Query 011620
Match_columns 481
No_of_seqs 158 out of 1716
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 03:23:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 5.3E-59 1.2E-63 409.5 28.6 357 34-458 67-423 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 1.8E-58 3.9E-63 433.5 29.4 372 29-467 93-473 (519)
3 PTZ00110 helicase; Provisional 100.0 1E-55 2.2E-60 438.5 35.2 382 9-463 117-505 (545)
4 PRK04837 ATP-dependent RNA hel 100.0 2.6E-55 5.5E-60 427.5 32.4 357 35-457 15-377 (423)
5 PLN00206 DEAD-box ATP-dependen 100.0 2.8E-54 6E-59 427.4 34.6 389 15-477 114-514 (518)
6 COG0513 SrmB Superfamily II DN 100.0 3.3E-54 7.2E-59 423.4 32.7 356 35-457 36-396 (513)
7 PRK04537 ATP-dependent RNA hel 100.0 6.1E-54 1.3E-58 427.0 33.8 357 35-456 16-378 (572)
8 PRK10590 ATP-dependent RNA hel 100.0 6.7E-54 1.5E-58 419.9 32.4 356 34-457 7-367 (456)
9 PRK11776 ATP-dependent RNA hel 100.0 1E-53 2.2E-58 420.8 33.5 352 35-456 11-363 (460)
10 KOG0338 ATP-dependent RNA heli 100.0 2.9E-54 6.2E-59 391.6 25.5 359 23-453 182-544 (691)
11 PRK01297 ATP-dependent RNA hel 100.0 8.7E-53 1.9E-57 415.1 37.2 360 34-458 93-458 (475)
12 KOG0345 ATP-dependent RNA heli 100.0 2.2E-53 4.8E-58 382.7 29.4 350 34-446 12-368 (567)
13 PRK11192 ATP-dependent RNA hel 100.0 4.5E-53 9.8E-58 413.9 33.9 354 34-455 7-365 (434)
14 KOG0328 Predicted ATP-dependen 100.0 6.3E-54 1.4E-58 361.7 22.4 369 20-463 25-394 (400)
15 KOG0333 U5 snRNP-like RNA heli 100.0 1.5E-53 3.2E-58 388.4 25.9 391 14-456 237-638 (673)
16 KOG0342 ATP-dependent RNA heli 100.0 1.8E-53 3.8E-58 385.9 26.0 389 26-481 81-477 (543)
17 PRK11634 ATP-dependent RNA hel 100.0 1.3E-52 2.9E-57 419.4 34.4 354 34-456 12-366 (629)
18 KOG0350 DEAD-box ATP-dependent 100.0 1.8E-52 3.8E-57 379.3 26.8 422 9-456 108-554 (620)
19 KOG0340 ATP-dependent RNA heli 100.0 2.7E-52 5.8E-57 362.9 26.1 357 34-457 13-376 (442)
20 PTZ00424 helicase 45; Provisio 100.0 1.5E-50 3.3E-55 393.7 32.6 353 34-455 34-387 (401)
21 KOG0335 ATP-dependent RNA heli 100.0 2.4E-51 5.3E-56 378.5 24.8 381 15-464 67-466 (482)
22 KOG0343 RNA Helicase [RNA proc 100.0 9.3E-51 2E-55 372.2 28.3 359 29-453 71-434 (758)
23 KOG0326 ATP-dependent RNA heli 100.0 2.5E-52 5.5E-57 357.9 16.2 367 20-457 78-444 (459)
24 KOG0336 ATP-dependent RNA heli 100.0 7.7E-51 1.7E-55 359.9 20.4 374 17-463 214-593 (629)
25 KOG0348 ATP-dependent RNA heli 100.0 3.9E-49 8.4E-54 360.3 27.3 378 22-451 131-563 (708)
26 KOG0346 RNA helicase [RNA proc 100.0 9.7E-50 2.1E-54 356.1 22.0 359 34-458 25-426 (569)
27 KOG0347 RNA helicase [RNA proc 100.0 3.5E-50 7.6E-55 368.3 18.0 376 16-460 175-588 (731)
28 KOG0339 ATP-dependent RNA heli 100.0 2.2E-47 4.7E-52 346.6 24.6 371 17-461 218-594 (731)
29 TIGR03817 DECH_helic helicase/ 100.0 5.2E-47 1.1E-51 386.7 30.4 369 17-455 7-401 (742)
30 KOG0341 DEAD-box protein abstr 100.0 5.4E-48 1.2E-52 339.7 16.1 380 4-458 151-545 (610)
31 TIGR00614 recQ_fam ATP-depende 100.0 3.7E-45 7.9E-50 359.3 29.3 334 45-455 6-346 (470)
32 KOG0334 RNA helicase [RNA proc 100.0 1.5E-45 3.3E-50 363.9 21.7 373 14-459 357-737 (997)
33 PLN03137 ATP-dependent DNA hel 100.0 5.4E-44 1.2E-48 361.9 32.0 343 35-452 444-797 (1195)
34 KOG0332 ATP-dependent RNA heli 100.0 4.4E-45 9.6E-50 319.9 20.5 364 16-454 83-456 (477)
35 PRK11057 ATP-dependent DNA hel 100.0 7.3E-44 1.6E-48 358.8 32.4 340 35-452 9-353 (607)
36 KOG0327 Translation initiation 100.0 1.1E-44 2.3E-49 320.2 20.1 362 20-457 24-385 (397)
37 KOG0344 ATP-dependent RNA heli 100.0 2.3E-44 5.1E-49 334.4 22.3 385 16-465 126-518 (593)
38 TIGR01389 recQ ATP-dependent D 100.0 1.6E-42 3.4E-47 350.6 29.4 335 41-453 3-342 (591)
39 KOG4284 DEAD box protein [Tran 100.0 1.7E-43 3.6E-48 329.9 19.2 351 29-449 27-387 (980)
40 PRK02362 ski2-like helicase; P 100.0 2.3E-42 4.9E-47 356.9 29.5 341 29-442 3-397 (737)
41 KOG0337 ATP-dependent RNA heli 100.0 5E-43 1.1E-47 311.6 19.2 363 21-457 20-383 (529)
42 PRK13767 ATP-dependent helicas 100.0 7.9E-42 1.7E-46 355.7 31.4 344 35-440 18-396 (876)
43 COG1201 Lhr Lhr-like helicases 100.0 8.8E-42 1.9E-46 339.2 26.5 343 33-441 6-361 (814)
44 PRK00254 ski2-like helicase; P 100.0 5.4E-40 1.2E-44 338.5 30.4 333 35-443 8-389 (720)
45 TIGR00580 mfd transcription-re 100.0 2.5E-39 5.4E-44 333.1 31.8 325 38-442 440-770 (926)
46 PRK01172 ski2-like helicase; P 100.0 2.6E-39 5.7E-44 332.1 28.7 333 35-442 8-378 (674)
47 PRK10917 ATP-dependent DNA hel 100.0 2E-38 4.4E-43 322.7 32.4 326 37-441 249-588 (681)
48 COG1111 MPH1 ERCC4-like helica 100.0 3.8E-38 8.3E-43 288.7 29.6 325 48-443 13-482 (542)
49 TIGR00643 recG ATP-dependent D 100.0 3.4E-38 7.5E-43 319.1 32.2 328 37-440 223-564 (630)
50 COG0514 RecQ Superfamily II DN 100.0 1E-38 2.3E-43 306.2 26.7 341 39-456 5-351 (590)
51 PRK10689 transcription-repair 100.0 1.6E-37 3.5E-42 326.6 31.8 329 35-442 586-919 (1147)
52 PRK09751 putative ATP-dependen 100.0 1.6E-37 3.5E-42 328.0 28.1 304 74-436 1-379 (1490)
53 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.5E-36 3.2E-41 303.7 29.2 324 46-441 12-390 (844)
54 COG1202 Superfamily II helicas 100.0 3.6E-37 7.9E-42 284.5 20.5 358 14-443 181-554 (830)
55 PHA02558 uvsW UvsW helicase; P 100.0 3.1E-36 6.7E-41 297.5 27.5 308 49-440 113-450 (501)
56 COG1204 Superfamily II helicas 100.0 7.9E-36 1.7E-40 301.1 25.6 337 35-439 16-405 (766)
57 KOG0329 ATP-dependent RNA heli 100.0 1.4E-36 3.1E-41 253.2 14.0 307 35-444 49-357 (387)
58 PHA02653 RNA helicase NPH-II; 100.0 1.1E-34 2.5E-39 288.9 23.4 319 50-446 160-518 (675)
59 TIGR00603 rad25 DNA repair hel 100.0 3E-34 6.4E-39 284.4 24.7 314 50-448 255-613 (732)
60 COG1205 Distinct helicase fami 100.0 1.2E-33 2.6E-38 289.4 29.3 344 35-440 55-420 (851)
61 TIGR01587 cas3_core CRISPR-ass 100.0 5E-34 1.1E-38 273.1 24.9 315 71-443 1-337 (358)
62 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.4E-34 9.6E-39 291.5 24.8 307 62-448 10-342 (819)
63 KOG0354 DEAD-box like helicase 100.0 4.7E-34 1E-38 277.3 22.6 328 48-446 60-533 (746)
64 PRK09401 reverse gyrase; Revie 100.0 2.7E-33 5.9E-38 295.4 29.8 326 46-428 77-430 (1176)
65 PRK13766 Hef nuclease; Provisi 100.0 1.1E-32 2.3E-37 288.9 31.8 325 48-445 13-482 (773)
66 PRK11664 ATP-dependent RNA hel 100.0 9.7E-34 2.1E-38 289.8 22.5 305 62-446 13-343 (812)
67 PRK14701 reverse gyrase; Provi 100.0 1.3E-33 2.9E-38 303.8 24.5 352 37-443 66-457 (1638)
68 TIGR01054 rgy reverse gyrase. 100.0 5.9E-32 1.3E-36 285.8 31.0 318 39-413 67-408 (1171)
69 PRK12898 secA preprotein trans 100.0 2.2E-32 4.8E-37 268.0 25.6 357 46-444 100-588 (656)
70 TIGR03714 secA2 accessory Sec 100.0 3.4E-32 7.4E-37 269.8 24.6 357 50-444 68-539 (762)
71 COG1061 SSL2 DNA or RNA helica 100.0 4.4E-32 9.5E-37 262.5 23.5 303 49-434 35-382 (442)
72 KOG0352 ATP-dependent DNA heli 100.0 1.5E-32 3.3E-37 245.3 17.4 341 38-452 6-372 (641)
73 PRK09200 preprotein translocas 100.0 1.6E-31 3.6E-36 267.6 26.3 358 46-444 75-543 (790)
74 KOG0952 DNA/RNA helicase MER3/ 100.0 6.8E-32 1.5E-36 265.5 22.1 344 46-453 106-502 (1230)
75 KOG0351 ATP-dependent DNA heli 100.0 5E-32 1.1E-36 275.4 20.5 340 38-454 251-604 (941)
76 TIGR03158 cas3_cyano CRISPR-as 100.0 8.9E-31 1.9E-35 247.4 27.2 314 54-427 1-357 (357)
77 TIGR00963 secA preprotein tran 100.0 1.2E-30 2.7E-35 257.0 28.3 357 46-444 53-519 (745)
78 PRK04914 ATP-dependent helicas 100.0 1.5E-30 3.2E-35 267.2 26.5 139 317-458 478-619 (956)
79 COG1200 RecG RecG-like helicas 100.0 3.3E-30 7.2E-35 246.9 26.2 330 38-445 251-594 (677)
80 KOG0349 Putative DEAD-box RNA 100.0 1.6E-30 3.5E-35 232.8 21.9 288 101-443 286-616 (725)
81 KOG0353 ATP-dependent DNA heli 100.0 1.9E-30 4.1E-35 228.8 20.8 350 27-451 71-476 (695)
82 PRK11448 hsdR type I restricti 100.0 4.9E-30 1.1E-34 269.3 24.2 315 49-430 412-801 (1123)
83 PRK09694 helicase Cas3; Provis 100.0 4.8E-29 1E-33 254.6 29.4 336 49-431 285-664 (878)
84 PRK05580 primosome assembly pr 100.0 1.1E-28 2.3E-33 250.5 28.6 329 50-450 144-557 (679)
85 COG1197 Mfd Transcription-repa 100.0 6E-28 1.3E-32 244.3 28.9 322 42-443 587-914 (1139)
86 COG4098 comFA Superfamily II D 100.0 3.8E-28 8.1E-33 211.8 21.4 324 50-458 97-431 (441)
87 KOG0951 RNA helicase BRR2, DEA 100.0 4.9E-28 1.1E-32 241.6 23.4 355 34-451 295-711 (1674)
88 PRK11131 ATP-dependent RNA hel 100.0 3.9E-28 8.4E-33 252.9 22.9 301 62-446 82-415 (1294)
89 TIGR00595 priA primosomal prot 100.0 1.3E-27 2.8E-32 234.1 23.6 304 73-447 1-386 (505)
90 cd00268 DEADc DEAD-box helicas 100.0 1.3E-26 2.7E-31 203.8 20.8 196 35-294 6-202 (203)
91 KOG0947 Cytoplasmic exosomal R 100.0 7.5E-27 1.6E-31 227.7 20.6 330 46-457 294-737 (1248)
92 TIGR01967 DEAH_box_HrpA ATP-de 100.0 8.7E-27 1.9E-31 243.8 22.5 319 46-446 60-408 (1283)
93 PLN03142 Probable chromatin-re 99.9 8E-26 1.7E-30 233.3 26.6 358 50-443 169-598 (1033)
94 PRK13104 secA preprotein trans 99.9 1.3E-25 2.8E-30 224.8 24.0 354 50-444 82-589 (896)
95 PRK12904 preprotein translocas 99.9 1.6E-25 3.6E-30 223.9 24.6 356 46-444 78-575 (830)
96 COG4096 HsdR Type I site-speci 99.9 1.3E-25 2.8E-30 218.4 22.2 356 49-444 164-547 (875)
97 TIGR01407 dinG_rel DnaQ family 99.9 1.2E-24 2.6E-29 228.0 31.0 402 32-442 228-814 (850)
98 COG4581 Superfamily II RNA hel 99.9 3E-25 6.5E-30 224.7 22.2 318 44-441 114-536 (1041)
99 PRK12906 secA preprotein trans 99.9 5.2E-25 1.1E-29 219.5 23.5 357 46-444 77-555 (796)
100 KOG0950 DNA polymerase theta/e 99.9 1.9E-25 4.2E-30 219.3 19.7 353 35-454 207-623 (1008)
101 COG0556 UvrB Helicase subunit 99.9 2.4E-24 5.3E-29 198.8 23.1 172 267-450 387-565 (663)
102 PRK12899 secA preprotein trans 99.9 9E-24 1.9E-28 211.3 26.8 146 34-211 68-229 (970)
103 PRK13107 preprotein translocas 99.9 3.7E-24 8E-29 213.8 22.7 357 46-444 79-593 (908)
104 KOG0948 Nuclear exosomal RNA h 99.9 2.8E-25 6.1E-30 211.7 12.7 309 50-441 129-538 (1041)
105 TIGR00348 hsdR type I site-spe 99.9 1.5E-23 3.3E-28 212.9 25.3 323 35-428 213-633 (667)
106 COG1110 Reverse gyrase [DNA re 99.9 1.8E-22 3.9E-27 199.7 26.9 319 47-413 80-416 (1187)
107 KOG0385 Chromatin remodeling c 99.9 1.9E-22 4E-27 193.4 25.4 365 49-449 166-604 (971)
108 PF00270 DEAD: DEAD/DEAH box h 99.9 2.9E-23 6.3E-28 177.0 16.5 148 52-226 1-148 (169)
109 PRK07246 bifunctional ATP-depe 99.9 6.7E-22 1.5E-26 204.3 29.5 378 47-442 243-783 (820)
110 COG1203 CRISPR-associated heli 99.9 1.1E-22 2.5E-27 208.7 21.0 349 50-449 195-557 (733)
111 COG1198 PriA Primosomal protei 99.9 1.6E-22 3.5E-27 200.8 20.7 333 49-452 197-613 (730)
112 KOG0384 Chromodomain-helicase 99.9 4.2E-22 9.1E-27 199.9 17.6 367 49-438 369-805 (1373)
113 TIGR00631 uvrb excinuclease AB 99.9 1.3E-20 2.8E-25 189.3 28.2 132 317-452 425-563 (655)
114 KOG1123 RNA polymerase II tran 99.9 3.2E-21 6.8E-26 176.6 19.1 314 50-449 302-660 (776)
115 COG1643 HrpA HrpA-like helicas 99.9 1.4E-21 3.1E-26 197.0 18.6 303 64-444 60-389 (845)
116 PRK08074 bifunctional ATP-depe 99.9 5.1E-20 1.1E-24 194.0 29.8 160 47-211 255-469 (928)
117 TIGR03117 cas_csf4 CRISPR-asso 99.9 2.9E-20 6.3E-25 183.6 25.1 85 55-141 2-89 (636)
118 KOG0922 DEAH-box RNA helicase 99.9 1.9E-20 4.1E-25 178.4 18.5 307 62-446 59-394 (674)
119 COG4889 Predicted helicase [Ge 99.9 2.5E-21 5.5E-26 187.8 12.3 386 41-459 152-618 (1518)
120 PRK11747 dinG ATP-dependent DN 99.9 2E-19 4.4E-24 183.6 26.7 90 47-140 23-120 (697)
121 PRK12900 secA preprotein trans 99.8 1.7E-20 3.6E-25 188.6 16.1 128 313-445 577-714 (1025)
122 KOG0387 Transcription-coupled 99.8 1.1E-19 2.4E-24 175.4 20.7 370 49-440 204-654 (923)
123 PRK12326 preprotein translocas 99.8 7E-19 1.5E-23 172.2 24.8 356 46-444 75-549 (764)
124 KOG0390 DNA repair protein, SN 99.8 1.2E-18 2.7E-23 172.2 22.9 368 50-440 238-703 (776)
125 PRK05298 excinuclease ABC subu 99.8 2E-18 4.3E-23 175.0 24.5 120 318-441 430-556 (652)
126 KOG0920 ATP-dependent RNA heli 99.8 1.9E-18 4E-23 174.0 23.6 323 50-446 173-548 (924)
127 COG1199 DinG Rad3-related DNA 99.8 1E-18 2.2E-23 180.3 22.5 78 44-124 9-86 (654)
128 TIGR00604 rad3 DNA repair heli 99.8 3.6E-18 7.7E-23 176.1 23.7 79 46-125 6-84 (705)
129 KOG0923 mRNA splicing factor A 99.8 1.7E-18 3.8E-23 163.8 19.1 310 50-444 265-608 (902)
130 KOG0949 Predicted helicase, DE 99.8 1.9E-18 4.1E-23 170.0 18.7 148 50-226 511-661 (1330)
131 PRK13103 secA preprotein trans 99.8 2.7E-18 5.8E-23 172.3 19.6 356 46-444 79-593 (913)
132 KOG0389 SNF2 family DNA-depend 99.8 4.5E-18 9.7E-23 164.2 20.3 364 50-438 399-882 (941)
133 KOG1000 Chromatin remodeling p 99.8 8.7E-18 1.9E-22 154.0 18.5 313 49-440 197-599 (689)
134 KOG0924 mRNA splicing factor A 99.8 1.9E-17 4.1E-22 157.3 19.0 307 50-441 356-696 (1042)
135 KOG4150 Predicted ATP-dependen 99.8 2.5E-18 5.5E-23 160.0 12.2 370 5-446 247-644 (1034)
136 KOG0392 SNF2 family DNA-depend 99.8 4E-17 8.7E-22 164.1 20.3 349 50-438 975-1448(1549)
137 smart00487 DEXDc DEAD-like hel 99.8 3.3E-17 7E-22 143.8 17.2 187 45-297 3-191 (201)
138 PRK12903 secA preprotein trans 99.8 3.1E-17 6.6E-22 163.0 17.0 356 46-444 75-541 (925)
139 cd00079 HELICc Helicase superf 99.7 2.4E-17 5.2E-22 134.0 11.5 118 318-438 12-131 (131)
140 KOG0926 DEAH-box RNA helicase 99.7 9E-17 1.9E-21 155.3 17.0 310 63-441 265-703 (1172)
141 CHL00122 secA preprotein trans 99.7 4.6E-16 9.9E-21 155.7 19.7 130 46-209 73-208 (870)
142 PF00271 Helicase_C: Helicase 99.7 4.3E-17 9.4E-22 118.8 7.6 77 351-430 2-78 (78)
143 KOG0953 Mitochondrial RNA heli 99.7 4.3E-16 9.3E-21 145.2 14.0 278 72-455 194-486 (700)
144 PRK12902 secA preprotein trans 99.7 3.9E-15 8.4E-20 148.8 20.7 130 46-209 82-217 (939)
145 PF04851 ResIII: Type III rest 99.7 1.9E-16 4.1E-21 137.0 10.1 147 50-213 3-162 (184)
146 KOG0951 RNA helicase BRR2, DEA 99.7 9E-15 1.9E-19 147.9 22.5 330 50-458 1143-1510(1674)
147 KOG0925 mRNA splicing factor A 99.7 2.1E-14 4.5E-19 131.9 22.5 327 21-442 24-387 (699)
148 cd00046 DEXDc DEAD-like helica 99.6 1.7E-14 3.7E-19 118.9 16.4 122 70-216 1-122 (144)
149 KOG0388 SNF2 family DNA-depend 99.6 2.4E-14 5.3E-19 136.9 19.2 121 316-439 1026-1149(1185)
150 KOG4439 RNA polymerase II tran 99.6 7.1E-14 1.5E-18 133.9 20.4 145 316-477 727-877 (901)
151 KOG0386 Chromatin remodeling c 99.6 8.4E-15 1.8E-19 145.3 13.9 369 49-450 393-844 (1157)
152 KOG1002 Nucleotide excision re 99.6 1.4E-13 3.1E-18 126.7 17.9 126 333-477 639-768 (791)
153 KOG0391 SNF2 family DNA-depend 99.6 4.2E-13 9.1E-18 134.7 21.3 124 331-461 1275-1400(1958)
154 PRK12901 secA preprotein trans 99.5 1E-13 2.2E-18 140.3 16.1 124 315-444 609-743 (1112)
155 smart00490 HELICc helicase sup 99.5 2.1E-14 4.5E-19 106.0 8.2 81 347-430 2-82 (82)
156 PF06862 DUF1253: Protein of u 99.5 2.9E-12 6.2E-17 120.9 24.2 262 172-452 131-425 (442)
157 smart00488 DEXDc2 DEAD-like he 99.5 8.7E-14 1.9E-18 127.4 12.7 79 46-125 5-85 (289)
158 smart00489 DEXDc3 DEAD-like he 99.5 8.7E-14 1.9E-18 127.4 12.7 79 46-125 5-85 (289)
159 TIGR02562 cas3_yersinia CRISPR 99.5 1.4E-12 3E-17 132.9 21.0 354 51-447 409-899 (1110)
160 PRK14873 primosome assembly pr 99.5 1.4E-13 3E-18 138.5 13.8 104 73-208 164-268 (665)
161 COG0610 Type I site-specific r 99.5 7.8E-13 1.7E-17 139.0 19.8 123 69-218 273-397 (962)
162 COG0553 HepA Superfamily II DN 99.4 9.8E-12 2.1E-16 134.0 17.3 132 318-452 692-830 (866)
163 PF02399 Herpes_ori_bp: Origin 99.3 3.2E-10 6.8E-15 113.1 22.7 294 70-446 50-392 (824)
164 PF07652 Flavi_DEAD: Flaviviru 99.3 1.9E-11 4.1E-16 96.0 11.1 105 68-209 3-107 (148)
165 KOG1015 Transcription regulato 99.3 1.2E-10 2.5E-15 115.5 18.1 124 320-443 1128-1276(1567)
166 KOG1133 Helicase of the DEAD s 99.3 6.4E-09 1.4E-13 100.5 27.6 110 330-442 627-780 (821)
167 PF00176 SNF2_N: SNF2 family N 99.2 2.1E-11 4.4E-16 114.2 8.5 130 54-209 1-146 (299)
168 KOG2340 Uncharacterized conser 99.2 7.6E-10 1.6E-14 103.4 18.3 379 49-451 215-677 (698)
169 COG0653 SecA Preprotein transl 99.2 3E-10 6.5E-15 114.0 13.8 127 50-209 80-212 (822)
170 PF07517 SecA_DEAD: SecA DEAD- 99.0 1.4E-08 3.1E-13 90.4 13.8 131 46-210 74-210 (266)
171 KOG1131 RNA polymerase II tran 99.0 1.3E-07 2.7E-12 88.8 20.1 78 46-123 12-89 (755)
172 PF13307 Helicase_C_2: Helicas 98.9 3.3E-09 7.1E-14 89.2 6.6 108 330-441 7-149 (167)
173 PF13086 AAA_11: AAA domain; P 98.8 1.6E-08 3.4E-13 91.0 7.5 70 50-123 1-75 (236)
174 KOG0921 Dosage compensation co 98.8 5.8E-08 1.3E-12 96.5 10.9 114 332-446 643-778 (1282)
175 PRK15483 type III restriction- 98.7 1.1E-07 2.4E-12 98.1 13.2 72 385-456 501-582 (986)
176 KOG1132 Helicase of the DEAD s 98.7 8.7E-08 1.9E-12 95.5 9.8 160 46-209 18-259 (945)
177 KOG0952 DNA/RNA helicase MER3/ 98.5 2.4E-08 5.2E-13 100.9 1.3 132 50-210 927-1059(1230)
178 KOG1802 RNA helicase nonsense 98.4 2.3E-06 4.9E-11 82.9 11.8 85 43-138 403-487 (935)
179 KOG1016 Predicted DNA helicase 98.3 4.2E-05 9.1E-10 75.6 18.2 119 332-450 719-855 (1387)
180 COG3587 Restriction endonuclea 98.3 1.2E-05 2.7E-10 80.4 14.1 77 384-460 482-571 (985)
181 PF13245 AAA_19: Part of AAA d 98.3 4.4E-06 9.6E-11 59.4 7.4 53 69-121 10-62 (76)
182 smart00492 HELICc3 helicase su 98.3 5.2E-06 1.1E-10 67.1 8.3 73 369-441 31-137 (141)
183 PF02562 PhoH: PhoH-like prote 98.2 1.8E-06 4E-11 73.8 5.9 59 49-113 3-61 (205)
184 PF13604 AAA_30: AAA domain; P 98.2 4E-06 8.6E-11 72.5 7.1 64 50-120 1-65 (196)
185 smart00491 HELICc2 helicase su 98.2 5.8E-06 1.3E-10 67.0 7.6 96 344-441 3-138 (142)
186 KOG1001 Helicase-like transcri 98.2 1E-05 2.2E-10 81.9 10.3 102 333-437 540-643 (674)
187 KOG1803 DNA helicase [Replicat 98.2 7.4E-06 1.6E-10 79.0 8.7 66 49-122 184-250 (649)
188 PF13872 AAA_34: P-loop contai 98.2 8.3E-06 1.8E-10 73.1 8.4 134 50-212 37-187 (303)
189 PF12340 DUF3638: Protein of u 98.1 1.3E-05 2.9E-10 69.2 8.8 156 35-211 10-186 (229)
190 TIGR00376 DNA helicase, putati 98.1 2.2E-05 4.7E-10 80.2 11.5 69 49-124 156-224 (637)
191 PF09848 DUF2075: Uncharacteri 98.0 2E-05 4.3E-10 75.1 7.7 52 71-124 3-54 (352)
192 TIGR00596 rad1 DNA repair prot 98.0 8E-05 1.7E-09 77.3 12.4 53 171-224 6-58 (814)
193 PRK10875 recD exonuclease V su 97.8 0.00016 3.4E-09 73.2 11.7 69 52-125 154-223 (615)
194 KOG1805 DNA replication helica 97.8 0.00017 3.6E-09 73.5 11.4 151 35-210 658-809 (1100)
195 PF00580 UvrD-helicase: UvrD/R 97.8 5.3E-05 1.2E-09 71.3 7.4 70 51-126 1-70 (315)
196 PRK10536 hypothetical protein; 97.8 6.1E-05 1.3E-09 66.5 6.9 60 47-112 56-115 (262)
197 TIGR01447 recD exodeoxyribonuc 97.8 0.00015 3.3E-09 73.0 10.4 67 53-124 148-216 (586)
198 COG3421 Uncharacterized protei 97.7 0.00048 1E-08 66.7 12.0 107 74-211 2-126 (812)
199 TIGR01448 recD_rel helicase, p 97.7 0.00038 8.2E-09 72.4 11.7 66 46-118 320-385 (720)
200 TIGR02768 TraA_Ti Ti-type conj 97.5 0.0016 3.4E-08 68.1 13.3 62 50-118 352-413 (744)
201 PRK11054 helD DNA helicase IV; 97.5 0.00058 1.3E-08 70.3 9.5 85 47-137 193-277 (684)
202 PRK12723 flagellar biosynthesi 97.4 0.0015 3.2E-08 62.3 11.2 60 70-132 175-236 (388)
203 PRK10919 ATP-dependent DNA hel 97.4 0.00038 8.2E-09 72.1 7.6 82 50-137 2-86 (672)
204 PRK13889 conjugal transfer rel 97.4 0.0017 3.6E-08 69.1 12.2 63 46-117 343-406 (988)
205 KOG0383 Predicted helicase [Ge 97.4 1.4E-05 3E-10 80.0 -3.0 78 317-398 614-696 (696)
206 TIGR01075 uvrD DNA helicase II 97.4 0.00069 1.5E-08 71.1 8.8 72 49-126 3-74 (715)
207 PRK13826 Dtr system oriT relax 97.3 0.0038 8.2E-08 67.0 13.5 75 35-117 367-441 (1102)
208 KOG0989 Replication factor C, 97.2 0.00071 1.5E-08 60.4 6.0 38 54-91 40-79 (346)
209 TIGR01074 rep ATP-dependent DN 97.2 0.0015 3.2E-08 68.3 9.3 70 51-126 2-71 (664)
210 PRK11773 uvrD DNA-dependent he 97.1 0.00098 2.1E-08 69.9 7.3 83 49-137 8-92 (721)
211 PF13401 AAA_22: AAA domain; P 97.1 0.0039 8.5E-08 50.0 9.1 20 69-88 4-23 (131)
212 COG1419 FlhF Flagellar GTP-bin 97.1 0.0059 1.3E-07 57.4 10.9 65 69-136 203-267 (407)
213 PRK06526 transposase; Provisio 97.1 0.0031 6.7E-08 56.7 8.7 37 69-109 98-134 (254)
214 PF05970 PIF1: PIF1-like helic 97.0 0.0018 4E-08 61.9 7.0 63 50-116 1-65 (364)
215 PRK04296 thymidine kinase; Pro 97.0 0.0015 3.3E-08 56.2 5.8 36 70-109 3-38 (190)
216 PF00448 SRP54: SRP54-type pro 96.9 0.006 1.3E-07 52.6 9.1 61 71-136 3-63 (196)
217 PRK14722 flhF flagellar biosyn 96.9 0.0061 1.3E-07 57.7 9.6 62 68-132 136-197 (374)
218 COG1484 DnaC DNA replication p 96.9 0.0049 1.1E-07 55.5 8.4 52 66-122 102-153 (254)
219 PF13871 Helicase_C_4: Helicas 96.8 0.0034 7.4E-08 56.4 7.0 58 376-433 52-117 (278)
220 TIGR01073 pcrA ATP-dependent D 96.8 0.003 6.5E-08 66.5 7.5 83 49-137 3-87 (726)
221 cd00009 AAA The AAA+ (ATPases 96.7 0.0092 2E-07 48.7 8.6 20 69-88 19-38 (151)
222 PF00308 Bac_DnaA: Bacterial d 96.7 0.021 4.6E-07 50.3 10.5 39 70-110 35-73 (219)
223 PF03354 Terminase_1: Phage Te 96.6 0.0096 2.1E-07 59.3 8.7 75 53-127 1-80 (477)
224 TIGR02760 TraI_TIGR conjugativ 96.5 0.098 2.1E-06 60.7 17.0 65 50-120 429-493 (1960)
225 COG1875 NYN ribonuclease and A 96.5 0.016 3.4E-07 53.4 8.5 64 46-114 224-289 (436)
226 PRK07952 DNA replication prote 96.3 0.021 4.5E-07 50.9 8.4 34 70-107 100-133 (244)
227 PRK14974 cell division protein 96.3 0.056 1.2E-06 50.6 11.3 48 71-122 142-192 (336)
228 TIGR03499 FlhF flagellar biosy 96.2 0.017 3.6E-07 53.2 7.3 38 69-108 194-231 (282)
229 PRK14087 dnaA chromosomal repl 96.2 0.098 2.1E-06 51.5 13.0 49 70-121 142-190 (450)
230 PRK08181 transposase; Validate 96.2 0.057 1.2E-06 49.0 10.5 45 68-117 105-149 (269)
231 PRK05707 DNA polymerase III su 96.1 0.042 9.1E-07 51.6 9.7 42 50-91 3-44 (328)
232 PF10593 Z1: Z1 domain; Inter 96.1 0.016 3.4E-07 51.6 6.3 113 343-461 94-212 (239)
233 smart00382 AAA ATPases associa 96.0 0.011 2.3E-07 47.9 4.9 42 69-114 2-43 (148)
234 PF01695 IstB_IS21: IstB-like 96.0 0.015 3.2E-07 49.3 5.8 46 66-116 44-89 (178)
235 cd01124 KaiC KaiC is a circadi 96.0 0.085 1.8E-06 45.2 10.7 48 72-124 2-49 (187)
236 PRK12377 putative replication 96.0 0.035 7.5E-07 49.7 8.3 44 70-118 102-145 (248)
237 COG2256 MGS1 ATPase related to 96.0 0.048 1E-06 51.1 9.1 19 70-88 49-67 (436)
238 PRK13709 conjugal transfer nic 96.0 0.046 1E-06 61.8 10.7 66 49-117 966-1032(1747)
239 PRK14712 conjugal transfer nic 96.0 0.04 8.7E-07 61.5 10.0 65 50-117 835-900 (1623)
240 PF14617 CMS1: U3-containing 9 95.9 0.024 5.2E-07 50.4 6.8 86 100-207 125-211 (252)
241 TIGR02785 addA_Gpos recombinat 95.9 0.042 9.2E-07 61.2 10.3 124 51-208 2-126 (1232)
242 PTZ00112 origin recognition co 95.9 0.1 2.2E-06 54.4 11.9 43 51-94 759-805 (1164)
243 PF02456 Adeno_IVa2: Adenoviru 95.9 0.017 3.6E-07 51.9 5.6 39 72-115 90-131 (369)
244 COG1435 Tdk Thymidine kinase [ 95.9 0.042 9.2E-07 46.1 7.6 39 70-112 5-43 (201)
245 PRK14956 DNA polymerase III su 95.9 0.028 6E-07 54.9 7.5 20 71-90 42-61 (484)
246 PHA03333 putative ATPase subun 95.9 0.13 2.9E-06 51.9 12.2 73 51-127 170-242 (752)
247 cd01120 RecA-like_NTPases RecA 95.8 0.16 3.4E-06 42.2 11.3 39 72-114 2-40 (165)
248 COG3973 Superfamily I DNA and 95.8 0.043 9.3E-07 53.9 8.1 87 34-125 189-284 (747)
249 PF05621 TniB: Bacterial TniB 95.8 0.044 9.5E-07 49.8 7.8 48 70-122 62-117 (302)
250 PF05496 RuvB_N: Holliday junc 95.7 0.017 3.7E-07 50.0 4.9 19 70-88 51-69 (233)
251 KOG0298 DEAD box-containing he 95.7 0.024 5.1E-07 60.2 6.7 151 69-283 374-557 (1394)
252 TIGR02688 conserved hypothetic 95.6 0.055 1.2E-06 51.6 8.3 53 35-88 172-228 (449)
253 PRK08116 hypothetical protein; 95.6 0.18 4E-06 45.9 11.4 42 70-116 115-156 (268)
254 PRK11889 flhF flagellar biosyn 95.6 0.11 2.5E-06 49.2 10.0 36 70-109 242-277 (436)
255 TIGR02881 spore_V_K stage V sp 95.6 0.035 7.6E-07 50.5 6.7 19 70-88 43-61 (261)
256 PRK06893 DNA replication initi 95.6 0.084 1.8E-06 46.9 9.0 37 69-109 39-75 (229)
257 PRK05703 flhF flagellar biosyn 95.6 0.054 1.2E-06 52.8 8.2 38 69-108 221-258 (424)
258 COG1474 CDC6 Cdc6-related prot 95.5 0.044 9.5E-07 52.2 7.3 46 51-97 21-69 (366)
259 PF06309 Torsin: Torsin; Inte 95.5 0.12 2.6E-06 40.4 8.2 51 73-124 57-112 (127)
260 PRK09183 transposase/IS protei 95.5 0.33 7.1E-06 44.0 12.6 44 68-116 101-144 (259)
261 PRK08769 DNA polymerase III su 95.4 0.093 2E-06 48.9 9.0 42 49-90 3-47 (319)
262 COG4962 CpaF Flp pilus assembl 95.3 0.032 6.9E-07 51.3 5.3 62 46-115 153-214 (355)
263 PRK11823 DNA repair protein Ra 95.3 0.072 1.6E-06 52.4 8.3 53 67-124 78-130 (446)
264 PRK10917 ATP-dependent DNA hel 95.3 0.092 2E-06 54.9 9.3 83 331-413 309-393 (681)
265 PRK06645 DNA polymerase III su 95.2 0.043 9.4E-07 54.5 6.5 21 70-90 44-64 (507)
266 COG4626 Phage terminase-like p 95.2 0.25 5.4E-06 48.6 11.3 78 50-127 61-144 (546)
267 PRK05642 DNA replication initi 95.2 0.15 3.3E-06 45.4 9.4 36 70-109 46-81 (234)
268 PRK13894 conjugal transfer ATP 95.2 0.058 1.3E-06 50.3 6.9 59 50-113 132-190 (319)
269 PF06733 DEAD_2: DEAD_2; Inte 95.2 0.01 2.3E-07 50.3 1.7 51 161-211 108-159 (174)
270 TIGR00362 DnaA chromosomal rep 95.1 0.19 4.1E-06 49.1 10.6 38 70-109 137-174 (405)
271 PRK14960 DNA polymerase III su 95.1 0.1 2.2E-06 52.9 8.7 21 70-90 38-58 (702)
272 PRK07003 DNA polymerase III su 95.1 0.17 3.7E-06 52.1 10.0 18 71-88 40-57 (830)
273 PRK14723 flhF flagellar biosyn 95.0 0.078 1.7E-06 54.8 7.8 63 69-134 185-247 (767)
274 PRK14964 DNA polymerase III su 95.0 0.11 2.4E-06 51.3 8.6 21 70-90 36-56 (491)
275 PRK06835 DNA replication prote 95.0 0.27 5.9E-06 46.1 10.8 44 69-117 183-226 (329)
276 PF05127 Helicase_RecD: Helica 95.0 0.0096 2.1E-07 49.8 1.0 54 73-129 1-54 (177)
277 PLN03025 replication factor C 95.0 0.13 2.8E-06 48.4 8.7 19 70-88 35-53 (319)
278 PRK00149 dnaA chromosomal repl 95.0 0.17 3.6E-06 50.2 9.7 44 70-116 149-192 (450)
279 PRK12727 flagellar biosynthesi 94.9 0.27 5.9E-06 48.6 10.8 26 67-92 348-373 (559)
280 COG0593 DnaA ATPase involved i 94.9 0.29 6.2E-06 46.9 10.7 40 69-110 113-152 (408)
281 PHA02533 17 large terminase pr 94.9 0.12 2.7E-06 51.8 8.7 71 50-126 59-129 (534)
282 PRK14086 dnaA chromosomal repl 94.9 0.73 1.6E-05 46.7 14.0 45 70-117 315-359 (617)
283 cd01121 Sms Sms (bacterial rad 94.9 0.12 2.6E-06 49.3 8.3 52 68-124 81-132 (372)
284 PRK14873 primosome assembly pr 94.9 0.22 4.7E-06 51.4 10.4 93 317-411 171-265 (665)
285 cd01122 GP4d_helicase GP4d_hel 94.8 0.12 2.6E-06 47.4 7.9 41 66-109 27-67 (271)
286 KOG1513 Nuclear helicase MOP-3 94.8 0.018 3.9E-07 58.0 2.5 83 49-135 263-351 (1300)
287 KOG0991 Replication factor C, 94.8 0.13 2.7E-06 44.5 7.0 20 70-89 49-68 (333)
288 COG1444 Predicted P-loop ATPas 94.8 0.5 1.1E-05 48.7 12.5 79 51-131 212-291 (758)
289 TIGR02760 TraI_TIGR conjugativ 94.7 0.13 2.8E-06 59.8 9.4 64 49-117 1018-1084(1960)
290 PRK07994 DNA polymerase III su 94.7 0.069 1.5E-06 54.5 6.4 19 72-90 41-59 (647)
291 PF13177 DNA_pol3_delta2: DNA 94.7 0.18 3.9E-06 42.1 7.9 23 70-92 20-42 (162)
292 PRK00411 cdc6 cell division co 94.7 0.11 2.3E-06 50.7 7.6 25 69-94 55-79 (394)
293 PRK13833 conjugal transfer pro 94.6 0.076 1.7E-06 49.4 6.1 59 50-113 128-186 (323)
294 TIGR00643 recG ATP-dependent D 94.6 0.36 7.8E-06 50.1 11.6 83 331-413 283-367 (630)
295 TIGR02782 TrbB_P P-type conjug 94.5 0.16 3.4E-06 47.2 7.8 59 50-113 116-174 (299)
296 PRK14961 DNA polymerase III su 94.4 0.077 1.7E-06 50.9 5.8 18 71-88 40-57 (363)
297 PRK08939 primosomal protein Dn 94.4 0.16 3.5E-06 47.1 7.7 36 69-108 156-191 (306)
298 PRK08699 DNA polymerase III su 94.4 0.5 1.1E-05 44.3 11.0 41 51-91 2-43 (325)
299 PHA02544 44 clamp loader, smal 94.4 0.47 1E-05 44.6 11.0 16 72-87 46-61 (316)
300 PRK14957 DNA polymerase III su 94.4 0.12 2.7E-06 51.7 7.2 20 71-90 40-59 (546)
301 COG2804 PulE Type II secretory 94.4 0.061 1.3E-06 52.1 4.9 42 51-96 242-284 (500)
302 PRK14962 DNA polymerase III su 94.4 0.24 5.1E-06 49.1 9.1 20 70-89 37-56 (472)
303 PRK06921 hypothetical protein; 94.3 0.21 4.5E-06 45.5 8.0 45 69-117 117-161 (266)
304 PRK14088 dnaA chromosomal repl 94.3 0.67 1.5E-05 45.6 12.1 38 70-109 131-168 (440)
305 PRK14949 DNA polymerase III su 94.2 0.093 2E-06 55.0 6.1 17 72-88 41-57 (944)
306 PRK12422 chromosomal replicati 94.2 0.24 5.2E-06 48.7 8.7 36 70-109 142-177 (445)
307 PTZ00293 thymidine kinase; Pro 94.2 0.1 2.3E-06 45.0 5.5 39 69-111 4-42 (211)
308 TIGR01547 phage_term_2 phage t 94.2 0.2 4.4E-06 48.8 8.2 59 72-131 4-63 (396)
309 PRK14958 DNA polymerase III su 94.2 0.17 3.7E-06 50.6 7.7 20 70-89 39-58 (509)
310 KOG0701 dsRNA-specific nucleas 94.2 0.032 7E-07 61.6 2.8 96 332-429 292-398 (1606)
311 TIGR00595 priA primosomal prot 94.1 0.3 6.5E-06 49.0 9.4 78 331-411 24-101 (505)
312 PRK14955 DNA polymerase III su 94.1 0.23 4.9E-06 48.3 8.4 20 70-89 39-58 (397)
313 PHA03368 DNA packaging termina 94.1 0.98 2.1E-05 45.8 12.6 56 69-126 254-309 (738)
314 PRK05580 primosome assembly pr 94.1 0.34 7.4E-06 50.6 9.9 78 332-412 190-267 (679)
315 PRK14952 DNA polymerase III su 94.0 0.12 2.5E-06 52.4 6.2 19 72-90 38-56 (584)
316 PRK12726 flagellar biosynthesi 94.0 0.17 3.6E-06 47.9 6.7 36 69-108 206-241 (407)
317 PRK04195 replication factor C 93.9 0.24 5.3E-06 49.5 8.4 20 69-88 39-58 (482)
318 PRK14963 DNA polymerase III su 93.9 0.34 7.3E-06 48.4 9.2 23 71-94 38-60 (504)
319 TIGR02012 tigrfam_recA protein 93.9 0.17 3.7E-06 47.0 6.6 46 66-115 52-97 (321)
320 cd00983 recA RecA is a bacter 93.9 0.14 2.9E-06 47.7 5.9 45 68-116 54-98 (325)
321 PRK07993 DNA polymerase III su 93.8 0.3 6.4E-06 46.1 8.3 41 50-90 2-45 (334)
322 PRK12323 DNA polymerase III su 93.8 0.18 3.9E-06 51.1 7.0 20 71-90 40-59 (700)
323 PRK09111 DNA polymerase III su 93.7 0.19 4.2E-06 51.2 7.3 22 70-91 47-68 (598)
324 TIGR00767 rho transcription te 93.7 0.16 3.5E-06 48.3 6.2 29 65-94 164-192 (415)
325 TIGR03877 thermo_KaiC_1 KaiC d 93.7 0.13 2.8E-06 46.0 5.5 55 66-125 18-72 (237)
326 PRK05563 DNA polymerase III su 93.7 0.23 5E-06 50.4 7.8 21 70-90 39-59 (559)
327 KOG0738 AAA+-type ATPase [Post 93.6 0.15 3.2E-06 47.6 5.6 40 70-117 246-285 (491)
328 COG0210 UvrD Superfamily I DNA 93.6 0.19 4.1E-06 52.6 7.3 82 50-137 2-86 (655)
329 COG1110 Reverse gyrase [DNA re 93.6 0.27 5.8E-06 51.6 8.0 86 325-411 118-211 (1187)
330 PRK07764 DNA polymerase III su 93.6 0.22 4.8E-06 52.7 7.7 21 70-90 38-58 (824)
331 PRK14965 DNA polymerase III su 93.5 0.31 6.7E-06 49.8 8.3 19 70-88 39-57 (576)
332 COG1198 PriA Primosomal protei 93.5 0.39 8.5E-06 49.7 9.0 97 311-410 222-320 (730)
333 TIGR00580 mfd transcription-re 93.5 0.44 9.4E-06 51.3 9.6 82 331-412 499-582 (926)
334 PRK09354 recA recombinase A; P 93.5 0.32 6.9E-06 45.7 7.6 44 68-115 59-102 (349)
335 PF06745 KaiC: KaiC; InterPro 93.4 0.14 3.1E-06 45.4 5.2 53 68-124 18-70 (226)
336 PRK14959 DNA polymerase III su 93.3 0.31 6.8E-06 49.4 7.7 21 70-90 39-59 (624)
337 PRK14951 DNA polymerase III su 93.2 0.36 7.7E-06 49.3 8.2 20 71-90 40-59 (618)
338 PRK05896 DNA polymerase III su 93.2 0.24 5.3E-06 50.0 6.8 21 70-90 39-59 (605)
339 COG2805 PilT Tfp pilus assembl 93.2 0.11 2.3E-06 46.8 3.8 27 71-98 127-153 (353)
340 KOG1807 Helicases [Replication 93.1 0.14 3.1E-06 51.7 5.0 70 50-123 378-449 (1025)
341 PF05876 Terminase_GpA: Phage 93.1 0.13 2.9E-06 52.1 4.9 72 50-126 16-88 (557)
342 KOG2170 ATPase of the AAA+ sup 93.0 0.47 1E-05 42.9 7.6 26 72-98 113-138 (344)
343 TIGR02397 dnaX_nterm DNA polym 93.0 0.6 1.3E-05 44.7 9.2 19 70-88 37-55 (355)
344 PRK08691 DNA polymerase III su 93.0 0.33 7.2E-06 49.7 7.5 21 70-90 39-59 (709)
345 cd01130 VirB11-like_ATPase Typ 93.0 0.3 6.5E-06 41.8 6.4 34 50-86 9-42 (186)
346 COG1200 RecG RecG-like helicas 93.0 0.55 1.2E-05 47.4 8.8 92 320-411 298-392 (677)
347 PRK12724 flagellar biosynthesi 92.9 1.2 2.6E-05 43.0 10.7 35 71-108 225-259 (432)
348 TIGR00678 holB DNA polymerase 92.9 0.76 1.7E-05 39.4 8.8 20 70-89 15-34 (188)
349 PRK09376 rho transcription ter 92.9 0.47 1E-05 45.1 7.8 32 64-96 164-195 (416)
350 PF03796 DnaB_C: DnaB-like hel 92.9 0.63 1.4E-05 42.3 8.6 47 60-109 10-56 (259)
351 TIGR02640 gas_vesic_GvpN gas v 92.8 0.091 2E-06 47.8 3.0 37 52-88 4-40 (262)
352 PRK08451 DNA polymerase III su 92.8 0.64 1.4E-05 46.5 9.1 19 70-88 37-55 (535)
353 PRK13342 recombination factor 92.7 0.41 8.8E-06 46.9 7.6 19 70-88 37-55 (413)
354 PRK14954 DNA polymerase III su 92.7 0.25 5.4E-06 50.5 6.3 21 70-90 39-59 (620)
355 PRK14950 DNA polymerase III su 92.7 0.44 9.5E-06 48.9 8.1 20 70-89 39-58 (585)
356 PRK06964 DNA polymerase III su 92.6 0.7 1.5E-05 43.6 8.7 40 51-90 2-42 (342)
357 COG1219 ClpX ATP-dependent pro 92.6 0.094 2E-06 47.5 2.7 19 69-87 97-115 (408)
358 COG0466 Lon ATP-dependent Lon 92.6 0.74 1.6E-05 46.7 9.1 51 171-225 394-445 (782)
359 PRK06090 DNA polymerase III su 92.5 0.27 6E-06 45.7 5.8 41 50-90 3-46 (319)
360 TIGR02784 addA_alphas double-s 92.5 0.3 6.5E-06 54.5 7.1 57 69-126 10-66 (1141)
361 TIGR03878 thermo_KaiC_2 KaiC d 92.5 0.41 9E-06 43.4 6.8 37 68-108 35-71 (259)
362 cd01128 rho_factor Transcripti 92.5 0.24 5.3E-06 44.4 5.2 21 65-85 12-32 (249)
363 PRK10689 transcription-repair 92.4 0.67 1.5E-05 51.2 9.5 81 331-411 648-730 (1147)
364 PRK14948 DNA polymerase III su 92.4 0.37 8E-06 49.5 7.1 21 70-90 39-59 (620)
365 PRK13851 type IV secretion sys 92.4 0.25 5.4E-06 46.6 5.4 41 68-113 161-201 (344)
366 PRK14721 flhF flagellar biosyn 92.3 0.58 1.2E-05 45.3 7.9 67 68-137 190-256 (420)
367 COG0467 RAD55 RecA-superfamily 92.3 0.3 6.4E-06 44.5 5.8 55 67-126 21-75 (260)
368 PRK05973 replicative DNA helic 92.2 0.28 6E-06 43.5 5.1 57 63-124 58-114 (237)
369 PRK06731 flhF flagellar biosyn 92.1 2.3 4.9E-05 38.7 11.0 22 70-91 76-97 (270)
370 PF01443 Viral_helicase1: Vira 92.1 0.1 2.2E-06 46.6 2.4 14 72-85 1-14 (234)
371 PRK07940 DNA polymerase III su 92.1 0.61 1.3E-05 45.0 7.8 21 70-90 37-57 (394)
372 PRK07133 DNA polymerase III su 92.0 0.23 5E-06 51.2 5.0 19 71-89 42-60 (725)
373 PRK06995 flhF flagellar biosyn 92.0 0.63 1.4E-05 45.9 7.8 63 69-135 256-319 (484)
374 PRK00440 rfc replication facto 91.9 0.76 1.6E-05 43.2 8.2 19 70-88 39-57 (319)
375 COG1197 Mfd Transcription-repa 91.7 0.76 1.6E-05 49.4 8.4 80 331-410 642-723 (1139)
376 PRK08533 flagellar accessory p 91.5 0.46 1E-05 42.2 5.9 52 68-124 23-74 (230)
377 PRK04328 hypothetical protein; 91.5 0.39 8.4E-06 43.3 5.5 53 68-125 22-74 (249)
378 COG0470 HolB ATPase involved i 91.4 0.74 1.6E-05 43.4 7.6 23 69-91 23-46 (325)
379 PRK12608 transcription termina 91.4 0.66 1.4E-05 43.9 7.0 42 53-96 118-159 (380)
380 PRK14971 DNA polymerase III su 91.4 0.42 9.2E-06 49.0 6.2 19 70-88 40-58 (614)
381 PRK14969 DNA polymerase III su 91.4 0.72 1.6E-05 46.5 7.7 20 71-90 40-59 (527)
382 COG1074 RecB ATP-dependent exo 91.4 0.38 8.2E-06 53.4 6.2 57 68-124 15-72 (1139)
383 KOG1132 Helicase of the DEAD s 91.4 1.7 3.7E-05 45.2 10.1 110 331-441 560-721 (945)
384 PRK00771 signal recognition pa 91.2 0.75 1.6E-05 44.9 7.4 35 70-108 96-130 (437)
385 TIGR00064 ftsY signal recognit 91.2 1.4 2.9E-05 40.3 8.7 35 70-108 73-107 (272)
386 PRK13900 type IV secretion sys 91.1 0.24 5.2E-06 46.6 3.8 41 68-113 159-199 (332)
387 PRK06305 DNA polymerase III su 91.1 0.71 1.5E-05 45.6 7.2 21 70-90 40-60 (451)
388 cd00984 DnaB_C DnaB helicase C 91.0 0.45 9.7E-06 42.7 5.4 44 62-108 6-49 (242)
389 cd01129 PulE-GspE PulE/GspE Th 90.7 0.61 1.3E-05 42.4 6.0 46 43-94 59-104 (264)
390 KOG0739 AAA+-type ATPase [Post 90.7 0.84 1.8E-05 41.2 6.5 47 70-124 167-213 (439)
391 TIGR02524 dot_icm_DotB Dot/Icm 90.7 0.39 8.4E-06 45.7 4.8 26 69-95 134-159 (358)
392 TIGR00416 sms DNA repair prote 90.6 1 2.2E-05 44.5 7.8 53 67-124 92-144 (454)
393 PRK14970 DNA polymerase III su 90.6 1.1 2.3E-05 43.2 8.0 19 70-88 40-58 (367)
394 PRK06647 DNA polymerase III su 90.5 0.52 1.1E-05 47.8 5.8 19 70-88 39-57 (563)
395 KOG0744 AAA+-type ATPase [Post 90.4 2.7 5.8E-05 38.6 9.4 70 70-140 178-260 (423)
396 KOG1806 DEAD box containing he 90.4 0.46 9.9E-06 49.8 5.3 74 47-126 735-808 (1320)
397 cd01126 TraG_VirD4 The TraG/Tr 90.4 0.24 5.3E-06 48.0 3.3 57 71-137 1-57 (384)
398 PF12846 AAA_10: AAA-like doma 90.4 0.39 8.4E-06 44.7 4.6 40 70-113 2-41 (304)
399 KOG2004 Mitochondrial ATP-depe 90.4 2.3 4.9E-05 43.4 9.8 51 171-225 482-533 (906)
400 PHA00350 putative assembly pro 90.3 0.71 1.5E-05 44.2 6.2 24 72-95 4-28 (399)
401 PF02534 T4SS-DNA_transf: Type 90.1 0.33 7.1E-06 48.5 4.1 49 70-124 45-93 (469)
402 KOG0331 ATP-dependent RNA heli 90.1 2.1 4.5E-05 42.4 9.2 94 79-203 322-415 (519)
403 TIGR00959 ffh signal recogniti 90.1 2.3 5E-05 41.5 9.6 59 71-135 101-161 (428)
404 PRK07471 DNA polymerase III su 90.0 0.52 1.1E-05 45.0 5.1 39 54-92 23-64 (365)
405 PF01580 FtsK_SpoIIIE: FtsK/Sp 89.9 0.4 8.6E-06 41.8 4.0 42 69-110 38-79 (205)
406 PF13191 AAA_16: AAA ATPase do 89.9 0.97 2.1E-05 38.4 6.4 45 52-97 5-51 (185)
407 KOG0058 Peptide exporter, ABC 89.9 0.84 1.8E-05 46.5 6.5 146 66-226 491-651 (716)
408 TIGR01425 SRP54_euk signal rec 89.9 2.8 6.1E-05 40.8 9.9 60 71-137 102-163 (429)
409 cd03115 SRP The signal recogni 89.8 2.5 5.4E-05 35.6 8.7 33 72-108 3-35 (173)
410 PRK07399 DNA polymerase III su 89.8 0.93 2E-05 42.4 6.4 21 70-90 27-47 (314)
411 TIGR03819 heli_sec_ATPase heli 89.8 0.96 2.1E-05 42.8 6.6 63 41-113 155-217 (340)
412 TIGR02880 cbbX_cfxQ probable R 89.7 0.66 1.4E-05 42.7 5.4 20 69-88 58-77 (284)
413 PHA00012 I assembly protein 89.5 1.1 2.3E-05 41.4 6.3 26 72-97 4-29 (361)
414 PRK10867 signal recognition pa 89.4 2.3 5E-05 41.6 9.0 59 71-135 102-162 (433)
415 PF01935 DUF87: Domain of unkn 89.4 0.61 1.3E-05 41.4 4.8 41 69-112 23-63 (229)
416 PRK14953 DNA polymerase III su 89.3 1.3 2.8E-05 44.2 7.4 19 71-89 40-58 (486)
417 PRK13341 recombination factor 89.2 1.1 2.4E-05 46.9 7.2 19 70-88 53-71 (725)
418 PRK06871 DNA polymerase III su 89.2 1.7 3.6E-05 40.7 7.7 42 51-92 3-47 (325)
419 PRK10416 signal recognition pa 89.2 4.5 9.8E-05 37.9 10.6 35 70-108 115-149 (318)
420 cd01131 PilT Pilus retraction 89.2 0.58 1.3E-05 40.5 4.4 36 72-110 4-39 (198)
421 PRK13897 type IV secretion sys 89.2 0.51 1.1E-05 48.1 4.6 58 70-137 159-216 (606)
422 TIGR02655 circ_KaiC circadian 89.2 0.68 1.5E-05 46.3 5.4 62 58-124 251-313 (484)
423 PRK13531 regulatory ATPase Rav 89.1 0.4 8.7E-06 47.0 3.6 36 53-88 23-58 (498)
424 CHL00181 cbbX CbbX; Provisiona 89.1 0.83 1.8E-05 42.1 5.6 23 69-91 59-81 (287)
425 PF13481 AAA_25: AAA domain; P 89.0 0.99 2.1E-05 38.8 5.8 57 68-125 31-93 (193)
426 PF00437 T2SE: Type II/IV secr 88.9 0.34 7.4E-06 44.3 3.0 42 68-113 126-167 (270)
427 PF03237 Terminase_6: Terminas 88.8 3.6 7.8E-05 39.5 10.2 42 73-116 1-42 (384)
428 TIGR03881 KaiC_arch_4 KaiC dom 88.7 0.96 2.1E-05 40.2 5.6 54 66-124 17-70 (229)
429 COG2909 MalT ATP-dependent tra 88.7 1.3 2.9E-05 45.9 7.0 29 198-226 130-158 (894)
430 PRK10436 hypothetical protein; 88.7 0.85 1.8E-05 45.0 5.6 41 51-94 202-242 (462)
431 PF13555 AAA_29: P-loop contai 88.4 0.75 1.6E-05 31.0 3.5 17 69-85 23-39 (62)
432 PRK08903 DnaA regulatory inact 88.2 1.4 3.1E-05 39.1 6.4 20 69-88 42-61 (227)
433 TIGR02655 circ_KaiC circadian 88.1 0.86 1.9E-05 45.6 5.4 56 66-125 18-73 (484)
434 PF01078 Mg_chelatase: Magnesi 88.1 0.23 5E-06 42.6 1.2 19 68-86 21-39 (206)
435 PF04665 Pox_A32: Poxvirus A32 87.9 0.77 1.7E-05 40.7 4.3 36 70-109 14-49 (241)
436 TIGR02525 plasmid_TraJ plasmid 87.9 0.86 1.9E-05 43.5 4.9 26 69-95 149-174 (372)
437 TIGR03880 KaiC_arch_3 KaiC dom 87.9 1.1 2.3E-05 39.7 5.4 52 68-124 15-66 (224)
438 PHA02244 ATPase-like protein 87.8 0.64 1.4E-05 43.9 3.9 22 66-87 116-137 (383)
439 TIGR02238 recomb_DMC1 meiotic 87.8 1.2 2.6E-05 41.6 5.7 43 69-111 96-140 (313)
440 COG0630 VirB11 Type IV secreto 87.7 1.2 2.5E-05 41.7 5.6 57 49-113 126-182 (312)
441 TIGR02533 type_II_gspE general 87.6 1.1 2.4E-05 44.6 5.7 40 51-94 226-266 (486)
442 PF00158 Sigma54_activat: Sigm 87.5 1.2 2.6E-05 37.3 5.1 37 69-110 22-60 (168)
443 TIGR00631 uvrb excinuclease AB 87.4 4.7 0.0001 41.9 10.3 92 90-209 431-522 (655)
444 PF00004 AAA: ATPase family as 87.4 0.61 1.3E-05 37.0 3.2 17 72-88 1-17 (132)
445 TIGR02538 type_IV_pilB type IV 87.3 0.73 1.6E-05 47.0 4.4 46 43-94 295-340 (564)
446 PRK08727 hypothetical protein; 87.3 1.5 3.2E-05 39.1 5.9 35 70-108 42-76 (233)
447 TIGR02237 recomb_radB DNA repa 87.2 0.94 2E-05 39.6 4.5 38 69-110 12-49 (209)
448 KOG2228 Origin recognition com 87.1 6 0.00013 36.7 9.4 29 198-226 138-166 (408)
449 PRK06904 replicative DNA helic 86.9 4.8 0.0001 40.1 9.7 59 60-122 212-270 (472)
450 PF01637 Arch_ATPase: Archaeal 86.9 3.3 7.1E-05 36.6 8.0 17 69-85 20-36 (234)
451 TIGR02788 VirB11 P-type DNA tr 86.9 0.76 1.6E-05 42.9 3.9 18 68-85 143-160 (308)
452 cd00544 CobU Adenosylcobinamid 86.8 1.4 3.1E-05 36.9 5.2 46 72-124 2-47 (169)
453 cd01394 radB RadB. The archaea 86.8 1.4 3E-05 38.8 5.4 46 59-108 8-54 (218)
454 COG0552 FtsY Signal recognitio 86.8 5 0.00011 37.2 8.8 59 71-134 141-199 (340)
455 PRK06067 flagellar accessory p 86.8 1.4 3E-05 39.3 5.5 52 68-124 24-75 (234)
456 COG0513 SrmB Superfamily II DN 86.8 2.2 4.7E-05 43.1 7.4 73 335-411 102-182 (513)
457 COG1132 MdlB ABC-type multidru 86.7 2.6 5.6E-05 43.4 8.0 29 195-223 481-509 (567)
458 TIGR01420 pilT_fam pilus retra 86.6 1 2.2E-05 42.8 4.7 41 69-112 122-162 (343)
459 KOG0745 Putative ATP-dependent 86.6 0.54 1.2E-05 44.7 2.7 19 69-87 226-244 (564)
460 TIGR02639 ClpA ATP-dependent C 86.2 2.2 4.7E-05 45.2 7.3 82 68-210 202-287 (731)
461 PRK14701 reverse gyrase; Provi 86.1 2.5 5.5E-05 48.5 8.1 81 331-411 121-208 (1638)
462 PF03969 AFG1_ATPase: AFG1-lik 86.1 3.4 7.3E-05 39.5 7.8 18 68-85 61-78 (362)
463 PF13207 AAA_17: AAA domain; P 86.1 0.6 1.3E-05 36.6 2.4 17 72-88 2-18 (121)
464 TIGR00609 recB exodeoxyribonuc 86.0 1.6 3.5E-05 48.4 6.4 54 70-123 10-64 (1087)
465 PF01745 IPT: Isopentenyl tran 86.0 0.81 1.8E-05 39.3 3.2 19 72-90 4-22 (233)
466 PRK13850 type IV secretion sys 85.9 0.95 2.1E-05 46.8 4.3 58 69-136 139-196 (670)
467 PRK09361 radB DNA repair and r 85.8 1.2 2.7E-05 39.4 4.6 48 59-110 12-60 (225)
468 PF07728 AAA_5: AAA domain (dy 85.8 0.57 1.2E-05 37.8 2.2 18 71-88 1-18 (139)
469 PRK11331 5-methylcytosine-spec 85.7 0.69 1.5E-05 44.9 3.0 27 62-88 187-213 (459)
470 PRK09519 recA DNA recombinatio 85.7 2.8 6.1E-05 44.0 7.5 43 68-114 59-101 (790)
471 PHA00729 NTP-binding motif con 85.5 2.1 4.6E-05 37.5 5.7 20 70-89 18-37 (226)
472 KOG1513 Nuclear helicase MOP-3 85.4 0.88 1.9E-05 46.5 3.6 62 378-439 850-920 (1300)
473 TIGR03015 pepcterm_ATPase puta 85.4 1.8 4E-05 39.4 5.7 39 50-88 23-62 (269)
474 TIGR02928 orc1/cdc6 family rep 85.4 1.4 3E-05 42.4 5.0 25 69-94 40-64 (365)
475 PRK08058 DNA polymerase III su 85.2 1.7 3.7E-05 41.0 5.4 35 55-89 11-48 (329)
476 COG0606 Predicted ATPase with 85.1 0.54 1.2E-05 45.4 2.0 19 67-85 196-214 (490)
477 PF12775 AAA_7: P-loop contain 85.1 1.6 3.4E-05 39.9 5.0 18 68-85 32-49 (272)
478 KOG1533 Predicted GTPase [Gene 85.1 0.93 2E-05 39.4 3.2 24 72-96 5-28 (290)
479 COG2812 DnaX DNA polymerase II 85.0 2.2 4.7E-05 42.4 6.2 24 195-218 117-140 (515)
480 PHA02535 P terminase ATPase su 84.9 9.5 0.00021 38.5 10.5 86 34-126 122-207 (581)
