Positives = 65/135 (48%)
Query: 305 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIK 363
E L+ L+C + + L+ L+ EE +T + C LL+ + I
Sbjct: 220 ETLDQRYLLCADYDRDMVLIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNV 279
Query: 364 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423
G RQ R L F+ +I+ L+++D RG+D+ V V+N+ P K YIHR
Sbjct: 280 CLHGFMRQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRV 339
Query: 424 GRTARAGQLGRCFTL 438
GRTARAG+ G ++
Sbjct: 340 GRTARAGRKGMSISI 354
Score = 151 (58.2 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 42/121 (34%), Positives = 64/121 (52%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP-TGSGKTLSYALPIVQT 93
L P L L +G+ P+Q Q+ I P + CI + TGSGKT ++ALPI++
Sbjct: 14 LRPWLVKQLTKLGLKGATPIQ----QKCI-PAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
LS V ALV+ PT +LA Q+ + F A+G+ V + G + E +L++RP
Sbjct: 69 LSEEPVSHF-ALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPH 127
Query: 154 L 154
+
Sbjct: 128 I 128
Score = 116 (45.9 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
Q+L I+VA PGRL DH+ F+ ++L YLVVDE DR+L + L + +
Sbjct: 120 QKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLP 179
Query: 227 SDNENRFSDAS 237
+N F A+
Sbjct: 180 KTRQNLFFSAT 190
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 237 (88.5 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 57/172 (33%), Positives = 95/172 (55%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KPLYLVALL 327
M+ SAT+T++ +L +L L+ PL L+ + + P E I ++ + L++L
Sbjct: 348 MLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLC 407
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ K I+F+ + ++ HRL L FG +K E G Q+ R +L+ FR+ ++
Sbjct: 408 TRTFKSKVIIFSGTKQAAHRLKIL---FGLAGLKAAELHGNLTQAQRLDSLELFRKQEVD 464
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
L+++D RG+D+ GV V+NY P I +Y+HR GRTARAG+ G T +
Sbjct: 465 FLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFV 516
Score = 158 (60.7 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 53/176 (30%), Positives = 87/176 (49%)
Query: 3 EAKKKSMPVLPWMRSPVD-VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
E K + P+ S VD VS D ++ L P L+ A + +G P+Q A
Sbjct: 144 EYKPEDATPKPFF-STVDGVSFHADTFME-LNLSRPLLR-ACETLGYKKPTPIQAAC--- 197
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL--RALVVLPTRDLALQVKD 119
I L RDLC ++ TGSGKT ++ALP ++ L R R R L++ PTR+LA+Q+
Sbjct: 198 -IPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHS 256
Query: 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
+ +A + GL VG S+ ++ L P + + P ++ L++++ +
Sbjct: 257 MIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDI---VVATPGRMIDHLRNSMSV 309
Score = 135 (52.6 bits), Expect = 6.2e-26, Sum P(3) = 6.2e-26
Identities = 39/124 (31%), Positives = 67/124 (54%)
Query: 104 ALVVLPTRD-LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL--IKRPKLEAGICY 160
A LPT + L + K VFA + + LAV S+ +++ IK + G+
Sbjct: 219 AAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSV 278
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 220
++V+ L+S DI+VATPGR++DH+ + L+ L L++DE DRLL+ + +
Sbjct: 279 REQEVV--LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITE 336
Query: 221 VLQL 224
+++L
Sbjct: 337 LVRL 340
Score = 40 (19.1 bits), Expect = 6.2e-26, Sum P(3) = 6.2e-26
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQN 45
E+ K+ + PW + S+ E+ H +D ++ A+Q+
Sbjct: 61 EKRKRDADAQSPWDFASYSSSVGEEHARRHTTSIDEKISKAIQH 104
>UNIPROTKB|F1P8J6 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969
EMBL:AAEX03014637 RefSeq:XP_543371.2 Ensembl:ENSCAFT00000011945
GeneID:486246 KEGG:cfa:486246 Uniprot:F1P8J6
Length = 599
Score = 208 (78.3 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
Identities = 66/213 (30%), Positives = 102/213 (47%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L++ +EK ++F S+ L + +KI G + R+K FR+
Sbjct: 260 HFLRNHKQEKHLIFFSTCACVEYYGKALEALVK-SVKIMCIHGKMKHK-RNKIFMEFRKL 317
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 QSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLPMEE 377
Query: 445 CLVGCLTPLLLCTSDILQRKTRLQKSKSRLRHK 477
V L C LQ + +LQK+ L K
Sbjct: 378 SYVTFLEINQKCP---LQ-EMKLQKNTGDLLPK 406
Score = 184 (69.8 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
Identities = 71/221 (32%), Positives = 109/221 (49%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ AL +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPTQLHPQVLGALGQLGFPHMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIAD 143
PI++ L R + + A+++ PTR+LA+QV +V A + S L +G + AD
Sbjct: 66 PILEILLRREEKLKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPAD 125
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHL 198
++S R K + G +I+VATPGRL D G L + L
Sbjct: 126 DVS----RFKEQGG----------------NIIVATPGRLEDMFRRKVEGLDLASCVKSL 165
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL ++A + T+L+ L + FS T
Sbjct: 166 EVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 206
Score = 37 (18.1 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411
++ LK F++GKI + + +G+ G V D
Sbjct: 557 TRLLKKFKKGKI----TEEEFEKGLFSSGKGTVTTAD 589
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 248 (92.4 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
Identities = 60/184 (32%), Positives = 97/184 (52%)
Query: 262 KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320
K PR + L SAT+T+ +KL + L P ++ +RYK + L+ + + +K K
Sbjct: 213 KVIPRERRTYLFSATMTKKVSKLERASLRDPARVSVS-SRYKTVDNLKQHYIFVPNKYKE 271
Query: 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
YLV LL IVF ++ +T ++ +L G + + G Q R +L
Sbjct: 272 TYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLH---GQMSQEKRLGSLNK 328
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440
F+ ++LV +D RG+D+ V+ V+NYD P+ K Y+HR GRTARAG+ G T++
Sbjct: 329 FKSKAREILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVT 388
Query: 441 KDEV 444
+ +V
Sbjct: 389 QYDV 392
Score = 134 (52.2 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
Identities = 31/97 (31%), Positives = 54/97 (55%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ Q + L +D+ + TGSGKT ++A+P++Q+L + + LV+ PTR+LA Q+
Sbjct: 70 IQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP-QAFFCLVLTPTRELAFQI 128
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
F A+ +GL + VG +A + L +RP +
Sbjct: 129 GQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHI 165
Score = 131 (51.2 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRF 233
I+VATPGRL+DH+ T+GF L+ L +L++DE DR+L ++ L +L+ + R F
Sbjct: 165 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLF 224
Query: 234 SDASTFLPSAF--GSLKTIRRCGVERGFK 260
S T S SL+ R V +K
Sbjct: 225 SATMTKKVSKLERASLRDPARVSVSSRYK 253
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 212 (79.7 bits), Expect = 4.3e-28, Sum P(3) = 4.3e-28
Identities = 61/199 (30%), Positives = 98/199 (49%)
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 325
++ + + SAT D + +L+L + + ++ G R E +E L S+ L +
Sbjct: 254 KVKRAMFSATFAYDVEQWCKLNLDNVITVSIG-ARNSAVETVEQELLFVGSETGKLLAMR 312
Query: 326 LLQSLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L G +VF S+E L L + G + + + Q+Q R T+ +FR G
Sbjct: 313 ELVKKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHADRTQQQ--RDNTVHSFRAG 369
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
KI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 370 KIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDD- 428
Query: 445 CLVGCLTPLLLCTSDILQR 463
PLL ++++Q+
Sbjct: 429 ------KPLLRSVANVIQQ 441
Score = 145 (56.1 bits), Expect = 4.3e-28, Sum P(3) = 4.3e-28
Identities = 36/118 (30%), Positives = 65/118 (55%)
Query: 28 PLDHLPCLDPRLKVA---LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K++ LQN+ + + F + + + I L R+L ++PTGSGKTL
Sbjct: 67 PITTFQQLDQEYKISSRLLQNI-LDAGFQLPTPIQMQAIPVMLHGRELLASAPTGSGKTL 125
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
++++PI+ L + RALV+ PTR+LA Q+ I+ G + + + ++++A
Sbjct: 126 AFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELVKISEGTGFRIHM-IHKAAVA 182
Score = 69 (29.3 bits), Expect = 4.3e-28, Sum P(3) = 4.3e-28
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 195 DILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 254
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 255 VKRAMFSATF 264
Score = 39 (18.8 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 138 QSSIADEISELIKRPKLEAGICYDPEDVLQE 168
Q ++ + +IK+P IC P+ L++
Sbjct: 454 QKLLSKQKKRMIKKPLERESICTTPKYFLEK 484
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 211 (79.3 bits), Expect = 4.3e-28, Sum P(3) = 4.3e-28
Identities = 58/177 (32%), Positives = 93/177 (52%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATL + + A+ L P+ + + KL E+L+ KP L+ LL+
Sbjct: 214 VLFSATLPKLLVEFARAGLTEPMLIRL-DVESKLSEQLKLAFFHVRGDDKPAVLLHLLRC 272
Query: 330 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ +++ +VF ++ T L LL G I YS L Q+ R + F GK Q
Sbjct: 273 VVKPQDQTVVFVATKHHTEYLKELLTSQGICCTHI--YSSLD-QTARKINIAKFAHGKCQ 329
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
VL+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DE+
Sbjct: 330 VLLVTDVAARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEM 386
Score = 130 (50.8 bits), Expect = 4.3e-28, Sum P(3) = 4.3e-28
Identities = 32/103 (31%), Positives = 52/103 (50%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111
+ V + ++TI L RD+ + TGSGKT + LP+ + L + RAL++ PTR
Sbjct: 56 YKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFERLKAPSPSGARALILSPTR 115
Query: 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+LALQ + GL L +G + D+ + L + P +
Sbjct: 116 ELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFAALHENPDI 158
Score = 96 (38.9 bits), Expect = 4.3e-28, Sum P(3) = 4.3e-28
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L +L
Sbjct: 146 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIL 204
Score = 38 (18.4 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 423 AGRTARAGQLGRCFTLLHKDEVCLV 447
AG G LGR L DE CL+
Sbjct: 410 AGAADADGVLGRVPQSLVDDEECLL 434
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 212 (79.7 bits), Expect = 4.3e-28, Sum P(3) = 4.3e-28
Identities = 61/196 (31%), Positives = 96/196 (48%)
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
+ + SAT D + +L+L + + ++ G R E +E L S+ L + L
Sbjct: 241 RAMFSATFAYDVEQWCKLNLDNVISVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELV 299
Query: 329 SLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
G +VF S+E L L + G + + + Q+Q R T+ +FR GKI
Sbjct: 300 KKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHAERTQQQ--RDNTVHSFRAGKIW 356
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV 447
VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 357 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDD---- 412
Query: 448 GCLTPLLLCTSDILQR 463
PLL ++++Q+
Sbjct: 413 ---KPLLRSVANVIQQ 425
Score = 144 (55.7 bits), Expect = 4.3e-28, Sum P(3) = 4.3e-28
Identities = 36/118 (30%), Positives = 65/118 (55%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F + + + I L R+L ++PTGSGKTL
Sbjct: 51 PIATFQQLDQEYKINSRLLQNI-LDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTL 109
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
++++PI+ L A + RAL++ PTR+LA Q+ I+ G + + + ++++A
Sbjct: 110 AFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHM-IHKAAVA 166
Score = 69 (29.3 bits), Expect = 4.3e-28, Sum P(3) = 4.3e-28
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 179 DILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 238
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 239 VRRAMFSATF 248
>UNIPROTKB|F1RFL5 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969 OMA:CACVEYW
EMBL:CU468658 RefSeq:XP_001927747.2 UniGene:Ssc.4554
UniGene:Ssc.95961 Ensembl:ENSSSCT00000010713 GeneID:100157342
KEGG:ssc:100157342 Uniprot:F1RFL5
Length = 600
Score = 211 (79.3 bits), Expect = 4.7e-28, Sum P(2) = 4.7e-28
Identities = 69/218 (31%), Positives = 106/218 (48%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGAAASSTQKTPSRLENYYMVCKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-----LR-IKIKEYSGLQRQSVRSKTL 378
L++ +EK +VF S+ C + ++G+ +R +KI G + R+K
Sbjct: 260 HFLRNHKQEKHLVFFST-------CACVEYYGKALEALVRSVKIMCIHGKMKYK-RNKIF 311
Query: 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
FR+ + +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G
Sbjct: 312 MEFRQLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVF 371
Query: 439 LHKDEVCLVGCLTPLLLCTSDI--LQRKT--RLQKSKS 472
L E V L C LQ+ T L K KS
Sbjct: 372 LLPMEESYVNFLAINQKCPLQAMKLQKNTVDLLPKLKS 409
Score = 179 (68.1 bits), Expect = 4.7e-28, Sum P(2) = 4.7e-28
Identities = 70/221 (31%), Positives = 107/221 (48%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L PR+ LQ +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPVPLHPRVLDVLQELGFPYMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIA-PAVGLSVGLAVGQSSIAD 143
PI++ L R + + A+++ PTR+LA+Q+ +V + P S L +G
Sbjct: 66 PILEILLRREEKLKKSQVGAIIITPTRELAVQIDEVLSHFTKPFPQFSQILWIGG----- 120
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHL 198
+ P G EDV + + +I+VATPGRL D G L + L
Sbjct: 121 ------RNP----G-----EDVARFKEHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSL 165
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL ++A + T+L+ L + FS T
Sbjct: 166 DVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 206
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 211 (79.3 bits), Expect = 7.5e-28, Sum P(2) = 7.5e-28
Identities = 65/209 (31%), Positives = 101/209 (48%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL------RIKIKEYSGLQRQSVRSKTL 378
L+S +EK +VF S+ C + ++G+ ++KI G + R+K
Sbjct: 260 HFLRSRQQEKHLVFFST-------CACVEYYGKALEALLKKVKILCIHGKMKYK-RNKIF 311
Query: 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
FR+ + +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G
Sbjct: 312 MEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVF 371
Query: 439 LHKDEVCLVGCLTPLLLCTSD--ILQRKT 465
L E + L C LQR T
Sbjct: 372 LLPMEEAYINFLAINQKCPLQEMSLQRNT 400
Score = 177 (67.4 bits), Expect = 7.5e-28, Sum P(2) = 7.5e-28
Identities = 66/214 (30%), Positives = 103/214 (48%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L PR+ AL+ +G + PVQ A TI + +D+ + TGSGKTL++ +PI++ L
Sbjct: 16 LHPRVLGALRELGFPHMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVIPILEIL 71
Query: 95 SNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
R + + A+V+ PTR+LA+Q+ +V + + S+++
Sbjct: 72 LRREEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHF--------------PQFSQILW 117
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDE 205
G EDV + Q +I+VATPGRL D G L + L LV+DE
Sbjct: 118 IGGRNPG-----EDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDE 172
Query: 206 TDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
DRLL ++A + T+L+ L + FS T
Sbjct: 173 ADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 206
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 181 (68.8 bits), Expect = 7.6e-28, Sum P(3) = 7.6e-28
Identities = 43/119 (36%), Positives = 71/119 (59%)
Query: 325 ALLQS-LGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
ALLQ L EK I+FT++ T RL LL E + SG Q R++ +++
Sbjct: 235 ALLQHFLVTEKSQQIIIFTATRSDTDRLAKLLT---EQNLNAVALSGELNQGQRNQIMES 291
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
F +G+ ++LV++D +RG+D+ V++V+N+D P + + ++HR GRT RAG G +L+
Sbjct: 292 FSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLV 350
Score = 147 (56.8 bits), Expect = 7.6e-28, Sum P(3) = 7.6e-28
Identities = 41/122 (33%), Positives = 63/122 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L +++MG + P Q+ Q+ I + DL +S TGSGKTL++ +P +Q L
Sbjct: 8 LDSALMSTIEHMGFNE--PTQIQ--QQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRL 63
Query: 95 S-NRAV--RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
S NRA+ R R +++ PTR+LA QV L +G + D++ L K
Sbjct: 64 SKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKE 123
Query: 152 PK 153
P+
Sbjct: 124 PE 125
Score = 97 (39.2 bits), Expect = 7.6e-28, Sum P(3) = 7.6e-28
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 210
D ++ LQ + +VATPGRL DH+ T+G F L L L++DE DR+L
Sbjct: 115 DQVKVLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADRML 160
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 181 (68.8 bits), Expect = 7.6e-28, Sum P(3) = 7.6e-28
Identities = 43/119 (36%), Positives = 71/119 (59%)
Query: 325 ALLQS-LGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
ALLQ L EK I+FT++ T RL LL E + SG Q R++ +++
Sbjct: 235 ALLQHFLVTEKSQQIIIFTATRSDTDRLAKLLT---EQNLNAVALSGELNQGQRNQIMES 291
Query: 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
F +G+ ++LV++D +RG+D+ V++V+N+D P + + ++HR GRT RAG G +L+
Sbjct: 292 FSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLV 350
Score = 147 (56.8 bits), Expect = 7.6e-28, Sum P(3) = 7.6e-28
Identities = 41/122 (33%), Positives = 63/122 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L +++MG + P Q+ Q+ I + DL +S TGSGKTL++ +P +Q L
Sbjct: 8 LDSALMSTIEHMGFNE--PTQIQ--QQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRL 63
Query: 95 S-NRAV--RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
S NRA+ R R +++ PTR+LA QV L +G + D++ L K
Sbjct: 64 SKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKE 123
Query: 152 PK 153
P+
Sbjct: 124 PE 125
Score = 97 (39.2 bits), Expect = 7.6e-28, Sum P(3) = 7.6e-28
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLL 210
D ++ LQ + +VATPGRL DH+ T+G F L L L++DE DR+L
Sbjct: 115 DQVKVLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADRML 160
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 196 (74.1 bits), Expect = 9.9e-28, Sum P(3) = 9.9e-28
Identities = 70/243 (28%), Positives = 112/243 (46%)
Query: 250 IRRCGVERGFKD--KPYP-RLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLP- 304
I G E K K P R M+ SAT T+ LA++ L PL++ + +
Sbjct: 325 ILEVGFEEEMKQIIKLLPKRRQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNKETATV 384
Query: 305 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 364
+ LE ++C S+ + L L L+ ++K +VF SS S LLN+ + + +
Sbjct: 385 DGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNY---IDLPVLA 441
Query: 365 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--AYIKTYIHR 422
G Q+Q+ R+ T F + +L+ +D RG+D+ V+ +V YD P K YIHR
Sbjct: 442 IHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPEVDWIVQYDPPDDPKQKEYIHR 501
Query: 423 AGRTARA-GQLGRCFTLLHKDEVCLVGCLTPLLLCTSDI---LQRKTRLQKSKSRLRHKN 478
GRTAR G +L +E+ + L + S+ + + +Q +L KN
Sbjct: 502 VGRTARGINGRGHALLILRPEELGFLRYLKQARVPLSEFEFSWSKISDIQSQLEKLIEKN 561
Query: 479 YAL 481
Y L
Sbjct: 562 YFL 564
Score = 131 (51.2 bits), Expect = 9.9e-28, Sum P(3) = 9.9e-28
Identities = 24/58 (41%), Positives = 41/58 (70%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
Q+L + ++I+VATPGRL+DH+ T GF ++L LV+DE DR+L ++ + +++L
Sbjct: 283 QKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKL 340
Score = 104 (41.7 bits), Expect = 9.9e-28, Sum P(3) = 9.9e-28
Identities = 33/106 (31%), Positives = 55/106 (51%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLR 103
GIS + F + ++I P L RD+ + TGSGKTL++ +P V+ + R
Sbjct: 180 GISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAVELIYKLKFMPRNGT 239
Query: 104 ALVVL-PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+++L PTR+LA+Q V + + GL +G S+ + E +L
Sbjct: 240 GVIILSPTRELAMQTYGVLKELMNHHVHTYGLIMGGSNRSAEAQKL 285
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 212 (79.7 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
Identities = 61/196 (31%), Positives = 96/196 (48%)
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
+ + SAT D + +L+L + + ++ G R E +E L S+ L + L
Sbjct: 349 RAMFSATFAYDVEQWCKLNLDNVISVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELV 407
Query: 329 SLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
G +VF S+E L L + G + + + Q+Q R T+ +FR GKI
Sbjct: 408 KKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHAERTQQQ--RDNTVHSFRAGKIW 464
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV 447
VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 465 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDD---- 520
Query: 448 GCLTPLLLCTSDILQR 463
PLL ++++Q+
Sbjct: 521 ---KPLLRSVANVIQQ 533
Score = 144 (55.7 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
Identities = 36/118 (30%), Positives = 65/118 (55%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F + + + I L R+L ++PTGSGKTL
Sbjct: 159 PIATFQQLDQEYKINSRLLQNI-LDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTL 217
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
++++PI+ L A + RAL++ PTR+LA Q+ I+ G + + + ++++A
Sbjct: 218 AFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHM-IHKAAVA 274
Score = 69 (29.3 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 287 DILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 346
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 347 VRRAMFSATF 356
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 200 (75.5 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 56/184 (30%), Positives = 96/184 (52%)
Query: 270 MVLSATLTQDPNKLA---QLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVA 325
++ +AT+T +L Q + PL+L ET +P L+ + S+++ YLV
Sbjct: 190 LLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYLVH 249
Query: 326 LLQ--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
LL ++ I+F + + + ++L ELR+ +QR+ + S L FR
Sbjct: 250 LLTIPENAKKSAIIFVNRTRTAELIYSILRLL-ELRVTELHSEMVQRERINS--LGRFRA 306
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
++LV++D +RG+D+ V V+N+D P YIHR GRTARAG+ G +++ + +
Sbjct: 307 EAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERD 366
Query: 444 VCLV 447
V LV
Sbjct: 367 VDLV 370
Score = 140 (54.3 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 35/94 (37%), Positives = 55/94 (58%)
Query: 60 QETIGPGLFERDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118
QE + + E CI + TGSGKT ++ALPI++ S + + AL++ PTR+LA+Q+
Sbjct: 34 QEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWS-KDPSGIFALILTPTRELAIQID 92
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ FAA+ + L L VG + + +L KRP
Sbjct: 93 EQFAALGANLNLKHALIVGGMDMIRQSIDLSKRP 126
Score = 79 (32.9 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFT---LEHLCYLVVDETDRLLREAY 214
+L ++VATPGRL D I + T L + +LV+DE DRLL +
Sbjct: 121 DLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTF 170
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 215 (80.7 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 65/203 (32%), Positives = 97/203 (47%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L+S +EK +VF S+ L + R+KI G + R+K FR+
Sbjct: 260 HFLRSRQQEKHLVFFSTCACVEYYGKALEALVQ-RVKILCIHGKMKYK-RNKIFMEFRKL 317
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 QSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEE 377
Query: 445 CLVGCLTPLLLCTSD--ILQRKT 465
+ L C LQR T
Sbjct: 378 AYINFLAINQKCPLQEMSLQRNT 400
Score = 169 (64.5 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 65/214 (30%), Positives = 102/214 (47%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + AL+ +G + PVQ A TI + +D+ + TGSGKTL++ +PI++ L
Sbjct: 16 LHPLVLGALRELGFLHMTPVQSA----TIPLFMRNKDVAAEAVTGSGKTLAFVIPILEIL 71
Query: 95 SNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150
R + + A+V+ PTR+LA+Q+ +V + + S+++
Sbjct: 72 LRREEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHF--------------PQFSQILW 117
Query: 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLCYLVVDE 205
G EDV + Q +I+VATPGRL D G L + L LV+DE
Sbjct: 118 IGGRNPG-----EDVERFKQHGGNIIVATPGRLEDMFRRKAEGLDLASYVKSLDVLVLDE 172
Query: 206 TDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
DRLL ++A + T+L+ L + FS T
Sbjct: 173 ADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 206
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 192 (72.6 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 53/184 (28%), Positives = 86/184 (46%)
Query: 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK 319
K+ P R + SAT+ + LA L +P ++ R+E E K
Sbjct: 180 KNVPSKRQT-LFFSATMPKAVESLAATFLRNPAEVSVAPPA-TTAGRIEQRVCFVEQPEK 237
Query: 320 PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLK 379
L+ ++ IVFT + H ++ + I G + QS R K L+
Sbjct: 238 ASLLIEKIRDPELRSAIVFT---RTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALE 294
Query: 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
AF+ G++ +LV++D RG+ V+ + +V+NYD P + ++HR GRTARAG G +
Sbjct: 295 AFKAGRVPILVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFC 354
Query: 440 HKDE 443
+DE
Sbjct: 355 SRDE 358
Score = 134 (52.2 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 39/118 (33%), Positives = 61/118 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L R+ +L G ++ P+Q ++ I + RD+ + TG+GKTL++A PI+ L
Sbjct: 14 LTGRILTSLTKAGYTAPTPIQ----EQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRL 69
Query: 95 SNRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
S A VR R LV+ PTR+LA Q+ F + L V + G + I +I +L
Sbjct: 70 SRNASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQL 127
Score = 94 (38.1 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+++L+ ILVATPGRL+D + R +L+ + L++DE D++L + L + +
Sbjct: 124 IRQLERGAHILVATPGRLID-LMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNV 182
Query: 226 RSDNENRFSDASTFLPSAFGSL 247
S + F A+ +P A SL
Sbjct: 183 PSKRQTLFFSAT--MPKAVESL 202
>UNIPROTKB|Q8NHQ9 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
OMA:CACVEYW EMBL:AC055713 EMBL:AC117503 EMBL:BC030020 EMBL:AL833756
EMBL:AB046815 IPI:IPI00185361 RefSeq:NP_065987.1 UniGene:Hs.286173
ProteinModelPortal:Q8NHQ9 SMR:Q8NHQ9 STRING:Q8NHQ9
PhosphoSite:Q8NHQ9 DMDM:296439376 PaxDb:Q8NHQ9 PRIDE:Q8NHQ9
Ensembl:ENST00000238146 GeneID:57696 KEGG:hsa:57696 UCSC:uc001ufi.3
GeneCards:GC12P124086 HGNC:HGNC:20085 neXtProt:NX_Q8NHQ9
PharmGKB:PA134984021 InParanoid:Q8NHQ9 ChiTaRS:DDX55
GenomeRNAi:57696 NextBio:64547 ArrayExpress:Q8NHQ9 Bgee:Q8NHQ9
CleanEx:HS_DDX55 Genevestigator:Q8NHQ9 GermOnline:ENSG00000111364
Uniprot:Q8NHQ9
Length = 600
Score = 208 (78.3 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 66/217 (30%), Positives = 106/217 (48%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGL----QRQSVRSKTLK 379
L++ +EK +VF S+ C + ++G+ L + +K + + + R+K
Sbjct: 260 HFLRNHKQEKHLVFFST-------CACVEYYGKALEVLVKGVKIMCIHGKMKYKRNKIFM 312
Query: 380 AFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
FR+ + +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L
Sbjct: 313 EFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFL 372
Query: 440 HKDEVCLVGCLTPLLLCTSDIL--QRKTR--LQKSKS 472
E + L C + QR T L K KS
Sbjct: 373 LPMEESYINFLAINQKCPLQEMKPQRNTADLLPKLKS 409
Score = 176 (67.0 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 67/220 (30%), Positives = 105/220 (47%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ AL+ +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPVPLHPQVLGALRELGFPYMTPVQSA----TIPLFMRNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
PI++ L R + + A+++ PTR+LA+Q+ +V + E
Sbjct: 66 PILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHF--------------PE 111
Query: 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHLC 199
S+++ G EDV + Q +I+VATPGRL D G L L
Sbjct: 112 FSQILWIGGRNPG-----EDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLD 166
Query: 200 YLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL ++A + T+L+ L + FS T
Sbjct: 167 VLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 206
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 214 (80.4 bits), Expect = 2.2e-27, Sum P(3) = 2.2e-27
Identities = 54/176 (30%), Positives = 92/176 (52%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT ++LAQ L P+ + G ++ ++ + K ++ LQS
Sbjct: 424 VMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQS 483
Query: 330 LGE-EKCIVFTS-SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ +K IVF S + H L+ G I ++ G + Q R K L+ F+ GK++
Sbjct: 484 MSSTDKVIVFVSRKAVADHLSSDLI--LGN--ISVESLHGDREQRDREKALENFKTGKVR 539
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
+L+++D +RG+DV V +V N+D P I+ Y+HR GRT RAG+ G T L +++
Sbjct: 540 ILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRND 595
Score = 120 (47.3 bits), Expect = 2.2e-27, Sum P(3) = 2.2e-27
Identities = 24/75 (32%), Positives = 46/75 (61%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
++ ++EL+ VDI++ATPGRL D + + L+++ YLV+DE D++L ++ + +L
Sbjct: 356 DEQIEELKKGVDIIIATPGRLND-LQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKIL 414
Query: 223 QLTRSDNENRFSDAS 237
R D + + A+
Sbjct: 415 LDVRPDRQTVMTSAT 429
Score = 91 (37.1 bits), Expect = 2.2e-27, Sum P(3) = 2.2e-27
Identities = 36/126 (28%), Positives = 57/126 (45%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
D C P + ++ G P+Q W + G+ DL + TG+GKTL Y +P
Sbjct: 245 DAFQCY-PEVMENIKKAGFQKPTPIQSQAWPIVL-QGI---DLIGVAQTGTGKTLCYLMP 299
Query: 90 -IVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
+ + +++ R LV+ PTR+LALQV+ + GL G + ++
Sbjct: 300 GFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQ 358
Query: 145 ISELIK 150
I EL K
Sbjct: 359 IEELKK 364
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 195 (73.7 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 56/196 (28%), Positives = 93/196 (47%)
Query: 245 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKL 303
G K +RR + K + R ++ SATL D N +A L+ P + G +
Sbjct: 167 GFAKELRR--IHNAAKHR---RRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEH 221
Query: 304 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 363
+ + + L K L +L + I+FT++ T RL LN + +K
Sbjct: 222 KDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLN---QNNLKAV 278
Query: 364 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423
SG Q+ R+ + F ++LV++D +RG+D+ V +V+N+D P + + Y+HR
Sbjct: 279 ALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRV 338
Query: 424 GRTARAGQLGRCFTLL 439
GRT RAG G +L+
Sbjct: 339 GRTGRAGNKGDAMSLV 354
Score = 133 (51.9 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 38/122 (31%), Positives = 65/122 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QT 93
LD RL L+N+ + F + Q+ I + RDL +S TGSGKTL++ LP++ ++
Sbjct: 12 LDNRL---LKNLAHYN-FKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKS 67
Query: 94 LSNRAVRCL--RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L +A R L+++PTR+LA QV ++ + + L G + D++ L +
Sbjct: 68 LKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARG 127
Query: 152 PK 153
P+
Sbjct: 128 PR 129
Score = 90 (36.7 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
D ++ L +VATPGRL DH++ R LE L LV+DE DR+L
Sbjct: 119 DQVKALARGPRFIVATPGRLADHLDH-RSLFLEGLETLVLDEADRML 164
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 195 (73.7 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 56/196 (28%), Positives = 93/196 (47%)
Query: 245 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKL 303
G K +RR + K + R ++ SATL D N +A L+ P + G +
Sbjct: 167 GFAKELRR--IHNAAKHR---RRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEH 221
Query: 304 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK 363
+ + + L K L +L + I+FT++ T RL LN + +K
Sbjct: 222 KDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLN---QNNLKAV 278
Query: 364 EYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423
SG Q+ R+ + F ++LV++D +RG+D+ V +V+N+D P + + Y+HR
Sbjct: 279 ALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRV 338
Query: 424 GRTARAGQLGRCFTLL 439
GRT RAG G +L+
Sbjct: 339 GRTGRAGNKGDAMSLV 354
Score = 133 (51.9 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 38/122 (31%), Positives = 65/122 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QT 93
LD RL L+N+ + F + Q+ I + RDL +S TGSGKTL++ LP++ ++
Sbjct: 12 LDNRL---LKNLAHYN-FKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKS 67
Query: 94 LSNRAVRCL--RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
L +A R L+++PTR+LA QV ++ + + L G + D++ L +
Sbjct: 68 LKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARG 127
Query: 152 PK 153
P+
Sbjct: 128 PR 129
Score = 90 (36.7 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
D ++ L +VATPGRL DH++ R LE L LV+DE DR+L
Sbjct: 119 DQVKALARGPRFIVATPGRLADHLDH-RSLFLEGLETLVLDEADRML 164
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 206 (77.6 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 53/200 (26%), Positives = 97/200 (48%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
++ K P R ++ SATL ++ L P + + + +E
Sbjct: 170 IQAVLKQVPAQRQT-LLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQ-IEQRVYAI 227
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+S K ++ L++S ++ ++F+ + + +L LN G + + + G Q R
Sbjct: 228 DSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLG---VATQSFHGDLSQGAR 284
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
K L+ F++G +QVLV++D RG+D+ + V+N++ P + YIHR GRT RAG G
Sbjct: 285 EKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGL 344
Query: 435 CFTLLHKDEVCLVGCLTPLL 454
TL +++ L+ + LL
Sbjct: 345 AITLFSQEDALLLEEVETLL 364
Score = 170 (64.9 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 51/147 (34%), Positives = 80/147 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+ +L L +G P+QV E I L ++D+ + TG+GKT ++ALPI+Q L
Sbjct: 8 LNTQLVDTLAELGYQQPTPIQV----EAIPAILTKQDVMAGAQTGTGKTAAFALPILQLL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
S+ A + +RALV++PTR+LALQV+ F A + VG+A G SI E + +
Sbjct: 64 MADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSI--EAQQAV 121
Query: 150 KRPKLEAGICYDPEDVLQEL-QSAVDI 175
++ I P +L L Q A+++
Sbjct: 122 FNAGIDVLIA-TPGRLLDHLRQGALNL 147
Score = 132 (51.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 57/195 (29%), Positives = 85/195 (43%)
Query: 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
E I L ++D+ + TG+GKT ++ALPI+Q L A + R L L
Sbjct: 30 EAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAI---RALVL----- 81
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV-LQE--LQSAVDILV 177
P L+ L V QS + + K + GI Y + Q+ + +D+L+
Sbjct: 82 ----VPTRELA--LQVQQSFV-----KYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLI 130
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ L L LV DE DR+L + + VL+ + + A
Sbjct: 131 ATPGRLLDHLRQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSA- 188
Query: 238 TFLPSAFGSLKTIRR 252
T S F K + R
Sbjct: 189 TLDDSIFSFSKNLLR 203
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 206 (77.6 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 53/200 (26%), Positives = 97/200 (48%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
++ K P R ++ SATL ++ L P + + + +E
Sbjct: 170 IQAVLKQVPAQRQT-LLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQ-IEQRVYAI 227
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+S K ++ L++S ++ ++F+ + + +L LN G + + + G Q R
Sbjct: 228 DSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLG---VATQSFHGDLSQGAR 284
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
K L+ F++G +QVLV++D RG+D+ + V+N++ P + YIHR GRT RAG G
Sbjct: 285 EKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGL 344
Query: 435 CFTLLHKDEVCLVGCLTPLL 454
TL +++ L+ + LL
Sbjct: 345 AITLFSQEDALLLEEVETLL 364
Score = 170 (64.9 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 51/147 (34%), Positives = 80/147 (54%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+ +L L +G P+QV E I L ++D+ + TG+GKT ++ALPI+Q L
Sbjct: 8 LNTQLVDTLAELGYQQPTPIQV----EAIPAILTKQDVMAGAQTGTGKTAAFALPILQLL 63
Query: 95 -----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
S+ A + +RALV++PTR+LALQV+ F A + VG+A G SI E + +
Sbjct: 64 MADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSI--EAQQAV 121
Query: 150 KRPKLEAGICYDPEDVLQEL-QSAVDI 175
++ I P +L L Q A+++
Sbjct: 122 FNAGIDVLIA-TPGRLLDHLRQGALNL 147
Score = 132 (51.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 57/195 (29%), Positives = 85/195 (43%)
Query: 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120
E I L ++D+ + TG+GKT ++ALPI+Q L A + R L L
Sbjct: 30 EAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAI---RALVL----- 81
Query: 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV-LQE--LQSAVDILV 177
P L+ L V QS + + K + GI Y + Q+ + +D+L+
Sbjct: 82 ----VPTRELA--LQVQQSFV-----KYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLI 130
Query: 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
ATPGRL+DH+ L L LV DE DR+L + + VL+ + + A
Sbjct: 131 ATPGRLLDHLRQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSA- 188
Query: 238 TFLPSAFGSLKTIRR 252
T S F K + R
Sbjct: 189 TLDDSIFSFSKNLLR 203
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 210 (79.0 bits), Expect = 4.4e-27, Sum P(3) = 4.4e-27
Identities = 52/195 (26%), Positives = 104/195 (53%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT + + +LA+ ++HP+ ++ R ++ + + K L+ L++
Sbjct: 182 LMFSATFSDEIRELAKGLVNHPVEISV-TPRNAAATTVKQWICPVDKTQKSALLIQLIKQ 240
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
++ +VF+ + +RL L + I G + Q R+K L F+ G+++VL
Sbjct: 241 ENWQQVLVFSRTKHGANRLAKSLI---QAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGC 449
V++D RG+D++ + VVN+D P + Y+HR GRT RAG G+ +L+ +E+ L+
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKD 357
Query: 450 LTPLLLCTSDILQRK 464
+ L+ + +L+R+
Sbjct: 358 IERLI---NRVLERQ 369
Score = 105 (42.0 bits), Expect = 4.4e-27, Sum P(3) = 4.4e-27
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHI--NATRGFTLEHLCYLVVDETDRLLREAY 214
G+ +P+ + +L+ VD+LVATPGRL+D + NA + LE LV+DE DR+L +
Sbjct: 110 GVPINPQ--INKLRHGVDVLVATPGRLLDLVQQNAVKFNQLE---ILVLDEADRMLDMGF 164
Query: 215 QAWLPTVLQLTRSDNENRFSDASTF 239
+ +L L + +N A TF
Sbjct: 165 IRDIKKILALLPAKRQNLMFSA-TF 188
Score = 103 (41.3 bits), Expect = 4.4e-27, Sum P(3) = 4.4e-27
Identities = 34/117 (29%), Positives = 58/117 (49%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L+ A+ G + P+Q + I L +D+ + TG+GKT + LP+++ L
Sbjct: 8 LSAPLQKAVSEQGYDTPSPIQA----QAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELL 63
Query: 95 S--NRAVRC-LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ ++A RALV+ PTR+LA QV + + L + G I +I++L
Sbjct: 64 AKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKL 120
Score = 41 (19.5 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 361 KIKEYSGLQRQSVRSKTLKAFREGKIQ 387
K K +SG Q++S ++ K+ +G+ Q
Sbjct: 475 KAKPHSGAQQRSHAERSEKSNNDGRRQ 501
>UNIPROTKB|E2RB54 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:ERESINT
EMBL:AAEX03006616 Ensembl:ENSCAFT00000028820 Uniprot:E2RB54
Length = 601
Score = 211 (79.3 bits), Expect = 6.6e-27, Sum P(3) = 6.6e-27
Identities = 61/196 (31%), Positives = 96/196 (48%)
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
+ + SAT D + +L+L + + ++ G R E +E L S+ L + L
Sbjct: 351 RAMFSATFAYDVEQWCKLNLDNVITVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELV 409
Query: 329 SLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
G +VF S+E L L + G + + + Q+Q R T+ +FR GKI
Sbjct: 410 KKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHADRTQQQ--RDNTVHSFRAGKIW 466
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV 447
VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 467 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDD---- 522
Query: 448 GCLTPLLLCTSDILQR 463
PLL ++++Q+
Sbjct: 523 ---KPLLRSVANVIQQ 535
Score = 139 (54.0 bits), Expect = 6.6e-27, Sum P(3) = 6.6e-27
Identities = 35/118 (29%), Positives = 63/118 (53%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F + + I L R+L ++PTGSGKTL
Sbjct: 161 PIATFQQLDQEYKINSRLLQNI-LDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTL 219
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
++++PI+ L + RAL++ PTR+LA Q+ I+ G + + + ++++A
Sbjct: 220 AFSIPILMQLKQPTNKGFRALIISPTRELANQIHRELVKISEGTGFRIHM-IHKAAVA 276
Score = 69 (29.3 bits), Expect = 6.6e-27, Sum P(3) = 6.6e-27
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 289 DILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 348
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 349 VRRAMFSATF 358
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 224 (83.9 bits), Expect = 7.7e-27, Sum P(2) = 7.7e-27
Identities = 57/180 (31%), Positives = 93/180 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALLQ 328
++LSAT+T + N L ++ P F G+ +RLE ++C +K YLV +++
Sbjct: 270 LLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVKDAYLVYVVK 329
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ E+ T R C L + E L ++ Q R L AFR +Q
Sbjct: 330 NYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQ 389
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV 447
V++ +D +RG+D+ V+ VVN++ P KTYIHR GR+ARAG+ G + + + +V L+
Sbjct: 390 VIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELL 449
Score = 152 (58.6 bits), Expect = 7.7e-27, Sum P(2) = 7.7e-27
Identities = 41/111 (36%), Positives = 62/111 (55%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101
LQ M I + PVQ A P + E D+ + TG+GKTL++A+PI+Q LS
Sbjct: 104 LQTMQIKTATPVQAACI-----PKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYG- 157
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ AL++ PTR+LA Q+ + F A+ + L + VG S+ + EL +RP
Sbjct: 158 IYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSERP 208
Score = 84 (34.6 bits), Expect = 9.7e-20, Sum P(2) = 9.7e-20
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 141 IADEISELIKRPKLEAGICYDPEDVL---QELQSAVDILVATPGRLMDHINA---TRGFT 194
IA++ + L K L+ + ++ +EL ++VATPGRL D I + T
Sbjct: 173 IAEQFTALGKPITLKCSVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKV 232
Query: 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
+ + + V+DE DR+L Y L + +
Sbjct: 233 FKKIQFFVLDEADRMLEGQYNDQLKPIFE 261
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 202 (76.2 bits), Expect = 7.9e-27, Sum P(3) = 7.9e-27
Identities = 57/177 (32%), Positives = 92/177 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATL + + A+ L P+ + + KL E+L++ L+ K L+ LLQ+
Sbjct: 274 VLFSATLPKLLVEFARAGLTEPVLIRL-DVDSKLNEQLKTSFLLVREDTKAAVLLYLLQN 332
Query: 330 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ +++ +VF ++ L LL G I YS L Q+ R L F K
Sbjct: 333 VVRPQDQTVVFVATKHHAEYLTELLMGQGVSCAHI--YSALD-QTARKINLAKFTHNKCS 389
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
L+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DEV
Sbjct: 390 TLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 446
Score = 131 (51.2 bits), Expect = 7.9e-27, Sum P(3) = 7.9e-27
Identities = 32/104 (30%), Positives = 54/104 (51%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 110
+ V + ++TI L +D+ + TGSGKT + LP+ + L R+ + RAL++ PT
Sbjct: 115 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALILSPT 174
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R+LALQ + GL L +G + D+ + L + P +
Sbjct: 175 RELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDI 218
Score = 94 (38.1 bits), Expect = 7.9e-27, Sum P(3) = 7.9e-27
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 206 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 264
Score = 43 (20.2 bits), Expect = 6.9e-10, Sum P(3) = 6.9e-10
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKT 418
AM +D++G++ V N + Y+++
Sbjct: 499 AMGASLDLQGLHRVANNAQQQYVRS 523
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 211 (79.3 bits), Expect = 1.0e-26, Sum P(3) = 1.0e-26
Identities = 61/199 (30%), Positives = 97/199 (48%)
Query: 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA 325
++ + + SAT D + +L+L + ++ G R E +E L S+ L +
Sbjct: 344 KVKRAMFSATFAYDVEQWCRLNLDSVITVSVG-ARNSAVETVEQELLFVGSETGKLLAMR 402
Query: 326 LLQSLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L G +VF S+E L L + G + + + Q+Q R T+ +FR G
Sbjct: 403 ELVKKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHADRTQQQ--RDNTVHSFRAG 459
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
KI VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 460 KIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDD- 518
Query: 445 CLVGCLTPLLLCTSDILQR 463
PLL ++++Q+
Sbjct: 519 ------KPLLRSVANVIQQ 531
Score = 137 (53.3 bits), Expect = 1.0e-26, Sum P(3) = 1.0e-26
Identities = 34/118 (28%), Positives = 63/118 (53%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F + + I L R+L ++PTGSGKTL
Sbjct: 157 PIATFQQLDQEYKINSRLLQNI-LDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTL 215
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
++++PI+ L + RAL++ PTR+LA Q+ ++ G + + + ++++A
Sbjct: 216 AFSIPILMHLKQPTNKGFRALIISPTRELASQIHRELVKLSEGTGFRIHM-IHKAAVA 272
Score = 69 (29.3 bits), Expect = 1.0e-26, Sum P(3) = 1.0e-26
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSDN 229
DILV TP RL+ + G L + +LVVDE+D+L + ++ L ++ S
Sbjct: 285 DILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHK 344
Query: 230 ENRFSDASTF 239
R ++TF
Sbjct: 345 VKRAMFSATF 354
>SGD|S000002602 [details] [associations]
symbol:MSS116 "DEAD-box protein involved splicing of
mitochondrial introns" species:4932 "Saccharomyces cerevisiae"
[GO:0000373 "Group II intron splicing" evidence=IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=IEA;IMP] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0000372 "Group I intron
splicing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0034337 "RNA folding" evidence=IMP] [GO:0033592
"RNA strand annealing activity" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002602
GO:GO:0005524 GO:GO:0006417 GO:GO:0005759 GO:GO:0006397
EMBL:BK006938 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:Z48784 GO:GO:0000373 GO:GO:0000372
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00700000105515 GO:GO:0033592 OrthoDB:EOG437VPN
PIR:S02116 RefSeq:NP_010480.1 PDB:3I5X PDB:3I5Y PDB:3I61 PDB:3I62
PDB:3SQW PDB:3SQX PDB:4DB2 PDB:4DB4 PDBsum:3I5X PDBsum:3I5Y
PDBsum:3I61 PDBsum:3I62 PDBsum:3SQW PDBsum:3SQX PDBsum:4DB2
PDBsum:4DB4 ProteinModelPortal:P15424 SMR:P15424 DIP:DIP-5368N
IntAct:P15424 MINT:MINT-525340 STRING:P15424 PaxDb:P15424
PeptideAtlas:P15424 EnsemblFungi:YDR194C GeneID:851775
KEGG:sce:YDR194C CYGD:YDR194c HOGENOM:HOG000113654 OMA:PEAHENI
EvolutionaryTrace:P15424 NextBio:969573 Genevestigator:P15424
GermOnline:YDR194C GO:GO:0034337 Uniprot:P15424
Length = 664
Score = 205 (77.2 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 64/223 (28%), Positives = 107/223 (47%)
Query: 235 DASTFLPSAF-GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ--LDLHHP 291
+A L F L+TI G+ K + ++ SATL KLA ++
Sbjct: 268 EADRLLEIGFRDDLETIS--GILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKEC 325
Query: 292 LFL-TTGETRYKLPERLESYKLICESKLKPLYLVA--LLQSLGEE----KCIVFTSSVES 344
LFL T + + ER++ +I E ++ + + + E K I+F +V+
Sbjct: 326 LFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKF 385
Query: 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404
T LC++L + + + I E+ G Q+ R+ +K F++ + +LV +D RGMD V
Sbjct: 386 TSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV 445
Query: 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV 447
+ V+ P+ + YIHR GRTAR+G+ G + KDE+ V
Sbjct: 446 HEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFV 488
Score = 174 (66.3 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 63/214 (29%), Positives = 104/214 (48%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYALPIVQ 92
LD + A+ M L PVQ Q+TI P L + D+ + TG+GKT ++ +PI Q
Sbjct: 113 LDKEIHKAITRMEFPGLTPVQ----QKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQ 168
Query: 93 TLSNR---AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149
L N + ++A++V PTRDLALQ++ A + ++ GL + ++ L+
Sbjct: 169 HLINTKFDSQYMVKAVIVAPTRDLALQIE---AEVKKIHDMNYGLKK-YACVS-----LV 219
Query: 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
A + + + +L+ +I++ATPGRL+D + + Y V+DE DRL
Sbjct: 220 GGTDFRAAM-----NKMNKLRP--NIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 272
Query: 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA 243
L ++ L T+ + N + T L SA
Sbjct: 273 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSA 306
Score = 37 (18.1 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 376 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408
+T ++ +EG + + D + ++E N+V
Sbjct: 466 RTARSGKEGSSVLFICKDELPFVRELEDAKNIV 498
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 242 (90.2 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 56/171 (32%), Positives = 97/171 (56%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY-KLICESKLKPL-YLVALL 327
M+ SAT+T + L ++ L+ P+ L + + + + +L + K + YLV L
Sbjct: 436 MLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYLC 495
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
++L E+ I+F + H + FG L + E G Q R ++++AFR+GK+
Sbjct: 496 KNLYTERVIIFFRQKKIAHHARII---FGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVS 552
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
L+++D +RG+D++GV+ V+NY+ P ++ Y+HR GRTARAG+ G TL
Sbjct: 553 FLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITL 603
Score = 135 (52.6 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 44/145 (30%), Positives = 73/145 (50%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P L+ L ++G + P+Q +TI L +D+ + TGSGKT ++ +PI++ L
Sbjct: 265 PILR-GLTSVGFAKPTPIQ----SKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLY 319
Query: 97 RA--VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R V R +++ PTR+LA+Q V +A + LAVG S+ + SEL RP +
Sbjct: 320 RPKKVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDV 379
Query: 155 EAGICYDPEDVLQELQSAVDILVAT 179
I P + ++++ V T
Sbjct: 380 ---IIATPGRFIDHMRNSASFAVDT 401
Score = 111 (44.1 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTR 226
EL+ D+++ATPGR +DH+ + F ++ + LV+DE DR+L + + L +L L +
Sbjct: 372 ELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPK 431
Query: 227 SDNENRFSDAST 238
S FS T
Sbjct: 432 SRQTMLFSATMT 443
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 196 (74.1 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 48/187 (25%), Positives = 96/187 (51%)
Query: 265 PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323
P V+ +L SATL++ +LA+ + P ++ + + + + + K L
Sbjct: 176 PSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQAS-KSNISQWLITVDKDTKSALL 234
Query: 324 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L+ ++ ++F +E+ H L++ + I + + + Q++R++ L+ F+
Sbjct: 235 SHLINEQQWDQALIF---IETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKS 291
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
GKI+ LV++ RG+D++ ++ VVNYD P Y+HR GRT RA +G + + KD
Sbjct: 292 GKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDN 351
Query: 444 ---VCLV 447
+C++
Sbjct: 352 FKNLCMI 358
Score = 112 (44.5 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL---SNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
RDL + TG+GKT S+ LPI++ L + + +RAL+++PTR+LA+QV +
Sbjct: 39 RDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGK 98
Query: 127 AVGLSVGLAV 136
GL LAV
Sbjct: 99 DTGLK-SLAV 107
Score = 98 (39.6 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
D + Q L VD+LVATPGRLMD + R E + +V+DE DR+L
Sbjct: 112 DEQAQKQRLIDGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRML 160
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 196 (74.1 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 48/187 (25%), Positives = 96/187 (51%)
Query: 265 PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323
P V+ +L SATL++ +LA+ + P ++ + + + + + K L
Sbjct: 176 PSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQAS-KSNISQWLITVDKDTKSALL 234
Query: 324 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
L+ ++ ++F +E+ H L++ + I + + + Q++R++ L+ F+
Sbjct: 235 SHLINEQQWDQALIF---IETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKS 291
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
GKI+ LV++ RG+D++ ++ VVNYD P Y+HR GRT RA +G + + KD
Sbjct: 292 GKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDN 351
Query: 444 ---VCLV 447
+C++
Sbjct: 352 FKNLCMI 358
Score = 112 (44.5 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTL---SNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126
RDL + TG+GKT S+ LPI++ L + + +RAL+++PTR+LA+QV +
Sbjct: 39 RDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGK 98
Query: 127 AVGLSVGLAV 136
GL LAV
Sbjct: 99 DTGLK-SLAV 107
Score = 98 (39.6 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
D + Q L VD+LVATPGRLMD + R E + +V+DE DR+L
Sbjct: 112 DEQAQKQRLIDGVDVLVATPGRLMD-LYGQRAVYFEEIEMVVLDEADRML 160
>UNIPROTKB|E2RPT4 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
Length = 687
Score = 173 (66.0 bits), Expect = 1.9e-26, Sum P(3) = 1.9e-26
Identities = 50/170 (29%), Positives = 85/170 (50%)
Query: 270 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 325 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 384
Query: 328 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 385 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 440
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C
Sbjct: 441 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGIC 490
Score = 148 (57.2 bits), Expect = 1.9e-26, Sum P(3) = 1.9e-26
Identities = 42/123 (34%), Positives = 66/123 (53%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G+S LFP+QV +T GP +DL + TG+GKT S+A+P+
Sbjct: 143 NFPISEETIKL-LKGRGVSYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPL 197
Query: 91 VQTLSN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
++ L + R + LV+ PTR+LA QV F I LSV G +S +I
Sbjct: 198 IERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQI 255
Query: 146 SEL 148
+ +
Sbjct: 256 NHI 258
Score = 101 (40.6 bits), Expect = 1.9e-26, Sum P(3) = 1.9e-26
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 248 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 304
Query: 217 WLPTVLQLT-RSDNEN 231
+ ++ + ++D+E+
Sbjct: 305 QVEDIIHESYKTDSED 320
>UNIPROTKB|F1MW45 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 IPI:IPI00726158 UniGene:Bt.74315
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:DAAA02045235
Ensembl:ENSBTAT00000009556 Uniprot:F1MW45
Length = 601
Score = 206 (77.6 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 66/217 (30%), Positives = 105/217 (48%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMVCKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L++ +EK +VF S+ L + +KI G + R+K FR+
Sbjct: 260 HFLRNHKQEKHLVFFSTCACVEYYGKALETLVK-GVKIMCIHGKMKYK-RNKIFMEFRKL 317
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 QSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEE 377
Query: 445 CLVGCLTPLLLCTSDILQRKTRLQKSKSRLRHKNYAL 481
+ L C LQ + +LQK+ + L K A+
Sbjct: 378 SYISFLAINQKCP---LQ-EMKLQKNTADLLPKLKAM 410
Score = 169 (64.5 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 68/221 (30%), Positives = 106/221 (47%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ L+ +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPVPLHPQVLSVLRELGFPYMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIA-PAVGLSVGLAVGQSSIAD 143
PIV+ L R + + A+++ PTR+LA+Q+++V + P S L +G
Sbjct: 66 PIVEILLRREEKFKKSQVGAIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGG----- 120
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHL 198
+ P G EDV + + +I+VATPGRL D G L L
Sbjct: 121 ------RNP----G-----EDVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSL 165
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL ++ + T+L+ L + FS T
Sbjct: 166 EVLVLDEADRLLDMGFETSINTILEFLPKQRRTGLFSATQT 206
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 243 (90.6 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
Identities = 60/172 (34%), Positives = 98/172 (56%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--ESYKLICESKLKPL-YLVAL 326
M+ SAT+T +KL ++ L+ P+ L +T+ L E +L + K L YL+ L
Sbjct: 479 MLFSATMTDSVDKLIRVGLNRPVRLMV-DTKKNTAVTLVQEFVRLRPGREDKRLGYLLHL 537
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
+ + + IVF + HR+ + FG L +K E G Q R K++++FR+G +
Sbjct: 538 CKEVYTGRVIVFFRQKKEAHRVRIV---FGLLGLKAAELHGSMSQEQRIKSVESFRDGNV 594
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
L+++D +RG+D++GV V+NY+ P + Y+HR GRTARAG+ GR T+
Sbjct: 595 NFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTI 646
Score = 133 (51.9 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
Identities = 38/136 (27%), Positives = 72/136 (52%)
Query: 47 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--SNRAVRCLR 103
G++++ F + Q+TI L +D+ ++ TGSGKT ++ +PI++ L R V R
Sbjct: 312 GLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSR 371
Query: 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 163
+++PTR+LA+Q +V +A ++ VG S+ ++ + L KRP + I P
Sbjct: 372 VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRPDV---IIATPG 428
Query: 164 DVLQELQSAVDILVAT 179
+ ++++ V T
Sbjct: 429 RFIDHMRNSASFTVDT 444
Score = 114 (45.2 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRS 227
L+ D+++ATPGR +DH+ + FT++ L LV+DE DR+L + + L +L + +S
Sbjct: 416 LKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 475
Query: 228 DNENRFSDAST 238
FS T
Sbjct: 476 RQTMLFSATMT 486
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 220 (82.5 bits), Expect = 2.1e-26, Sum P(2) = 2.1e-26
Identities = 56/176 (31%), Positives = 95/176 (53%)
Query: 270 MVLSATLTQDPNKLAQLDLHHP--LFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT ++D LA LH+P + +T T ER+E + K L L+
Sbjct: 188 LLFSATFSKDITDLAGKLLHNPERIEVTPPNTTV---ERIEQRVFRLPASHKRALLAHLI 244
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ E+ +VFT + +RL L+ G + I G + Q+ R+K L F+ G+++
Sbjct: 245 TAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIH---GNKSQNARTKALADFKAGEVR 301
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
+LV++D RG+D++ + +VVN++ P + Y+HR GRT RAG+ G +L+ DE
Sbjct: 302 ILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Score = 154 (59.3 bits), Expect = 2.1e-26, Sum P(2) = 2.1e-26
Identities = 68/214 (31%), Positives = 95/214 (44%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L A++ G + PVQ Q I L RDL + + TG+GKT +ALPI++ L
Sbjct: 8 LSEALVGAIEAAGYTQPTPVQ----QRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERL 63
Query: 95 --------SNR-AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
S R R R LV+ PTR+LA QV D F A + G
Sbjct: 64 FPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFG-------- 115
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
G+ +P+ +Q + VD+LVA PGRL+D + L H+ LV+DE
Sbjct: 116 -----------GVGMNPQ--VQAMARGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDE 161
Query: 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
DR+L + + VL + +N A TF
Sbjct: 162 ADRMLDMGFVHDVKKVLARLPAKRQNLLFSA-TF 194
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 187 (70.9 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
Identities = 52/197 (26%), Positives = 94/197 (47%)
Query: 255 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y P ++LSAT+ QD ++ + P+ + + L
Sbjct: 174 LSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIK 233
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + + K L L +++ + ++F ++ ++ L E + G
Sbjct: 234 QFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNT---RRKVDWLTEQLTERDFTVSSMHG 290
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q+ R + FR G ++L+++D + RG+DV+ V+ V+NYD PA + YIHR GR
Sbjct: 291 DMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGG 350
Query: 428 RAGQLGRCFTLLHKDEV 444
R G+ G + D+V
Sbjct: 351 RFGRKGVSINFVTNDDV 367
Score = 138 (53.6 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
Identities = 34/114 (29%), Positives = 63/114 (55%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D LK L GI + F A+ Q I P L ERD+ + +G+GKT ++++ ++Q +
Sbjct: 23 DMNLKPELLR-GIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKI 81
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+C +AL++ PTR+LA Q++ V A+ + + +G + + D+++ L
Sbjct: 82 DTSLKQC-QALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAAL 134
Score = 81 (33.6 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
D + LQ+ V ++V TPGR+ D I R + + V+DE D +L ++ + + Q
Sbjct: 129 DDMAALQAGVHVVVGTPGRVHDMIQR-RALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQ 187
Query: 224 L 224
L
Sbjct: 188 L 188
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 173 (66.0 bits), Expect = 2.6e-26, Sum P(3) = 2.6e-26
Identities = 50/170 (29%), Positives = 85/170 (50%)
Query: 270 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 324 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 383
Query: 328 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 384 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 439
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C
Sbjct: 440 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGIC 489
Score = 148 (57.2 bits), Expect = 2.6e-26, Sum P(3) = 2.6e-26
Identities = 42/123 (34%), Positives = 66/123 (53%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G+S LFP+QV +T GP +DL + TG+GKT S+A+P+
Sbjct: 142 NFPISEETIKL-LKGRGVSYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPL 196
Query: 91 VQTLSN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
++ L + R + LV+ PTR+LA QV F I LSV G +S +I
Sbjct: 197 IERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQI 254
Query: 146 SEL 148
+ +
Sbjct: 255 NHI 257
Score = 101 (40.6 bits), Expect = 2.6e-26, Sum P(3) = 2.6e-26
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 247 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 303
Query: 217 WLPTVLQLT-RSDNEN 231
+ ++ + ++D+E+
Sbjct: 304 QVEDIIHESYKTDSED 319
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 198 (74.8 bits), Expect = 2.6e-26, Sum P(3) = 2.6e-26
Identities = 56/177 (31%), Positives = 91/177 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATL + + A+ L P+ + + KL E+L++ + K L+ LLQ+
Sbjct: 274 VLFSATLPKLLVEFARAGLTEPVLIRL-DVDSKLNEQLKTSFFLVREDTKTAVLLYLLQN 332
Query: 330 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ +++ +VF ++ L LL G I YS L Q+ R L F K
Sbjct: 333 VVRPQDQNVVFVATKHHAEYLTELLTGQGVSCAHI--YSALD-QTARKINLAKFTHNKCS 389
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
L+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DEV
Sbjct: 390 TLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 446
Score = 131 (51.2 bits), Expect = 2.6e-26, Sum P(3) = 2.6e-26
Identities = 32/104 (30%), Positives = 54/104 (51%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 110
+ V + ++TI L +D+ + TGSGKT + LP+ + L R+ + RAL++ PT
Sbjct: 115 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALILSPT 174
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R+LALQ + GL L +G + D+ + L + P +
Sbjct: 175 RELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDI 218
Score = 94 (38.1 bits), Expect = 2.6e-26, Sum P(3) = 2.6e-26
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 206 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 264
>WB|WBGene00021277 [details] [associations]
symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
NextBio:872791 Uniprot:Q9N478
Length = 732
Score = 198 (74.8 bits), Expect = 2.7e-26, Sum P(3) = 2.7e-26
Identities = 55/185 (29%), Positives = 94/185 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKL-PERLESYKLICESKLKPLYLVALLQ 328
++ SAT T++ L ++ + P+F++ E P+ L+ +I E + K L + ++
Sbjct: 257 LLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSFIE 316
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 386
+ ++K +VF SS + R T F +LR + + G Q R +T F E K
Sbjct: 317 AHRKKKSLVFVSSCKQA-RFLT--EAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKA 373
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDEVC 445
VL+++D +RG+D E ++ V+ D PA I YIHR GR+AR G ++ E
Sbjct: 374 AVLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEA 433
Query: 446 LVGCL 450
++G L
Sbjct: 434 MIGKL 438
Score = 124 (48.7 bits), Expect = 2.7e-26, Sum P(3) = 2.7e-26
Identities = 34/91 (37%), Positives = 50/91 (54%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC----LRALVVLPTRDL 113
+ ++TI L D+ + TGSGKTL+ +P+++ L RA L AL++ PTR+L
Sbjct: 102 IQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALW-RAKWSPDYGLGALIISPTREL 160
Query: 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
ALQ A+ G S GL +G S +A E
Sbjct: 161 ALQTFSTINAVGAHHGFSCGLVIGGSDVAFE 191
Score = 97 (39.2 bits), Expect = 2.7e-26, Sum P(3) = 2.7e-26
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 157 GICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY 214
G+ DV E S ++I+V TPGRL+ H++ + + L LV+DE DR+L +
Sbjct: 180 GLVIGGSDVAFERNRISGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGF 239
Query: 215 QAWLPTVLQLTRSDNENR-FSDAST 238
L +++ ++ + FS T
Sbjct: 240 SKQLNSIINNLPAERQTLLFSATQT 264
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 218 (81.8 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26
Identities = 64/193 (33%), Positives = 96/193 (49%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ KL + L +P+ +T E + K P +L +Y +C ++ K LV
Sbjct: 200 LFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNYYTMCRAEEKFNTLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYS-----GLQRQSVRSKTL 378
A L+ EK +VF S+ C + +FG+ L + +K S G + R+K
Sbjct: 260 AFLRQHKHEKQLVFFST-------CACVEYFGKALEVLVKNVSIHCIHGKMKHK-RNKIF 311
Query: 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
FR K +LV +D M RG+D+ VN V+ YD P+ +++HR GRTAR G G
Sbjct: 312 ADFRALKSGILVCTDVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRTARIGNQGNALVF 371
Query: 439 LHKDEVCLVGCLT 451
L E V L+
Sbjct: 372 LLPMEESYVNFLS 384
Score = 154 (59.3 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26
Identities = 63/219 (28%), Positives = 102/219 (46%)
Query: 32 LPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
LP L + L+ +G + + PVQ A I + +D+ + TGSGKTL++ +P
Sbjct: 12 LPVKLHDNILQTLKELGFTYMTPVQSAC----IPLFMSNKDVAAEAVTGSGKTLAFVIPA 67
Query: 91 VQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEI 145
++ L R + + AL++ PTR+LA+Q+ +V + L +G S+ +++
Sbjct: 68 LEILLKREEKLKKMQVGALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDV 127
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTL----EHLCY 200
+L + Q A +I++ATPGRL D G L + L
Sbjct: 128 EKL-------------------KTQGA-NIIIATPGRLEDMFRRKADGLDLATAVKSLDV 167
Query: 201 LVVDETDRLLREAYQAWLPTVL-QLTRSDNENRFSDAST 238
LV+DE DRLL ++A L T+L L + FS T
Sbjct: 168 LVLDEADRLLDMGFEASLNTILGYLPKQRRTGLFSATQT 206
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 224 (83.9 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
Identities = 55/186 (29%), Positives = 95/186 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT +LAQ L P+ + G ++ ++ K ++ ++S
Sbjct: 426 VMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFIES 485
Query: 330 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ ++K I+F S L + L G I ++ G + Q R + LK F+ GK+++
Sbjct: 486 MSPKDKVIIFVSRKAVADHLSSDL---GIRHISVESLHGNREQGDRERALKNFKTGKVRI 542
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVG 448
L+++D +RG+DV V +V NYD P I+ Y+HR GRT RAG+ G TL+ + + + G
Sbjct: 543 LIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAG 602
Query: 449 CLTPLL 454
L +L
Sbjct: 603 ELIHIL 608
Score = 148 (57.2 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
Identities = 63/216 (29%), Positives = 96/216 (44%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
D C P + + ++ G P+Q W I G+ DL + TG+GKTLSY +P
Sbjct: 244 DAFQCY-PEVMINIKKAGFQKPTPIQSQAWP-IILQGI---DLIGVAQTGTGKTLSYLMP 298
Query: 90 -IVQTLSNRAVRCL-RA------LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
+ S V L RA LV+ PTR+LALQV+ + + GL G
Sbjct: 299 GFIHVDSQPVVFSLQRARNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCVYGGGDR 357
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYL 201
+I +L+K VDI++ATPGRL D + L+ + YL
Sbjct: 358 DGQIKDLLK---------------------GVDIIIATPGRLND-LQMNNFVYLKSISYL 395
Query: 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
V+DE D++L ++ + +L R D + + A+
Sbjct: 396 VLDEADKMLDMGFEPQIMKILLDIRPDRQTVMTSAT 431
>UNIPROTKB|F1MMK3 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
Uniprot:F1MMK3
Length = 737
Score = 173 (66.0 bits), Expect = 4.1e-26, Sum P(3) = 4.1e-26
Identities = 50/170 (29%), Positives = 85/170 (50%)
Query: 270 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 328 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGIC 488
Score = 144 (55.7 bits), Expect = 4.1e-26, Sum P(3) = 4.1e-26
Identities = 40/123 (32%), Positives = 66/123 (53%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G++ LFP+QV +T GP +DL + TG+GKT S+A+P+
Sbjct: 141 NFPISEETIKL-LKGRGVTYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPL 195
Query: 91 VQTLSN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
++ L + R + LV+ PTR+LA QV F + LSV G +S +I
Sbjct: 196 IERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDVTRK--LSVACFYGGTSYQSQI 253
Query: 146 SEL 148
+ +
Sbjct: 254 NHI 256
Score = 103 (41.3 bits), Expect = 4.1e-26, Sum P(3) = 4.1e-26
Identities = 23/76 (30%), Positives = 45/76 (59%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 246 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 302
Query: 217 WLPTVLQLT-RSDNEN 231
+ +L + ++D+E+
Sbjct: 303 QVEDILHESYKTDSED 318
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 200 (75.5 bits), Expect = 4.4e-26, Sum P(3) = 4.4e-26
Identities = 56/177 (31%), Positives = 92/177 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATL + + A+ L P+ + + KL E+L++ + K L+ LL++
Sbjct: 275 VLFSATLPKLLVEFARAGLTEPVLIRL-DVDSKLNEQLKTSFFLVREDAKAAVLLHLLRN 333
Query: 330 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ +++ +VF ++ L LL G I YS L Q+ R L F GK
Sbjct: 334 VVRPQDQTVVFVATKHHAEYLSELLATQGVSCAHI--YSALD-QTARKINLARFTHGKCS 390
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
L+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DEV
Sbjct: 391 ALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 447
Score = 126 (49.4 bits), Expect = 4.4e-26, Sum P(3) = 4.4e-26
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 110
+ V + ++TI L +D+ + TGSGKT + +P+ + L + + RAL++ PT
Sbjct: 116 YKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFERLKTHSAQTGARALILSPT 175
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R+LALQ + GL L +G + D+ + L + P +
Sbjct: 176 RELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDI 219
Score = 94 (38.1 bits), Expect = 4.4e-26, Sum P(3) = 4.4e-26
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 207 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 265
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 217 (81.4 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 57/185 (30%), Positives = 94/185 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT + D LA+ LH+PL + R +++ + + K K L ++
Sbjct: 184 LLFSATFSDDIKALAEKLLHNPLEIEVAR-RNTASDQVTQHVHFVDKKRKRELLSHMIGK 242
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
++ +VFT + + L LN G I+ G + Q R++ L F+ G I+VL
Sbjct: 243 GNWQQVLVFTRTKHGANHLAEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVL 299