481 COG1066 Sms Predicted ATP-depe 84.9 4.3 9.3E-05 38.7 7.6 52 68-125 92-143 (456)
482 PRK14729 miaA tRNA delta(2)-is 84.7 0.89 1.9E-05 41.9 3.2 21 69-89 4-24 (300)
483 KOG0333 U5 snRNP-like RNA heli 84.7 9.4 0.0002 37.6 9.9 73 101-202 517-590 (673)
484 PRK08084 DNA replication initi 84.7 1.5 3.3E-05 39.1 4.6 37 69-109 45-81 (235)
485 TIGR03743 SXT_TraD conjugative 84.6 2.4 5.2E-05 43.8 6.5 52 69-124 176-229 (634)
486 PF00154 RecA: recA bacterial 84.6 1.9 4.1E-05 40.2 5.2 46 69-118 53-98 (322)
487 KOG2028 ATPase related to the 84.6 1.9 4.2E-05 40.2 5.1 49 70-122 163-211 (554)
488 PRK04841 transcriptional regul 84.6 6.9 0.00015 42.9 10.6 28 198-225 122-149 (903)
489 TIGR01242 26Sp45 26S proteasom 84.5 0.79 1.7E-05 44.1 2.9 19 69-87 156-174 (364)
490 PRK13822 conjugal transfer cou 84.2 1.4 3.1E-05 45.4 4.7 60 69-138 224-283 (641)
491 PRK12402 replication factor C 84.2 0.81 1.7E-05 43.4 2.8 18 71-88 38-55 (337)
492 PF10412 TrwB_AAD_bind: Type I 84.2 1.1 2.4E-05 43.3 3.8 47 69-119 15-61 (386)
493 TIGR03420 DnaA_homol_Hda DnaA 84.1 1.6 3.5E-05 38.6 4.6 20 69-88 38-57 (226)
494 cd00268 DEADc DEAD-box helicas 84.1 8.4 0.00018 33.2 9.0 79 331-413 68-153 (203)
495 PF13238 AAA_18: AAA domain; P 84.0 0.64 1.4E-05 36.7 1.8 16 72-87 1-16 (129)
496 PF07724 AAA_2: AAA domain (Cd 84.0 0.9 1.9E-05 38.2 2.7 19 70-88 4-22 (171)
497 COG1111 MPH1 ERCC4-like helica 83.9 3.6 7.7E-05 40.2 6.8 124 327-456 54-188 (542)
498 COG4650 RtcR Sigma54-dependent 83.9 4.6 0.0001 36.4 7.0 41 46-86 184-225 (531)
499 PRK04537 ATP-dependent RNA hel 83.8 9.5 0.00021 39.2 10.4 78 101-206 257-334 (572)
500 TIGR03345 VI_ClpV1 type VI sec 83.8 3.9 8.5E-05 44.0 7.9 37 52-88 568-615 (852)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-59 Score=409.48 Aligned_cols=357 Identities=37% Similarity=0.546 Sum_probs=327.9
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
++.|.+.+++++.||..|++.|.++++.++. |+++|..|.||||||.+|++|+++.+.... +.++++|++||++|
T Consensus 67 gv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p-~~~~~lVLtPtREL 141 (476)
T KOG0330|consen 67 GVHPELLEACQELGWKKPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEP-KLFFALVLTPTREL 141 (476)
T ss_pred CcCHHHHHHHHHhCcCCCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCC-CCceEEEecCcHHH
Confidence 5999999999999999999999999999887 999999999999999999999999998864 45789999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc
Q 011620 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
+.|+.+.+..++...|+.+..+.||.....+... +.+.|+|+|+||++|++++.+.+.|
T Consensus 142 A~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~---------------------L~kkPhilVaTPGrL~dhl~~Tkgf 200 (476)
T KOG0330|consen 142 AQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQ---------------------LSKKPHILVATPGRLWDHLENTKGF 200 (476)
T ss_pred HHHHHHHHHHhccccCeEEEEEecCchHHHHHHH---------------------hhcCCCEEEeCcHHHHHHHHhccCc
Confidence 9999999999999999999999999876665443 4466899999999999999977889
Q ss_pred ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEe
Q 011620 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (481)
.+..++++|+||||++++..|...+..|+..++. ..+.+++|
T Consensus 201 ~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~--------------------------------------erqt~Lfs 242 (476)
T KOG0330|consen 201 SLEQLKFLVLDEADRLLDMDFEEELDYILKVIPR--------------------------------------ERQTFLFS 242 (476)
T ss_pred cHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCc--------------------------------------cceEEEEE
Confidence 9999999999999999999999999999998863 33899999
Q ss_pred EEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHh
Q 011620 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~ 353 (481)
||++.++..+....+..|..+..... +..-..+.+.+...+...|..+|..++....++++||||++...++.++-+|.
T Consensus 243 ATMt~kv~kL~rasl~~p~~v~~s~k-y~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~ 321 (476)
T KOG0330|consen 243 ATMTKKVRKLQRASLDNPVKVAVSSK-YQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLR 321 (476)
T ss_pred eecchhhHHHHhhccCCCeEEeccch-hcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHH
Confidence 99999999999888888887765554 34455667788888999999999999999999999999999999999999999
Q ss_pred hcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCC
Q 011620 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g 433 (481)
..+ +.+..+||.|++..|.-.++.|++|.++||+||++.++|+|+|.+++||+||.|.+..+|+||+||++|.|+.|
T Consensus 322 ~lg---~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG 398 (476)
T KOG0330|consen 322 NLG---FQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSG 398 (476)
T ss_pred hcC---cceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCc
Confidence 888 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCCcchhhhhhcccccchh
Q 011620 434 RCFTLLHKDEVCLVGCLTPLLLCTS 458 (481)
Q Consensus 434 ~~i~~~~~~~~~~~~~i~~~~~~~~ 458 (481)
.++.+++-.|.+.+.+|+..+.+.-
T Consensus 399 ~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 399 KAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred ceEEEEehhhhHHHHHHHHHHhcCC
Confidence 9999999999999999988776554
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-58 Score=433.49 Aligned_cols=372 Identities=31% Similarity=0.480 Sum_probs=334.9
Q ss_pred CCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhh-----ccCCcc
Q 011620 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLR 103 (481)
Q Consensus 29 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~-----~~~~~~ 103 (481)
++++ +++++....++..||..|+|.|..+|+.++. |+|++..+.||||||++|++|++.++... ...+|+
T Consensus 93 f~~~-~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~ 167 (519)
T KOG0331|consen 93 FQEL-GLSEELMKALKEQGFEKPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPI 167 (519)
T ss_pred hhcc-cccHHHHHHHHhcCCCCCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCe
Confidence 4444 3999999999999999999999999988887 99999999999999999999999998862 345789
Q ss_pred EEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH
Q 011620 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183 (481)
Q Consensus 104 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l 183 (481)
+||++||++|+.|+...+..++...++.+.+++|+.++..+... +.++.+|+|+||+++
T Consensus 168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~---------------------l~~gvdiviaTPGRl 226 (519)
T KOG0331|consen 168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRD---------------------LERGVDVVIATPGRL 226 (519)
T ss_pred EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHH---------------------HhcCCcEEEeCChHH
Confidence 99999999999999999999999999999999999998888655 456789999999999
Q ss_pred HHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCC
Q 011620 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263 (481)
Q Consensus 184 ~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (481)
.++++. +...++.+.++|+||||+|++.+|...++.|+..+....
T Consensus 227 ~d~le~-g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~---------------------------------- 271 (519)
T KOG0331|consen 227 IDLLEE-GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPD---------------------------------- 271 (519)
T ss_pred HHHHHc-CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCc----------------------------------
Confidence 999998 568899999999999999999999999999999884322
Q ss_pred CcceeeEEEeEEEecCcccccccccCCceeeecCCc-cccCCcccccceecccCCCcHHHHHHHHHhc---CCCcEEEEc
Q 011620 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSL---GEEKCIVFT 339 (481)
Q Consensus 264 ~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~lVf~ 339 (481)
.|++++|||++..+..++..++.++..+..+.. .......+.+....++...|...+..++... .++++||||
T Consensus 272 ---rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc 348 (519)
T KOG0331|consen 272 ---RQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFC 348 (519)
T ss_pred ---ccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEe
Confidence 279999999999999999999999988888765 5556677778888888888888888888766 467999999
Q ss_pred CCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhH
Q 011620 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (481)
Q Consensus 340 ~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~ 419 (481)
++...|+++...++..+ +.+..+||+.++.+|+.+++.|++|++.|||||+++++|+|+|++++||+||+|.+.++|
T Consensus 349 ~tkr~~~~l~~~l~~~~---~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdY 425 (519)
T KOG0331|consen 349 ETKRTCDELARNLRRKG---WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDY 425 (519)
T ss_pred cchhhHHHHHHHHHhcC---cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHH
Confidence 99999999999998766 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhhhhhhhhhh
Q 011620 420 IHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSDILQRKTRL 467 (481)
Q Consensus 420 ~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 467 (481)
+||+||+||.|+.|.+++|+...+......+.+.+....+.+...-..
T Consensus 426 VHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~ 473 (519)
T KOG0331|consen 426 VHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLE 473 (519)
T ss_pred HhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHH
Confidence 999999999999999999999999999999999998777766554433
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1e-55 Score=438.46 Aligned_cols=382 Identities=28% Similarity=0.434 Sum_probs=318.6
Q ss_pred CCcccCCCCCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHH
Q 011620 9 MPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 9 ~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~ 88 (481)
+.++.....|....+|+++. +++++++.|.++||..|+++|.++|+.++. ++++++.+|||||||++|++
T Consensus 117 i~~~~g~~~p~p~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylL 186 (545)
T PTZ00110 117 ITIIAGENVPKPVVSFEYTS------FPDYILKSLKNAGFTEPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLL 186 (545)
T ss_pred cEEecCCCCCcccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHH
Confidence 33344556677777888774 999999999999999999999999999987 99999999999999999999
Q ss_pred HHHHHHHhhc----cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchh
Q 011620 89 PIVQTLSNRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPED 164 (481)
Q Consensus 89 ~i~~~l~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (481)
|++..+.... ..++.+||++||++|+.|+.+.+..++...++.+..++|+.....+...
T Consensus 187 P~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~----------------- 249 (545)
T PTZ00110 187 PAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYA----------------- 249 (545)
T ss_pred HHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHH-----------------
Confidence 9988775431 2467899999999999999999999998888999999998876655332
Q ss_pred HHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCcccccccccccccccc
Q 011620 165 VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 244 (481)
Q Consensus 165 ~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 244 (481)
+..+++|+|+||++|.+++.. ....+..+++||+||||++.+.++...+..++....
T Consensus 250 ----l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~------------------ 306 (545)
T PTZ00110 250 ----LRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------------------ 306 (545)
T ss_pred ----HHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC------------------
Confidence 345679999999999999887 446788999999999999999999888888877653
Q ss_pred ccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccC-CceeeecCCccccCCcccccceecccCCCcHHHH
Q 011620 245 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323 (481)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 323 (481)
+..|++++|||++.....+....+. .+..+..+.........+.+.........|...+
T Consensus 307 --------------------~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L 366 (545)
T PTZ00110 307 --------------------PDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKL 366 (545)
T ss_pred --------------------CCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHH
Confidence 2238999999998777666655554 3554444333222233444444555556677777
Q ss_pred HHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCC
Q 011620 324 VALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401 (481)
Q Consensus 324 ~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi 401 (481)
..++... .+.++||||+++..++.+++.|...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 367 ~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g---~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi 443 (545)
T PTZ00110 367 KMLLQRIMRDGDKILIFVETKKGADFLTKELRLDG---WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDV 443 (545)
T ss_pred HHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcC---CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCc
Confidence 7777654 46799999999999999999998766 788999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhhhhhh
Q 011620 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSDILQR 463 (481)
Q Consensus 402 ~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~ 463 (481)
|++++||+|++|.+...|+||+||+||.|..|.+++|+++.+......+.+.+....+.+..
T Consensus 444 ~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~ 505 (545)
T PTZ00110 444 KDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPP 505 (545)
T ss_pred ccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCH
Confidence 99999999999999999999999999999999999999999999999999998887775543
No 4
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.6e-55 Score=427.54 Aligned_cols=357 Identities=27% Similarity=0.427 Sum_probs=301.4
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc------cCCccEEEEc
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVL 108 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~------~~~~~~lil~ 108 (481)
|++.+++++.++||..|+|+|.+|++.+++ |+|+++.||||||||++|++|+++.+.... ..++++||++
T Consensus 15 l~~~l~~~l~~~g~~~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~ 90 (423)
T PRK04837 15 LHPQVVEALEKKGFHNCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMA 90 (423)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEEC
Confidence 999999999999999999999999999887 999999999999999999999998886532 2356899999
Q ss_pred ccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhh
Q 011620 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (481)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~ 188 (481)
||++|+.|+++.+..+....++++..++|+......... +..+++|+|+||+++..++.
T Consensus 91 PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---------------------l~~~~~IlV~TP~~l~~~l~ 149 (423)
T PRK04837 91 PTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV---------------------LESGVDILIGTTGRLIDYAK 149 (423)
T ss_pred CcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---------------------hcCCCCEEEECHHHHHHHHH
Confidence 999999999999999998889999999998776554332 34567999999999999987
Q ss_pred cCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCccee
Q 011620 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (481)
Q Consensus 189 ~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (481)
. ..+.+++++++|+||||.+.+.++...+..++..++... ..+
T Consensus 150 ~-~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~------------------------------------~~~ 192 (423)
T PRK04837 150 Q-NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPAN------------------------------------QRL 192 (423)
T ss_pred c-CCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCcc------------------------------------cee
Confidence 6 457789999999999999999888888887777664321 225
Q ss_pred eEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHH
Q 011620 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 348 (481)
Q Consensus 269 ~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l 348 (481)
.+++|||++.....+....+..+..+....... ....+.+.........+...+..++......++||||+++..++.+
T Consensus 193 ~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l 271 (423)
T PRK04837 193 NMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK-TGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEI 271 (423)
T ss_pred EEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc-CCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHH
Confidence 789999998777777666677776655433321 2223333334444456777777877777778999999999999999
Q ss_pred HHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhc
Q 011620 349 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (481)
Q Consensus 349 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R 428 (481)
++.|.+.+ +.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.+...|+||+||+||
T Consensus 272 ~~~L~~~g---~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR 348 (423)
T PRK04837 272 WGHLAADG---HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGR 348 (423)
T ss_pred HHHHHhCC---CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccC
Confidence 99998776 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEeCCcchhhhhhcccccch
Q 011620 429 AGQLGRCFTLLHKDEVCLVGCLTPLLLCT 457 (481)
Q Consensus 429 ~~~~g~~i~~~~~~~~~~~~~i~~~~~~~ 457 (481)
.|+.|.+++|+.+.+...+..+.+.+...
T Consensus 349 ~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 349 AGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred CCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 99999999999999888888877655443
No 5
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.8e-54 Score=427.36 Aligned_cols=389 Identities=25% Similarity=0.439 Sum_probs=317.8
Q ss_pred CCCCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 15 ~~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
...|....+|+++ ++++.+++.|.+.||..|+|+|.+||+.++. |+++++.+|||||||++|++|++..+
T Consensus 114 ~~~p~pi~~f~~~------~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l 183 (518)
T PLN00206 114 EAVPPPILSFSSC------GLPPKLLLNLETAGYEFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRC 183 (518)
T ss_pred CCCCchhcCHHhC------CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHH
Confidence 3455566666666 4999999999999999999999999999886 99999999999999999999999877
Q ss_pred Hhh------ccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHh
Q 011620 95 SNR------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 168 (481)
Q Consensus 95 ~~~------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (481)
... ...+++++|++||++|+.|+.+.+..+....++.+..+.|+.....+...
T Consensus 184 ~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~--------------------- 242 (518)
T PLN00206 184 CTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYR--------------------- 242 (518)
T ss_pred HhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHH---------------------
Confidence 532 12567899999999999999999999988888888888888776555332
Q ss_pred hccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccch
Q 011620 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 248 (481)
Q Consensus 169 ~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (481)
+..+++|+|+||++|..++.+. .+.++++++||+||||.+.+.++...+..++....
T Consensus 243 l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~---------------------- 299 (518)
T PLN00206 243 IQQGVELIVGTPGRLIDLLSKH-DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS---------------------- 299 (518)
T ss_pred hcCCCCEEEECHHHHHHHHHcC-CccchheeEEEeecHHHHhhcchHHHHHHHHHhCC----------------------
Confidence 3456799999999999998874 56788999999999999999888887777766542
Q ss_pred hhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHH
Q 011620 249 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ 328 (481)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 328 (481)
..|++++|||++.....+......++..+....... ....+.+....+....+...+..++.
T Consensus 300 -----------------~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~-~~~~v~q~~~~~~~~~k~~~l~~~l~ 361 (518)
T PLN00206 300 -----------------QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNR-PNKAVKQLAIWVETKQKKQKLFDILK 361 (518)
T ss_pred -----------------CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCC-CCcceeEEEEeccchhHHHHHHHHHH
Confidence 227899999998888777777777777665544332 22334444555555566667777776
Q ss_pred hcC--CCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCE
Q 011620 329 SLG--EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 406 (481)
Q Consensus 329 ~~~--~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~ 406 (481)
... .+++||||+++..++.+++.|.... ++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 362 ~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~--g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~ 439 (518)
T PLN00206 362 SKQHFKPPAVVFVSSRLGADLLANAITVVT--GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQ 439 (518)
T ss_pred hhcccCCCEEEEcCCchhHHHHHHHHhhcc--CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCE
Confidence 443 3589999999999999999997532 278899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhhhhh----hhhhhhhhhhhhhhc
Q 011620 407 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSDILQ----RKTRLQKSKSRLRHK 477 (481)
Q Consensus 407 vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 477 (481)
||+|++|.+..+|+||+||+||.|..|.+++|++.++...+..+.+.++...+.+. ....+.+.+++..+.
T Consensus 440 VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~~~~~~~~~~~~~ 514 (518)
T PLN00206 440 VIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSRYLGSGRKRKKKR 514 (518)
T ss_pred EEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhChhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999988887665433 333455555444433
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-54 Score=423.42 Aligned_cols=356 Identities=31% Similarity=0.504 Sum_probs=320.0
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCcc-EEEEcccHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLR-ALVVLPTRDL 113 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~-~lil~P~~~L 113 (481)
+++.+++++.+.||..|+|.|..+++.++. |+|+++.++||||||.+|++|+++.+......... +||++||++|
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTREL 111 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTREL 111 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHH
Confidence 999999999999999999999999999998 89999999999999999999999997642122212 9999999999
Q ss_pred HHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCC
Q 011620 114 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~ 192 (481)
+.|+++.+..+.... ++.+..++|+.+...+... +..+++|+|+||.++++++... .
T Consensus 112 A~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---------------------l~~~~~ivVaTPGRllD~i~~~-~ 169 (513)
T COG0513 112 AVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---------------------LKRGVDIVVATPGRLLDLIKRG-K 169 (513)
T ss_pred HHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---------------------HhcCCCEEEECccHHHHHHHcC-C
Confidence 999999999999988 7999999999988887643 3345799999999999999984 6
Q ss_pred cccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEE
Q 011620 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (481)
Q Consensus 193 ~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (481)
+.++.+.++|+||||.|++.+|.+.+..|+..++. ..|++++
T Consensus 170 l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~--------------------------------------~~qtllf 211 (513)
T COG0513 170 LDLSGVETLVLDEADRMLDMGFIDDIEKILKALPP--------------------------------------DRQTLLF 211 (513)
T ss_pred cchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCc--------------------------------------ccEEEEE
Confidence 88999999999999999999999999999998864 2389999
Q ss_pred eEEEecCcccccccccCCceeeecCCcc-ccCCcccccceecccCCC-cHHHHHHHHHhcCCCcEEEEcCCchhHHHHHH
Q 011620 273 SATLTQDPNKLAQLDLHHPLFLTTGETR-YKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350 (481)
Q Consensus 273 Sat~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~ 350 (481)
|||++.....+...++.+|..+...... ......+.+++..+.... |...|..++......++||||++...++.++.
T Consensus 212 SAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~ 291 (513)
T COG0513 212 SATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAE 291 (513)
T ss_pred ecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHH
Confidence 9999998888999999999877666332 235677888888888765 99999999998888899999999999999999
Q ss_pred HHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCC
Q 011620 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (481)
Q Consensus 351 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~ 430 (481)
.|...+ +++..+||++++.+|.+.++.|++|+.+|||||+++.+|+|+|++++||+||.|.+...|+||+||+||.|
T Consensus 292 ~l~~~g---~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG 368 (513)
T COG0513 292 SLRKRG---FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAG 368 (513)
T ss_pred HHHHCC---CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCC
Confidence 999888 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCC-cchhhhhhcccccch
Q 011620 431 QLGRCFTLLHKD-EVCLVGCLTPLLLCT 457 (481)
Q Consensus 431 ~~g~~i~~~~~~-~~~~~~~i~~~~~~~ 457 (481)
..|.++.|+.+. +...+..+++.+...
T Consensus 369 ~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 369 RKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 999999999986 888888888886554
No 7
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.1e-54 Score=427.03 Aligned_cols=357 Identities=26% Similarity=0.411 Sum_probs=302.8
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc------cCCccEEEEc
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVL 108 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~------~~~~~~lil~ 108 (481)
|++.++++|.++||..|+|+|.++|+.+++ ++|+++.+|||||||++|++++++.+.... ..++++||++
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~ 91 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILA 91 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEe
Confidence 999999999999999999999999999887 999999999999999999999998876432 1246899999
Q ss_pred ccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhh
Q 011620 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (481)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~ 188 (481)
||++|+.|+++.+..+....++.+..++|+.....+... +..+++|+|+||++|.+++.
T Consensus 92 PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~---------------------l~~~~dIiV~TP~rL~~~l~ 150 (572)
T PRK04537 92 PTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL---------------------LQQGVDVIIATPGRLIDYVK 150 (572)
T ss_pred CcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---------------------HhCCCCEEEECHHHHHHHHH
Confidence 999999999999999998889999999999876655322 33567999999999999987
Q ss_pred cCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCccee
Q 011620 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (481)
Q Consensus 189 ~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (481)
....+.+..+++||+||||.+.+.++...+..++..+... ...+
T Consensus 151 ~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~------------------------------------~~~q 194 (572)
T PRK04537 151 QHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER------------------------------------GTRQ 194 (572)
T ss_pred hccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc------------------------------------cCce
Confidence 7555678889999999999999988888888877766431 1238
Q ss_pred eEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHH
Q 011620 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 348 (481)
Q Consensus 269 ~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l 348 (481)
++++|||+......+....+..+..+....... ....+.+.........+...+..++....+.++||||+++..++.+
T Consensus 195 ~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~-~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l 273 (572)
T PRK04537 195 TLLFSATLSHRVLELAYEHMNEPEKLVVETETI-TAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERV 273 (572)
T ss_pred EEEEeCCccHHHHHHHHHHhcCCcEEEeccccc-cccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHH
Confidence 899999998777777666666665443332221 2233444444555566777788888877788999999999999999
Q ss_pred HHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhc
Q 011620 349 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (481)
Q Consensus 349 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R 428 (481)
++.|.+.+ +.+..+|++++..+|..+++.|++|+.+|||||+++++|||+|++++||+|+.|.+...|+||+||+||
T Consensus 274 ~~~L~~~g---~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR 350 (572)
T PRK04537 274 ARTLERHG---YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTAR 350 (572)
T ss_pred HHHHHHcC---CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhccccc
Confidence 99998876 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEeCCcchhhhhhcccccc
Q 011620 429 AGQLGRCFTLLHKDEVCLVGCLTPLLLC 456 (481)
Q Consensus 429 ~~~~g~~i~~~~~~~~~~~~~i~~~~~~ 456 (481)
.|..|.+++|+++.+...+..+.+.+..
T Consensus 351 ~G~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 351 LGEEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred CCCCceEEEEecHHHHHHHHHHHHHHcC
Confidence 9999999999999888888888776554
No 8
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6.7e-54 Score=419.93 Aligned_cols=356 Identities=31% Similarity=0.480 Sum_probs=301.3
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc-----CCccEEEEc
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-----RCLRALVVL 108 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~-----~~~~~lil~ 108 (481)
+|++.+.++|.++||..|+++|.++++.+++ ++|+++.+|||||||++|++|+++.+..... ...++||++
T Consensus 7 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~ 82 (456)
T PRK10590 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILT 82 (456)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEe
Confidence 4999999999999999999999999999887 8999999999999999999999998865321 234799999
Q ss_pred ccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhh
Q 011620 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (481)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~ 188 (481)
||++|+.|+.+.+..+....++.+..+.|+.....+... +..+++|+|+||++|..++.
T Consensus 83 PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---------------------l~~~~~IiV~TP~rL~~~~~ 141 (456)
T PRK10590 83 PTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---------------------LRGGVDVLVATPGRLLDLEH 141 (456)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---------------------HcCCCcEEEEChHHHHHHHH
Confidence 999999999999999988888999999998876655332 33567999999999999887
Q ss_pred cCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCccee
Q 011620 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (481)
Q Consensus 189 ~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (481)
. ..+.++++++||+||||.+.+.++...+..++..+.. ..+
T Consensus 142 ~-~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~--------------------------------------~~q 182 (456)
T PRK10590 142 Q-NAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPA--------------------------------------KRQ 182 (456)
T ss_pred c-CCcccccceEEEeecHHHHhccccHHHHHHHHHhCCc--------------------------------------cCe
Confidence 6 4467889999999999999998887777777765532 237
Q ss_pred eEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHH
Q 011620 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 348 (481)
Q Consensus 269 ~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l 348 (481)
.+++|||++.....+....+.++..+...... .....+.+.........+...+..++......++||||+++..++.+
T Consensus 183 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l 261 (456)
T PRK10590 183 NLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHL 261 (456)
T ss_pred EEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHH
Confidence 89999999887777777677666655443322 22233444555555556666777777766678999999999999999
Q ss_pred HHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhc
Q 011620 349 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (481)
Q Consensus 349 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R 428 (481)
++.|.+.+ +.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+|++|.+..+|+||+||+||
T Consensus 262 ~~~L~~~g---~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR 338 (456)
T PRK10590 262 AEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGR 338 (456)
T ss_pred HHHHHHCC---CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhcccccc
Confidence 99998776 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEeCCcchhhhhhcccccch
Q 011620 429 AGQLGRCFTLLHKDEVCLVGCLTPLLLCT 457 (481)
Q Consensus 429 ~~~~g~~i~~~~~~~~~~~~~i~~~~~~~ 457 (481)
.|..|.+++|+...+...++.+++.+...
T Consensus 339 ~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 339 AAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred CCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999888888776544
No 9
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1e-53 Score=420.81 Aligned_cols=352 Identities=27% Similarity=0.411 Sum_probs=305.4
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
+++.+.++++++||.+|+|+|.+|++.+++ ++++++++|||||||++|++|+++.+... ..+++++|++||++|+
T Consensus 11 l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~-~~~~~~lil~PtreLa 85 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVK-RFRVQALVLCPTRELA 85 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhc-cCCceEEEEeCCHHHH
Confidence 999999999999999999999999999887 89999999999999999999999988643 2345799999999999
Q ss_pred HHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc
Q 011620 115 LQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 115 ~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
.|+.+.++.+.... ++.+..++|+.+...+... +..+++|+|+||+++..++.+ ..+
T Consensus 86 ~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~---------------------l~~~~~IvV~Tp~rl~~~l~~-~~~ 143 (460)
T PRK11776 86 DQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS---------------------LEHGAHIIVGTPGRILDHLRK-GTL 143 (460)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHH---------------------hcCCCCEEEEChHHHHHHHHc-CCc
Confidence 99999999887643 6889999998877665433 335679999999999999887 456
Q ss_pred ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEe
Q 011620 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (481)
.+.++++||+||||.+.+.++...+..++..++. ..+++++|
T Consensus 144 ~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~--------------------------------------~~q~ll~S 185 (460)
T PRK11776 144 DLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA--------------------------------------RRQTLLFS 185 (460)
T ss_pred cHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc--------------------------------------ccEEEEEE
Confidence 7889999999999999999988888888877642 23889999
Q ss_pred EEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHh
Q 011620 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~ 353 (481)
||+++....+....+..+..+...... ....+.+.+.......+...+..++....+.++||||+++..++.+++.|.
T Consensus 186 AT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~ 263 (460)
T PRK11776 186 ATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALN 263 (460)
T ss_pred ecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHH
Confidence 999888888887777777766554332 123355566666666688888888888788899999999999999999999
Q ss_pred hcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCC
Q 011620 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g 433 (481)
+.+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|..|
T Consensus 264 ~~~---~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G 340 (460)
T PRK11776 264 AQG---FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG 340 (460)
T ss_pred hCC---CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc
Confidence 876 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCCcchhhhhhcccccc
Q 011620 434 RCFTLLHKDEVCLVGCLTPLLLC 456 (481)
Q Consensus 434 ~~i~~~~~~~~~~~~~i~~~~~~ 456 (481)
.+++|+.+.+...+..+.+.+..
T Consensus 341 ~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 341 LALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred eEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999998888887776554
No 10
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-54 Score=391.63 Aligned_cols=359 Identities=35% Similarity=0.564 Sum_probs=320.4
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc--C
Q 011620 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--R 100 (481)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~--~ 100 (481)
+|.+++ |+-.+++++..+||..|+|.|..+|+-++- |++++.+|.||||||.+|++|+++++...+. .
T Consensus 182 sF~~mN------LSRPlLka~~~lGy~~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~ 251 (691)
T KOG0338|consen 182 SFQSMN------LSRPLLKACSTLGYKKPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVA 251 (691)
T ss_pred hHHhcc------cchHHHHHHHhcCCCCCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCc
Confidence 555565 999999999999999999999999997775 9999999999999999999999999877643 3
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~ 180 (481)
..|||||+||++|+.|++...++++.+.++.+++..||.....+-.. +...|+|+|+||
T Consensus 252 ~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~---------------------LRs~PDIVIATP 310 (691)
T KOG0338|consen 252 ATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAV---------------------LRSRPDIVIATP 310 (691)
T ss_pred ceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHH---------------------HhhCCCEEEecc
Confidence 45899999999999999999999999999999999999887766433 556789999999
Q ss_pred hhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCC
Q 011620 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
++|.+++.+...|+++++.++|+|||++|++.+|...+..|+++++..
T Consensus 311 GRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~-------------------------------- 358 (691)
T KOG0338|consen 311 GRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKN-------------------------------- 358 (691)
T ss_pred hhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhcccc--------------------------------
Confidence 999999999999999999999999999999999999999999998754
Q ss_pred CCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecc--cCCCcHHHHHHHHHhcCCCcEEEE
Q 011620 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC--ESKLKPLYLVALLQSLGEEKCIVF 338 (481)
Q Consensus 261 ~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~~l~~~~~~~~lVf 338 (481)
.|.+++|||++..+..++...+..|+.+.........+...+.|.... ....+...+..++...-..+++||
T Consensus 359 ------RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivF 432 (691)
T KOG0338|consen 359 ------RQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVF 432 (691)
T ss_pred ------ccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEE
Confidence 389999999999999999999999999887776654444444443222 244577778888888888899999
Q ss_pred cCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhh
Q 011620 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (481)
Q Consensus 339 ~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~ 418 (481)
+.+.+.|.++.-.|--.| +++.-+||.+++.+|.+.++.|++++++|||||+.+++|+||+++..||+|..|.+...
T Consensus 433 v~tKk~AHRl~IllGLlg---l~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~ 509 (691)
T KOG0338|consen 433 VRTKKQAHRLRILLGLLG---LKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEH 509 (691)
T ss_pred EehHHHHHHHHHHHHHhh---chhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHH
Confidence 999999999998886666 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhccc
Q 011620 419 YIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPL 453 (481)
Q Consensus 419 ~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~ 453 (481)
|+||+||+.|.|+.|.+++|+-.++.+.++.+.+.
T Consensus 510 Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 510 YLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred HHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 99999999999999999999999999988887766
No 11
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.7e-53 Score=415.11 Aligned_cols=360 Identities=30% Similarity=0.425 Sum_probs=302.9
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc------CCccEEEE
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV------RCLRALVV 107 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~------~~~~~lil 107 (481)
++++.+.++|.++||..|+++|.++++.+++ |+++++.+|||||||++|++++++.+..... .++++||+
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil 168 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALII 168 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEE
Confidence 4999999999999999999999999999887 9999999999999999999999998876432 14689999
Q ss_pred cccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhh
Q 011620 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (481)
Q Consensus 108 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l 187 (481)
+||++|+.|+++.+..+....++++..++|+.....+...+. ..+++|+|+||++|..++
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~--------------------~~~~~Iiv~TP~~Ll~~~ 228 (475)
T PRK01297 169 APTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE--------------------ARFCDILVATPGRLLDFN 228 (475)
T ss_pred eCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHh--------------------CCCCCEEEECHHHHHHHH
Confidence 999999999999999998888999999999877665543322 245799999999999887
Q ss_pred hcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcce
Q 011620 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (481)
Q Consensus 188 ~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (481)
.. ....++++++|||||+|.+.+.++...+..++...... ...
T Consensus 229 ~~-~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~------------------------------------~~~ 271 (475)
T PRK01297 229 QR-GEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK------------------------------------EER 271 (475)
T ss_pred Hc-CCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCC------------------------------------CCc
Confidence 76 34668899999999999998888877777777665422 122
Q ss_pred eeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHH
Q 011620 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (481)
Q Consensus 268 ~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (481)
+++++|||+..+...+...+...+..+........ ...+.+.........+...+..++......++||||+++..++.
T Consensus 272 q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~ 350 (475)
T PRK01297 272 QTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVA-SDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRR 350 (475)
T ss_pred eEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCC-CCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHH
Confidence 79999999988777777777777766544333211 22233344445556677778888877777899999999999999
Q ss_pred HHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhh
Q 011620 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (481)
Q Consensus 348 l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~ 427 (481)
+++.|...+ +.+..+||+++..+|.++++.|++|+.++||||+++++|||+|++++||+++.|.+...|+||+||+|
T Consensus 351 l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaG 427 (475)
T PRK01297 351 IEERLVKDG---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTG 427 (475)
T ss_pred HHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccC
Confidence 999998776 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEEeCCcchhhhhhcccccchh
Q 011620 428 RAGQLGRCFTLLHKDEVCLVGCLTPLLLCTS 458 (481)
Q Consensus 428 R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~ 458 (481)
|.|..|.+++|++.+|...+..+++.+....
T Consensus 428 R~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 428 RAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred CCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 9999999999999998888888877766553
No 12
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-53 Score=382.71 Aligned_cols=350 Identities=33% Similarity=0.520 Sum_probs=312.7
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccC--C--ccEEEEcc
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR--C--LRALVVLP 109 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~--~--~~~lil~P 109 (481)
.|.+++++++.++||...+|.|..+++.++. ++|+.|.++||||||++|++|+++.+...... + ...+|++|
T Consensus 12 ~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsP 87 (567)
T KOG0345|consen 12 PLSPWLLEALDESGFEKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISP 87 (567)
T ss_pred CccHHHHHHHHhcCCcccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecC
Confidence 3889999999999999999999999999887 99999999999999999999999998554322 1 25899999
Q ss_pred cHHHHHHHHHHHHHhccc-cCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhh
Q 011620 110 TRDLALQVKDVFAAIAPA-VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (481)
Q Consensus 110 ~~~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~ 188 (481)
|++|+.|+.+.+..|... .++++.++.||....+++..+. .++++|+|+||++|.+.+.
T Consensus 88 TRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fk--------------------ee~~nIlVgTPGRL~di~~ 147 (567)
T KOG0345|consen 88 TRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFK--------------------EEGPNILVGTPGRLLDILQ 147 (567)
T ss_pred cHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHH--------------------HhCCcEEEeCchhHHHHHh
Confidence 999999999999998876 5899999999988888876653 3678999999999999998
Q ss_pred c-CCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcce
Q 011620 189 A-TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (481)
Q Consensus 189 ~-~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (481)
+ ...+.+.++.++|+||||++++.+|...+..|++.++...
T Consensus 148 ~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQR-------------------------------------- 189 (567)
T KOG0345|consen 148 REAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQR-------------------------------------- 189 (567)
T ss_pred chhhhccccccceEEecchHhHhcccHHHHHHHHHHhccccc--------------------------------------
Confidence 7 3335577999999999999999999999999999997543
Q ss_pred eeEEEeEEEecCcccccccccCCceeeecCCccc-cCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHH
Q 011620 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY-KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346 (481)
Q Consensus 268 ~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~ 346 (481)
++-++|||.......+...++.+|+.+....... ..+.....++..+.+.+|...+.+++.....+++|||+++-..++
T Consensus 190 RTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVe 269 (567)
T KOG0345|consen 190 RTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVE 269 (567)
T ss_pred ccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHH
Confidence 6788999999999999999999999988776542 367778889999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhh
Q 011620 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (481)
Q Consensus 347 ~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~ 426 (481)
.+...+... .....+..+||.+....|..+++.|.+..-.+|+||+++.+|+|+|+++.||++|+|..+..|.||+||+
T Consensus 270 Yf~~~~~~~-l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRT 348 (567)
T KOG0345|consen 270 YFGKLFSRL-LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRT 348 (567)
T ss_pred HHHHHHHHH-hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchh
Confidence 999999876 2236788999999999999999999998788999999999999999999999999999999999999999
Q ss_pred hcCCCCCcEEEEEeCCcchh
Q 011620 427 ARAGQLGRCFTLLHKDEVCL 446 (481)
Q Consensus 427 ~R~~~~g~~i~~~~~~~~~~ 446 (481)
+|.|+.|.+++|+.+.+...
T Consensus 349 aR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 349 ARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred hhccCccceEEEecccHHHH
Confidence 99999999999999965443
No 13
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.5e-53 Score=413.90 Aligned_cols=354 Identities=30% Similarity=0.468 Sum_probs=296.5
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc---cCCccEEEEccc
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPT 110 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~~~lil~P~ 110 (481)
++++.+++.++++||..|+++|.++++.+++ ++++++.+|||+|||++|++|+++.+.... ..+++++|++||
T Consensus 7 ~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt 82 (434)
T PRK11192 7 ELDESLLEALQDKGYTRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPT 82 (434)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCc
Confidence 3999999999999999999999999999987 899999999999999999999998876432 234689999999
Q ss_pred HHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcC
Q 011620 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 190 (481)
Q Consensus 111 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~ 190 (481)
++|+.|+++.+..+....++++..++|+......... +.++++|+|+||++|..++..
T Consensus 83 ~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---------------------l~~~~~IlV~Tp~rl~~~~~~- 140 (434)
T PRK11192 83 RELAMQVADQARELAKHTHLDIATITGGVAYMNHAEV---------------------FSENQDIVVATPGRLLQYIKE- 140 (434)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHH---------------------hcCCCCEEEEChHHHHHHHHc-
Confidence 9999999999999998889999999998876655322 335679999999999999887
Q ss_pred CCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeE
Q 011620 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (481)
Q Consensus 191 ~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (481)
..+.+.++++||+||||.+.+.++...+..+...... ..+++
T Consensus 141 ~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~--------------------------------------~~q~~ 182 (434)
T PRK11192 141 ENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRW--------------------------------------RKQTL 182 (434)
T ss_pred CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCcc--------------------------------------ccEEE
Confidence 4567889999999999999998888887777655432 23789
Q ss_pred EEeEEEecC-cccccccccCCceeeecCCccccCCcccccceeccc-CCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHH
Q 011620 271 VLSATLTQD-PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 348 (481)
Q Consensus 271 ~~Sat~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l 348 (481)
++|||+... ...+....+..+..+...... .....+.++..... ...+...+..++......++||||+++..++.+
T Consensus 183 ~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l 261 (434)
T PRK11192 183 LFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHEL 261 (434)
T ss_pred EEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHH
Confidence 999999643 445555555566555443322 22233444444443 345677777777766778999999999999999
Q ss_pred HHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhc
Q 011620 349 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (481)
Q Consensus 349 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R 428 (481)
+..|.+.+ +.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+||
T Consensus 262 ~~~L~~~~---~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR 338 (434)
T PRK11192 262 AGWLRKAG---INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGR 338 (434)
T ss_pred HHHHHhCC---CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhccccccc
Confidence 99998866 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEeCCcchhhhhhccccc
Q 011620 429 AGQLGRCFTLLHKDEVCLVGCLTPLLL 455 (481)
Q Consensus 429 ~~~~g~~i~~~~~~~~~~~~~i~~~~~ 455 (481)
.|..|.+++++...+...+..+.+.+.
T Consensus 339 ~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 339 AGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred CCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 999999999999999988888876554
No 14
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-54 Score=361.70 Aligned_cols=369 Identities=24% Similarity=0.420 Sum_probs=328.1
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc
Q 011620 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~ 99 (481)
...+|+++ ||.+++++++...||..|...|++|+..++. |+++++.+..|+|||.+|...++..+.-+ .
T Consensus 25 v~~~F~~M------gl~edlLrgiY~yGfekPS~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~-~ 93 (400)
T KOG0328|consen 25 VIPTFDDM------GLKEDLLRGIYAYGFEKPSAIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDIS-V 93 (400)
T ss_pred cccchhhc------CchHHHHHHHHHhccCCchHHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecccc-c
Confidence 45667777 4999999999999999999999999999887 99999999999999999988887766554 3
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeC
Q 011620 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T 179 (481)
+...+++++||++|+.|+.+.+..++...++.+..+.|+.+..++++.+ ..+.+++.+|
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkl---------------------d~G~hvVsGt 152 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKL---------------------DYGQHVVSGT 152 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhh---------------------cccceEeeCC
Confidence 4457999999999999999999999999999999999999888776653 3556999999
Q ss_pred ChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccC
Q 011620 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
|+++.+.+++ +.+....+.++|+||++.+++.++...+-.++..++
T Consensus 153 PGrv~dmikr-~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp--------------------------------- 198 (400)
T KOG0328|consen 153 PGRVLDMIKR-RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLP--------------------------------- 198 (400)
T ss_pred CchHHHHHHh-ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCC---------------------------------
Confidence 9999999988 567788999999999999999999998888888876
Q ss_pred CCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCC-cHHHHHHHHHhcCCCcEEEE
Q 011620 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVF 338 (481)
Q Consensus 260 ~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lVf 338 (481)
+..|++++|||++....+....++.+|+.+........ .+.+++++...+.++ |...|.++.....-..++||
T Consensus 199 -----~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdelt-lEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIF 272 (400)
T KOG0328|consen 199 -----PGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELT-LEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIF 272 (400)
T ss_pred -----CCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCc-hhhhhhheeeechhhhhHhHHHHHhhhhehheEEEE
Confidence 34499999999999999999999999998877666533 455777887776555 88888888777767789999
Q ss_pred cCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhh
Q 011620 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (481)
Q Consensus 339 ~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~ 418 (481)
|+++..++.+.+.+.+.+ +.+...||+|+..+|+.+++.|++|+.+|||+|+...+|+|+|.+++||+||+|.+...
T Consensus 273 cnTk~kVdwLtekm~~~n---ftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~ 349 (400)
T KOG0328|consen 273 CNTKRKVDWLTEKMREAN---FTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNREL 349 (400)
T ss_pred ecccchhhHHHHHHHhhC---ceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHH
Confidence 999999999999998876 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhhhhhh
Q 011620 419 YIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSDILQR 463 (481)
Q Consensus 419 ~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~ 463 (481)
|+||+||+||.|+.|.++.|+...+.+.+..++..|...-+....
T Consensus 350 YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 350 YIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred HhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccc
Confidence 999999999999999999999999999999999998876655443
No 15
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.5e-53 Score=388.37 Aligned_cols=391 Identities=27% Similarity=0.403 Sum_probs=338.3
Q ss_pred CCCCCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHH
Q 011620 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (481)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~ 93 (481)
....|...-+|++.. ++.++++.+.+.||..|+|.|+.|++-.++ .+|+|-.+.||||||.+|++|++.+
T Consensus 237 g~~lpnplrnwEE~~------~P~e~l~~I~~~~y~eptpIqR~aipl~lQ----~rD~igvaETgsGktaaf~ipLl~~ 306 (673)
T KOG0333|consen 237 GGRLPNPLRNWEESG------FPLELLSVIKKPGYKEPTPIQRQAIPLGLQ----NRDPIGVAETGSGKTAAFLIPLLIW 306 (673)
T ss_pred CCCCCccccChhhcC------CCHHHHHHHHhcCCCCCchHHHhhccchhc----cCCeeeEEeccCCccccchhhHHHH
Confidence 345566666777764 999999999999999999999999887665 8999999999999999999999988
Q ss_pred HHhhc--------cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhH
Q 011620 94 LSNRA--------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165 (481)
Q Consensus 94 l~~~~--------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (481)
+.+.+ ..||..++++||++|++|+.++-.+|+...|+.+..+.|+.+..++.-.
T Consensus 307 IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fq------------------ 368 (673)
T KOG0333|consen 307 ISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQ------------------ 368 (673)
T ss_pred HHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhh------------------
Confidence 75543 4578999999999999999999999999999999999999888776322
Q ss_pred HHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCcccccccc---cccccc
Q 011620 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDA---STFLPS 242 (481)
Q Consensus 166 ~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~ 242 (481)
+..+++|+|+||.+|...+.+ ..+.++++.++|+|||+.+++.+|...+..++..++..+...-++. ...+..
T Consensus 369 ---ls~gceiviatPgrLid~Len-r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~ 444 (673)
T KOG0333|consen 369 ---LSMGCEIVIATPGRLIDSLEN-RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRK 444 (673)
T ss_pred ---hhccceeeecCchHHHHHHHH-HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHh
Confidence 447789999999999999987 5577889999999999999999999999999999987654432211 111222
Q ss_pred ccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHH
Q 011620 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322 (481)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 322 (481)
.+...+ ...|.+.+|||+++.+..++..++..|+++..+...... ..+++.......+.|...
T Consensus 445 ~~~~~k----------------~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~-~rveQ~v~m~~ed~k~kk 507 (673)
T KOG0333|consen 445 NFSSSK----------------KYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPT-PRVEQKVEMVSEDEKRKK 507 (673)
T ss_pred hccccc----------------ceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCc-cchheEEEEecchHHHHH
Confidence 222211 234899999999999999999999999999888776543 445566666777788999
Q ss_pred HHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCC
Q 011620 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 402 (481)
Q Consensus 323 l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~ 402 (481)
|.+++......++|||+|..+.|+.+++.|.+.+ +++..+||+-++.+|..+++.|++|..+|||||+++++|||+|
T Consensus 508 L~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g---~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIp 584 (673)
T KOG0333|consen 508 LIEILESNFDPPIIIFVNTKKGADALAKILEKAG---YKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIP 584 (673)
T ss_pred HHHHHHhCCCCCEEEEEechhhHHHHHHHHhhcc---ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCC
Confidence 9999999888999999999999999999999888 9999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccc
Q 011620 403 GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLC 456 (481)
Q Consensus 403 ~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~ 456 (481)
++++||+|+++.|+.+|+||+||+||+|+.|.+++|+.+.|...+..|...+..
T Consensus 585 nVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~e 638 (673)
T KOG0333|consen 585 NVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRE 638 (673)
T ss_pred ccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988888877763
No 16
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.8e-53 Score=385.95 Aligned_cols=389 Identities=30% Similarity=0.463 Sum_probs=337.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc---cCCc
Q 011620 26 DCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCL 102 (481)
Q Consensus 26 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~ 102 (481)
...+++.+ |++..+++++++||.++++.|..+++.++. |+|+++.|-||||||+++++|+++.+.+.. .++.
T Consensus 81 ~~~f~~~~-LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~ 155 (543)
T KOG0342|consen 81 TFRFEEGS-LSPLTLKAIKEMGFETMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGT 155 (543)
T ss_pred hhHhhccc-cCHHHHHHHHhcCccchhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCe
Confidence 34455554 999999999999999999999998776665 999999999999999999999999987753 3456
Q ss_pred cEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCCh
Q 011620 103 RALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (481)
Q Consensus 103 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~ 181 (481)
.++|+|||++|+.|++.+++.+...+ ++.+..+.|+....-+... +..+++|+|+||+
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~k---------------------l~k~~niliATPG 214 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADK---------------------LVKGCNILIATPG 214 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHH---------------------hhccccEEEeCCc
Confidence 79999999999999999999999888 8999999999876655443 4457899999999
Q ss_pred hHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCC
Q 011620 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (481)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (481)
+|.+++.+...+.+.+.+++|+||||++++.+|.+.++.|+..++..
T Consensus 215 RLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~--------------------------------- 261 (543)
T KOG0342|consen 215 RLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQ--------------------------------- 261 (543)
T ss_pred hHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhcccc---------------------------------
Confidence 99999999888888889999999999999999999999999988733
Q ss_pred CCCcceeeEEEeEEEecCcccccccccCC-ceeeecCC-ccccCCcccccceecccCCCcHHHHHHHHHhcCC-CcEEEE
Q 011620 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHH-PLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVF 338 (481)
Q Consensus 262 ~~~~~~~~i~~Sat~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~-~~~lVf 338 (481)
.|..++|||.++.+..+....+.. +..+.... ......+.+.+.+..++...+...+..++++... .+++||
T Consensus 262 -----rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF 336 (543)
T KOG0342|consen 262 -----RQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVF 336 (543)
T ss_pred -----ceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEE
Confidence 389999999999999988776665 66554433 3345566777778888888887888888887765 899999
Q ss_pred cCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhh
Q 011620 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (481)
Q Consensus 339 ~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~ 418 (481)
|++......+++.|.... +.|..+||+.++..|..+..+|++.+..||+||++..+|+|+|+++.||++++|..+.+
T Consensus 337 ~sT~~~vk~~~~lL~~~d---lpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~ 413 (543)
T KOG0342|consen 337 FSTCMSVKFHAELLNYID---LPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQ 413 (543)
T ss_pred echhhHHHHHHHHHhhcC---CchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHH
Confidence 999999999999998665 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhhhhh-hhhhhhhhhhhhhhcccCC
Q 011620 419 YIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSDILQ-RKTRLQKSKSRLRHKNYAL 481 (481)
Q Consensus 419 ~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 481 (481)
|+||+||++|.|..|.++.+..+.+...+..+.+.=....+..+ ....++.-.+.|+++||++
T Consensus 414 YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~lpl~~~e~~~~~~~~v~~~~~~li~~~y~~ 477 (543)
T KOG0342|consen 414 YIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKLPLEEFEFPPLKPEDVQSQLEKLISKNYSL 477 (543)
T ss_pred HHHHhccccccCCCceEEEEeChhHHHHHHHHhhCCCcccCCCCCCHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999866555555333 3346777788889999874
No 17
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.3e-52 Score=419.40 Aligned_cols=354 Identities=27% Similarity=0.433 Sum_probs=303.4
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
+|++.++++|.++||.+|+|+|.++++.++. ++++++.||||||||.+|.+|+++.+... ..++++||++||++|
T Consensus 12 ~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~-~~~~~~LIL~PTreL 86 (629)
T PRK11634 12 GLKAPILEALNDLGYEKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPE-LKAPQILVLAPTREL 86 (629)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhc-cCCCeEEEEeCcHHH
Confidence 4999999999999999999999999999887 89999999999999999999999887653 345689999999999
Q ss_pred HHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCC
Q 011620 114 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~ 192 (481)
+.|+++.+..+.... ++++..++|+.....+... +..+++|+|+||+++.+++.. ..
T Consensus 87 a~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~---------------------l~~~~~IVVgTPgrl~d~l~r-~~ 144 (629)
T PRK11634 87 AVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA---------------------LRQGPQIVVGTPGRLLDHLKR-GT 144 (629)
T ss_pred HHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHH---------------------hcCCCCEEEECHHHHHHHHHc-CC
Confidence 999999999887654 7899999998876655433 345679999999999999887 45
Q ss_pred cccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEE
Q 011620 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (481)
Q Consensus 193 ~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (481)
+.++++++||+||||.++..++...+..++..++. ..+++++
T Consensus 145 l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~--------------------------------------~~q~llf 186 (629)
T PRK11634 145 LDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE--------------------------------------GHQTALF 186 (629)
T ss_pred cchhhceEEEeccHHHHhhcccHHHHHHHHHhCCC--------------------------------------CCeEEEE
Confidence 77889999999999999999988888888776642 2378999
Q ss_pred eEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHH
Q 011620 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (481)
Q Consensus 273 Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l 352 (481)
|||++.....+...++.++..+........ ...+.+.+.......|...+..++......++||||+++..++.++..|
T Consensus 187 SAT~p~~i~~i~~~~l~~~~~i~i~~~~~~-~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L 265 (629)
T PRK11634 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTT-RPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEAL 265 (629)
T ss_pred EccCChhHHHHHHHHcCCCeEEEccCcccc-CCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHH
Confidence 999988888777777777766654433322 2233444455555667778888888777789999999999999999999
Q ss_pred hhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCC
Q 011620 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~ 432 (481)
.+.+ +.+..+|+++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|+.|.+...|+||+||+||.|+.
T Consensus 266 ~~~g---~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~ 342 (629)
T PRK11634 266 ERNG---YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 342 (629)
T ss_pred HhCC---CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCc
Confidence 9876 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCcchhhhhhcccccc
Q 011620 433 GRCFTLLHKDEVCLVGCLTPLLLC 456 (481)
Q Consensus 433 g~~i~~~~~~~~~~~~~i~~~~~~ 456 (481)
|.+++|+.+.+...++.+++.+..
T Consensus 343 G~ai~~v~~~e~~~l~~ie~~~~~ 366 (629)
T PRK11634 343 GRALLFVENRERRLLRNIERTMKL 366 (629)
T ss_pred ceEEEEechHHHHHHHHHHHHhCC
Confidence 999999999988888888766443
No 18
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-52 Score=379.34 Aligned_cols=422 Identities=43% Similarity=0.650 Sum_probs=348.1
Q ss_pred CCccc-CCCCCccccccccCCCCCCCCCCHHHH----------HHHHHcCCCCCchhhHHHHHhhhCCC-----CCCCCE
Q 011620 9 MPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLK----------VALQNMGISSLFPVQVAVWQETIGPG-----LFERDL 72 (481)
Q Consensus 9 ~~~~~-~~~~p~~~~~~~~~~~~~~~~l~~~~~----------~~l~~~~~~~~~~~Q~~a~~~~~~~~-----~~~~~~ 72 (481)
+--+| |...|.-..+-+--..+.+. +++.+. ..+.+++.....|.|..+++.++..+ ...+|+
T Consensus 108 q~~lp~wva~p~t~~~nslq~~s~l~-~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDI 186 (620)
T KOG0350|consen 108 QVELPGWVAIPETAQNNSLQIFSVLG-KSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDI 186 (620)
T ss_pred cccCcccccCceecCCCceeeeeccc-hhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCce
Confidence 33456 88888876654444334432 444333 34788999999999999999886543 346899
Q ss_pred EEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcC
Q 011620 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152 (481)
Q Consensus 73 iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 152 (481)
+|.||||||||++|.+||.+.+.+...+..|++|++|+++|+.|+++.|..++...|+.|+.+.|..+..++..++...+
T Consensus 187 cV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~ 266 (620)
T KOG0350|consen 187 CVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDP 266 (620)
T ss_pred EEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCC
Confidence 99999999999999999999998887778999999999999999999999999999999999999999998887765433
Q ss_pred ccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccc-
Q 011620 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN- 231 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~- 231 (481)
.- ...+|+|+||++|.+++...+.|++++++++||||||++++..|..|+..+..++......
T Consensus 267 ~~----------------~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~ 330 (620)
T KOG0350|consen 267 PE----------------CRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVA 330 (620)
T ss_pred Cc----------------cccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhc
Confidence 21 1349999999999999998888999999999999999999999999999998887654211
Q ss_pred ----cccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecC---CccccCC
Q 011620 232 ----RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG---ETRYKLP 304 (481)
Q Consensus 232 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 304 (481)
.+......-+..+... ...+ ...++....+++|||++.+...+....+..|...... ...+.++
T Consensus 331 ~~~nii~~~~~~~pt~~~e~--------~t~~-~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp 401 (620)
T KOG0350|consen 331 CLDNIIRQRQAPQPTVLSEL--------LTKL-GKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLP 401 (620)
T ss_pred ChhhhhhhcccCCchhhHHH--------Hhhc-CCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecC
Confidence 1111111111111111 1111 3445666789999999999999999888888655444 3556788
Q ss_pred cccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHh-hcCCcceEEEEccCccChHHHHHHHHHHhc
Q 011620 305 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (481)
Q Consensus 305 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 383 (481)
..+.+....+....+...+...+......++|+|++|...+.+++..|+ .++....++..+.|.++.+.|...++.|..
T Consensus 402 ~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~ 481 (620)
T KOG0350|consen 402 SSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK 481 (620)
T ss_pred hhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhc
Confidence 8888998888888999999999999999999999999999999999998 777777888899999999999999999999
Q ss_pred CCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccc
Q 011620 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLC 456 (481)
Q Consensus 384 g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~ 456 (481)
|++++|||++++.+|+|+.++++||+|++|.+...|+||+||++|+|+.|.++.+.+..+...+.++.+....
T Consensus 482 g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 482 GDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred CCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999888877665544
No 19
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-52 Score=362.92 Aligned_cols=357 Identities=30% Similarity=0.455 Sum_probs=315.9
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
|+++|+.+.++++|...|+|.|..+++++++ |+|++=+|-||||||.++.+|+++.+... ..+-.++|++||++|
T Consensus 13 Gl~~Wlve~l~~l~i~~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsed-P~giFalvlTPTrEL 87 (442)
T KOG0340|consen 13 GLSPWLVEQLKALGIKKPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSED-PYGIFALVLTPTREL 87 (442)
T ss_pred CccHHHHHHHHHhcCCCCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccC-CCcceEEEecchHHH
Confidence 7999999999999999999999999999998 99999999999999999999999999876 455679999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCC-
Q 011620 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG- 192 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~- 192 (481)
+-|+.++|..+.+..++++.+++|+....-+... +..+++++|+||+++..++.....
T Consensus 88 A~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~---------------------L~~rPHvVvatPGRlad~l~sn~~~ 146 (442)
T KOG0340|consen 88 ALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAI---------------------LSDRPHVVVATPGRLADHLSSNLGV 146 (442)
T ss_pred HHHHHHHHHHhcccccceEEEEEccHHHhhhhhh---------------------cccCCCeEecCccccccccccCCcc
Confidence 9999999999999999999999999776554322 456789999999999999987633
Q ss_pred --cccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeE
Q 011620 193 --FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (481)
Q Consensus 193 --~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (481)
+.+..+.++|+|||+.+.+..|...++.+.+..+.. .|.+
T Consensus 147 ~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~--------------------------------------RQtL 188 (442)
T KOG0340|consen 147 CSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKP--------------------------------------RQTL 188 (442)
T ss_pred chhhhhceeeEEecchhhhhccchhhHHhhhhccCCCc--------------------------------------cceE
Confidence 347889999999999999999999999888877643 3889
Q ss_pred EEeEEEecCcccccccccCCce-eeecCCccccCCcccccceecccCCCcHHHHHHHHHhcC---CCcEEEEcCCchhHH
Q 011620 271 VLSATLTQDPNKLAQLDLHHPL-FLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG---EEKCIVFTSSVESTH 346 (481)
Q Consensus 271 ~~Sat~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~~lVf~~s~~~~~ 346 (481)
++|||+++....+.......+. ............+...+.++.++...+..++...++... .+.++||+++..+++
T Consensus 189 lfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ 268 (442)
T KOG0340|consen 189 LFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQ 268 (442)
T ss_pred EEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHH
Confidence 9999999888887766665532 222333445667777788888999999999999998664 468999999999999
Q ss_pred HHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhh
Q 011620 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (481)
Q Consensus 347 ~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~ 426 (481)
.+..+|+... +.+..+|+.|++.+|...+.+|+++..++||||+.+++|+|||.++.||+++.|..+.+|+||.||+
T Consensus 269 ~l~~~l~~le---~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRt 345 (442)
T KOG0340|consen 269 LLSMTLKNLE---VRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRT 345 (442)
T ss_pred HHHHHHhhhc---eeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcch
Confidence 9999999877 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcEEEEEeCCcchhhhhhcccccch
Q 011620 427 ARAGQLGRCFTLLHKDEVCLVGCLTPLLLCT 457 (481)
Q Consensus 427 ~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~ 457 (481)
.|.|+.|.++.|+...|++.+..|++...++
T Consensus 346 ARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 346 ARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred hcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 9999999999999999999999888766544
No 20
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.5e-50 Score=393.71 Aligned_cols=353 Identities=24% Similarity=0.402 Sum_probs=287.2
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
++++.+.+++.++||..|+|+|.+|++.+++ ++++++.+|||+|||++|+++++..+... ..+.++||++|+++|
T Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~-~~~~~~lil~Pt~~L 108 (401)
T PTZ00424 34 KLNEDLLRGIYSYGFEKPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYD-LNACQALILAPTREL 108 (401)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCC-CCCceEEEECCCHHH
Confidence 4999999999999999999999999999887 89999999999999999999999877543 345689999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc
Q 011620 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
+.|+.+.+..++...++.+....|+....+... .+..+++|+|+||+++...+.. ..+
T Consensus 109 ~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~Tp~~l~~~l~~-~~~ 166 (401)
T PTZ00424 109 AQQIQKVVLALGDYLKVRCHACVGGTVVRDDIN---------------------KLKAGVHMVVGTPGRVYDMIDK-RHL 166 (401)
T ss_pred HHHHHHHHHHHhhhcCceEEEEECCcCHHHHHH---------------------HHcCCCCEEEECcHHHHHHHHh-CCc
Confidence 999999999998777888888888776554432 2335579999999999998876 346
Q ss_pred ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEe
Q 011620 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (481)
.++++++||+||+|++.+.++...+..++.... +..+++++|
T Consensus 167 ~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~~S 208 (401)
T PTZ00424 167 RVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP--------------------------------------PDVQVALFS 208 (401)
T ss_pred ccccccEEEEecHHHHHhcchHHHHHHHHhhCC--------------------------------------CCcEEEEEE
Confidence 688999999999999988777766655554432 234899999
Q ss_pred EEEecCcccccccccCCceeeecCCccccCCcccccceecccC-CCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHH
Q 011620 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l 352 (481)
||++.........++..+..+........ ...+..+...... ..+...+..++......++||||+++..++.+++.|
T Consensus 209 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l 287 (401)
T PTZ00424 209 ATMPNEILELTTKFMRDPKRILVKKDELT-LEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKM 287 (401)
T ss_pred ecCCHHHHHHHHHHcCCCEEEEeCCCCcc-cCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHH
Confidence 99987665555555555544433222211 2223333333332 234455666666666779999999999999999999
Q ss_pred hhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCC
Q 011620 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~ 432 (481)
.+.+ +.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.
T Consensus 288 ~~~~---~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~ 364 (401)
T PTZ00424 288 HERD---FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK 364 (401)
T ss_pred HHCC---CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC
Confidence 8775 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCcchhhhhhccccc
Q 011620 433 GRCFTLLHKDEVCLVGCLTPLLL 455 (481)
Q Consensus 433 g~~i~~~~~~~~~~~~~i~~~~~ 455 (481)
|.|++++.+.+.+.+..+++.+.
T Consensus 365 G~~i~l~~~~~~~~~~~~e~~~~ 387 (401)
T PTZ00424 365 GVAINFVTPDDIEQLKEIERHYN 387 (401)
T ss_pred ceEEEEEcHHHHHHHHHHHHHHC
Confidence 99999999999888888766554
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-51 Score=378.55 Aligned_cols=381 Identities=27% Similarity=0.413 Sum_probs=323.8
Q ss_pred CCCCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 15 ~~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
...|.+...+++.. +++.+...++..++..|+|+|+.+++.+.+ |++++++|+||+|||.+|++|++.++
T Consensus 67 ~~~p~~i~~f~~~~------l~~~l~~ni~~~~~~~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~ 136 (482)
T KOG0335|consen 67 RDVPPHIPTFDEAI------LGEALAGNIKRSGYTKPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYL 136 (482)
T ss_pred CccCCCcccccccc------hhHHHhhccccccccCCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHH
Confidence 34444444555443 888888888999999999999999887776 99999999999999999999999998
Q ss_pred Hhhcc---------CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhH
Q 011620 95 SNRAV---------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDV 165 (481)
Q Consensus 95 ~~~~~---------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (481)
..... ..|+++|++||++|+.|++++.+++....++.+...+|+.....+..
T Consensus 137 ~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~------------------- 197 (482)
T KOG0335|consen 137 LDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLR------------------- 197 (482)
T ss_pred HhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhh-------------------
Confidence 77632 24789999999999999999999999888999999999976655543
Q ss_pred HHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhh-HhHHhHHHHHHHhcccCcccccccccccccccc
Q 011620 166 LQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAF 244 (481)
Q Consensus 166 ~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 244 (481)
.+..+++|+|+||++|.+++.. +.+.+.+++++|+|||+.|++ .+|...++.|+........
T Consensus 198 --~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~-------------- 260 (482)
T KOG0335|consen 198 --FIKRGCDILVATPGRLKDLIER-GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPK-------------- 260 (482)
T ss_pred --hhccCccEEEecCchhhhhhhc-ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCc--------------
Confidence 3557899999999999999987 568899999999999999999 9999999999887754322
Q ss_pred ccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHH
Q 011620 245 GSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLV 324 (481)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 324 (481)
...|.+++|||.+.....+...++.+.++.......-...+.+.+-...+....|...|+
T Consensus 261 --------------------~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Ll 320 (482)
T KOG0335|consen 261 --------------------NNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLL 320 (482)
T ss_pred --------------------cceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHH
Confidence 334899999999988888877777763333222222234455566666777788888888
Q ss_pred HHHHhcC----CC-----cEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccc
Q 011620 325 ALLQSLG----EE-----KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (481)
Q Consensus 325 ~~l~~~~----~~-----~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l 395 (481)
+++.... .+ +++|||.+++.+..+...|...+ +.+.-+|+..++.+|.+.++.|++|.+.+||||+++
T Consensus 321 dll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~---~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~Va 397 (482)
T KOG0335|consen 321 DLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG---YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVA 397 (482)
T ss_pred HHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC---CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhh
Confidence 8887443 23 79999999999999999999877 889999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhhhhhhh
Q 011620 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSDILQRK 464 (481)
Q Consensus 396 ~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 464 (481)
.+|+|+|+++|||+||.|....+|+||+||+||.|+.|.++.|++..+....+.|.+.+...++.+..-
T Consensus 398 aRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~w 466 (482)
T KOG0335|consen 398 ARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQW 466 (482)
T ss_pred hcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHH
Confidence 999999999999999999999999999999999999999999999999999999999999888755443
No 22
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-51 Score=372.15 Aligned_cols=359 Identities=29% Similarity=0.442 Sum_probs=325.4
Q ss_pred CCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhh---ccCCccEE
Q 011620 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR---AVRCLRAL 105 (481)
Q Consensus 29 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~---~~~~~~~l 105 (481)
+.+|| ++...+++|++.+|..++..|+.+|+..+. |++++=.+-||||||++++.|+++.+.+. +..|.-+|
T Consensus 71 F~dlp-ls~~t~kgLke~~fv~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGal 145 (758)
T KOG0343|consen 71 FADLP-LSQKTLKGLKEAKFVKMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGAL 145 (758)
T ss_pred HHhCC-CchHHHHhHhhcCCccHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeE
Confidence 44455 999999999999999999999999998887 99999999999999999999999988764 35677899
Q ss_pred EEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHH
Q 011620 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 185 (481)
Q Consensus 106 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~ 185 (481)
|++||++|+-|+.+.+.+.+..++++++++.||.....+...+ .+.+|+||||++|+.
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi----------------------~~mNILVCTPGRLLQ 203 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI----------------------SQMNILVCTPGRLLQ 203 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh----------------------hcCCeEEechHHHHH
Confidence 9999999999999999999999999999999998866654332 456999999999999
Q ss_pred hhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCc
Q 011620 186 HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (481)
Q Consensus 186 ~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (481)
++.....+.-+++.++|+|||+++++++|...+..|+..++.
T Consensus 204 Hmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~-------------------------------------- 245 (758)
T KOG0343|consen 204 HMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPK-------------------------------------- 245 (758)
T ss_pred HhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCCh--------------------------------------
Confidence 999988899999999999999999999999999999998864
Q ss_pred ceeeEEEeEEEecCcccccccccCCceeeecCC-ccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchh
Q 011620 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES 344 (481)
Q Consensus 266 ~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~ 344 (481)
..|++++|||.+..+..+++..+.+|.++..-. .....|..+.++++.++...|+..|...++.+...+.|||++|.++
T Consensus 246 ~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKq 325 (758)
T KOG0343|consen 246 KRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQ 325 (758)
T ss_pred hheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhH
Confidence 448999999999999999999999999887764 3367889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHh
Q 011620 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424 (481)
Q Consensus 345 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~G 424 (481)
+..++..+.+. .++..+..+||.|++..|.++.+.|...+..||+||+++++|+|+|.+++||.+|+|.+..+|+||+|
T Consensus 326 vkf~~e~F~rl-rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvG 404 (758)
T KOG0343|consen 326 VKFLYEAFCRL-RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVG 404 (758)
T ss_pred HHHHHHHHHhc-CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhh
Confidence 99999999887 34578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCcEEEEEeCCc-chhhhhhccc
Q 011620 425 RTARAGQLGRCFTLLHKDE-VCLVGCLTPL 453 (481)
Q Consensus 425 R~~R~~~~g~~i~~~~~~~-~~~~~~i~~~ 453 (481)
|+.|.+..|.+.++..+++ ..++..|.+.
T Consensus 405 RtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 405 RTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred hhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 9999999999999999999 4444544443
No 23
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-52 Score=357.91 Aligned_cols=367 Identities=26% Similarity=0.442 Sum_probs=331.4
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc
Q 011620 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~ 99 (481)
++-......++++ +|..+++..+.+.||..|+|.|.++++.++. |+++++.|-.|+|||-+|+.|.++.+... .
T Consensus 78 DVt~TkG~efEd~-~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLt----GrdiLaRaKNGTGKT~a~~IP~Lekid~~-~ 151 (459)
T KOG0326|consen 78 DVTATKGNEFEDY-CLKRELLMGIFEKGFEKPSPIQEESIPIALT----GRDILARAKNGTGKTAAYCIPVLEKIDPK-K 151 (459)
T ss_pred ccccccCccHHHh-hhhHHHHHHHHHhccCCCCCccccccceeec----chhhhhhccCCCCCccceechhhhhcCcc-c
Confidence 4444455556666 4999999999999999999999999998886 99999999999999999999999988664 3
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeC
Q 011620 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T 179 (481)
..-..++++||++|+-|....+..+.+..++.+...+|+....+++-. +....+++|+|
T Consensus 152 ~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~R---------------------l~~~VH~~vgT 210 (459)
T KOG0326|consen 152 NVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMR---------------------LNQTVHLVVGT 210 (459)
T ss_pred cceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceee---------------------ecCceEEEEcC
Confidence 344799999999999999999999999999999999999988877543 33557899999
Q ss_pred ChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccC
Q 011620 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
|++.+++..+ +.-.++++.++|+|||+.+++..|...++.++..++..
T Consensus 211 PGRIlDL~~K-gVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~------------------------------- 258 (459)
T KOG0326|consen 211 PGRILDLAKK-GVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKE------------------------------- 258 (459)
T ss_pred ChhHHHHHhc-ccccchhceEEEechhhhhhchhhhhHHHHHHHhCCcc-------------------------------
Confidence 9999999987 44678999999999999999999999999999988743
Q ss_pred CCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEc
Q 011620 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (481)
Q Consensus 260 ~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~ 339 (481)
.|++++|||.+-.+..+...++.+|+.++.+.+. ....+.+|+..+.+..|...|..++....-+..+|||
T Consensus 259 -------rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL--tl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFC 329 (459)
T KOG0326|consen 259 -------RQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL--TLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFC 329 (459)
T ss_pred -------ceeeEEecccchhHHHHHHHhccCcceeehhhhh--hhcchhhheeeechhhhhhhHHHHHHHhcccceEEEe
Confidence 3899999999999999999999999999887763 4567788999999999999999999888888999999
Q ss_pred CCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhH
Q 011620 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (481)
Q Consensus 340 ~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~ 419 (481)
+|...++.+++.+.+.| +.+.++|+.|.+..|..+...|++|.|+.||||+.+.+|||++.+++||+||+|.+..+|
T Consensus 330 NS~~rVELLAkKITelG---yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtY 406 (459)
T KOG0326|consen 330 NSTNRVELLAKKITELG---YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETY 406 (459)
T ss_pred ccchHhHHHHHHHHhcc---chhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHH
Confidence 99999999999999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccch
Q 011620 420 IHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCT 457 (481)
Q Consensus 420 ~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~ 457 (481)
.+|+||+||.|..|.++.++..+|...+..++..+.+.
T Consensus 407 LHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtE 444 (459)
T KOG0326|consen 407 LHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTE 444 (459)
T ss_pred HHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccc
Confidence 99999999999999999999999999998888777654
No 24
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-51 Score=359.94 Aligned_cols=374 Identities=28% Similarity=0.440 Sum_probs=323.8
Q ss_pred CCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHh
Q 011620 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (481)
Q Consensus 17 ~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~ 96 (481)
.|...++|++.. ...+++.+.+.+.||..|+|.|..||+-+++ |.+++..+.||+|||+++++|.+-++..
T Consensus 214 IPnP~ctFddAF-----q~~pevmenIkK~GFqKPtPIqSQaWPI~LQ----G~DliGVAQTgtgKtL~~L~pg~ihi~a 284 (629)
T KOG0336|consen 214 IPNPVCTFDDAF-----QCYPEVMENIKKTGFQKPTPIQSQAWPILLQ----GIDLIGVAQTGTGKTLAFLLPGFIHIDA 284 (629)
T ss_pred CCCCcCcHHHHH-----hhhHHHHHHHHhccCCCCCcchhcccceeec----CcceEEEEecCCCcCHHHhccceeeeec
Confidence 556666666654 6899999999999999999999999998887 9999999999999999999997655433
Q ss_pred h-----ccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhcc
Q 011620 97 R-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (481)
Q Consensus 97 ~-----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (481)
. ...++++|+++||++|+.|+.-+..++.-. |+...+++|+....+++.. +.+
T Consensus 285 qp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyn-g~ksvc~ygggnR~eqie~---------------------lkr 342 (629)
T KOG0336|consen 285 QPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYN-GLKSVCVYGGGNRNEQIED---------------------LKR 342 (629)
T ss_pred cchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhc-CcceEEEecCCCchhHHHH---------------------Hhc
Confidence 2 346788999999999999998888877654 7888888888877776654 456
Q ss_pred CCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhh
Q 011620 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (481)
Q Consensus 172 ~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
+.+|+++||.+|.++... ..+++..+-++|+|||+.|++.+|...+..|+--.+
T Consensus 343 gveiiiatPgrlndL~~~-n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR------------------------- 396 (629)
T KOG0336|consen 343 GVEIIIATPGRLNDLQMD-NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIR------------------------- 396 (629)
T ss_pred CceEEeeCCchHhhhhhc-CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC-------------------------
Confidence 789999999999998876 567899999999999999999999988888775553
Q ss_pred hccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhc-
Q 011620 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL- 330 (481)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~- 330 (481)
|..++++.|||+++.+..++..++++|.++..+..+......+.+..+...+.++...+..++...
T Consensus 397 -------------PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms 463 (629)
T KOG0336|consen 397 -------------PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMS 463 (629)
T ss_pred -------------CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcC
Confidence 445899999999999999999999999999888776666666677776666777777766666644
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEe
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~ 410 (481)
...++||||.+...|+.+...|.--+ +....+||+-.+.+|+..++.|+.|+.+|||+|+.+++|+|+|+++||++|
T Consensus 464 ~ndKvIiFv~~K~~AD~LSSd~~l~g---i~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~Ny 540 (629)
T KOG0336|consen 464 SNDKVIIFVSRKVMADHLSSDFCLKG---ISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNY 540 (629)
T ss_pred CCceEEEEEechhhhhhccchhhhcc---cchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeecc
Confidence 56799999999999999988776444 788899999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhhhhhh
Q 011620 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSDILQR 463 (481)
Q Consensus 411 ~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~ 463 (481)
|+|.++..|.||+||+||.|+.|.++.|+..+|-....+|+..+...++.+..
T Consensus 541 DFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPd 593 (629)
T KOG0336|consen 541 DFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPD 593 (629)
T ss_pred CCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcH
Confidence 99999999999999999999999999999999999999999999988876543
No 25
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-49 Score=360.30 Aligned_cols=378 Identities=33% Similarity=0.505 Sum_probs=309.1
Q ss_pred cccccCCCCCCCCCCHHHHHHHHH-cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc--
Q 011620 22 SLFEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-- 98 (481)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~-- 98 (481)
..|....+..+ ||++.+...|+. +++..|+..|..+|+.+++ |+|++|.++||||||++|++|+.+.+....
T Consensus 131 ~~fts~~f~~L-GL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~k 205 (708)
T KOG0348|consen 131 APFTSAAFASL-GLHPHLVSHLNTKMKISAPTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPK 205 (708)
T ss_pred cccccccchhc-CCCHHHHHHHHHHhccCccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCcc
Confidence 33444445555 699999999977 8999999999999999987 999999999999999999999999986643
Q ss_pred ---cCCccEEEEcccHHHHHHHHHHHHHhccccCce-EEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCc
Q 011620 99 ---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174 (481)
Q Consensus 99 ---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (481)
..|+.+||++||++|+.|+++.++++...+.+- -+.+.||.....+. ..+.++.+
T Consensus 206 i~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEK---------------------ARLRKGiN 264 (708)
T KOG0348|consen 206 IQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEK---------------------ARLRKGIN 264 (708)
T ss_pred ccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHH---------------------HHHhcCce
Confidence 357889999999999999999999998765433 35555554433332 23668899
Q ss_pred EEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhcc
Q 011620 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCG 254 (481)
Q Consensus 175 I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (481)
|+|+||++|.+++.+...+.++.++.||+||+|++++.+|...+..|+..........
T Consensus 265 ILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e---------------------- 322 (708)
T KOG0348|consen 265 ILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAE---------------------- 322 (708)
T ss_pred EEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchh----------------------
Confidence 9999999999999998889999999999999999999999999999998874321100
Q ss_pred ccccCCCCCC-cceeeEEEeEEEecCcccccccccCCceeeecCC------------------------ccccCCccccc
Q 011620 255 VERGFKDKPY-PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE------------------------TRYKLPERLES 309 (481)
Q Consensus 255 ~~~~~~~~~~-~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~ 309 (481)
+.+... ++.+.+++|||+++.+..+....+++|+.+.... .....|+...+
T Consensus 323 ----~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~q 398 (708)
T KOG0348|consen 323 ----CKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQ 398 (708)
T ss_pred ----cccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhh
Confidence 001011 2457899999999999999999999998886111 11234555556
Q ss_pred ceecccCCCcHHHHHHHHHhc----CCCcEEEEcCCchhHHHHHHHHhhcCC-------------------cceEEEEcc
Q 011620 310 YKLICESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGE-------------------LRIKIKEYS 366 (481)
Q Consensus 310 ~~~~~~~~~k~~~l~~~l~~~----~~~~~lVf~~s~~~~~~l~~~l~~~~~-------------------~~~~~~~~~ 366 (481)
.+..++...+...|..++.+. ...++|||+++.+.++.-++++.+... .+.++..+|
T Consensus 399 ry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLH 478 (708)
T KOG0348|consen 399 RYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLH 478 (708)
T ss_pred ceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEec
Confidence 667777777777777776543 456899999999999999888865311 245789999
Q ss_pred CccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchh
Q 011620 367 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCL 446 (481)
Q Consensus 367 ~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~ 446 (481)
|+|.+.+|..+++.|+..+-.||+||+++.+|+|+|.+++||.|++|.+.++|+||+||+.|.|.+|.++.|..|.+.+.
T Consensus 479 Gsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey 558 (708)
T KOG0348|consen 479 GSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEY 558 (708)
T ss_pred CchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhc
Q 011620 447 VGCLT 451 (481)
Q Consensus 447 ~~~i~ 451 (481)
+..+.
T Consensus 559 ~~~l~ 563 (708)
T KOG0348|consen 559 VNYLK 563 (708)
T ss_pred HHHHH
Confidence 66544
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-50 Score=356.10 Aligned_cols=359 Identities=30% Similarity=0.439 Sum_probs=312.2
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc-----cCCccEEEEc
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVL 108 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~-----~~~~~~lil~ 108 (481)
||++.+++++.+.||..|+-.|..||+.+++ |+|++..|.||||||.+|++|+++.+...+ ..++..+|++
T Consensus 25 gLD~RllkAi~~lG~ekpTlIQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLv 100 (569)
T KOG0346|consen 25 GLDSRLLKAITKLGWEKPTLIQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILV 100 (569)
T ss_pred CCCHHHHHHHHHhCcCCcchhhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEe
Confidence 5999999999999999999999999999887 999999999999999999999999886643 3578899999
Q ss_pred ccHHHHHHHHHHHHHhccccC--ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHh
Q 011620 109 PTRDLALQVKDVFAAIAPAVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (481)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~ 186 (481)
||++|++|.+..+.++...++ +.+.-+.++.+.... ...+...|+|+|+||..+..+
T Consensus 101 PTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~---------------------~~~L~d~pdIvV~TP~~ll~~ 159 (569)
T KOG0346|consen 101 PTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVN---------------------SVALMDLPDIVVATPAKLLRH 159 (569)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHH---------------------HHHHccCCCeEEeChHHHHHH
Confidence 999999999999988866654 333222222221111 123556789999999999999
Q ss_pred hhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcc
Q 011620 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (481)
Q Consensus 187 l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (481)
+..+....+..++++|+||||.+.+-+|.+.+..+...++. .
T Consensus 160 ~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr--------------------------------------~ 201 (569)
T KOG0346|consen 160 LAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPR--------------------------------------I 201 (569)
T ss_pred HhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCc--------------------------------------h
Confidence 98855466888999999999999999999999999988863 3
Q ss_pred eeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHH-hcCCCcEEEEcCCchhH
Q 011620 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SLGEEKCIVFTSSVEST 345 (481)
Q Consensus 267 ~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~~lVf~~s~~~~ 345 (481)
+|.++||||+++++..+....+.+|++..........+..+.++.+.|.+..|...+..+++ ..-.++.|||+|+.+.+
T Consensus 202 ~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~ 281 (569)
T KOG0346|consen 202 YQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRC 281 (569)
T ss_pred hhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhh
Confidence 48999999999999999999999999988777777778889999999998888888888776 34678999999999999
Q ss_pred HHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc--------------------------------
Q 011620 346 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-------------------------------- 393 (481)
Q Consensus 346 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-------------------------------- 393 (481)
.++.=.|..+| ++..+++|.++...|..++++|+.|-.+++|||+
T Consensus 282 YrLkLfLeqFG---iksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D 358 (569)
T KOG0346|consen 282 YRLKLFLEQFG---IKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLD 358 (569)
T ss_pred HHHHHHHHHhC---cHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccC
Confidence 99999999998 8999999999999999999999999999999998
Q ss_pred ---cccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchh
Q 011620 394 ---AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTS 458 (481)
Q Consensus 394 ---~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~ 458 (481)
-+++|||+..+.+|++||+|.+...|+||+||++|.+++|.++.|+.+.+......++..+....