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGC 449
V++D RG+D+E + +VVNY+ P + Y+HR GRT RA G +L+ DE L+
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Query: 450 LTPLL 454
+ LL
Sbjct: 360 IEKLL 364
Score = 148 (57.2 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 55/165 (33%), Positives = 82/165 (49%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
L P + A+ G P+Q Q+ I P + E RDL ++ TG+GKT + LP++Q
Sbjct: 8 LSPDILRAVAEQGYREPTPIQ----QQAI-PAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 94 LSNRAV-----RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
L R R +RAL++ PTR+LA Q+ G V S I L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQI---------------GENVRDYSKYLNIRSL 107
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD--HINATR 191
+ + G+ +P+ + +L+ VD+LVATPGRL+D H NA +
Sbjct: 108 V----VFGGVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK 146
Score = 107 (42.7 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMD--HINATRGFTLEHLCYLVVDETDRLLREAY 214
G+ +P+ + +L+ VD+LVATPGRL+D H NA + L+ + LV+DE DR+L +
Sbjct: 112 GVSINPQ--MMKLRGGVDVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRMLDMGF 166
Query: 215 QAWLPTVLQLTRSDNENRFSDASTF 239
+ VL + +N A TF
Sbjct: 167 IHDIRRVLTKLPAKRQNLLFSA-TF 190
>UNIPROTKB|Q9NY93 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0003723 EMBL:CH236960 EMBL:CH471128
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
CleanEx:HS_DDX21 CTD:54606 HOVERGEN:HBG051334 OrthoDB:EOG47H5PT
EMBL:AJ131712 EMBL:AF247666 EMBL:AL136700 EMBL:AK022774
EMBL:AK315363 EMBL:CR457213 EMBL:AC004938 EMBL:BC001235
IPI:IPI00302281 IPI:IPI00925037 RefSeq:NP_001244118.1
RefSeq:NP_061955.1 UniGene:Hs.654762 ProteinModelPortal:Q9NY93
SMR:Q9NY93 IntAct:Q9NY93 STRING:Q9NY93 PhosphoSite:Q9NY93
DMDM:20139238 SWISS-2DPAGE:Q9NY93 PaxDb:Q9NY93 PRIDE:Q9NY93
DNASU:54606 Ensembl:ENST00000258772 Ensembl:ENST00000431640
GeneID:54606 KEGG:hsa:54606 UCSC:uc003tlg.3 GeneCards:GC07M044571
HGNC:HGNC:18193 HPA:HPA019749 MIM:608023 neXtProt:NX_Q9NY93
PharmGKB:PA134916346 InParanoid:Q9NY93 PhylomeDB:Q9NY93
GenomeRNAi:54606 NextBio:57133 ArrayExpress:Q9NY93 Bgee:Q9NY93
CleanEx:HS_DDX56 Genevestigator:Q9NY93 GermOnline:ENSG00000136271
Uniprot:Q9NY93
Length = 547
Score = 161 (61.7 bits), Expect = 4.7e-26, Sum P(3) = 4.7e-26
Identities = 59/199 (29%), Positives = 97/199 (48%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
+H+ LDPRL A+ ++G S +Q ++ I L +DL + TGSGKT +YA+P
Sbjct: 10 EHMG-LDPRLLQAVTDLGWSRPTLIQ----EKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 90 IVQTLSNRAV------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
++Q L +R + +R LV++PT++LA Q + + +A V +A S+ D
Sbjct: 65 MLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVA-NVSAAED 123
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
+S+ VL E D++V TP R++ H+ + L LVV
Sbjct: 124 SVSQ---------------RAVLMEKP---DVVVGTPSRILSHLQQDSLKLRDSLELLVV 165
Query: 204 DETDRLLREAYQAWLPTVL 222
DE D L ++ L ++L
Sbjct: 166 DEADLLFSFGFEEELKSLL 184
Score = 148 (57.2 bits), Expect = 4.7e-26, Sum P(3) = 4.7e-26
Identities = 42/142 (29%), Positives = 77/142 (54%)
Query: 265 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 322
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 188 PRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 323 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381
L ALL+ SL K ++F +++E ++RL L F I +G R + F
Sbjct: 248 LYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFS---IPTCVLNGELPLRSRCHIISQF 304
Query: 382 REGKIQVLVSSDAMTRGMDVEG 403
+G ++++DA G V+G
Sbjct: 305 NQGFYDCVIATDAEVLGAPVKG 326
Score = 106 (42.4 bits), Expect = 4.7e-26, Sum P(3) = 4.7e-26
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLL 454
+ RG+D V+ V+N+D P + YIHRAGRTARA G T + E +G + LL
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGKIEELL 404
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 173 (66.0 bits), Expect = 5.1e-26, Sum P(3) = 5.1e-26
Identities = 50/170 (29%), Positives = 85/170 (50%)
Query: 270 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 320 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 379
Query: 328 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 380 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 435
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C
Sbjct: 436 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGIC 485
Score = 143 (55.4 bits), Expect = 5.1e-26, Sum P(3) = 5.1e-26
Identities = 39/111 (35%), Positives = 61/111 (54%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-----R 97
L+ G++ LFP+QV +T GP +DL + TG+GKT S+A+P+++ L +
Sbjct: 149 LKGRGVTYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIK 204
Query: 98 AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
R + LV+ PTR+LA QV F I LSV G +S +I+++
Sbjct: 205 KSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQI 253
Score = 103 (41.3 bits), Expect = 5.1e-26, Sum P(3) = 5.1e-26
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G Y + + ++++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 243 GTSYQSQ--INQIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 299
Query: 217 WLPTVLQLT-RSDNEN 231
+ ++ + ++D+E+
Sbjct: 300 QVEDIIHESYKTDSED 315
>UNIPROTKB|Q9BQ39 [details] [associations]
symbol:DDX50 "ATP-dependent RNA helicase DDX50"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
Length = 737
Score = 173 (66.0 bits), Expect = 5.2e-26, Sum P(3) = 5.2e-26
Identities = 50/170 (29%), Positives = 85/170 (50%)
Query: 270 MVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327
++ SAT Q K+A+ + + G+ K +E + C +P + +L
Sbjct: 323 LLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVL 382
Query: 328 Q--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385
Q S E + I+F + ++ + +N ++ + G QS R TLK FREG
Sbjct: 383 QVYSGSEGRAIIFCETKKNVTEMA--MNP--HIKQNAQCLHGDIAQSQREITLKGFREGS 438
Query: 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435
+VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG+ G C
Sbjct: 439 FKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGIC 488
Score = 145 (56.1 bits), Expect = 5.2e-26, Sum P(3) = 5.2e-26
Identities = 41/123 (33%), Positives = 66/123 (53%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G++ LFP+QV +T GP +DL + TG+GKT S+A+P+
Sbjct: 141 NFPISEETIKL-LKGRGVTYLFPIQV----KTFGPVYEGKDLIAQARTGTGKTFSFAIPL 195
Query: 91 VQTLSN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
++ L + R + LV+ PTR+LA QV F I LSV G +S +I
Sbjct: 196 IERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQI 253
Query: 146 SEL 148
+ +
Sbjct: 254 NHI 256
Score = 101 (40.6 bits), Expect = 5.2e-26, Sum P(3) = 5.2e-26
Identities = 22/76 (28%), Positives = 45/76 (59%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G Y + + +++ +DILV TPGR+ DH+ + R L L ++V+DE D++L +
Sbjct: 246 GTSYQSQ--INHIRNGIDILVGTPGRIKDHLQSGR-LDLSKLRHVVLDEVDQMLDLGFAE 302
Query: 217 WLPTVLQLT-RSDNEN 231
+ ++ + ++D+E+
Sbjct: 303 QVEDIIHESYKTDSED 318
>UNIPROTKB|J9P4L6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AAEX03026218 Ensembl:ENSCAFT00000021498 Uniprot:J9P4L6
Length = 598
Score = 205 (77.2 bits), Expect = 5.3e-26, Sum P(3) = 5.3e-26
Identities = 60/196 (30%), Positives = 95/196 (48%)
Query: 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
+ + SA D + +L+L + + ++ G R E +E L S+ L + L
Sbjct: 348 RAMFSAIFAYDVEQWCKLNLDNVITVSIG-ARNSAVETVEQELLFVGSETGKLLAMRELV 406
Query: 329 SLG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
G +VF S+E L L + G + + + Q+Q R T+ +FR GKI
Sbjct: 407 KKGFNPPVLVFVQSIERAKELFHELIYEG-INVDVIHADRTQQQ--RDNTVHSFRAGKIW 463
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV 447
VL+ + + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 464 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDD---- 519
Query: 448 GCLTPLLLCTSDILQR 463
PLL ++++Q+
Sbjct: 520 ---KPLLRSVANVIQQ 532
Score = 139 (54.0 bits), Expect = 5.3e-26, Sum P(3) = 5.3e-26
Identities = 35/118 (29%), Positives = 63/118 (53%)
Query: 28 PLDHLPCLDPRLKV---ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
P+ LD K+ LQN+ + + F + + I L R+L ++PTGSGKTL
Sbjct: 158 PIATFQQLDQEYKINSRLLQNI-LDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTL 216
Query: 85 SYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA 142
++++PI+ L + RAL++ PTR+LA Q+ I+ G + + + ++++A
Sbjct: 217 AFSIPILMQLKQPTNKGFRALIISPTRELANQIHRELVKISEGTGFRIHM-IHKAAVA 273
Score = 67 (28.6 bits), Expect = 5.3e-26, Sum P(3) = 5.3e-26
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE 212
DILV TP RL+ + G L + +LVVDE+D+L +
Sbjct: 286 DILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFED 325
>UNIPROTKB|Q2NL08 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:BC111255 IPI:IPI00726158
RefSeq:NP_001039472.1 UniGene:Bt.74315 PRIDE:Q2NL08 GeneID:508581
KEGG:bta:508581 CTD:57696 HOGENOM:HOG000268803 HOVERGEN:HBG107796
InParanoid:Q2NL08 KO:K14809 OrthoDB:EOG4WH8KN NextBio:20868584
Uniprot:Q2NL08
Length = 601
Score = 206 (77.6 bits), Expect = 6.5e-26, Sum P(2) = 6.5e-26
Identities = 66/217 (30%), Positives = 105/217 (48%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE++ ++C++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMVCKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L++ +EK +VF S+ L + +KI G + R+K FR+
Sbjct: 260 HFLRNHKQEKHLVFFSTCACVEYYGKALETLVK-GVKIMCIHGKMKYK-RNKIFMEFRKL 317
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 QSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLPMEE 377
Query: 445 CLVGCLTPLLLCTSDILQRKTRLQKSKSRLRHKNYAL 481
+ L C LQ + +LQK+ + L K A+
Sbjct: 378 SYISFLAINQKCP---LQ-EMKLQKNTADLLPKLKAM 410
Score = 164 (62.8 bits), Expect = 6.5e-26, Sum P(2) = 6.5e-26
Identities = 67/221 (30%), Positives = 105/221 (47%)
Query: 30 DHLPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88
+ LP L P++ L+ +G + PVQ A TI + +D+ + TGSGKTL++ +
Sbjct: 10 ESLPVPLHPKVLSVLRELGFPYMTPVQSA----TIPLFMKNKDVAAEAVTGSGKTLAFVI 65
Query: 89 PIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIA-PAVGLSVGLAVGQSSIAD 143
PI + L R + + A+++ PTR+LA+Q+++V + P S L +G
Sbjct: 66 PIEEILLRREEKFKKSQVGAIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGG----- 120
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TRGFTL----EHL 198
+ P G EDV + + +I+VATPGRL D G L L
Sbjct: 121 ------RNP----G-----EDVARFKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSL 165
Query: 199 CYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL ++ + T+L+ L + FS T
Sbjct: 166 EVLVLDEADRLLDMGFETSINTILEFLPKQRRTGLFSATQT 206
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 200 (75.5 bits), Expect = 7.1e-26, Sum P(2) = 7.1e-26
Identities = 58/176 (32%), Positives = 90/176 (51%)
Query: 270 MVLSATLTQDPNKLA-QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SATL + + LA +L + PL + TR + +E + K L+ALL+
Sbjct: 208 LLFSATLPEALDSLAGKLLTNDPLKVEAS-TRNAVVGEIEEQLYLVNKGSKAQALIALLK 266
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ +VF S+ + + L G I G + Q+VRS+TL F+ +IQV
Sbjct: 267 QYQWPQVLVFISARDDADAIAKRLVKAG---INAAALHGEKDQTVRSQTLADFKADRIQV 323
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
LV++D M RG+ V+ + V+N D P Y+HR GRTARAG G +L+ E+
Sbjct: 324 LVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEM 379
Score = 165 (63.1 bits), Expect = 7.1e-26, Sum P(2) = 7.1e-26
Identities = 62/200 (31%), Positives = 99/200 (49%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--------SNRAVRCLR--ALVV 107
V Q I L RDL S TGSGKT ++ LP++Q L + ++V + ALV+
Sbjct: 42 VQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVL 101
Query: 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 167
+PTR+LALQV + A+A + S L + +L L G+ + + L
Sbjct: 102 VPTRELALQVSEALHALASQLSTSAPLNI----------QL-----LCGGVALEQQ--LA 144
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227
+L + ++VATPGRL+D + +L+ + +LV+DE DRLL + + ++ +
Sbjct: 145 DLSAKPQLVVATPGRLLDLCTQSH-ISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMPK 203
Query: 228 DNENRFSDASTFLPSAFGSL 247
+ A+ LP A SL
Sbjct: 204 RKQTLLFSAT--LPEALDSL 221
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 200 (75.5 bits), Expect = 7.1e-26, Sum P(2) = 7.1e-26
Identities = 58/176 (32%), Positives = 90/176 (51%)
Query: 270 MVLSATLTQDPNKLA-QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SATL + + LA +L + PL + TR + +E + K L+ALL+
Sbjct: 208 LLFSATLPEALDSLAGKLLTNDPLKVEAS-TRNAVVGEIEEQLYLVNKGSKAQALIALLK 266
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ +VF S+ + + L G I G + Q+VRS+TL F+ +IQV
Sbjct: 267 QYQWPQVLVFISARDDADAIAKRLVKAG---INAAALHGEKDQTVRSQTLADFKADRIQV 323
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
LV++D M RG+ V+ + V+N D P Y+HR GRTARAG G +L+ E+
Sbjct: 324 LVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEM 379
Score = 165 (63.1 bits), Expect = 7.1e-26, Sum P(2) = 7.1e-26
Identities = 62/200 (31%), Positives = 99/200 (49%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL--------SNRAVRCLR--ALVV 107
V Q I L RDL S TGSGKT ++ LP++Q L + ++V + ALV+
Sbjct: 42 VQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVL 101
Query: 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ 167
+PTR+LALQV + A+A + S L + +L L G+ + + L
Sbjct: 102 VPTRELALQVSEALHALASQLSTSAPLNI----------QL-----LCGGVALEQQ--LA 144
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227
+L + ++VATPGRL+D + +L+ + +LV+DE DRLL + + ++ +
Sbjct: 145 DLSAKPQLVVATPGRLLDLCTQSH-ISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMPK 203
Query: 228 DNENRFSDASTFLPSAFGSL 247
+ A+ LP A SL
Sbjct: 204 RKQTLLFSAT--LPEALDSL 221
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 180 (68.4 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 60/217 (27%), Positives = 103/217 (47%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP-ERLESYKLICESKLKPLYLVALLQS 329
+ SAT + LA++ L P+++ E R ++ E LE + S ++ L+L+ L+
Sbjct: 337 LFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKR 396
Query: 330 L-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
G++K +VF S+ +ST L + ++ E G Q+ R+ T F + + +
Sbjct: 397 FQGKKKIMVFFSTCKSTKFHAELFRY---IKFDCLEIRGGIDQNKRTPTFLQFIKAETGI 453
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQLGRCFTLLHKDEVCLV 447
L+ ++ RG+D V+ +V YD P YIHR GRTAR G G+ +L E+ +
Sbjct: 454 LLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFI 513
Query: 448 GCLTPLLLCTSDILQRKTRLQKSK---SRLRHKNYAL 481
L + + + +L K L +NYAL
Sbjct: 514 QYLKAAKIPVEEHEFEEKKLLDVKPFVENLISENYAL 550
Score = 137 (53.3 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
L V++LVATPGRL+DH+ T GF ++L +LV+DE DR+L + ++ L +L L
Sbjct: 273 LAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNL 328
Score = 97 (39.2 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 37/135 (27%), Positives = 61/135 (45%)
Query: 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTG 79
+ S+ + + L D K +++ MG + + +Q + I P + D+ + TG
Sbjct: 147 ETSIMTNKTFESLSLSDNTYK-SIKEMGFARMTQIQA----KAIPPLMMGEDVLGAARTG 201
Query: 80 SGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLA 135
SGKTL++ +P V+ L R R LV+ PTR+LA+Q V + +VG
Sbjct: 202 SGKTLAFLIPAVELLY-RVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKV 260
Query: 136 VGQSSIADEISELIK 150
+G E L K
Sbjct: 261 IGGEKRKTEAEILAK 275
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 191 (72.3 bits), Expect = 8.4e-26, Sum P(3) = 8.4e-26
Identities = 46/133 (34%), Positives = 67/133 (50%)
Query: 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366
+ + E K K L L L + I+F +S T+R+ L EL
Sbjct: 242 ISQFYAFVEEKQKLHCLNTLFSKLQINQSIIFCNS---TNRVELLAKKITELGYSCYYSH 298
Query: 367 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426
Q R+K FR+GK++ LV SD +TRG+D++ VN V+N+D P +TY+HR GR+
Sbjct: 299 AKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 358
Query: 427 ARAGQLGRCFTLL 439
R G LG L+
Sbjct: 359 GRFGHLGLAINLM 371
Score = 135 (52.6 bits), Expect = 8.4e-26, Sum P(3) = 8.4e-26
Identities = 33/104 (31%), Positives = 56/104 (53%)
Query: 46 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104
MGI F + +E+I L RD+ + G+GKT S+ +P +Q + + + ++A
Sbjct: 43 MGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNK-VQA 101
Query: 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
L+++PTR+LALQ V + VG + G +S+ D+I L
Sbjct: 102 LILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRL 145
Score = 83 (34.3 bits), Expect = 8.4e-26, Sum P(3) = 8.4e-26
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
+D+++ L V ILV TPGR++D + A + L V+DE D++L ++ + +L
Sbjct: 140 DDIVR-LHDPVHILVGTPGRVLD-LAARKVVDLSECPLFVMDEADKMLSREFKGIIEQIL 197
Query: 223 QLTRSDNENRFSDASTFLPSAFGS 246
+ N ++TF P A S
Sbjct: 198 EFF-PPNRQALLFSATF-PLAVKS 219
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 191 (72.3 bits), Expect = 8.4e-26, Sum P(3) = 8.4e-26
Identities = 46/133 (34%), Positives = 67/133 (50%)
Query: 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366
+ + E K K L L L + I+F +S T+R+ L EL
Sbjct: 242 ISQFYAFVEEKQKLHCLNTLFSKLQINQSIIFCNS---TNRVELLAKKITELGYSCYYSH 298
Query: 367 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426
Q R+K FR+GK++ LV SD +TRG+D++ VN V+N+D P +TY+HR GR+
Sbjct: 299 AKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 358
Query: 427 ARAGQLGRCFTLL 439
R G LG L+
Sbjct: 359 GRFGHLGLAINLM 371
Score = 135 (52.6 bits), Expect = 8.4e-26, Sum P(3) = 8.4e-26
Identities = 33/104 (31%), Positives = 56/104 (53%)
Query: 46 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104
MGI F + +E+I L RD+ + G+GKT S+ +P +Q + + + ++A
Sbjct: 43 MGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNK-VQA 101
Query: 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
L+++PTR+LALQ V + VG + G +S+ D+I L
Sbjct: 102 LILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRL 145
Score = 83 (34.3 bits), Expect = 8.4e-26, Sum P(3) = 8.4e-26
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
+D+++ L V ILV TPGR++D + A + L V+DE D++L ++ + +L
Sbjct: 140 DDIVR-LHDPVHILVGTPGRVLD-LAARKVVDLSECPLFVMDEADKMLSREFKGIIEQIL 197
Query: 223 QLTRSDNENRFSDASTFLPSAFGS 246
+ N ++TF P A S
Sbjct: 198 EFF-PPNRQALLFSATF-PLAVKS 219
>UNIPROTKB|F1NJA0 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969 IPI:IPI00590534
OMA:CACVEYW EMBL:AADN02034882 Ensembl:ENSGALT00000005224
Uniprot:F1NJA0
Length = 591
Score = 202 (76.2 bits), Expect = 8.5e-26, Sum P(2) = 8.5e-26
Identities = 60/198 (30%), Positives = 92/198 (46%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E K P RLE+Y +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMICKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L+ +EK +VF S+ L + ++KI G + R+K FR
Sbjct: 260 HFLRQHKQEKHLVFFSTCACVEYYGKALESLIK-QVKIMCIHGKMKHK-RNKIFTEFRRL 317
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+LV +D M RG+D+ V+ V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 AGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTARIGNAGSALVFLLPMEE 377
Query: 445 CLVGCLTPLLLCTSDILQ 462
+ L+ C +Q
Sbjct: 378 SYINFLSINQKCPMQEMQ 395
Score = 167 (63.8 bits), Expect = 8.5e-26, Sum P(2) = 8.5e-26
Identities = 67/219 (30%), Positives = 106/219 (48%)
Query: 32 LPC-LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
LP L P + +ALQ++G + PVQ A TI + +D+ + TGSGKTL++ +PI
Sbjct: 12 LPVPLSPGVLLALQDLGFDRMTPVQSA----TIPLFMSNKDVAAEAVTGSGKTLAFVIPI 67
Query: 91 VQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146
++ L R + + A+++ PTR+LA+Q+ +V + S
Sbjct: 68 LEILLRREEKLKKMQVGAIIITPTRELAIQIDEVLTHFTKHF--------------PKFS 113
Query: 147 ELIKRPKLEAGICYDP-EDVLQELQSAVDILVATPGRLMDHINATR-GFTL----EHLCY 200
+++ L G +P EDV + + +I+VATPGRL D G L + L
Sbjct: 114 QIL----LIGG--RNPMEDVEKFKEHGGNIIVATPGRLEDLFRRKADGLDLASCVKSLDV 167
Query: 201 LVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL +++ L +L L + FS T
Sbjct: 168 LVLDEADRLLDMGFESSLNAILAFLPKQRRTGLFSATQT 206
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 178 (67.7 bits), Expect = 8.8e-26, Sum P(3) = 8.8e-26
Identities = 53/184 (28%), Positives = 91/184 (49%)
Query: 258 GFKDKPY------PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 310
GFK++ Y P ++VL SAT+ QD ++ +++P+ + + L E ++ +
Sbjct: 181 GFKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTL-EGIKQF 239
Query: 311 KLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 369
+ E + K L L S+ + ++F ++ L N E +
Sbjct: 240 YINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVE---FLTNKLREQHFTVSAIHADL 296
Query: 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
Q+ R +K FR G ++L+S+D + RG+DV+ V+ V+NYD PA + YIHR GR R
Sbjct: 297 PQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRF 356
Query: 430 GQLG 433
G+ G
Sbjct: 357 GRKG 360
Score = 138 (53.6 bits), Expect = 8.8e-26, Sum P(3) = 8.8e-26
Identities = 30/89 (33%), Positives = 56/89 (62%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P RD+ + +G+GKT ++ + +Q + N + +AL++ PTR+LALQ
Sbjct: 48 AIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRI-NENEKATQALILAPTRELALQ 106
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
+K+V AI + ++V ++G +S++D+I
Sbjct: 107 IKNVITAIGLYLKVTVHASIGGTSMSDDI 135
Score = 86 (35.3 bits), Expect = 8.8e-26, Sum P(3) = 8.8e-26
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
D ++ +S V I+V TPGR++D I R F + + ++DE D +L ++ + + +
Sbjct: 133 DDIEAFRSGVQIVVGTPGRVLDMIER-RYFKTDKVKMFILDEADEMLSSGFKEQIYNIFR 191
Query: 224 L 224
L
Sbjct: 192 L 192
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 178 (67.7 bits), Expect = 8.8e-26, Sum P(3) = 8.8e-26
Identities = 53/184 (28%), Positives = 91/184 (49%)
Query: 258 GFKDKPY------PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 310
GFK++ Y P ++VL SAT+ QD ++ +++P+ + + L E ++ +
Sbjct: 181 GFKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTL-EGIKQF 239
Query: 311 KLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 369
+ E + K L L S+ + ++F ++ L N E +
Sbjct: 240 YINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVE---FLTNKLREQHFTVSAIHADL 296
Query: 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429
Q+ R +K FR G ++L+S+D + RG+DV+ V+ V+NYD PA + YIHR GR R
Sbjct: 297 PQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRF 356
Query: 430 GQLG 433
G+ G
Sbjct: 357 GRKG 360
Score = 138 (53.6 bits), Expect = 8.8e-26, Sum P(3) = 8.8e-26
Identities = 30/89 (33%), Positives = 56/89 (62%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P RD+ + +G+GKT ++ + +Q + N + +AL++ PTR+LALQ
Sbjct: 48 AIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRI-NENEKATQALILAPTRELALQ 106
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
+K+V AI + ++V ++G +S++D+I
Sbjct: 107 IKNVITAIGLYLKVTVHASIGGTSMSDDI 135
Score = 86 (35.3 bits), Expect = 8.8e-26, Sum P(3) = 8.8e-26
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
D ++ +S V I+V TPGR++D I R F + + ++DE D +L ++ + + +
Sbjct: 133 DDIEAFRSGVQIVVGTPGRVLDMIER-RYFKTDKVKMFILDEADEMLSSGFKEQIYNIFR 191
Query: 224 L 224
L
Sbjct: 192 L 192
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 217 (81.4 bits), Expect = 9.5e-26, Sum P(2) = 9.5e-26
Identities = 58/179 (32%), Positives = 98/179 (54%)
Query: 270 MVLSATLTQDPNKLAQLDLHHP--LFLTTGETRYKLPERLES--YKLICESKLKPLYLVA 325
++ SAT + D LA LH+P + +T T ER+E ++L K L+A
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTV---ERIEQRVFRLAANHKRS---LLA 241
Query: 326 LLQSLGE-EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L ++G E+ +VFT + +RL L+ G + I G + Q+ R+K L F+ G
Sbjct: 242 HLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIH---GNKSQNARTKALADFKAG 298
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
++++V++D RG+D++ + +VVN++ P + Y+HR GRT RAG+ G +L+ DE
Sbjct: 299 DVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357
Score = 151 (58.2 bits), Expect = 9.5e-26, Sum P(2) = 9.5e-26
Identities = 66/214 (30%), Positives = 94/214 (43%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L A++ G + PVQ Q I L RDL + + TG+GKT +ALPI++ L
Sbjct: 8 LSEALVRAIEAAGYTQPTPVQ----QRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERL 63
Query: 95 SNRAV---------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145
V R R LV+ PTR+LA QV + F A + G
Sbjct: 64 FPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFG-------- 115
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
G+ +P+ +Q + VD+LVA PGRL+D + L H+ LV+DE
Sbjct: 116 -----------GVGMNPQ--VQAMSRGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDE 161
Query: 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239
DR+L + + VL + +N A TF
Sbjct: 162 ADRMLDMGFVHDVKKVLARLPAKRQNLLFSA-TF 194
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 197 (74.4 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 59/192 (30%), Positives = 92/192 (47%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-LPERLESYKLI 313
+ER + P R M+ SAT+ LA+ + P + + + E +
Sbjct: 193 IERILRQIPADRQ-SMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYR 251
Query: 314 CESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQS 372
+ L + LV+ +LQ+ ++FT + + ++ L G + G Q
Sbjct: 252 AHA-LDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERG---FAVGAVHGDLGQL 307
Query: 373 VRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432
R K LKAFR G I VLV++D RG+D++ V +V+NY P K Y+HR GRT RAG+
Sbjct: 308 AREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRT 367
Query: 433 GRCFTLLHKDEV 444
G TL+ DE+
Sbjct: 368 GVAVTLVDWDEL 379
Score = 169 (64.5 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 59/201 (29%), Positives = 96/201 (47%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-SNRAVR 100
AL GI F +Q + T+ L D+ + TG GKT ++ +P++Q + S R
Sbjct: 24 ALGEEGIKRPFAIQ----ELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITSGDGTR 79
Query: 101 CL----RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA 156
L RALVV+PTR+L LQV D A L+ G + A + + +
Sbjct: 80 PLTGAPRALVVVPTRELCLQVTDDLATAGKY--LTAG---PDTDDAAAVRRRLSVVSIYG 134
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G Y+P+ ++ L++ D++V TPGRL+D L L LV+DE D +L +
Sbjct: 135 GRPYEPQ--IEALRAGADVVVGTPGRLLDLCQQGH-LQLGGLSVLVLDEADEMLDLGFLP 191
Query: 217 WLPTVLQLTRSDNENRFSDAS 237
+ +L+ +D ++ A+
Sbjct: 192 DIERILRQIPADRQSMLFSAT 212
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 193 (73.0 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 60/179 (33%), Positives = 87/179 (48%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES-YKLICESKLKPLYLVALLQS 329
+ SAT T L +L L P+F+ T+ ERL+ Y L+ E K + L L L+
Sbjct: 331 LFSATQTTKVESLIRLSLQKPIFIEV-TTKIATVERLQQGYALVDEDK-RFLLLFTFLKK 388
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS--GLQRQSVRSKTLKAFREGKIQ 387
+K +VF ++ S LLN+ I I Y G ++Q+ R K+ F K
Sbjct: 389 NMSKKIMVFFNNCMSVQFYNDLLNY-----IDIPTYCIHGKKKQNKRLKSFHDFSAAKCA 443
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEV 444
+L+ ++ RG+D+ VN ++ YD P K YIHR GRT R GQ G L K E+
Sbjct: 444 ILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCR-GQDSNGSAIIFLMKHEL 501
Score = 119 (46.9 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNEN 231
++IL+ATPGRL+DH+ T+ F ++L L++DE DRLL+ ++ + +++ L +
Sbjct: 271 INILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQTA 330
Query: 232 RFSDAST 238
FS T
Sbjct: 331 LFSATQT 337
Score = 96 (38.9 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 34/131 (25%), Positives = 62/131 (47%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
+ + + L D LK L+ + +L +Q + I L +D+ + TGSGKT
Sbjct: 145 YSELKFEELNICDA-LKKGLKELNFVTLTEIQA----KCIPHFLSGKDILGAAKTGSGKT 199
Query: 84 LSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138
L++ +P + L N ++ L L++ PTR+L LQ+ V + + + G+ +G
Sbjct: 200 LAFLVPSINILYN--IKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGG 257
Query: 139 SSIADEISELI 149
S +E + I
Sbjct: 258 MSRNEEKKKFI 268
Score = 42 (19.8 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 279 DPNKLAQLDLHHPLFLTTGETRYKLP-ERLESY 310
DPNKL + H +T +K+ E +SY
Sbjct: 520 DPNKLINIQSHIQSIVTKNFHLHKMAREAFKSY 552
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 193 (73.0 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 60/179 (33%), Positives = 87/179 (48%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES-YKLICESKLKPLYLVALLQS 329
+ SAT T L +L L P+F+ T+ ERL+ Y L+ E K + L L L+
Sbjct: 331 LFSATQTTKVESLIRLSLQKPIFIEV-TTKIATVERLQQGYALVDEDK-RFLLLFTFLKK 388
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS--GLQRQSVRSKTLKAFREGKIQ 387
+K +VF ++ S LLN+ I I Y G ++Q+ R K+ F K
Sbjct: 389 NMSKKIMVFFNNCMSVQFYNDLLNY-----IDIPTYCIHGKKKQNKRLKSFHDFSAAKCA 443
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEV 444
+L+ ++ RG+D+ VN ++ YD P K YIHR GRT R GQ G L K E+
Sbjct: 444 ILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCR-GQDSNGSAIIFLMKHEL 501
Score = 119 (46.9 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNEN 231
++IL+ATPGRL+DH+ T+ F ++L L++DE DRLL+ ++ + +++ L +
Sbjct: 271 INILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQTA 330
Query: 232 RFSDAST 238
FS T
Sbjct: 331 LFSATQT 337
Score = 96 (38.9 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 34/131 (25%), Positives = 62/131 (47%)
Query: 24 FEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83
+ + + L D LK L+ + +L +Q + I L +D+ + TGSGKT
Sbjct: 145 YSELKFEELNICDA-LKKGLKELNFVTLTEIQA----KCIPHFLSGKDILGAAKTGSGKT 199
Query: 84 LSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138
L++ +P + L N ++ L L++ PTR+L LQ+ V + + + G+ +G
Sbjct: 200 LAFLVPSINILYN--IKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGG 257
Query: 139 SSIADEISELI 149
S +E + I
Sbjct: 258 MSRNEEKKKFI 268
Score = 42 (19.8 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 279 DPNKLAQLDLHHPLFLTTGETRYKLP-ERLESY 310
DPNKL + H +T +K+ E +SY
Sbjct: 520 DPNKLINIQSHIQSIVTKNFHLHKMAREAFKSY 552
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 202 (76.2 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 60/198 (30%), Positives = 92/198 (46%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E K P RLE+Y +IC++ K LV
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMICKADEKFNQLV 259
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L+ +EK +VF S+ L + ++KI G + R+K FR
Sbjct: 260 HFLRQHKQEKHLVFFSTCACVEYYGKALESLIK-QVKIMCIHGKMKHK-RNKIFTEFRRL 317
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+LV +D M RG+D+ V+ V+ YD P+ ++HR GRTAR G G L E
Sbjct: 318 AGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTARIGNAGSALVFLLPMEE 377
Query: 445 CLVGCLTPLLLCTSDILQ 462
+ L+ C +Q
Sbjct: 378 SYINFLSINQKCPMQEMQ 395
Score = 164 (62.8 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 67/219 (30%), Positives = 105/219 (47%)
Query: 32 LP-CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
LP L P + ALQ++G + PVQ A TI + +D+ + TGSGKTL++ +PI
Sbjct: 12 LPVALSPGVLRALQDLGFDRMTPVQSA----TIPLFMSNKDVAAEAVTGSGKTLAFVIPI 67
Query: 91 VQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146
++ L R + + A+++ PTR+LA+Q+ +V + S
Sbjct: 68 LEILLRREEKLKKMQVGAIIITPTRELAIQIDEVLTHFTKHF--------------PKFS 113
Query: 147 ELIKRPKLEAGICYDP-EDVLQELQSAVDILVATPGRLMDHINATR-GFTL----EHLCY 200
+++ L G +P EDV + + +I+VATPGRL D G L + L
Sbjct: 114 QIL----LIGG--RNPMEDVEKFKEHGGNIIVATPGRLEDLFRRKADGLDLASCVKSLDV 167
Query: 201 LVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
LV+DE DRLL +++ L +L L + FS T
Sbjct: 168 LVLDEADRLLDMGFESSLNAILAFLPKQRRTGLFSATQT 206
>UNIPROTKB|A4R715 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
Length = 535
Score = 186 (70.5 bits), Expect = 2.2e-25, Sum P(3) = 2.2e-25
Identities = 56/186 (30%), Positives = 88/186 (47%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER-LESYKLI 313
+E+ + P R V M+ SAT + + ++ +P + + +L R + Y
Sbjct: 210 IEQLLQFHPKDRQV-MLFSATFPISVKEFSDKNMTNPYEINLMD---ELTLRGITQYYAF 265
Query: 314 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
E K K L L L + I+F +S T+R+ L EL +Q
Sbjct: 266 VEEKQKVHCLNTLFSKLQINQSIIFCNS---TNRVELLAKKITELGYSCFYSHAKMQQQA 322
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R++ FR G + LV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG
Sbjct: 323 RNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLG 382
Query: 434 RCFTLL 439
L+
Sbjct: 383 LAINLI 388
Score = 138 (53.6 bits), Expect = 2.2e-25, Sum P(3) = 2.2e-25
Identities = 31/104 (29%), Positives = 59/104 (56%)
Query: 46 MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104
MGI F + +E+I L RD+ + G+GKT ++ +P ++T+ N V ++
Sbjct: 60 MGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALETI-NPKVSKIQC 118
Query: 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
L+++PTR+LA+Q V + +G++V + G +++ D+I L
Sbjct: 119 LILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTTLRDDILRL 162
Score = 81 (33.6 bits), Expect = 2.2e-25, Sum P(3) = 2.2e-25
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
+D+L+ LQ V I+V TPGR++D + L ++DE D+LL + + +L
Sbjct: 157 DDILR-LQDPVHIVVGTPGRILD-LAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLL 214
Query: 223 QLTRSDNE 230
Q D +
Sbjct: 215 QFHPKDRQ 222
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 231 (86.4 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 54/178 (30%), Positives = 98/178 (55%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT + + LA+ +++PL ++ + E++ + + K KP L L++
Sbjct: 189 LLFSATFSPEIRALAKGMVNNPLEISV-DAENSTAEKVTQWLTAVDKKRKPAVLTHLIKE 247
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
++ +VFT + ++L L G I G + Q R+K L AF++G +++L
Sbjct: 248 NNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIH---GNKSQGARTKALAAFKDGSVKIL 304
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV 447
V++D RG+D++ + VVN+D P + Y+HR GRTARAG G+ +L+ DE+ L+
Sbjct: 305 VATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLL 362
Score = 126 (49.4 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 48/173 (27%), Positives = 82/173 (47%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ-VKDVFAAIAPAV 128
RD+ + TG+GKT + LP++Q LS+ + + V R L L +++ A I+ ++
Sbjct: 44 RDVMAAAQTGTGKTAGFTLPLLQRLSSSKGNKVSSNNV---RALILTPTRELAAQISESI 100
Query: 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188
+ G + S+ + G+ +P+ + L+ VD+LVATPGRL+D N
Sbjct: 101 EV-YGKYLNLHSMV-----------VFGGVKINPQ--IARLRQGVDVLVATPGRLLDLYN 146
Query: 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241
R L ++DE DR+L + + ++ D +N A TF P
Sbjct: 147 Q-RAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQNLLFSA-TFSP 197
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 213 (80.0 bits), Expect = 2.6e-25, Sum P(3) = 2.6e-25
Identities = 58/186 (31%), Positives = 92/186 (49%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT ++ LA L + + G T + +C+ K +++ L S
Sbjct: 566 LMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGS 625
Query: 330 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+G +EK IVF + + L +L G I I G + Q R L F+ G + +
Sbjct: 626 VGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIH---GNKSQPERDFVLSQFKNGMVPI 682
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVG 448
++++D +RG+D++ + VVNYD P I+ YIHR GRTARAG G ++LL D L
Sbjct: 683 MIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLAN 742
Query: 449 CLTPLL 454
L +L
Sbjct: 743 ELIKVL 748
Score = 106 (42.4 bits), Expect = 2.6e-25, Sum P(3) = 2.6e-25
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228
L+ V+I++ATPGRL+D + + + L + YLV+DE DR+L ++ + ++ R D
Sbjct: 504 LKKGVEIVIATPGRLIDILESGKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPD 562
Query: 229 NENRFSDAS 237
+ A+
Sbjct: 563 RQTLMFSAT 571
Score = 90 (36.7 bits), Expect = 2.6e-25, Sum P(3) = 2.6e-25
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR--- 103
G + P+Q W + G RD+ + TGSGKTL++ LP + ++ + V LR
Sbjct: 403 GFPNPTPIQSQAWPIAL-KG---RDIIGLAKTGSGKTLAFLLPSIVHINAQPV--LREDD 456
Query: 104 ---ALVVLPTRDLALQVKD 119
LV+ PTR+LALQ+++
Sbjct: 457 GPIVLVLAPTRELALQIQE 475
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 219 (82.2 bits), Expect = 3.3e-25, Sum P(3) = 3.3e-25
Identities = 59/174 (33%), Positives = 88/174 (50%)
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 324
P+L + SAT+ Q +L + +P+ + GE + + + + K L +
Sbjct: 373 PKLKICLFSATMNQQVEELGHSIMKNPIKIIIGEQNAAAITVDQKLIYVGKEEGKLLAVR 432
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L+Q E ++FT S E H L L G I + + Q R +K FR G
Sbjct: 433 QLIQKGLEPPILIFTQSKERAHDLFQELIFDG---INVDVIHSERTQFQRDTIVKKFRMG 489
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
KI VL+ ++ M RGMD +GVN V+N+D P + +YIHR GRT RAG+ G +TL
Sbjct: 490 KIWVLICTELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGRPGVAYTL 543
Score = 120 (47.3 bits), Expect = 3.3e-25, Sum P(3) = 3.3e-25
Identities = 38/108 (35%), Positives = 57/108 (52%)
Query: 16 RSPVDVSLFEDCPLDHLPCLDPRLKVA---LQNM---GISSLFPVQVAVWQETIGPGLFE 69
R VD + D P+ L+ R KV L N+ G P+Q+ V I L E
Sbjct: 182 RIKVDGTDIPD-PMTEFSQLENRFKVRKYLLNNINEIGYKEPSPIQMQV----IPILLKE 236
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
R++ +PTGSGKT S+++PI+Q L R++++ PTR+LA Q+
Sbjct: 237 REVVAIAPTGSGKTASFSIPILQALYEPKKEGFRSVIIAPTRELAQQI 284
Score = 65 (27.9 bits), Expect = 3.3e-25, Sum P(3) = 3.3e-25
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
DIL+ TP RL+ I +L + YLV DE D+L + +Q + V+
Sbjct: 320 DILITTPLRLVYLIKENL-LSLNKVEYLVFDEADKLFDKNFQEQVDIVV 367
>UNIPROTKB|E1C4M1 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AADN02025730 IPI:IPI00593921 ProteinModelPortal:E1C4M1
Ensembl:ENSGALT00000008815 ArrayExpress:E1C4M1 Uniprot:E1C4M1
Length = 604
Score = 210 (79.0 bits), Expect = 4.1e-25, Sum P(3) = 4.1e-25
Identities = 61/192 (31%), Positives = 92/192 (47%)
Query: 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG- 331
SAT D + +L+L + ++ G R E +E L S+ L + L G
Sbjct: 348 SATFAHDVEEWCKLNLDSIVLVSVG-ARNSAAETVEQELLFVGSETGKLTAMRELVKKGF 406
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
+VF S+E L L + G + + + Q+Q R + +FR GKI VL+
Sbjct: 407 APPVLVFVQSIERAKELFHELIYEG-INVDVIHADKTQQQ--RDNVVHSFRAGKIWVLIC 463
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLT 451
+ + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 464 TALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFTEDD-------K 516
Query: 452 PLLLCTSDILQR 463
PLL ++++QR
Sbjct: 517 PLLRSIANVIQR 528
Score = 127 (49.8 bits), Expect = 4.1e-25, Sum P(3) = 4.1e-25
Identities = 34/125 (27%), Positives = 61/125 (48%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P ++ F+ ++ + P++ +Q G P+Q+ + I L R+L ++P
Sbjct: 151 PDPIATFDQLQKEYK--IHPKVIENIQAAGFQVPTPIQM----QAIPVMLHGRELLASAP 204
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
TGSGKTL++ +P++ L + RAL++ PTR+LA Q +A G + +
Sbjct: 205 TGSGKTLAFCIPLLTHLKQPMNKGFRALIISPTRELASQTHRELVKLADGTGFRIHMIQK 264
Query: 138 QSSIA 142
S A
Sbjct: 265 ASEAA 269
Score = 65 (27.9 bits), Expect = 4.1e-25, Sum P(3) = 4.1e-25
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 173 VDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE 212
VDILV TP RL+ + L + +LVVDE+D+L +
Sbjct: 281 VDILVTTPNRLIYLLKQDPPAIDLTSVEWLVVDESDKLFED 321
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 229 (85.7 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 58/177 (32%), Positives = 94/177 (53%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPL--FLTTGE-TRYKLPERLESYKLICESKLKPLYLVAL 326
M+ SAT+++ LA + L P+ F+ + + L + + E +P+ L +L
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPI-LASL 397
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
+ + C+VF + + HRL LL G L ++ E G Q R ++LK F+E +I
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILL---GLLGVRAGELHGNLTQQQRLESLKKFKEEQI 454
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
VL+++D RG+D+ GV V+N+ P + YIHR GRTARAG+ G +L + E
Sbjct: 455 DVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKE 511
Score = 135 (52.6 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 35/109 (32%), Positives = 58/109 (53%)
Query: 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL-----SNRAVRCLRAL 105
++P + TI L RD+C + TG+GKT +Y LP ++ L +N+A+ R L
Sbjct: 178 IYPTPIQA--STIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAIT--RVL 233
Query: 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
V++PTR+L QV V + + VGLA+G + + + L + P +
Sbjct: 234 VLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDI 282
Score = 125 (49.1 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 147 ELIKRPKLEAGICYDPEDV-LQE--LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
+L + ++ G+ DV QE L+ DI++ATPGRL+DHI T FTL+ + L++
Sbjct: 251 QLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLIL 310
Query: 204 DETDRLLREAYQAWLPTVL 222
DE DR+L E + + ++
Sbjct: 311 DEADRMLDEYFAEQMKEII 329
Score = 38 (18.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 14/70 (20%), Positives = 28/70 (40%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
+D+++ +S + + P + + N E L ++ +R L + Q T
Sbjct: 516 KDIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSKTER 575
Query: 223 QLTRSDNENR 232
+L NE R
Sbjct: 576 KLLGQTNERR 585
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 191 (72.3 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 54/175 (30%), Positives = 88/175 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT + LA L P ++ + + ++ + E + + L L L+
Sbjct: 200 LMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKREL-LSELIGV 258
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
++ +VF + ES + L L G IK G + Q R+K L+ F EGK++VL
Sbjct: 259 NNWQQVLVFAGTKESANTLAKELKLDG---IKAALCHGDKTQGARNKALEQFSEGKVRVL 315
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDE 443
V++D RG+D+ + VVN+ P + Y+HR GRT RAG+ G +L+ KDE
Sbjct: 316 VATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDE 370
Score = 168 (64.2 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 52/180 (28%), Positives = 96/180 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQT 93
L L A++ G +L P+Q QE I P + + DL ++ TG+GKT +++LPI+
Sbjct: 8 LSADLLKAVKACGYKNLTPIQ----QEAI-PVIRQGVDLLASAQTGTGKTAAFSLPILDA 62
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
++ +A ++ T + + + K A+ L+ + + +AD I + +
Sbjct: 63 IA-KANHAAKSSTT-STDENSAEEKSASGQAIRALILTPTRELA-NQVADNIKQFSQYLP 119
Query: 154 LEAGICYDPEDVLQE---LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
+++G+ Y + + L+ +D+LVATPGRL++H+ A R L + +LV+DE DR+L
Sbjct: 120 IKSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHL-ALRNVDLSQVKFLVLDEADRML 178
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 193 (73.0 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
Identities = 49/172 (28%), Positives = 85/172 (49%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT ++ +LA+ L++ + + G + +C+ K + L+ LL
Sbjct: 339 LMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTD 398
Query: 330 LGEE---KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
+ E K I+F VE+ R+ + + + G + Q R L +FR G+
Sbjct: 399 ISAENETKTIIF---VETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRH 455
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438
+LV++D RG+DV+ V V+NYD P+ + Y+HR GRT R+ G +TL
Sbjct: 456 SILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTL 507
Score = 118 (46.6 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
Identities = 25/65 (38%), Positives = 42/65 (64%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
++L+ V+I++ATPGRL+D + RG T L+ YLV+DE DR+L ++ + ++Q
Sbjct: 275 RDLERGVEIVIATPGRLIDFLE--RGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 332
Query: 226 RSDNE 230
R D +
Sbjct: 333 RPDRQ 337
Score = 99 (39.9 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVKDV 120
RDL + TGSGKTL+Y LP V ++N+ R R ALV+ PTR+LA Q++ V
Sbjct: 195 RDLVGVAQTGSGKTLAYVLPAVVHINNQP-RLERGDGPIALVLAPTRELAQQIQQV 249
>MGI|MGI:1277172 [details] [associations]
symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1277172 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
OrthoDB:EOG47H5PT EMBL:AK011136 EMBL:AK077514 EMBL:BC018291
IPI:IPI00132957 RefSeq:NP_080814.1 UniGene:Mm.29810
ProteinModelPortal:Q9D0R4 SMR:Q9D0R4 STRING:Q9D0R4
PhosphoSite:Q9D0R4 PaxDb:Q9D0R4 PRIDE:Q9D0R4
Ensembl:ENSMUST00000004507 GeneID:52513 KEGG:mmu:52513
InParanoid:Q9D0R4 ChiTaRS:DDX56 NextBio:309069 Bgee:Q9D0R4
CleanEx:MM_DDX56 Genevestigator:Q9D0R4
GermOnline:ENSMUSG00000004393 Uniprot:Q9D0R4
Length = 546
Score = 153 (58.9 bits), Expect = 4.9e-25, Sum P(3) = 4.9e-25
Identities = 58/199 (29%), Positives = 97/199 (48%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
+H+ LDPRL A+ ++G S +Q ++ I L +DL + TGSGKT +YA+P
Sbjct: 10 EHMG-LDPRLLQAVTDLGWSRPTLIQ----EKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 90 IVQTLSNRAV------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
++Q+L ++ + +R LV++PT++LA Q + + +A V +A S+ D
Sbjct: 65 MLQSLLHKKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDVRVA-NVSAAED 123
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
S+ VL E D++V TP R++ H+ + L LVV
Sbjct: 124 SASQ---------------RAVLMEKP---DVVVGTPSRVLSHLQQNTLKLRDSLELLVV 165
Query: 204 DETDRLLREAYQAWLPTVL 222
DE D L ++ L ++L
Sbjct: 166 DEADLLFSFGFEDELKSLL 184
Score = 145 (56.1 bits), Expect = 4.9e-25, Sum P(3) = 4.9e-25
Identities = 42/142 (29%), Positives = 76/142 (53%)
Query: 265 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 322
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 188 PRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 323 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381
L ALL+ SL K ++F +++E +RL L F I +G R + F
Sbjct: 248 LYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFS---IPSCVLNGELPLRSRCHIISQF 304
Query: 382 REGKIQVLVSSDAMTRGMDVEG 403
+G ++++DA G V+G
Sbjct: 305 NQGLYDCVIATDAEILGPQVKG 326
Score = 108 (43.1 bits), Expect = 4.9e-25, Sum P(3) = 4.9e-25
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLL 454
+ RG+D V+ V+N+D P + Y+HRAGRTARA G T + E +G + LL
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPAEQPFLGKIEDLL 404
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 217 (81.4 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 57/181 (31%), Positives = 97/181 (53%)
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK-PL 321
PY + ++ SATL Q +LA ++ P + + ER+E K K PL
Sbjct: 178 PYDKRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTA-ERVEQVLYHVGRKEKFPL 236
Query: 322 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381
L+ LL+ G E+ ++F ++ L LN + ++ SG Q R K L+ F
Sbjct: 237 -LLGLLRKEGMERTMIFVNTKREAEFLDERLNA-NDFPCRV--ISGDVEQRKRLKILEDF 292
Query: 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441
+ GK+ +++++D +RG+ ++GV++V+NYD P + Y+HR GRTARAG G+ ++ +
Sbjct: 293 KSGKLPIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADE 352
Query: 442 D 442
D
Sbjct: 353 D 353
Score = 91 (37.1 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 19/55 (34%), Positives = 35/55 (63%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
L+ D++V TPGRL+D++ + ++L+ + LV+DE DR+ + A L +L+
Sbjct: 121 LKEGADVVVGTPGRLIDYLKQ-KVYSLKEIEMLVIDEADRMFDMGFIADLRFILR 174
Score = 83 (34.3 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 26/107 (24%), Positives = 52/107 (48%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L ++ + + G S P+Q ++T+ L +D+ + TG+GKT ++ + + L
Sbjct: 8 LPEQVMQGVADAGFSDCTPIQ----EKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTKL 63
Query: 95 --SNRAV--RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
S R R RA+++ PTR+L +Q++ + G ++ G
Sbjct: 64 LRSGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYG 110
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 214 (80.4 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 66/202 (32%), Positives = 102/202 (50%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL------TTGETRYKLPERLE 308
+ER F P+ R + SAT+ + ++ L P + T ET + +
Sbjct: 168 IERIFSLTPFTRQT-LFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFK 226
Query: 309 SYKLICESKLKPLYLVALLQSLGEEKC---IVFTSSVESTHRLCTLLNHFGELRIKIKEY 365
+ E+ K L AL+ + GE KC I+F + + L +G I +
Sbjct: 227 GSRRDREASEKRAVLRALIDAEGE-KCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPI--H 283
Query: 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 425
L QS R++TL FREGK+++LV+SD RG+DV V++V N+D P + + Y+HR GR
Sbjct: 284 GDLD-QSQRTRTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGR 342
Query: 426 TARAGQLGRCFTL-LHKDEVCL 446
T RAG+ G+ TL + +DE L
Sbjct: 343 TGRAGRDGKAITLCIPRDEKAL 364
Score = 141 (54.7 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 41/119 (34%), Positives = 64/119 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+P++ A++ G + P+Q I P L RD+ + TG+GKT S+ LP++ L
Sbjct: 9 LNPKVLKAIEEAGYETPTPIQAGA----IPPALEGRDVLGIAQTGTGKTASFTLPMITLL 64
Query: 95 SN-RA-VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ RA R R+LV+ PTR+LA QV + F + L+ L +G S ++ LI R
Sbjct: 65 ARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQ-DALIDR 122
Score = 116 (45.9 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 41/155 (26%), Positives = 66/155 (42%)
Query: 88 LPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147
L I QT + + ++ L R A + P L+ +A + +
Sbjct: 43 LGIAQTGTGKTASFTLPMITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLK- 101
Query: 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDET 206
+ + L G+ + +D L + VD+L+ATPGRL+DH RG L + +VVDE
Sbjct: 102 -LTKALLIGGVSFKEQDAL--IDRGVDVLIATPGRLLDHFE--RGKLLLTGVQIMVVDEA 156
Query: 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241
DR+L + + + LT + F A T P
Sbjct: 157 DRMLDMGFIPDIERIFSLTPFTRQTLFFSA-TMAP 190
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 197 (74.4 bits), Expect = 7.7e-25, Sum P(3) = 7.7e-25
Identities = 55/194 (28%), Positives = 95/194 (48%)
Query: 258 GFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 310
GFK++ Y P ++LSAT+ D ++ + +P+ + + L + Y
Sbjct: 179 GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFY 238
Query: 311 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370
+ E + K L L S+ + ++F ++ L T L + + + YS L +
Sbjct: 239 VNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN-DKFTVSAI-YSDLPQ 296
Query: 371 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430
Q R +K FR G ++L+S+D + RG+DV+ V+ V+NYD PA + YIHR GR R G
Sbjct: 297 QE-RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG 355
Query: 431 QLGRCFTLLHKDEV 444
+ G + ++V
Sbjct: 356 RKGVAINFVTNEDV 369
Score = 118 (46.6 bits), Expect = 7.7e-25, Sum P(3) = 7.7e-25
Identities = 27/92 (29%), Positives = 54/92 (58%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++++ +Q + +V+ +AL++ PTR+LALQ
Sbjct: 47 AIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQ 105
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
++ V A+A + + V +G +S ++ L
Sbjct: 106 IQKVVMALAFHMDIKVHACIGGTSFVEDAEGL 137
Score = 74 (31.1 bits), Expect = 7.7e-25, Sum P(3) = 7.7e-25
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED + L+ A I+V TPGR+ D+I R F + + ++DE D +L ++ + +
Sbjct: 132 EDA-EGLRDA-QIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIF 188
Query: 223 QL 224
L
Sbjct: 189 TL 190
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 197 (74.4 bits), Expect = 7.7e-25, Sum P(3) = 7.7e-25
Identities = 55/194 (28%), Positives = 95/194 (48%)
Query: 258 GFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 310
GFK++ Y P ++LSAT+ D ++ + +P+ + + L + Y
Sbjct: 179 GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFY 238
Query: 311 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370
+ E + K L L S+ + ++F ++ L T L + + + YS L +
Sbjct: 239 VNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN-DKFTVSAI-YSDLPQ 296
Query: 371 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430
Q R +K FR G ++L+S+D + RG+DV+ V+ V+NYD PA + YIHR GR R G
Sbjct: 297 QE-RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG 355
Query: 431 QLGRCFTLLHKDEV 444
+ G + ++V
Sbjct: 356 RKGVAINFVTNEDV 369
Score = 118 (46.6 bits), Expect = 7.7e-25, Sum P(3) = 7.7e-25
Identities = 27/92 (29%), Positives = 54/92 (58%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++++ +Q + +V+ +AL++ PTR+LALQ
Sbjct: 47 AIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQ 105
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
++ V A+A + + V +G +S ++ L
Sbjct: 106 IQKVVMALAFHMDIKVHACIGGTSFVEDAEGL 137
Score = 74 (31.1 bits), Expect = 7.7e-25, Sum P(3) = 7.7e-25
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED + L+ A I+V TPGR+ D+I R F + + ++DE D +L ++ + +
Sbjct: 132 EDA-EGLRDA-QIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIF 188
Query: 223 QL 224
L
Sbjct: 189 TL 190
>UNIPROTKB|Q3SZ40 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P60842 EMBL:BC103169
IPI:IPI00695179 RefSeq:NP_001029501.1 UniGene:Bt.48952
ProteinModelPortal:Q3SZ40 STRING:Q3SZ40 PRIDE:Q3SZ40
Ensembl:ENSBTAT00000014014 GeneID:508728 KEGG:bta:508728 CTD:54606
HOVERGEN:HBG051334 InParanoid:Q3SZ40 OrthoDB:EOG47H5PT
NextBio:20868656 Uniprot:Q3SZ40
Length = 546
Score = 153 (58.9 bits), Expect = 7.9e-25, Sum P(3) = 7.9e-25
Identities = 58/204 (28%), Positives = 98/204 (48%)
Query: 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
E +H+ LD RL A+ ++G S +Q ++ I L +DL + TGSGKT
Sbjct: 5 ESLGFEHMG-LDHRLLQAVTDLGWSRPTLIQ----EKAIPLALEGKDLLARARTGSGKTA 59
Query: 85 SYALPIVQTLSNRAV------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138
+YA+P++Q L +R + +RALV++PT++LA Q + + +A + +A
Sbjct: 60 AYAIPMLQLLLHRKATGPVVEQAVRALVLVPTKELARQAQSMIQQLAAYCARDIRVA-NV 118
Query: 139 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL 198
S+ D S+ VL E D++V TP R+++H+ + +
Sbjct: 119 SAAEDSASQ---------------RAVLMEKP---DVVVGTPSRILNHLQQDNLKLRDSM 160
Query: 199 CYLVVDETDRLLREAYQAWLPTVL 222
LVVDE D L ++ L ++L
Sbjct: 161 ELLVVDEADLLFSFGFEEELKSLL 184
Score = 147 (56.8 bits), Expect = 7.9e-25, Sum P(3) = 7.9e-25
Identities = 42/142 (29%), Positives = 77/142 (54%)
Query: 265 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 322
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 188 PRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 323 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381
L ALL+ SL K ++F +++E ++RL L F I +G R + F
Sbjct: 248 LYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFS---IPACVLNGELPLRSRCHIISQF 304
Query: 382 REGKIQVLVSSDAMTRGMDVEG 403
+G ++++DA G V+G
Sbjct: 305 NQGFYDCVIATDAEVLGPPVKG 326
Score = 104 (41.7 bits), Expect = 7.9e-25, Sum P(3) = 7.9e-25
Identities = 25/60 (41%), Positives = 33/60 (55%)
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLL 454
+ RG+D V V+N+D P + YIHRAGRTARA G T + E +G + LL
Sbjct: 345 VARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGKIEELL 404
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 210 (79.0 bits), Expect = 1.0e-24, Sum P(3) = 1.0e-24
Identities = 61/192 (31%), Positives = 92/192 (47%)
Query: 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG- 331
SAT D + +L+L + ++ G R E +E L S+ L + L G
Sbjct: 347 SATFAHDVEEWCKLNLDSIVLVSVG-ARNSAAETVEQELLFVGSETGKLTAMRELVKKGF 405
Query: 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391
+VF S+E L L + G + + + Q+Q R + +FR GKI VL+
Sbjct: 406 APPVLVFVQSIERAKELFHELIYEG-INVDVIHADKTQQQ--RDNVVHSFRAGKIWVLIC 462
Query: 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLT 451
+ + RG+D +GVN V+NYD P YIHR GRT RAG G+ T +D+
Sbjct: 463 TALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFTEDD-------K 515
Query: 452 PLLLCTSDILQR 463
PLL ++++QR
Sbjct: 516 PLLRSIANVIQR 527
Score = 127 (49.8 bits), Expect = 1.0e-24, Sum P(3) = 1.0e-24
Identities = 34/125 (27%), Positives = 61/125 (48%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P ++ F+ ++ + P++ +Q G P+Q+ + I L R+L ++P
Sbjct: 151 PDPIATFDQLQKEYK--IHPKVIENIQAAGFQVPTPIQM----QAIPVMLHGRELLASAP 204
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
TGSGKTL++ +P++ L + RAL++ PTR+LA Q +A G + +
Sbjct: 205 TGSGKTLAFCIPLLTHLKQPMNKGFRALIISPTRELASQTHRELVKLADGTGFRIHMIQK 264
Query: 138 QSSIA 142
S A
Sbjct: 265 ASEAA 269
Score = 61 (26.5 bits), Expect = 1.0e-24, Sum P(3) = 1.0e-24
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE 212
DILV TP RL+ + L + +LVVDE+D+L +
Sbjct: 281 DILVTTPNRLIYLLKQDPPAIDLTSVEWLVVDESDKLFED 320
>UNIPROTKB|F6XWM4 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969
Ensembl:ENSCAFT00000035837 EMBL:AAEX03014637 OMA:DADNVFA
Uniprot:F6XWM4
Length = 734
Score = 208 (78.3 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 66/213 (30%), Positives = 102/213 (47%)
Query: 271 VLSATLTQDPNKLAQLDLHHPLFLTTGE------TRYKLPERLESYKLICESKLKPLYLV 324
+ SAT TQ+ L + L +P+ ++ E + K P RLE+Y ++C++ K LV
Sbjct: 335 LFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKFNQLV 394
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
L++ +EK ++F S+ L + +KI G + R+K FR+
Sbjct: 395 HFLRNHKQEKHLIFFSTCACVEYYGKALEALVK-SVKIMCIHGKMKHK-RNKIFMEFRKL 452
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+ +LV +D M RG+D+ VN V+ YD P+ ++HR GRTAR G G L E
Sbjct: 453 QSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLPMEE 512
Query: 445 CLVGCLTPLLLCTSDILQRKTRLQKSKSRLRHK 477
V L C LQ + +LQK+ L K
Sbjct: 513 SYVTFLEINQKCP---LQ-EMKLQKNTGDLLPK 541
Score = 153 (58.9 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 57/172 (33%), Positives = 86/172 (50%)
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLALQVKDVFAAIAPAVG-LSV 132
TGSGKTL++ +PI++ L R + + A+++ PTR+LA+QV +V A + S
Sbjct: 190 TGSGKTLAFVIPILEILLRREEKLKKNQVGAIIITPTRELAIQVDEVLAHFTKSFPQFSQ 249
Query: 133 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-TR 191
L +G + AD++S R K + G +I+VATPGRL D
Sbjct: 250 ILWIGGRNPADDVS----RFKEQGG----------------NIIVATPGRLEDMFRRKVE 289
Query: 192 GFTL----EHLCYLVVDETDRLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
G L + L LV+DE DRLL ++A + T+L+ L + FS T
Sbjct: 290 GLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQT 341
Score = 37 (18.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411
++ LK F++GKI + + +G+ G V D
Sbjct: 692 TRLLKKFKKGKI----TEEEFEKGLFSSGKGTVTTAD 724
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 161 (61.7 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 53/198 (26%), Positives = 95/198 (47%)
Query: 256 ERGFKD------KPYPRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308
E GF+D K P + +L SATL + A+ L P+ + + K+ ++L
Sbjct: 181 EMGFQDQLTETLKRIPESRQTLLFSATLPKMLVDFAKAGLTDPMLVRL-DVDEKVSDKLS 239
Query: 309 SYKLICESKLKPLYLVALLQSLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366
+C K L+ L + + E + +VF ++++ + +L+ G + YS
Sbjct: 240 MVFCMCRPDEKLFALLHLCRRMDRENKQTVVFCATMKHVEYVVGILHRAG-IDCSFV-YS 297
Query: 367 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426
L + R ++ F E + +LV +D RG+D+ ++ V+N P K ++HR GR
Sbjct: 298 QLDA-TARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRV 356
Query: 427 ARAGQLGRCFTLLHKDEV 444
ARAG+ G +L+ DE+
Sbjct: 357 ARAGRSGTAISLIANDEL 374
Score = 154 (59.3 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 40/121 (33%), Positives = 65/121 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
LD + A++ G + P+Q ++TI P + + +D+ S TGSGKT ++ +P++Q
Sbjct: 31 LDHSVYKAIEKKGFNQPTPIQ----RKTI-PCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
L R +RAL+V PTR+LALQ V + GL VG I ++ S + + P
Sbjct: 86 LKRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPD 145
Query: 154 L 154
+
Sbjct: 146 I 146
Score = 95 (38.5 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
E+ + DIL+ATPGRL+ H+ L ++ Y+V DE DRL +Q L L
Sbjct: 134 EEQFSTIHENPDILLATPGRLL-HVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETL 192
Query: 223 Q 223
+
Sbjct: 193 K 193
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 236 (88.1 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 85/288 (29%), Positives = 132/288 (45%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED +L DI++ATPGRLM H+ T G +L + Y+V DE DRL + L +L
Sbjct: 341 EDQFTDLARNPDIIIATPGRLMHHLLET-GMSLSKVQYIVFDEADRLFEMGFNEQLTEIL 399
Query: 223 QLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282
S+N ++T LPS L R G+ P+L+ + ++++ +
Sbjct: 400 SKL-SENRQTLLFSAT-LPSL---LVDFVRAGLNN-------PKLINLDTDTKISENLS- 446
Query: 283 LAQLDLHHP------LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCI 336
L+ L H LFL + YK P+ L + + + + Q + I
Sbjct: 447 LSFFTLRHEEKLGVLLFLLK-DIIYKKPQ-LPTTETTTTTTTNN---ESNQQQQKKSSTI 501
Query: 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
+F S+ + LL G I Y R L FR ++ V+V +D
Sbjct: 502 IFVSTKYHVEFIHILLERAGIASTYIHGYLD---PVARKINLAKFRSHQVGVMVVTDLAA 558
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
RG+D+ ++NV+N+D P K +IHR GR ARAG+ G ++L+ DEV
Sbjct: 559 RGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAYSLVSPDEV 606
Score = 127 (49.8 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 31/104 (29%), Positives = 57/104 (54%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 110
F V + +++I L D+ + TGSGKT ++ +P++Q L + + +RA+++ PT
Sbjct: 250 FNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTVGVRAVILSPT 309
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R+LA+Q V + L L VG S+ D+ ++L + P +
Sbjct: 310 RELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARNPDI 353
Score = 42 (19.8 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 313 ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE 357
+ ES+ K LYL +LG E S +++ RL L + E
Sbjct: 757 VIESQQKKLYLQQSETNLGPENEEFDYSKLDTRKRLLQLTENITE 801
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 187 (70.9 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 53/178 (29%), Positives = 90/178 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATL + + A+ L P+ + + KL E+L++ + K L+ LL +
Sbjct: 275 VLFSATLPKLLVEFARAGLTEPVLIRL-DVDTKLNEQLKTSFFLVREDTKAAVLLHLLHN 333
Query: 330 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE-YSGLQRQSVRSKTLKAFREGKI 386
+ +++ +VF ++ L LL R+ YS L + R L F GK
Sbjct: 334 VVRPQDQTVVFVATKHHAEYLTELLT---TQRVSCAHIYSALD-PTARKINLAKFTLGKC 389
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
L+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DE+
Sbjct: 390 STLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEI 447
Score = 126 (49.4 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 31/104 (29%), Positives = 53/104 (50%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 110
+ V + ++TI L +D+ + TGSGKT + LP+ + L + + RAL++ PT
Sbjct: 116 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPT 175
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R+LALQ + GL L +G + D+ + L + P +
Sbjct: 176 RELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDI 219
Score = 94 (38.1 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED L DI++ATPGRL+ H+ L+ + Y+V DE DRL + L ++
Sbjct: 207 EDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEII 265
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 211 (79.3 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 60/207 (28%), Positives = 105/207 (50%)
Query: 255 VERGFKDK-----PY-PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
++ GFK++ Y P+ + +L SAT D K+++ L P + E + K + +
Sbjct: 163 LDMGFKEEIDQITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDE-KNKAADDV 221
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
E ++ K L+ S ++ +VFT + + L + G +K G
Sbjct: 222 EQLVYGVDADRKRELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDG---VKSLAIHG 278
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
+ Q R K L F+EGK++ L+++D RG+D++G+++V+NY+ P + Y+HR GRTA
Sbjct: 279 DKSQGAREKALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTA 338
Query: 428 RAGQLGRCFTLLHKDEVCLVGCLTPLL 454
RAG G +L+ E L+ + LL
Sbjct: 339 RAGNSGLAVSLVSPGEEWLLTAIEELL 365
Score = 138 (53.6 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 37/102 (36%), Positives = 57/102 (55%)
Query: 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC---LRALV 106
S + + +++I L + D+ + TG+GKT ++ALPI+Q L + C LRALV
Sbjct: 23 SAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLIS-VQPCKPELRALV 81
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ PTR+LA QV F +++G+A G S +ISEL
Sbjct: 82 LTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISEL 123
Score = 110 (43.8 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 33/98 (33%), Positives = 51/98 (52%)
Query: 157 GICY---DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
GI Y + + EL+ VDIL+ATPGRL+D + T +L ++ LV DE DR+L
Sbjct: 108 GIAYGGVSTKKQISELKVGVDILIATPGRLLDLLR-TESVSLSNIETLVFDEADRMLDMG 166
Query: 214 YQAWLPTVLQ-LTRSDNENRFSDASTFLPSAFGSLKTI 250
++ + + Q L ++ FS +TF + K I
Sbjct: 167 FKEEIDQITQYLPKTKQTLLFS--ATFADDIYKMSKNI 202
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 211 (79.3 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 60/207 (28%), Positives = 105/207 (50%)
Query: 255 VERGFKDK-----PY-PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
++ GFK++ Y P+ + +L SAT D K+++ L P + E + K + +
Sbjct: 163 LDMGFKEEIDQITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDE-KNKAADDV 221
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
E ++ K L+ S ++ +VFT + + L + G +K G
Sbjct: 222 EQLVYGVDADRKRELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDG---VKSLAIHG 278
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
+ Q R K L F+EGK++ L+++D RG+D++G+++V+NY+ P + Y+HR GRTA
Sbjct: 279 DKSQGAREKALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTA 338
Query: 428 RAGQLGRCFTLLHKDEVCLVGCLTPLL 454
RAG G +L+ E L+ + LL
Sbjct: 339 RAGNSGLAVSLVSPGEEWLLTAIEELL 365
Score = 138 (53.6 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 37/102 (36%), Positives = 57/102 (55%)
Query: 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC---LRALV 106
S + + +++I L + D+ + TG+GKT ++ALPI+Q L + C LRALV
Sbjct: 23 SAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLIS-VQPCKPELRALV 81
Query: 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ PTR+LA QV F +++G+A G S +ISEL
Sbjct: 82 LTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISEL 123
Score = 110 (43.8 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 33/98 (33%), Positives = 51/98 (52%)
Query: 157 GICY---DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213
GI Y + + EL+ VDIL+ATPGRL+D + T +L ++ LV DE DR+L
Sbjct: 108 GIAYGGVSTKKQISELKVGVDILIATPGRLLDLLR-TESVSLSNIETLVFDEADRMLDMG 166
Query: 214 YQAWLPTVLQ-LTRSDNENRFSDASTFLPSAFGSLKTI 250
++ + + Q L ++ FS +TF + K I
Sbjct: 167 FKEEIDQITQYLPKTKQTLLFS--ATFADDIYKMSKNI 202
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 221 (82.9 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 58/178 (32%), Positives = 93/178 (52%)
Query: 270 MVLSATLTQDPNKLAQLDLHH-PLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALL 327
M+ SAT T+ + +A++ L++ P+++ + R E LE ++C S+ + L L L
Sbjct: 301 MLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSERRFLLLYTFL 360
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ +K IVF SS + LLN+ + I + E G Q+Q R+ T F +
Sbjct: 361 KKNLSKKIIVFLSSCNAVKYTAELLNY---IDIPVLELHGRQKQQKRTNTFYEFVNAEKG 417
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQLGRCFTLLHKDEV 444
+L+ +D RG+D+ V+ ++ YD P K YIHR GRTAR G+ GR L E+
Sbjct: 418 ILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKEL 475
Score = 134 (52.2 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 25/67 (37%), Positives = 44/67 (65%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G PE+ + L+ V++LVATPGRL+DH+ T+GF ++L L++DE DR+L ++
Sbjct: 228 GASKKPEE--ERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEE 285
Query: 217 WLPTVLQ 223
+ +++
Sbjct: 286 EMHQIIK 292
Score = 131 (51.2 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 44/150 (29%), Positives = 75/150 (50%)
Query: 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
E +LP ++ K +++ MG + P+Q ++I P L +DL + TGSGKTL
Sbjct: 117 ESIEFSNLP-IEENTKKSIEEMGFKKMTPIQA----KSILPLLEGKDLLGAARTGSGKTL 171
Query: 85 SYALPIVQTL--SNRAVRCLRALVVL-PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
++ +P ++ L SN R ++++ PTR+LALQ+ V + + G+ +G +S
Sbjct: 172 AFLIPAIEVLVKSNFKPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASK 231
Query: 142 ADEISELIKRPKLEAGICYDPEDVLQELQS 171
E L K L + P +L LQ+
Sbjct: 232 KPEEERLEKGVNL---LVATPGRLLDHLQN 258
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 183 (69.5 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 328
M+ SAT + +L+ L+ P ++ E T E+L Y++ + + K L L+
Sbjct: 181 MLFSATYSDAVKQLSHKMLNQPQWVNVAENTTASTVEQLV-YRV--DKRRKAELLSELVG 237
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ +VF S+ E L L G I + G + Q R++ L F+ GK++V
Sbjct: 238 RNNWRQVLVFASTKECAEHLLQELTLDG---ISAGVFHGDKTQGARNRVLDDFKAGKLRV 294
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
LV++D RG+D++ + V+N + P + Y+HR GRT RAG GR + +
Sbjct: 295 LVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFV 345
Score = 119 (46.9 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 34/90 (37%), Positives = 50/90 (55%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
D L P L A+ G L VQ Q+ I L +D+ + TG+GKT ++ALP
Sbjct: 4 DTLGLSSPLLN-AITECGYQQLTQVQ----QQVIPLALVGKDIMACAQTGTGKTAAFALP 58
Query: 90 IVQTLSNRAVR--CLRALVVLPTRDLALQV 117
+++ L+ + LRALV+ PTR+LA+QV
Sbjct: 59 VLEQLAAKPADKPLLRALVMTPTRELAIQV 88
Score = 90 (36.7 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
++ VDILVATPGRL D I L + LV+DE DR+L
Sbjct: 119 VEQGVDILVATPGRLFDIIGQFN-LDLSSVTTLVIDEADRML 159
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 183 (69.5 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 51/171 (29%), Positives = 86/171 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 328
M+ SAT + +L+ L+ P ++ E T E+L Y++ + + K L L+
Sbjct: 181 MLFSATYSDAVKQLSHKMLNQPQWVNVAENTTASTVEQLV-YRV--DKRRKAELLSELVG 237
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ +VF S+ E L L G I + G + Q R++ L F+ GK++V
Sbjct: 238 RNNWRQVLVFASTKECAEHLLQELTLDG---ISAGVFHGDKTQGARNRVLDDFKAGKLRV 294
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
LV++D RG+D++ + V+N + P + Y+HR GRT RAG GR + +
Sbjct: 295 LVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFV 345
Score = 119 (46.9 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 34/90 (37%), Positives = 50/90 (55%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
D L P L A+ G L VQ Q+ I L +D+ + TG+GKT ++ALP
Sbjct: 4 DTLGLSSPLLN-AITECGYQQLTQVQ----QQVIPLALVGKDIMACAQTGTGKTAAFALP 58
Query: 90 IVQTLSNRAVR--CLRALVVLPTRDLALQV 117
+++ L+ + LRALV+ PTR+LA+QV
Sbjct: 59 VLEQLAAKPADKPLLRALVMTPTRELAIQV 88
Score = 90 (36.7 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
++ VDILVATPGRL D I L + LV+DE DR+L
Sbjct: 119 VEQGVDILVATPGRLFDIIGQFN-LDLSSVTTLVIDEADRML 159
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 197 (74.4 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 48/175 (27%), Positives = 88/175 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
+++SAT +LA+ L +P+ + G + + Y + Y+ QS
Sbjct: 235 VMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAVSGVVLKYLQFDKDIFTWKYMQVNAQS 294
Query: 330 LGEEKCIVFTSSVESTHRLCT-LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ +VF H + + + G + ++ G + Q R + L F++GK+++
Sbjct: 295 FCTDVVVVFVQ----LHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRI 350
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
LV++D +RG+DV + +V N+D P I+ Y+HR GRT RAG+ G+ TL+ K +