T Consensus 359 ~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~~ 426 (569)
T KOG0346|consen 359 KESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDEN 426 (569)
T ss_pred chhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhHH
Confidence 24579999999999999999999999999999999999999999999999887777776666653
No 27
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-50 Score=368.27 Aligned_cols=376 Identities=31% Similarity=0.434 Sum_probs=305.3
Q ss_pred CCCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCC-CCEEEECCCCchHHHHhHHHHHHHH
Q 011620 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 16 ~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~-~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
..+.+++-|.++ +++.+++++|.++||..|++.|..+++.++. | .|++=.|.||||||++|-+|+++.+
T Consensus 175 ~~~~DvsAW~~l------~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~----gk~DIlGaAeTGSGKTLAFGIPiv~~l 244 (731)
T KOG0347|consen 175 SSKVDVSAWKNL------FLPMEILRALSNLGFSRPTEIQSLVLPAAIR----GKVDILGAAETGSGKTLAFGIPIVERL 244 (731)
T ss_pred ccccChHHHhcC------CCCHHHHHHHHhcCCCCCccchhhcccHhhc----cchhcccccccCCCceeeecchhhhhh
Confidence 334455555555 4999999999999999999999999888776 6 7899999999999999999999854
Q ss_pred Hhhc----------cCCcc--EEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCc
Q 011620 95 SNRA----------VRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162 (481)
Q Consensus 95 ~~~~----------~~~~~--~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (481)
...+ .++++ .||++||++|+.|+..-+...+...++.+..++||....++.+.
T Consensus 245 ~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRl--------------- 309 (731)
T KOG0347|consen 245 LESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRL--------------- 309 (731)
T ss_pred hhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHH---------------
Confidence 3322 23444 99999999999999999999999999999999999988877543
Q ss_pred hhHHHhhccCCcEEEeCChhHHHhhhcCCCc--ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCcccccccccccc
Q 011620 163 EDVLQELQSAVDILVATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFL 240 (481)
Q Consensus 163 ~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~--~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 240 (481)
++..++|+|+||++|+.++.....+ ++++++++|+||+|+|+..+.-+.+..++..+.....+
T Consensus 310 ------L~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~--------- 374 (731)
T KOG0347|consen 310 ------LNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKN--------- 374 (731)
T ss_pred ------HhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcc---------
Confidence 4456899999999999999875542 47889999999999999999999999999888632222
Q ss_pred ccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccc----------------------c-ccCCceeeecC
Q 011620 241 PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ----------------------L-DLHHPLFLTTG 297 (481)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~----------------------~-~~~~~~~~~~~ 297 (481)
...|.+.+|||++-....-.. . +...|.++...
T Consensus 375 ------------------------~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t 430 (731)
T KOG0347|consen 375 ------------------------RQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLT 430 (731)
T ss_pred ------------------------cccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecC
Confidence 445899999999733221110 1 11122233222
Q ss_pred CccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHH
Q 011620 298 ETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377 (481)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~ 377 (481)
... .....+..-.+.|+..+|..++..++..+ ++++|||||+++.+.++.-+|...+ +....+|+.|.+..|...
T Consensus 431 ~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~---i~p~~LHA~M~QKqRLkn 505 (731)
T KOG0347|consen 431 PQS-ATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLD---IPPLPLHASMIQKQRLKN 505 (731)
T ss_pred cch-hHHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhcC---CCCchhhHHHHHHHHHHh
Confidence 222 22233333445555556655555555444 5899999999999999999999876 888999999999999999
Q ss_pred HHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccch
Q 011620 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCT 457 (481)
Q Consensus 378 ~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~ 457 (481)
+++|++....|||||+++.+|+|||+++|||+|-.|.+...|+||.||+.|++..|..+.++.|.+...+..|++.+.+.
T Consensus 506 LEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 506 LEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKK 585 (731)
T ss_pred HHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 011620 458 SDI 460 (481)
Q Consensus 458 ~~~ 460 (481)
.++
T Consensus 586 ~dl 588 (731)
T KOG0347|consen 586 EDL 588 (731)
T ss_pred cCC
Confidence 884
No 28
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-47 Score=346.59 Aligned_cols=371 Identities=28% Similarity=0.443 Sum_probs=323.9
Q ss_pred CCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHh
Q 011620 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (481)
Q Consensus 17 ~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~ 96 (481)
.|.++.+|+++ |+++.+..++.+-.|..|+|.|..+++.++. +++++=.|-||||||.+|+.|++.+++.
T Consensus 218 ~~rpvtsfeh~------gfDkqLm~airk~Ey~kptpiq~qalptals----grdvigIAktgSgktaAfi~pm~~himd 287 (731)
T KOG0339|consen 218 PPRPVTSFEHF------GFDKQLMTAIRKSEYEKPTPIQCQALPTALS----GRDVIGIAKTGSGKTAAFIWPMIVHIMD 287 (731)
T ss_pred CCCCcchhhhc------CchHHHHHHHhhhhcccCCcccccccccccc----cccchheeeccCcchhHHHHHHHHHhcc
Confidence 34455555555 6899999999999999999999999887765 9999999999999999999999988766
Q ss_pred hc----cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccC
Q 011620 97 RA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172 (481)
Q Consensus 97 ~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (481)
.. ..+|..+|++||++|+.|+..++++|++..|+++..++|+.+..++... +..+
T Consensus 288 q~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~---------------------Lk~g 346 (731)
T KOG0339|consen 288 QPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKE---------------------LKEG 346 (731)
T ss_pred hhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHh---------------------hhcC
Confidence 42 5688999999999999999999999999999999999999998888655 4477
Q ss_pred CcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhh
Q 011620 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 252 (481)
Q Consensus 173 ~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (481)
+.|+||||++|...+.. +..++..++++|+||+++|.+.+|...++.|....+
T Consensus 347 ~EivVaTPgRlid~Vkm-Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir-------------------------- 399 (731)
T KOG0339|consen 347 AEIVVATPGRLIDMVKM-KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR-------------------------- 399 (731)
T ss_pred CeEEEechHHHHHHHHh-hcccceeeeEEEEechhhhhccccHHHHHHHHhhcC--------------------------
Confidence 89999999999999987 557899999999999999999999999999998886
Q ss_pred ccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceeccc-CCCcHHHHHHHH-Hhc
Q 011620 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALL-QSL 330 (481)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l-~~~ 330 (481)
+..|++++|||+...+..+++..+.+|+.+..+.-. .....+.+....+. ...|..-++..| ...
T Consensus 400 ------------pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~ 466 (731)
T KOG0339|consen 400 ------------PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEKKLNWLLRHLVEFS 466 (731)
T ss_pred ------------CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHHHHHHHHHHhhhhc
Confidence 455999999999999999999999999877665333 22334444444444 445555555444 455
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEe
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~ 410 (481)
..+++|+|+.-...++.++..|.-.+ +.+..+||++.+.+|.+++..|+.++++||++|+...+|+|+|.+..||+|
T Consensus 467 S~gkvlifVTKk~~~e~i~a~Lklk~---~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvny 543 (731)
T KOG0339|consen 467 SEGKVLIFVTKKADAEEIAANLKLKG---FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNY 543 (731)
T ss_pred cCCcEEEEEeccCCHHHHHHHhcccc---ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecc
Confidence 67899999999999999999998666 899999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhhhh
Q 011620 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSDIL 461 (481)
Q Consensus 411 ~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 461 (481)
|...++..+.||+||.||.|.+|.+++++...+.++...|++.|+...+.+
T Consensus 544 D~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnV 594 (731)
T KOG0339|consen 544 DFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNV 594 (731)
T ss_pred cccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccC
Confidence 999999999999999999999999999999999999999999998877744
No 29
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=5.2e-47 Score=386.67 Aligned_cols=369 Identities=20% Similarity=0.234 Sum_probs=269.8
Q ss_pred CCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHh
Q 011620 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (481)
Q Consensus 17 ~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~ 96 (481)
.|.....+...+ . .+++.+.++|+++||..|+++|.+|++.+.+ |+++++.+|||||||++|++|+++.+..
T Consensus 7 ~p~~~a~~~~~~--~--~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~ 78 (742)
T TIGR03817 7 LPARAGRTAPWP--A--WAHPDVVAALEAAGIHRPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALAD 78 (742)
T ss_pred cCCCCcccCCCC--C--cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 444444444432 1 2899999999999999999999999999887 9999999999999999999999999876
Q ss_pred hccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEE
Q 011620 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (481)
Q Consensus 97 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 176 (481)
+ ++.++||++||++|+.|+.+.+..+. ..++++..+.|+...... ..+.++++|+
T Consensus 79 ~--~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r----------------------~~i~~~~~Ii 133 (742)
T TIGR03817 79 D--PRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTEER----------------------RWAREHARYV 133 (742)
T ss_pred C--CCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHHH----------------------HHHhcCCCEE
Confidence 3 45689999999999999999999987 347888888888764332 1234567999
Q ss_pred EeCChhHHHhhhcC-C--CcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhc
Q 011620 177 VATPGRLMDHINAT-R--GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253 (481)
Q Consensus 177 v~T~~~l~~~l~~~-~--~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (481)
|+||+++...+... . ...++++++||+||+|.+.+ .++..+..++..+......
T Consensus 134 vtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~---------------------- 190 (742)
T TIGR03817 134 LTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCAR---------------------- 190 (742)
T ss_pred EEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHh----------------------
Confidence 99999997543321 1 12377899999999999855 3565655555544321100
Q ss_pred cccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceeccc----------------CC
Q 011620 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE----------------SK 317 (481)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~ 317 (481)
.-...|++++|||+++.... .......+..+......... .......... ..
T Consensus 191 ---------~g~~~q~i~~SATi~n~~~~-~~~l~g~~~~~i~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~r~~~~~ 258 (742)
T TIGR03817 191 ---------YGASPVFVLASATTADPAAA-ASRLIGAPVVAVTEDGSPRG--ARTVALWEPPLTELTGENGAPVRRSASA 258 (742)
T ss_pred ---------cCCCCEEEEEecCCCCHHHH-HHHHcCCCeEEECCCCCCcC--ceEEEEecCCccccccccccccccchHH
Confidence 00223899999999866543 33344444433221111110 0001100000 11
Q ss_pred CcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcC-----CcceEEEEccCccChHHHHHHHHHHhcCCceEEEec
Q 011620 318 LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-----ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (481)
Q Consensus 318 ~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t 392 (481)
.+...+..++.. +.++||||+|++.++.++..+.+.. ..+.++..+||++++.+|..+++.|++|+.++||||
T Consensus 259 ~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaT 336 (742)
T TIGR03817 259 EAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATT 336 (742)
T ss_pred HHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEEC
Confidence 233344444443 5799999999999999999887631 113578899999999999999999999999999999
Q ss_pred ccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEe--CCcchhhhhhccccc
Q 011620 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH--KDEVCLVGCLTPLLL 455 (481)
Q Consensus 393 ~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~--~~~~~~~~~i~~~~~ 455 (481)
+++++|||+|++++||+++.|.+...|+||+||+||.|+.|.+++++. +.+...+..+.+.+.
T Consensus 337 d~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~ 401 (742)
T TIGR03817 337 NALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFD 401 (742)
T ss_pred chHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhc
Confidence 999999999999999999999999999999999999999999999886 345545555544443
No 30
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=5.4e-48 Score=339.67 Aligned_cols=380 Identities=27% Similarity=0.434 Sum_probs=318.1
Q ss_pred hhccCCCccc-CCCCCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchH
Q 011620 4 AKKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGK 82 (481)
Q Consensus 4 ~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGK 82 (481)
+.++..-++- ..+.|..+.+|-++. ++..+++.|++.|..+|+|.|..-++-++. |+++|=.+-|||||
T Consensus 151 ~vRk~~~I~veGd~ipPPIksF~eMK------FP~~~L~~lk~KGI~~PTpIQvQGlPvvLs----GRDmIGIAfTGSGK 220 (610)
T KOG0341|consen 151 LVRKQLHILVEGDDIPPPIKSFKEMK------FPKPLLRGLKKKGIVHPTPIQVQGLPVVLS----GRDMIGIAFTGSGK 220 (610)
T ss_pred HHHHhheEEeeCCCCCCchhhhhhcc------CCHHHHHHHHhcCCCCCCceeecCcceEee----cCceeeEEeecCCc
Confidence 3445555555 678888999999997 999999999999999999999998887776 99999999999999
Q ss_pred HHHhHHHHHHHHHhh-------ccCCccEEEEcccHHHHHHHHHHHHHhccccC------ceEEEeecCCchHHHHHHhh
Q 011620 83 TLSYALPIVQTLSNR-------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVG------LSVGLAVGQSSIADEISELI 149 (481)
Q Consensus 83 T~~~~~~i~~~l~~~-------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~ 149 (481)
|++|.+|++-..... ...||.-||+||+++|+.|.++.+..++..++ +.+.+..|+.+..++..
T Consensus 221 TlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~--- 297 (610)
T KOG0341|consen 221 TLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLD--- 297 (610)
T ss_pred eEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHH---
Confidence 999999987554332 24678899999999999999998887765442 56777777777666643
Q ss_pred hcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCc
Q 011620 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 229 (481)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~ 229 (481)
.+..+.+|+|+||++|.+.+.+ +.+.++-++++.+|||+++++.+|...++.++..+...
T Consensus 298 ------------------~v~~GvHivVATPGRL~DmL~K-K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~Q- 357 (610)
T KOG0341|consen 298 ------------------VVRRGVHIVVATPGRLMDMLAK-KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQ- 357 (610)
T ss_pred ------------------HHhcCeeEEEcCcchHHHHHHH-hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhh-
Confidence 3557789999999999999987 55778889999999999999999999999999988643
Q ss_pred cccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCccccc
Q 011620 230 ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLES 309 (481)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (481)
.|.+++|||++.....++...+..|+.++.+.........++.
T Consensus 358 -------------------------------------RQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQe 400 (610)
T KOG0341|consen 358 -------------------------------------RQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQE 400 (610)
T ss_pred -------------------------------------hheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHH
Confidence 3899999999999999999999999999988877554444433
Q ss_pred ceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEE
Q 011620 310 YKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389 (481)
Q Consensus 310 ~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 389 (481)
.. ......|..++++-+++. ..++||||.....++.+.++|--.| ..++.+||+.++.+|...++.|+.|+.+||
T Consensus 401 vE-yVkqEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKG---VEavaIHGGKDQedR~~ai~afr~gkKDVL 475 (610)
T KOG0341|consen 401 VE-YVKQEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKG---VEAVAIHGGKDQEDRHYAIEAFRAGKKDVL 475 (610)
T ss_pred HH-HHHhhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHcc---ceeEEeecCcchhHHHHHHHHHhcCCCceE
Confidence 32 334556777777766554 5799999999999999999987666 889999999999999999999999999999
Q ss_pred EecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcc-hhhhhhcccccchh
Q 011620 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-CLVGCLTPLLLCTS 458 (481)
Q Consensus 390 i~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~-~~~~~i~~~~~~~~ 458 (481)
|+|+.++.|+|+|++.|||+||.|..+.+|.||+||+||.|+.|.+.+|+++... ..+-.+.-.+...+
T Consensus 476 VATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~Eak 545 (610)
T KOG0341|consen 476 VATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAK 545 (610)
T ss_pred EEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999987543 33444444443333
No 31
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.7e-45 Score=359.29 Aligned_cols=334 Identities=22% Similarity=0.319 Sum_probs=247.8
Q ss_pred HcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.+||..|||+|.+|++.+++ ++++++.+|||+|||++|++|++.. +..++|++|+++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~~-------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALCS-------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHHc-------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 48999999999999999887 8999999999999999999998742 336999999999999988888765
Q ss_pred ccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHh-hccCCcEEEeCChhHHHhhhcCCCc-ccCCccEEE
Q 011620 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE-LQSAVDILVATPGRLMDHINATRGF-TLEHLCYLV 202 (481)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~I~v~T~~~l~~~l~~~~~~-~~~~~~~iV 202 (481)
|+.+..+.++....+.... +.. ....++|+++||+++.........+ ...++++||
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i------------------~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iV 132 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNV------------------LTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIA 132 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHH------------------HHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEE
Confidence 7788888777654433211 111 2234799999999875422110112 356789999
Q ss_pred EecchhhhhHh--HHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCc
Q 011620 203 VDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (481)
Q Consensus 203 iDE~H~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~ 280 (481)
|||||.+.+.+ +......+...... ++..+++++|||+++..
T Consensus 133 iDEaH~i~~~g~~fr~~~~~l~~l~~~------------------------------------~~~~~~l~lTAT~~~~~ 176 (470)
T TIGR00614 133 VDEAHCISQWGHDFRPDYKALGSLKQK------------------------------------FPNVPIMALTATASPSV 176 (470)
T ss_pred EeCCcccCccccccHHHHHHHHHHHHH------------------------------------cCCCceEEEecCCCHHH
Confidence 99999986543 23322222111110 12337899999997654
Q ss_pred cccc--ccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHH-hcCCCcEEEEcCCchhHHHHHHHHhhcCC
Q 011620 281 NKLA--QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGE 357 (481)
Q Consensus 281 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~~lVf~~s~~~~~~l~~~l~~~~~ 357 (481)
.... ...+..+...........+ .+............+...+. ...+.++||||++++.++.++..|.+.+
T Consensus 177 ~~di~~~l~l~~~~~~~~s~~r~nl-----~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g- 250 (470)
T TIGR00614 177 REDILRQLNLKNPQIFCTSFDRPNL-----YYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG- 250 (470)
T ss_pred HHHHHHHcCCCCCcEEeCCCCCCCc-----EEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC-
Confidence 4322 2233444444332221111 11111112233444555555 4455677999999999999999999876
Q ss_pred cceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEE
Q 011620 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437 (481)
Q Consensus 358 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~ 437 (481)
+.+..+|++++..+|..+++.|++|+.+|||||+++++|||+|++++||+++.|.|...|+||+||+||.|..|.|++
T Consensus 251 --~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~ 328 (470)
T TIGR00614 251 --IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHL 328 (470)
T ss_pred --CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEE
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCcchhhhhhccccc
Q 011620 438 LLHKDEVCLVGCLTPLLL 455 (481)
Q Consensus 438 ~~~~~~~~~~~~i~~~~~ 455 (481)
|+++.+...+..+.....
T Consensus 329 ~~~~~d~~~~~~~~~~~~ 346 (470)
T TIGR00614 329 FYAPADINRLRRLLMEEP 346 (470)
T ss_pred EechhHHHHHHHHHhcCC
Confidence 999999888887765443
No 32
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-45 Score=363.88 Aligned_cols=373 Identities=30% Similarity=0.481 Sum_probs=325.4
Q ss_pred CCCCCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHH
Q 011620 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (481)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~ 93 (481)
...+|..+-+|.++ |+...+++.++++||..|+|.|..||++|.. |+++|..|-||||||++|++|++.+
T Consensus 357 g~~~pkpv~sW~q~------gl~~~il~tlkkl~y~k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirh 426 (997)
T KOG0334|consen 357 GKECPKPVTSWTQC------GLSSKILETLKKLGYEKPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRH 426 (997)
T ss_pred cCCCCcccchHhhC------CchHHHHHHHHHhcCCCCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhh
Confidence 56788899999999 5999999999999999999999999999987 9999999999999999999999966
Q ss_pred HHhhc----cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhh
Q 011620 94 LSNRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169 (481)
Q Consensus 94 l~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (481)
..... ..||.++|++||++|+.|+.+++.+|+...++.+.+.+|+.....++.. +
T Consensus 427 i~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiae---------------------l 485 (997)
T KOG0334|consen 427 IKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAE---------------------L 485 (997)
T ss_pred hhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHH---------------------H
Confidence 54432 3589999999999999999999999999999999999999998888765 4
Q ss_pred ccCCcEEEeCChhHHHhhhcC--CCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccc
Q 011620 170 QSAVDILVATPGRLMDHINAT--RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 247 (481)
Q Consensus 170 ~~~~~I~v~T~~~l~~~l~~~--~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (481)
.+++.|+||||+++.+.+... +..++..+-++|+||+|++.+..|......|+...+
T Consensus 486 kRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr--------------------- 544 (997)
T KOG0334|consen 486 KRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR--------------------- 544 (997)
T ss_pred hcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc---------------------
Confidence 466799999999999877543 223456666999999999998888877766766653
Q ss_pred hhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceeccc-CCCcHHHHHHH
Q 011620 248 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVAL 326 (481)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~ 326 (481)
+-.|++++|||.+..+..++...++.|+.+..+.... +...+.+....+. ..+|...|.++
T Consensus 545 -----------------pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~sv-V~k~V~q~v~V~~~e~eKf~kL~eL 606 (997)
T KOG0334|consen 545 -----------------PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSV-VCKEVTQVVRVCAIENEKFLKLLEL 606 (997)
T ss_pred -----------------hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEcccee-EeccceEEEEEecCchHHHHHHHHH
Confidence 3348999999999888889988888998877775553 3444444444444 78888889888
Q ss_pred HHhc-CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCC
Q 011620 327 LQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405 (481)
Q Consensus 327 l~~~-~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~ 405 (481)
+... ..+++||||.+.+.|..+.+.|.+.+ +.+..+||+.++.+|...++.|+++.+.+||+|+.+.+|+|++.+.
T Consensus 607 l~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag---~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~ 683 (997)
T KOG0334|consen 607 LGERYEDGKTIIFVDKQEKADALLRDLQKAG---YNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELI 683 (997)
T ss_pred HHHHhhcCCEEEEEcCchHHHHHHHHHHhcC---cchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccce
Confidence 8744 57899999999999999999999877 8888899999999999999999999999999999999999999999
Q ss_pred EEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhh
Q 011620 406 NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSD 459 (481)
Q Consensus 406 ~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~ 459 (481)
.||+|++|.....|.+|.||+||.|+.|.+++|+.+.+.+....|++.+...+.
T Consensus 684 Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~ 737 (997)
T KOG0334|consen 684 LVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQ 737 (997)
T ss_pred EEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999965555
No 33
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=5.4e-44 Score=361.92 Aligned_cols=343 Identities=19% Similarity=0.244 Sum_probs=251.7
Q ss_pred CCHHHHHHHHH-cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 35 l~~~~~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
....+...+++ ||+..|||.|.++|+.++. |+++++.+|||+|||++|.+|++.. +..+|||+|+++|
T Consensus 444 w~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~~-------~GiTLVISPLiSL 512 (1195)
T PLN03137 444 WTKKLEVNNKKVFGNHSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALIC-------PGITLVISPLVSL 512 (1195)
T ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHHc-------CCcEEEEeCHHHH
Confidence 66777777776 8999999999999999987 9999999999999999999999842 2369999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHH---hhhcC
Q 011620 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD---HINAT 190 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~---~l~~~ 190 (481)
+.++...+... ++.+..+.++....+....+... ......++|+++||+++.. ++...
T Consensus 513 mqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l---------------~s~~g~~~ILyvTPERL~~~d~ll~~L 573 (1195)
T PLN03137 513 IQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQEL---------------SSEYSKYKLLYVTPEKVAKSDSLLRHL 573 (1195)
T ss_pred HHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHH---------------HhcCCCCCEEEEChHHhhcchHHHHHH
Confidence 98666655543 78888888888766553322110 0011457999999999853 12111
Q ss_pred CCc-ccCCccEEEEecchhhhhHh--HHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcce
Q 011620 191 RGF-TLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (481)
Q Consensus 191 ~~~-~~~~~~~iViDE~H~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (481)
..+ ....+.+|||||||.+.+.+ |......+-.+... ++..
T Consensus 574 ~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~------------------------------------fp~v 617 (1195)
T PLN03137 574 ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK------------------------------------FPNI 617 (1195)
T ss_pred HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHh------------------------------------CCCC
Confidence 111 13447899999999987754 33333222111100 1334
Q ss_pred eeEEEeEEEecCccccccc--ccCCceeeecCCccccCCcccccceecccCCC-cHHHHHHHHHhc-CCCcEEEEcCCch
Q 011620 268 VKMVLSATLTQDPNKLAQL--DLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSL-GEEKCIVFTSSVE 343 (481)
Q Consensus 268 ~~i~~Sat~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~-~~~~~lVf~~s~~ 343 (481)
+++++|||.+......... .+..+.++........ ..+....... ....+...+... .+.++||||.++.
T Consensus 618 PilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpN------L~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRk 691 (1195)
T PLN03137 618 PVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPN------LWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRM 691 (1195)
T ss_pred CeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccc------eEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchh
Confidence 7889999988765553222 2333333322222111 1111112111 223444555433 3568999999999
Q ss_pred hHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHH
Q 011620 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423 (481)
Q Consensus 344 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~ 423 (481)
.++.++..|...+ +.+..+||+|+..+|..+++.|.+|+.+|||||+++++|||+|++++||++++|.|+..|+|++
T Consensus 692 e~E~LAe~L~~~G---ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQri 768 (1195)
T PLN03137 692 DCEKVAERLQEFG---HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQEC 768 (1195)
T ss_pred HHHHHHHHHHHCC---CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhh
Confidence 9999999999877 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCcEEEEEeCCcchhhhhhcc
Q 011620 424 GRTARAGQLGRCFTLLHKDEVCLVGCLTP 452 (481)
Q Consensus 424 GR~~R~~~~g~~i~~~~~~~~~~~~~i~~ 452 (481)
||+||.|..|.|++|++..|...+..+.+
T Consensus 769 GRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 769 GRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred cccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 99999999999999999988877777664
No 34
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-45 Score=319.88 Aligned_cols=364 Identities=24% Similarity=0.360 Sum_probs=298.0
Q ss_pred CCCc-cccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 16 RSPV-DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 16 ~~p~-~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
.+|. ++++|++++ |.|++++++..|+|..|+..|..|++-++. ...+++|..+..|||||.+|.+.++.++
T Consensus 83 nsPlyS~ksFeeL~------LkPellkgly~M~F~kPskIQe~aLPlll~--~Pp~nlIaQsqsGtGKTaaFvL~MLsrv 154 (477)
T KOG0332|consen 83 NSPLYSAKSFEELR------LKPELLKGLYAMKFQKPSKIQETALPLLLA--EPPQNLIAQSQSGTGKTAAFVLTMLSRV 154 (477)
T ss_pred CCCccccccHHhhC------CCHHHHhHHHHhccCCcchHHHhhcchhhc--CCchhhhhhhcCCCchhHHHHHHHHHhc
Confidence 3444 577888886 999999999999999999999999887764 1247899999999999999999999887
Q ss_pred HhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCc
Q 011620 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVD 174 (481)
Q Consensus 95 ~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (481)
.-. ...|.++-++|+++|+.|..+.+.+.+++.++.+.....+....+- .. =...
T Consensus 155 d~~-~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-------~~-----------------i~eq 209 (477)
T KOG0332|consen 155 DPD-VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-------NK-----------------LTEQ 209 (477)
T ss_pred Ccc-ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-------Cc-----------------chhh
Confidence 654 3456788889999999999999999999887777666655411100 00 0137
Q ss_pred EEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhH-hHHhHHHHHHHhcccCccccccccccccccccccchhhhhc
Q 011620 175 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253 (481)
Q Consensus 175 I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (481)
|+|+||+.+.+++.....+.+..+.++|+|||+.+++. ++.+....|....+
T Consensus 210 IviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP--------------------------- 262 (477)
T KOG0332|consen 210 IVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP--------------------------- 262 (477)
T ss_pred eeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcC---------------------------
Confidence 99999999999999877788899999999999998764 35544444444332
Q ss_pred cccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceeccc-CCCcHHHHHHHHHhcCC
Q 011620 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGE 332 (481)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~ 332 (481)
+..|.+++|||.......++...+.++..+....+...+.. +.+++..|. ...|...+.++.....-
T Consensus 263 -----------~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~-IkQlyv~C~~~~~K~~~l~~lyg~~ti 330 (477)
T KOG0332|consen 263 -----------RNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDN-IKQLYVLCACRDDKYQALVNLYGLLTI 330 (477)
T ss_pred -----------CcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccc-hhhheeeccchhhHHHHHHHHHhhhhh
Confidence 23489999999999999999999999888877777655544 455555554 55688888887666667
Q ss_pred CcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecC
Q 011620 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK 412 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~ 412 (481)
+..+|||.++..|..++..+.+.| ..|..+||++...+|..++++|+.|..+|||+|+.+.+|||++.++.||+||+
T Consensus 331 gqsiIFc~tk~ta~~l~~~m~~~G---h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydl 407 (477)
T KOG0332|consen 331 GQSIIFCHTKATAMWLYEEMRAEG---HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDL 407 (477)
T ss_pred hheEEEEeehhhHHHHHHHHHhcC---ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCC
Confidence 889999999999999999999887 89999999999999999999999999999999999999999999999999999
Q ss_pred C------CChhhHHHHHhhhhcCCCCCcEEEEEeCCcc-hhhhhhcccc
Q 011620 413 P------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-CLVGCLTPLL 454 (481)
Q Consensus 413 p------~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~-~~~~~i~~~~ 454 (481)
| ....+|+||+||+||.|+.|.++.+++..+. +.+..|.+.+
T Consensus 408 P~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F 456 (477)
T KOG0332|consen 408 PVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHF 456 (477)
T ss_pred ccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHH
Confidence 8 4578999999999999999999999987554 4444554444
No 35
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=7.3e-44 Score=358.81 Aligned_cols=340 Identities=22% Similarity=0.294 Sum_probs=253.5
Q ss_pred CCHHHHHHHHH-cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 35 l~~~~~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
.++.....|++ +||..|||+|.++++.+++ ++++++.+|||+|||++|++|++.. +..++|++|+++|
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal~~-------~g~tlVisPl~sL 77 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPALVL-------DGLTLVVSPLISL 77 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHc-------CCCEEEEecHHHH
Confidence 55566667766 8999999999999999887 8999999999999999999998742 2369999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc
Q 011620 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
+.|+.+.+..+ |+.+..+.++........... .......+++++||+++...... ..+
T Consensus 78 ~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~-----------------~~~~g~~~il~~tPe~l~~~~~~-~~l 135 (607)
T PRK11057 78 MKDQVDQLLAN----GVAAACLNSTQTREQQLEVMA-----------------GCRTGQIKLLYIAPERLMMDNFL-EHL 135 (607)
T ss_pred HHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHH-----------------HHhCCCCcEEEEChHHhcChHHH-HHH
Confidence 99999888765 677777777665544322111 01123468999999998642211 113
Q ss_pred ccCCccEEEEecchhhhhHh--HHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEE
Q 011620 194 TLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (481)
...++++|||||||.+.+.+ +......+-..... ++..++++
T Consensus 136 ~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~------------------------------------~p~~~~v~ 179 (607)
T PRK11057 136 AHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR------------------------------------FPTLPFMA 179 (607)
T ss_pred hhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh------------------------------------CCCCcEEE
Confidence 34578999999999986533 22222222111100 12347899
Q ss_pred EeEEEecCcccc--cccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHH
Q 011620 272 LSATLTQDPNKL--AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349 (481)
Q Consensus 272 ~Sat~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~ 349 (481)
+|||++...... ....+..+............ .+.......+...+...+....+.++||||+++++++.++
T Consensus 180 lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl------~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la 253 (607)
T PRK11057 180 LTATADDTTRQDIVRLLGLNDPLIQISSFDRPNI------RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTA 253 (607)
T ss_pred EecCCChhHHHHHHHHhCCCCeEEEECCCCCCcc------eeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHH
Confidence 999987654432 22233444443322221111 1111222334455666677777889999999999999999
Q ss_pred HHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcC
Q 011620 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (481)
Q Consensus 350 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~ 429 (481)
..|.+.+ +.+..+|++++..+|..+++.|++|+.+|||||+++++|||+|++++||+++.|.|...|+|++||+||.
T Consensus 254 ~~L~~~g---~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~ 330 (607)
T PRK11057 254 ARLQSRG---ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD 330 (607)
T ss_pred HHHHhCC---CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCC
Confidence 9999876 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEeCCcchhhhhhcc
Q 011620 430 GQLGRCFTLLHKDEVCLVGCLTP 452 (481)
Q Consensus 430 ~~~g~~i~~~~~~~~~~~~~i~~ 452 (481)
|..|.|++|+++.+...+..+..
T Consensus 331 G~~~~~ill~~~~d~~~~~~~~~ 353 (607)
T PRK11057 331 GLPAEAMLFYDPADMAWLRRCLE 353 (607)
T ss_pred CCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999998877766553
No 36
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-44 Score=320.20 Aligned_cols=362 Identities=25% Similarity=0.419 Sum_probs=320.2
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc
Q 011620 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~ 99 (481)
.+.+|+++. |++++++++..+||.+|+..|++|+.-++. |.++++.+++|+|||.++..++++.+.-. .
T Consensus 24 vvdsfddm~------L~e~LLrgiy~yGFekPSaIQqraI~p~i~----G~dv~~qaqsgTgKt~af~i~iLq~iD~~-~ 92 (397)
T KOG0327|consen 24 VVDSFDDMN------LKESLLRGIYAYGFEKPSAIQQRAILPCIK----GHDVIAQAQSGTGKTAAFLISILQQIDMS-V 92 (397)
T ss_pred HhhhhhhcC------CCHHHHhHHHhhccCCchHHHhcccccccc----CCceeEeeeccccchhhhHHHHHhhcCcc-h
Confidence 467888885 999999999999999999999999765554 99999999999999999999999887443 3
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeC
Q 011620 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T 179 (481)
+...+++++|+++|+.|..+....++...+.++..+.|+.....+...+. ...++|+|+|
T Consensus 93 ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~--------------------~~~~hivvGT 152 (397)
T KOG0327|consen 93 KETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALL--------------------KDKPHIVVGT 152 (397)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhh--------------------ccCceeecCC
Confidence 45579999999999999999999998888999998888887664433322 2447999999
Q ss_pred ChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccC
Q 011620 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
|++....+... .+....+.+.|+||++.++..++.+.+..++...+.
T Consensus 153 pgrV~dml~~~-~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~-------------------------------- 199 (397)
T KOG0327|consen 153 PGRVFDMLNRG-SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPS-------------------------------- 199 (397)
T ss_pred chhHHHhhccc-cccccceeEEeecchHhhhccchHHHHHHHHHHcCc--------------------------------
Confidence 99999998874 677888999999999999999999999999998864
Q ss_pred CCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEc
Q 011620 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (481)
Q Consensus 260 ~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~ 339 (481)
..|.+++|||.+.+.......++.+|+.+....... ..+.+.+++.......|...+..+.+ +-...+|||
T Consensus 200 ------~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~l-tl~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~ 270 (397)
T KOG0327|consen 200 ------DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDEL-TLEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFC 270 (397)
T ss_pred ------chhheeecccCcHHHHHHHHHhccCceEEEecchhh-hhhheeeeeeeccccccccHHHHHHH--hhhcceEEe
Confidence 338999999999999999999999999887776653 35667788888888889888888888 566889999
Q ss_pred CCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhH
Q 011620 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (481)
Q Consensus 340 ~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~ 419 (481)
++.+.+..+...|...+ ..+..+|+++.+.+|..++..|+.|..+|||+|+.+++|+|+..++.||+|+.|....+|
T Consensus 271 nt~r~v~~l~~~L~~~~---~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~y 347 (397)
T KOG0327|consen 271 NTRRKVDNLTDKLRAHG---FTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENY 347 (397)
T ss_pred cchhhHHHHHHHHhhCC---ceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhh
Confidence 99999999999997776 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccch
Q 011620 420 IHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCT 457 (481)
Q Consensus 420 ~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~ 457 (481)
++|+||+||.|.+|.++.++...+...+++++++|...
T Consensus 348 ihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~ 385 (397)
T KOG0327|consen 348 IHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTP 385 (397)
T ss_pred hhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCc
Confidence 99999999999999999999999999999999877654
No 37
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-44 Score=334.43 Aligned_cols=385 Identities=28% Similarity=0.374 Sum_probs=315.3
Q ss_pred CCCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHH
Q 011620 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 16 ~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~ 95 (481)
..|....+|.++.-+.. .++.+++.+.+.+|..|+|.|..|++.++. +++++.++|||+|||++|.+|++..+.
T Consensus 126 ~~~~~l~~f~~lt~~~~--~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~ 199 (593)
T KOG0344|consen 126 HLPPPLLSFSDLTYDYS--MNKRLLENLQELGFDEPTPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLK 199 (593)
T ss_pred CCCCccccccccchhhh--hcHHHHHhHhhCCCCCCCcccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHH
Confidence 34677777777654443 788999999999999999999999988876 899999999999999999999999987
Q ss_pred hhc----cCCccEEEEcccHHHHHHHHHHHHHhc--cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhh
Q 011620 96 NRA----VRCLRALVVLPTRDLALQVKDVFAAIA--PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169 (481)
Q Consensus 96 ~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (481)
... ..|.+++|+.|+++|+.|+++++.++. ...++.+............... ..
T Consensus 200 ~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~--------------------~~ 259 (593)
T KOG0344|consen 200 DLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAF--------------------LS 259 (593)
T ss_pred HhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccch--------------------hH
Confidence 765 667899999999999999999999998 4434443333322211111100 01
Q ss_pred ccCCcEEEeCChhHHHhhhcCC-CcccCCccEEEEecchhhhhH-hHHhHHHHHHHhcccCccccccccccccccccccc
Q 011620 170 QSAVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL 247 (481)
Q Consensus 170 ~~~~~I~v~T~~~l~~~l~~~~-~~~~~~~~~iViDE~H~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (481)
...++|+|+||.++..++.... .+.+..+.++|+||++.+.+. .|...+..|+..+.++.
T Consensus 260 ~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~------------------ 321 (593)
T KOG0344|consen 260 DEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPD------------------ 321 (593)
T ss_pred HHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcc------------------
Confidence 1335899999999999887632 256888999999999999999 88888888888776532
Q ss_pred hhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHH
Q 011620 248 KTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL 327 (481)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 327 (481)
..+-++|||.+..+..++.....+...+..+.........-+.+........|...+.+++
T Consensus 322 -------------------i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v 382 (593)
T KOG0344|consen 322 -------------------IRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLV 382 (593)
T ss_pred -------------------hhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHH
Confidence 2566789999999999999888888887777665443333333444445667888888888
Q ss_pred HhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEE
Q 011620 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407 (481)
Q Consensus 328 ~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~v 407 (481)
...-..++|||+.+.+.|..|...|..+ .++.+..+||+.++.+|++.+++|+.|++++||||+.+++|+|+.+++.|
T Consensus 383 ~~g~~PP~lIfVQs~eRak~L~~~L~~~--~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~V 460 (593)
T KOG0344|consen 383 ASGFKPPVLIFVQSKERAKQLFEELEIY--DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLV 460 (593)
T ss_pred hccCCCCeEEEEecHHHHHHHHHHhhhc--cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceE
Confidence 8888899999999999999999999532 23789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhhhhhhhh
Q 011620 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSDILQRKT 465 (481)
Q Consensus 408 I~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 465 (481)
|+||.|.+...|++|+||+||+|+.|.+++|+...+...+..+.+.++...-.+....
T Consensus 461 InyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~ 518 (593)
T KOG0344|consen 461 INYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKI 518 (593)
T ss_pred EecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHH
Confidence 9999999999999999999999999999999999999999999998888665555444
No 38
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.6e-42 Score=350.64 Aligned_cols=335 Identities=20% Similarity=0.291 Sum_probs=251.6
Q ss_pred HHHHH-cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHH
Q 011620 41 VALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (481)
Q Consensus 41 ~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~ 119 (481)
+.|++ |||.+|||.|.++++.+++ |+++++.+|||+|||++|++|++.. +..++|++|+++|+.|+.+
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal~~-------~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPALLL-------KGLTVVISPLISLMKDQVD 71 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHHHc-------CCcEEEEcCCHHHHHHHHH
Confidence 44555 8999999999999999987 8999999999999999999998731 2368999999999999988
Q ss_pred HHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCcc
Q 011620 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (481)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~ 199 (481)
.+..+ |+++..+.++....+...... .......+|+++||+++...... ..+...+++
T Consensus 72 ~l~~~----gi~~~~~~s~~~~~~~~~~~~-----------------~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~ 129 (591)
T TIGR01389 72 QLRAA----GVAAAYLNSTLSAKEQQDIEK-----------------ALVNGELKLLYVAPERLEQDYFL-NMLQRIPIA 129 (591)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHhCCCCCEEEEChhHhcChHHH-HHHhcCCCC
Confidence 88875 778888888776554322110 11224579999999998542221 113355789
Q ss_pred EEEEecchhhhhHh--HHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEe
Q 011620 200 YLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277 (481)
Q Consensus 200 ~iViDE~H~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~ 277 (481)
+|||||||.+...+ +......+...... ++..+++++|||.+
T Consensus 130 ~iViDEaH~i~~~g~~frp~y~~l~~l~~~------------------------------------~~~~~vi~lTAT~~ 173 (591)
T TIGR01389 130 LVAVDEAHCVSQWGHDFRPEYQRLGSLAER------------------------------------FPQVPRIALTATAD 173 (591)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHh------------------------------------CCCCCEEEEEeCCC
Confidence 99999999886532 33222222222111 12235899999987
Q ss_pred cCcccccccc--cCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhc
Q 011620 278 QDPNKLAQLD--LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355 (481)
Q Consensus 278 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~ 355 (481)
.......... +..+..+....... ...+.......+...+...+....+.++||||+++..++.+++.|.+.
T Consensus 174 ~~~~~~i~~~l~~~~~~~~~~~~~r~------nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~ 247 (591)
T TIGR01389 174 AETRQDIRELLRLADANEFITSFDRP------NLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ 247 (591)
T ss_pred HHHHHHHHHHcCCCCCCeEecCCCCC------CcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC
Confidence 6655433322 22333222211111 111222223445666777777766789999999999999999999877
Q ss_pred CCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcE
Q 011620 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435 (481)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~ 435 (481)
+ +.+..+|++++..+|..+++.|.+|+.+|||||+++++|||+|++++||+++.|.|...|.|++||+||.|..+.|
T Consensus 248 g---~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~ 324 (591)
T TIGR01389 248 G---ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEA 324 (591)
T ss_pred C---CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceE
Confidence 6 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcchhhhhhccc
Q 011620 436 FTLLHKDEVCLVGCLTPL 453 (481)
Q Consensus 436 i~~~~~~~~~~~~~i~~~ 453 (481)
++++++.+...+..+.+.
T Consensus 325 il~~~~~d~~~~~~~i~~ 342 (591)
T TIGR01389 325 ILLYSPADIALLKRRIEQ 342 (591)
T ss_pred EEecCHHHHHHHHHHHhc
Confidence 999999988777766544
No 39
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.7e-43 Score=329.94 Aligned_cols=351 Identities=25% Similarity=0.409 Sum_probs=301.3
Q ss_pred CCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 29 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
++++. |...++..|...+|..|++.|..||+.++. +-|+||.+-.|+|||++|...+++.+... ...+..+|++
T Consensus 27 fe~l~-l~r~vl~glrrn~f~~ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~-~~~~q~~Iv~ 100 (980)
T KOG4284|consen 27 FEQLA-LWREVLLGLRRNAFALPTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSR-SSHIQKVIVT 100 (980)
T ss_pred HHHHH-HHHHHHHHHHhhcccCCCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcc-cCcceeEEEe
Confidence 44443 888999999999999999999999998886 88999999999999999998888777654 3456799999
Q ss_pred ccHHHHHHHHHHHHHhccc-cCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhh
Q 011620 109 PTRDLALQVKDVFAAIAPA-VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (481)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l 187 (481)
||++++.|+.+.+..++.. .|.++..+.||.........+ +.++|+|+||+++.++.
T Consensus 101 PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl----------------------k~~rIvIGtPGRi~qL~ 158 (980)
T KOG4284|consen 101 PTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL----------------------KQTRIVIGTPGRIAQLV 158 (980)
T ss_pred cchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh----------------------hhceEEecCchHHHHHH
Confidence 9999999999999999974 489999999998776654332 44689999999999999
Q ss_pred hcCCCcccCCccEEEEecchhhhh-HhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcc
Q 011620 188 NATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (481)
Q Consensus 188 ~~~~~~~~~~~~~iViDE~H~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (481)
.. +.+++++++++|+||||.+.+ ..|...+..|+..++...
T Consensus 159 el-~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~r------------------------------------- 200 (980)
T KOG4284|consen 159 EL-GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIR------------------------------------- 200 (980)
T ss_pred Hh-cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhh-------------------------------------
Confidence 87 668999999999999999988 778888888888776443
Q ss_pred eeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccC-------CCcHHHHHHHHHhcCCCcEEEEc
Q 011620 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-------KLKPLYLVALLQSLGEEKCIVFT 339 (481)
Q Consensus 267 ~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~k~~~l~~~l~~~~~~~~lVf~ 339 (481)
|++.+|||.+.+.+.....++.+|..+.....+..+...-+.+...+.. ..|...|-+++.+.+-...||||
T Consensus 201 -Qv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~ 279 (980)
T KOG4284|consen 201 -QVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFC 279 (980)
T ss_pred -eeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhh
Confidence 8999999999999999999999999888777765554433333333332 13666677778888888999999
Q ss_pred CCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhH
Q 011620 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (481)
Q Consensus 340 ~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~ 419 (481)
+..-.|+-++..|...| +.+.++.|.|++.+|..+++.+++-.++|||+|+...+|||-+.++.||+.|.|.+..+|
T Consensus 280 ~~~sra~~~a~~L~ssG---~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY 356 (980)
T KOG4284|consen 280 DQISRAEPIATHLKSSG---LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETY 356 (980)
T ss_pred hhhhhhhHHHHHhhccC---CCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHH
Confidence 99999999999999888 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCcEEEEEeCCcc-hhhhh
Q 011620 420 IHRAGRTARAGQLGRCFTLLHKDEV-CLVGC 449 (481)
Q Consensus 420 ~Q~~GR~~R~~~~g~~i~~~~~~~~-~~~~~ 449 (481)
.||+||+||.|-.|.+++|+..+.. +.+..
T Consensus 357 ~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~ 387 (980)
T KOG4284|consen 357 FHRIGRAGRFGAHGAAVTLLEDERELKGFTA 387 (980)
T ss_pred HHHhhhcccccccceeEEEeccchhhhhhHH
Confidence 9999999999999999999886554 44433
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.3e-42 Score=356.95 Aligned_cols=341 Identities=24% Similarity=0.312 Sum_probs=249.5
Q ss_pred CCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 29 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
+++++ |++.+++.+.+.|+.+|+|+|.+|++..+. .++++++++|||+|||++|.++++..+.. +.+++|++
T Consensus 3 ~~~l~-lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~---~g~nvlv~APTGSGKTlia~lail~~l~~----~~kal~i~ 74 (737)
T PRK02362 3 IAELP-LPEGVIEFYEAEGIEELYPPQAEAVEAGLL---DGKNLLAAIPTASGKTLIAELAMLKAIAR----GGKALYIV 74 (737)
T ss_pred hhhcC-CCHHHHHHHHhCCCCcCCHHHHHHHHHHHh---CCCcEEEECCCcchHHHHHHHHHHHHHhc----CCcEEEEe
Confidence 34443 999999999999999999999999987332 48999999999999999999999988753 44799999
Q ss_pred ccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhh
Q 011620 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (481)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~ 188 (481)
|+++|+.|+++.++.+.. .|+++..++|+...... ....++|+|+||+++..++.
T Consensus 75 P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~------------------------~l~~~~IiV~Tpek~~~llr 129 (737)
T PRK02362 75 PLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE------------------------WLGDNDIIVATSEKVDSLLR 129 (737)
T ss_pred ChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc------------------------ccCCCCEEEECHHHHHHHHh
Confidence 999999999999998754 48899999887643321 11346999999999988887
Q ss_pred cCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCccee
Q 011620 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (481)
Q Consensus 189 ~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (481)
+.. ..+.++++||+||+|.+.+..++..++.++..+.... +..|
T Consensus 130 ~~~-~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~-----------------------------------~~~q 173 (737)
T PRK02362 130 NGA-PWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN-----------------------------------PDLQ 173 (737)
T ss_pred cCh-hhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC-----------------------------------CCCc
Confidence 633 3477899999999999988888888888777664322 2248
Q ss_pred eEEEeEEEecCcccccccccC------CceeeecC---CccccCCcccccceecccC-CCcHHHHHHHHHhcCCCcEEEE
Q 011620 269 KMVLSATLTQDPNKLAQLDLH------HPLFLTTG---ETRYKLPERLESYKLICES-KLKPLYLVALLQSLGEEKCIVF 338 (481)
Q Consensus 269 ~i~~Sat~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lVf 338 (481)
++++|||+++......+.... .|+..... ........ ......... ......+...+. .++++|||
T Consensus 174 ii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF 249 (737)
T PRK02362 174 VVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD--SQREVEVPSKDDTLNLVLDTLE--EGGQCLVF 249 (737)
T ss_pred EEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc--ccccCCCccchHHHHHHHHHHH--cCCCeEEE
Confidence 999999986422211111100 01100000 00000000 000000001 111222222222 46799999
Q ss_pred cCCchhHHHHHHHHhhcCC---------------------------------cceEEEEccCccChHHHHHHHHHHhcCC
Q 011620 339 TSSVESTHRLCTLLNHFGE---------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGK 385 (481)
Q Consensus 339 ~~s~~~~~~l~~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 385 (481)
|+++..++.++..|..... ....+.++|++++..+|..+++.|++|.
T Consensus 250 ~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~ 329 (737)
T PRK02362 250 VSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRL 329 (737)
T ss_pred EeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCC
Confidence 9999999999888864311 0136889999999999999999999999
Q ss_pred ceEEEecccccccCCCCCCCEEEE----ec-----CCCChhhHHHHHhhhhcCCCC--CcEEEEEeCC
Q 011620 386 IQVLVSSDAMTRGMDVEGVNNVVN----YD-----KPAYIKTYIHRAGRTARAGQL--GRCFTLLHKD 442 (481)
Q Consensus 386 ~~vLi~t~~l~~Gidi~~~~~vI~----~~-----~p~s~~~~~Q~~GR~~R~~~~--g~~i~~~~~~ 442 (481)
++|||||++++.|+|+|..++||. |+ .|.+..+|.||+||+||.|.+ |.+++++...
T Consensus 330 i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 330 IKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 999999999999999999988886 54 578899999999999998865 7888888664
No 41
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-43 Score=311.64 Aligned_cols=363 Identities=30% Similarity=0.418 Sum_probs=324.5
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccC
Q 011620 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~ 100 (481)
.++|.++ ||+..+.+++.+-||+.|+|.|++.++-+++ ++++.--+-||+|||.++++|+++.+......
T Consensus 20 ~g~fqsm------gL~~~v~raI~kkg~~~ptpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~ 89 (529)
T KOG0337|consen 20 SGGFQSM------GLDYKVLRAIHKKGFNTPTPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQT 89 (529)
T ss_pred CCCcccc------CCCHHHHHHHHHhhcCCCCchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhcccc
Confidence 6777777 5999999999999999999999999888887 99999999999999999999999999888777
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~ 180 (481)
|.|.+++.||++|+.|..+..+.+....++.+.+++|+....++.. .+.+++||+++||
T Consensus 90 g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~---------------------~l~~npDii~ATp 148 (529)
T KOG0337|consen 90 GLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFI---------------------LLNENPDIIIATP 148 (529)
T ss_pred ccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHH---------------------HhccCCCEEEecC
Confidence 8899999999999999999999999999999999999888777644 3567899999999
Q ss_pred hhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCC
Q 011620 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
.++..+... ..+.++.+.+|||||++.+.+.+|.+.+..++...+..
T Consensus 149 gr~~h~~ve-m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~-------------------------------- 195 (529)
T KOG0337|consen 149 GRLLHLGVE-MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPES-------------------------------- 195 (529)
T ss_pred ceeeeeehh-eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCc--------------------------------
Confidence 999887665 33678899999999999999999999999999877642
Q ss_pred CCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcC-CCcEEEEc
Q 011620 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG-EEKCIVFT 339 (481)
Q Consensus 261 ~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~lVf~ 339 (481)
.|.+++|||++.........++.+|..+....+ ..+.+..+..+..+...+|...|+.++.... +..++||+
T Consensus 196 ------~QTllfSatlp~~lv~fakaGl~~p~lVRldve-tkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~ 268 (529)
T KOG0337|consen 196 ------RQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVE-TKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFV 268 (529)
T ss_pred ------ceEEEEeccCchhhHHHHHccCCCCceEEeehh-hhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEe
Confidence 289999999998888899999999988874433 3456667778888888899999999887654 46899999
Q ss_pred CCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhH
Q 011620 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (481)
Q Consensus 340 ~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~ 419 (481)
++..+++.+...+...+ +.+..+.+.+++.-|...+..|..++..+||.|+.+.+|+|+|.++.||+|++|.....|
T Consensus 269 ~tk~hve~~~~ll~~~g---~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klF 345 (529)
T KOG0337|consen 269 ATKHHVEYVRGLLRDFG---GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLF 345 (529)
T ss_pred cccchHHHHHHHHHhcC---CCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceE
Confidence 99999999999999887 888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccch
Q 011620 420 IHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCT 457 (481)
Q Consensus 420 ~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~ 457 (481)
.+|+||+.|.|+.|.++.++.+.+...+-.|..++..+
T Consensus 346 vhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~ 383 (529)
T KOG0337|consen 346 VHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRP 383 (529)
T ss_pred EEEecchhhccccceEEEEEecccchhhhhhhhhcCCc
Confidence 99999999999999999999999998888887777654
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=7.9e-42 Score=355.72 Aligned_cols=344 Identities=21% Similarity=0.258 Sum_probs=243.5
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc-----cCCccEEEEcc
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLP 109 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~-----~~~~~~lil~P 109 (481)
+++.+.+.+.+ +|..|+|+|.+|++.+.+ ++++++.+|||||||++|++|+++.+.... .++.+++|++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsP 92 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSP 92 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcC
Confidence 78888888777 788999999999999876 899999999999999999999998876532 23567999999
Q ss_pred cHHHHHHHHHHHHH-------hc----ccc-CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEE
Q 011620 110 TRDLALQVKDVFAA-------IA----PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (481)
Q Consensus 110 ~~~L~~q~~~~~~~-------~~----~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v 177 (481)
+++|+.|+++.+.. ++ ... ++.+...+|+........ .+..+++|+|
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~---------------------~l~~~p~IlV 151 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQK---------------------MLKKPPHILI 151 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHH---------------------HHhCCCCEEE
Confidence 99999998876542 22 222 678888898876554422 2335679999
Q ss_pred eCChhHHHhhhcCCC-cccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhcccc
Q 011620 178 ATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (481)
Q Consensus 178 ~T~~~l~~~l~~~~~-~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (481)
|||++|..++..... -.+.++++||+||+|.+.+..++..+...+..+.....
T Consensus 152 tTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~-------------------------- 205 (876)
T PRK13767 152 TTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAG-------------------------- 205 (876)
T ss_pred ecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcC--------------------------
Confidence 999999877765321 14778999999999999877766666555554432110
Q ss_pred ccCCCCCCcceeeEEEeEEEecCcccccc-ccc------CCceeeecCCccccCC----cccccceecccCCCcHHHHHH
Q 011620 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LDL------HHPLFLTTGETRYKLP----ERLESYKLICESKLKPLYLVA 325 (481)
Q Consensus 257 ~~~~~~~~~~~~~i~~Sat~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~k~~~l~~ 325 (481)
...+.+++|||+.+. ..... ... ..+..+.......... ...... ...........+..
T Consensus 206 --------~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l-~~~~~~~~~~~l~~ 275 (876)
T PRK13767 206 --------GEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDL-IHTPAEEISEALYE 275 (876)
T ss_pred --------CCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccc-cccccchhHHHHHH
Confidence 223789999998642 22111 111 1111111110000000 000000 00111111112222
Q ss_pred HHHh--cCCCcEEEEcCCchhHHHHHHHHhhcCC---cceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCC
Q 011620 326 LLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400 (481)
Q Consensus 326 ~l~~--~~~~~~lVf~~s~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gid 400 (481)
.+.. ..++++||||+++..++.++..|.+... .+..+..+||+++..+|..+++.|++|+.++||||++++.|||
T Consensus 276 ~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GID 355 (876)
T PRK13767 276 TLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGID 355 (876)
T ss_pred HHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCC
Confidence 2221 1357899999999999999999987422 1357889999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCCCChhhHHHHHhhhhcC-CCCCcEEEEEe
Q 011620 401 VEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQLGRCFTLLH 440 (481)
Q Consensus 401 i~~~~~vI~~~~p~s~~~~~Q~~GR~~R~-~~~g~~i~~~~ 440 (481)
+|++++||+++.|.+...|+||+||+||. |..+.+.++..
T Consensus 356 ip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 356 IGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred CCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999999999999985 33445555544
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=8.8e-42 Score=339.17 Aligned_cols=343 Identities=21% Similarity=0.305 Sum_probs=267.8
Q ss_pred CCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc----cCCccEEEEc
Q 011620 33 PCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVL 108 (481)
Q Consensus 33 ~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~----~~~~~~lil~ 108 (481)
.-|++.+++.+... |.+|+|.|.+|++.+.+ |++++|.||||||||.++++|+++.+.... ..+-.+||++
T Consensus 6 ~~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIs 80 (814)
T COG1201 6 NILDPRVREWFKRK-FTSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYIS 80 (814)
T ss_pred hhcCHHHHHHHHHh-cCCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeC
Confidence 34899999999987 89999999999999987 999999999999999999999999988773 2356899999
Q ss_pred ccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhh
Q 011620 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (481)
Q Consensus 109 P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~ 188 (481)
|.++|...+.+.+...+...|+++...+|+.+..+..+ ...++|+|+||||++|.-++.
T Consensus 81 PLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r---------------------~~~~PPdILiTTPEsL~lll~ 139 (814)
T COG1201 81 PLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQK---------------------MLKNPPHILITTPESLAILLN 139 (814)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhh---------------------ccCCCCcEEEeChhHHHHHhc
Confidence 99999999999999999999999999999987665533 245678999999999998887
Q ss_pred cCCC-cccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcce
Q 011620 189 ATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (481)
Q Consensus 189 ~~~~-~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (481)
.... -.+.++.++|+||.|.+.....+.++..-++.+..... .+
T Consensus 140 ~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~-----------------------------------~~ 184 (814)
T COG1201 140 SPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG-----------------------------------DF 184 (814)
T ss_pred CHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc-----------------------------------cc
Confidence 6321 24889999999999999988888777666665543221 34
Q ss_pred eeEEEeEEEecCcccccccccCC-ceee-ecCCccccCCcccccce----e-cccCCCcHHHHHHHHHhcCCCcEEEEcC
Q 011620 268 VKMVLSATLTQDPNKLAQLDLHH-PLFL-TTGETRYKLPERLESYK----L-ICESKLKPLYLVALLQSLGEEKCIVFTS 340 (481)
Q Consensus 268 ~~i~~Sat~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~----~-~~~~~~k~~~l~~~l~~~~~~~~lVf~~ 340 (481)
|.|++|||..+............ +..+ ...... ...-.+.... . ..........+.++++++ ..+|||+|
T Consensus 185 qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k-~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~N 261 (814)
T COG1201 185 QRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAK-KLEIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLIFTN 261 (814)
T ss_pred EEEeehhccCCHHHHHHHhcCCCCceEEEEcccCC-cceEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEEEEe
Confidence 89999999975544433333332 2222 221111 1000000000 0 011112333444555553 38999999
Q ss_pred CchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHH
Q 011620 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (481)
Q Consensus 341 s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~ 420 (481)
++..++.++..|.+.+. ..+..+||.++...|..+.++|++|+.+.+|||++++-|||+.+++.||+++.|.+...+.
T Consensus 262 TR~~aE~l~~~L~~~~~--~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~l 339 (814)
T COG1201 262 TRSGAERLAFRLKKLGP--DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFL 339 (814)
T ss_pred ChHHHHHHHHHHHHhcC--CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHh
Confidence 99999999999998754 6788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhc-CCCCCcEEEEEeC
Q 011620 421 HRAGRTAR-AGQLGRCFTLLHK 441 (481)
Q Consensus 421 Q~~GR~~R-~~~~g~~i~~~~~ 441 (481)
||+||+|+ .+.....+++...
T Consensus 340 QRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 340 QRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HhccccccccCCcccEEEEecC
Confidence 99999987 4555667766655
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=5.4e-40 Score=338.47 Aligned_cols=333 Identities=22% Similarity=0.278 Sum_probs=243.3
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHh-hhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQE-TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~-~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
+++.+.+.+++.|+.+|+|+|.+|++. +.+ ++++++++|||+|||++|.++++..+... +.+++|++|+++|
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~----g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~aL 80 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGVLE----GKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLKAL 80 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHhC----CCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChHHH
Confidence 999999999999999999999999986 343 89999999999999999999999887643 4579999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc
Q 011620 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
+.|+++.+..+. ..|+++..++|+...... ....++|+|+||+++..++... ..
T Consensus 81 a~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~------------------------~~~~~~IiV~Tpe~~~~ll~~~-~~ 134 (720)
T PRK00254 81 AEEKYREFKDWE-KLGLRVAMTTGDYDSTDE------------------------WLGKYDIIIATAEKFDSLLRHG-SS 134 (720)
T ss_pred HHHHHHHHHHHh-hcCCEEEEEeCCCCCchh------------------------hhccCCEEEEcHHHHHHHHhCC-ch
Confidence 999999998864 358899999987653321 1144699999999998887653 34
Q ss_pred ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEe
Q 011620 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (481)
.++++++||+||+|.+.+..++..++.++..+.. ..+++++|
T Consensus 135 ~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~--------------------------------------~~qiI~lS 176 (720)
T PRK00254 135 WIKDVKLVVADEIHLIGSYDRGATLEMILTHMLG--------------------------------------RAQILGLS 176 (720)
T ss_pred hhhcCCEEEEcCcCccCCccchHHHHHHHHhcCc--------------------------------------CCcEEEEE
Confidence 4788999999999999888788788777765531 23899999
Q ss_pred EEEecCcccccccccCCceeeecCCccccCCcc-cccceecccCC-------CcHHHHHHHHHhcCCCcEEEEcCCchhH
Q 011620 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER-LESYKLICESK-------LKPLYLVALLQSLGEEKCIVFTSSVEST 345 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~k~~~l~~~l~~~~~~~~lVf~~s~~~~ 345 (481)
||+++. ..+.. ++...... .......+... ........... .....+...+. .++++||||+++..+
T Consensus 177 ATl~n~-~~la~-wl~~~~~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~ 251 (720)
T PRK00254 177 ATVGNA-EELAE-WLNAELVV-SDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSA 251 (720)
T ss_pred ccCCCH-HHHHH-HhCCcccc-CCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHH
Confidence 999643 33222 12111111 11110000000 00001111111 01122333333 367999999999999
Q ss_pred HHHHHHHhhcC----------------------C--------cceEEEEccCccChHHHHHHHHHHhcCCceEEEecccc
Q 011620 346 HRLCTLLNHFG----------------------E--------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (481)
Q Consensus 346 ~~l~~~l~~~~----------------------~--------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l 395 (481)
+.++..+.+.. . ....+.++|+++++.+|..+++.|++|..+|||||+++
T Consensus 252 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tL 331 (720)
T PRK00254 252 EKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTL 331 (720)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHH
Confidence 88877664310 0 01358899999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEE-------ecCC-CChhhHHHHHhhhhcCC--CCCcEEEEEeCCc
Q 011620 396 TRGMDVEGVNNVVN-------YDKP-AYIKTYIHRAGRTARAG--QLGRCFTLLHKDE 443 (481)
Q Consensus 396 ~~Gidi~~~~~vI~-------~~~p-~s~~~~~Q~~GR~~R~~--~~g~~i~~~~~~~ 443 (481)
+.|+|+|..++||. ++.| .+..+|.||+||+||.| ..|.+++++...+
T Consensus 332 a~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 332 SAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred hhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999998884 3333 24678999999999965 5688999987654
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.5e-39 Score=333.11 Aligned_cols=325 Identities=18% Similarity=0.218 Sum_probs=239.1
Q ss_pred HHHHHHHHcCCCCCchhhHHHHHhhhCCCCCC--CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHH
Q 011620 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 38 ~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~--~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~ 115 (481)
........++| +|++.|.+|++.+.+.+..+ .+.++++|||+|||.+|+.+++..+.. +.+++|++||++|+.
T Consensus 440 ~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~----g~qvlvLvPT~~LA~ 514 (926)
T TIGR00580 440 WQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD----GKQVAVLVPTTLLAQ 514 (926)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh----CCeEEEEeCcHHHHH
Confidence 34444455888 69999999999998755443 589999999999999999999887754 358999999999999
Q ss_pred HHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhcc-CCcEEEeCChhHHHhhhcCCCcc
Q 011620 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 116 q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~v~T~~~l~~~l~~~~~~~ 194 (481)
|+++.+.+++...++++..+.+.....+... ....+.. .++|+|+||..+ . ..+.
T Consensus 515 Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~------------------~~~~l~~g~~dIVIGTp~ll----~--~~v~ 570 (926)
T TIGR00580 515 QHFETFKERFANFPVTIELLSRFRSAKEQNE------------------ILKELASGKIDILIGTHKLL----Q--KDVK 570 (926)
T ss_pred HHHHHHHHHhccCCcEEEEEeccccHHHHHH------------------HHHHHHcCCceEEEchHHHh----h--CCCC
Confidence 9999999988877889988888765443321 1122333 489999999533 2 2356
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeE
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (481)
+.++++||+||+|++.... ...+.... ...+++++||
T Consensus 571 f~~L~llVIDEahrfgv~~-----~~~L~~~~--------------------------------------~~~~vL~~SA 607 (926)
T TIGR00580 571 FKDLGLLIIDEEQRFGVKQ-----KEKLKELR--------------------------------------TSVDVLTLSA 607 (926)
T ss_pred cccCCEEEeecccccchhH-----HHHHHhcC--------------------------------------CCCCEEEEec
Confidence 7889999999999863221 11221111 2237999999
Q ss_pred EEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHH-HHH-hcCCCcEEEEcCCchhHHHHHHHH
Q 011620 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVA-LLQ-SLGEEKCIVFTSSVESTHRLCTLL 352 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~-~l~-~~~~~~~lVf~~s~~~~~~l~~~l 352 (481)
|+.+...........++..+...... ...+..+..... ...+.. +.. ...+++++|||++++.++.+++.|
T Consensus 608 Tpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~~----~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L 680 (926)
T TIGR00580 608 TPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEYD----PELVREAIRRELLRGGQVFYVHNRIESIEKLATQL 680 (926)
T ss_pred CCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEecC----HHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHH
Confidence 98665544444444444444322211 111222222111 111111 111 224678999999999999999999
Q ss_pred hhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCC-ChhhHHHHHhhhhcCCC
Q 011620 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAGQ 431 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~-s~~~~~Q~~GR~~R~~~ 431 (481)
++.. .+.++..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|. ...+|.||+||+||.|+
T Consensus 681 ~~~~-p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~ 759 (926)
T TIGR00580 681 RELV-PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKK 759 (926)
T ss_pred HHhC-CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCC
Confidence 8752 237899999999999999999999999999999999999999999999999998865 56789999999999999
Q ss_pred CCcEEEEEeCC
Q 011620 432 LGRCFTLLHKD 442 (481)
Q Consensus 432 ~g~~i~~~~~~ 442 (481)
.|.|++++...
T Consensus 760 ~g~aill~~~~ 770 (926)
T TIGR00580 760 KAYAYLLYPHQ 770 (926)
T ss_pred CeEEEEEECCc
Confidence 99999998654
No 46
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.6e-39 Score=332.13 Aligned_cols=333 Identities=20% Similarity=0.233 Sum_probs=238.6
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
+++.+++.+.+.+|. |+++|.++++.+.+ ++++++++|||+|||+++.++++..+.. +.+++|++|+++|+
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~----~~nvlv~apTGSGKTl~a~lail~~l~~----~~k~v~i~P~raLa 78 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQLRK----GENVIVSVPTAAGKTLIAYSAIYETFLA----GLKSIYIVPLRSLA 78 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHHhc----CCcEEEECCCCchHHHHHHHHHHHHHHh----CCcEEEEechHHHH
Confidence 999999999999985 99999999998765 8999999999999999999998887754 34799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcc
Q 011620 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~ 194 (481)
.|+++++.++. ..|..+....|+...... ....++|+|+||+++..++.+.. ..
T Consensus 79 ~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~------------------------~~~~~dIiv~Tpek~~~l~~~~~-~~ 132 (674)
T PRK01172 79 MEKYEELSRLR-SLGMRVKISIGDYDDPPD------------------------FIKRYDVVILTSEKADSLIHHDP-YI 132 (674)
T ss_pred HHHHHHHHHHh-hcCCeEEEEeCCCCCChh------------------------hhccCCEEEECHHHHHHHHhCCh-hH
Confidence 99999998864 357888888876543221 11346999999999988887643 44
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeE
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (481)
+.++++||+||+|.+.+..++..++.++....... +..+++++||
T Consensus 133 l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~-----------------------------------~~~riI~lSA 177 (674)
T PRK01172 133 INDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN-----------------------------------PDARILALSA 177 (674)
T ss_pred HhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC-----------------------------------cCCcEEEEeC
Confidence 77899999999999988777777777766553221 2238999999
Q ss_pred EEecCcccccccccCCceeeecCCccccCCcccc---cceecccCCCcHHHHHHHHHh--cCCCcEEEEcCCchhHHHHH
Q 011620 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE---SYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLC 349 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~ 349 (481)
|+++. ..+.. ++...... .......+...+. ........... ..+..++.. ..++++||||++++.++.++
T Consensus 178 Tl~n~-~~la~-wl~~~~~~-~~~r~vpl~~~i~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a 253 (674)
T PRK01172 178 TVSNA-NELAQ-WLNASLIK-SNFRPVPLKLGILYRKRLILDGYERSQ-VDINSLIKETVNDGGQVLVFVSSRKNAEDYA 253 (674)
T ss_pred ccCCH-HHHHH-HhCCCccC-CCCCCCCeEEEEEecCeeeeccccccc-ccHHHHHHHHHhCCCcEEEEeccHHHHHHHH
Confidence 98643 22222 11111110 0000000000000 00000000011 112222322 24679999999999999999
Q ss_pred HHHhhcCCc----------------------ceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEE
Q 011620 350 TLLNHFGEL----------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407 (481)
Q Consensus 350 ~~l~~~~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~v 407 (481)
..|.+.... ...+.++|++++..+|..+++.|++|..+|||||++++.|+|+|.. .|
T Consensus 254 ~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~-~V 332 (674)
T PRK01172 254 EMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPAR-LV 332 (674)
T ss_pred HHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcce-EE
Confidence 988654210 1247889999999999999999999999999999999999999975 45
Q ss_pred EEecC---------CCChhhHHHHHhhhhcCCC--CCcEEEEEeCC
Q 011620 408 VNYDK---------PAYIKTYIHRAGRTARAGQ--LGRCFTLLHKD 442 (481)
Q Consensus 408 I~~~~---------p~s~~~~~Q~~GR~~R~~~--~g~~i~~~~~~ 442 (481)
|+.+. |.+..+|.||+||+||.|. .|.+++++...
T Consensus 333 II~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 333 IVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred EEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 55442 4578899999999999885 45677776543
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2e-38 Score=322.67 Aligned_cols=326 Identities=18% Similarity=0.213 Sum_probs=233.8
Q ss_pred HHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCC--CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~--~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
..+.+....++| +|++.|.+|++.+......+ .+.+++||||||||.+|+++++..+.. +.+++|++||++|+
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~----g~q~lilaPT~~LA 323 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA----GYQAALMAPTEILA 323 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEeccHHHH
Confidence 444455566888 79999999999998754433 478999999999999999999887753 56899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhcc-CCcEEEeCChhHHHhhhcCCCc
Q 011620 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
.|+++.+++++...|+++..++|+....+.... +..+.. .++|+|+||..+.. ..
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~------------------~~~l~~g~~~IvVgT~~ll~~------~v 379 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREI------------------LEAIASGEADIVIGTHALIQD------DV 379 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHH------------------HHHHhCCCCCEEEchHHHhcc------cc
Confidence 999999999998889999999999875544221 122333 48999999977632 24
Q ss_pred ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEe
Q 011620 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (481)
.+.+++++|+||+|++....... +... . ...+++++|
T Consensus 380 ~~~~l~lvVIDE~Hrfg~~qr~~----l~~~-~--------------------------------------~~~~iL~~S 416 (681)
T PRK10917 380 EFHNLGLVIIDEQHRFGVEQRLA----LREK-G--------------------------------------ENPHVLVMT 416 (681)
T ss_pred hhcccceEEEechhhhhHHHHHH----HHhc-C--------------------------------------CCCCEEEEe
Confidence 46789999999999874332211 1110 0 113789999
Q ss_pred EEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHh--cCCCcEEEEcCCch--------
Q 011620 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE-------- 343 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~-------- 343 (481)
||+.+...........+...+..... -...+..... ...+...+.+.+.. ..+.+++|||+.++
T Consensus 417 ATp~prtl~~~~~g~~~~s~i~~~p~---~r~~i~~~~~---~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~ 490 (681)
T PRK10917 417 ATPIPRTLAMTAYGDLDVSVIDELPP---GRKPITTVVI---PDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQ 490 (681)
T ss_pred CCCCHHHHHHHHcCCCceEEEecCCC---CCCCcEEEEe---CcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHH
Confidence 99865433322211112111111111 0111211111 12222223333322 24679999999654
Q ss_pred hHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCC-ChhhHHHH
Q 011620 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHR 422 (481)
Q Consensus 344 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~-s~~~~~Q~ 422 (481)
.++.+++.|.+... +..+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|. ....+.|+
T Consensus 491 ~~~~~~~~L~~~~~-~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~ 569 (681)
T PRK10917 491 SAEETYEELQEAFP-ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQL 569 (681)
T ss_pred HHHHHHHHHHHHCC-CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHH
Confidence 45566777765521 26899999999999999999999999999999999999999999999999999986 47889999
Q ss_pred HhhhhcCCCCCcEEEEEeC
Q 011620 423 AGRTARAGQLGRCFTLLHK 441 (481)
Q Consensus 423 ~GR~~R~~~~g~~i~~~~~ 441 (481)
.||+||.|..|.|++++..
T Consensus 570 ~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 570 RGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred hhcccCCCCceEEEEEECC
Confidence 9999999999999999953
No 48
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.8e-38 Score=288.67 Aligned_cols=325 Identities=20% Similarity=0.258 Sum_probs=235.9
Q ss_pred CCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011620 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (481)
..++|.||......++ .++.+|+.|||.|||+++++.+..++...+ + ++|+++||+.|+.|.++.|.++...
T Consensus 13 ~ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWFG--G-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhcC--C-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 3589999999887777 469999999999999999999998887653 3 7999999999999999999999876
Q ss_pred cCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecch
Q 011620 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H 207 (481)
..-.+..+.|.....+.... ....+|+|+||+.+.+.+.. +.+++.++.+|||||||
T Consensus 85 p~~~i~~ltGev~p~~R~~~----------------------w~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAH 141 (542)
T COG1111 85 PEDEIAALTGEVRPEEREEL----------------------WAKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAH 141 (542)
T ss_pred ChhheeeecCCCChHHHHHH----------------------HhhCCEEEeccHHHHhHHhc-CccChHHceEEEechhh
Confidence 66678889998876655322 23458999999999999988 55889999999999999
Q ss_pred hhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccc--
Q 011620 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-- 285 (481)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~-- 285 (481)
+...+..+-.+...+...+ +.+.++++||||..+......
T Consensus 142 RAvGnyAYv~Va~~y~~~~--------------------------------------k~~~ilgLTASPGs~~ekI~eV~ 183 (542)
T COG1111 142 RAVGNYAYVFVAKEYLRSA--------------------------------------KNPLILGLTASPGSDLEKIQEVV 183 (542)
T ss_pred hccCcchHHHHHHHHHHhc--------------------------------------cCceEEEEecCCCCCHHHHHHHH
Confidence 9766654444443333222 223678888888765332111
Q ss_pred -cccCCceeeecC---------------------------------------------------Cc---cccC-------
Q 011620 286 -LDLHHPLFLTTG---------------------------------------------------ET---RYKL------- 303 (481)
Q Consensus 286 -~~~~~~~~~~~~---------------------------------------------------~~---~~~~------- 303 (481)
...-..+.+... .. ...+
T Consensus 184 ~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~ 263 (542)
T COG1111 184 ENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIR 263 (542)
T ss_pred HhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHH
Confidence 000000000000 00 0000
Q ss_pred ---Cccccc--c-----------------------------------------------------------------eec
Q 011620 304 ---PERLES--Y-----------------------------------------------------------------KLI 313 (481)
Q Consensus 304 ---~~~~~~--~-----------------------------------------------------------------~~~ 313 (481)
...... + ...
T Consensus 264 ~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~ 343 (542)
T COG1111 264 LIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADES 343 (542)
T ss_pred HHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccc
Confidence 000000 0 000
Q ss_pred ccCCCcHHHHHHHHH----hcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEc-------cCccChHHHHHHHHHHh
Q 011620 314 CESKLKPLYLVALLQ----SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY-------SGLQRQSVRSKTLKAFR 382 (481)
Q Consensus 314 ~~~~~k~~~l~~~l~----~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~-------~~~~~~~~r~~~~~~f~ 382 (481)
.-...|...+.+++. ...+.++|||++.+++|+.+.+.|.+.+..-. +.++ ..||++.++.+++++|+
T Consensus 344 ~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr 422 (542)
T COG1111 344 GVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR-VRFIGQASREGDKGMSQKEQKEIIDQFR 422 (542)
T ss_pred cCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce-eEEeeccccccccccCHHHHHHHHHHHh
Confidence 001223333333333 22456999999999999999999998863221 1222 35899999999999999
Q ss_pred cCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCc
Q 011620 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (481)
Q Consensus 383 ~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 443 (481)
+|+++|||||++.++|+|+|.++.||+|++..|...++||.||+||. +.|.+++++..+.
T Consensus 423 ~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 423 KGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred cCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 99999999999999999999999999999999999999999999997 7899999999873
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.4e-38 Score=319.11 Aligned_cols=328 Identities=17% Similarity=0.224 Sum_probs=233.8
Q ss_pred HHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCC--CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~--~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
..+.+.+..++| +|++.|.+|++.++...... .+.++++|||||||.+|+++++..+.. +.+++|++||++|+
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~----g~qvlilaPT~~LA 297 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA----GYQVALMAPTEILA 297 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc----CCcEEEECCHHHHH
Confidence 445566777898 89999999999998754333 368999999999999999998887653 55899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhc-cCCcEEEeCChhHHHhhhcCCCc
Q 011620 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
.|+++.+.+++...|+++..++|+....+... .+..+. ..++|+|+||..+.. .+
T Consensus 298 ~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~------------------~~~~i~~g~~~IiVgT~~ll~~------~~ 353 (630)
T TIGR00643 298 EQHYNSLRNLLAPLGIEVALLTGSLKGKRRKE------------------LLETIASGQIHLVVGTHALIQE------KV 353 (630)
T ss_pred HHHHHHHHHHhcccCcEEEEEecCCCHHHHHH------------------HHHHHhCCCCCEEEecHHHHhc------cc
Confidence 99999999999888999999999876554321 112232 357999999987643 24
Q ss_pred ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEe
Q 011620 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (481)
.+.++++||+||+|++....... +....... ...+++++|
T Consensus 354 ~~~~l~lvVIDEaH~fg~~qr~~----l~~~~~~~------------------------------------~~~~~l~~S 393 (630)
T TIGR00643 354 EFKRLALVIIDEQHRFGVEQRKK----LREKGQGG------------------------------------FTPHVLVMS 393 (630)
T ss_pred cccccceEEEechhhccHHHHHH----HHHhcccC------------------------------------CCCCEEEEe
Confidence 56789999999999874332211 11111000 123789999
Q ss_pred EEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHh--cCCCcEEEEcCCch--------
Q 011620 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE-------- 343 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~-------- 343 (481)
||+.+...........+...+..... ....+.... .....+ ..+...+.. ..+.+++|||+..+
T Consensus 394 ATp~prtl~l~~~~~l~~~~i~~~p~---~r~~i~~~~--~~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~ 467 (630)
T TIGR00643 394 ATPIPRTLALTVYGDLDTSIIDELPP---GRKPITTVL--IKHDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLK 467 (630)
T ss_pred CCCCcHHHHHHhcCCcceeeeccCCC---CCCceEEEE--eCcchH-HHHHHHHHHHHHhCCcEEEEEccccccccchHH
Confidence 99865433221111111111110000 011111111 111222 333333332 24678999998763
Q ss_pred hHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCC-ChhhHHHH
Q 011620 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHR 422 (481)
Q Consensus 344 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~-s~~~~~Q~ 422 (481)
.++.+++.|.+.. .+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|. +...+.|+
T Consensus 468 ~a~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~ 546 (630)
T TIGR00643 468 AAEALYERLKKAF-PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQL 546 (630)
T ss_pred HHHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHH
Confidence 4566777776542 347899999999999999999999999999999999999999999999999999886 57889999
Q ss_pred HhhhhcCCCCCcEEEEEe
Q 011620 423 AGRTARAGQLGRCFTLLH 440 (481)
Q Consensus 423 ~GR~~R~~~~g~~i~~~~ 440 (481)
+||+||.|..|.|++++.
T Consensus 547 ~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 547 RGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred hhhcccCCCCcEEEEEEC
Confidence 999999999999999993
No 50
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-38 Score=306.15 Aligned_cols=341 Identities=22% Similarity=0.299 Sum_probs=256.3
Q ss_pred HHHHHHH-cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 011620 39 LKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 39 ~~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~ 117 (481)
+...|++ ||+..+|+-|.++|..+++ ++++++.+|||.||+++|.+|++-. .| -+|||.|..+|...+
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPAll~------~G-~TLVVSPLiSLM~DQ 73 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPALLL------EG-LTLVVSPLISLMKDQ 73 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHHHhc------CC-CEEEECchHHHHHHH
Confidence 3455666 7999999999999999987 8999999999999999999998732 23 599999999999988
Q ss_pred HHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhc-cCCcEEEeCChhHHHhhhcCCCcccC
Q 011620 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLE 196 (481)
Q Consensus 118 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~~~~~~ 196 (481)
.+.+... |+.+..+.+.....+.. .+++.+. ...+++.-+||++..-... ..+.-.
T Consensus 74 V~~l~~~----Gi~A~~lnS~l~~~e~~------------------~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~ 130 (590)
T COG0514 74 VDQLEAA----GIRAAYLNSTLSREERQ------------------QVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRL 130 (590)
T ss_pred HHHHHHc----CceeehhhcccCHHHHH------------------HHHHHHhcCceeEEEECchhhcChHHH-HHHHhC
Confidence 8888877 78888888886655542 2222333 3479999999998543211 112234
Q ss_pred CccEEEEecchhhhhHh--HHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeE
Q 011620 197 HLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 197 ~~~~iViDE~H~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (481)
.+.++||||||.+...+ |+.....+-..... ++..+++.+||
T Consensus 131 ~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~------------------------------------~~~~p~~AlTA 174 (590)
T COG0514 131 PISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG------------------------------------LPNPPVLALTA 174 (590)
T ss_pred CCceEEechHHHHhhcCCccCHhHHHHHHHHhh------------------------------------CCCCCEEEEeC
Confidence 57899999999987664 44444433332221 13447899999
Q ss_pred EEecCccccc--ccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHH
Q 011620 275 TLTQDPNKLA--QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (481)
Q Consensus 275 t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l 352 (481)
|-++....-. ...+..+..+......+++...+.... ....+...+.. ......+..||||.|++.++.+++.|
T Consensus 175 TA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~---~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L 250 (590)
T COG0514 175 TATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKG---EPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWL 250 (590)
T ss_pred CCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcc---cHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHH
Confidence 9876655433 344445444444444333222111111 11122222222 12445667999999999999999999
Q ss_pred hhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCC
Q 011620 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~ 432 (481)
.+.+ +.+..+|++|+..+|..+.++|..++.+|+|||..+++|||-|++.+||||+.|.|...|.|-+|||||+|.+
T Consensus 251 ~~~g---~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~ 327 (590)
T COG0514 251 RKNG---ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLP 327 (590)
T ss_pred HHCC---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCc
Confidence 9886 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCcchhhhhhcccccc
Q 011620 433 GRCFTLLHKDEVCLVGCLTPLLLC 456 (481)
Q Consensus 433 g~~i~~~~~~~~~~~~~i~~~~~~ 456 (481)
..|++++++.|......+.+.-..
T Consensus 328 a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 328 AEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred ceEEEeeccccHHHHHHHHHhhcc
Confidence 999999999998888877666544
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.6e-37 Score=326.57 Aligned_cols=329 Identities=17% Similarity=0.180 Sum_probs=241.5
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCC--CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~--~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~ 112 (481)
-.++..+....++| .|++.|.+|++.+.....+. .+.+++++||+|||.+++.++...+. .+.+++|++||++
T Consensus 586 ~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~----~g~qvlvLvPT~e 660 (1147)
T PRK10689 586 DREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE----NHKQVAVLVPTTL 660 (1147)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----cCCeEEEEeCcHH
Confidence 34566777788999 89999999999988743332 78999999999999999887766553 3558999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhc-cCCcEEEeCChhHHHhhhcCC
Q 011620 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATR 191 (481)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~ 191 (481)
|+.|+++.+.......++++..+.+.....++...+ ..+. ..++|+|+||+.+. .
T Consensus 661 LA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il------------------~~l~~g~~dIVVgTp~lL~------~ 716 (1147)
T PRK10689 661 LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQIL------------------AEAAEGKIDILIGTHKLLQ------S 716 (1147)
T ss_pred HHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHH------------------HHHHhCCCCEEEECHHHHh------C
Confidence 999999999987766678888888877655543221 1222 35799999997442 2
Q ss_pred CcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEE
Q 011620 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (481)
Q Consensus 192 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (481)
.+.+.+++++|+||+|++.... ...+..+. ...++++
T Consensus 717 ~v~~~~L~lLVIDEahrfG~~~-----~e~lk~l~--------------------------------------~~~qvLl 753 (1147)
T PRK10689 717 DVKWKDLGLLIVDEEHRFGVRH-----KERIKAMR--------------------------------------ADVDILT 753 (1147)
T ss_pred CCCHhhCCEEEEechhhcchhH-----HHHHHhcC--------------------------------------CCCcEEE
Confidence 3456789999999999973221 11122111 2338999
Q ss_pred EeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCC-CcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHH
Q 011620 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350 (481)
Q Consensus 272 ~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~ 350 (481)
+|||+.+....+...++.++..+...... ...+..+....... .+...+.++ ..+++++|||++++.++.+++
T Consensus 754 ~SATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~~~~~k~~il~el---~r~gqv~vf~n~i~~ie~la~ 827 (1147)
T PRK10689 754 LTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYDSLVVREAILREI---LRGGQVYYLYNDVENIQKAAE 827 (1147)
T ss_pred EcCCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecCcHHHHHHHHHHH---hcCCeEEEEECCHHHHHHHHH
Confidence 99998776666555566666655432221 11122222221111 111112222 246789999999999999999
Q ss_pred HHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCC-CChhhHHHHHhhhhcC
Q 011620 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARA 429 (481)
Q Consensus 351 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p-~s~~~~~Q~~GR~~R~ 429 (481)
.|.+.. .+.++..+||+|++.+|.++++.|++|+.+|||||+++++|+|+|++++||+.+.+ .+...|.||+||+||.
T Consensus 828 ~L~~~~-p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~ 906 (1147)
T PRK10689 828 RLAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 (1147)
T ss_pred HHHHhC-CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCC
Confidence 998762 12678899999999999999999999999999999999999999999999976543 3567899999999999
Q ss_pred CCCCcEEEEEeCC
Q 011620 430 GQLGRCFTLLHKD 442 (481)
Q Consensus 430 ~~~g~~i~~~~~~ 442 (481)
|+.|.|++++...
T Consensus 907 g~~g~a~ll~~~~ 919 (1147)
T PRK10689 907 HHQAYAWLLTPHP 919 (1147)
T ss_pred CCceEEEEEeCCC
Confidence 9999999888543
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.6e-37 Score=327.98 Aligned_cols=304 Identities=21% Similarity=0.297 Sum_probs=214.6
Q ss_pred EECCCCchHHHHhHHHHHHHHHhhc---------cCCccEEEEcccHHHHHHHHHHHHHhc------------cccCceE
Q 011620 74 INSPTGSGKTLSYALPIVQTLSNRA---------VRCLRALVVLPTRDLALQVKDVFAAIA------------PAVGLSV 132 (481)
Q Consensus 74 v~~~tGsGKT~~~~~~i~~~l~~~~---------~~~~~~lil~P~~~L~~q~~~~~~~~~------------~~~~~~v 132 (481)
|++|||||||++|.+|+++.+.... .++.++|||+|+++|+.|+.+.++... ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999998886532 235789999999999999999886421 1247889
Q ss_pred EEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhH
Q 011620 133 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212 (481)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~ 212 (481)
...+|+....+.... +.++++|+|+||++|..++.+.....++++++|||||+|.+.+.
T Consensus 81 ~vrtGDt~~~eR~rl---------------------l~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~ 139 (1490)
T PRK09751 81 GIRTGDTPAQERSKL---------------------TRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGS 139 (1490)
T ss_pred EEEECCCCHHHHHHH---------------------hcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhccc
Confidence 999999877665322 33568999999999998876533345889999999999999877
Q ss_pred hHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccccccc-ccCCc
Q 011620 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL-DLHHP 291 (481)
Q Consensus 213 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~-~~~~~ 291 (481)
.++..+...+..+..... ...|+|++|||+.+. ...... ....+
T Consensus 140 kRG~~Lel~LeRL~~l~~----------------------------------~~~QrIgLSATI~n~-eevA~~L~g~~p 184 (1490)
T PRK09751 140 KRGAHLALSLERLDALLH----------------------------------TSAQRIGLSATVRSA-SDVAAFLGGDRP 184 (1490)
T ss_pred ccccHHHHHHHHHHHhCC----------------------------------CCCeEEEEEeeCCCH-HHHHHHhcCCCC
Confidence 666665555554432111 123899999999753 333322 22223
Q ss_pred eeeecCCccccCCcccccceecccCC--------------------C-cHHHHHHHHHh-cCCCcEEEEcCCchhHHHHH
Q 011620 292 LFLTTGETRYKLPERLESYKLICESK--------------------L-KPLYLVALLQS-LGEEKCIVFTSSVESTHRLC 349 (481)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-k~~~l~~~l~~-~~~~~~lVf~~s~~~~~~l~ 349 (481)
..+......... .+.. ....... . .......++.. ..+.++||||||+..++.++
T Consensus 185 v~Iv~~~~~r~~--~l~v-~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La 261 (1490)
T PRK09751 185 VTVVNPPAMRHP--QIRI-VVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLT 261 (1490)
T ss_pred EEEECCCCCccc--ceEE-EEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHH
Confidence 333211111000 0110 0000000 0 00111122222 24578999999999999999
Q ss_pred HHHhhcCCc------------------------------ceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccC
Q 011620 350 TLLNHFGEL------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399 (481)
Q Consensus 350 ~~l~~~~~~------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gi 399 (481)
..|.+.... ...+..+||+++..+|..+++.|++|+.++||||++++.||
T Consensus 262 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGI 341 (1490)
T PRK09751 262 ARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGI 341 (1490)
T ss_pred HHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccC
Confidence 999764210 12356899999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCCCChhhHHHHHhhhhcC-CCCCcEE
Q 011620 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARA-GQLGRCF 436 (481)
Q Consensus 400 di~~~~~vI~~~~p~s~~~~~Q~~GR~~R~-~~~g~~i 436 (481)
|++.+++||+++.|.+...|+||+||+||. |..+.++
T Consensus 342 DIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 342 DMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 999999999999999999999999999995 2233444
No 53
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.5e-36 Score=303.72 Aligned_cols=324 Identities=20% Similarity=0.210 Sum_probs=224.2
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCC-CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~-~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.||. |+|+|.++++.++. |+ ++++.+|||||||.++..+++.. ..+.....++++++|+++|+.|+++.+.++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~----G~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~ 85 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVA----GQPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEEAEKI 85 (844)
T ss_pred hCCC-CCHHHHHHHHHHHc----CCCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHHHHHH
Confidence 4886 99999999999886 76 57888999999998654333322 121122224555779999999999999988
Q ss_pred cccc-----------------------CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCCh
Q 011620 125 APAV-----------------------GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (481)
Q Consensus 125 ~~~~-----------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~ 181 (481)
++.. ++++..++|+.....+.. .+..+++|+|+|++
T Consensus 86 ~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~---------------------~l~~~p~IIVgT~D 144 (844)
T TIGR02621 86 GERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWM---------------------LDPHRPAVIVGTVD 144 (844)
T ss_pred HHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHH---------------------hcCCCCcEEEECHH
Confidence 7654 477888899887665543 35567899999976
Q ss_pred hHHHhhhc-C-------CCc---ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhh
Q 011620 182 RLMDHINA-T-------RGF---TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250 (481)
Q Consensus 182 ~l~~~l~~-~-------~~~---~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
.+.+-... . ..+ .+.+..++|+|||| ++.+|...+..|+........
T Consensus 145 ~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~-------------------- 202 (844)
T TIGR02621 145 MIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD-------------------- 202 (844)
T ss_pred HHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc--------------------
Confidence 65332210 0 001 15778999999999 577888888888875421100
Q ss_pred hhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHH---
Q 011620 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL--- 327 (481)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l--- 327 (481)
....|+++||||++............++..+....... ....+.++ .......+...+...+
T Consensus 203 -------------~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l-~a~ki~q~-v~v~~e~Kl~~lv~~L~~l 267 (844)
T TIGR02621 203 -------------FLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRL-AAKKIVKL-VPPSDEKFLSTMVKELNLL 267 (844)
T ss_pred -------------cccceEEEEecCCCccHHHHHHHHccCCceeecccccc-cccceEEE-EecChHHHHHHHHHHHHHH
Confidence 01248999999998766655544544444333322211 11222222 2222222332222221
Q ss_pred HhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHH-----HHHHHHhc----CC-------ceEEEe
Q 011620 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS-----KTLKAFRE----GK-------IQVLVS 391 (481)
Q Consensus 328 ~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----g~-------~~vLi~ 391 (481)
....++++||||+++..++.+++.|.+.+ + ..+||++++.+|. .+++.|++ |. ..||||
T Consensus 268 l~e~g~~vLVF~NTv~~Aq~L~~~L~~~g---~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVA 342 (844)
T TIGR02621 268 MKDSGGAILVFCRTVKHVRKVFAKLPKEK---F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVC 342 (844)
T ss_pred HhhCCCcEEEEECCHHHHHHHHHHHHhcC---C--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEec
Confidence 22346789999999999999999998765 3 7899999999999 78899987 43 679999
Q ss_pred cccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCC-cEEEEEeC
Q 011620 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG-RCFTLLHK 441 (481)
Q Consensus 392 t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g-~~i~~~~~ 441 (481)
|+++++|+|++. ++||++..| ...|+||+||++|.|+.+ ..+.++..
T Consensus 343 TdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 343 TSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 999999999986 888887665 689999999999998754 44555544
No 54
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3.6e-37 Score=284.53 Aligned_cols=358 Identities=23% Similarity=0.268 Sum_probs=271.0
Q ss_pred CCCCCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHH
Q 011620 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (481)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~ 93 (481)
|.-........+..++++++ +++.+.+.++..|+..+.|.|.-|+.. .+.+|.|.+|.++|+||||++.-++-+..
T Consensus 181 yD~v~a~~~~~~r~~vdeLd-ipe~fk~~lk~~G~~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~ 256 (830)
T COG1202 181 YDEVTAETDEVERVPVDELD-IPEKFKRMLKREGIEELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPR 256 (830)
T ss_pred ceeeeccccccccccccccC-CcHHHHHHHHhcCcceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHH
Confidence 43333444555667788887 999999999999999999999988543 45679999999999999999998887877
Q ss_pred HHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCC
Q 011620 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (481)
Q Consensus 94 l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (481)
+... +.+.+|++|..+|++|-+++|+.-...+|+.+...+|-.......... .-.....+
T Consensus 257 ~l~~---g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv-----------------~~~t~~dA 316 (830)
T COG1202 257 LLSG---GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPV-----------------VVDTSPDA 316 (830)
T ss_pred HHhC---CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCcc-----------------ccCCCCCC
Confidence 7754 447999999999999999999887777899998888865443321000 00112347
Q ss_pred cEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhc
Q 011620 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253 (481)
Q Consensus 174 ~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (481)
||+|+||+-+-.++..+ -.+.++.+|||||+|.+-+...+..+.-++..++...
T Consensus 317 DIIVGTYEGiD~lLRtg--~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~------------------------ 370 (830)
T COG1202 317 DIIVGTYEGIDYLLRTG--KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF------------------------ 370 (830)
T ss_pred cEEEeechhHHHHHHcC--CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC------------------------
Confidence 99999999999888874 4578999999999999888777777777776665433
Q ss_pred cccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccc-cceecccCCCcHHHHHHHHHhc--
Q 011620 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE-SYKLICESKLKPLYLVALLQSL-- 330 (481)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~l~~~l~~~-- 330 (481)
+..|++.+|||..++ ..++.......+.+.... ..++ |........+|...+..+.+..
T Consensus 371 -----------~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~RP------VplErHlvf~~~e~eK~~ii~~L~k~E~~ 432 (830)
T COG1202 371 -----------PGAQFIYLSATVGNP-EELAKKLGAKLVLYDERP------VPLERHLVFARNESEKWDIIARLVKREFS 432 (830)
T ss_pred -----------CCCeEEEEEeecCCh-HHHHHHhCCeeEeecCCC------CChhHeeeeecCchHHHHHHHHHHHHHHh
Confidence 344999999999644 444443333333332211 1222 3333334566666666555421
Q ss_pred ------CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCC
Q 011620 331 ------GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404 (481)
Q Consensus 331 ------~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~ 404 (481)
-.+.+|||++|+..+..+++.|...| +++..+|++++..+|..+...|.+++..++|+|..++.|+|+|.
T Consensus 433 ~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG---~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPA- 508 (830)
T COG1202 433 TESSKGYRGQTIVFTYSRRRCHELADALTGKG---LKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPA- 508 (830)
T ss_pred hhhccCcCCceEEEecchhhHHHHHHHhhcCC---cccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCch-
Confidence 24689999999999999999999877 89999999999999999999999999999999999999999994
Q ss_pred CEEEEecCC-----CChhhHHHHHhhhhcCC--CCCcEEEEEeCCc
Q 011620 405 NNVVNYDKP-----AYIKTYIHRAGRTARAG--QLGRCFTLLHKDE 443 (481)
Q Consensus 405 ~~vI~~~~p-----~s~~~~~Q~~GR~~R~~--~~g~~i~~~~~~~ 443 (481)
+.||+-++. .|+.+|.|++||+||.+ ..|.+++++.++.
T Consensus 509 SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 509 SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 445543322 36899999999999965 4678888877653
No 55
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=3.1e-36 Score=297.53 Aligned_cols=308 Identities=17% Similarity=0.163 Sum_probs=210.3
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (481)
..||++|.+|+..++. +++.++++|||+|||.++...+ ..+... ...++||++||++|+.||.+.+.+++...