Sbjct: 351 LVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKD 405
Score = 102 (41.0 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 220
D + + + VDI++ATPGRL D + L+ + YLV+DE DR+L ++ +
Sbjct: 165 DRKAQINVVTKGVDIVIATPGRLND-LQMNNFINLKSITYLVLDEADRMLDMGFEPQIMK 223
Query: 221 VLQLTRSDNENRFSDAS 237
+L R D + A+
Sbjct: 224 ILIDVRPDRQTVMMSAT 240
Score = 90 (36.7 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLS 95
P + ++ G P+Q W I G+ DL + TG+GKTL+Y +P + S
Sbjct: 62 PDIMANIRKTGFQKPTPIQSQAWP-IILQGI---DLIGIAQTGTGKTLAYLMPGFIHLAS 117
Query: 96 NRAVRCLRA----LVVLPTRDLALQVK 118
+ R LV+ PTR+LALQV+
Sbjct: 118 QPIPKDKRGGPGMLVLAPTRELALQVE 144
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 206 (77.6 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 58/200 (29%), Positives = 97/200 (48%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
+ R K P R ++ SAT +++ +L LH P + R R+
Sbjct: 181 IRRILKLLPESRQ-NLLFSATFSKEIKELTDKLLHSPALIEVAR-RNTAAARITHVVHPV 238
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ + K L ++ S + +VFT + +RL L G + G + Q+ R
Sbjct: 239 DRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDG---LSSAAIHGNKSQAAR 295
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
+ L F++GKI+VLV++D RG+D++ + +V+N++ P K Y+HR GRT RA G
Sbjct: 296 MRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGV 355
Query: 435 CFTLLHKDEVCLVGCLTPLL 454
+L+ DEV L+ + LL
Sbjct: 356 AISLVSGDEVRLLRDIEKLL 375
Score = 141 (54.7 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 53/183 (28%), Positives = 84/183 (45%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
V ++ I L RD+ + + TG+GKT + LP++Q R V P L
Sbjct: 36 VQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ----------RLFVSRPP--LQRSA 83
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
K V A+ + + V + A +K + G+ P+ + L+ VDILV
Sbjct: 84 KPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ--INHLRRGVDILV 141
Query: 178 ATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 236
ATPGRL+D +N +G L + + V+DE DR+L + + +L+L +N A
Sbjct: 142 ATPGRLLDLVN--QGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSA 199
Query: 237 STF 239
TF
Sbjct: 200 -TF 201
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 206 (77.6 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 58/200 (29%), Positives = 97/200 (48%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC 314
+ R K P R ++ SAT +++ +L LH P + R R+
Sbjct: 181 IRRILKLLPESRQ-NLLFSATFSKEIKELTDKLLHSPALIEVAR-RNTAAARITHVVHPV 238
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ + K L ++ S + +VFT + +RL L G + G + Q+ R
Sbjct: 239 DRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDG---LSSAAIHGNKSQAAR 295
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
+ L F++GKI+VLV++D RG+D++ + +V+N++ P K Y+HR GRT RA G
Sbjct: 296 MRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGV 355
Query: 435 CFTLLHKDEVCLVGCLTPLL 454
+L+ DEV L+ + LL
Sbjct: 356 AISLVSGDEVRLLRDIEKLL 375
Score = 141 (54.7 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 53/183 (28%), Positives = 84/183 (45%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
V ++ I L RD+ + + TG+GKT + LP++Q R V P L
Sbjct: 36 VQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ----------RLFVSRPP--LQRSA 83
Query: 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177
K V A+ + + V + A +K + G+ P+ + L+ VDILV
Sbjct: 84 KPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ--INHLRRGVDILV 141
Query: 178 ATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA 236
ATPGRL+D +N +G L + + V+DE DR+L + + +L+L +N A
Sbjct: 142 ATPGRLLDLVN--QGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSA 199
Query: 237 STF 239
TF
Sbjct: 200 -TF 201
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 192 (72.6 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 53/174 (30%), Positives = 83/174 (47%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT ++ LA+ L P G T K + + I + K L+ LL+
Sbjct: 347 LLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQ 406
Query: 330 LGE-EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
L + K ++F + ++ L G + I G + QS R + L F+ G+ +
Sbjct: 407 LMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIH---GDKTQSERDRVLAEFKSGRSPI 463
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
+ ++D RG+DV+ + VVNYD P ++ YIHR GRT RAG G FT D
Sbjct: 464 MTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHD 517
Score = 108 (43.1 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+++L+ V+I++ATPGRL+D + L+ + YLV+DE DR+L ++ + ++
Sbjct: 282 IRDLRRGVEIVIATPGRLIDMLECQHT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVSQI 340
Query: 226 RSDNE 230
R D +
Sbjct: 341 RPDRQ 345
Score = 95 (38.5 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 34/107 (31%), Positives = 57/107 (53%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P + +F+D + P D L+ A+ +G + P+Q W + G RDL +
Sbjct: 161 PKPMKMFQDA---NFP--DNILE-AIAKLGFTEPTPIQAQGWPMAL-KG---RDLIGIAE 210
Query: 78 TGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVKD 119
TGSGKTL+Y LP + +S + R + L++ PTR+LA+Q+++
Sbjct: 211 TGSGKTLAYLLPALVHVSAQP-RLGQDDGPIVLILAPTRELAVQIQE 256
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 213 (80.0 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 57/172 (33%), Positives = 90/172 (52%)
Query: 270 MVLSATLTQDPNKLAQLDLHH-PLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALL 327
M+ SAT T LA++ L PLF+ ET + LE ++C+S + L L + L
Sbjct: 225 MLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFL 284
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ ++K IVF SS S LLN+ + + + E G Q+Q R+ T F +
Sbjct: 285 KRNQKKKIIVFLSSCNSVKYYAELLNY---IDLPVLELHGKQKQQKRTNTFFEFCNAERG 341
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+L+ +D RG+D+ V+ ++ +D P + YIHR GRTAR G G+ +L+
Sbjct: 342 ILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTAR-GTKGKGKSLM 392
Score = 137 (53.3 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 48/173 (27%), Positives = 81/173 (46%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
E++ K P V FE+ L P LK A++ MG +++ VQ
Sbjct: 22 EKSTSKQNNAAPEGEQTTCVEKFEELKLSQ-----PTLK-AIEKMGFTTMTSVQA----R 71
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQVK 118
TI P L RD+ + TGSGKTL++ +P ++ L + + +V+ PTR+LALQ+
Sbjct: 72 TIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTGIIVITPTRELALQIF 131
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
V + + G+ +G ++ E +L+K + + P +L LQ+
Sbjct: 132 GVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVNM---LIATPGRLLDHLQN 181
Score = 134 (52.2 bits), Expect = 6.9e-24, Sum P(2) = 6.9e-24
Identities = 25/68 (36%), Positives = 46/68 (67%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
++L V++L+ATPGRL+DH+ T+GF ++L L++DE DR+L ++ + ++++
Sbjct: 159 EKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKIL- 217
Query: 227 SDNENRFS 234
NE+R S
Sbjct: 218 -PNEDRQS 224
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 220 (82.5 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 48/175 (27%), Positives = 93/175 (53%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
+++SAT +LA+ L +P+ + G +E ++ + K ++ + S
Sbjct: 421 VMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEKKAFMENFIDS 480
Query: 330 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ ++K I+F + + + L G + ++ G + Q R + L F++GK+++
Sbjct: 481 MKPKDKAIIFVGKKSTADDIASDLGVQG---VPVQSLHGDREQCDREQALDDFKKGKVRI 537
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
LV++D +RG+DV + +V N+D P I+ Y+HR GRT RAG+ G+ TL+ K +
Sbjct: 538 LVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKD 592
Score = 90 (36.7 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLS 95
P + ++ G P+Q W I G+ DL + TG+GKTL+Y +P + S
Sbjct: 249 PDIMANIRKTGFQKPTPIQSQAWP-IILQGI---DLIGIAQTGTGKTLAYLMPGFIHLAS 304
Query: 96 NRAVRCLRA----LVVLPTRDLALQVK 118
+ R LV+ PTR+LALQV+
Sbjct: 305 QPIPKDKRGGPGMLVLAPTRELALQVE 331
Score = 83 (34.3 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT 220
D + + + VDI++ATPGRL D + L+ + YL +E DR+L ++ +
Sbjct: 352 DRKAQINVVTKGVDIVIATPGRLND-LQMNNFINLKSITYLA-NEADRMLDMGFEPQIMK 409
Query: 221 VLQLTRSDNENRFSDAS 237
+L R D + A+
Sbjct: 410 ILIDVRPDRQTVMMSAT 426
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 233 (87.1 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 80/275 (29%), Positives = 123/275 (44%)
Query: 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 233
DI++ATPGR + H+ L + Y+V DE DRL + A L +L S +
Sbjct: 213 DIVIATPGRFL-HLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPSTRQTLL 271
Query: 234 SDASTFLPSAFGSLKTIRRCG------VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 287
A+ LP SL R G V + K P L S + L +
Sbjct: 272 FSAT--LPK---SLVEFARAGLQDPTLVRLDTESKISPDLQNAFFSVKSAEKEGALLYI- 325
Query: 288 LHHPLFLTTGETR--YKLPER-LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344
L+ + + TG T +L E+ E K + + V + +S + IVF ++
Sbjct: 326 LNEVIKMPTGPTEASLRLKEKGPEDSKNKKRKRAEMERAVNMKESPTKHSTIVFAATKHH 385
Query: 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404
L +LL G + G Q+ R ++ FR G +LV +D RG+D+ +
Sbjct: 386 VDYLYSLLREAG---FAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAARGIDIPIL 442
Query: 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
NV+NYD P+ K ++HR GRTARAG+ G ++L+
Sbjct: 443 ANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLV 477
Score = 124 (48.7 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 33/121 (27%), Positives = 62/121 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L+ L A+ G S P+Q ++TI + ++D+ + TGSGKT ++ +P+++ L
Sbjct: 98 LNANLLKAIARKGFSVPTPIQ----RKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEKL 153
Query: 95 SNRAVRC-LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPK 153
+ + + R L++ P+R+LALQ V + L L VG S+ ++ + P
Sbjct: 154 KSHSTKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGNPD 213
Query: 154 L 154
+
Sbjct: 214 I 214
>UNIPROTKB|G3V0G3 [details] [associations]
symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
EMBL:CH471128 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC004938
UniGene:Hs.654762 HGNC:HGNC:18193 ProteinModelPortal:G3V0G3
SMR:G3V0G3 Ensembl:ENST00000421223 ArrayExpress:G3V0G3 Bgee:G3V0G3
Uniprot:G3V0G3
Length = 375
Score = 161 (61.7 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
Identities = 59/199 (29%), Positives = 97/199 (48%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
+H+ LDPRL A+ ++G S +Q ++ I L +DL + TGSGKT +YA+P
Sbjct: 10 EHMG-LDPRLLQAVTDLGWSRPTLIQ----EKAIPLALEGKDLLARARTGSGKTAAYAIP 64
Query: 90 IVQTLSNRAV------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
++Q L +R + +R LV++PT++LA Q + + +A V +A S+ D
Sbjct: 65 MLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVA-NVSAAED 123
Query: 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203
+S+ VL E D++V TP R++ H+ + L LVV
Sbjct: 124 SVSQ---------------RAVLMEKP---DVVVGTPSRILSHLQQDSLKLRDSLELLVV 165
Query: 204 DETDRLLREAYQAWLPTVL 222
DE D L ++ L ++L
Sbjct: 166 DEADLLFSFGFEEELKSLL 184
Score = 148 (57.2 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
Identities = 42/142 (29%), Positives = 77/142 (54%)
Query: 265 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 322
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 188 PRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 247
Query: 323 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381
L ALL+ SL K ++F +++E ++RL L F I +G R + F
Sbjct: 248 LYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFS---IPTCVLNGELPLRSRCHIISQF 304
Query: 382 REGKIQVLVSSDAMTRGMDVEG 403
+G ++++DA G V+G
Sbjct: 305 NQGFYDCVIATDAEVLGAPVKG 326
Score = 78 (32.5 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 425
+ RG+D V+ V+N+D P + YIHRAGR
Sbjct: 345 VARGIDFHHVSAVLNFDLPPTPEAYIHRAGR 375
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 216 (81.1 bits), Expect = 5.3e-24, Sum P(2) = 5.3e-24
Identities = 67/218 (30%), Positives = 104/218 (47%)
Query: 270 MVLSATLTQDPNKLAQLDLHH-PLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALL 327
M+ SAT T LA++ L PL++ + + E LE +ICE+ + L L + L
Sbjct: 311 MLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFL 370
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ ++K IVF SS LLN+ + + + + G Q+Q R+ T F K
Sbjct: 371 KRNLKKKIIVFFSSCNCVKYHAELLNY---IDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 427
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR-AGQLGRCFTLLHKDEVCL 446
VL+ +D RG+D+ V+ ++ +D P + YIHR GRTAR A GR L EV
Sbjct: 428 VLICTDVAARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTARGANGRGRSLMFLQPSEVGF 487
Query: 447 VGCLTP--LLLCTSDILQRK-TRLQKSKSRLRHKNYAL 481
+ L + + D +K +Q +L +NY L
Sbjct: 488 LKYLKEARVPVVEFDFPAKKIVNVQSQLEKLISQNYYL 525
Score = 135 (52.6 bits), Expect = 5.3e-24, Sum P(2) = 5.3e-24
Identities = 55/176 (31%), Positives = 87/176 (49%)
Query: 2 EEAKKKSMPVLPWMRSPVD-VSLFEDCPLDHLPCLDPRLKVALQNM-GISSL-FPVQVAV 58
E++ K ++P LP VD VSL + P D P L ++ + + GI + F +
Sbjct: 102 EDSGKANVPDLP----SVDAVSLPQ--P-DGGPKKFTELGLSEKTLQGIKEMGFETMTEI 154
Query: 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA---LVVLPTRDLAL 115
Q TI P L RD+ + TGSGKTL++ +P ++ LS + +VV PTR+LAL
Sbjct: 155 QQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLSALRFKPRNGTGVIVVSPTRELAL 214
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171
Q+ V + A + G+ +G ++ E +L K L + P +L LQ+
Sbjct: 215 QIFGVARELLTAHSQTYGIVIGGANRRAEAEKLTKGVNL---LIATPGRLLDHLQN 267
Score = 131 (51.2 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
++L V++L+ATPGRL+DH+ T GF ++L LV+DE DR+L ++ + ++++
Sbjct: 245 EKLTKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKIL- 303
Query: 227 SDNENR 232
NE+R
Sbjct: 304 -PNEDR 308
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 182 (69.1 bits), Expect = 5.7e-24, Sum P(3) = 5.7e-24
Identities = 52/191 (27%), Positives = 88/191 (46%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQ 328
++ +AT ++ +LA ++ P+ +T G+ +R+ + K L+ LL+
Sbjct: 332 LMFTATWPKEVRELANNFMNSPVKVTVGDRDELSANKRITQVVEVINKFDKEKKLIQLLR 391
Query: 329 SLG-----EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
+ K ++F + R+ L R + G Q R+ L AF+
Sbjct: 392 KYNANESSDNKILIFALYKKEASRIENFLKRN---RFSVAAIHGDLSQQQRTAALSAFKS 448
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
G+ +L+++D RG+D+ V V+N P I+ Y+HR GRT RAG G TL +DE
Sbjct: 449 GQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDE 508
Query: 444 VCLVGCLTPLL 454
L G L +L
Sbjct: 509 KHLSGALCNIL 519
Score = 111 (44.1 bits), Expect = 5.7e-24, Sum P(3) = 5.7e-24
Identities = 25/70 (35%), Positives = 48/70 (68%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
+D ++++++A +++VATPGRL+D IN L + YLV+DE DR+L + ++ + T++
Sbjct: 264 DDQIRKIKTA-NVVVATPGRLVDLIN-DGAINLGKVNYLVLDEADRMLEKGFEEDIKTII 321
Query: 223 QLTRSDNENR 232
T S++E +
Sbjct: 322 SNT-SNSERQ 330
Score = 100 (40.3 bits), Expect = 5.7e-24, Sum P(3) = 5.7e-24
Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 53 PVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPT 110
P+Q W P L +D+ + TGSGKT ++ +P + + + L L + PT
Sbjct: 178 PIQSVSW-----PFLLSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTLSVLCISPT 232
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
R+LALQ+ D + G++ G S D+I ++
Sbjct: 233 RELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKI 270
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 184 (69.8 bits), Expect = 5.9e-24, Sum P(3) = 5.9e-24
Identities = 48/176 (27%), Positives = 87/176 (49%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVALLQ 328
++ +AT+ +LA L P + T+ E +E + + K L L+
Sbjct: 182 LLFTATMDSAMARLAGRLLREPERIDIAGTK-TTHEHIEQRLHVADDLHHKNRLLRHLIT 240
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ I+F+++ L L G + G Q+ R++T+ A ++G+I++
Sbjct: 241 DESLRRAIIFSATKRDAENLALELKAQGHSAAALH---GDMPQNARNRTIAAMKQGRIRL 297
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
LV++D RG+DV G+++V+N+D P + + Y+HR GRT RAG G + +EV
Sbjct: 298 LVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEV 353
Score = 109 (43.4 bits), Expect = 5.9e-24, Sum P(3) = 5.9e-24
Identities = 35/106 (33%), Positives = 50/106 (47%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L P + A+ G + PVQ A + L DL + TG+GKT ++ LP +Q L
Sbjct: 8 LAPHILKAVAACGYTEPTPVQAAA----VPRALENVDLLATAQTGTGKTAAFVLPALQRL 63
Query: 95 SNRAV---RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
S+ R R LV+ PTR+LA QV D + + G +G
Sbjct: 64 SSPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILG 109
Score = 94 (38.1 bits), Expect = 5.9e-24, Sum P(3) = 5.9e-24
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210
L+ L + VD +VATPGRL+D ++ R L L LV+DE DR+L
Sbjct: 117 LRLLSAPVDFIVATPGRLVDLLDR-RSLDLSRLELLVLDEADRML 160
>UNIPROTKB|J9NU36 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00530000062880 EMBL:AAEX03006506
EMBL:AAEX03006505 Ensembl:ENSCAFT00000049437 Uniprot:J9NU36
Length = 423
Score = 171 (65.3 bits), Expect = 6.4e-24, Sum P(3) = 6.4e-24
Identities = 50/196 (25%), Positives = 93/196 (47%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 205 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 264
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 265 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 321
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 322 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 381
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G ++ +++
Sbjct: 382 RFGRKGVAINMVTEED 397
Score = 134 (52.2 bits), Expect = 6.4e-24, Sum P(3) = 6.4e-24
Identities = 46/164 (28%), Positives = 81/164 (49%)
Query: 1 MEEAKKKSMPVLPWM-RSPVD-----VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPV 54
+++ KKK P LPW R V + E P PC PR + G + P
Sbjct: 18 LKQKKKKEKP-LPWSSRLAVRKRKAWTAEPEPPPSRRGPCGLPRTSPT-EGGGAGPIPPT 75
Query: 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114
+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA
Sbjct: 76 R----QRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELA 130
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
Q++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 131 QQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 174
Score = 82 (33.9 bits), Expect = 6.4e-24, Sum P(3) = 6.4e-24
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 161 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 219
Query: 225 TRSDNE 230
S+ +
Sbjct: 220 LNSNTQ 225
>ZFIN|ZDB-GENE-031030-2 [details] [associations]
symbol:eif4a1a "eukaryotic translation initiation
factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
Uniprot:Q802C9
Length = 406
Score = 180 (68.4 bits), Expect = 7.0e-24, Sum P(3) = 7.0e-24
Identities = 51/196 (26%), Positives = 93/196 (47%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ Q+ ++ + P+ + + L
Sbjct: 188 LSRGFKDQIYEIFQKLATDTQVILLSATMPQEVLEVTTKFMRDPVRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + + K L L ++L + ++F + + ++ L + G
Sbjct: 248 QFYINVEKEEWKLDTLCDLYETLTITQAVIF---INTRRKVDWLTEKMHARDFTVSALHG 304
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R +K FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMEQKERDVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G ++ +D+
Sbjct: 365 RFGRKGVAINMITEDD 380
Score = 125 (49.1 bits), Expect = 7.0e-24, Sum P(3) = 7.0e-24
Identities = 32/114 (28%), Positives = 64/114 (56%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D L+ AL GI + F A+ Q I P + D+ + +G+GKT ++A+ I+Q +
Sbjct: 36 DMNLREALLR-GIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI 94
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
++ +A+V+ PTR+LA Q++ V A+ +G + +G +++ +++ +L
Sbjct: 95 DVE-LKATQAMVLAPTRELAQQIQKVVLALGDYMGATCHACIGGTNVRNDVQKL 147
Score = 79 (32.9 bits), Expect = 7.0e-24, Sum P(3) = 7.0e-24
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 166 LQELQSAVD-ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ+ V I+V TPGR+ D +N R + +++ +DE D +L ++ + + Q
Sbjct: 144 VQKLQADVPHIVVGTPGRVFDMLNR-RYLSPKYIKMFALDEADEMLSRGFKDQIYEIFQK 202
Query: 225 TRSDNE 230
+D +
Sbjct: 203 LATDTQ 208
>FB|FBgn0034496 [details] [associations]
symbol:CG9143 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14805 GeneTree:ENSGT00550000074847
OMA:DAYLYYI EMBL:BT010296 RefSeq:NP_611467.1 UniGene:Dm.22095
SMR:Q6NQY9 STRING:Q6NQY9 EnsemblMetazoa:FBtr0086304 GeneID:37296
KEGG:dme:Dmel_CG9143 UCSC:CG9143-RA FlyBase:FBgn0034496
InParanoid:Q6NQY9 OrthoDB:EOG4VQ84N GenomeRNAi:37296 NextBio:802980
Uniprot:Q6NQY9
Length = 813
Score = 258 (95.9 bits), Expect = 8.2e-24, Sum P(3) = 8.2e-24
Identities = 78/278 (28%), Positives = 135/278 (48%)
Query: 169 LQSAVDILVATPGRLMD-HINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226
L+ DI+VATPGRL + + R +E + +LV+DETDR++ + + L ++L++
Sbjct: 387 LRQCPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLN 446
Query: 227 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 286
SD + + F+ SA +L +++ K P+ VK + + + + +L
Sbjct: 447 SDEQKKHQ-RQNFVYSATLTLVHDLPDHMQKRNVGKR-PKFVKQTVDQKIE---SLIEEL 501
Query: 287 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346
+ P + ++ ES +L+C K +L +Q + IVF +S++
Sbjct: 502 GISQPKIVDITSSQQTAQTLTES-RLLCPIDHKDYHLYYFIQR-HPGRTIVFCNSIDCVK 559
Query: 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 406
RL TL FG L Q R K L+ FR+ +L+++D RG+D+ V +
Sbjct: 560 RLATL---FGLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEH 616
Query: 407 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
V++Y P + Y+HR+GRTARA + G + EV
Sbjct: 617 VIHYQVPRTSENYVHRSGRTARANKHGITVMFMEPGEV 654
Score = 74 (31.1 bits), Expect = 8.2e-24, Sum P(3) = 8.2e-24
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
L LV+ PTR+LA+QVK+ A A G+ V G ++A + L + P +
Sbjct: 341 LYGLVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLAVAKQERVLRQCPDI 393
Score = 57 (25.1 bits), Expect = 8.2e-24, Sum P(3) = 8.2e-24
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 69 ERDLCINSPTGSGKTLSYALPI---VQTLSNRAVR 100
++D+ + TGSGKTL++ +P+ + L R +R
Sbjct: 253 KKDILGAAETGSGKTLAFGIPMLAGIMELKQRNIR 287
>UNIPROTKB|F1N0P2 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:DAAA02019036 IPI:IPI00709252
UniGene:Bt.61505 Ensembl:ENSBTAT00000056136 OMA:PLEPKEY
Uniprot:F1N0P2
Length = 392
Score = 216 (81.1 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 49/159 (30%), Positives = 86/159 (54%)
Query: 293 FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE----KCIVFTSSVESTHRL 348
F + + E+L+ L+ K+K YLV L+Q+ +E I+FT++ ++ L
Sbjct: 114 FFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQIL 173
Query: 349 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408
C +L F + + + +Q R L F+ ++L+++D +RG+D+ V V+
Sbjct: 174 CMMLRKFNFPTVALHS---MMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVI 230
Query: 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV 447
N++ P K YIHR GRTARAG+ G+ TL+ + ++ LV
Sbjct: 231 NHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLV 269
Score = 122 (48.0 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 35/96 (36%), Positives = 51/96 (53%)
Query: 44 QNMGISSLFPVQVAVWQETIGPGLFE-RDLCIN-SPTGSGKTLSYALPIVQTLSNRAVRC 101
+ MG+ PVQ+ P + E RD C+ + TGSGKT ++ LPI+Q LS
Sbjct: 18 RQMGLKQPTPVQLGCI-----PAILEGRD-CLGCAKTGSGKTAAFVLPILQKLSEDPYGI 71
Query: 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
LV+ PTR+LA Q+ + F + +GL + VG
Sbjct: 72 F-CLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVG 106
>UNIPROTKB|F8WAJ0 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AL160165 HGNC:HGNC:16715
IPI:IPI01010837 ProteinModelPortal:F8WAJ0 SMR:F8WAJ0
Ensembl:ENST00000438527 ArrayExpress:F8WAJ0 Bgee:F8WAJ0
Uniprot:F8WAJ0
Length = 722
Score = 298 (110.0 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 137/484 (28%), Positives = 212/484 (43%)
Query: 7 KSMPVLPWMRSPV----DVSLFEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQE 61
K+ P +P + PV +F L L P L + + +SS+ VQ ++
Sbjct: 77 KNNPDIPELHRPVVKQVQEKVFTSAAFHELG-LHPHLISTINTVLKMSSMTSVQ----KQ 131
Query: 62 TIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLAL 115
+I P L E RD + S TGSGKTL+Y +P+VQ+L + R ALV++PTR+LAL
Sbjct: 132 SI-PVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELAL 190
Query: 116 QVKD-VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
Q D V + P + G+ +G KR +A L+ ++
Sbjct: 191 QSFDTVQKLLKPFTWIVPGVLMGGE----------KRKSEKA-----------RLRKGIN 229
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
IL++TPGRL+DHI +T+ L +LV DE DR+L ++ + +L ++ + R +
Sbjct: 230 ILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQN 289
Query: 235 DA-STFLPSAFGSLKTIR-RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH-P 291
S L L I V DK + +L + P +LD P
Sbjct: 290 VLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIP 349
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST--HR-- 347
L T +P +L +L+C + +++ + ++K +VF SS E H
Sbjct: 350 ESLKQHVT--VVPSKL---RLVCLAA----FILQKCKFEEDQKMVVFFSSCELVEFHYSL 400
Query: 348 -LCTLLNHFG----------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
L TLL+ G +R+K G Q R+ + F + VL+ +D
Sbjct: 401 FLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAA 460
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLC 456
RG+D+ V +V Y+ P+ YIHR GRTAR G G +L E V L +
Sbjct: 461 RGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKIN 520
Query: 457 TSDI 460
S+I
Sbjct: 521 VSEI 524
>UNIPROTKB|F1SSH6 [details] [associations]
symbol:DDX56 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CU856650
Ensembl:ENSSSCT00000018227 Uniprot:F1SSH6
Length = 545
Score = 148 (57.2 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 42/142 (29%), Positives = 77/142 (54%)
Query: 265 PRLVK-MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLY 322
PR+ + ++SAT +D L +L LH+P+ L E++ P++L+ ++++CE++ K L
Sbjct: 187 PRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQQFQVVCETEEDKFLL 246
Query: 323 LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381
L ALL+ SL K ++F +++E ++RL L F I +G R + F
Sbjct: 247 LYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFS---IPACVLNGELPLRSRCHIISQF 303
Query: 382 REGKIQVLVSSDAMTRGMDVEG 403
+G ++++DA G V+G
Sbjct: 304 NQGLYDCVIATDAEVLGPPVKG 325
Score = 141 (54.7 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 48/150 (32%), Positives = 79/150 (52%)
Query: 30 DHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89
+H+ LDPRL A+ ++G S P + QE I L +D + + G GKT +YA+P
Sbjct: 10 EHMG-LDPRLLQAVTDLGWSR--PTLI---QEKIPLALEGKDSWLGAARGQGKTAAYAIP 63
Query: 90 IVQTLSNR-----AV-RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143
++Q L +R AV + +R LV++PT+DLA Q + + +A + +A S+ D
Sbjct: 64 MLQLLLHRKAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCARDIRVA-NVSAAED 122
Query: 144 EISE---LIKRPKLEAGICYDPEDVLQELQ 170
S+ L+++P + G P +L LQ
Sbjct: 123 SASQRAVLMEKPDIVVGT---PSRILNHLQ 149
Score = 107 (42.7 bits), Expect = 4.9e-20, Sum P(3) = 4.9e-20
Identities = 53/198 (26%), Positives = 83/198 (41%)
Query: 36 DPRLKVALQNMGISS--LFPVQVAVW------QETIGPGLFERDLCINSPTGSGKTLSYA 87
DP L + ++MG+ L V W QE I L +D + + G GKT +YA
Sbjct: 3 DPEL-LGFEHMGLDPRLLQAVTDLGWSRPTLIQEKIPLALEGKDSWLGAARGQGKTAAYA 61
Query: 88 LPIVQTLSNRAVRCLRALVVLPTRDLAL-QVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146
+P++Q L +R + + V R L L KD LA S+ +++
Sbjct: 62 IPMLQLLLHR--KAIGPAVEQAVRGLVLVPTKD--------------LARQAQSMIQQLA 105
Query: 147 ELIKRPKLEAGICYDPEDVLQE--LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204
R A + + Q L DI+V TP R+++H+ + L LVVD
Sbjct: 106 AYCARDIRVANVSAAEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSLELLVVD 165
Query: 205 ETDRLLREAYQAWLPTVL 222
E D L ++ L ++L
Sbjct: 166 EADLLFSFGFEEELKSLL 183
Score = 103 (41.3 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 25/60 (41%), Positives = 33/60 (55%)
Query: 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLL 454
+ RG+D V V+N+D P + YIHRAGRTARA G T + E +G + LL
Sbjct: 346 VARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGKIEELL 405
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 210 (79.0 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 56/188 (29%), Positives = 99/188 (52%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---TTGETRYKLPERLESYK 311
VE + P R+ M+ SATL +D +L++ ++ P + G T K+ L ++
Sbjct: 167 VEAIIDELPTKRMT-MLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTL--FE 223
Query: 312 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371
+ E KL L V +++ + CI+F + E+ + L+ KI + G+ ++
Sbjct: 224 VREEEKLSLLKDVTTIEN--PDSCIIFCRTQENVDHVYRQLDRVNYPCDKI--HGGMVQE 279
Query: 372 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431
R + FR+GK + LV++D RG+D++ + +V+NYD P ++Y+HR GRT RAG
Sbjct: 280 D-RFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGN 338
Query: 432 LGRCFTLL 439
G+ T +
Sbjct: 339 SGKAITFI 346
Score = 133 (51.9 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 53/196 (27%), Positives = 89/196 (45%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L ++ AL +G P +V E I L ++DL + S TGSGKT S+ +P+ + +
Sbjct: 11 LSKEVRRALTGLGYEH--PTEVQ--GEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMV 66
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ +ALV+ PTR+LA+QVK+ I + G+S A + EL ++ +
Sbjct: 67 EWEENKP-QALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHI 125
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE--TDRLLRE 212
G P VL ++ L ++D + ++DE T R+
Sbjct: 126 VVGT---PGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM- 181
Query: 213 AYQAWLPT-VLQLTRS 227
+ A LP V +L+R+
Sbjct: 182 LFSATLPEDVERLSRT 197
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 210 (79.0 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 56/188 (29%), Positives = 99/188 (52%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL---TTGETRYKLPERLESYK 311
VE + P R+ M+ SATL +D +L++ ++ P + G T K+ L ++
Sbjct: 167 VEAIIDELPTKRMT-MLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTL--FE 223
Query: 312 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371
+ E KL L V +++ + CI+F + E+ + L+ KI + G+ ++
Sbjct: 224 VREEEKLSLLKDVTTIEN--PDSCIIFCRTQENVDHVYRQLDRVNYPCDKI--HGGMVQE 279
Query: 372 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431
R + FR+GK + LV++D RG+D++ + +V+NYD P ++Y+HR GRT RAG
Sbjct: 280 D-RFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGN 338
Query: 432 LGRCFTLL 439
G+ T +
Sbjct: 339 SGKAITFI 346
Score = 133 (51.9 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 53/196 (27%), Positives = 89/196 (45%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L ++ AL +G P +V E I L ++DL + S TGSGKT S+ +P+ + +
Sbjct: 11 LSKEVRRALTGLGYEH--PTEVQ--GEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMV 66
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ +ALV+ PTR+LA+QVK+ I + G+S A + EL ++ +
Sbjct: 67 EWEENKP-QALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHI 125
Query: 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE--TDRLLRE 212
G P VL ++ L ++D + ++DE T R+
Sbjct: 126 VVGT---PGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTM- 181
Query: 213 AYQAWLPT-VLQLTRS 227
+ A LP V +L+R+
Sbjct: 182 LFSATLPEDVERLSRT 197
>GENEDB_PFALCIPARUM|PFD1070w [details] [associations]
symbol:PFD1070w "eukaryotic initiation factor,
putative" species:5833 "Plasmodium falciparum" [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 183 (69.5 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 56/198 (28%), Positives = 98/198 (49%)
Query: 255 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ +GFK++ Y P ++ SATL Q+ ++ +H P+ + L
Sbjct: 172 LNKGFKEQVYDIYRFLSPNTQIILSSATLPQEVLEITNKFMHKPVKILVKRDELTLEGIK 231
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI-KEYS 366
+ + I + + K L L +SL + +VF ++ ++ L E + K ++
Sbjct: 232 QFFVSIEKEQWKYETLADLYESLTITQAVVFCNT---QMKVDWLTKKMLESNFTVCKMHA 288
Query: 367 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426
G+ QS R + FR+ K +VL+S+D RG+DV+ V+ VVNYD P ++YIHR GR+
Sbjct: 289 GMS-QSERDDIMLKFRQCKFRVLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRS 347
Query: 427 ARAGQLGRCFTLLHKDEV 444
R G+ G + D++
Sbjct: 348 GRFGRKGVAINFVKNDDI 365
Score = 119 (46.9 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 28/92 (30%), Positives = 53/92 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P L RD+ + S +G+GKT +A+ + + NR + + +++ PTR+LA Q
Sbjct: 42 AIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALNCV-NRNLNETQVIILSPTRELAEQ 100
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ V A+A + +++ +G ++D+I L
Sbjct: 101 TQKVCLALADYIHVTIYCCIGGKKMSDDIKAL 132
Score = 76 (31.8 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
D ++ L + V ++ TPGR+ +N R +++ LV+DE D +L + ++
Sbjct: 127 DDIKALNNGVHVISGTPGRIYHMLNL-RHLKCKYIKQLVIDEADEMLNKGFK 177
>UNIPROTKB|Q8IFN9 [details] [associations]
symbol:PFD1070w "Eukaryotic initiation factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006446
"regulation of translational initiation" evidence=ISS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 183 (69.5 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 56/198 (28%), Positives = 98/198 (49%)
Query: 255 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ +GFK++ Y P ++ SATL Q+ ++ +H P+ + L
Sbjct: 172 LNKGFKEQVYDIYRFLSPNTQIILSSATLPQEVLEITNKFMHKPVKILVKRDELTLEGIK 231
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI-KEYS 366
+ + I + + K L L +SL + +VF ++ ++ L E + K ++
Sbjct: 232 QFFVSIEKEQWKYETLADLYESLTITQAVVFCNT---QMKVDWLTKKMLESNFTVCKMHA 288
Query: 367 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426
G+ QS R + FR+ K +VL+S+D RG+DV+ V+ VVNYD P ++YIHR GR+
Sbjct: 289 GMS-QSERDDIMLKFRQCKFRVLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRS 347
Query: 427 ARAGQLGRCFTLLHKDEV 444
R G+ G + D++
Sbjct: 348 GRFGRKGVAINFVKNDDI 365
Score = 119 (46.9 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 28/92 (30%), Positives = 53/92 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P L RD+ + S +G+GKT +A+ + + NR + + +++ PTR+LA Q
Sbjct: 42 AIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGALNCV-NRNLNETQVIILSPTRELAEQ 100
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ V A+A + +++ +G ++D+I L
Sbjct: 101 TQKVCLALADYIHVTIYCCIGGKKMSDDIKAL 132
Score = 76 (31.8 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
D ++ L + V ++ TPGR+ +N R +++ LV+DE D +L + ++
Sbjct: 127 DDIKALNNGVHVISGTPGRIYHMLNL-RHLKCKYIKQLVIDEADEMLNKGFK 177
>UNIPROTKB|Q9H8H2 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
EMBL:AF427339 EMBL:AF335567 EMBL:AF335568 EMBL:AF335569
EMBL:AK023695 EMBL:AK027002 EMBL:AK027484 EMBL:AL160165
EMBL:BC012726 IPI:IPI00043990 IPI:IPI00291296 IPI:IPI00552374
IPI:IPI00552716 RefSeq:NP_073616.6 RefSeq:NP_619526.1
UniGene:Hs.660767 ProteinModelPortal:Q9H8H2 SMR:Q9H8H2
IntAct:Q9H8H2 PhosphoSite:Q9H8H2 DMDM:71153334 SWISS-2DPAGE:Q9H8H2
PaxDb:Q9H8H2 PRIDE:Q9H8H2 DNASU:64794 Ensembl:ENST00000310532
Ensembl:ENST00000372153 Ensembl:ENST00000372155
Ensembl:ENST00000372159 GeneID:64794 KEGG:hsa:64794 UCSC:uc004cbq.1
UCSC:uc004cbs.2 UCSC:uc010mzu.1 CTD:64794 GeneCards:GC09M135468
HGNC:HGNC:16715 HPA:HPA020891 neXtProt:NX_Q9H8H2 PharmGKB:PA27218
HOVERGEN:HBG103793 InParanoid:Q9H8H2 OMA:ARIGCHG OrthoDB:EOG42V8FK
PhylomeDB:Q9H8H2 GenomeRNAi:64794 NextBio:66862 ArrayExpress:Q9H8H2
Bgee:Q9H8H2 CleanEx:HS_DDX31 Genevestigator:Q9H8H2
GermOnline:ENSG00000125485 Uniprot:Q9H8H2
Length = 851
Score = 298 (110.0 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 137/484 (28%), Positives = 212/484 (43%)
Query: 7 KSMPVLPWMRSPV----DVSLFEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQE 61