T Consensus 113 ~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~-~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLS-RYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred CCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHH-HHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 4899999999988886 7789999999999999876533 222222 23379999999999999999999987543
Q ss_pred CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh
Q 011620 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~ 208 (481)
...+..+.++.... ...+|+|+||+++..... ..+.++++||+||||+
T Consensus 186 ~~~~~~i~~g~~~~----------------------------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~ 233 (501)
T PHA02558 186 REAMHKIYSGTAKD----------------------------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHL 233 (501)
T ss_pred ccceeEEecCcccC----------------------------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhc
Confidence 34444444443211 234899999999876432 1356899999999999
Q ss_pred hhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccc-cc
Q 011620 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LD 287 (481)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~-~~ 287 (481)
+.+..+. .++..+.. ..+.+++|||+.+....... ..
T Consensus 234 ~~~~~~~----~il~~~~~--------------------------------------~~~~lGLTATp~~~~~~~~~~~~ 271 (501)
T PHA02558 234 FTGKSLT----SIITKLDN--------------------------------------CKFKFGLTGSLRDGKANILQYVG 271 (501)
T ss_pred ccchhHH----HHHHhhhc--------------------------------------cceEEEEeccCCCccccHHHHHH
Confidence 8765543 33332211 12679999998643221110 00
Q ss_pred cCCceeeecCC-----ccc----------------cCC----cccc-cceecccCCCcHHHHHHHHHh--cCCCcEEEEc
Q 011620 288 LHHPLFLTTGE-----TRY----------------KLP----ERLE-SYKLICESKLKPLYLVALLQS--LGEEKCIVFT 339 (481)
Q Consensus 288 ~~~~~~~~~~~-----~~~----------------~~~----~~~~-~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~ 339 (481)
.-.+....... ... ... ..+. .+........+...+..++.. ..+.+++|||
T Consensus 272 ~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~ 351 (501)
T PHA02558 272 LFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMF 351 (501)
T ss_pred hhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 11111111000 000 000 0000 000111122233333333322 2456899999
Q ss_pred CCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEec-ccccccCCCCCCCEEEEecCCCChhh
Q 011620 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIKT 418 (481)
Q Consensus 340 ~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t-~~l~~Gidi~~~~~vI~~~~p~s~~~ 418 (481)
.+.++++.+++.|.+.+ ..+..+||+++..+|..+++.|++|+..+||+| +.+++|+|+|++++||++.++.|...
T Consensus 352 ~~~~h~~~L~~~L~~~g---~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~ 428 (501)
T PHA02558 352 KYVEHGKPLYEMLKKVY---DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKII 428 (501)
T ss_pred EEHHHHHHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhh
Confidence 99999999999999876 789999999999999999999999998999998 89999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCcEEEEEe
Q 011620 419 YIHRAGRTARAGQLGRCFTLLH 440 (481)
Q Consensus 419 ~~Q~~GR~~R~~~~g~~i~~~~ 440 (481)
|+||+||++|.+..+....+++
T Consensus 429 ~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 429 VLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred hhhhhhccccCCCCCceEEEEE
Confidence 9999999999765554333333
No 56
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=7.9e-36 Score=301.09 Aligned_cols=337 Identities=25% Similarity=0.285 Sum_probs=246.9
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
+++.+.+.++..++.++.+.|+.++...+. +++|++|++|||+|||+++++++++.+..+ +.+++|++|+++|+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~---~~k~vYivPlkALa 89 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG---GGKVVYIVPLKALA 89 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc---CCcEEEEeChHHHH
Confidence 788888889999999999999999766554 379999999999999999999999998875 44799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcc
Q 011620 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~ 194 (481)
.+.++.++++ ...|++|...+|+....+. -..+++|+|+|||++-.+..+... .
T Consensus 90 ~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~------------------------~l~~~~ViVtT~EK~Dsl~R~~~~-~ 143 (766)
T COG1204 90 EEKYEEFSRL-EELGIRVGISTGDYDLDDE------------------------RLARYDVIVTTPEKLDSLTRKRPS-W 143 (766)
T ss_pred HHHHHHhhhH-HhcCCEEEEecCCcccchh------------------------hhccCCEEEEchHHhhHhhhcCcc-h
Confidence 9999999944 4469999999999875553 124569999999999999887554 5
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeE
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (481)
+..+++||+||+|.+.+...+..++.+...++.... ..+++.+||
T Consensus 144 ~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~-----------------------------------~~rivgLSA 188 (766)
T COG1204 144 IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE-----------------------------------LIRIVGLSA 188 (766)
T ss_pred hhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc-----------------------------------ceEEEEEee
Confidence 778999999999998887788888888887765432 248999999
Q ss_pred EEecCcccccccccCCce-eeecCCccccCCcccccceeccc----CCCcHHHHHHHH-Hh-cCCCcEEEEcCCchhHHH
Q 011620 275 TLTQDPNKLAQLDLHHPL-FLTTGETRYKLPERLESYKLICE----SKLKPLYLVALL-QS-LGEEKCIVFTSSVESTHR 347 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~k~~~l~~~l-~~-~~~~~~lVf~~s~~~~~~ 347 (481)
|+++-.+...+....... ...........+.....+..... +..........+ .. ..++.+||||+|+..+..
T Consensus 189 TlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~ 268 (766)
T COG1204 189 TLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEK 268 (766)
T ss_pred ecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHH
Confidence 996544433333322110 00000000011111111111111 111222222222 22 256799999999999999
Q ss_pred HHHHHhhc----CC------------------------------cceEEEEccCccChHHHHHHHHHHhcCCceEEEecc
Q 011620 348 LCTLLNHF----GE------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (481)
Q Consensus 348 l~~~l~~~----~~------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~ 393 (481)
.++.+... .. ....+.++|++++..+|..+.+.|+.|.++||+||+
T Consensus 269 ~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~Tp 348 (766)
T COG1204 269 TAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTP 348 (766)
T ss_pred HHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEech
Confidence 99888730 00 012478999999999999999999999999999999
Q ss_pred cccccCCCCCCCEEEE-----ec-----CCCChhhHHHHHhhhhcCCCC--CcEEEEE
Q 011620 394 AMTRGMDVEGVNNVVN-----YD-----KPAYIKTYIHRAGRTARAGQL--GRCFTLL 439 (481)
Q Consensus 394 ~l~~Gidi~~~~~vI~-----~~-----~p~s~~~~~Q~~GR~~R~~~~--g~~i~~~ 439 (481)
++..|+|+|. ..||+ |+ .+.+.-+++|++|||||.|-+ |.++++.
T Consensus 349 TLA~GVNLPA-~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 349 TLAAGVNLPA-RTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred HHhhhcCCcc-eEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 9999999994 44554 44 345577999999999997754 5666666
No 57
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=253.20 Aligned_cols=307 Identities=27% Similarity=0.409 Sum_probs=263.4
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
|.|++++++-..||..|...|.++++..+- |-+++..|-.|.|||.++.++.++.+.-- .....++++|.|++|+
T Consensus 49 lkpellraivdcgfehpsevqhecipqail----gmdvlcqaksgmgktavfvl~tlqqiepv-~g~vsvlvmchtrela 123 (387)
T KOG0329|consen 49 LKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQIEPV-DGQVSVLVMCHTRELA 123 (387)
T ss_pred cCHHHHHHHHhccCCCchHhhhhhhhHHhh----cchhheecccCCCceeeeehhhhhhcCCC-CCeEEEEEEeccHHHH
Confidence 999999999999999999999999998876 99999999999999999999888877543 3345699999999999
Q ss_pred HHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc
Q 011620 115 LQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 115 ~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
-|+.++..+|.+.. +.++..++|+....+.... +..-|+|+|+||+++..+... +.+
T Consensus 124 fqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~---------------------lk~~PhivVgTPGrilALvr~-k~l 181 (387)
T KOG0329|consen 124 FQISKEYERFSKYMPSVKVSVFFGGLFIKKDEEL---------------------LKNCPHIVVGTPGRILALVRN-RSL 181 (387)
T ss_pred HHHHHHHHHHHhhCCCceEEEEEcceeccccHHH---------------------HhCCCeEEEcCcHHHHHHHHh-ccC
Confidence 99999988887755 6899999999887665433 234579999999999999887 668
Q ss_pred ccCCccEEEEecchhhhhH-hHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEE
Q 011620 194 TLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (481)
+++++...|+|||+.+++. ...+.++.++..++.. .|+..+
T Consensus 182 ~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~--------------------------------------KQvmmf 223 (387)
T KOG0329|consen 182 NLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHE--------------------------------------KQVMMF 223 (387)
T ss_pred chhhcceeehhhHHHHHHHHHHHHHHHHHhhcCccc--------------------------------------ceeeee
Confidence 8999999999999987764 5667777787777533 388999
Q ss_pred eEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHH
Q 011620 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (481)
Q Consensus 273 Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l 352 (481)
|||++......+..++.+|..+....+........++++......+|...+.+++....-+.++||+.|+.. |
T Consensus 224 satlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l 296 (387)
T KOG0329|consen 224 SATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L 296 (387)
T ss_pred eeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhh-------h
Confidence 999999999999999999988877777767777788888888889999999999988888899999988664 1
Q ss_pred hhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCC
Q 011620 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~ 432 (481)
. | +.+ +|+|+.+++|+|+..++.+++||.|.+..+|.+|.||+||.|..
T Consensus 297 --------------------------~-f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtk 345 (387)
T KOG0329|consen 297 --------------------------S-F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 345 (387)
T ss_pred --------------------------h-h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccc
Confidence 0 2 223 89999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCcc
Q 011620 433 GRCFTLLHKDEV 444 (481)
Q Consensus 433 g~~i~~~~~~~~ 444 (481)
|.++.|++..+.
T Consensus 346 glaitfvs~e~d 357 (387)
T KOG0329|consen 346 GLAITFVSDEND 357 (387)
T ss_pred cceeehhcchhh
Confidence 999999986543
No 58
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.1e-34 Score=288.87 Aligned_cols=319 Identities=15% Similarity=0.129 Sum_probs=219.5
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHH---------hHHHHHHHHHh--hccCCccEEEEcccHHHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS---------YALPIVQTLSN--RAVRCLRALVVLPTRDLALQVK 118 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~---------~~~~i~~~l~~--~~~~~~~~lil~P~~~L~~q~~ 118 (481)
.+++.|.++..++++.+..++++++.|+||+|||.+ |+++.+..+.. ....+.++++++|+++|+.|+.
T Consensus 160 ~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 160 PLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred cCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHH
Confidence 578888888888887777899999999999999987 33333433321 1123457999999999999999
Q ss_pred HHHHHhccc---cCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCccc
Q 011620 119 DVFAAIAPA---VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195 (481)
Q Consensus 119 ~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~ 195 (481)
..+.+.... .+..+...+|+... .... ......+|+|+|+.... ..+
T Consensus 240 ~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~---------------------t~~k~~~Ilv~T~~L~l--------~~L 289 (675)
T PHA02653 240 ITLLKSLGFDEIDGSPISLKYGSIPD-ELIN---------------------TNPKPYGLVFSTHKLTL--------NKL 289 (675)
T ss_pred HHHHHHhCccccCCceEEEEECCcch-HHhh---------------------cccCCCCEEEEeCcccc--------ccc
Confidence 988765433 35677788887652 1100 01124589999965211 236
Q ss_pred CCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEE
Q 011620 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (481)
Q Consensus 196 ~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat 275 (481)
+++++||+||||.+.... +.+..++..... ...++++||||
T Consensus 290 ~~v~~VVIDEaHEr~~~~--DllL~llk~~~~-------------------------------------~~rq~ILmSAT 330 (675)
T PHA02653 290 FDYGTVIIDEVHEHDQIG--DIIIAVARKHID-------------------------------------KIRSLFLMTAT 330 (675)
T ss_pred ccCCEEEccccccCccch--hHHHHHHHHhhh-------------------------------------hcCEEEEEccC
Confidence 678999999999874443 222222221110 11279999999
Q ss_pred EecCcccccccccCCceeeecCCccccCCcccccceeccc----------CCCcHHHHHHHHHh---cCCCcEEEEcCCc
Q 011620 276 LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE----------SKLKPLYLVALLQS---LGEEKCIVFTSSV 342 (481)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~k~~~l~~~l~~---~~~~~~lVf~~s~ 342 (481)
++.+...+ ..++.++..+..... ....+++++.... ...+.. +...+.. ..++.+|||+++.
T Consensus 331 l~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~-~l~~L~~~~~~~~g~iLVFlpg~ 405 (675)
T PHA02653 331 LEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKN-IVTALKKYTPPKGSSGIVFVASV 405 (675)
T ss_pred CcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHH-HHHHHHHhhcccCCcEEEEECcH
Confidence 97666555 345555555543321 1112223322111 111222 2222322 2346899999999
Q ss_pred hhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHH-hcCCceEEEecccccccCCCCCCCEEEEec---CCC----
Q 011620 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF-REGKIQVLVSSDAMTRGMDVEGVNNVVNYD---KPA---- 414 (481)
Q Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~---~p~---- 414 (481)
.+++.+++.|.+.. .++.+..+||++++. ++.++.| ++|+.+|||||+++++|+|+|++++||+++ .|.
T Consensus 406 ~ei~~l~~~L~~~~-~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g 482 (675)
T PHA02653 406 SQCEEYKKYLEKRL-PIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGG 482 (675)
T ss_pred HHHHHHHHHHHhhc-CCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccC
Confidence 99999999998752 137899999999974 5667777 689999999999999999999999999998 554
Q ss_pred -----ChhhHHHHHhhhhcCCCCCcEEEEEeCCcchh
Q 011620 415 -----YIKTYIHRAGRTARAGQLGRCFTLLHKDEVCL 446 (481)
Q Consensus 415 -----s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~ 446 (481)
|.+.|.||+||+||. .+|.|+.+++..+...
T Consensus 483 ~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 483 KEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKP 518 (675)
T ss_pred cccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHH
Confidence 788999999999999 7899999999877543
No 59
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3e-34 Score=284.44 Aligned_cols=314 Identities=18% Similarity=0.184 Sum_probs=211.1
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
.+||||.+|+..++... ..++.+|++|||+|||++++..+.. + +.++||+||+..|+.||.++|.+++....
T Consensus 255 ~LRpYQ~eAl~~~~~~g-r~r~GIIvLPtGaGKTlvai~aa~~-l------~k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVTAACT-V------KKSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred CcCHHHHHHHHHHHhcC-CCCCcEEEeCCCCChHHHHHHHHHH-h------CCCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 59999999999887421 1257899999999999998765542 2 12599999999999999999999865444
Q ss_pred ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcC-------CCcccCCccEEE
Q 011620 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-------RGFTLEHLCYLV 202 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~-------~~~~~~~~~~iV 202 (481)
..+..+.|+.... ......|+|+|++++.....+. ..+.-..+++||
T Consensus 327 ~~I~~~tg~~k~~--------------------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII 380 (732)
T TIGR00603 327 SQICRFTSDAKER--------------------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLIL 380 (732)
T ss_pred ceEEEEecCcccc--------------------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEE
Confidence 5666666543211 0122489999999886432221 112234688999
Q ss_pred EecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccc
Q 011620 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (481)
Q Consensus 203 iDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~ 282 (481)
+||||++....+...+ ..+.. ...+++||||...-..
T Consensus 381 ~DEvH~lpA~~fr~il----~~l~a---------------------------------------~~RLGLTATP~ReD~~ 417 (732)
T TIGR00603 381 LDEVHVVPAAMFRRVL----TIVQA---------------------------------------HCKLGLTATLVREDDK 417 (732)
T ss_pred EEccccccHHHHHHHH----HhcCc---------------------------------------CcEEEEeecCcccCCc
Confidence 9999998766554433 22211 1468888998643222
Q ss_pred ccc-cccCCceeeecCC-----ccccCCccc------------ccc---------eecccCCCcHHHHHHHHHhc--CCC
Q 011620 283 LAQ-LDLHHPLFLTTGE-----TRYKLPERL------------ESY---------KLICESKLKPLYLVALLQSL--GEE 333 (481)
Q Consensus 283 ~~~-~~~~~~~~~~~~~-----~~~~~~~~~------------~~~---------~~~~~~~~k~~~l~~~l~~~--~~~ 333 (481)
... ..+-.|..+...- ..+..+... ..+ ........|...+..+++.. .+.
T Consensus 418 ~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~ 497 (732)
T TIGR00603 418 ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGD 497 (732)
T ss_pred hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCC
Confidence 111 1111222221110 000000000 000 00111223444444455544 677
Q ss_pred cEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcC-CceEEEecccccccCCCCCCCEEEEecC
Q 011620 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVNNVVNYDK 412 (481)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLi~t~~l~~Gidi~~~~~vI~~~~ 412 (481)
++||||.+...++.+++.|. +..+||+++..+|..+++.|+.| ..++||+|+++++|+|+|++++||+++.
T Consensus 498 kiLVF~~~~~~l~~~a~~L~--------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~ 569 (732)
T TIGR00603 498 KIIVFSDNVFALKEYAIKLG--------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISS 569 (732)
T ss_pred eEEEEeCCHHHHHHHHHHcC--------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCC
Confidence 99999999999998888772 34589999999999999999975 7899999999999999999999999998
Q ss_pred C-CChhhHHHHHhhhhcCCCCCcE-------EEEEeCCcchhhh
Q 011620 413 P-AYIKTYIHRAGRTARAGQLGRC-------FTLLHKDEVCLVG 448 (481)
Q Consensus 413 p-~s~~~~~Q~~GR~~R~~~~g~~-------i~~~~~~~~~~~~ 448 (481)
| .|...|+||+||++|.+..|.+ +.+++.+..+..-
T Consensus 570 ~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~ 613 (732)
T TIGR00603 570 HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYY 613 (732)
T ss_pred CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHH
Confidence 7 5999999999999997755543 7888877665543
No 60
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=289.45 Aligned_cols=344 Identities=24% Similarity=0.307 Sum_probs=251.2
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
.+..+...+.+.|...|++||.+|+..+.+ |++++|..|||||||.+|++|+++.+..+... ++|++.|+++|+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a--~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRDPSA--RALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhCcCc--cEEEEechhhhH
Confidence 456668888888888999999999999887 99999999999999999999999999886543 799999999999
Q ss_pred HHHHHHHHHhccccC--ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCC
Q 011620 115 LQVKDVFAAIAPAVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~ 192 (481)
+.+.+.+.++....+ +.+..++|+....+.. ..+..+++|++|||+++...+.....
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~---------------------~~~~~pp~IllTNpdMLh~~llr~~~ 187 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERR---------------------AIIRNPPDILLTNPDMLHYLLLRNHD 187 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHH---------------------HHHhCCCCEEEeCHHHHHHHhccCcc
Confidence 999999999988776 7888888887655442 23457789999999999885554322
Q ss_pred ---cccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceee
Q 011620 193 ---FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (481)
Q Consensus 193 ---~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (481)
+.++.+++||+||+|.+ ..-++..+..++..+..... ......++
T Consensus 188 ~~~~~~~~Lk~lVvDElHtY-rGv~GS~vA~llRRL~~~~~-------------------------------~~~~~~q~ 235 (851)
T COG1205 188 AWLWLLRNLKYLVVDELHTY-RGVQGSEVALLLRRLLRRLR-------------------------------RYGSPLQI 235 (851)
T ss_pred hHHHHHhcCcEEEEecceec-cccchhHHHHHHHHHHHHHh-------------------------------ccCCCceE
Confidence 34677999999999964 44445555444443321100 00023489
Q ss_pred EEEeEEEecCcccccccccCCceeeecCCccccCCcccccceeccc---------CCCcHHHHHHHHH--hcCCCcEEEE
Q 011620 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE---------SKLKPLYLVALLQ--SLGEEKCIVF 338 (481)
Q Consensus 270 i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k~~~l~~~l~--~~~~~~~lVf 338 (481)
++.|||..+................ .... ..+.....+....+ .......+..+.. -.++-++|+|
T Consensus 236 i~~SAT~~np~e~~~~l~~~~f~~~-v~~~--g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F 312 (851)
T COG1205 236 ICTSATLANPGEFAEELFGRDFEVP-VDED--GSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVF 312 (851)
T ss_pred EEEeccccChHHHHHHhcCCcceee-ccCC--CCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEE
Confidence 9999999766555444333332221 1111 11111222222222 1122222222222 2256799999
Q ss_pred cCCchhHHHHHH----HHhhcC-CcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCC
Q 011620 339 TSSVESTHRLCT----LLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (481)
Q Consensus 339 ~~s~~~~~~l~~----~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p 413 (481)
+.++..++.+.. .+...+ .....+..+++++...+|..+...|+.|+..++++|++++-|+|+.+++.||..+.|
T Consensus 313 ~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P 392 (851)
T COG1205 313 FRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYP 392 (851)
T ss_pred EehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCC
Confidence 999999999962 332222 233568899999999999999999999999999999999999999999999999999
Q ss_pred C-ChhhHHHHHhhhhcCCCCCcEEEEEe
Q 011620 414 A-YIKTYIHRAGRTARAGQLGRCFTLLH 440 (481)
Q Consensus 414 ~-s~~~~~Q~~GR~~R~~~~g~~i~~~~ 440 (481)
. +..+++|+.||+||.++.+..+.+..
T Consensus 393 ~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 393 GVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred CchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9 89999999999999886665555555
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=5e-34 Score=273.11 Aligned_cols=315 Identities=18% Similarity=0.171 Sum_probs=203.3
Q ss_pred CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhh
Q 011620 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 150 (481)
+++|.+|||+|||.+++.+++..+.+. .+.+++|++|+++|+.|+++.+..++. .++...++....... ..
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~--~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~-~~--- 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ--KADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRI-KE--- 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC--CCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHH-hc---
Confidence 478999999999999999999876543 345899999999999999999988743 245555554332110 00
Q ss_pred cCccccCccCCchhHHHh------hccCCcEEEeCChhHHHhhhcC-CC--ccc--CCccEEEEecchhhhhHhHHhHHH
Q 011620 151 RPKLEAGICYDPEDVLQE------LQSAVDILVATPGRLMDHINAT-RG--FTL--EHLCYLVVDETDRLLREAYQAWLP 219 (481)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~------~~~~~~I~v~T~~~l~~~l~~~-~~--~~~--~~~~~iViDE~H~~~~~~~~~~~~ 219 (481)
.. ........+.. ......|+|+||+++...+... .. +.+ -..++||+||+|.+.+..+.. +.
T Consensus 72 ~~-----~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 72 MG-----DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred cC-----CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 00 00000000110 1123579999999998876651 11 111 123789999999987765443 44
Q ss_pred HHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCc
Q 011620 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (481)
Q Consensus 220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~ 299 (481)
.++..+.. ...+++++|||++.....+................
T Consensus 146 ~~l~~l~~-------------------------------------~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~ 188 (358)
T TIGR01587 146 AVLEVLKD-------------------------------------NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK 188 (358)
T ss_pred HHHHHHHH-------------------------------------cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc
Confidence 44443321 12378999999975444433322221111100100
Q ss_pred cccCCcccccce-e-cccCCCcHHHHHHHHHhc-CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHH
Q 011620 300 RYKLPERLESYK-L-ICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376 (481)
Q Consensus 300 ~~~~~~~~~~~~-~-~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~ 376 (481)
.......+.. . ......+...+..++... .++++||||++++.++.+++.|.+.+. +..+..+||++++.+|..
T Consensus 189 --~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~-~~~~~~~h~~~~~~~r~~ 265 (358)
T TIGR01587 189 --EERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAP-EEEIMLLHSRFTEKDRAK 265 (358)
T ss_pred --cccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcC-CCeEEEEECCCCHHHHHH
Confidence 0000001111 1 111223444555555443 467999999999999999999987652 136889999999999876
Q ss_pred ----HHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCC----cEEEEEeCCc
Q 011620 377 ----TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG----RCFTLLHKDE 443 (481)
Q Consensus 377 ----~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g----~~i~~~~~~~ 443 (481)
+++.|++|+.++||||+++++|+|++ ++.||++..| ...|+||+||+||.|+.+ .++++....+
T Consensus 266 ~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 266 KEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 48899999999999999999999996 7888887655 789999999999977542 5666655444
No 62
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.4e-34 Score=291.48 Aligned_cols=307 Identities=19% Similarity=0.231 Sum_probs=217.9
Q ss_pred hhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH-hccccCceEEEeecCCc
Q 011620 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQSS 140 (481)
Q Consensus 62 ~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~v~~~~~~~~ 140 (481)
+++.+..++++++.|+||||||.++.+++++... .+.+++++.|++.++.|+++.+.. +....|..|+.......
T Consensus 10 i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~ 85 (819)
T TIGR01970 10 LRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN 85 (819)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc
Confidence 3334445789999999999999999999887652 234799999999999999998854 44444555555443321
Q ss_pred hHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh-hhhHhHHh-HH
Q 011620 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQA-WL 218 (481)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~-~~~~~~~~-~~ 218 (481)
. .....+|+|+|++.|.+.+... ..++++++|||||+|. .++..+.- .+
T Consensus 86 ~---------------------------~s~~t~I~v~T~G~Llr~l~~d--~~L~~v~~VIiDEaHER~L~~Dl~L~ll 136 (819)
T TIGR01970 86 K---------------------------VSRRTRLEVVTEGILTRMIQDD--PELDGVGALIFDEFHERSLDADLGLALA 136 (819)
T ss_pred c---------------------------cCCCCcEEEECCcHHHHHHhhC--cccccCCEEEEeccchhhhccchHHHHH
Confidence 0 1234589999999999988763 4588999999999995 44443321 22
Q ss_pred HHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCC
Q 011620 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (481)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~ 298 (481)
..+...++ ...++++||||+.... + ..++.++..+....
T Consensus 137 ~~i~~~lr--------------------------------------~dlqlIlmSATl~~~~--l-~~~l~~~~vI~~~g 175 (819)
T TIGR01970 137 LDVQSSLR--------------------------------------EDLKILAMSATLDGER--L-SSLLPDAPVVESEG 175 (819)
T ss_pred HHHHHhcC--------------------------------------CCceEEEEeCCCCHHH--H-HHHcCCCcEEEecC
Confidence 22322221 2348999999986442 2 23333332332222
Q ss_pred ccccCCcccccceecccCCCcH-----HHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHH
Q 011620 299 TRYKLPERLESYKLICESKLKP-----LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373 (481)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 373 (481)
..+ .++.++.......+. ..+..++.. ..+.+|||+++..+++.+++.|.+....++.+..+||+++..+
T Consensus 176 r~~----pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~e 250 (819)
T TIGR01970 176 RSF----PVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAA 250 (819)
T ss_pred cce----eeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHH
Confidence 211 122333333222221 123333332 4678999999999999999999864223488999999999999
Q ss_pred HHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCC------------------ChhhHHHHHhhhhcCCCCCcE
Q 011620 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------------------YIKTYIHRAGRTARAGQLGRC 435 (481)
Q Consensus 374 r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~------------------s~~~~~Q~~GR~~R~~~~g~~ 435 (481)
|..+++.|++|+.+|||||+++++|||+|++++||+++.+. |..++.||.||+||. .+|.|
T Consensus 251 q~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~c 329 (819)
T TIGR01970 251 QDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVC 329 (819)
T ss_pred HHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEE
Confidence 99999999999999999999999999999999999999874 334689999999999 79999
Q ss_pred EEEEeCCcchhhh
Q 011620 436 FTLLHKDEVCLVG 448 (481)
Q Consensus 436 i~~~~~~~~~~~~ 448 (481)
+.+++..+...+.
T Consensus 330 yrL~t~~~~~~l~ 342 (819)
T TIGR01970 330 YRLWSEEQHQRLP 342 (819)
T ss_pred EEeCCHHHHHhhh
Confidence 9999987655443
No 63
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4.7e-34 Score=277.25 Aligned_cols=328 Identities=24% Similarity=0.290 Sum_probs=222.7
Q ss_pred CCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011620 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (481)
.-.+|+||.+....++ +++.+|++|||+|||+++...+.+++...+ ..+++|++|++.|+.|+...+..++..
T Consensus 60 ~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p--~~KiVF~aP~~pLv~QQ~a~~~~~~~~ 132 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRP--KGKVVFLAPTRPLVNQQIACFSIYLIP 132 (746)
T ss_pred cccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCC--cceEEEeeCCchHHHHHHHHHhhccCc
Confidence 3489999998865544 999999999999999999999998887754 358999999999999988777777543
Q ss_pred cCceEEEeecC-CchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecc
Q 011620 128 VGLSVGLAVGQ-SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (481)
Q Consensus 128 ~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~ 206 (481)
..+....|+ .+..... .+....+|+|+||+.+.+.+.+.....++++.++|||||
T Consensus 133 --~~~T~~l~~~~~~~~r~----------------------~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~ 188 (746)
T KOG0354|consen 133 --YSVTGQLGDTVPRSNRG----------------------EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDEC 188 (746)
T ss_pred --ccceeeccCccCCCchh----------------------hhhcccceEEeChHhhhhhcccccccccceEEEEEEccc
Confidence 334444443 2222111 123456999999999999998755444789999999999
Q ss_pred hhhhhHhHHhHHH-HHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccc
Q 011620 207 DRLLREAYQAWLP-TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (481)
Q Consensus 207 H~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~ 285 (481)
|+......+..+- ..+.... ...|++++|||+..+......
T Consensus 189 Hra~kn~~Y~~Vmr~~l~~k~--------------------------------------~~~qILgLTASpG~~~~~v~~ 230 (746)
T KOG0354|consen 189 HRTSKNHPYNNIMREYLDLKN--------------------------------------QGNQILGLTASPGSKLEQVQN 230 (746)
T ss_pred ccccccccHHHHHHHHHHhhh--------------------------------------ccccEEEEecCCCccHHHHHH
Confidence 9876655444433 3333222 122789999999855332111
Q ss_pred ---cc---cC--------C-----------ceeee----------------------------cCC-c-c----------
Q 011620 286 ---LD---LH--------H-----------PLFLT----------------------------TGE-T-R---------- 300 (481)
Q Consensus 286 ---~~---~~--------~-----------~~~~~----------------------------~~~-~-~---------- 300 (481)
.. +. . +.-+. ... . .
T Consensus 231 ~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~ 310 (746)
T KOG0354|consen 231 VIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEK 310 (746)
T ss_pred HHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhh
Confidence 00 00 0 00000 000 0 0
Q ss_pred ---ccCCcccc-cc--------------------------------------------------------------eecc
Q 011620 301 ---YKLPERLE-SY--------------------------------------------------------------KLIC 314 (481)
Q Consensus 301 ---~~~~~~~~-~~--------------------------------------------------------------~~~~ 314 (481)
...+..-. .+ ....
T Consensus 311 ~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~ 390 (746)
T KOG0354|consen 311 AAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDP 390 (746)
T ss_pred hhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCC
Confidence 00000000 00 0000
Q ss_pred -cCCCcHHHHHHHHH----hcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccC--------ccChHHHHHHHHHH
Q 011620 315 -ESKLKPLYLVALLQ----SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG--------LQRQSVRSKTLKAF 381 (481)
Q Consensus 315 -~~~~k~~~l~~~l~----~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~--------~~~~~~r~~~~~~f 381 (481)
....|.+.+.+.+. .....++|||+..+..|..+...|.+....+++..++.| +|++.++.++++.|
T Consensus 391 ~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~F 470 (746)
T KOG0354|consen 391 PKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKF 470 (746)
T ss_pred CccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHH
Confidence 01122222222222 223468999999999999999999854333344444433 88999999999999
Q ss_pred hcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchh
Q 011620 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCL 446 (481)
Q Consensus 382 ~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~ 446 (481)
++|+.+|||||++.++|+|++.|+.||.||...|+...+||.|| ||. +.|.++.+......-.
T Consensus 471 r~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~~ 533 (746)
T KOG0354|consen 471 RDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVIE 533 (746)
T ss_pred hCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHHH
Confidence 99999999999999999999999999999999999999999999 997 5789999888544333
No 64
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2.7e-33 Score=295.41 Aligned_cols=326 Identities=21% Similarity=0.299 Sum_probs=223.9
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
+|+ .|+++|..+++.++. |+++++.||||+|||..+ ++++..+.. ++.+++|++||++|+.|+++.++.++
T Consensus 77 ~G~-~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f~-l~~~~~l~~---~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTFG-LVMSLYLAK---KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHHH-HHHHHHHHh---cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 476 899999999999887 999999999999999754 444444432 35689999999999999999999999
Q ss_pred cccCceEEEeecCCch-HHHHHHhhhcCccccCccCCchhHHHhhc-cCCcEEEeCChhHHHhhhcCCCcccCCccEEEE
Q 011620 126 PAVGLSVGLAVGQSSI-ADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iVi 203 (481)
...++.+..+.++... .++. ......+. ..++|+|+||+++.+++.. +....++++|+
T Consensus 148 ~~~~~~~~~~~g~~~~~~~ek-----------------~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~~~~~lVv 207 (1176)
T PRK09401 148 EKVGCGVKILYYHSSLKKKEK-----------------EEFLERLKEGDFDILVTTSQFLSKNFDE---LPKKKFDFVFV 207 (1176)
T ss_pred hhcCceEEEEEccCCcchhHH-----------------HHHHHHHhcCCCCEEEECHHHHHHHHHh---ccccccCEEEE
Confidence 8888888777766542 1111 11112233 3489999999999988763 44556999999
Q ss_pred ecchhhhhH-----------hHH-hHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEE
Q 011620 204 DETDRLLRE-----------AYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (481)
Q Consensus 204 DE~H~~~~~-----------~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (481)
||||++++. +|. +.+..++..++..... ......+..+.. .+........|+++
T Consensus 208 DEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~---------~~~~~~i~~l~~-----~i~~~~~~~~q~il 273 (1176)
T PRK09401 208 DDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY---------EEIYEKIRELEE-----KIAELKDKKGVLVV 273 (1176)
T ss_pred EChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccccccc---------chhhhHHHHHHH-----hhhhcccCCceEEE
Confidence 999999862 342 4556666555431110 000000000000 00000001458999
Q ss_pred EeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchh---HHHH
Q 011620 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVES---THRL 348 (481)
Q Consensus 272 ~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~---~~~l 348 (481)
+|||.++..... .....+..+..+.... ....+.+.+.... .+...+..++.... .++||||++... ++.+
T Consensus 274 fSAT~~~~~~~~--~l~~~ll~~~v~~~~~-~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l 347 (1176)
T PRK09401 274 SSATGRPRGNRV--KLFRELLGFEVGSPVF-YLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEEL 347 (1176)
T ss_pred EeCCCCccchHH--HHhhccceEEecCccc-ccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHH
Confidence 999987542211 1112222232222221 2233444444333 46666777776554 689999999877 9999
Q ss_pred HHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEe----cccccccCCCCC-CCEEEEecCCC------Chh
Q 011620 349 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKPA------YIK 417 (481)
Q Consensus 349 ~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~----t~~l~~Gidi~~-~~~vI~~~~p~------s~~ 417 (481)
++.|...+ +++..+||++ ...++.|++|+++|||| |+.+++|+|+|+ +++||+|+.|. ...
T Consensus 348 ~~~L~~~g---i~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~ 419 (1176)
T PRK09401 348 AEYLEDLG---INAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEEL 419 (1176)
T ss_pred HHHHHHCC---CcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccc
Confidence 99999877 8999999998 23459999999999999 689999999999 89999999997 567
Q ss_pred hHHHHHhhhhc
Q 011620 418 TYIHRAGRTAR 428 (481)
Q Consensus 418 ~~~Q~~GR~~R 428 (481)
.+.+|+||+..
T Consensus 420 ~~~~~~~r~~~ 430 (1176)
T PRK09401 420 APPFLLLRLLS 430 (1176)
T ss_pred cCHHHHHHHHh
Confidence 79999999864
No 65
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.1e-32 Score=288.89 Aligned_cols=325 Identities=22% Similarity=0.277 Sum_probs=226.9
Q ss_pred CCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011620 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (481)
..++|+||.++...+++ ++.+|++|||+|||+++++++...+. ..+.++||++|+++|+.|+.+.+..+...
T Consensus 13 ~~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~---~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH---KKGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH---hCCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 34899999999887764 48999999999999999988887763 23457999999999999999999988654
Q ss_pred cCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecch
Q 011620 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H 207 (481)
.+.++..+.|+....+.. .+...++|+|+||+.+...+.. +.+.+.++++|||||||
T Consensus 85 ~~~~v~~~~g~~~~~~r~----------------------~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 85 PEEKIVVFTGEVSPEKRA----------------------ELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAH 141 (773)
T ss_pred CCceEEEEeCCCCHHHHH----------------------HHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCc
Confidence 455778888876554321 1223468999999999887765 44668889999999999
Q ss_pred hhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccc--
Q 011620 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-- 285 (481)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~-- 285 (481)
++........+...+.... ....++++|||+......+..
T Consensus 142 ~~~~~~~~~~i~~~~~~~~--------------------------------------~~~~il~lTaTP~~~~~~i~~~~ 183 (773)
T PRK13766 142 RAVGNYAYVYIAERYHEDA--------------------------------------KNPLVLGLTASPGSDEEKIKEVC 183 (773)
T ss_pred cccccccHHHHHHHHHhcC--------------------------------------CCCEEEEEEcCCCCCHHHHHHHH
Confidence 8865433322222221111 112577788887432111000
Q ss_pred -c------------------ccCCceee--ec--C------------------------CccccCC--------------
Q 011620 286 -L------------------DLHHPLFL--TT--G------------------------ETRYKLP-------------- 304 (481)
Q Consensus 286 -~------------------~~~~~~~~--~~--~------------------------~~~~~~~-------------- 304 (481)
. .+..+... .. . .......
T Consensus 184 ~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~ 263 (773)
T PRK13766 184 ENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKK 263 (773)
T ss_pred HhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHH
Confidence 0 00000000 00 0 0000000
Q ss_pred ------c-cc---------------------------------------------------------------ccceecc
Q 011620 305 ------E-RL---------------------------------------------------------------ESYKLIC 314 (481)
Q Consensus 305 ------~-~~---------------------------------------------------------------~~~~~~~ 314 (481)
. .. .......
T Consensus 264 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 343 (773)
T PRK13766 264 LQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELD 343 (773)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcc
Confidence 0 00 0000001
Q ss_pred cCCCcHHHHHHHHHh----cCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCc--------cChHHHHHHHHHHh
Q 011620 315 ESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL--------QRQSVRSKTLKAFR 382 (481)
Q Consensus 315 ~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~--------~~~~~r~~~~~~f~ 382 (481)
....|...+.+++.. ..+.++||||++.+.++.+.+.|...+ +.+..+||. ++..+|..++++|+
T Consensus 344 ~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~ 420 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEG---IKAVRFVGQASKDGDKGMSQKEQIEILDKFR 420 (773)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCC---CceEEEEccccccccCCCCHHHHHHHHHHHH
Confidence 123345555555544 467799999999999999999997665 666677765 88899999999999
Q ss_pred cCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcch
Q 011620 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVC 445 (481)
Q Consensus 383 ~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~ 445 (481)
+|+.++||+|+++++|+|+|.+++||+|++|++...|+||+||+||.+ .|.+++++..+..+
T Consensus 421 ~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~e 482 (773)
T PRK13766 421 AGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTRD 482 (773)
T ss_pred cCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCChH
Confidence 999999999999999999999999999999999999999999999975 48888888776543
No 66
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9.7e-34 Score=289.79 Aligned_cols=305 Identities=21% Similarity=0.240 Sum_probs=215.4
Q ss_pred hhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH-hccccCceEEEeecCCc
Q 011620 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQSS 140 (481)
Q Consensus 62 ~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~v~~~~~~~~ 140 (481)
+++.+..++++++.|+||||||.++.+++++... .+.+++++.|++.++.|+++.+.. +....|..++...++..
T Consensus 13 i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~----~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~ 88 (812)
T PRK11664 13 LLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG----INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES 88 (812)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC----cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc
Confidence 3444445789999999999999999988886532 223799999999999999998854 44445666666555432
Q ss_pred hHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhh-hhHhH-HhHH
Q 011620 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-LREAY-QAWL 218 (481)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~-~~~~~-~~~~ 218 (481)
.. ....+|+|+|++.|.+.+... ..++++++||+||+|.. .+... ...+
T Consensus 89 ~~---------------------------~~~t~I~v~T~G~Llr~l~~d--~~L~~v~~IIlDEaHER~l~~Dl~L~ll 139 (812)
T PRK11664 89 KV---------------------------GPNTRLEVVTEGILTRMIQRD--PELSGVGLVILDEFHERSLQADLALALL 139 (812)
T ss_pred cc---------------------------CCCCcEEEEChhHHHHHHhhC--CCcCcCcEEEEcCCCccccccchHHHHH
Confidence 11 123479999999999988763 45889999999999962 22221 1122
Q ss_pred HHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCC
Q 011620 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (481)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~ 298 (481)
..+...++ ...++++||||+... .+ ..++.+...+....
T Consensus 140 ~~i~~~lr--------------------------------------~~lqlilmSATl~~~--~l-~~~~~~~~~I~~~g 178 (812)
T PRK11664 140 LDVQQGLR--------------------------------------DDLKLLIMSATLDND--RL-QQLLPDAPVIVSEG 178 (812)
T ss_pred HHHHHhCC--------------------------------------ccceEEEEecCCCHH--HH-HHhcCCCCEEEecC
Confidence 22222211 234899999999643 22 23333332332222
Q ss_pred ccccCCcccccceecccCCCcHH-----HHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHH
Q 011620 299 TRYKLPERLESYKLICESKLKPL-----YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373 (481)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 373 (481)
..+ .++.++.......+.. .+...+.. ..+.+|||+++..+++.+++.|.+....++.+..+||+++..+
T Consensus 179 r~~----pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~e 253 (812)
T PRK11664 179 RSF----PVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAE 253 (812)
T ss_pred ccc----cceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHH
Confidence 211 1233333332222222 22333332 4689999999999999999999863223478999999999999
Q ss_pred HHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCC------------------ChhhHHHHHhhhhcCCCCCcE
Q 011620 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------------------YIKTYIHRAGRTARAGQLGRC 435 (481)
Q Consensus 374 r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~------------------s~~~~~Q~~GR~~R~~~~g~~ 435 (481)
|..+++.|++|+.+|||||+++++|+|+|++++||+++.+. |..++.||.||+||. .+|.|
T Consensus 254 q~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~c 332 (812)
T PRK11664 254 QQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGIC 332 (812)
T ss_pred HHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEE
Confidence 99999999999999999999999999999999999988664 345899999999998 69999
Q ss_pred EEEEeCCcchh
Q 011620 436 FTLLHKDEVCL 446 (481)
Q Consensus 436 i~~~~~~~~~~ 446 (481)
+.+++..+...
T Consensus 333 yrL~t~~~~~~ 343 (812)
T PRK11664 333 LHLYSKEQAER 343 (812)
T ss_pred EEecCHHHHhh
Confidence 99999766543
No 67
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.3e-33 Score=303.79 Aligned_cols=352 Identities=17% Similarity=0.220 Sum_probs=233.7
Q ss_pred HHHHHHHHH-cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHH
Q 011620 37 PRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 37 ~~~~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~ 115 (481)
.++.+.+++ +|| +|++.|..+++.++. |+++++.||||+|||+.++.+++... .++.+++|++||++|+.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~----~~g~~aLVl~PTreLa~ 136 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLA----LKGKKCYIILPTTLLVK 136 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHH----hcCCeEEEEECHHHHHH
Confidence 345555666 799 799999999999997 99999999999999996665544332 23558999999999999
Q ss_pred HHHHHHHHhcccc--CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhcc-CCcEEEeCChhHHHhhhcCCC
Q 011620 116 QVKDVFAAIAPAV--GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRG 192 (481)
Q Consensus 116 q~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~v~T~~~l~~~l~~~~~ 192 (481)
|+.+.++.++... ++.+..++|+....++.. .++.+.. .++|+|+||+.+...+...
T Consensus 137 Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~------------------~~~~l~~g~~dILV~TPgrL~~~~~~l-- 196 (1638)
T PRK14701 137 QTVEKIESFCEKANLDVRLVYYHSNLRKKEKEE------------------FLERIENGDFDILVTTAQFLARNFPEM-- 196 (1638)
T ss_pred HHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHH------------------HHHHHhcCCCCEEEECCchhHHhHHHH--
Confidence 9999999988765 456677888877655422 1222333 4899999999998776542
Q ss_pred cccCCccEEEEecchhhhhH-----------hHHhHHHH-HHHhcccCccccccccccccccccccchhhhhccccccCC
Q 011620 193 FTLEHLCYLVVDETDRLLRE-----------AYQAWLPT-VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (481)
Q Consensus 193 ~~~~~~~~iViDE~H~~~~~-----------~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
...+++++|+||||.++.. +|...+.. ++..+......... ........+.. ...
T Consensus 197 -~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~-------~~~~~~~~l~~-----~~~ 263 (1638)
T PRK14701 197 -KHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIE-------DAMEKREILNK-----EIE 263 (1638)
T ss_pred -hhCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccc-------hhhhhhhhhhh-----hhh
Confidence 1257899999999998752 34333322 22222110000000 00000000000 000
Q ss_pred CCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcC
Q 011620 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (481)
Q Consensus 261 ~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~ 340 (481)
..+......+++|||.++..... ..+..+..+..+.....+ ..+.+.+.......+ ..+..+++.. +..+||||+
T Consensus 264 ~~~~~~~~ll~~SAT~~~r~~~~--~l~~~~l~f~v~~~~~~l-r~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~ 338 (1638)
T PRK14701 264 KIGNKIGCLIVASATGKAKGDRV--KLYRELLGFEVGSGRSAL-RNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVP 338 (1638)
T ss_pred hcCCCccEEEEEecCCCchhHHH--HHhhcCeEEEecCCCCCC-CCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEe
Confidence 00011123677999987532211 122344444444443322 334444443333323 4566777665 568999999
Q ss_pred Cchh---HHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEec----ccccccCCCCC-CCEEEEecC
Q 011620 341 SVES---THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYDK 412 (481)
Q Consensus 341 s~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t----~~l~~Gidi~~-~~~vI~~~~ 412 (481)
+.+. ++.+++.|.+.+ +++..+|++ |...++.|++|+++||||| +.+.+|||+|+ +++||+++.
T Consensus 339 t~~~~e~ae~la~~L~~~G---i~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~ 410 (1638)
T PRK14701 339 IDEGAEKAEEIEKYLLEDG---FKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGV 410 (1638)
T ss_pred ccccchHHHHHHHHHHHCC---CeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCC
Confidence 9775 589999999876 899999985 8899999999999999999 47899999998 999999999
Q ss_pred CC---ChhhHHHHH-------------hhhhcCCCCCcEEEEEeCCc
Q 011620 413 PA---YIKTYIHRA-------------GRTARAGQLGRCFTLLHKDE 443 (481)
Q Consensus 413 p~---s~~~~~Q~~-------------GR~~R~~~~g~~i~~~~~~~ 443 (481)
|. +...|.|-. ||++|.|....++..+...+
T Consensus 411 Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~ 457 (1638)
T PRK14701 411 PKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPED 457 (1638)
T ss_pred CCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHH
Confidence 98 777666654 99999988777764433333
No 68
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=5.9e-32 Score=285.80 Aligned_cols=318 Identities=20% Similarity=0.258 Sum_probs=205.6
Q ss_pred HHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHH
Q 011620 39 LKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (481)
Q Consensus 39 ~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~ 118 (481)
+.+.+.+.....|+++|+.+++.++. |+++++.||||+|||. +.++++..+.. ++++++|++||++|+.|++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~-f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTT-FGLAMSLFLAK---KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeCHHHHHHHHH
Confidence 44444443334899999999998887 9999999999999997 44555554433 3568999999999999999
Q ss_pred HHHHHhccccCceEE---EeecCCchHHHHHHhhhcCccccCccCCchhHHHhhc-cCCcEEEeCChhHHHhhhcCCCcc
Q 011620 119 DVFAAIAPAVGLSVG---LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 119 ~~~~~~~~~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~~~~ 194 (481)
+.+..++...++.+. .++|+....+.... +..+. .+++|+|+||+++...+....
T Consensus 139 ~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~------------------~~~l~~~~~dIlV~Tp~rL~~~~~~l~--- 197 (1171)
T TIGR01054 139 EKISSLAEKAGVGTVNIGAYHSRLPTKEKKEF------------------MERIENGDFDILITTTMFLSKNYDELG--- 197 (1171)
T ss_pred HHHHHHHHhcCCceeeeeeecCCCCHHHHHHH------------------HHHHhcCCCCEEEECHHHHHHHHHHhc---
Confidence 999999877665543 46777665543211 12222 348999999999988776522
Q ss_pred cCCccEEEEecchhhhhH-----------hHHh-HHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCC
Q 011620 195 LEHLCYLVVDETDRLLRE-----------AYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~-----------~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (481)
. +++++|+||||.+++. +|.. .+..++........ ............ ......
T Consensus 198 ~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~----------~~~~~~~~~~~~--~~~~~~-- 262 (1171)
T TIGR01054 198 P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLK----------LYRALHAKKRLE--LLEAIP-- 262 (1171)
T ss_pred C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccc----------cchHHHHHHHHH--HHHhhh--
Confidence 2 7899999999999873 2322 23333332221100 000000000000 000000
Q ss_pred CCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCc
Q 011620 263 PYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 342 (481)
Q Consensus 263 ~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~ 342 (481)
.....+++++|||..+..... ........+..+.... ....+.+.+..... +...+..+++.. +.++||||++.
T Consensus 263 ~~~q~~li~~SAT~~p~~~~~--~l~r~ll~~~v~~~~~-~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~ 336 (1171)
T TIGR01054 263 GKKRGCLIVSSATGRPRGKRA--KLFRELLGFEVGGGSD-TLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSID 336 (1171)
T ss_pred hccCcEEEEEeCCCCccccHH--HHcccccceEecCccc-cccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEecc
Confidence 001113567899943322110 1122222233333222 22334444433222 234566666654 46899999999
Q ss_pred ---hhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEec----ccccccCCCCC-CCEEEEecCC
Q 011620 343 ---ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYDKP 413 (481)
Q Consensus 343 ---~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t----~~l~~Gidi~~-~~~vI~~~~p 413 (481)
+.++.++..|.+.+ +++..+||+++ ...++.|++|+.+||||| +.+.+|+|+|+ +++||+++.|
T Consensus 337 ~~~~~a~~l~~~L~~~g---~~a~~lhg~~~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 337 YGKEKAEEIAEFLENHG---VKAVAYHATKP----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred ccHHHHHHHHHHHHhCC---ceEEEEeCCCC----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 99999999998876 89999999986 368899999999999994 89999999999 8999998876
No 69
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.2e-32 Score=268.03 Aligned_cols=357 Identities=22% Similarity=0.247 Sum_probs=237.4
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.|+ .|++.|..++..++. |+ +.++.||+|||+++.+|++..... |..++|++||+.|+.|.++++.++.
T Consensus 100 lg~-~p~~VQ~~~~~~ll~----G~--Iae~~TGeGKTla~~lp~~~~al~----G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLS----GR--LAEMQTGEGKTLTATLPAGTAALA----GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred hCC-CCChHHHHHHHHHhC----CC--eeeeeCCCCcHHHHHHHHHHHhhc----CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 465 799999999988875 66 999999999999999999876543 4579999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-HHhhhcC--------------
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-------------- 190 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~-------------- 190 (481)
..+|+++.++.|+...... ....+++|+++|...| .+.+...
T Consensus 169 ~~lGlsv~~i~gg~~~~~r-----------------------~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~ 225 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDER-----------------------RAAYGADITYCTNKELVFDYLRDRLALGQRASDARLAL 225 (656)
T ss_pred hhcCCEEEEEeCCCCHHHH-----------------------HHHcCCCEEEECCCchhhhhccccccccccccchhhhh
Confidence 9999999999998653322 1235679999998766 2222211
Q ss_pred ----------CCcccCCccEEEEecchhhhhH------------------hHHhHHHHHHHhcccCc-------ccc--c
Q 011620 191 ----------RGFTLEHLCYLVVDETDRLLRE------------------AYQAWLPTVLQLTRSDN-------ENR--F 233 (481)
Q Consensus 191 ----------~~~~~~~~~~iViDE~H~~~~~------------------~~~~~~~~i~~~~~~~~-------~~~--~ 233 (481)
.......+.+.||||+|.++-+ ........+...+.... ... +
T Consensus 226 ~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~l 305 (656)
T PRK12898 226 ESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIEL 305 (656)
T ss_pred hhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEE
Confidence 1122456789999999953211 12222222222221110 000 0
Q ss_pred c--------ccccccccccccc--------------hhhhh--------c-------cccccCCCCCC------------
Q 011620 234 S--------DASTFLPSAFGSL--------------KTIRR--------C-------GVERGFKDKPY------------ 264 (481)
Q Consensus 234 ~--------~~~~~~~~~~~~~--------------~~~~~--------~-------~~~~~~~~~~~------------ 264 (481)
. .....+...+... ..... . ...+.+....|
T Consensus 306 t~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE 385 (656)
T PRK12898 306 TEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKE 385 (656)
T ss_pred cHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhc
Confidence 0 0000000000000 00000 0 00000000000
Q ss_pred ---------------------cceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHH
Q 011620 265 ---------------------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL 323 (481)
Q Consensus 265 ---------------------~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 323 (481)
...++.+||+|.......+...+..+++.+...... ... .....+.++...|...+
T Consensus 386 ~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~-~~~~~v~~t~~~K~~aL 462 (656)
T PRK12898 386 GCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRR-HLPDEVFLTAAAKWAAV 462 (656)
T ss_pred CCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cce-ecCCEEEeCHHHHHHHH
Confidence 001356889998766656666555555444333222 211 22334455566677888
Q ss_pred HHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCC
Q 011620 324 VALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401 (481)
Q Consensus 324 ~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi 401 (481)
...+... .+.++||||+++..++.++..|.+.+ +++..+|+..+. ++..+..|..+...|+|||+++++|+||
T Consensus 463 ~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~g---i~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI 537 (656)
T PRK12898 463 AARVRELHAQGRPVLVGTRSVAASERLSALLREAG---LPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDI 537 (656)
T ss_pred HHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC---CCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCc
Confidence 8777654 35689999999999999999999877 899999998654 4555555665666899999999999999
Q ss_pred C---CCC-----EEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 402 E---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 402 ~---~~~-----~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
+ ++. +||+++.|.|...|.||+||+||.|.+|.++.|++..|.
T Consensus 538 ~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 538 KLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred CCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 8 565 999999999999999999999999999999999998663
No 70
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=3.4e-32 Score=269.79 Aligned_cols=357 Identities=17% Similarity=0.190 Sum_probs=225.3
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
.++|+|.+++..+.- ++..+++++||+|||++|++|+...... +..++|++|++.|+.|+++++..+...+|
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~l~aL~----g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLYLNALT----GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHHHHhhc----CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 356666666655543 4457999999999999999998655543 33699999999999999999999999999
Q ss_pred ceEEEeecCCc---hHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-HHhhhc-----CCCcccCCccE
Q 011620 130 LSVGLAVGQSS---IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINA-----TRGFTLEHLCY 200 (481)
Q Consensus 130 ~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~-----~~~~~~~~~~~ 200 (481)
+++....++.. ...... ....+++|+++||+.| .+.+.. .....+..+.+
T Consensus 140 Lsv~~~~~~s~~~~~~~~~r---------------------r~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~ 198 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEK---------------------RKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNY 198 (762)
T ss_pred CcEEEEECCCCccccCHHHH---------------------HHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcE
Confidence 99988776532 111111 1224689999999999 443321 12234678999
Q ss_pred EEEecchhhhhH----------------hHHhHHHHHHHhcccCc--------cc-cccccc-----cc--cccccccc-
Q 011620 201 LVVDETDRLLRE----------------AYQAWLPTVLQLTRSDN--------EN-RFSDAS-----TF--LPSAFGSL- 247 (481)
Q Consensus 201 iViDE~H~~~~~----------------~~~~~~~~i~~~~~~~~--------~~-~~~~~~-----~~--~~~~~~~~- 247 (481)
+|+||||.++-+ ........+...+.... .. .+.+.+ .. ....+...
T Consensus 199 ~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~ 278 (762)
T TIGR03714 199 VIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEY 278 (762)
T ss_pred EEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhh
Confidence 999999986432 11122222222222110 00 000000 00 00000000
Q ss_pred -----------h---hhhhc---------------cccccCCCC-------------------------------CC--c
Q 011620 248 -----------K---TIRRC---------------GVERGFKDK-------------------------------PY--P 265 (481)
Q Consensus 248 -----------~---~~~~~---------------~~~~~~~~~-------------------------------~~--~ 265 (481)
. ..... ...+.+... .+ .
T Consensus 279 ~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~ 358 (762)
T TIGR03714 279 FELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKM 358 (762)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhh
Confidence 0 00000 000000000 00 0
Q ss_pred ceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHh--cCCCcEEEEcCCch
Q 011620 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE 343 (481)
Q Consensus 266 ~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~ 343 (481)
..++.+||+|.......+.. .++..++......+....... -.+......|...+...+.. ..+.++||||+++.
T Consensus 359 Y~kl~GmTGTa~~~~~Ef~~--iY~l~v~~IPt~kp~~r~d~~-d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~ 435 (762)
T TIGR03714 359 FNKLSGMTGTGKVAEKEFIE--TYSLSVVKIPTNKPIIRIDYP-DKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVE 435 (762)
T ss_pred CchhcccCCCChhHHHHHHH--HhCCCEEEcCCCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHH
Confidence 01345667775433333332 222222222222222211111 12334455677777777755 45779999999999
Q ss_pred hHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCC---------CCCEEEEecCCC
Q 011620 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---------GVNNVVNYDKPA 414 (481)
Q Consensus 344 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~---------~~~~vI~~~~p~ 414 (481)
.++.+...|.+.+ +++..+|+.+...++..+...++.| .|+|||+++++|+|++ ++.+|+.++.|.
T Consensus 436 ~se~ls~~L~~~g---i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps 510 (762)
T TIGR03714 436 MSEIYSELLLREG---IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMEN 510 (762)
T ss_pred HHHHHHHHHHHCC---CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCC
Confidence 9999999999877 8899999999988887777666666 7999999999999999 899999999998
Q ss_pred ChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 415 s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
.... .||.||+||.|.+|.++.|++..+.
T Consensus 511 ~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 511 SRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred cHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 8766 9999999999999999999997664
No 71
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=4.4e-32 Score=262.50 Aligned_cols=303 Identities=23% Similarity=0.293 Sum_probs=207.5
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (481)
..||+||.+|+.++......++..++.+|||+|||.+++..+... . .++|||+|+.+|+.||++.+..+....
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-~------~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-K------RSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-c------CCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 379999999999998866667889999999999999987755432 1 249999999999999998777765431
Q ss_pred CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh
Q 011620 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~ 208 (481)
..++.+.++..... . ..|.|+|++++...... ..+....+++||+||||+
T Consensus 108 -~~~g~~~~~~~~~~---------------------------~-~~i~vat~qtl~~~~~l-~~~~~~~~~liI~DE~Hh 157 (442)
T COG1061 108 -DEIGIYGGGEKELE---------------------------P-AKVTVATVQTLARRQLL-DEFLGNEFGLIIFDEVHH 157 (442)
T ss_pred -cccceecCceeccC---------------------------C-CcEEEEEhHHHhhhhhh-hhhcccccCEEEEEcccc
Confidence 23334433321100 0 26999999999885211 123344689999999999
Q ss_pred hhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccc--c
Q 011620 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ--L 286 (481)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~--~ 286 (481)
+.+..+......+.... ..+++|||+...-..... .
T Consensus 158 ~~a~~~~~~~~~~~~~~------------------------------------------~~LGLTATp~R~D~~~~~~l~ 195 (442)
T COG1061 158 LPAPSYRRILELLSAAY------------------------------------------PRLGLTATPEREDGGRIGDLF 195 (442)
T ss_pred CCcHHHHHHHHhhhccc------------------------------------------ceeeeccCceeecCCchhHHH
Confidence 98877665544333221 268889996522211111 0
Q ss_pred ccCCceeeecCCc-----cccCCcccccc------------------------------------eecccCCCcHHHHHH
Q 011620 287 DLHHPLFLTTGET-----RYKLPERLESY------------------------------------KLICESKLKPLYLVA 325 (481)
Q Consensus 287 ~~~~~~~~~~~~~-----~~~~~~~~~~~------------------------------------~~~~~~~~k~~~l~~ 325 (481)
....+..+..... ....+..+... ........+...+..
T Consensus 196 ~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (442)
T COG1061 196 DLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRG 275 (442)
T ss_pred HhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHH
Confidence 1111122211110 10000000000 000111222233334
Q ss_pred HHHhc-CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCC
Q 011620 326 LLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404 (481)
Q Consensus 326 ~l~~~-~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~ 404 (481)
++... .+.+++||+.+..+++.++..+...+ . +..+.+..+..+|.++++.|+.|+.++|+++.++.+|+|+|++
T Consensus 276 ~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~---~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~ 351 (442)
T COG1061 276 LLLKHARGDKTLIFASDVEHAYEIAKLFLAPG---I-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDA 351 (442)
T ss_pred HHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC---c-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCC
Confidence 44433 46799999999999999999997655 3 7789999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCChhhHHHHHhhhhc-CCCCCc
Q 011620 405 NNVVNYDKPAYIKTYIHRAGRTAR-AGQLGR 434 (481)
Q Consensus 405 ~~vI~~~~p~s~~~~~Q~~GR~~R-~~~~g~ 434 (481)
+++|+.+++.|...|+||+||+.| ...++.
T Consensus 352 ~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 352 DVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred cEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 999999999999999999999999 433444
No 72
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-32 Score=245.35 Aligned_cols=341 Identities=18% Similarity=0.225 Sum_probs=239.2
Q ss_pred HHHHHHHH-cCCCCC-chhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHH
Q 011620 38 RLKVALQN-MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 38 ~~~~~l~~-~~~~~~-~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~ 115 (481)
.+.++|++ ||+..+ ++.|..|+..++. .++|+.|++|||+||+++|.+|++- . +..+||+.|..+|..
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPaL~------~-~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPALV------H-GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchHHH------h-CCeEEEehHHHHHHH
Confidence 45677877 788765 6899999988886 4589999999999999999999873 1 227999999999999
Q ss_pred HHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHH-----hhhcC
Q 011620 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD-----HINAT 190 (481)
Q Consensus 116 q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~-----~l~~~ 190 (481)
.+.+-+.++ .+++..+.+..+..+..+.+... ..-.....++..||++... ++..
T Consensus 76 DQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL---------------~~ekp~~K~LYITPE~AAt~~FQ~lLn~- 135 (641)
T KOG0352|consen 76 DQIDHLKRL----KVPCESLNSKLSTVERSRIMGDL---------------AKEKPTIKMLYITPEGAATDGFQKLLNG- 135 (641)
T ss_pred HHHHHHHhc----CCchhHhcchhhHHHHHHHHHHH---------------HhcCCceeEEEEchhhhhhhhHHHHHHH-
Confidence 877777776 55566666655544332221110 0112346799999986532 2221
Q ss_pred CCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeE
Q 011620 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (481)
Q Consensus 191 ~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (481)
...-.-+.++|+||||.....+. .+..-+ +.-+.....++..+.+
T Consensus 136 -L~~r~~L~Y~vVDEAHCVSQWGH------------------------DFRPDY----------L~LG~LRS~~~~vpwv 180 (641)
T KOG0352|consen 136 -LANRDVLRYIVVDEAHCVSQWGH------------------------DFRPDY----------LTLGSLRSVCPGVPWV 180 (641)
T ss_pred -HhhhceeeeEEechhhhHhhhcc------------------------ccCcch----------hhhhhHHhhCCCCceE
Confidence 11233478999999998743321 111100 0111111223566889
Q ss_pred EEeEEEecCccc--ccccccCCceeeecCCccccCCcccccceecccC----CCcHHHHHHHHH-------------hcC
Q 011620 271 VLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICES----KLKPLYLVALLQ-------------SLG 331 (481)
Q Consensus 271 ~~Sat~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~k~~~l~~~l~-------------~~~ 331 (481)
.++||-+..+.+ .....+.+|+-+-.... ....++..... ......|.+... +.-
T Consensus 181 ALTATA~~~VqEDi~~qL~L~~PVAiFkTP~------FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~ 254 (641)
T KOG0352|consen 181 ALTATANAKVQEDIAFQLKLRNPVAIFKTPT------FRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTF 254 (641)
T ss_pred EeecccChhHHHHHHHHHhhcCcHHhccCcc------hhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCc
Confidence 999998877665 34455666664422221 11111111100 001111211111 112
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEec
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~ 411 (481)
.+..||||.+++.++.++-.|...| +...-+|.++...+|.++-+.|-+++..||++|.++++|+|-|++++||+.+
T Consensus 255 ~GCGIVYCRTR~~cEq~AI~l~~~G---i~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~ 331 (641)
T KOG0352|consen 255 TGCGIVYCRTRNECEQVAIMLEIAG---IPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWS 331 (641)
T ss_pred CcceEEEeccHHHHHHHHHHhhhcC---cchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecC
Confidence 4579999999999999999999887 8888999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcc
Q 011620 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTP 452 (481)
Q Consensus 412 ~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~ 452 (481)
.|.++.-|.|-.||+||.|..++|-++++..|...+.-++.
T Consensus 332 ~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 332 PSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred chhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 99999999999999999999999999999999887776543
No 73
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.6e-31 Score=267.60 Aligned_cols=358 Identities=17% Similarity=0.215 Sum_probs=229.3
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.|. .|++.|.-+...+.+ |+ +.++.||+|||+++++|++..... |..++|++||+.||.|.++++..+.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~----G~--Iaem~TGeGKTL~a~lp~~l~al~----G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHE----GN--IAEMQTGEGKTLTATMPLYLNALE----GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHcC----Cc--eeeecCCCcchHHHHHHHHHHHHc----CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 465 788888877664432 44 999999999999999998855443 4579999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-HHhhhcC-----CCcccCCcc
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~-----~~~~~~~~~ 199 (481)
..+|+++..+.|+.......+ ....++|+++||..+ .+.+... ....+..+.
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~----------------------~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~ 201 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKK----------------------AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLN 201 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHH----------------------HhcCCCEEEECCccccchhHHhccccchhhhcccccc
Confidence 999999999999877322211 124479999999888 3333221 113467789
Q ss_pred EEEEecchhhhhH----------------hHHhHHHHHHHhcccCc-------ccc--cccccc-------cccccccc-
Q 011620 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDN-------ENR--FSDAST-------FLPSAFGS- 246 (481)
Q Consensus 200 ~iViDE~H~~~~~----------------~~~~~~~~i~~~~~~~~-------~~~--~~~~~~-------~~~~~~~~- 246 (481)
++|+||+|.++-+ ........+...+.... ... +.+.+. .....+..
T Consensus 202 ~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~ 281 (790)
T PRK09200 202 YAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLE 281 (790)
T ss_pred eEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChh
Confidence 9999999975321 12222223332221110 000 000000 00000000
Q ss_pred -----------chh---hhhc----------cc-----cccCCCCCC---------------------------------
Q 011620 247 -----------LKT---IRRC----------GV-----ERGFKDKPY--------------------------------- 264 (481)
Q Consensus 247 -----------~~~---~~~~----------~~-----~~~~~~~~~--------------------------------- 264 (481)
+.. .... .+ .+.+....|
T Consensus 282 ~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr 361 (790)
T PRK09200 282 HQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFR 361 (790)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHH
Confidence 000 0000 00 000000000
Q ss_pred cceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHh--cCCCcEEEEcCCc
Q 011620 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV 342 (481)
Q Consensus 265 ~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~ 342 (481)
....+.+||+|.......+.. .++..++......+........ .+......|...+...+.. ..+.++||||++.
T Consensus 362 ~Y~kl~GmTGTa~t~~~e~~~--~Y~l~v~~IPt~kp~~r~d~~~-~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~ 438 (790)
T PRK09200 362 MFPKLSGMTGTAKTEEKEFFE--VYNMEVVQIPTNRPIIRIDYPD-KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSI 438 (790)
T ss_pred HhHHHhccCCCChHHHHHHHH--HhCCcEEECCCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 000134566665332222222 1222222222222222211111 2233445677777777754 3577999999999
Q ss_pred hhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCC---CCCC-----EEEEecCCC
Q 011620 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV---EGVN-----NVVNYDKPA 414 (481)
Q Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi---~~~~-----~vI~~~~p~ 414 (481)
..++.++..|.+.+ +++..+|+.+...++..+...++.| .|+|||+++++|+|+ |++. +||+++.|.
T Consensus 439 ~~se~l~~~L~~~g---i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~ 513 (790)
T PRK09200 439 EQSETFSKLLDEAG---IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERME 513 (790)
T ss_pred HHHHHHHHHHHHCC---CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCC
Confidence 99999999999877 8999999999888877777776665 799999999999999 6888 999999999
Q ss_pred ChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 415 s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
|...|.||+||+||.|.+|.++.|++..+.
T Consensus 514 s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 514 SRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred CHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 999999999999999999999999997654
No 74
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=6.8e-32 Score=265.53 Aligned_cols=344 Identities=20% Similarity=0.219 Sum_probs=242.8
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc------cCCccEEEEcccHHHHHHHHH
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVKD 119 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~------~~~~~~lil~P~~~L~~q~~~ 119 (481)
++|..++..|.++++.+++ .+.+++|+||||+|||..|++.|+..+.... ..+.+++|++|.++|+..+.+
T Consensus 106 f~f~~fN~iQS~vFp~aY~---SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYK---SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhc---CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 6888999999999988775 5689999999999999999999999887521 246789999999999999999
Q ss_pred HHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCC--CcccCC
Q 011620 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR--GFTLEH 197 (481)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~--~~~~~~ 197 (481)
.+.+-+...|+.|..++|+....+... ..++|+|+|||++--.-.+.. .-.++.
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~tei------------------------~~tqiiVTTPEKwDvvTRk~~~d~~l~~~ 238 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTEI------------------------ADTQIIVTTPEKWDVVTRKSVGDSALFSL 238 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHHH------------------------HhcCEEEecccceeeeeeeeccchhhhhh
Confidence 998888888999999999987665421 235999999999854433322 223677
Q ss_pred ccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEe
Q 011620 198 LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277 (481)
Q Consensus 198 ~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~ 277 (481)
+.+||+||+|.+ .+..+..++.|+..+...-. .. -..++++++|||++
T Consensus 239 V~LviIDEVHlL-hd~RGpvlEtiVaRtlr~ve--------------ss-----------------qs~IRivgLSATlP 286 (1230)
T KOG0952|consen 239 VRLVIIDEVHLL-HDDRGPVLETIVARTLRLVE--------------SS-----------------QSMIRIVGLSATLP 286 (1230)
T ss_pred eeeEEeeeehhh-cCcccchHHHHHHHHHHHHH--------------hh-----------------hhheEEEEeeccCC
Confidence 899999999965 66667888888776642110 00 02348999999997
Q ss_pred cCcccccccccCCce---eeecCCccccCCcccccceecccCC---CcHH-----HHHHHHHhc-CCCcEEEEcCCchhH
Q 011620 278 QDPNKLAQLDLHHPL---FLTTGETRYKLPERLESYKLICESK---LKPL-----YLVALLQSL-GEEKCIVFTSSVEST 345 (481)
Q Consensus 278 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~-----~l~~~l~~~-~~~~~lVf~~s~~~~ 345 (481)
+-.+...+.....+. .+..... +..+...+...... .+.. .....++.. ++..++|||.++...
T Consensus 287 N~eDvA~fL~vn~~~glfsFd~~yR----PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~T 362 (1230)
T KOG0952|consen 287 NYEDVARFLRVNPYAGLFSFDQRYR----PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNET 362 (1230)
T ss_pred CHHHHHHHhcCCCccceeeeccccc----ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHH
Confidence 554444433332111 1111112 22222222222211 1111 112222222 467999999999998
Q ss_pred HHHHHHHhhcCC-----------c--c-------eEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCC
Q 011620 346 HRLCTLLNHFGE-----------L--R-------IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405 (481)
Q Consensus 346 ~~l~~~l~~~~~-----------~--~-------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~ 405 (481)
.+.++.|.+... . + ....++|+++...+|....+.|+.|..+||+||..+.-|+++| ..
T Consensus 363 i~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLP-A~ 441 (1230)
T KOG0952|consen 363 IRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLP-AY 441 (1230)
T ss_pred HHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCc-ce
Confidence 888888865311 0 1 3467899999999999999999999999999999999999999 45
Q ss_pred EEEEecCC-----------CChhhHHHHHhhhhcCC--CCCcEEEEEeCCcchhhhhhccc
Q 011620 406 NVVNYDKP-----------AYIKTYIHRAGRTARAG--QLGRCFTLLHKDEVCLVGCLTPL 453 (481)
Q Consensus 406 ~vI~~~~p-----------~s~~~~~Q~~GR~~R~~--~~g~~i~~~~~~~~~~~~~i~~~ 453 (481)
+||+-+.+ ...-+.+|.+|||||.. ..|.++++.+.+-...+..+...
T Consensus 442 aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~ 502 (1230)
T KOG0952|consen 442 AVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTG 502 (1230)
T ss_pred EEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcC
Confidence 55554322 23557899999999954 46778888777666666655443
No 75
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=5e-32 Score=275.35 Aligned_cols=340 Identities=22% Similarity=0.312 Sum_probs=249.1
Q ss_pred HHHHHHH-HcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 011620 38 RLKVALQ-NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 38 ~~~~~l~-~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q 116 (481)
.....+. .||...+|+-|.+|+..++. |++.+|.+|||.||+++|.+|++- .++-++||.|...|.+.
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQlPA~l-------~~gitvVISPL~SLm~D 319 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQLPALL-------LGGVTVVISPLISLMQD 319 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHc----CCceEEEeecCCceeeEeeccccc-------cCCceEEeccHHHHHHH
Confidence 3444454 48999999999999998776 999999999999999999998862 23369999999999886
Q ss_pred HHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhcc---CCcEEEeCChhHHHhhhcCC-C
Q 011620 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS---AVDILVATPGRLMDHINATR-G 192 (481)
Q Consensus 117 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~I~v~T~~~l~~~l~~~~-~ 192 (481)
+...+.. .++....+.++......... ++.+.. ..+|+..||+++...-.... .
T Consensus 320 Qv~~L~~----~~I~a~~L~s~q~~~~~~~i------------------~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~ 377 (941)
T KOG0351|consen 320 QVTHLSK----KGIPACFLSSIQTAAERLAI------------------LQKLANGNPIIKILYVTPEKVVASEGLLESL 377 (941)
T ss_pred HHHhhhh----cCcceeeccccccHHHHHHH------------------HHHHhCCCCeEEEEEeCHHHhhcccchhhHH
Confidence 5555533 38889999888776554322 222322 37899999998865332111 1
Q ss_pred cccCC---ccEEEEecchhhhhHh--HHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcce
Q 011620 193 FTLEH---LCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (481)
Q Consensus 193 ~~~~~---~~~iViDE~H~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (481)
..+.. +.++||||||.....+ |+.....+..+.. .++..
T Consensus 378 ~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~------------------------------------~~~~v 421 (941)
T KOG0351|consen 378 ADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRI------------------------------------RFPGV 421 (941)
T ss_pred HhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHh------------------------------------hCCCC
Confidence 12333 7899999999874432 1111111111111 01335
Q ss_pred eeEEEeEEEecCccc--ccccccCCceeeecCCccccCCcccccceecccC-CCcHHHHHHHH-HhcCCCcEEEEcCCch
Q 011620 268 VKMVLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVALL-QSLGEEKCIVFTSSVE 343 (481)
Q Consensus 268 ~~i~~Sat~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l-~~~~~~~~lVf~~s~~ 343 (481)
+++.+|||.+..+.. +....+.++.+.........+ .+.+.... ......+...+ .......+||+|.++.
T Consensus 422 P~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL-----~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~ 496 (941)
T KOG0351|consen 422 PFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNL-----KYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRK 496 (941)
T ss_pred CeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCc-----eEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcc
Confidence 789999998766554 344555566654443333222 12222222 12222222333 3446779999999999
Q ss_pred hHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHH
Q 011620 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423 (481)
Q Consensus 344 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~ 423 (481)
+++.+...|.+.+ .....||++|++.+|..+.+.|..++++|++||=++++|||-|+++.||+|+.|.|...|.|-+
T Consensus 497 ~ce~vs~~L~~~~---~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~ 573 (941)
T KOG0351|consen 497 ECEQVSAVLRSLG---KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEA 573 (941)
T ss_pred hHHHHHHHHHHhc---hhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhc
Confidence 9999999999887 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCcEEEEEeCCcchhhhhhcccc
Q 011620 424 GRTARAGQLGRCFTLLHKDEVCLVGCLTPLL 454 (481)
Q Consensus 424 GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~ 454 (481)
|||||.|....|++|++..|...+..+...-
T Consensus 574 GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 574 GRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred cccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 9999999999999999999888888776655
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=8.9e-31 Score=247.43 Aligned_cols=314 Identities=18% Similarity=0.183 Sum_probs=191.1
Q ss_pred hhHHHHHhhhCCCCCCC--CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc----
Q 011620 54 VQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA---- 127 (481)
Q Consensus 54 ~Q~~a~~~~~~~~~~~~--~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~---- 127 (481)
+|.++++.+.+ ++ .+++.+|||+|||.+++++++. .+.+++|++|+++|+.|+++.+..+...
T Consensus 1 hQ~~~~~~~~~----~~~~~~~i~apTGsGKT~~~~~~~l~-------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQS----KDADIIFNTAPTGAGKTLAWLTPLLH-------GENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHc----CCCCEEEEECCCCCCHHHHHHHHHHH-------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 69999998876 54 4788999999999999998874 1236899999999999999998887643
Q ss_pred cCceEEEeecCCchHHHHHHhh-hcCccccCccCCchhHHHh-hccCCcEEEeCChhHHHhhhcC---CC----cccCCc
Q 011620 128 VGLSVGLAVGQSSIADEISELI-KRPKLEAGICYDPEDVLQE-LQSAVDILVATPGRLMDHINAT---RG----FTLEHL 198 (481)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~I~v~T~~~l~~~l~~~---~~----~~~~~~ 198 (481)
.+..+..+.|....+ ..... .......+... .....+. ....+.|++|||+.|..++... +. ..+.++
T Consensus 70 ~~~~v~~~~g~~~~d--~~~~~~~~~~~~~g~~~-~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 70 RDVNLLHVSKATLKD--IKEYANDKVGSSKGEKL-YNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCceEEEecCCchHH--HHHhhhhhcccCccchh-hhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 245666666652221 11110 00000000000 0001111 2346899999999998765431 11 125689
Q ss_pred cEEEEecchhhhhHhHHhHH--HHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEE
Q 011620 199 CYLVVDETDRLLREAYQAWL--PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276 (481)
Q Consensus 199 ~~iViDE~H~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~ 276 (481)
++||+||+|.+......... ........... ...+++++|||+
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~-----------------------------------~~~~~i~lSAT~ 191 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFE-----------------------------------CRRKFVFLSATP 191 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHHHHHHhhh-----------------------------------cCCcEEEEecCC
Confidence 99999999987432211111 01111110000 123899999999
Q ss_pred ecCcccccccc--cCCceeeecCCc--c---c----cCC--------cccccceecccCCCcHHHHH---HHH----Hhc
Q 011620 277 TQDPNKLAQLD--LHHPLFLTTGET--R---Y----KLP--------ERLESYKLICESKLKPLYLV---ALL----QSL 330 (481)
Q Consensus 277 ~~~~~~~~~~~--~~~~~~~~~~~~--~---~----~~~--------~~~~~~~~~~~~~~k~~~l~---~~l----~~~ 330 (481)
++......... ...+.....+.. . + ... ..+...... ....+...+. ..+ ++.
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~ 270 (357)
T TIGR03158 192 DPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQL 270 (357)
T ss_pred CHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhcc
Confidence 76544433322 222322222220 0 0 000 112221211 2222222222 222 223
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEe
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~ 410 (481)
.++++||||+++..++.++..|++.+ .+..+..+||.+++.+|... ++.+|||||+++++|+|+|.. +|| +
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~-~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~ 341 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQG-LGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-F 341 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhC-CCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-E
Confidence 56799999999999999999998753 22577889999999887643 478999999999999999976 555 4
Q ss_pred cCCCChhhHHHHHhhhh
Q 011620 411 DKPAYIKTYIHRAGRTA 427 (481)
Q Consensus 411 ~~p~s~~~~~Q~~GR~~ 427 (481)
+ |.+...|+||+||+|
T Consensus 342 ~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 342 S-ARDAAAFWQRLGRLG 357 (357)
T ss_pred C-CCCHHHHhhhcccCC
Confidence 5 889999999999986
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.2e-30 Score=257.03 Aligned_cols=357 Identities=18% Similarity=0.190 Sum_probs=229.6
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
+|+ .|++.|.-+...+ .+..+.+++||+|||+++.+|+.-.... |..+.|++||..|+.|.++++.++.
T Consensus 53 lg~-~p~~vQlig~~~l------~~G~Iaem~TGeGKTLva~lpa~l~aL~----G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIAL------HKGKIAEMKTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhh------cCCceeeecCCCccHHHHHHHHHHHHHh----CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 464 7888887665433 3344999999999999999998533333 2359999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-HHhhhcCC-----CcccCCcc
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~~-----~~~~~~~~ 199 (481)
..+|+++.++.|+........ ...++|+++||..| .+++.... ...+..+.
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~-----------------------~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~ 178 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERRE-----------------------AYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFH 178 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHH-----------------------hcCCCEEEECCCchhhHHHhcccccchhhhhccccc
Confidence 999999999999877543321 13469999999999 77776532 24578899
Q ss_pred EEEEecchhhhhHhHH----------------hHHHHHHHhcccC--------ccc-cccccc-----cc--ccccccc-
Q 011620 200 YLVVDETDRLLREAYQ----------------AWLPTVLQLTRSD--------NEN-RFSDAS-----TF--LPSAFGS- 246 (481)
Q Consensus 200 ~iViDE~H~~~~~~~~----------------~~~~~i~~~~~~~--------~~~-~~~~~~-----~~--~~~~~~~- 246 (481)
++|+||+|.++-+.-. .....+...+... .+. .+.+.+ .. ....+..
T Consensus 179 ~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~ 258 (745)
T TIGR00963 179 FAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLE 258 (745)
T ss_pred eeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChh
Confidence 9999999986542111 1111111111100 000 000000 00 0000000
Q ss_pred -----------ch---hhhhc----------cc-----cccCCCCCC---------------------------------
Q 011620 247 -----------LK---TIRRC----------GV-----ERGFKDKPY--------------------------------- 264 (481)
Q Consensus 247 -----------~~---~~~~~----------~~-----~~~~~~~~~--------------------------------- 264 (481)
+. ..... .+ .+.+....|
T Consensus 259 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr 338 (745)
T TIGR00963 259 NSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFR 338 (745)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHh
Confidence 00 00000 00 000000000
Q ss_pred cceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHH--hcCCCcEEEEcCCc
Q 011620 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--SLGEEKCIVFTSSV 342 (481)
Q Consensus 265 ~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~~lVf~~s~ 342 (481)
...++.+||+|.......+...+. -.++..+... +........ .+..+...|...+...+. ...+.++||||+++
T Consensus 339 ~Y~kl~GmTGTa~te~~E~~~iY~-l~vv~IPtnk-p~~R~d~~d-~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si 415 (745)
T TIGR00963 339 LYEKLSGMTGTAKTEEEEFEKIYN-LEVVVVPTNR-PVIRKDLSD-LVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSV 415 (745)
T ss_pred hCchhhccCCCcHHHHHHHHHHhC-CCEEEeCCCC-CeeeeeCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 001245667776443333322222 2222222222 111111111 122333445555555442 33577999999999
Q ss_pred hhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCC-------CCEEEEecCCCC
Q 011620 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG-------VNNVVNYDKPAY 415 (481)
Q Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~-------~~~vI~~~~p~s 415 (481)
..++.+.+.|.+.+ +++..+|+. ..+|+..+..|..+...|+|||+++++|+||+. ..+||+++.|.|
T Consensus 416 ~~se~ls~~L~~~g---i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s 490 (745)
T TIGR00963 416 EKSELLSNLLKERG---IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHES 490 (745)
T ss_pred HHHHHHHHHHHHcC---CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCc
Confidence 99999999999887 888899998 778999999999999999999999999999987 449999999999
Q ss_pred hhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 416 ~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
...+.|+.||+||.|.+|.+..|++..|.
T Consensus 491 ~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 491 RRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 99999999999999999999999998764
No 78
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.98 E-value=1.5e-30 Score=267.18 Aligned_cols=139 Identities=20% Similarity=0.176 Sum_probs=122.4
Q ss_pred CCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHh-hcCCcceEEEEccCccChHHHHHHHHHHhcC--CceEEEecc
Q 011620 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLVSSD 393 (481)
Q Consensus 317 ~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vLi~t~ 393 (481)
..|...+..+++...+.++||||++...+..+.+.|. ..+ +.+..+||+++..+|..+++.|+++ .++|||||+
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~G---i~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd 554 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREG---IRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE 554 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccC---eeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech
Confidence 4577778888887778899999999999999999995 445 8899999999999999999999984 599999999
Q ss_pred cccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchh
Q 011620 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTS 458 (481)
Q Consensus 394 ~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~ 458 (481)
++++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+.+++..........+.+++...-
T Consensus 555 vgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 555 IGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred hhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999888887766666666666665543
No 79
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=3.3e-30 Score=246.92 Aligned_cols=330 Identities=18% Similarity=0.221 Sum_probs=237.6
Q ss_pred HHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCC--CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHH
Q 011620 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 38 ~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~--~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~ 115 (481)
.+.+.+...+| +|+..|.+++.+|..-+.+.. +=++.|..|||||.+++++++..+.. |.++.+.+||.-|+.
T Consensus 251 l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~----G~Q~ALMAPTEILA~ 325 (677)
T COG1200 251 LLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA----GYQAALMAPTEILAE 325 (677)
T ss_pred HHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc----CCeeEEeccHHHHHH
Confidence 34455566788 999999999999987665553 45899999999999999999887755 568999999999999
Q ss_pred HHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhcc-CCcEEEeCChhHHHhhhcCCCcc
Q 011620 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 116 q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~v~T~~~l~~~l~~~~~~~ 194 (481)
|.++.+.++++..|++|..+.|...-..... ....+.. ..+|+|+|.--+. ....
T Consensus 326 QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~------------------~l~~l~~G~~~ivVGTHALiQ------d~V~ 381 (677)
T COG1200 326 QHYESLRKWLEPLGIRVALLTGSLKGKARKE------------------ILEQLASGEIDIVVGTHALIQ------DKVE 381 (677)
T ss_pred HHHHHHHHHhhhcCCeEEEeecccchhHHHH------------------HHHHHhCCCCCEEEEcchhhh------ccee
Confidence 9999999999999999999999876544322 2223334 4899999955442 3356
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeE
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (481)
+.++.++|+||-|++.-...... ..... ...+.+.|||
T Consensus 382 F~~LgLVIiDEQHRFGV~QR~~L-------~~KG~-----------------------------------~~Ph~LvMTA 419 (677)
T COG1200 382 FHNLGLVIIDEQHRFGVHQRLAL-------REKGE-----------------------------------QNPHVLVMTA 419 (677)
T ss_pred ecceeEEEEeccccccHHHHHHH-------HHhCC-----------------------------------CCCcEEEEeC
Confidence 78899999999999855443211 11110 0127899999
Q ss_pred EEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHH-hc-CCCcEEEEcCCchhH-------
Q 011620 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SL-GEEKCIVFTSSVEST------- 345 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~-~~~~~lVf~~s~~~~------- 345 (481)
||-+..-.+....--+-.++ .+.+.-...+.... -...+...+.+.++ .. .+..+-|.||-+++.
T Consensus 420 TPIPRTLAlt~fgDldvS~I---dElP~GRkpI~T~~---i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~ 493 (677)
T COG1200 420 TPIPRTLALTAFGDLDVSII---DELPPGRKPITTVV---IPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQA 493 (677)
T ss_pred CCchHHHHHHHhccccchhh---ccCCCCCCceEEEE---eccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhh
Confidence 98655444332221111111 11111112222222 22233333433333 21 566889999876554
Q ss_pred -HHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCC-ChhhHHHHH
Q 011620 346 -HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRA 423 (481)
Q Consensus 346 -~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~-s~~~~~Q~~ 423 (481)
+.++..|+.. -.+.++..+||.|++.++++++++|++|+.+|||+|...+.|||+|+.+++|+.+... -.+++-|.-
T Consensus 494 a~~~~~~L~~~-~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLR 572 (677)
T COG1200 494 AEELYEELKSF-LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLR 572 (677)
T ss_pred HHHHHHHHHHH-cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhc
Confidence 4556666633 2347799999999999999999999999999999999999999999999999987543 367889999
Q ss_pred hhhhcCCCCCcEEEEEeCCcch
Q 011620 424 GRTARAGQLGRCFTLLHKDEVC 445 (481)
Q Consensus 424 GR~~R~~~~g~~i~~~~~~~~~ 445 (481)
||+||.+..++|+.++.+...+
T Consensus 573 GRVGRG~~qSyC~Ll~~~~~~~ 594 (677)
T COG1200 573 GRVGRGDLQSYCVLLYKPPLSE 594 (677)
T ss_pred cccCCCCcceEEEEEeCCCCCh
Confidence 9999999999999999987743
No 80
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.97 E-value=1.6e-30 Score=232.83 Aligned_cols=288 Identities=25% Similarity=0.369 Sum_probs=212.5
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhcccc---CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEE
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAV---GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v 177 (481)
.+..+|+-|+++|++|.++.+++|-... .++..+..|+.....+... +..+.+|+|
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~q---------------------l~~g~~ivv 344 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQ---------------------LKDGTHIVV 344 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHH---------------------hhcCceeee
Confidence 3679999999999999999877775433 2333455555555544433 456789999
Q ss_pred eCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccc
Q 011620 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (481)
Q Consensus 178 ~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (481)
+||.++...+.+ +.+.+..+.++|+||++.++...+.+.+..+...++..+.+-
T Consensus 345 GtpgRl~~~is~-g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg------------------------- 398 (725)
T KOG0349|consen 345 GTPGRLLQPISK-GLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDG------------------------- 398 (725)
T ss_pred cCchhhhhhhhc-cceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCC-------------------------
Confidence 999999999887 557788999999999999999888888888777666544321
Q ss_pred cCCCCCCcceeeEEEeEEEecC-cccccccccCCceeeecCCccccCCcccccceecc----------------------
Q 011620 258 GFKDKPYPRLVKMVLSATLTQD-PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC---------------------- 314 (481)
Q Consensus 258 ~~~~~~~~~~~~i~~Sat~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 314 (481)
++.+.++.|||+..- +.......+.-|..+.....+ .+++.++++....
T Consensus 399 -------~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~ 470 (725)
T KOG0349|consen 399 -------FRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHT 470 (725)
T ss_pred -------cccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccceeecCCccCccHHHHhhhhccCCccc
Confidence 345788899998622 222222333333333222111 1122222211000
Q ss_pred --------cCC---------CcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHH
Q 011620 315 --------ESK---------LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377 (481)
Q Consensus 315 --------~~~---------~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~ 377 (481)
.+. -|.++-...++...-.++||||.+...++.+.+++.+.+..-+.+..+|++..+.+|.+.
T Consensus 471 kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~n 550 (725)
T KOG0349|consen 471 KDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKAN 550 (725)
T ss_pred ccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHH
Confidence 001 112222333444556799999999999999999999988777899999999999999999
Q ss_pred HHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCc
Q 011620 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (481)
Q Consensus 378 ~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 443 (481)
++.|+.++.+.||||+.+.+|+||.++.++|+..+|....+|.+|+||+||..+-|.++.++-...
T Consensus 551 le~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ 616 (725)
T KOG0349|consen 551 LESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVP 616 (725)
T ss_pred HHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccc
Confidence 999999999999999999999999999999999999999999999999999988899888876443
No 81
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=228.80 Aligned_cols=350 Identities=19% Similarity=0.278 Sum_probs=250.1
Q ss_pred CCCCCCCCCCHHHHHHHHH-cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEE
Q 011620 27 CPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105 (481)
Q Consensus 27 ~~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~l 105 (481)
-.-+.+| ++.+..+.|++ |.+..+||.|.++++.... +.++++..|||.||+++|.+|++. . ....|
T Consensus 71 wdkd~fp-ws~e~~~ilk~~f~lekfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlpal~------a-dg~al 138 (695)
T KOG0353|consen 71 WDKDDFP-WSDEAKDILKEQFHLEKFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLPALC------A-DGFAL 138 (695)
T ss_pred cccCCCC-CchHHHHHHHHHhhHHhcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhhHHh------c-CCceE
Confidence 3455566 88999999976 8899999999999988876 999999999999999999999874 2 23699
Q ss_pred EEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHH
Q 011620 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD 185 (481)
Q Consensus 106 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~ 185 (481)
|+||...|++.+.-.++.+ |+....+....+..+..+.- .....-.....++..||+.+..
T Consensus 139 vi~plislmedqil~lkql----gi~as~lnansske~~k~v~---------------~~i~nkdse~kliyvtpekiak 199 (695)
T KOG0353|consen 139 VICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVE---------------AAITNKDSEFKLIYVTPEKIAK 199 (695)
T ss_pred eechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHH---------------HHHcCCCceeEEEEecHHHHHH
Confidence 9999999999877788777 77666666665554432110 0000011336789999997743
Q ss_pred ------hhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccC
Q 011620 186 ------HINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (481)
Q Consensus 186 ------~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
.+.+ .+....+.+|.+||+|.....+ ..+..-+..+..+
T Consensus 200 sk~~mnklek--a~~~~~~~~iaidevhccsqwg------------------------hdfr~dy~~l~il--------- 244 (695)
T KOG0353|consen 200 SKKFMNKLEK--ALEAGFFKLIAIDEVHCCSQWG------------------------HDFRPDYKALGIL--------- 244 (695)
T ss_pred HHHHHHHHHH--HhhcceeEEEeecceeehhhhC------------------------cccCcchHHHHHH---------
Confidence 2222 2334557899999999763322 1111111111111
Q ss_pred CCCCCcceeeEEEeEEEecCccccccc--ccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHH----hcCCC
Q 011620 260 KDKPYPRLVKMVLSATLTQDPNKLAQL--DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ----SLGEE 333 (481)
Q Consensus 260 ~~~~~~~~~~i~~Sat~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~----~~~~~ 333 (481)
...++..+++.++||-+..+-.-+.. .+.....+..+...+.+ .+.+...+....+.+.++.+ ...+.
T Consensus 245 -krqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl-----~yev~qkp~n~dd~~edi~k~i~~~f~gq 318 (695)
T KOG0353|consen 245 -KRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNL-----KYEVRQKPGNEDDCIEDIAKLIKGDFAGQ 318 (695)
T ss_pred -HHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCc-----eeEeeeCCCChHHHHHHHHHHhccccCCC
Confidence 11235667899999977554432221 12222333333333222 22333333333444444443 33567
Q ss_pred cEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCC
Q 011620 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (481)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p 413 (481)
..||||-|...++.++..|+..| +....+|..+.+.++.-+-+.|..|+++|+|+|-.+++|||-|++++||+.++|
T Consensus 319 sgiiyc~sq~d~ekva~alkn~g---i~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ 395 (695)
T KOG0353|consen 319 SGIIYCFSQKDCEKVAKALKNHG---IHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLP 395 (695)
T ss_pred cceEEEeccccHHHHHHHHHhcC---ccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccc
Confidence 89999999999999999999988 889999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHH-------------------------------------------HHhhhhcCCCCCcEEEEEeCCcchhhhhh
Q 011620 414 AYIKTYIH-------------------------------------------RAGRTARAGQLGRCFTLLHKDEVCLVGCL 450 (481)
Q Consensus 414 ~s~~~~~Q-------------------------------------------~~GR~~R~~~~g~~i~~~~~~~~~~~~~i 450 (481)
.|+.+|.| -.||+||.+.+..|++++.-.+...+..+
T Consensus 396 ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssm 475 (695)
T KOG0353|consen 396 KSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSM 475 (695)
T ss_pred hhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHH
Confidence 99999999 56999999999999999987776655544
Q ss_pred c
Q 011620 451 T 451 (481)
Q Consensus 451 ~ 451 (481)
+
T Consensus 476 v 476 (695)
T KOG0353|consen 476 V 476 (695)
T ss_pred H
Confidence 3
No 82
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=4.9e-30 Score=269.34 Aligned_cols=315 Identities=19% Similarity=0.204 Sum_probs=192.3
Q ss_pred CCCchhhHHHHHhhhCCCCCC-CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011620 49 SSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~-~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (481)
..+|+||.+|+..+.+++..+ +++++++|||||||++++..+ ..+... ....++||++|+.+|+.|+.+.|..+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~-~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKA-KRFRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhc-CccCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 358999999999888766544 679999999999999966544 444332 22348999999999999999999887432
Q ss_pred cCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcC----CCcccCCccEEEE
Q 011620 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVV 203 (481)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~----~~~~~~~~~~iVi 203 (481)
.+..+...++.....+. .......|+|+|+++|...+... ..+.+..+++||+
T Consensus 490 ~~~~~~~i~~i~~L~~~-----------------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIi 546 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDK-----------------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIV 546 (1123)
T ss_pred cccchhhhhchhhhhhh-----------------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEE
Confidence 22111111111000000 01123589999999998765321 1134678999999
Q ss_pred ecchhhhhH---------------hHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCccee
Q 011620 204 DETDRLLRE---------------AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (481)
Q Consensus 204 DE~H~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (481)
||||+.... .+......++..+. ..
T Consensus 547 DEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd----------------------------------------A~ 586 (1123)
T PRK11448 547 DEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD----------------------------------------AV 586 (1123)
T ss_pred ECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC----------------------------------------cc
Confidence 999985320 01122333333321 14
Q ss_pred eEEEeEEEecCccccccccc--------------C---CceeeecCCcc--ccC--Ccccccc-------e-ecccC---
Q 011620 269 KMVLSATLTQDPNKLAQLDL--------------H---HPLFLTTGETR--YKL--PERLESY-------K-LICES--- 316 (481)
Q Consensus 269 ~i~~Sat~~~~~~~~~~~~~--------------~---~~~~~~~~~~~--~~~--~~~~~~~-------~-~~~~~--- 316 (481)
.+++||||......+..... - .|..+...... ... ......+ . ...+.
T Consensus 587 ~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~ 666 (1123)
T PRK11448 587 KIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVD 666 (1123)
T ss_pred EEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHh
Confidence 57777777533221111000 0 01111100000 000 0000000 0 00000
Q ss_pred ------------CCcH----HHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcC-----C-cceEEEEccCccChHHH
Q 011620 317 ------------KLKP----LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-----E-LRIKIKEYSGLQRQSVR 374 (481)
Q Consensus 317 ------------~~k~----~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~-----~-~~~~~~~~~~~~~~~~r 374 (481)
.... ..+...+....++++||||.+..+|+.+++.|.+.. . ....+..++|+.+ ++
T Consensus 667 ~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~ 744 (1123)
T PRK11448 667 FEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KP 744 (1123)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--ch
Confidence 0000 011122222345799999999999999999887631 1 1224556787765 47
Q ss_pred HHHHHHHhcCCc-eEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCC
Q 011620 375 SKTLKAFREGKI-QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (481)
Q Consensus 375 ~~~~~~f~~g~~-~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~ 430 (481)
.+++++|++++. .|+|+++++.+|+|+|.+.+||+++++.|...|+|++||+.|..
T Consensus 745 ~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 745 DQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred HHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 789999999876 68999999999999999999999999999999999999999953
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=4.8e-29 Score=254.58 Aligned_cols=336 Identities=19% Similarity=0.201 Sum_probs=206.7
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (481)
..|||+|..+... . ....-++|.+|||+|||.+++..+...+..+. ..+++|+.||.++++|+++.+..+....