K+ P +P + PV +F L L P L + + +SS+ VQ ++
Sbjct: 206 KNNPDIPELHRPVVKQVQEKVFTSAAFHELG-LHPHLISTINTVLKMSSMTSVQ----KQ 260
Query: 62 TIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLAL 115
+I P L E RD + S TGSGKTL+Y +P+VQ+L + R ALV++PTR+LAL
Sbjct: 261 SI-PVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELAL 319
Query: 116 QVKD-VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
Q D V + P + G+ +G KR +A L+ ++
Sbjct: 320 QSFDTVQKLLKPFTWIVPGVLMGGE----------KRKSEKA-----------RLRKGIN 358
Query: 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
IL++TPGRL+DHI +T+ L +LV DE DR+L ++ + +L ++ + R +
Sbjct: 359 ILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQN 418
Query: 235 DA-STFLPSAFGSLKTIR-RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH-P 291
S L L I V DK + +L + P +LD P
Sbjct: 419 VLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIP 478
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVEST--HR-- 347
L T +P +L +L+C + +++ + ++K +VF SS E H
Sbjct: 479 ESLKQHVT--VVPSKL---RLVCLAA----FILQKCKFEEDQKMVVFFSSCELVEFHYSL 529
Query: 348 -LCTLLNHFG----------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396
L TLL+ G +R+K G Q R+ + F + VL+ +D
Sbjct: 530 FLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAA 589
Query: 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLC 456
RG+D+ V +V Y+ P+ YIHR GRTAR G G +L E V L +
Sbjct: 590 RGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKIN 649
Query: 457 TSDI 460
S+I
Sbjct: 650 VSEI 653
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 171 (65.3 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 50/196 (25%), Positives = 93/196 (47%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 304
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G ++ +++
Sbjct: 365 RFGRKGVAINMVTEED 380
Score = 128 (50.1 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 171 (65.3 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 50/196 (25%), Positives = 93/196 (47%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 304
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G ++ +++
Sbjct: 365 RFGRKGVAINMVTEED 380
Score = 128 (50.1 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 171 (65.3 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 50/196 (25%), Positives = 93/196 (47%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 304
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G ++ +++
Sbjct: 365 RFGRKGVAINMVTEED 380
Score = 128 (50.1 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 171 (65.3 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 50/196 (25%), Positives = 93/196 (47%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 304
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G ++ +++
Sbjct: 365 RFGRKGVAINMVTEED 380
Score = 128 (50.1 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 171 (65.3 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 50/196 (25%), Positives = 93/196 (47%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 304
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G ++ +++
Sbjct: 365 RFGRKGVAINMVTEED 380
Score = 128 (50.1 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 171 (65.3 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 50/196 (25%), Positives = 93/196 (47%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 304
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G ++ +++
Sbjct: 365 RFGRKGVAINMVTEED 380
Score = 128 (50.1 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 171 (65.3 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 50/196 (25%), Positives = 93/196 (47%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 247
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 248 QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH--G 304
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 305 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 364
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G ++ +++
Sbjct: 365 RFGRKGVAINMVTEED 380
Score = 128 (50.1 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 2.0e-23, Sum P(3) = 2.0e-23
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 204 (76.9 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 54/175 (30%), Positives = 84/175 (48%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT+ ++A+ ++ P + +P ++ Y L K K L LL
Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPN-IQQYYLEVHEKKKFDILTRLLDI 237
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
E IVF + L LN G I G Q+ R L+ F+EG I++L
Sbjct: 238 QAPELAIVFGRTKRRVDELAEALNLRGYAAEGIH---GDLSQAKRLSVLRKFKEGAIEIL 294
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
V++D RG+D+ GV +V N+D P ++Y+HR GRT RAG+ G T + E+
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREI 349
Score = 137 (53.3 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 41/125 (32%), Positives = 63/125 (50%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L + A++ MG P+Q +TI L +D+ + TG+GKT ++ +PIV+ +
Sbjct: 9 LSQEVMKAIERMGFEETTPIQA----KTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKV 64
Query: 95 S--NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152
+ N AV+ ALVV PTR+LA+QV + I + V G I +I L K P
Sbjct: 65 NVKNSAVQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHP 121
Query: 153 KLEAG 157
+ G
Sbjct: 122 HVIVG 126
Score = 102 (41.0 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 39/156 (25%), Positives = 73/156 (46%)
Query: 161 DPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLP 219
D E ++ L+ ++V TPGR++DHIN RG LEH+ +V+DE D +L + +
Sbjct: 109 DIERQIRALKKHPHVIVGTPGRIIDHIN--RGTLRLEHVHTVVLDEADEMLNMGFIEDIE 166
Query: 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG-VERGFKDKPYPRLVKMVLSATLTQ 278
+L ++ + A+ P + + + V+ K+ P + + L +
Sbjct: 167 AILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKK 226
Query: 279 DPNKLAQL-DLHHP-LFLTTGETRYKLPERLESYKL 312
+ L +L D+ P L + G T+ ++ E E+ L
Sbjct: 227 KFDILTRLLDIQAPELAIVFGRTKRRVDELAEALNL 262
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 181 (68.8 bits), Expect = 2.6e-23, Sum P(3) = 2.6e-23
Identities = 48/186 (25%), Positives = 87/186 (46%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT +LA L P+ + G ++ ++ K K +++
Sbjct: 404 VMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVEN 463
Query: 330 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ +K I+F S H L + F I + G QS + + ++ F+ G I++
Sbjct: 464 MSPNDKVIMFVSQ---KHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKI 520
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVG 448
L+++D ++RG+D+ V +V NYD P I Y+HR G R G+ G TL+ + + + G
Sbjct: 521 LITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAG 580
Query: 449 CLTPLL 454
L +L
Sbjct: 581 ELIKIL 586
Score = 112 (44.5 bits), Expect = 2.6e-23, Sum P(3) = 2.6e-23
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
++++ VDI++ATPGRL D + L + YLV+DE D++L ++ + +L
Sbjct: 339 IEDISKGVDIIIATPGRLND-LQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDV 397
Query: 226 RSDNENRFSDAS 237
R D + + A+
Sbjct: 398 RPDRQTVMTSAT 409
Score = 96 (38.9 bits), Expect = 2.6e-23, Sum P(3) = 2.6e-23
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P L ++ +GI P+Q W I G+ DL + + TG+GKTLSY +P L +
Sbjct: 231 PDLLKSIIRVGIVKPTPIQSQAWP-IILQGI---DLIVVAQTGTGKTLSYLMPGFIHLDS 286
Query: 97 RAV-RCLR----ALVVLPTRDLALQVK 118
+ + R R LV+ PTR+LAL V+
Sbjct: 287 QPISREQRNGPGMLVLTPTRELALHVE 313
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 194 (73.4 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 54/190 (28%), Positives = 84/190 (44%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-----ESKLKPLYLV 324
++ SAT ++ +LA+ L + + + G + +C E KLK L
Sbjct: 463 LMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSD 522
Query: 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
S K I+F + L + FG ++ G + QS R L+ FR G
Sbjct: 523 IYDTSESPGKIIIFVETKRRVDNLVRFIRSFG---VRCGAIHGDKSQSERDFVLREFRSG 579
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
K +LV++D RG+DV+G+ V+N+D P + YIHR GRT R+ G F K+
Sbjct: 580 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 639
Query: 445 CLVGCLTPLL 454
L +L
Sbjct: 640 KQAKALVDVL 649
Score = 112 (44.5 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+++LQ +I++ATPGRL+D ++A G T L+ YLV+DE DR+L ++ + ++
Sbjct: 398 MRDLQRGCEIVIATPGRLIDFLSA--GSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQ 455
Query: 225 TRSDNE 230
R D +
Sbjct: 456 IRPDRQ 461
Score = 84 (34.6 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 31/94 (32%), Positives = 47/94 (50%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
HLP D +K ++ G + +Q W + F + I + TGSGKTL Y LP
Sbjct: 287 HLP--DYVMK-EIRRQGYKAPTAIQAQGWPIAMSGSNF---VGI-AKTGSGKTLGYILPA 339
Query: 91 VQTLSNRAVRCLR----ALVVLPTRDLALQVKDV 120
+ ++N+ ALV+ PTR+LA Q++ V
Sbjct: 340 IVHINNQQPLQRGDGPIALVLAPTRELAQQIQQV 373
>TAIR|locus:2088237 [details] [associations]
symbol:EIF4A1 "eukaryotic translation initiation factor
4A1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005618 GO:GO:0046686 EMBL:CP002686 GO:GO:0005730
GO:GO:0016020 GO:GO:0048046 GO:GO:0006413 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OMA:SKRERIM
IPI:IPI00657454 RefSeq:NP_001030693.1 UniGene:At.23558
UniGene:At.28184 ProteinModelPortal:F4JEL4 SMR:F4JEL4 PRIDE:F4JEL4
EnsemblPlants:AT3G13920.2 GeneID:820605 KEGG:ath:AT3G13920
Uniprot:F4JEL4
Length = 415
Score = 179 (68.1 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
Identities = 51/209 (24%), Positives = 100/209 (47%)
Query: 255 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y P++ V SAT+ + ++ + + P+ + L
Sbjct: 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIK 253
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + + K L L ++L + ++F V + ++ L + + G
Sbjct: 254 QFYVNVEKEEWKLETLCDLYETLAITQSVIF---VNTRRKVDWLTDKMRSRDHTVSATHG 310
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q+ R ++ FR G +VL+++D + RG+DV+ V+ V+N+D P + Y+HR GR+
Sbjct: 311 DMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSG 370
Query: 428 RAGQLGRCFTLLHKDEVCLVGCLTPLLLC 456
R G+ G + +D+ ++ CL +C
Sbjct: 371 RFGRKGVAINFVTRDDERML-CLRTWPIC 398
Score = 122 (48.0 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P D+ + +G+GKT ++ ++Q L ++C +ALV+ PTR+LA Q
Sbjct: 64 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQC-QALVLAPTRELAQQ 122
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADE 144
++ V A+ +G+ V VG +S+ ++
Sbjct: 123 IEKVMRALGDYLGVKVHACVGGTSVRED 150
Score = 78 (32.5 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
LQ+ V ++V TPGR+ D + + +++ V+DE D +L ++ + + QL
Sbjct: 154 LQAGVHVVVGTPGRVFDMLKR-QSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQL 208
Score = 40 (19.1 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 24/88 (27%), Positives = 41/88 (46%)
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAM-TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426
L+RQS+R+ +K F VL +D M +RG + + ++ P I+ + A
Sbjct: 172 LKRQSLRADNIKMF------VLDEADEMLSRGFK-DQIYDIFQL-LPPKIQVGVFSATMP 223
Query: 427 ARAGQLGRCFT------LLHKDEVCLVG 448
A ++ R F L+ +DE+ L G
Sbjct: 224 PEALEITRKFMSKPVRILVKRDELTLEG 251
>SGD|S000003139 [details] [associations]
symbol:ROK1 "RNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0030686
"90S preribosome" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0048254 "snoRNA localization" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000472 "endonucleolytic
cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003139
GO:GO:0005524 GO:GO:0005730 EMBL:BK006941 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:X85757
GO:GO:0030686 GO:GO:0004004 GO:GO:0000447 GO:GO:0000472
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000480
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG OrthoDB:EOG425926 EMBL:Z34901 EMBL:Z72693 PIR:S59649
RefSeq:NP_011344.1 ProteinModelPortal:P45818 SMR:P45818
DIP:DIP-5111N IntAct:P45818 MINT:MINT-483312 STRING:P45818
PaxDb:P45818 PeptideAtlas:P45818 EnsemblFungi:YGL171W GeneID:852704
KEGG:sce:YGL171W CYGD:YGL171w NextBio:972056 Genevestigator:P45818
GermOnline:YGL171W GO:GO:0048254 Uniprot:P45818
Length = 564
Score = 200 (75.5 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 54/185 (29%), Positives = 90/185 (48%)
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 324
P L K + SAT+ + ++AQ + P+ + G + +E + C ++ L +
Sbjct: 304 PSLRKAMFSATIPSNVEEIAQSIMMDPVRVIIGH-KEAANTNIEQKLIFCGNEEGKLIAI 362
Query: 325 ALLQSLGEEK--CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L GE K I+F +ES R L + RI + + R + ++ F+
Sbjct: 363 RQLVQEGEFKPPIIIF---LESITRAKALYHELMYDRINVDVIHAERTALQRDRIIERFK 419
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK- 441
G++ L+ +D + RG+D +GVN V+NYD P + Y+HR GRT R G+ G+ T K
Sbjct: 420 TGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQ 479
Query: 442 DEVCL 446
D V +
Sbjct: 480 DSVAI 484
Score = 144 (55.7 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 56/226 (24%), Positives = 103/226 (45%)
Query: 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSP 77
P+ + FED + D RL L G + P+Q E I L RD+ P
Sbjct: 114 PLPIGSFEDL-ISRFS-FDKRLLNNLIENGFTEPTPIQC----ECIPVALNNRDVLACGP 167
Query: 78 TGSGKTLSYALPIVQTL-SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAV 136
TGSGKTL++ +P+VQ + ++ L+ L++ PT++LA Q+ ++ + L +
Sbjct: 168 TGSGKTLAFLIPLVQQIIDDKQTAGLKGLIISPTKELANQIFIECFKLSYKIFLEKKRPL 227
Query: 137 GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLE 196
+ ++ + KL+ + D + DI+++TP RL+D + L
Sbjct: 228 QVALLSKSLGA-----KLKNKVVSDKK---------YDIIISTPLRLIDVVK-NEALDLS 272
Query: 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242
+ +L+ DE D+L + + +L R + + ++T +PS
Sbjct: 273 KVKHLIFDEADKLFDKTFVEQSDDILSACREPSLRKAMFSAT-IPS 317
>MGI|MGI:1351337 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1351337
GO:GO:0005524 GO:GO:0003723 EMBL:CH466549 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 CTD:57062
HOGENOM:HOG000290702 HOVERGEN:HBG104200 EMBL:AF214732 EMBL:BC055048
EMBL:BC055317 EMBL:U46690 IPI:IPI00380228 RefSeq:NP_001152974.1
RefSeq:NP_065240.2 UniGene:Mm.3935 UniGene:Mm.475067
ProteinModelPortal:Q9ESV0 SMR:Q9ESV0 PhosphoSite:Q9ESV0
PaxDb:Q9ESV0 PRIDE:Q9ESV0 Ensembl:ENSMUST00000044923 GeneID:27225
KEGG:mmu:27225 GeneTree:ENSGT00550000074847 InParanoid:Q7TM97
OrthoDB:EOG45TCMP NextBio:305144 Bgee:Q9ESV0 CleanEx:MM_DDX24
Genevestigator:Q9ESV0 GermOnline:ENSMUSG00000041645 Uniprot:Q9ESV0
Length = 857
Score = 218 (81.8 bits), Expect = 3.0e-23, Sum P(4) = 3.0e-23
Identities = 77/274 (28%), Positives = 128/274 (46%)
Query: 174 DILVATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
+I++ATPGRL + + L L LV+DE DR++ + + A L +L++ N++
Sbjct: 439 EIVIATPGRLWELVKEKHPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEML---NDS 495
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
+++ + L F + T+ R K ++ K L Q K+
Sbjct: 496 QYNPSRQTL--VFSATLTLVHQAPARILHKKHVKKMDKTDKLDLLMQ---KVGMRGKPKV 550
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCT 350
+ LT E E L K+ CE+ K LYL L+Q G + +VF +S+ RL
Sbjct: 551 IDLTRNEGTV---ETLTETKIHCETDEKDLYLYYFLMQYPG--RSLVFANSISCIKRLSG 605
Query: 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410
LL + + + Q R + L+ F + VL+++D RG+D+ V +V++Y
Sbjct: 606 LLKVLDVMPLTLH---ACMHQKQRLRNLEQFARLQDCVLLATDVAARGLDIPKVQHVIHY 662
Query: 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
P + YIHR+GRTARA G L+ ++V
Sbjct: 663 QVPRTSEIYIHRSGRTARAASEGLSLMLIGPEDV 696
Score = 82 (33.9 bits), Expect = 3.0e-23, Sum P(4) = 3.0e-23
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R L LV+ PTR+LA+QV+ A+A G++ + VG S + L + P++
Sbjct: 386 RPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEI 440
Score = 79 (32.9 bits), Expect = 3.0e-23, Sum P(4) = 3.0e-23
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTL 94
AL +G S+ P+Q T+ P + ++ D+ + TGSGKTL++A+P++ ++
Sbjct: 207 ALSFLGFSAPTPIQAL----TLAPAIRDKLDILGAAETGSGKTLAFAIPMIHSV 256
Score = 49 (22.3 bits), Expect = 3.0e-23, Sum P(4) = 3.0e-23
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 5 KKKSMPVL-PWMRSPVDVSLFEDCPLDHLPCLD 36
++K + ++ W + +D +LF D +D L C +
Sbjct: 19 QRKGIKIVGKWKQVTIDPNLFADGQMDDLVCFE 51
>ZFIN|ZDB-GENE-031113-10 [details] [associations]
symbol:ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
21" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 InterPro:IPR017956 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
ZFIN:ZDB-GENE-031113-10 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 CTD:9188 HOVERGEN:HBG051331
OrthoDB:EOG46143T EMBL:BC160629 IPI:IPI00611974
RefSeq:NP_001120807.1 UniGene:Dr.104447 ProteinModelPortal:B1H1J4
STRING:B1H1J4 GeneID:799650 KEGG:dre:799650 NextBio:20933916
Uniprot:B1H1J4
Length = 759
Score = 157 (60.3 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 371 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430
Q R TLK FR G +VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG
Sbjct: 453 QKQREVTLKGFRNGSFEVLVATNVAARGLDIPEVDLVIQSSPPNDVESYIHRSGRTGRAG 512
Query: 431 QLGRCFTLLHKDE 443
+ G C + E
Sbjct: 513 RTGICICFYQRKE 525
Score = 128 (50.1 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 42/119 (35%), Positives = 61/119 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
+ P LQ G+S LF +QV + + G +DL + TG+GKT S+A+P+V+ L
Sbjct: 173 ISPNTIKLLQARGVSYLFDIQVKTFN-AVYDG---KDLIGQARTGTGKTFSFAVPLVEKL 228
Query: 95 SN-----RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ R R + LV+ PTR+LA+QV F I LSV G SS +I +
Sbjct: 229 QSGDQERRRGRPPKVLVLAPTRELAIQVTKDFKDITRK--LSVTCFYGGSSYNPQIDAI 285
Score = 109 (43.4 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 157 GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216
G Y+P+ + ++S +D+LV TPGR+ DH+ + L L ++V+DE D++L +
Sbjct: 275 GSSYNPQ--IDAIRSGIDVLVGTPGRIRDHLQNNK-LDLSQLQHVVLDEVDQMLDMGFAE 331
Query: 217 WLPTVLQLT-RSDNENR 232
+ +L + + D E +
Sbjct: 332 QVEEILSASYKKDAEQK 348
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 207 (77.9 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 58/178 (32%), Positives = 89/178 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHH-PLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALL 327
M+ SAT T LA++ L PL++ E + LE ++C+S + L L + L
Sbjct: 290 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFL 349
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ ++K IVF SS S LLN+ + + + + G Q+Q R+ T F K
Sbjct: 350 KRNVKKKIIVFLSSCNSVKFYSELLNY---IDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 406
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLHKDEV 444
+LV +D RG+D+ V+ +V +D P + YIHR GRTAR Q G+ L E+
Sbjct: 407 ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSEL 464
Score = 136 (52.9 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 37/129 (28%), Positives = 68/129 (52%)
Query: 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
ED ++ +P +K A++ MG + + VQ +TI P L RD+ + TGSGKTL
Sbjct: 106 EDVLFENADFSEPTMK-AIKEMGFTKMTKVQA----KTIPPLLAGRDVLGAAKTGSGKTL 160
Query: 85 SYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
++ +P ++ L + ++ +++ PTR+LALQ+ V + + G+ +G +
Sbjct: 161 AFLIPAIELLYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADR 220
Query: 142 ADEISELIK 150
E ++L K
Sbjct: 221 RQEATKLAK 229
Score = 127 (49.8 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 40/118 (33%), Positives = 61/118 (51%)
Query: 124 IAPAVGLSVGLAVGQSSIADEI----SELIKRPKLEAGICYDPEDVLQE---LQSAVDIL 176
I P G +V + +A +I EL++ GI D QE L V++L
Sbjct: 175 IKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLL 234
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
VATPGRL+DH+ T+ F +L LV+DE DR+L ++ + ++++ NENR S
Sbjct: 235 VATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVL--PNENRQS 289
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 207 (77.9 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 58/178 (32%), Positives = 89/178 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHH-PLFLTT-GETRYKLPERLESYKLICESKLKPLYLVALL 327
M+ SAT T LA++ L PL++ E + LE ++C+S + L L + L
Sbjct: 290 MLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFL 349
Query: 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ ++K IVF SS S LLN+ + + + + G Q+Q R+ T F K
Sbjct: 350 KRNVKKKIIVFLSSCNSVKFYSELLNY---IDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 406
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLHKDEV 444
+LV +D RG+D+ V+ +V +D P + YIHR GRTAR Q G+ L E+
Sbjct: 407 ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSEL 464
Score = 136 (52.9 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 37/129 (28%), Positives = 68/129 (52%)
Query: 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTL 84
ED ++ +P +K A++ MG + + VQ +TI P L RD+ + TGSGKTL
Sbjct: 106 EDVLFENADFSEPTMK-AIKEMGFTKMTKVQA----KTIPPLLAGRDVLGAAKTGSGKTL 160
Query: 85 SYALPIVQTLSNRAVRCLRA---LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSI 141
++ +P ++ L + ++ +++ PTR+LALQ+ V + + G+ +G +
Sbjct: 161 AFLIPAIELLYSLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADR 220
Query: 142 ADEISELIK 150
E ++L K
Sbjct: 221 RQEATKLAK 229
Score = 127 (49.8 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 40/118 (33%), Positives = 61/118 (51%)
Query: 124 IAPAVGLSVGLAVGQSSIADEI----SELIKRPKLEAGICYDPEDVLQE---LQSAVDIL 176
I P G +V + +A +I EL++ GI D QE L V++L
Sbjct: 175 IKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLL 234
Query: 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFS 234
VATPGRL+DH+ T+ F +L LV+DE DR+L ++ + ++++ NENR S
Sbjct: 235 VATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVL--PNENRQS 289
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 223 (83.6 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 59/186 (31%), Positives = 97/186 (52%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT +LA L P+ + G + ++ +I + K LQS
Sbjct: 397 IMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQS 456
Query: 330 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
L ++K IVF S L + L+ G I ++ G + QS R + L F+ GK+++
Sbjct: 457 LSPKDKVIVFVSRKLIADDLSSDLSIQG---IPVQSLHGDREQSDRERALDDFKTGKVKI 513
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVG 448
L+++D +RG+DV V +V NY+ P I+ Y+HR GRT RAG++G TL+ +D+ + G
Sbjct: 514 LIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAG 573
Query: 449 CLTPLL 454
L +L
Sbjct: 574 ELIEIL 579
Score = 109 (43.4 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+Q++ VDI++ATPGRL D + L + YLV+DE D++L ++ + +L
Sbjct: 332 IQDIMKGVDIIIATPGRLND-LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDV 390
Query: 226 RSDNENRFSDAS 237
R D + + A+
Sbjct: 391 RPDRQTIMTSAT 402
Score = 101 (40.6 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 55/200 (27%), Positives = 89/200 (44%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P L +++ G P+Q W + G+ DL + TG+GKTLSY +P L++
Sbjct: 224 PELMKSIKKAGFQKPTPIQSQAWPIVL-QGI---DLIGIAQTGTGKTLSYLMPGFIHLNS 279
Query: 97 RAV-RCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ V R R LV+ PTR+LALQV + + GL G + +I +++K
Sbjct: 280 QPVSRGKRNGPGMLVLTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQIQDIMKG 338
Query: 152 PKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEH-LCYLVVD-ETD 207
+ I P L +LQ + V++ T ++D + EH + +++D D
Sbjct: 339 VDI---IIATPGR-LNDLQMNNFVNLRSITY-LVLDEADKMLDLGFEHQIMKILLDVRPD 393
Query: 208 RLLREAYQAWLPTVLQLTRS 227
R W T+ QL S
Sbjct: 394 RQTIMTSATWPDTIRQLAHS 413
Score = 50 (22.7 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
+ + +++ P++ W + +V +E D LP + V + SS+ VQV +W++
Sbjct: 135 DNSVREAQPLIDWDQIKAEVVEWEKRKWD-LPPIHKNFYV--ETKATSSMSQVQVDIWRK 191
Score = 38 (18.4 bits), Expect = 6.8e-16, Sum P(3) = 6.8e-16
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKL 283
C E F PYP L+K + A Q P +
Sbjct: 214 CKFEDAFG--PYPELMKSIKKAGF-QKPTPI 241
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 179 (68.1 bits), Expect = 3.6e-23, Sum P(3) = 3.6e-23
Identities = 51/186 (27%), Positives = 94/186 (50%)
Query: 255 VERGFKDKPY------PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y P+ V++VL SAT+ + + + +P+ + + L
Sbjct: 184 LSRGFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIR 243
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + + K L L + + ++F ++ ++ TL E + + G
Sbjct: 244 QFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNT---RRKVDTLTEKMTENQFTVSCLHG 300
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q+ R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P+ + YIHR GR+
Sbjct: 301 DMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSG 360
Query: 428 RAGQLG 433
R G+ G
Sbjct: 361 RFGRKG 366
Score = 126 (49.4 bits), Expect = 3.6e-23, Sum P(3) = 3.6e-23
Identities = 38/124 (30%), Positives = 69/124 (55%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D LK L GI F A+ + I P +D+ + +G+GKT ++++ I+Q +
Sbjct: 33 DMELKEELLR-GIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRI 91
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
+ ++ALV+ PTR+LA Q++ V +A+ + +++ +G +S+ D+ +R KL
Sbjct: 92 DHEDPH-VQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDD-----QR-KL 144
Query: 155 EAGI 158
EAGI
Sbjct: 145 EAGI 148
Score = 72 (30.4 bits), Expect = 3.6e-23, Sum P(3) = 3.6e-23
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
D ++L++ + ++V TPGR+ D IN + V+DE D +L ++
Sbjct: 139 DDQRKLEAGIHVVVGTPGRVGDMINRN-ALDTSRIKMFVLDEADEMLSRGFK 189
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 207 (77.9 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
Identities = 63/208 (30%), Positives = 98/208 (47%)
Query: 270 MVLSATLTQDP-NKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SATL D A+ L P+ ++ + + + + Y + + K LV LL+
Sbjct: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ IVF E H L L G I G Q R++ +K EG++ V
Sbjct: 245 QPEATRSIVFVRKRERVHELANWLREAG---INNCYLEGEMVQGKRNEAIKRLTEGRVNV 301
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVG 448
LV++D RG+D+ V++V N+D P TY+HR GRTARAG+ G +L+ + L+G
Sbjct: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLG 361
Query: 449 CL-----TPLLLCTSDILQRKTRLQKSK 471
+ P+ D L+ KTR K
Sbjct: 362 KVGRYIEEPIKARVIDELRPKTRAPSEK 389
Score = 131 (51.2 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
Identities = 38/106 (35%), Positives = 55/106 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD L ALQ+ G + +Q A I P L RD+ ++PTG+GKT +Y LP +Q L
Sbjct: 11 LDESLLEALQDKGFTRPTAIQAAA----IPPALDGRDVLGSAPTGTGKTAAYLLPALQHL 66
Query: 95 SN---RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
+ + R L++ PTR+LA+QV D +A L + G
Sbjct: 67 LDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITG 112
Score = 82 (33.9 bits), Expect = 4.8e-18, Sum P(2) = 4.8e-18
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 141 IADEISELIKRPKLE-----AGICY-DPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194
++D EL K L+ G+ Y + +V E Q DI+VAT GRL+ +I F
Sbjct: 92 VSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQ---DIVVATTGRLLQYIKE-ENFD 147
Query: 195 LEHLCYLVVDETDRLL 210
+ L++DE DR+L
Sbjct: 148 CRAVETLILDEADRML 163
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 223 (83.6 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 59/186 (31%), Positives = 97/186 (52%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT +LA L P+ + G + ++ +I + K LQS
Sbjct: 406 IMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQS 465
Query: 330 LG-EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
L ++K IVF S L + L+ G I ++ G + QS R + L F+ GK+++
Sbjct: 466 LSPKDKVIVFVSRKLIADDLSSDLSIQG---IPVQSLHGDREQSDRERALDDFKTGKVKI 522
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVG 448
L+++D +RG+DV V +V NY+ P I+ Y+HR GRT RAG++G TL+ +D+ + G
Sbjct: 523 LIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAG 582
Query: 449 CLTPLL 454
L +L
Sbjct: 583 ELIEIL 588
Score = 109 (43.4 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+Q++ VDI++ATPGRL D + L + YLV+DE D++L ++ + +L
Sbjct: 341 IQDIMKGVDIIIATPGRLND-LQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDV 399
Query: 226 RSDNENRFSDAS 237
R D + + A+
Sbjct: 400 RPDRQTIMTSAT 411
Score = 101 (40.6 bits), Expect = 3.4e-21, Sum P(2) = 3.4e-21
Identities = 55/200 (27%), Positives = 89/200 (44%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P L +++ G P+Q W + G+ DL + TG+GKTLSY +P L++
Sbjct: 233 PELMKSIKKAGFQKPTPIQSQAWPIVL-QGI---DLIGIAQTGTGKTLSYLMPGFIHLNS 288
Query: 97 RAV-RCLR----ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151
+ V R R LV+ PTR+LALQV + + GL G + +I +++K
Sbjct: 289 QPVSRGKRNGPGMLVLTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQIQDIMKG 347
Query: 152 PKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEH-LCYLVVD-ETD 207
+ I P L +LQ + V++ T ++D + EH + +++D D
Sbjct: 348 VDI---IIATPGR-LNDLQMNNFVNLRSITY-LVLDEADKMLDLGFEHQIMKILLDVRPD 402
Query: 208 RLLREAYQAWLPTVLQLTRS 227
R W T+ QL S
Sbjct: 403 RQTIMTSATWPDTIRQLAHS 422
Score = 50 (22.7 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 13/60 (21%), Positives = 29/60 (48%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQE 61
+ + +++ P++ W + +V +E LP + V + SS+ VQV +W++
Sbjct: 143 DNSVREAQPLIDWDQIKAEVVEWEKRKWADLPPIHKNFYV--ETKATSSMSQVQVDIWRK 200
Score = 38 (18.4 bits), Expect = 7.4e-16, Sum P(3) = 7.4e-16
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKL 283
C E F PYP L+K + A Q P +
Sbjct: 223 CKFEDAFG--PYPELMKSIKKAGF-QKPTPI 250
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 183 (69.5 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
Identities = 56/198 (28%), Positives = 94/198 (47%)
Query: 255 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ +GFK++ Y P +V+SATL QD ++ +P+ + L E L
Sbjct: 176 LNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTL-EGL 234
Query: 308 ESYKLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366
+ Y + E + K L L +L + ++F +S ++ L E +
Sbjct: 235 KQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNS---RRKVDWLTEKMREANFTVTSMH 291
Query: 367 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426
G Q R ++ FR+G +VL+ +D RG+DV+ V+ V+NYD PA + YIHR GR+
Sbjct: 292 GEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRS 351
Query: 427 ARAGQLGRCFTLLHKDEV 444
R G+ G + ++V
Sbjct: 352 GRFGRKGVAINFVTNEDV 369
Score = 126 (49.4 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
Identities = 24/79 (30%), Positives = 54/79 (68%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
RD+ + +G+GKT ++++ I+Q++ + +VR +AL++ PTR+LA+Q+++V A+ +
Sbjct: 59 RDVIAQAQSGTGKTATFSIGILQSI-DLSVRDTQALILSPTRELAVQIQNVVLALGDHMN 117
Query: 130 LSVGLAVGQSSIADEISEL 148
+ +G +S+ ++I +L
Sbjct: 118 VQCHACIGGTSVGNDIKKL 136
Score = 66 (28.3 bits), Expect = 4.1e-23, Sum P(3) = 4.1e-23
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
+++L ++ TPGR+ D I R ++ L++DE D LL + ++
Sbjct: 133 IKKLDYGQHVVSGTPGRVTDMIRR-RNLRTRNVKMLILDEADELLNQGFK 181
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 174 (66.3 bits), Expect = 4.6e-23, Sum P(3) = 4.6e-23
Identities = 47/181 (25%), Positives = 88/181 (48%)
Query: 265 PRLVKMVL-SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323
P ++VL SATLTQD + + + P+ + L + + + + K L
Sbjct: 203 PNGTQIVLVSATLTQDVVSMTEKFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTL 262
Query: 324 VALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383
+ SL + ++F ++ + +L + + + G Q R + +K+FR
Sbjct: 263 CDIYDSLTITQAVIFCNTKKKVDQLTEQMR---DANFTVASMHGDMVQKEREEIIKSFRS 319
Query: 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
G+ +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR+ R G+ G + +
Sbjct: 320 GENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSD 379
Query: 444 V 444
+
Sbjct: 380 I 380
Score = 121 (47.7 bits), Expect = 4.6e-23, Sum P(3) = 4.6e-23
Identities = 27/92 (29%), Positives = 54/92 (58%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + RD + +G+GKT ++++ +Q + VR + L++ PTR+LA Q
Sbjct: 57 AIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVEVN-VRSPQVLILSPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
++ V A++ + + V VG +++D++ +L
Sbjct: 116 IQKVALALSEFMNIQVHACVGGKNLSDDVKKL 147
Score = 82 (33.9 bits), Expect = 4.6e-23, Sum P(3) = 4.6e-23
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
D +++L++ V I+ TPGR++D I + H+ +++DE D +L +Q
Sbjct: 142 DDVKKLETGVHIVSGTPGRVLDMITR-KSLPTRHIKMMILDEADEMLSLGFQ 192
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 194 (73.4 bits), Expect = 4.7e-23, Sum P(3) = 4.7e-23
Identities = 58/186 (31%), Positives = 88/186 (47%)
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYL 323
PR ++ +AT ++ K+A L +P+ + G + + Y + K L
Sbjct: 611 PRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRL 670
Query: 324 VALLQSLGE-EKCIVFTSSVESTHRLCTLL-----NHFGELRIKIKEYSGLQRQSVRSKT 377
+L+S K I+F S T RLC L HFG + I G + Q R
Sbjct: 671 EQILRSQERGSKVIIFCS----TKRLCDHLARSVGRHFGAVVIH-----GDKTQGERDWV 721
Query: 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437
L FR GK VL+++D RG+D++ + V+NYD P ++ Y+HR GRT RAG G FT
Sbjct: 722 LNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFT 781
Query: 438 LLHKDE 443
+ +
Sbjct: 782 FFTEQD 787
Score = 109 (43.4 bits), Expect = 4.7e-23, Sum P(3) = 4.7e-23
Identities = 33/117 (28%), Positives = 53/117 (45%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP---IV 91
L P + L + G S P+Q W L RD+ + TGSGKTL Y +P ++
Sbjct: 442 LPPEILRELLSAGFPSPTPIQAQTWPIA----LQSRDIVAIAKTGSGKTLGYLIPAFILL 497
Query: 92 QTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ N + L++ PTR+LA Q++D + +S G + ++ EL
Sbjct: 498 RHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKEL 554
Score = 92 (37.4 bits), Expect = 4.7e-23, Sum P(3) = 4.7e-23
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
L+EL+ DI+VATPGRL D I + + + LV+DE DR+L ++
Sbjct: 551 LKELERGADIVVATPGRLND-ILEMKMIDFQQVSLLVLDEADRMLDMGFE 599
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 181 (68.8 bits), Expect = 4.9e-23, Sum P(3) = 4.9e-23
Identities = 56/181 (30%), Positives = 84/181 (46%)
Query: 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER--LESYKLICE-S 316
K+ P R M +AT + K+A L +P + G + + + +++
Sbjct: 330 KEIPTKRQTLMY-TATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPME 388
Query: 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376
K + L + Q G K I+F S T R+C L + G + Q R
Sbjct: 389 KQRRLEQILRSQEPGS-KVIIFCS----TKRMCDQLTRNLTRQFGAAAIHGDKSQPERDN 443
Query: 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436
L FR G+ VLV++D RG+DV+ + VVNYD P ++ Y+HR GRT RAG G+ F
Sbjct: 444 VLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAF 503
Query: 437 T 437
T
Sbjct: 504 T 504
Score = 107 (42.7 bits), Expect = 4.9e-23, Sum P(3) = 4.9e-23
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
L++L+ DI+VATPGRL D + R +L + YLV+DE DR+L ++ + +++
Sbjct: 274 LRDLERGADIVVATPGRLNDILEMRR-ISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
Score = 98 (39.6 bits), Expect = 4.9e-23, Sum P(3) = 4.9e-23
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP---IVQT 93
P L + + G S+ P+Q W + G RD+ + TGSGKTL Y +P +Q
Sbjct: 167 PELLREVLSAGFSAPTPIQAQSWPIAM-QG---RDIVAIAKTGSGKTLGYLIPGFLHLQR 222
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKD 119
+ N + LV+ PTR+LA Q+++
Sbjct: 223 IRNDSRMGPTILVLSPTRELATQIQE 248
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 191 (72.3 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 55/177 (31%), Positives = 83/177 (46%)
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
P R V M+ SAT Q +H P + E L + Y + K K
Sbjct: 214 PKERQV-MLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLG--VTQYYAFVQEKQKVHC 270
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L L + L + I+F +S + L + G I +S + Q+ R++ FR
Sbjct: 271 LNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYI--HSKMA-QNHRNRVFHDFR 327
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+G + LV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+
Sbjct: 328 QGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLI 384
Score = 147 (56.8 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 33/115 (28%), Positives = 63/115 (54%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
CL L + + G P+Q A +IG L +D+ + G+GKT +Y +P+++
Sbjct: 49 CLGRDLLMGIFEKGWEKPSPIQEA----SIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ A++ ++A+V++PTR+LALQ + ++ + L V + G + + D+I L
Sbjct: 105 IQP-ALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRL 158
Score = 107 (42.7 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193
LA+ S I E+S+ I+ + D D + L V +++ATPGR++D + +G
Sbjct: 123 LALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLME--KGV 180
Query: 194 T-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
+EH LV+DE D+LL + +Q L ++ + +
Sbjct: 181 AKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQ 218
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 191 (72.3 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 55/177 (31%), Positives = 83/177 (46%)
Query: 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322
P R V M+ SAT Q +H P + E L + Y + K K
Sbjct: 214 PKERQV-MLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLG--VTQYYAFVQEKQKVHC 270
Query: 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382
L L + L + I+F +S + L + G I +S + Q+ R++ FR
Sbjct: 271 LNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYI--HSKMA-QNHRNRVFHDFR 327
Query: 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439
+G + LV SD +TRG+D++ VN V+N+D P +TY+HR GR+ R G LG L+
Sbjct: 328 QGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLI 384
Score = 147 (56.8 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 33/115 (28%), Positives = 63/115 (54%)
Query: 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93
CL L + + G P+Q A +IG L +D+ + G+GKT +Y +P+++
Sbjct: 49 CLGRDLLMGIFEKGWEKPSPIQEA----SIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ A++ ++A+V++PTR+LALQ + ++ + L V + G + + D+I L
Sbjct: 105 IQP-ALKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRL 158
Score = 107 (42.7 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193
LA+ S I E+S+ I+ + D D + L V +++ATPGR++D + +G
Sbjct: 123 LALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLME--KGV 180
Query: 194 T-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
+EH LV+DE D+LL + +Q L ++ + +
Sbjct: 181 AKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQ 218
>RGD|727929 [details] [associations]
symbol:Ddx24 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 24"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:727929 GO:GO:0005524
GO:GO:0005737 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH473982 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
CTD:57062 HOGENOM:HOG000290702 HOVERGEN:HBG104200 OMA:DQQEERR
GeneTree:ENSGT00550000074847 OrthoDB:EOG45TCMP EMBL:BC097262
EMBL:AY341876 IPI:IPI00200634 RefSeq:NP_954550.1 UniGene:Rn.100166
Ensembl:ENSRNOT00000012256 GeneID:373065 KEGG:rno:373065
UCSC:RGD:727929 InParanoid:Q6VEU8 NextBio:692388
Genevestigator:Q6VEU8 Uniprot:Q6VEU8
Length = 851
Score = 216 (81.1 bits), Expect = 5.1e-23, Sum P(4) = 5.1e-23
Identities = 79/274 (28%), Positives = 128/274 (46%)
Query: 174 DILVATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231
+I++ATPGRL + I L L LV+DE DR++ + + A L +L++ N++
Sbjct: 433 EIVIATPGRLWELIKEKHPHLSNLRQLRCLVIDEADRMVEKDHFAELSQLLEML---NDS 489
Query: 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291
+++ L F + T+ R K + KM +A L K+
Sbjct: 490 QYNPNRQTL--VFSATLTLVHQAPARILHKK---HVKKMDKTAKLDLLMQKIGMRGKPKV 544
Query: 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQSLGEEKCIVFTSSVESTHRLCT 350
+ LT E E L K+ CE+ K LYL L+Q G + +VF +S+ RL
Sbjct: 545 IDLTRNEGTV---ETLTETKIHCETDEKDLYLYYFLMQYPG--RSLVFANSISCIKRLSG 599
Query: 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410
LL + + + Q R + L+ F + VL+++D RG+D+ V +V++Y
Sbjct: 600 LLKVLDIMPLTLH---ACMHQKQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHY 656
Query: 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
P + YIHR+GRTARA G L+ ++V
Sbjct: 657 QVPRTSEIYIHRSGRTARATSEGLSLMLIGPEDV 690
Score = 81 (33.6 bits), Expect = 5.1e-23, Sum P(4) = 5.1e-23
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R L LV+ PTR+LA+QV+ A+A G++ + VG S + L + P++
Sbjct: 380 RPLLGLVLTPTRELAVQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEI 434
Score = 79 (32.9 bits), Expect = 5.1e-23, Sum P(4) = 5.1e-23
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 42 ALQNMGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTL 94
AL +G S+ P+Q T+ P + ++ D+ + TGSGKTL++A+P++ ++
Sbjct: 206 ALSFLGFSAPTPIQAL----TLAPAIRDKLDILGAAETGSGKTLAFAIPMIHSV 255
Score = 50 (22.7 bits), Expect = 5.1e-23, Sum P(4) = 5.1e-23
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 5 KKKSMPVL-PWMRSPVDVSLFEDCPLDHLPCLD 36
++K + V+ W + +D +LF D +D L C +
Sbjct: 19 QRKGIKVVGKWKQVTIDPNLFADGQMDDLVCFE 51
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 232 (86.7 bits), Expect = 6.3e-23, Sum P(2) = 6.3e-23
Identities = 69/224 (30%), Positives = 108/224 (48%)
Query: 228 DNENRFSDASTFLPSAFGSLKTIRRCGV-----ERGFKDKPYPRLVKMVLSATLTQDPNK 282
D +R D F P G L + + E +K R M SAT+ +
Sbjct: 470 DEADRMIDMG-FEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYM-FSATMPPGVER 527
Query: 283 LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 342
LA+ L +P+ +T G T K + + + ++ + K L LL LGE+ IVF ++
Sbjct: 528 LARKYLRNPVVVTIG-TAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTK 586
Query: 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 402
++ + L+ G ++ G + Q R +L+ FR + VLV++D + RG+D+
Sbjct: 587 KNCDSIAKNLDKAG---YRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIP 643
Query: 403 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLG--RCFTLLHKDEV 444
V +V+NYD P +I+ Y HR GRT RAG+ G F LH EV
Sbjct: 644 DVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEV 687
Score = 110 (43.8 bits), Expect = 6.3e-23, Sum P(2) = 6.3e-23
Identities = 41/166 (24%), Positives = 78/166 (46%)
Query: 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI- 124
GL +RD+ + TGSGKT ++ LP++ +S LP + + +A +
Sbjct: 347 GLQQRDVIGIAETGSGKTAAFVLPMLAYISR-----------LPPMSEENETEGPYAVVM 395
Query: 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184
AP L+ + A + + + G + + + ++ +I++ATPGRL+
Sbjct: 396 APTRELAQQIEEETVKFAHYLG--FRVTSIVGGQSIEEQGL--KITQGCEIVIATPGRLI 451
Query: 185 DHINATRGFTLEHLC-YLVVDETDRLLREAYQAWLPTVLQLTRSDN 229
D + R + + + C Y+V+DE DR++ ++ + VL S N
Sbjct: 452 DCLE--RRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSN 495
Score = 109 (43.4 bits), Expect = 8.0e-23, Sum P(2) = 8.0e-23
Identities = 36/117 (30%), Positives = 57/117 (48%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
L L A++ G P+Q+A I GL +RD+ + TGSGKT ++ LP++ +
Sbjct: 320 LTSELLKAVERAGYKKPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYI 375
Query: 95 SN-------RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144
S A+V+ PTR+LA Q+++ A +G V VG SI ++
Sbjct: 376 SRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQ 432
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 178 (67.7 bits), Expect = 7.1e-23, Sum P(3) = 7.1e-23
Identities = 51/197 (25%), Positives = 92/197 (46%)
Query: 255 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ +GFK++ Y P ++LSATL + ++ + P+ + L
Sbjct: 181 LNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIK 240
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ + + + K L+ L +L + ++F ++ ++ L + E + G
Sbjct: 241 QFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNT---RRKVDWLTDKMKEANFTVSSMHG 297
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R + +K FR G +VL+S+D RG+DV V+ V+NYD P + YIHR GR+
Sbjct: 298 DMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSG 357
Query: 428 RAGQLGRCFTLLHKDEV 444
R G+ G + +D+V
Sbjct: 358 RFGRKGVAINFVKQDDV 374
Score = 129 (50.5 bits), Expect = 7.1e-23, Sum P(3) = 7.1e-23
Identities = 27/92 (29%), Positives = 57/92 (61%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I L RD+ + +G+GKT ++++ ++Q+L + VR +AL++ PTR+LA+Q
Sbjct: 51 AIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQ-VRETQALILSPTRELAVQ 109
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
++ V A+ + + +G +++ ++I +L
Sbjct: 110 IQKVVLALGDYMNVQCHACIGGTNLGEDIRKL 141
Score = 67 (28.6 bits), Expect = 7.1e-23, Sum P(3) = 7.1e-23
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 218
ED+ ++L ++ TPGR+ D I R + LV+DE D +L + ++ L
Sbjct: 136 EDI-RKLDYGQHVVSGTPGRVFDMIRR-RNLRTRAIKLLVLDEADEMLNKGFKEQL 189
>UNIPROTKB|E2QSR5 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
Ensembl:ENSCAFT00000014352 Uniprot:E2QSR5
Length = 912
Score = 196 (74.1 bits), Expect = 7.2e-23, Sum P(3) = 7.2e-23
Identities = 55/177 (31%), Positives = 91/177 (51%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SATL + + A+ L P+ + + KL E+L++ + K L+ LL++
Sbjct: 273 VLFSATLPKLLVEFARAGLTEPVLIRL-DVDAKLNEQLKTSFFLVREDTKAAVLLHLLRT 331
Query: 330 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387
+ +++ +VF ++ L LL G I YS L Q+ R L F K
Sbjct: 332 VVRPQDQTVVFVATKHHAEYLSELLTTQGVSCTHI--YSALD-QTARKINLAKFTHNKCS 388
Query: 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
L+ +D RG+D+ ++NV+NY PA K ++HR GR ARAG+ G ++L+ DEV
Sbjct: 389 ALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEV 445
Score = 125 (49.1 bits), Expect = 7.2e-23, Sum P(3) = 7.2e-23
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC-LRALVVLPT 110
+ V + ++TI L +D+ + TGSGKT + +P+ + L + + RAL++ PT
Sbjct: 116 YKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFERLKTHSAQTGARALILSPT 175
Query: 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154
R+LALQ + GL L +G + D+ + L + P +
Sbjct: 176 RELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHENPDI 219
Score = 69 (29.3 bits), Expect = 7.2e-23, Sum P(3) = 7.2e-23
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
ED L DI++ATPGRL+ H+ L+ + Y VD D L + L ++
Sbjct: 207 EDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEY--VDSIDWLFEMGFAEQLQEII 263
>POMBASE|SPAC22F3.08c [details] [associations]
symbol:rok1 "ATP-dependent RNA helicase Rok1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC22F3.08c GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000242486 KO:K14779
PIR:T38183 RefSeq:NP_593033.1 ProteinModelPortal:Q09775
STRING:Q09775 EnsemblFungi:SPAC22F3.08c.1 GeneID:2541786
KEGG:spo:SPAC22F3.08c OMA:ERESINT OrthoDB:EOG425926
NextBio:20802875 Uniprot:Q09775
Length = 481
Score = 213 (80.0 bits), Expect = 7.7e-23, Sum P(2) = 7.7e-23
Identities = 54/179 (30%), Positives = 92/179 (51%)
Query: 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326
+ K + SAT+ +LA++ P+ + G + + ++ L S + ++
Sbjct: 222 ICKSLFSATIPSRVEELAKVVTVDPIRIIVG-LKDAATDSIDQRLLFVGSDTSKIVILRQ 280
Query: 327 LQSLGEEK--CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
+ S GE K ++F +E L T L F E+ + + G Q+ R + L FR+G
Sbjct: 281 MISNGELKPRVVIFVQDIERAKALYTELL-FDEIHVGV--IHGELPQAKREEALAKFRKG 337
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
+I VL+++D + RG+D GV V+N+D P + +YIHR GRT RAG G+ T K++
Sbjct: 338 EIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKED 396
Score = 123 (48.4 bits), Expect = 7.7e-23, Sum P(2) = 7.7e-23
Identities = 38/115 (33%), Positives = 62/115 (53%)
Query: 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121
TIG +RDL +PTGSGKT++Y PI+Q L RA++V PTR+L Q+
Sbjct: 79 TIGS---KRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQA 135
Query: 122 AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEA--GICYD-PEDVLQELQSAV 173
++ L + + + +S+ ++I E K PKL +C P ++Q +Q+ +
Sbjct: 136 EKLSFGTSLKI-IELSKSN--EKIQE--KAPKLREKYDMCIGTPMRLVQAIQTGL 185
Score = 72 (30.4 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 168 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227
+L+ D+ + TP RL+ I G + E + + V+DE DRL + +L S
Sbjct: 162 KLREKYDMCIGTPMRLVQAIQT--GLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTS 219
Query: 228 DNENRFSDASTFLPSAFGSLKTI 250
N + ++T +PS L +
Sbjct: 220 SNICKSLFSAT-IPSRVEELAKV 241
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 221 (82.9 bits), Expect = 8.3e-23, Sum P(2) = 8.3e-23
Identities = 55/180 (30%), Positives = 99/180 (55%)
Query: 270 MVLSATLTQDPNKL-AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328
M+ SATL +L A+ L+ P+FL + +R + + L ++ K LV L+
Sbjct: 194 MLFSATLESPGVQLFAEEVLNEPVFLESKPSRKEKAVIHQWLHLADDANHKLNLLVNTLK 253
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
G E+ +VF + E+ L L + E + G Q R+K ++ F++G+++V
Sbjct: 254 QEGVERTVVFANKRETVQYLSGKL--YAE-ELPCVWLEGKMPQDKRNKAIERFKKGEVKV 310
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVG 448
LV++D RG+D++ +++V+N+D P + YIHR GRT RAG+ G +L+ ++ ++G
Sbjct: 311 LVATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIG 370
Score = 111 (44.1 bits), Expect = 8.3e-23, Sum P(2) = 8.3e-23
Identities = 31/107 (28%), Positives = 55/107 (51%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQT 93
LD L ++ +G + P + QE + P + +D+ ++PTG+GKT ++ LPI Q
Sbjct: 20 LDSELLASINKIGYTK--PTSI---QELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74
Query: 94 LSN--RAVRCL-RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137
L + R R L++ PTR+LA+Q+ + + + G+ G
Sbjct: 75 LLDYPRTKPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITG 121
Score = 107 (42.7 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 132 VGLAVGQSSIADEISEL--IKRPKLEAGICYDPE-DVLQELQSAVDILVATPGRLMDHIN 188
+ + +G+ S ++++EL IK + G+ Y D+L S DILVATPGRL+++I
Sbjct: 97 LAIQIGEDS--EQLTELTKIKTGVITGGVNYGSHADILT---STTDILVATPGRLLEYIE 151
Query: 189 ATRGFTLEHLCYLVVDETDRLL 210
+ F + LV+DE DR+L
Sbjct: 152 NEQ-FDAREIEILVLDEADRML 172
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 178 (67.7 bits), Expect = 9.0e-23, Sum P(3) = 9.0e-23
Identities = 51/197 (25%), Positives = 92/197 (46%)
Query: 255 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ +GFK++ Y P ++LSATL + ++ + P+ + L
Sbjct: 181 LNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIK 240
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ + + + K L+ L +L + ++F ++ ++ L + E + G
Sbjct: 241 QFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNT---RRKVDWLTDKMKEANFTVSSMHG 297
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R + +K FR G +VL+S+D RG+DV V+ V+NYD P + YIHR GR+
Sbjct: 298 DMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSG 357
Query: 428 RAGQLGRCFTLLHKDEV 444
R G+ G + +D+V
Sbjct: 358 RFGRKGVAINFVKQDDV 374
Score = 128 (50.1 bits), Expect = 9.0e-23, Sum P(3) = 9.0e-23
Identities = 26/92 (28%), Positives = 57/92 (61%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q + L RD+ + +G+GKT ++++ ++Q+L + VR +AL++ PTR+LA+Q
Sbjct: 51 AIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQ-VRETQALILSPTRELAVQ 109
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
++ V A+ + + +G +++ ++I +L
Sbjct: 110 IQKVVLALGDYMNVQCHACIGGTNLGEDIRKL 141
Score = 67 (28.6 bits), Expect = 9.0e-23, Sum P(3) = 9.0e-23
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL 218
ED+ ++L ++ TPGR+ D I R + LV+DE D +L + ++ L
Sbjct: 136 EDI-RKLDYGQHVVSGTPGRVFDMIRR-RNLRTRAIKLLVLDEADEMLNKGFKEQL 189
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 221 (82.9 bits), Expect = 9.6e-23, Sum P(2) = 9.6e-23
Identities = 62/181 (34%), Positives = 91/181 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SAT T+ LA+L L +P ++ E +Y P LE ++CE + K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLR 309
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 386
S ++K IVF SS + L + F LR + I G Q+Q R + F +
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRV---FCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRA 366
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCL 446
VL ++D RG+D VN V+ +D P TYIHRAGRTAR + G +L E +
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAM 426
Query: 447 V 447
V
Sbjct: 427 V 427
Score = 122 (48.0 bits), Expect = 9.6e-23, Sum P(2) = 9.6e-23
Identities = 35/119 (29%), Positives = 60/119 (50%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 114
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173
Q +V + S GL +G + E +E I + +C P +LQ + V
Sbjct: 155 YQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINN--INILVC-TPGRLLQHMDETV 209
Score = 106 (42.4 bits), Expect = 4.5e-21, Sum P(2) = 4.5e-21
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 150 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 225
Query: 208 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
R+L + + V++ L + FS T
Sbjct: 226 RILDMGFADTMNAVIENLPKKRQTLLFSATQT 257
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 165 (63.1 bits), Expect = 9.8e-23, Sum P(3) = 9.8e-23
Identities = 54/199 (27%), Positives = 96/199 (48%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPL--FLTT-GETRYKLP 304
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ LT G ++ +
Sbjct: 188 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRIXLTLEGIRQFYIN 247
Query: 305 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKE 364
E +KL L LY ++L + ++F ++ L + H + +
Sbjct: 248 VEREEWKL---DTLCDLY-----ETLTITQAVIFINTRRKVDWLTEKM-HARDFTVSAMH 298
Query: 365 YSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424
G Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR G
Sbjct: 299 --GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIG 356
Query: 425 RTARAGQLGRCFTLLHKDE 443
R R G+ G ++ +++
Sbjct: 357 RGGRFGRKGVAINMVTEED 375
Score = 128 (50.1 bits), Expect = 9.8e-23, Sum P(3) = 9.8e-23
Identities = 30/102 (29%), Positives = 59/102 (57%)
Query: 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116
A+ Q I P + D+ + +G+GKT ++A+ I+Q + ++ +ALV+ PTR+LA Q
Sbjct: 57 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-LDLKATQALVLAPTRELAQQ 115
Query: 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPKLEAG 157
++ V A+ +G S +G +++ E+ +L ++ P + G
Sbjct: 116 IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 157
Score = 82 (33.9 bits), Expect = 9.8e-23, Sum P(3) = 9.8e-23
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 166 LQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224
+Q+LQ A I+V TPGR+ D +N R + +++ V+DE D +L ++ + + Q
Sbjct: 144 VQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 202
Query: 225 TRSDNE 230
S+ +
Sbjct: 203 LNSNTQ 208
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 195 (73.7 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 46/129 (35%), Positives = 68/129 (52%)
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ K K L L+ S ++ +VFT + + + L L G IK +G + Q R
Sbjct: 234 DKKRKRELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDG---IKAVSINGDKSQGAR 290
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
K L F+ GK++ L+++D RG+D+ + VVNYD P + Y+HR GRT RAG G
Sbjct: 291 QKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGL 350
Query: 435 CFTLLHKDE 443
+LL DE
Sbjct: 351 AVSLLSHDE 359
Score = 139 (54.0 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 39/120 (32%), Positives = 64/120 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD RL L +GI++ P+Q Q+ I L +D+ + TG+GKT ++ LP++Q
Sbjct: 13 LDSRLLNTLSELGIANPTPIQ----QQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRF 68
Query: 95 SNRA------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ + +RALV++PTR+LA QV D A A L + G +S+ +++ L
Sbjct: 69 IEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHL 128
Score = 124 (48.7 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 52/186 (27%), Positives = 83/186 (44%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ Q+ I L +D+ + TG+GKT ++ LP++Q + P + A
Sbjct: 32 IQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQ-----------PWQREA-NS 79
Query: 118 KDVFAAI-APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV---LQELQSAV 173
K++ A + P L+ + D + K +L+ Y + L L+ V
Sbjct: 80 KEIRALVLVPTRELA-------QQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGV 132
Query: 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 233
DIL+ATPGRL+DH + F L + LV+DE DR+L + L VL+ + F
Sbjct: 133 DILIATPGRLLDHAHVKSLF-LGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLF 191
Query: 234 SDASTF 239
A TF
Sbjct: 192 FSA-TF 196
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 195 (73.7 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 46/129 (35%), Positives = 68/129 (52%)
Query: 315 ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374
+ K K L L+ S ++ +VFT + + + L L G IK +G + Q R
Sbjct: 234 DKKRKRELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDG---IKAVSINGDKSQGAR 290
Query: 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434
K L F+ GK++ L+++D RG+D+ + VVNYD P + Y+HR GRT RAG G
Sbjct: 291 QKALDDFKAGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGL 350
Query: 435 CFTLLHKDE 443
+LL DE
Sbjct: 351 AVSLLSHDE 359
Score = 139 (54.0 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 39/120 (32%), Positives = 64/120 (53%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
LD RL L +GI++ P+Q Q+ I L +D+ + TG+GKT ++ LP++Q
Sbjct: 13 LDSRLLNTLSELGIANPTPIQ----QQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRF 68
Query: 95 SNRA------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+ + +RALV++PTR+LA QV D A A L + G +S+ +++ L
Sbjct: 69 IEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHL 128
Score = 124 (48.7 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 52/186 (27%), Positives = 83/186 (44%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117
+ Q+ I L +D+ + TG+GKT ++ LP++Q + P + A
Sbjct: 32 IQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQ-----------PWQREA-NS 79
Query: 118 KDVFAAI-APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV---LQELQSAV 173
K++ A + P L+ + D + K +L+ Y + L L+ V
Sbjct: 80 KEIRALVLVPTRELA-------QQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGV 132
Query: 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRF 233
DIL+ATPGRL+DH + F L + LV+DE DR+L + L VL+ + F
Sbjct: 133 DILIATPGRLLDHAHVKSLF-LGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLF 191
Query: 234 SDASTF 239
A TF
Sbjct: 192 FSA-TF 196
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 221 (82.9 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 62/181 (34%), Positives = 91/181 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SAT T+ LA+L L +P ++ E +Y P LE ++CE + K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLR 309
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 386
S ++K IVF SS + L + F LR + I G Q+Q R + F +
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRV---FCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRA 366
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCL 446
VL ++D RG+D VN V+ +D P TYIHRAGRTAR + G +L E +
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAM 426
Query: 447 V 447
V
Sbjct: 427 V 427
Score = 122 (48.0 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 35/119 (29%), Positives = 60/119 (50%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 114
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173
Q +V + S GL +G + E +E I + +C P +LQ + V
Sbjct: 155 YQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINN--INILVC-TPGRLLQHMDETV 209
Score = 106 (42.4 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 150 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 225
Query: 208 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
R+L + + V++ L + FS T
Sbjct: 226 RILDMGFADTMNAVIENLPKKRQTLLFSATQT 257
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 178 (67.7 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 52/184 (28%), Positives = 83/184 (45%)
Query: 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 316
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 259 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCME 318
Query: 317 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
K L+ L++ + E K I+F + L + G + I G + Q
Sbjct: 319 SEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIH---GDKSQPE 375
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R L FR GK +L+++D +RG+DVE V V+NYD P + Y+HR GRTAR+ G
Sbjct: 376 RDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKG 435
Query: 434 RCFT 437
+T
Sbjct: 436 TAYT 439
Score = 114 (45.2 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 29/99 (29%), Positives = 52/99 (52%)
Query: 134 LAVGQSSIADEISEL--IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 191
LA +AD+ + +K + G P+ +++L+ V+I +ATPGRL+D + A +
Sbjct: 175 LAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQ--IRDLERGVEICIATPGRLIDFLEAGK 232
Query: 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
L YLV+DE DR+L ++ + ++ R D +
Sbjct: 233 T-NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 270
Score = 86 (35.3 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 36/125 (28%), Positives = 56/125 (44%)
Query: 1 MEEAKKKSMPVLPWMRS-PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVW 59
+EE ++K + M P V F C +D AL + + P+Q
Sbjct: 68 VEELRRKKEITIRGMEGCPKPVFAFHQCSFPQY-VMD-----ALMDQNFTEPTPIQC--- 118
Query: 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR----ALVVLPTRDLAL 115
+ L RD+ + TGSGKTL+Y LP + ++++ LV+ PTR+LA
Sbjct: 119 -QGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQ 177
Query: 116 QVKDV 120
QV+ V
Sbjct: 178 QVQQV 182
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 172 (65.6 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 49/175 (28%), Positives = 89/175 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-LPERLESYKLICESKLKPLYLVALLQ 328
++ SAT + L Q L++P+ + L +R+ + + + + K L L+Q
Sbjct: 196 LLFSATFPEQVTTLTQELLNNPIEIQLQSADASTLVQRVFT---VNKGE-KTAVLAHLIQ 251
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ ++F V + H L + I + G + QS RS+ L F+ G I+V
Sbjct: 252 QEQWRQALIF---VNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEV 308
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL-HKD 442
L+++D RG+D+E + V+N++ P Y+HR GR+ RAG++G +L+ H+D
Sbjct: 309 LIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHED 363
Score = 164 (62.8 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 62/184 (33%), Positives = 90/184 (48%)
Query: 65 PGLFE-RDLCINSPTGSGKTLSYALPIVQTL--------SNRAVRCLRALVVLPTRDLAL 115
P +F RDL + TGSGKT ++ALP++Q L N + LV++PTR+LA
Sbjct: 40 PSVFAGRDLIAGANTGSGKTATFALPMLQKLREDISSGSKNSKGNFVTGLVLVPTRELAK 99
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175
QV D S+ S A + IK + G+ + + + L+ VDI
Sbjct: 100 QVAD-----------SI------KSYAVHFNGEIKTLAVFGGVSVNIQ--MLALRGGVDI 140
Query: 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 235
LVATPGRL+D I++ L+ + LV+DE DR+L + L +L LT +
Sbjct: 141 LVATPGRLLDLISSN-AIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPKKKQTLLFS 199
Query: 236 ASTF 239
A TF
Sbjct: 200 A-TF 202
>SGD|S000000346 [details] [associations]
symbol:MAK5 "Essential nucleolar protein" species:4932
"Saccharomyces cerevisiae" [GO:0000466 "maturation of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=IMP]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000000346 GO:GO:0005524 GO:GO:0005730
EMBL:BK006936 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000463 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000466 KO:K14805
HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847 EMBL:X78937
OrthoDB:EOG44J5S7 EMBL:Z36011 PIR:S46011 RefSeq:NP_009700.1
ProteinModelPortal:P38112 SMR:P38112 DIP:DIP-6337N IntAct:P38112
MINT:MINT-612928 STRING:P38112 PaxDb:P38112 PeptideAtlas:P38112
EnsemblFungi:YBR142W GeneID:852439 KEGG:sce:YBR142W CYGD:YBR142w
OMA:HLPRAAD NextBio:971336 Genevestigator:P38112 GermOnline:YBR142W
Uniprot:P38112
Length = 773
Score = 290 (107.1 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 117/444 (26%), Positives = 211/444 (47%)
Query: 20 DVSLFEDCPLDHLP---CLDPRLKVALQNM-GISSLFPVQVAVWQETIGPGLFER-DLCI 74
D+++ + P++ LP L P LQ++ ++ L P ++ +++I P + + D+
Sbjct: 158 DINIDDISPVN-LPEWTNLAPLSMTILQSLQNLNFLRPTEIQ--KKSI-PVIMQGVDVMG 213
Query: 75 NSPTGSGKTLSYALPIVQTL-SNRAVRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLS 131
+ TGSGKTL+Y +PIV+ L SN + + + +L+ PTR+LA QV D I V
Sbjct: 214 KASTGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFTPTRELAHQVTDHLKKICEPV--- 270
Query: 132 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 191
LA Q SI L G+ + L + ++ I++ATPGR ++ +
Sbjct: 271 --LAKSQYSILS----------LTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDN 318
Query: 192 GFT--LEHLCYLVVDETDRLLREA----YQAWLPTVLQLTRSDNENRFSDAS---TFLPS 242
+ L++DE DRLL++ ++ + +L R + EN + T + S
Sbjct: 319 TLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIWQTLIFS 378
Query: 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK 302
A S+ + R KD+ + + L+A + +K+ + P+ + T K
Sbjct: 379 ATFSIDLFDKLSSSRQVKDRRFKNN-EDELNAVIQHLMSKI-HFN-SKPVIIDTNPES-K 434
Query: 303 LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG--ELRI 360
+ +++ + C + LY L ++ ++F ++++S +L LN+ G +I
Sbjct: 435 VSSQIKESLIECPPLERDLYCYYFL-TMFPGTTLIFCNAIDSVKKLTVYLNNLGIPAFQI 493
Query: 361 --------KIKEYSGLQRQSVRSKTLKAFREGKIQ---VLVSSDAMTRGMDVEGVNNVVN 409
++K ++QS + KT+ +Q VL++SD RG+D+ GV +V++
Sbjct: 494 HSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAARGLDIPGVQHVIH 553
Query: 410 YDKPAYIKTYIHRAGRTARAGQLG 433
Y P YIHR+GRTARAG G
Sbjct: 554 YHLPRSTDIYIHRSGRTARAGSEG 577
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 185 (70.2 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 50/186 (26%), Positives = 94/186 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT+ + A+ L P+ + G L+ + + S+ K + ++ LQ
Sbjct: 381 LLFSATMPRKIQFFAKSALVKPIVVNVGRAGAASLNVLQELEFV-RSENKLVRVLECLQK 439
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
K ++F + L G +++ G + QS R ++AFR+ + VL
Sbjct: 440 TSP-KVLIFAEKKVDVDNIYEYLLVKG---VEVASIHGGKDQSDRHAGIEAFRKNEKDVL 495
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK-DEVCLVG 448
V++D ++G+D +G+ +V+N+D P I+ Y+HR GRT R+G+ G T ++K E+ ++
Sbjct: 496 VATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLS 555
Query: 449 CLTPLL 454
L LL
Sbjct: 556 DLKQLL 561
Score = 155 (59.6 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 58/227 (25%), Positives = 107/227 (47%)
Query: 27 CPLDHLP-----CLDPRL-KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGS 80
C DH+P L+ + K L+ M A+ + I L RD+ + TGS
Sbjct: 179 CEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGS 238
Query: 81 GKTLSYALPIVQTLSNRAVRC--LRA-----LVVLPTRDLALQVKDVFAAIAPAVGLSVG 133
GKT+++ LP+V + ++ +R+ L+++P+R+LA Q+ D+ + A+G G
Sbjct: 239 GKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALG-KAG 297
Query: 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDV---LQELQSAVDILVATPGRLMDHINAT 190
L P++ AG+C + ++++ + I+VATPGRL D +
Sbjct: 298 L-----------------PEMRAGLCIGGVPIGEQAKDVRDGIHIVVATPGRLSDMLTK- 339
Query: 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
+ LE YLV+DE DR+L ++ + ++ ++ + A+
Sbjct: 340 KIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSAT 386
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 193 (73.0 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 47/175 (26%), Positives = 88/175 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
++ SAT +LA+ L P+ + G ++ L + K Y+ +
Sbjct: 460 VMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIHR 519
Query: 330 LGE-EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
+ +K ++F L + L G I ++ G + Q R + L+ F++G++++
Sbjct: 520 MEPLDKVLIFVGKKLKADDLSSDLCLQG---IAVQSLHGDREQCDREEALQDFKDGRVRI 576
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
LV++D +RG+DV + +V NYD P ++ Y+HR GRT RAG+ G TL+ +++
Sbjct: 577 LVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTRED 631
Score = 104 (41.7 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
++ + S VDI++ATPGRL D + L + YLV+DE DR+L ++ + ++
Sbjct: 395 IKVVTSGVDIVIATPGRLND-LQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDI 453
Query: 226 RSDNENRFSDAS 237
R D + + A+
Sbjct: 454 RPDRQTVMTSAT 465
Score = 85 (35.0 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96
P + + +G P+Q W + G+ DL + TG+GKTL+Y LP +
Sbjct: 287 PGIMENIVRVGFKKPTPIQSQAWPVVLN-GI---DLIGIAQTGTGKTLAYLLPGFIHMDG 342
Query: 97 RAV-RCLR----ALVVLPTRDLALQVK 118
+ + R R LV+ PTR+LALQ++
Sbjct: 343 QPMPRDKRNGPGMLVLTPTRELALQIE 369
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 214 (80.4 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 63/194 (32%), Positives = 100/194 (51%)
Query: 255 VERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL-ESYKLI 313
VER + P + V + SAT+ KL+ LH P F T + + + E + +SY +
Sbjct: 177 VERILSETPEYKQVAL-FSATMPPAIRKLSAKYLHDP-FEVTCKAKTAVAENISQSYIQV 234
Query: 314 CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
K+ L V ++ E IVF + ++T + L G I SG Q+
Sbjct: 235 AR-KMDALTRVLEVEPF--EAMIVFVRTKQATEEIAEKLRARGFSAAAI---SGDVPQAQ 288
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R +T+ A R+G I +LV++D RG+DVE +++V+NYD P ++Y+HR GRT RAG+ G
Sbjct: 289 RERTITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSG 348
Query: 434 RCFTLLHKDEVCLV 447
+ E+ L+
Sbjct: 349 AALIFVSPRELHLL 362
Score = 121 (47.7 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 52/194 (26%), Positives = 96/194 (49%)
Query: 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93
+ PR+ A+ ++G S +Q A TI P L D+ + TG+GKT ++A+P++
Sbjct: 20 IHPRVLRAIGDVGYESPTAIQAA----TI-PALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74
Query: 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRP 152
+ + + +ALV++PTR+LALQV + F + L+V G SS A +++ L +
Sbjct: 75 IDITS-KVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133
Query: 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA--TRGFTLEHLCYLVVDETDRLL 210
++ G P ++ L+ A L ++D + T GF + ++ ET
Sbjct: 134 QVVVGT---PGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADD--VERILSETPEYK 188
Query: 211 REA-YQAWLPTVLQ 223
+ A + A +P ++
Sbjct: 189 QVALFSATMPPAIR 202
Score = 88 (36.0 bits), Expect = 5.3e-19, Sum P(2) = 5.3e-19
Identities = 30/122 (24%), Positives = 55/122 (45%)
Query: 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE 163
A+ +L D+ +V + P L++ +A +S+L P + G Y +
Sbjct: 68 AIPMLSKIDITSKVPQALVLV-PTRELALQVAEAFGRYGAYLSQLNVLP-IYGGSSYAVQ 125
Query: 164 DVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
L L+ ++V TPGR++DH+ L + +LV+DE D +L + + +L
Sbjct: 126 --LAGLRRGAQVVVGTPGRMIDHLERAT-LDLSRVDFLVLDEADEMLTMGFADDVERILS 182
Query: 224 LT 225
T
Sbjct: 183 ET 184
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 180 (68.4 bits), Expect = 2.2e-22, Sum P(3) = 2.2e-22
Identities = 54/198 (27%), Positives = 93/198 (46%)
Query: 255 VERGFKDKPY-------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGF+++ Y P +V+SATL D + + P+ + L E +
Sbjct: 180 LNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTL-EGI 238
Query: 308 ESYKLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366
+ Y + E + K L L +L + ++F ++ ++ L + E +
Sbjct: 239 KQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNT---RRKVDWLTDKMREANFTVSSMH 295
Query: 367 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426
G Q R ++ FR+G +VL+S+D RG+DV+ V+ V+NYD P + YIHR GR+
Sbjct: 296 GEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRS 355
Query: 427 ARAGQLGRCFTLLHKDEV 444
R G+ G + D+V
Sbjct: 356 GRFGRKGVAINFVTSDDV 373
Score = 115 (45.5 bits), Expect = 2.2e-22, Sum P(3) = 2.2e-22
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129
RD + +G+GKT ++++ +Q + VR +ALV+ PTR+LA Q++ V A+ +
Sbjct: 63 RDTIAQAQSGTGKTATFSISALQVIDT-VVRETQALVLSPTRELATQIQSVIMALGDYMN 121
Query: 130 LSVGLAVGQSSIADEISEL 148
+ +G ++I ++I +L
Sbjct: 122 VQCHACIGGTNIGEDIRKL 140
Score = 74 (31.1 bits), Expect = 2.2e-22, Sum P(3) = 2.2e-22
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215
ED+ ++L ++ TPGR+ D I R H+ LV+DE D LL ++
Sbjct: 135 EDI-RKLDYGQHVVSGTPGRVADMIRR-RHLRTRHIKMLVLDEADELLNRGFR 185
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 169 (64.5 bits), Expect = 2.4e-22, Sum P(3) = 2.4e-22
Identities = 50/196 (25%), Positives = 92/196 (46%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 189 LSRGFKDQIYEIFQKLSTNIQVVLLSATMPMDVLEVTKKFMREPIRILVKKEELTLEGIK 248
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 249 QFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKM-HARDFTVSALH--G 305
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 306 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 365
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G + +++
Sbjct: 366 RFGRKGVAINFVTEED 381
Score = 127 (49.8 bits), Expect = 2.4e-22, Sum P(3) = 2.4e-22
Identities = 37/124 (29%), Positives = 68/124 (54%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D LK +L GI + F A+ Q I P + D+ + +G+GKT ++A+ I+Q L
Sbjct: 37 DMNLKESLLR-GIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 95
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPK 153
++ +ALV+ PTR+LA Q++ V A+ +G + +G +++ +E+ +L + P
Sbjct: 96 EID-LKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPH 154
Query: 154 LEAG 157
+ G
Sbjct: 155 IVVG 158
Score = 75 (31.5 bits), Expect = 2.4e-22, Sum P(3) = 2.4e-22
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 166 LQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
+Q+LQ+ A I+V TPGR+ D +N R + + + V+DE D +L ++ + + Q
Sbjct: 145 MQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
>SGD|S000005321 [details] [associations]
symbol:DBP6 "Essential protein involved in ribosome
biogenesis" species:4932 "Saccharomyces cerevisiae" [GO:0000463
"maturation of LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0030687
"preribosome, large subunit precursor" evidence=IDA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0000466
"maturation of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000005321
GO:GO:0005524 GO:GO:0005730 EMBL:BK006947 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513 GO:GO:0000466 KO:K14807
HOGENOM:HOG000203294 OrthoDB:EOG490BK3 EMBL:Z71653 PIR:S63369
RefSeq:NP_014436.1 ProteinModelPortal:P53734 SMR:P53734
IntAct:P53734 MINT:MINT-2731978 STRING:P53734 PaxDb:P53734
PeptideAtlas:P53734 PRIDE:P53734 EnsemblFungi:YNR038W GeneID:855774
KEGG:sce:YNR038W CYGD:YNR038w GeneTree:ENSGT00550000075141
OMA:SSREYVH NextBio:980232 Genevestigator:P53734 GermOnline:YNR038W
Uniprot:P53734
Length = 629
Score = 286 (105.7 bits), Expect = 2.4e-22, P = 2.4e-22
Identities = 87/303 (28%), Positives = 151/303 (49%)
Query: 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205
S ++ KLE + D L L+ DIL+ TPGRL+DH+N + L++L +L++DE
Sbjct: 287 SLIVSIAKLENSL-KDEHKKLSNLEP--DILITTPGRLVDHLNM-KSINLKNLKFLIIDE 342
Query: 206 TDRLLREAYQAWLPTVLQLTRSDNENRF-SDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264
DRLL +++Q W P ++ ++D + + + SA + T + G+ +K K +
Sbjct: 343 ADRLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNL-YKPKLF 401
Query: 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYL 323
+K + L Q PNKL + +++ P T ++ YK P L Y IC+ P+
Sbjct: 402 ---LKQ--TDKLYQLPNKLNEFNINIP----TAKSVYK-PLIL-LYS-ICQFMAHSPIAA 449
Query: 324 VALLQSLGEEKCIVFTSSVE---STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380
L+ E I + ++ + ++L + L + I + ++ K +
Sbjct: 450 KILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVAN 509
Query: 381 F----REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436
F I +L+++D M+RG+D+ + V+NYD P + Y+HR GRTARA +LG +
Sbjct: 510 FSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAY 569
Query: 437 TLL 439
LL
Sbjct: 570 NLL 572
Score = 157 (60.3 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 46/179 (25%), Positives = 88/179 (49%)
Query: 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 130
D+ +N+ TGSGKTL+Y++PIVQTL R + LR ++++PT+ L QV + L
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTSL 288
Query: 131 SVGLAVGQSSIADEISELIK-RPKL---EAGICYDPEDVLQ-ELQSAVDILVATPGRLMD 185
V +A ++S+ DE +L P + G D ++ L++ +++ RL++
Sbjct: 289 IVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKSINLKNLKFLIIDEADRLLN 348
Query: 186 HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 244
+ +G+ + + +L D+ D L + + T + N + + + + P F
Sbjct: 349 Q--SFQGWCPKLMSHLKTDKLDTLPGNV----IKMIFSATLTTNTEKLNGLNLYKPKLF 401
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 187 (70.9 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
Identities = 55/177 (31%), Positives = 82/177 (46%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQ 328
M+ SAT T+ LA+L L +P F++ E P L + L K L ++
Sbjct: 220 MLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIR 279
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 386
+ + K IVF SS + + F +R I + G Q+Q+ R++ F +
Sbjct: 280 THLKFKTIVFLSSCKQVR---FVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRH 336
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
VL +D + RG+D V+ V+ D P + TYIHR GRTAR + G LL E
Sbjct: 337 VVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSE 393
Score = 153 (58.9 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
Identities = 53/179 (29%), Positives = 92/179 (51%)
Query: 2 EEAKKKSMPVLPWMRSPVDVSLFEDCPLDH---LPCLDPRLKVALQNMGISSLFPVQVAV 58
E+ +K+ + + S ++ +L E +DH LP P K AL+N +L +Q
Sbjct: 14 EKKRKEEEEEIEELNSQIE-ALSET--VDHFAELPLTQPT-KSALKNAHFITLTEIQ--- 66
Query: 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRALVVLPTRDLAL 115
++ I L RD+ + TGSGKTL++ +P+++ L + ++ L ALV+ PTR+LA+
Sbjct: 67 -KQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAI 125
Query: 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174
Q + I S GL +G ++ +E E + R + +C P +LQ + AV+
Sbjct: 126 QTFETLVKIGRLHSFSAGLIIGGNNYKEE-KERLSRMNIL--VC-TPGRLLQHIDQAVN 180
Score = 100 (40.3 bits), Expect = 8.3e-17, Sum P(2) = 8.3e-17
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 167 QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVL 222
+E S ++ILV TPGRL+ HI+ F L L++DE DR+L ++ L ++
Sbjct: 155 KERLSRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIV 210
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 203 (76.5 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 53/178 (29%), Positives = 94/178 (52%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL---VAL 326
++ SAT + + A+ L P+ ++ G + + +++ K +L +AL
Sbjct: 487 LLFSATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLAL 546
Query: 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386
L S G ++F S+ + +L + L FG + G + Q RS+T++ F+EGKI
Sbjct: 547 LLSQGS--VLIFVSTKVAVEQLSSNLTKFG---FQTCTLHGDKNQIERSQTIQTFKEGKI 601
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444
+L+++D RG+D+ + NVVNYD I+++ HR GRT RAG G +TL+ ++
Sbjct: 602 NILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDI 659
Score = 111 (44.1 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 30/101 (29%), Positives = 52/101 (51%)
Query: 153 KLEAGICY---DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209
KL+ + Y + +EL++ +I+VATPGRL+D I + L + YLV+DE D++
Sbjct: 406 KLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKL-KATKLNRVSYLVLDEADKM 464
Query: 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250
+ + +++ R D + A TF P+ +TI
Sbjct: 465 FDFGFGPQVLSIVNHVRPDRQTLLFSA-TFKPNVEEFARTI 504
Score = 71 (30.1 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95
D L A+ I + P+Q ++ I L RDL + TGSGKT ++ P + +
Sbjct: 313 DDILLQAIAKQSIETPTPIQ----KQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIM 368
Query: 96 NRAVRCLR----ALVVLPTRDLALQV 117
++ AL + PTR+LA Q+
Sbjct: 369 DQPYLEKGDGPIALFLAPTRELAHQI 394
>UNIPROTKB|E1BW15 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0043330 "response to exogenous dsRNA" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0043330 GeneTree:ENSGT00680000100003 OMA:EILCVAY
EMBL:AADN02028009 IPI:IPI00582179 Ensembl:ENSGALT00000006591
Uniprot:E1BW15
Length = 693
Score = 158 (60.7 bits), Expect = 2.9e-22, Sum P(3) = 2.9e-22
Identities = 38/110 (34%), Positives = 58/110 (52%)
Query: 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393
+ IVF + + + L LN ++ + G Q R TLK FR G +VLV+++
Sbjct: 367 RTIVFCETKKDANELA--LN--ASIKQDCQSLHGDIPQKQREITLKGFRNGAFKVLVATN 422
Query: 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
RG+D+ V+ VV P +++YIHR+GRT RAG+ G C + E
Sbjct: 423 VAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRKE 472
Score = 128 (50.1 bits), Expect = 2.9e-22, Sum P(3) = 2.9e-22
Identities = 34/83 (40%), Positives = 49/83 (59%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS-----NR 97
LQ G++ LFPVQV +T P +D+ + TG+GKT S+A+P+++ L R
Sbjct: 128 LQARGVTYLFPVQV----KTFNPVYSGKDVIAQARTGTGKTFSFAIPLIEKLQADSQERR 183
Query: 98 AVRCLRALVVLPTRDLALQV-KD 119
R + LV+ PTR+LA QV KD
Sbjct: 184 RGRSPKVLVLAPTRELANQVAKD 206
Score = 97 (39.2 bits), Expect = 2.9e-22, Sum P(3) = 2.9e-22
Identities = 20/64 (31%), Positives = 40/64 (62%)
Query: 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT-RS 227
++S +DILV TPGR+ DH+ + L + ++V+DE D++L + + +L++ +
Sbjct: 232 IRSGIDILVGTPGRIKDHLQNGK-LDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKK 290
Query: 228 DNEN 231
D+E+
Sbjct: 291 DSED 294
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 218 (81.8 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 62/177 (35%), Positives = 89/177 (50%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQ 328
++ SAT T+ LA+L L +P ++ E +Y P LE ++CE + K L + L+
Sbjct: 250 LLFSATQTKSVKDLARLSLKNPEYIWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLR 309
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQSVRSKTLKAFREGKI 386
S ++K IVF SS + L + F LR I I G Q+Q R + F +
Sbjct: 310 SHLKKKSIVFFSSCKEVQYLYRV---FCRLRPGISILALHGRQQQMRRMEVYNEFVRKRS 366
Query: 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
VL ++D RG+D VN V+ +D P TYIHRAGRTAR + G +L E
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSE 423
Score = 121 (47.7 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 34/119 (28%), Positives = 60/119 (50%)
Query: 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN---RAVRCLRALVVLPTRDLA 114
+ ++TIG L +D+ + TGSGKTL++ +P+++ L + L L++ PTR+LA
Sbjct: 95 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 154
Query: 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173
Q +V + S GL +G + E +E I + +C P +LQ + +
Sbjct: 155 YQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINN--INILVC-TPGRLLQHMDETI 209
Score = 104 (41.7 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 150 KRPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207
K AG+ +D+ E + + ++ILV TPGRL+ H++ T F +L LV+DE D
Sbjct: 166 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEAD 225
Query: 208 RLLREAYQAWLPTVLQ-LTRSDNENRFSDAST 238
R+L + + +++ L + FS T
Sbjct: 226 RILDMGFADTMNAIIENLPKKRQTLLFSATQT 257
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 189 (71.6 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 54/178 (30%), Positives = 78/178 (43%)
Query: 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGE 332
SAT ++ LA L+ + + G + IC KP LV LL +
Sbjct: 424 SATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISP 483
Query: 333 --------EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384
K IVF + + ++ G I G + Q+ R LK FR G
Sbjct: 484 IKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIH---GDKTQNERDSVLKDFRNG 540
Query: 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442
K +L+++D +RG+DVE + V+NYD P + Y+HR GRT R QLG +T D
Sbjct: 541 KSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPD 598
Score = 153 (58.9 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 51/166 (30%), Positives = 83/166 (50%)
Query: 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-----ALVVLPTRDLALQVKDVFAAI 124
RDL + TGSGKTL+Y LP + + N+ +R ALV+ PTR+LA Q++
Sbjct: 275 RDLVGIAQTGSGKTLAYMLPAIVHIGNQPP-IIRGEGPIALVLAPTRELAQQIQ------ 327
Query: 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184
SV G + I+ + G P+ ++L V++++ATPGRL+
Sbjct: 328 ------SVVRDYGHLCKPE-----IRHTCIFGGSSKVPQ--ARDLDRGVEVIIATPGRLI 374
Query: 185 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNE 230
D + R L+ YLV+DE DR+L ++ + +++ R D +
Sbjct: 375 DFLE-NRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 419
>UNIPROTKB|Q9NR30 [details] [associations]
symbol:DDX21 "Nucleolar RNA helicase 2" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:CH471083 GO:GO:0009615 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:U41387 EMBL:AF261903 EMBL:AF261917 EMBL:AF261904 EMBL:AF261905
EMBL:AF261906 EMBL:AF261907 EMBL:AF261908 EMBL:AF261909
EMBL:AF261910 EMBL:AF261911 EMBL:AF261912 EMBL:AF261913
EMBL:AF261914 EMBL:AF261915 EMBL:AF261916 EMBL:AK315585
EMBL:CR749598 EMBL:AL359844 EMBL:BC008071 IPI:IPI00015953
IPI:IPI00477179 PIR:PC6010 RefSeq:NP_001243839.1 RefSeq:NP_004719.2
UniGene:Hs.223141 ProteinModelPortal:Q9NR30 SMR:Q9NR30
IntAct:Q9NR30 MINT:MINT-231639 STRING:Q9NR30 PhosphoSite:Q9NR30
DMDM:76803555 SWISS-2DPAGE:Q9NR30 PaxDb:Q9NR30 PeptideAtlas:Q9NR30
PRIDE:Q9NR30 DNASU:9188 Ensembl:ENST00000354185 GeneID:9188
KEGG:hsa:9188 UCSC:uc001jov.1 CTD:9188 GeneCards:GC10P070715
H-InvDB:HIX0008880 HGNC:HGNC:2744 HPA:HPA036592 MIM:606357
neXtProt:NX_Q9NR30 PharmGKB:PA27210 HOGENOM:HOG000268805
HOVERGEN:HBG051331 InParanoid:Q9NR30 OMA:EILCVAY OrthoDB:EOG46143T
PhylomeDB:Q9NR30 ChiTaRS:DDX21 GenomeRNAi:9188 NextBio:34453
ArrayExpress:Q9NR30 Bgee:Q9NR30 CleanEx:HS_DDX21
Genevestigator:Q9NR30 GermOnline:ENSG00000165732 Uniprot:Q9NR30
Length = 783
Score = 162 (62.1 bits), Expect = 3.5e-22, Sum P(3) = 3.5e-22
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 371 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430
Q R TLK FR G VLV+++ RG+D+ V+ V+ P +++YIHR+GRT RAG
Sbjct: 473 QKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAG 532
Query: 431 QLGRCFTLL-HKDEVCLV 447
+ G C HK+E LV
Sbjct: 533 RTGVCICFYQHKEEYQLV 550
Score = 122 (48.0 bits), Expect = 3.5e-22, Sum P(3) = 3.5e-22
Identities = 32/106 (30%), Positives = 57/106 (53%)
Query: 31 HLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPI 90
+ P + +K+ L+ G++ LFP+Q + G +DL + TG+GKT S+A+P+
Sbjct: 190 NFPISEETIKL-LKGRGVTFLFPIQAKTFHHVYS-G---KDLIAQARTGTGKTFSFAIPL 244
Query: 91 VQTL-----SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131
++ L + R + LV+ PTR+LA QV F+ I + ++
Sbjct: 245 IEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVA 290
Score = 100 (40.3 bits), Expect = 3.5e-22, Sum P(3) = 3.5e-22
Identities = 25/97 (25%), Positives = 53/97 (54%)
Query: 139 SSIADEISELIKRPKLEA---GICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195
+ ++ + S++ K+ + G Y + + +++ +DILV TPGR+ DHI + L
Sbjct: 274 NQVSKDFSDITKKLSVACFYGGTPYGGQ--FERMRNGIDILVGTPGRIKDHIQNGK-LDL 330
Query: 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLT-RSDNEN 231
L ++V+DE D++L + + +L + + D+E+
Sbjct: 331 TKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSED 367
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 211 (79.3 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 56/175 (32%), Positives = 87/175 (49%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
M+ SAT+ +D KLA+ + P + + + +E + + KP L ++
Sbjct: 183 MLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTV-DTIEQRVIETTDRAKPDALRFVMDR 241
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
++F + +L L G E G Q+ R + +K+FRE KIQ L
Sbjct: 242 DQPFLAVIFCRTKVRASKLYDNLKGLG---YNCAELHGDIPQAKRERVMKSFREAKIQYL 298
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDE 443
+++D RG+DV+GV +V NYD P +++YIHR GRT RAG G T + KDE
Sbjct: 299 IATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDE 353
Score = 117 (46.2 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 31/107 (28%), Positives = 60/107 (56%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
L+ GI+ P+Q ++ I L +D+ + TG+GKTL++ LPI++ + + +
Sbjct: 20 LRENGITEATPIQ----EKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSD-V 74
Query: 103 RALVVLPTRDLALQVK-DVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+AL+V PTR+LALQ+ ++ + ++V G +A ++ +L
Sbjct: 75 QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL 121
Score = 108 (43.1 bits), Expect = 3.4e-21, Sum P(2) = 3.4e-21
Identities = 31/101 (30%), Positives = 50/101 (49%)
Query: 141 IADEISE-LIKRPKLEAGICYDPEDVLQELQSA---VDILVATPGRLMDHINATRGFTLE 196
I EI + L++R + Y +DV Q+L+ I+VATPGRL+DHI L
Sbjct: 89 ITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGRLLDHIRRET-IDLS 147
Query: 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
+L +V+DE D++L + + +L T + A+
Sbjct: 148 NLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSAT 188
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 211 (79.3 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 56/175 (32%), Positives = 87/175 (49%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329
M+ SAT+ +D KLA+ + P + + + +E + + KP L ++
Sbjct: 183 MLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTV-DTIEQRVIETTDRAKPDALRFVMDR 241
Query: 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389
++F + +L L G E G Q+ R + +K+FRE KIQ L
Sbjct: 242 DQPFLAVIFCRTKVRASKLYDNLKGLG---YNCAELHGDIPQAKRERVMKSFREAKIQYL 298
Query: 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH-KDE 443
+++D RG+DV+GV +V NYD P +++YIHR GRT RAG G T + KDE
Sbjct: 299 IATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDE 353
Score = 117 (46.2 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 31/107 (28%), Positives = 60/107 (56%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
L+ GI+ P+Q ++ I L +D+ + TG+GKTL++ LPI++ + + +
Sbjct: 20 LRENGITEATPIQ----EKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSD-V 74
Query: 103 RALVVLPTRDLALQVK-DVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
+AL+V PTR+LALQ+ ++ + ++V G +A ++ +L
Sbjct: 75 QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKL 121
Score = 108 (43.1 bits), Expect = 3.4e-21, Sum P(2) = 3.4e-21
Identities = 31/101 (30%), Positives = 50/101 (49%)
Query: 141 IADEISE-LIKRPKLEAGICYDPEDVLQELQSA---VDILVATPGRLMDHINATRGFTLE 196
I EI + L++R + Y +DV Q+L+ I+VATPGRL+DHI L
Sbjct: 89 ITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGRLLDHIRRET-IDLS 147
Query: 197 HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237
+L +V+DE D++L + + +L T + A+
Sbjct: 148 NLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLFSAT 188
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 167 (63.8 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 50/196 (25%), Positives = 92/196 (46%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 189 LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIK 248
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 249 QFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKM-HARDFTVSALH--G 305
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 306 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 365
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G + +++
Sbjct: 366 RFGRKGVAINFVTEED 381
Score = 127 (49.8 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 37/124 (29%), Positives = 67/124 (54%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D LK +L GI + F A+ Q I P + D+ + +G+GKT ++A+ I+Q L
Sbjct: 37 DMNLKESLLR-GIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 95
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPK 153
+ +ALV+ PTR+LA Q++ V A+ +G + +G +++ +E+ +L + P
Sbjct: 96 EIE-FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPH 154
Query: 154 LEAG 157
+ G
Sbjct: 155 IVVG 158
Score = 75 (31.5 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 166 LQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
+Q+LQ+ A I+V TPGR+ D +N R + + + V+DE D +L ++ + + Q
Sbjct: 145 MQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 167 (63.8 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 50/196 (25%), Positives = 92/196 (46%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 189 LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIK 248
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 249 QFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKM-HARDFTVSALH--G 305
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 306 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 365
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G + +++
Sbjct: 366 RFGRKGVAINFVTEED 381
Score = 127 (49.8 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 37/124 (29%), Positives = 67/124 (54%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D LK +L GI + F A+ Q I P + D+ + +G+GKT ++A+ I+Q L
Sbjct: 37 DMNLKESLLR-GIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 95
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPK 153
+ +ALV+ PTR+LA Q++ V A+ +G + +G +++ +E+ +L + P
Sbjct: 96 EIE-FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPH 154
Query: 154 LEAG 157
+ G
Sbjct: 155 IVVG 158
Score = 75 (31.5 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 166 LQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
+Q+LQ+ A I+V TPGR+ D +N R + + + V+DE D +L ++ + + Q
Sbjct: 145 MQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
>UNIPROTKB|Q14240 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
"helicase activity" evidence=TAS] [GO:0006446 "regulation of
translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
translation initiation factor 4F complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
Length = 407
Score = 167 (63.8 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 50/196 (25%), Positives = 92/196 (46%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 189 LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIK 248
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 249 QFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKM-HARDFTVSALH--G 305
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 306 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 365
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G + +++
Sbjct: 366 RFGRKGVAINFVTEED 381
Score = 127 (49.8 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 37/124 (29%), Positives = 67/124 (54%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D LK +L GI + F A+ Q I P + D+ + +G+GKT ++A+ I+Q L
Sbjct: 37 DMNLKESLLR-GIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 95
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPK 153
+ +ALV+ PTR+LA Q++ V A+ +G + +G +++ +E+ +L + P
Sbjct: 96 EIE-FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPH 154
Query: 154 LEAG 157
+ G
Sbjct: 155 IVVG 158
Score = 75 (31.5 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 166 LQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
+Q+LQ+ A I+V TPGR+ D +N R + + + V+DE D +L ++ + + Q
Sbjct: 145 MQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
>UNIPROTKB|A6M930 [details] [associations]
symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
Uniprot:A6M930
Length = 407
Score = 167 (63.8 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 50/196 (25%), Positives = 92/196 (46%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 189 LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIK 248
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 249 QFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKM-HARDFTVSALH--G 305
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 306 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 365
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G + +++
Sbjct: 366 RFGRKGVAINFVTEED 381
Score = 127 (49.8 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 37/124 (29%), Positives = 67/124 (54%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D LK +L GI + F A+ Q I P + D+ + +G+GKT ++A+ I+Q L
Sbjct: 37 DMNLKESLLR-GIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 95
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPK 153
+ +ALV+ PTR+LA Q++ V A+ +G + +G +++ +E+ +L + P
Sbjct: 96 EIE-FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPH 154
Query: 154 LEAG 157
+ G
Sbjct: 155 IVVG 158
Score = 75 (31.5 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 166 LQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
+Q+LQ+ A I+V TPGR+ D +N R + + + V+DE D +L ++ + + Q
Sbjct: 145 MQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
>MGI|MGI:106906 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
GermOnline:ENSMUSG00000022884 Uniprot:P10630
Length = 407
Score = 167 (63.8 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 50/196 (25%), Positives = 92/196 (46%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 189 LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIK 248
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 249 QFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKM-HARDFTVSALH--G 305
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 306 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 365
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G + +++
Sbjct: 366 RFGRKGVAINFVTEED 381
Score = 127 (49.8 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 37/124 (29%), Positives = 67/124 (54%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D LK +L GI + F A+ Q I P + D+ + +G+GKT ++A+ I+Q L
Sbjct: 37 DMNLKESLLR-GIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 95
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPK 153
+ +ALV+ PTR+LA Q++ V A+ +G + +G +++ +E+ +L + P
Sbjct: 96 EIE-FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPH 154
Query: 154 LEAG 157
+ G
Sbjct: 155 IVVG 158
Score = 75 (31.5 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 166 LQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
+Q+LQ+ A I+V TPGR+ D +N R + + + V+DE D +L ++ + + Q
Sbjct: 145 MQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
>RGD|1309225 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309225 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 EMBL:BC085859 IPI:IPI00193595
RefSeq:NP_001008336.1 UniGene:Rn.143972 ProteinModelPortal:Q5RKI1
SMR:Q5RKI1 STRING:Q5RKI1 PhosphoSite:Q5RKI1
World-2DPAGE:0004:Q5RKI1 PRIDE:Q5RKI1 GeneID:303831 KEGG:rno:303831
UCSC:RGD:1309225 InParanoid:Q5RKI1 NextBio:652169
ArrayExpress:Q5RKI1 Genevestigator:Q5RKI1
GermOnline:ENSRNOG00000001815 Uniprot:Q5RKI1
Length = 407
Score = 167 (63.8 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 50/196 (25%), Positives = 92/196 (46%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 189 LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIK 248
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 249 QFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKM-HARDFTVSALH--G 305
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 306 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 365
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G + +++
Sbjct: 366 RFGRKGVAINFVTEED 381
Score = 127 (49.8 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 37/124 (29%), Positives = 67/124 (54%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D LK +L GI + F A+ Q I P + D+ + +G+GKT ++A+ I+Q L
Sbjct: 37 DMNLKESLLR-GIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 95
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPK 153
+ +ALV+ PTR+LA Q++ V A+ +G + +G +++ +E+ +L + P
Sbjct: 96 EIE-FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPH 154
Query: 154 LEAG 157
+ G
Sbjct: 155 IVVG 158
Score = 75 (31.5 bits), Expect = 4.1e-22, Sum P(3) = 4.1e-22
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 166 LQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
+Q+LQ+ A I+V TPGR+ D +N R + + + V+DE D +L ++ + + Q
Sbjct: 145 MQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
>UNIPROTKB|F8WFX2 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
OMA:TENDARQ IPI:IPI00193595 ProteinModelPortal:F8WFX2 PRIDE:F8WFX2
Ensembl:ENSRNOT00000002484 Uniprot:F8WFX2
Length = 408
Score = 167 (63.8 bits), Expect = 4.2e-22, Sum P(3) = 4.2e-22
Identities = 50/196 (25%), Positives = 92/196 (46%)
Query: 255 VERGFKDKPYPRLVKM-------VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307
+ RGFKD+ Y K+ +LSAT+ D ++ + + P+ + + L
Sbjct: 190 LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIK 249
Query: 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367
+ Y + + K L L ++L + ++F ++ L + H + + G
Sbjct: 250 QFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKM-HARDFTVSALH--G 306
Query: 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427
Q R ++ FR G +VL+++D + RG+DV+ V+ V+NYD P + YIHR GR
Sbjct: 307 DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGG 366
Query: 428 RAGQLGRCFTLLHKDE 443
R G+ G + +++
Sbjct: 367 RFGRKGVAINFVTEED 382
Score = 127 (49.8 bits), Expect = 4.2e-22, Sum P(3) = 4.2e-22
Identities = 37/124 (29%), Positives = 67/124 (54%)
Query: 36 DPRLKVALQNMGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94
D LK +L GI + F A+ Q I P + D+ + +G+GKT ++A+ I+Q L
Sbjct: 38 DMNLKESLLR-GIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL 96
Query: 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL-IKRPK 153
+ +ALV+ PTR+LA Q++ V A+ +G + +G +++ +E+ +L + P
Sbjct: 97 EIE-FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPH 155
Query: 154 LEAG 157
+ G
Sbjct: 156 IVVG 159
Score = 75 (31.5 bits), Expect = 4.2e-22, Sum P(3) = 4.2e-22
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 166 LQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQ 223
+Q+LQ+ A I+V TPGR+ D +N R + + + V+DE D +L ++ + + Q
Sbjct: 146 MQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 203
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 187 (70.9 bits), Expect = 4.3e-22, Sum P(3) = 4.3e-22
Identities = 56/201 (27%), Positives = 90/201 (44%)
Query: 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES 316
R D+ P ++ SAT ++ +LA+ L + + G + +C
Sbjct: 263 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHD 322
Query: 317 KLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373
K L+ L++ + E K IVF + L + G + I G + Q
Sbjct: 323 VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIH---GDKSQQE 379
Query: 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433
R L F+ GK +L+++D +RG+DVE V V+NYD P + YIHR GRTAR+ + G
Sbjct: 380 RDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTG 439
Query: 434 RCFTLLHKDEVCLVGCLTPLL 454
+T + + V L +L
Sbjct: 440 TAYTFFTPNNIKQVSDLISVL 460
Score = 99 (39.9 bits), Expect = 4.3e-22, Sum P(3) = 4.3e-22
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225
+++L+ V+ +ATPGRL+D + + L YLV+DE DR+L ++ + ++
Sbjct: 211 IRDLERGVENCIATPGRLIDFLECGKT-NLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 269
Query: 226 RSDNE 230
R D +
Sbjct: 270 RPDRQ 274
Score = 90 (36.7 bits), Expect = 4.3e-22, Sum P(3) = 4.3e-22
Identities = 40/150 (26%), Positives = 61/150 (40%)
Query: 4 AKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI 63
A++ + V + RS +CP L + + ++ F A+ +
Sbjct: 66 ARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 125
Query: 64 GPGLFERDLCINSPTGSGKTLSYALPIV-----QTLSNRAVRCLRALVVLPTRDLALQVK 118
L D+ + TGSGKTLSY LP + Q R + LV+ PTR+LA QV+
Sbjct: 126 PVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI-CLVLAPTRELAQQVQ 184
Query: 119 DVFAAIAPAVGLSVGLAVGQSSIADEISEL 148
V A A L G + +I +L
Sbjct: 185 QVAAEYCRACRLKSTCIYGGAPKGPQIRDL 214
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 164 (62.8 bits), Expect = 4.6e-22, Sum P(3) = 4.6e-22
Identities = 47/175 (26%), Positives = 82/175 (46%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQ 328
++ SAT + +A+ +++P+ + T K Y+L + S+++ L L+ L
Sbjct: 179 LLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEH 238
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
E +VF ++ T ++ L G + G Q R +TL F V
Sbjct: 239 K--PESAVVFCNTKRETQKVADELEGLG---FSVLALHGDLEQRDRDETLLQFANKSACV 293
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
LV++D RG+D++ ++ V NY + +IHR GRT RAG G +T + D+
Sbjct: 294 LVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTF-YNDQ 347
Score = 112 (44.5 bits), Expect = 4.6e-22, Sum P(3) = 4.6e-22
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
+K L G+ P+ + L+ I+V TPGR++DH++ R L +L LV+DE DR
Sbjct: 99 VKVLTLCGGVPMGPQ--IGSLEHGAHIIVGTPGRIVDHLDRNR-LDLSNLNMLVLDEADR 155
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 247
+L +Q L +++ + + + A TF P S+
Sbjct: 156 MLEMGFQPQLDAIIEQSPRERQTLLFSA-TF-PEQIQSI 192
Score = 96 (38.9 bits), Expect = 4.6e-22, Sum P(3) = 4.6e-22
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
L +MG + + P+Q +++ L D+ TGSGKT ++ L ++ L + R +
Sbjct: 16 LSSMGYNEMTPIQA----QSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFR-I 70
Query: 103 RALVVLPTRDLALQVKDVFAAIAPAV 128
+ LV+ PTR+LA QV +A +
Sbjct: 71 QTLVLCPTRELADQVAQEIRTLARGI 96
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 164 (62.8 bits), Expect = 4.6e-22, Sum P(3) = 4.6e-22
Identities = 47/175 (26%), Positives = 82/175 (46%)
Query: 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQ 328
++ SAT + +A+ +++P+ + T K Y+L + S+++ L L+ L
Sbjct: 179 LLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEH 238
Query: 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388
E +VF ++ T ++ L G + G Q R +TL F V
Sbjct: 239 K--PESAVVFCNTKRETQKVADELEGLG---FSVLALHGDLEQRDRDETLLQFANKSACV 293
Query: 389 LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443
LV++D RG+D++ ++ V NY + +IHR GRT RAG G +T + D+
Sbjct: 294 LVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTF-YNDQ 347
Score = 112 (44.5 bits), Expect = 4.6e-22, Sum P(3) = 4.6e-22
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208
+K L G+ P+ + L+ I+V TPGR++DH++ R L +L LV+DE DR
Sbjct: 99 VKVLTLCGGVPMGPQ--IGSLEHGAHIIVGTPGRIVDHLDRNR-LDLSNLNMLVLDEADR 155
Query: 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 247
+L +Q L +++ + + + A TF P S+
Sbjct: 156 MLEMGFQPQLDAIIEQSPRERQTLLFSA-TF-PEQIQSI 192
Score = 96 (38.9 bits), Expect = 4.6e-22, Sum P(3) = 4.6e-22
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102
L +MG + + P+Q +++ L D+ TGSGKT ++ L ++ L + R +
Sbjct: 16 LSSMGYNEMTPIQA----QSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFR-I 70
Query: 103 RALVVLPTRDLALQVKDVFAAIAPAV 128
+ LV+ PTR+LA QV +A +
Sbjct: 71 QTLVLCPTRELADQVAQEIRTLARGI 96
WARNING: HSPs involving 602 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 481 481 0.00080 119 3 11 22 0.36 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 852
No. of states in DFA: 615 (65 KB)
Total size of DFA: 268 KB (2141 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.02u 0.12s 39.14t Elapsed: 00:00:01
Total cpu time: 39.08u 0.12s 39.20t Elapsed: 00:00:01
Start: Sat May 11 02:10:46 2013 End: Sat May 11 02:10:47 2013
WARNINGS ISSUED: 2