T Consensus 285 ~~p~p~Q~~~~~~-~---~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~--~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 285 YQPRQLQTLVDAL-P---LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL--ADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCChHHHHHHHhh-c---cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC--CCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 4899999877432 1 12456899999999999998886664443322 3369999999999999999987644321
Q ss_pred --CceEEEeecCCchHHHHHHhhhcCccccCccCCch--hHHHh-hcc---CCcEEEeCChhHHHhhhcCCCcccCCc--
Q 011620 129 --GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE--DVLQE-LQS---AVDILVATPGRLMDHINATRGFTLEHL-- 198 (481)
Q Consensus 129 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~---~~~I~v~T~~~l~~~l~~~~~~~~~~~-- 198 (481)
..++...+|.......................... ..|-. ..+ -..|+|||.++++......+...+..+
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 35688888877654433222211100000000000 01111 111 268999999999866554332222223
Q ss_pred --cEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEE
Q 011620 199 --CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276 (481)
Q Consensus 199 --~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~ 276 (481)
++|||||+|.+ +......+..++...... ...+|++|||+
T Consensus 439 a~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~-------------------------------------g~~vIllSATL 480 (878)
T PRK09694 439 GRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA-------------------------------------GGSVILLSATL 480 (878)
T ss_pred ccCeEEEechhhC-CHHHHHHHHHHHHHHHhc-------------------------------------CCcEEEEeCCC
Confidence 48999999976 555555666666654321 12689999999
Q ss_pred ecCcccc-cccccCC---------ceeeecCC---ccccCCcc----cccceecc-----cCCCc-HHHHHHHHHh-cCC
Q 011620 277 TQDPNKL-AQLDLHH---------PLFLTTGE---TRYKLPER----LESYKLIC-----ESKLK-PLYLVALLQS-LGE 332 (481)
Q Consensus 277 ~~~~~~~-~~~~~~~---------~~~~~~~~---~~~~~~~~----~~~~~~~~-----~~~~k-~~~l~~~l~~-~~~ 332 (481)
+...... ...+... |.+..... ........ .....+.. ..... ...+..+++. ..+
T Consensus 481 P~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g 560 (878)
T PRK09694 481 PATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAG 560 (878)
T ss_pred CHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcC
Confidence 7554432 1111000 11000000 00000000 00000101 11111 2233333332 356
Q ss_pred CcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHH----HHHHHHH-hcCC---ceEEEecccccccCCCCCC
Q 011620 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR----SKTLKAF-REGK---IQVLVSSDAMTRGMDVEGV 404 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r----~~~~~~f-~~g~---~~vLi~t~~l~~Gidi~~~ 404 (481)
++++||||+++.++.+++.|++....+..+..+|+.++..+| +++++.| ++|+ ..|||+|++++.|+|+ ++
T Consensus 561 ~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~ 639 (878)
T PRK09694 561 AQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DF 639 (878)
T ss_pred CEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CC
Confidence 789999999999999999998764444679999999999988 4567788 5665 4799999999999999 58
Q ss_pred CEEEEecCCCChhhHHHHHhhhhcCCC
Q 011620 405 NNVVNYDKPAYIKTYIHRAGRTARAGQ 431 (481)
Q Consensus 405 ~~vI~~~~p~s~~~~~Q~~GR~~R~~~ 431 (481)
+++|....| .+.++||+||++|.+.
T Consensus 640 DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 640 DWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CeEEECCCC--HHHHHHHHhccCCCCC
Confidence 888887777 7899999999999765
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=1.1e-28 Score=250.55 Aligned_cols=329 Identities=20% Similarity=0.229 Sum_probs=213.3
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
.|+++|.+|++.+.+.. ..+++++.++||+|||.+|+.++...+.. +.+++|++|+++|+.|+.+.+++.. +
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~----g~~vLvLvPt~~L~~Q~~~~l~~~f---g 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ----GKQALVLVPEIALTPQMLARFRARF---G 215 (679)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---C
Confidence 69999999999988643 34779999999999999998877766643 4479999999999999999998753 6
Q ss_pred ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhc-cCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh
Q 011620 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~ 208 (481)
..+..++|+.+..+... .|..+. ..++|+|+|+..+. ..+.++++||+||+|.
T Consensus 216 ~~v~~~~s~~s~~~r~~------------------~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~ 269 (679)
T PRK05580 216 APVAVLHSGLSDGERLD------------------EWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHD 269 (679)
T ss_pred CCEEEEECCCCHHHHHH------------------HHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCc
Confidence 78889998877655432 222232 44799999987663 3467899999999996
Q ss_pred hhhHhH---HhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccc
Q 011620 209 LLREAY---QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (481)
Q Consensus 209 ~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~ 285 (481)
..-... ......+...... ....+++++|||++........
T Consensus 270 ~s~~~~~~p~y~~r~va~~ra~------------------------------------~~~~~~il~SATps~~s~~~~~ 313 (679)
T PRK05580 270 SSYKQQEGPRYHARDLAVVRAK------------------------------------LENIPVVLGSATPSLESLANAQ 313 (679)
T ss_pred cccccCcCCCCcHHHHHHHHhh------------------------------------ccCCCEEEEcCCCCHHHHHHHh
Confidence 532111 0011111110000 1234789999998644433332
Q ss_pred cccCCceeeecCCccccCCcccccceecc--cC---CCcHHHHHHHHHhc--CCCcEEEEcCCch---------------
Q 011620 286 LDLHHPLFLTTGETRYKLPERLESYKLIC--ES---KLKPLYLVALLQSL--GEEKCIVFTSSVE--------------- 343 (481)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~k~~~l~~~l~~~--~~~~~lVf~~s~~--------------- 343 (481)
.+................+. +....... .. ..-...+...+++. .++++|||+|.+.
T Consensus 314 ~g~~~~~~l~~r~~~~~~p~-v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~ 392 (679)
T PRK05580 314 QGRYRLLRLTKRAGGARLPE-VEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAE 392 (679)
T ss_pred ccceeEEEeccccccCCCCe-EEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccC
Confidence 21111111111111111111 00000000 00 01112333333322 3457888876531
Q ss_pred ---------------------------------------------hHHHHHHHHhhcCCcceEEEEccCccCh--HHHHH
Q 011620 344 ---------------------------------------------STHRLCTLLNHFGELRIKIKEYSGLQRQ--SVRSK 376 (481)
Q Consensus 344 ---------------------------------------------~~~~l~~~l~~~~~~~~~~~~~~~~~~~--~~r~~ 376 (481)
.++++++.|.+.- .+.++..+|+++.. .+++.
T Consensus 393 C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f-p~~~v~~~~~d~~~~~~~~~~ 471 (679)
T PRK05580 393 CPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF-PEARILRIDRDTTRRKGALEQ 471 (679)
T ss_pred CCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC-CCCcEEEEeccccccchhHHH
Confidence 3456666666542 23678889998864 57889
Q ss_pred HHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCC--C----------hhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA--Y----------IKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 377 ~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~--s----------~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
+++.|++|+.+|||+|+++..|+|+|++++|++++.+. + ...|.|++||+||.+..|.+++.....+.
T Consensus 472 ~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~ 551 (679)
T PRK05580 472 LLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEH 551 (679)
T ss_pred HHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCC
Confidence 99999999999999999999999999999997766442 2 25789999999999889999987766655
Q ss_pred hhhhhh
Q 011620 445 CLVGCL 450 (481)
Q Consensus 445 ~~~~~i 450 (481)
..+..+
T Consensus 552 ~~~~~~ 557 (679)
T PRK05580 552 PVIQAL 557 (679)
T ss_pred HHHHHH
Confidence 555543
No 85
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=6e-28 Score=244.27 Aligned_cols=322 Identities=18% Similarity=0.196 Sum_probs=242.4
Q ss_pred HHHHcCCCCCchhhHHHHHhhhCCCCCCC--CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHH
Q 011620 42 ALQNMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (481)
Q Consensus 42 ~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~--~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~ 119 (481)
.-..|+| .-++-|..|++++.+-+.+++ |=+|||..|-|||-+++-++...++.+ .+|.|++||.-|++|.++
T Consensus 587 F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G----KQVAvLVPTTlLA~QHy~ 661 (1139)
T COG1197 587 FEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG----KQVAVLVPTTLLAQQHYE 661 (1139)
T ss_pred HHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC----CeEEEEcccHHhHHHHHH
Confidence 3345777 889999999999987666664 679999999999999999888887664 489999999999999999
Q ss_pred HHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhc-cCCcEEEeCChhHHHhhhcCCCcccCCc
Q 011620 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHL 198 (481)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~~~~~~~~ 198 (481)
.|+.-....++++..+..-.+..++... ...+. +..||+|+|..-| . +.+.++++
T Consensus 662 tFkeRF~~fPV~I~~LSRF~s~kE~~~i------------------l~~la~G~vDIvIGTHrLL----~--kdv~FkdL 717 (1139)
T COG1197 662 TFKERFAGFPVRIEVLSRFRSAKEQKEI------------------LKGLAEGKVDIVIGTHRLL----S--KDVKFKDL 717 (1139)
T ss_pred HHHHHhcCCCeeEEEecccCCHHHHHHH------------------HHHHhcCCccEEEechHhh----C--CCcEEecC
Confidence 9998888788888887655444433221 12233 4489999995433 3 34678899
Q ss_pred cEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEec
Q 011620 199 CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ 278 (481)
Q Consensus 199 ~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~ 278 (481)
+++||||-|++.-.. .+.+..+. ..+.++-+||||-+
T Consensus 718 GLlIIDEEqRFGVk~-KEkLK~Lr------------------------------------------~~VDvLTLSATPIP 754 (1139)
T COG1197 718 GLLIIDEEQRFGVKH-KEKLKELR------------------------------------------ANVDVLTLSATPIP 754 (1139)
T ss_pred CeEEEechhhcCccH-HHHHHHHh------------------------------------------ccCcEEEeeCCCCc
Confidence 999999999974322 22222222 23378999999987
Q ss_pred CcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHH-HH-hcCCCcEEEEcCCchhHHHHHHHHhhcC
Q 011620 279 DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL-LQ-SLGEEKCIVFTSSVESTHRLCTLLNHFG 356 (481)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~-l~-~~~~~~~lVf~~s~~~~~~l~~~l~~~~ 356 (481)
..-.+.-.++.+..++.+.... .-.++.+....+ ...+.+. ++ -.+++.+-..+|.++..+.+++.|++.-
T Consensus 755 RTL~Msm~GiRdlSvI~TPP~~---R~pV~T~V~~~d----~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LV 827 (1139)
T COG1197 755 RTLNMSLSGIRDLSVIATPPED---RLPVKTFVSEYD----DLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELV 827 (1139)
T ss_pred chHHHHHhcchhhhhccCCCCC---CcceEEEEecCC----hHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhC
Confidence 7777766666666555443332 111122222221 2223322 22 2367888888999999999999999874
Q ss_pred CcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCC-CChhhHHHHHhhhhcCCCCCcE
Q 011620 357 ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAGQLGRC 435 (481)
Q Consensus 357 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p-~s~~~~~Q~~GR~~R~~~~g~~ 435 (481)
+..++.+.||.|+..+-+.++..|.+|+.+|||||.+.+.|||+|+++.+|+.+.. .-.+++.|.-||+||.++.++|
T Consensus 828 -PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYA 906 (1139)
T COG1197 828 -PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYA 906 (1139)
T ss_pred -CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEE
Confidence 34689999999999999999999999999999999999999999999999987754 3478999999999999999999
Q ss_pred EEEEeCCc
Q 011620 436 FTLLHKDE 443 (481)
Q Consensus 436 i~~~~~~~ 443 (481)
+.++.+..
T Consensus 907 Yfl~p~~k 914 (1139)
T COG1197 907 YFLYPPQK 914 (1139)
T ss_pred EEeecCcc
Confidence 99988644
No 86
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=3.8e-28 Score=211.79 Aligned_cols=324 Identities=20% Similarity=0.201 Sum_probs=217.8
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
++++.|..|-+.++..+...++.+|+|-||+|||.+..-.+...+. .|.++.+++|+..-+.+++..++.... +
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~----~G~~vciASPRvDVclEl~~Rlk~aF~--~ 170 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN----QGGRVCIASPRVDVCLELYPRLKQAFS--N 170 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh----cCCeEEEecCcccchHHHHHHHHHhhc--c
Confidence 8999999999999988888899999999999999986655554443 355899999999999999999887755 4
Q ss_pred ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhh
Q 011620 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~ 209 (481)
..+..++|++..... ..++|+|.++|+++-.. ++++|+||+|.+
T Consensus 171 ~~I~~Lyg~S~~~fr----------------------------~plvVaTtHQLlrFk~a--------FD~liIDEVDAF 214 (441)
T COG4098 171 CDIDLLYGDSDSYFR----------------------------APLVVATTHQLLRFKQA--------FDLLIIDEVDAF 214 (441)
T ss_pred CCeeeEecCCchhcc----------------------------ccEEEEehHHHHHHHhh--------ccEEEEeccccc
Confidence 567778887653221 37999999999887543 789999999986
Q ss_pred hhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccC
Q 011620 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (481)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~ 289 (481)
.-.. ...+......... ..-..+++|||++.....-....-.
T Consensus 215 P~~~-d~~L~~Av~~ark-------------------------------------~~g~~IylTATp~k~l~r~~~~g~~ 256 (441)
T COG4098 215 PFSD-DQSLQYAVKKARK-------------------------------------KEGATIYLTATPTKKLERKILKGNL 256 (441)
T ss_pred cccC-CHHHHHHHHHhhc-------------------------------------ccCceEEEecCChHHHHHHhhhCCe
Confidence 2211 1111111221111 1125799999998655543332222
Q ss_pred CceeeecCCccccCCcccccceeccc------CCCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceE
Q 011620 290 HPLFLTTGETRYKLPERLESYKLICE------SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361 (481)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~ 361 (481)
....+........++ +..+.+... ...-...+...++.. .+.+++||+++++.++.++..|++.-+ ...
T Consensus 257 ~~~klp~RfH~~pLp--vPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~-~~~ 333 (441)
T COG4098 257 RILKLPARFHGKPLP--VPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLP-KET 333 (441)
T ss_pred eEeecchhhcCCCCC--CCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCC-ccc
Confidence 222222222222221 112222211 111222455555543 356999999999999999999955321 245
Q ss_pred EEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCC--CChhhHHHHHhhhhcC-CCCCcEEEE
Q 011620 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--AYIKTYIHRAGRTARA-GQLGRCFTL 438 (481)
Q Consensus 362 ~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p--~s~~~~~Q~~GR~~R~-~~~g~~i~~ 438 (481)
+..+|+.. ..|.+.+++|++|+.++||+|.++++|+.+|++++.|.-.-. .+.+.++|..||+||. .++..-++|
T Consensus 334 i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~F 411 (441)
T COG4098 334 IASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLF 411 (441)
T ss_pred eeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEE
Confidence 56777653 459999999999999999999999999999999987754332 5678899999999994 344445566
Q ss_pred EeCCcchhhhhhcccccchh
Q 011620 439 LHKDEVCLVGCLTPLLLCTS 458 (481)
Q Consensus 439 ~~~~~~~~~~~i~~~~~~~~ 458 (481)
+..+-...+.+..+-+++.+
T Consensus 412 FH~G~skaM~~A~keIk~MN 431 (441)
T COG4098 412 FHYGKSKAMKQARKEIKEMN 431 (441)
T ss_pred EeccchHHHHHHHHHHHHHH
Confidence 66655555544444443333
No 87
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=4.9e-28 Score=241.60 Aligned_cols=355 Identities=20% Similarity=0.232 Sum_probs=249.1
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc-------CCccEEE
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-------RCLRALV 106 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~-------~~~~~li 106 (481)
.+++|-..++. |..++++.|......++. ...++++|||||+|||-.+++.+++.+..+.. ...+++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~---~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVY 369 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALR---GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVY 369 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhc---CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEE
Confidence 36666666554 455799999988776654 45789999999999999999999999877643 3457999
Q ss_pred EcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHh
Q 011620 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (481)
Q Consensus 107 l~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~ 186 (481)
++|.++|++.|...|.+.....|+.|...+|+........ ++..|+||||+.+--.
T Consensus 370 IAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi------------------------eeTqVIV~TPEK~DiI 425 (1674)
T KOG0951|consen 370 IAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI------------------------EETQVIVTTPEKWDII 425 (1674)
T ss_pred EeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh------------------------hcceeEEeccchhhhh
Confidence 9999999999999999999999999999999977554421 3458999999998554
Q ss_pred hhcCCCcc-cCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCc
Q 011620 187 INATRGFT-LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (481)
Q Consensus 187 l~~~~~~~-~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (481)
-.+.+... ..-++++|+||.|.+ .+..+..++.+...+....... -.
T Consensus 426 TRk~gdraY~qlvrLlIIDEIHLL-hDdRGpvLESIVaRt~r~ses~-------------------------------~e 473 (1674)
T KOG0951|consen 426 TRKSGDRAYEQLVRLLIIDEIHLL-HDDRGPVLESIVARTFRRSEST-------------------------------EE 473 (1674)
T ss_pred hcccCchhHHHHHHHHhhhhhhhc-ccccchHHHHHHHHHHHHhhhc-------------------------------cc
Confidence 44422221 334789999999964 5666777777766554321100 02
Q ss_pred ceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCC--cH------HHHHHHHHhcCCCcEEE
Q 011620 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL--KP------LYLVALLQSLGEEKCIV 337 (481)
Q Consensus 266 ~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--k~------~~l~~~l~~~~~~~~lV 337 (481)
+.+.+++|||+++-.+.........+-....+.+ ..+..+.+-++...... +. .....++.....+++||
T Consensus 474 ~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~s--yRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLV 551 (1674)
T KOG0951|consen 474 GSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSS--YRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLV 551 (1674)
T ss_pred CceeeeecccCCchhhhHHHhccCcccccccCcc--cCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence 3478999999976555544333333222222222 12333344444333222 22 12334444556689999
Q ss_pred EcCCchhHHHHHHHHhhcCC----------------------------------cceEEEEccCccChHHHHHHHHHHhc
Q 011620 338 FTSSVESTHRLCTLLNHFGE----------------------------------LRIKIKEYSGLQRQSVRSKTLKAFRE 383 (481)
Q Consensus 338 f~~s~~~~~~l~~~l~~~~~----------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~ 383 (481)
|+.|+++..+.++.++...- ..+.++++|+||+..+|..+.+.|..
T Consensus 552 FVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~ 631 (1674)
T KOG0951|consen 552 FVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFAD 631 (1674)
T ss_pred EEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhc
Confidence 99999988888887763100 12568899999999999999999999
Q ss_pred CCceEEEecccccccCCCCCCCEEEE----ec------CCCChhhHHHHHhhhhcCC--CCCcEEEEEeCCcchhhhhhc
Q 011620 384 GKIQVLVSSDAMTRGMDVEGVNNVVN----YD------KPAYIKTYIHRAGRTARAG--QLGRCFTLLHKDEVCLVGCLT 451 (481)
Q Consensus 384 g~~~vLi~t~~l~~Gidi~~~~~vI~----~~------~p~s~~~~~Q~~GR~~R~~--~~g~~i~~~~~~~~~~~~~i~ 451 (481)
|+++|+++|..+.-|+++|.-+++|- |+ .+.++.+.+||+||+||.+ ..|..+++.+.++....-.+.
T Consensus 632 g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~m 711 (1674)
T KOG0951|consen 632 GHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLM 711 (1674)
T ss_pred CceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhh
Confidence 99999999999999999995444441 33 2457889999999999965 456777777766655544433
No 88
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=3.9e-28 Score=252.90 Aligned_cols=301 Identities=19% Similarity=0.258 Sum_probs=193.5
Q ss_pred hhCCCCCCCCEEEECCCCchHHHHhHHH-HHHHHHhhccCCccEEEEccc----HHHHHHHHHHHHHhccccCceEEEee
Q 011620 62 TIGPGLFERDLCINSPTGSGKTLSYALP-IVQTLSNRAVRCLRALVVLPT----RDLALQVKDVFAAIAPAVGLSVGLAV 136 (481)
Q Consensus 62 ~~~~~~~~~~~iv~~~tGsGKT~~~~~~-i~~~l~~~~~~~~~~lil~P~----~~L~~q~~~~~~~~~~~~~~~v~~~~ 136 (481)
++..+..++.++|+|+||||||.. +| ++..... .....+++.-|. ++++.|+++++..- .|-.++.-.
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~--g~~g~I~~TQPRRlAArsLA~RVA~El~~~---lG~~VGY~v 154 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGR--GVKGLIGHTQPRRLAARTVANRIAEELETE---LGGCVGYKV 154 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCC--CCCCceeeCCCcHHHHHHHHHHHHHHHhhh---hcceeceee
Confidence 343444577889999999999995 44 3322211 111234444575 56666666666531 122222111
Q ss_pred cCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh-hhhHhHH
Q 011620 137 GQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQ 215 (481)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~-~~~~~~~ 215 (481)
. ..+ ....+++|+|+||++|++.+.... .++++++||+||||. .++.++.
T Consensus 155 r---f~~------------------------~~s~~t~I~v~TpG~LL~~l~~d~--~Ls~~~~IIIDEAHERsLn~DfL 205 (1294)
T PRK11131 155 R---FND------------------------QVSDNTMVKLMTDGILLAEIQQDR--LLMQYDTIIIDEAHERSLNIDFI 205 (1294)
T ss_pred c---Ccc------------------------ccCCCCCEEEEChHHHHHHHhcCC--ccccCcEEEecCccccccccchH
Confidence 1 000 112456999999999999987643 388999999999994 5554443
Q ss_pred hHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeee
Q 011620 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (481)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~ 295 (481)
- ..+...+.. .+..+++++|||+.. ..+...+...+.+..
T Consensus 206 L--g~Lk~lL~~------------------------------------rpdlKvILmSATid~--e~fs~~F~~apvI~V 245 (1294)
T PRK11131 206 L--GYLKELLPR------------------------------------RPDLKVIITSATIDP--ERFSRHFNNAPIIEV 245 (1294)
T ss_pred H--HHHHHhhhc------------------------------------CCCceEEEeeCCCCH--HHHHHHcCCCCEEEE
Confidence 1 111111111 023489999999953 344444444444332
Q ss_pred cCCccccCCcccccceecccCC---CcHHHHHHHH------HhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEcc
Q 011620 296 TGETRYKLPERLESYKLICESK---LKPLYLVALL------QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366 (481)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l------~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~ 366 (481)
.+. .+. ++.++...... .+...+..++ .....+.+|||+++..+++.+++.|.+.+.....+..+|
T Consensus 246 ~Gr-~~p----Vei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLh 320 (1294)
T PRK11131 246 SGR-TYP----VEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLY 320 (1294)
T ss_pred cCc-ccc----ceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecc
Confidence 222 111 22222222111 1122222222 223467899999999999999999987653345678899
Q ss_pred CccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecC------------------CCChhhHHHHHhhhhc
Q 011620 367 GLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTAR 428 (481)
Q Consensus 367 ~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~------------------p~s~~~~~Q~~GR~~R 428 (481)
|+++..+|..+++. .|..+|||||+++++|+|+|++++||+++. |.|..+|.||+||+||
T Consensus 321 g~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR 398 (1294)
T PRK11131 321 ARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGR 398 (1294)
T ss_pred cCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCC
Confidence 99999999988875 477899999999999999999999999862 2456789999999999
Q ss_pred CCCCCcEEEEEeCCcchh
Q 011620 429 AGQLGRCFTLLHKDEVCL 446 (481)
Q Consensus 429 ~~~~g~~i~~~~~~~~~~ 446 (481)
. .+|.|+.+++..+...
T Consensus 399 ~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 399 V-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred C-CCcEEEEeCCHHHHHh
Confidence 9 6899999999866543
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=1.3e-27 Score=234.06 Aligned_cols=304 Identities=19% Similarity=0.197 Sum_probs=190.2
Q ss_pred EEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcC
Q 011620 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152 (481)
Q Consensus 73 iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 152 (481)
++.||||+|||.+|+..+...+.. +.+++|++|+.+|+.|+++.++... +.++..++++....+...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~----g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~------ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL----GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQ------ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHH------
Confidence 478999999999998766555533 4479999999999999999998753 567888888776554422
Q ss_pred ccccCccCCchhHHHhhc-cCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHh---HHhHHHHHHHhcccC
Q 011620 153 KLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA---YQAWLPTVLQLTRSD 228 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~---~~~~~~~i~~~~~~~ 228 (481)
.|..+. +..+|+|+|+..+. ..+.++++|||||+|...-.+ .......+......
T Consensus 68 ------------~~~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~- 126 (505)
T TIGR00595 68 ------------AWRKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK- 126 (505)
T ss_pred ------------HHHHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-
Confidence 233333 34799999987663 246788999999999763221 11011111110000
Q ss_pred ccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccc
Q 011620 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308 (481)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (481)
....+++++|||++..........................+. +.
T Consensus 127 -----------------------------------~~~~~vil~SATPsles~~~~~~g~~~~~~l~~r~~~~~~p~-v~ 170 (505)
T TIGR00595 127 -----------------------------------KFNCPVVLGSATPSLESYHNAKQKAYRLLVLTRRVSGRKPPE-VK 170 (505)
T ss_pred -----------------------------------hcCCCEEEEeCCCCHHHHHHHhcCCeEEeechhhhcCCCCCe-EE
Confidence 123478999999764433322211111000000000001110 10
Q ss_pred cceecccC--CCcHHHHHHHHHhc--CCCcEEEEcCCchh----------------------------------------
Q 011620 309 SYKLICES--KLKPLYLVALLQSL--GEEKCIVFTSSVES---------------------------------------- 344 (481)
Q Consensus 309 ~~~~~~~~--~~k~~~l~~~l~~~--~~~~~lVf~~s~~~---------------------------------------- 344 (481)
........ ..-...+...+++. .++++|||+|++..
T Consensus 171 vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~ 250 (505)
T TIGR00595 171 LIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQE 250 (505)
T ss_pred EEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcC
Confidence 11110000 11112333333322 35689999766533
Q ss_pred --------------------HHHHHHHHhhcCCcceEEEEccCccChHHH--HHHHHHHhcCCceEEEecccccccCCCC
Q 011620 345 --------------------THRLCTLLNHFGELRIKIKEYSGLQRQSVR--SKTLKAFREGKIQVLVSSDAMTRGMDVE 402 (481)
Q Consensus 345 --------------------~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r--~~~~~~f~~g~~~vLi~t~~l~~Gidi~ 402 (481)
.+++.+.|++.- .+.++..+|++++...+ +.+++.|++|+.+|||+|++++.|+|+|
T Consensus 251 ~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~ 329 (505)
T TIGR00595 251 PIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFP 329 (505)
T ss_pred CCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCC
Confidence 477777777652 23688899999887655 8899999999999999999999999999
Q ss_pred CCCEEEEecCCC------------ChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhh
Q 011620 403 GVNNVVNYDKPA------------YIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLV 447 (481)
Q Consensus 403 ~~~~vI~~~~p~------------s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~ 447 (481)
++++|++++... ....|.|++||+||.+..|.+++.....+...+
T Consensus 330 ~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~ 386 (505)
T TIGR00595 330 NVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAI 386 (505)
T ss_pred cccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHH
Confidence 999987665432 135789999999999888988866544443333
No 90
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.95 E-value=1.3e-26 Score=203.79 Aligned_cols=196 Identities=31% Similarity=0.514 Sum_probs=162.6
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc-cCCccEEEEcccHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDL 113 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~-~~~~~~lil~P~~~L 113 (481)
+++.+.+.+.++|+..|+++|.++++.+.+ ++++++.+|||+|||+++++++++.+.... ..+++++|++|+++|
T Consensus 6 ~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L 81 (203)
T cd00268 6 LSPELLRGIYALGFEKPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTREL 81 (203)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHH
Confidence 999999999999999999999999999887 899999999999999999999998877652 346789999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc
Q 011620 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
+.|+...+..+....++++..++|+....+.... +.++++|+|+||+.+...+.... .
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~iiv~T~~~l~~~l~~~~-~ 139 (203)
T cd00268 82 ALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRK---------------------LKRGPHIVVATPGRLLDLLERGK-L 139 (203)
T ss_pred HHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---------------------hcCCCCEEEEChHHHHHHHHcCC-C
Confidence 9999999999987778899999988776554322 22467999999999999888643 6
Q ss_pred ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEe
Q 011620 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (481)
.+.+++++|+||+|.+.+..+...+..+...... ..+++++|
T Consensus 140 ~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~--------------------------------------~~~~~~~S 181 (203)
T cd00268 140 DLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK--------------------------------------DRQTLLFS 181 (203)
T ss_pred ChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc--------------------------------------ccEEEEEe
Confidence 7888999999999998877777777777665532 23899999
Q ss_pred EEEecCcccccccccCCceee
Q 011620 274 ATLTQDPNKLAQLDLHHPLFL 294 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~ 294 (481)
||+++.........+.+++.+
T Consensus 182 AT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 182 ATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ccCCHHHHHHHHHHCCCCEEe
Confidence 999977777766666665543
No 91
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=7.5e-27 Score=227.74 Aligned_cols=330 Identities=17% Similarity=0.176 Sum_probs=228.3
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
++| .|=.+|++|+.++.. |.+++|.|+|.+|||.++-.++.-.. ..+.|++|.+|-++|.+|-+++|+.-.
T Consensus 294 ~pF-elD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAialaq----~h~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIALAQ----KHMTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CCC-CccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHHHH----hhccceEecchhhhhccchHHHHHHhc
Confidence 466 788999999988765 99999999999999999777655332 335589999999999999999988765
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEec
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE 205 (481)
.. ++.++|+.... ..+.++|+|.+.|.+.+.++..+ ..++..|||||
T Consensus 365 ~D----vgLlTGDvqin----------------------------PeAsCLIMTTEILRsMLYrgadl-iRDvE~VIFDE 411 (1248)
T KOG0947|consen 365 GD----VGLLTGDVQIN----------------------------PEASCLIMTTEILRSMLYRGADL-IRDVEFVIFDE 411 (1248)
T ss_pred cc----cceeecceeeC----------------------------CCcceEeehHHHHHHHHhcccch-hhccceEEEee
Confidence 43 34788887643 44689999999999999885543 77899999999
Q ss_pred chhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccc
Q 011620 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (481)
Q Consensus 206 ~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~ 285 (481)
+|.+-+...+-.++.++-+++ .++++|++|||.++..++..+
T Consensus 412 VHYiND~eRGvVWEEViIMlP--------------------------------------~HV~~IlLSATVPN~~EFA~W 453 (1248)
T KOG0947|consen 412 VHYINDVERGVVWEEVIIMLP--------------------------------------RHVNFILLSATVPNTLEFADW 453 (1248)
T ss_pred eeecccccccccceeeeeecc--------------------------------------ccceEEEEeccCCChHHHHHH
Confidence 999877777666666665554 455788889988766544332
Q ss_pred ccc--CCceeeecCCccc-c---------------------CCccc----------------------------------
Q 011620 286 LDL--HHPLFLTTGETRY-K---------------------LPERL---------------------------------- 307 (481)
Q Consensus 286 ~~~--~~~~~~~~~~~~~-~---------------------~~~~~---------------------------------- 307 (481)
.+- .....++.....+ . +...+
T Consensus 454 IGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~ 533 (1248)
T KOG0947|consen 454 IGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKT 533 (1248)
T ss_pred hhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcC
Confidence 211 1111111110000 0 00000
Q ss_pred --ccc---eecccC-CC---cHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCC---------------------
Q 011620 308 --ESY---KLICES-KL---KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE--------------------- 357 (481)
Q Consensus 308 --~~~---~~~~~~-~~---k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~--------------------- 357 (481)
... ...... .. ....++..++..+--+++|||-|++.|++.+++|....-
T Consensus 534 ~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk 613 (1248)
T KOG0947|consen 534 NYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLK 613 (1248)
T ss_pred CCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcC
Confidence 000 000000 01 122344555555566999999999999999999876321
Q ss_pred ---------------cceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCC---------
Q 011620 358 ---------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--------- 413 (481)
Q Consensus 358 ---------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p--------- 413 (481)
..-.++.+||++-+--++-+.-.|..|-.+||++|.++.+|+|.| .++||+.+.-
T Consensus 614 ~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMP-ARtvVF~Sl~KhDG~efR~ 692 (1248)
T KOG0947|consen 614 GEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMP-ARTVVFSSLRKHDGNEFRE 692 (1248)
T ss_pred hhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCC-ceeEEeeehhhccCcceee
Confidence 012477899999999999999999999999999999999999999 5556654432
Q ss_pred CChhhHHHHHhhhhcCCCC--CcEEEEEeCCcchhhhhhcccccch
Q 011620 414 AYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVCLVGCLTPLLLCT 457 (481)
Q Consensus 414 ~s~~~~~Q~~GR~~R~~~~--g~~i~~~~~~~~~~~~~i~~~~~~~ 457 (481)
..+.+|.|++|||||.|-+ |++++++... ......+.+.+...
T Consensus 693 L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l~~li~G~ 737 (1248)
T KOG0947|consen 693 LLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATLKRLIMGG 737 (1248)
T ss_pred cCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHHhhHhcCC
Confidence 3578999999999998864 5666555543 45555555554433
No 92
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=8.7e-27 Score=243.77 Aligned_cols=319 Identities=17% Similarity=0.219 Sum_probs=204.4
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
..|...-|....- +.+++.+..++.++|+|+||||||...-. ++... +.....++++.-|.+--+..+++.+....
T Consensus 60 ~~~~~~LPi~~~~-~~Il~~l~~~~vvii~g~TGSGKTTqlPq-~lle~--~~~~~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 60 IRYPDNLPVSAKR-EDIAEAIAENQVVIIAGETGSGKTTQLPK-ICLEL--GRGSHGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred ccCCCCCCHHHHH-HHHHHHHHhCceEEEeCCCCCCcHHHHHH-HHHHc--CCCCCceEecCCccHHHHHHHHHHHHHHh
Confidence 3444434444321 33444444577889999999999995322 22211 11122245666688887777666655432
Q ss_pred cccCceEEEeecCC-chHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEe
Q 011620 126 PAVGLSVGLAVGQS-SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (481)
Q Consensus 126 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViD 204 (481)
|..++..+|.. ..... ...+..|.++|++.|...+.... .+.++++||+|
T Consensus 136 ---g~~lG~~VGY~vR~~~~------------------------~s~~T~I~~~TdGiLLr~l~~d~--~L~~~~~IIID 186 (1283)
T TIGR01967 136 ---GTPLGEKVGYKVRFHDQ------------------------VSSNTLVKLMTDGILLAETQQDR--FLSRYDTIIID 186 (1283)
T ss_pred ---CCCcceEEeeEEcCCcc------------------------cCCCceeeeccccHHHHHhhhCc--ccccCcEEEEc
Confidence 44444444431 11111 12345899999999999887644 37889999999
Q ss_pred cchh-hhhHhHHh-HHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccc
Q 011620 205 ETDR-LLREAYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (481)
Q Consensus 205 E~H~-~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~ 282 (481)
|+|. .++..+.- .+..++... +..+++++|||+.. ..
T Consensus 187 EaHERsL~~D~LL~lLk~il~~r---------------------------------------pdLKlIlmSATld~--~~ 225 (1283)
T TIGR01967 187 EAHERSLNIDFLLGYLKQLLPRR---------------------------------------PDLKIIITSATIDP--ER 225 (1283)
T ss_pred CcchhhccchhHHHHHHHHHhhC---------------------------------------CCCeEEEEeCCcCH--HH
Confidence 9994 55544432 233333221 23389999999953 34
Q ss_pred ccccccCCceeeecCCccccCCcccccceecccC------CCcHHHHHHHHH---hcCCCcEEEEcCCchhHHHHHHHHh
Q 011620 283 LAQLDLHHPLFLTTGETRYKLPERLESYKLICES------KLKPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLN 353 (481)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~---~~~~~~~lVf~~s~~~~~~l~~~l~ 353 (481)
+...+...+++...+. .+.+ ...+..... ......+...+. ....+.+|||+++..+++.+++.|.
T Consensus 226 fa~~F~~apvI~V~Gr-~~PV----ev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~ 300 (1283)
T TIGR01967 226 FSRHFNNAPIIEVSGR-TYPV----EVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILR 300 (1283)
T ss_pred HHHHhcCCCEEEECCC-cccc----eeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHH
Confidence 4444444444333222 1111 111211111 011222222222 2246789999999999999999998
Q ss_pred hcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCC------------------CC
Q 011620 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------------------AY 415 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p------------------~s 415 (481)
+.+..+..+..+||+++..+|..+++.+ +..+|||||+++++|+|+|++++||+++.+ .|
T Consensus 301 ~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~IS 378 (1283)
T TIGR01967 301 KRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPIS 378 (1283)
T ss_pred hcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCC
Confidence 7654456788999999999998886543 246899999999999999999999998843 36
Q ss_pred hhhHHHHHhhhhcCCCCCcEEEEEeCCcchh
Q 011620 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEVCL 446 (481)
Q Consensus 416 ~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~ 446 (481)
..++.||.||+||.+ +|.|+.+++..+...
T Consensus 379 kasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 379 QASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred HHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 679999999999996 999999998766543
No 93
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=8e-26 Score=233.28 Aligned_cols=358 Identities=19% Similarity=0.166 Sum_probs=212.4
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
++++||.+.++.++.....+.+.|+...+|.|||+.++..+. .+.........+|||||. .+..||.+++.++++ .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~-~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~ 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLG-YLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--V 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHH-HHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--C
Confidence 799999999998775555577899999999999998765443 333322222359999998 556789999999986 4
Q ss_pred ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhh
Q 011620 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~ 209 (481)
+++..++|............ ......+|+|+|++++........ --.+++||+||||.+
T Consensus 245 l~v~~~~G~~~eR~~~~~~~------------------~~~~~~dVvITSYe~l~~e~~~L~---k~~W~~VIvDEAHrI 303 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREEL------------------LVAGKFDVCVTSFEMAIKEKTALK---RFSWRYIIIDEAHRI 303 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHH------------------hcccCCCcceecHHHHHHHHHHhc---cCCCCEEEEcCcccc
Confidence 56777777544322211100 012347899999999876543322 225789999999998
Q ss_pred hhHhHHhHHHHHHHhcccCcccccccccccc---------------ccccccchhhh-----------------------
Q 011620 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFL---------------PSAFGSLKTIR----------------------- 251 (481)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~----------------------- 251 (481)
-..... ....+..+... .+....+.++ +..++....+.
T Consensus 304 KN~~Sk--lskalr~L~a~--~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~ 379 (1033)
T PLN03142 304 KNENSL--LSKTMRLFSTN--YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLR 379 (1033)
T ss_pred CCHHHH--HHHHHHHhhcC--cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhh
Confidence 654321 11122221111 1111111111 11111100000
Q ss_pred hccccccCC--CCCCcceeeEEEeEEEecCccccc---------------------------ccccCCceeeecCCcccc
Q 011620 252 RCGVERGFK--DKPYPRLVKMVLSATLTQDPNKLA---------------------------QLDLHHPLFLTTGETRYK 302 (481)
Q Consensus 252 ~~~~~~~~~--~~~~~~~~~i~~Sat~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 302 (481)
...+.+.-. ...+|......+...++..-..+. ...+..|...........
T Consensus 380 pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~ 459 (1033)
T PLN03142 380 PFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPP 459 (1033)
T ss_pred HHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCc
Confidence 000000000 001111111111111110000000 001111111100000000
Q ss_pred CCcccccceecccCCCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHH
Q 011620 303 LPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKA 380 (481)
Q Consensus 303 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 380 (481)
............|...+..++... .+.++|||+.....++.+.++|...+ +.+..++|+++..+|.++++.
T Consensus 460 ----~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g---~~y~rIdGsts~~eRq~~Id~ 532 (1033)
T PLN03142 460 ----YTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRG---YQYCRIDGNTGGEDRDASIDA 532 (1033)
T ss_pred ----ccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHH
Confidence 000001122345666666666543 46799999999999999999998776 788999999999999999999
Q ss_pred HhcC---CceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCc
Q 011620 381 FREG---KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (481)
Q Consensus 381 f~~g---~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 443 (481)
|++. ...+|++|.+.+.|+|+..+++||+||++|++....|++||++|.|+...|.+|-....
T Consensus 533 Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~ 598 (1033)
T PLN03142 533 FNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTE 598 (1033)
T ss_pred hccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeC
Confidence 9863 23568999999999999999999999999999999999999999998887766654333
No 94
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.3e-25 Score=224.84 Aligned_cols=354 Identities=19% Similarity=0.239 Sum_probs=227.0
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
.|++.|. +..+.-.+.-+..++||+|||+++.+|++.....+ ..++|++||+.|+.|.++++..+...+|
T Consensus 82 ~~ydvQl------iGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G----~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 82 RHFDVQL------IGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISG----RGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred CcchHHH------hhhhhhccCccccccCCCCchHHHHHHHHHHHhcC----CCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 5666663 33323356669999999999999999998766543 3599999999999999999999999999
Q ss_pred ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-HHhhhcCCCccc-----CCccEEEE
Q 011620 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFTL-----EHLCYLVV 203 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~~~~~~-----~~~~~iVi 203 (481)
+.+.++.|+......... ..++|+++||..| .+++.....+.+ ..+.++|+
T Consensus 152 Ltv~~i~gg~~~~~r~~~-----------------------y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~Iv 208 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEA-----------------------YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIV 208 (896)
T ss_pred ceEEEEeCCCCHHHHHHH-----------------------hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEe
Confidence 999999998765554221 2469999999999 888776433333 57899999
Q ss_pred ecchhhhhH----------------hHHhHHHHHHHhcccC-------------cccc--ccccc-----ccc-------
Q 011620 204 DETDRLLRE----------------AYQAWLPTVLQLTRSD-------------NENR--FSDAS-----TFL------- 240 (481)
Q Consensus 204 DE~H~~~~~----------------~~~~~~~~i~~~~~~~-------------~~~~--~~~~~-----~~~------- 240 (481)
||+|.++-+ ........+...+... ..+. +.+.+ ..+
T Consensus 209 DEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~ 288 (896)
T PRK13104 209 DEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLD 288 (896)
T ss_pred ccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccC
Confidence 999975331 1122222222222111 0000 00000 000
Q ss_pred --ccccccc------------h---hhhhc----------cc-----cccCCCCCCc-----------------------
Q 011620 241 --PSAFGSL------------K---TIRRC----------GV-----ERGFKDKPYP----------------------- 265 (481)
Q Consensus 241 --~~~~~~~------------~---~~~~~----------~~-----~~~~~~~~~~----------------------- 265 (481)
...+... . ..... .+ .+-+....|.
T Consensus 289 ~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~A 368 (896)
T PRK13104 289 PGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLA 368 (896)
T ss_pred CcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeee
Confidence 0000000 0 00000 00 0000000000
Q ss_pred ----------ceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHH--hcCCC
Q 011620 266 ----------RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--SLGEE 333 (481)
Q Consensus 266 ----------~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~ 333 (481)
..++-+||+|.......+...+ .-.++..+. ..+........ .+..+...|...+...+. ...+.
T Consensus 369 sIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY-~l~Vv~IPt-nkp~~R~d~~d-~v~~t~~~k~~av~~~i~~~~~~g~ 445 (896)
T PRK13104 369 SITFQNFFRMYNKLSGMTGTADTEAYEFQQIY-NLEVVVIPT-NRSMIRKDEAD-LVYLTQADKFQAIIEDVRECGVRKQ 445 (896)
T ss_pred eehHHHHHHhcchhccCCCCChhHHHHHHHHh-CCCEEECCC-CCCcceecCCC-eEEcCHHHHHHHHHHHHHHHHhCCC
Confidence 0013455666543333332222 122222222 22222221111 223334455555555553 23577
Q ss_pred cEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCC-C---------
Q 011620 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE-G--------- 403 (481)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~-~--------- 403 (481)
|+||||+|++.++.++++|.+.+ ++...+|+.....++..+.+.|+.| .|+|||+++++|+||. +
T Consensus 446 PVLVgt~Sie~sE~ls~~L~~~g---i~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~ 520 (896)
T PRK13104 446 PVLVGTVSIEASEFLSQLLKKEN---IKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLAN 520 (896)
T ss_pred CEEEEeCcHHHHHHHHHHHHHcC---CCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhc
Confidence 99999999999999999999887 8999999999999999999999999 4999999999999985 1
Q ss_pred ----------------------------CCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 404 ----------------------------VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 404 ----------------------------~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
==+||....+.|..-=.|..||+||.|.+|.+-.|++-.|.
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 521 LPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred cccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 11688888889998899999999999999999999997664
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.6e-25 Score=223.92 Aligned_cols=356 Identities=19% Similarity=0.192 Sum_probs=227.8
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHH-HHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~-~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.|. .|++.|.-..-. -.+.-+..+.||+|||+++.+|+. ..+ . |..+-|++||..||.|.++++..+
T Consensus 78 lg~-~~~dvQlig~l~------L~~G~Iaem~TGeGKTLva~lpa~l~aL-~----G~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 78 LGM-RHFDVQLIGGMV------LHEGKIAEMKTGEGKTLVATLPAYLNAL-T----GKGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred hCC-CCCccHHHhhHH------hcCCchhhhhcCCCcHHHHHHHHHHHHH-c----CCCEEEEecCHHHHHHHHHHHHHH
Confidence 454 778888544321 134459999999999999999985 444 2 224889999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-HHhhhcCCC-----cccCCc
Q 011620 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHL 198 (481)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~~~-----~~~~~~ 198 (481)
...+|++++++.|+......... ..++|+++|+..| .+++..... .....+
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~-----------------------y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~ 202 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREA-----------------------YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGL 202 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHh-----------------------cCCCeEEECCcchhhhhhhcccccchhhhccccc
Confidence 99999999999998766554222 2369999999999 777764321 236678
Q ss_pred cEEEEecchhhhhH----------------hHHhHHHHHHHhcccCc-------c--------------------ccccc
Q 011620 199 CYLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDN-------E--------------------NRFSD 235 (481)
Q Consensus 199 ~~iViDE~H~~~~~----------------~~~~~~~~i~~~~~~~~-------~--------------------~~~~~ 235 (481)
.++|+||+|.++-+ .....+..+...+.... . +..+.
T Consensus 203 ~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~ 282 (830)
T PRK12904 203 NYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDP 282 (830)
T ss_pred ceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccCh
Confidence 99999999975321 11222222222221100 0 00000
Q ss_pred ccccccccccc-ch---hhhhc----------cc-----cccCCCCCC--------------------------------
Q 011620 236 ASTFLPSAFGS-LK---TIRRC----------GV-----ERGFKDKPY-------------------------------- 264 (481)
Q Consensus 236 ~~~~~~~~~~~-~~---~~~~~----------~~-----~~~~~~~~~-------------------------------- 264 (481)
....+..+... +. ..... .+ .+.+....|
T Consensus 283 ~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~F 362 (830)
T PRK12904 283 ENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYF 362 (830)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHH
Confidence 00000000000 00 00000 00 000000000
Q ss_pred -cceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHh--cCCCcEEEEcCC
Q 011620 265 -PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSS 341 (481)
Q Consensus 265 -~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s 341 (481)
...++.+||+|.......+...+ .-.++..+. ..+....... -.+..+...|...+...+.. ..+.++||||+|
T Consensus 363 r~Y~kl~GmTGTa~te~~E~~~iY-~l~vv~IPt-nkp~~r~d~~-d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~S 439 (830)
T PRK12904 363 RMYEKLAGMTGTADTEAEEFREIY-NLDVVVIPT-NRPMIRIDHP-DLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVS 439 (830)
T ss_pred HhcchhcccCCCcHHHHHHHHHHh-CCCEEEcCC-CCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 00124566777644333332222 112222222 2222211111 12233445577777777754 567799999999
Q ss_pred chhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCC-----------------
Q 011620 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV----------------- 404 (481)
Q Consensus 342 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~----------------- 404 (481)
+..++.+.+.|.+.+ +++..+|+. ..+|+..+..|..+...|+|||+++++|+||+--
T Consensus 440 i~~se~Ls~~L~~~g---i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~ 514 (830)
T PRK12904 440 IEKSELLSKLLKKAG---IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEE 514 (830)
T ss_pred HHHHHHHHHHHHHCC---CceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhH
Confidence 999999999999887 888999995 6789999999999999999999999999998621
Q ss_pred ---------------------CEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 405 ---------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 405 ---------------------~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
=+||....+.|..--.|..||+||.|.+|.+-.|++-.|.
T Consensus 515 ~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 515 QIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred HHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 1788888899999999999999999999999999997764
No 96
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.94 E-value=1.3e-25 Score=218.35 Aligned_cols=356 Identities=17% Similarity=0.155 Sum_probs=207.6
Q ss_pred CCCchhhHHHHHhhhCCCCCCC-CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011620 49 SSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~-~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (481)
..+|.||..|+..+.+++..|+ .+++.|+||||||.+++. ++..|.+.... .|+|||+-++.|+.|.+..+..+.+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~~~~-KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKSGWV-KRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhcchh-heeeEEechHHHHHHHHHHHHHhCCC
Confidence 4799999999999999988884 599999999999999765 66666665332 37999999999999999999998875
Q ss_pred cCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcC----CCcccCCccEEEE
Q 011620 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVV 203 (481)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~----~~~~~~~~~~iVi 203 (481)
+-.+..+.+... ...++|+|+|++++..-.... ..+....|++||+
T Consensus 242 -~~~~n~i~~~~~-----------------------------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvI 291 (875)
T COG4096 242 -GTKMNKIEDKKG-----------------------------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVI 291 (875)
T ss_pred -ccceeeeecccC-----------------------------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEe
Confidence 333333332211 112489999999998877653 2244667999999
Q ss_pred ecchhhhhHhHHhHHHHHHH----hcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecC
Q 011620 204 DETDRLLREAYQAWLPTVLQ----LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (481)
Q Consensus 204 DE~H~~~~~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~ 279 (481)
||||+-+-..+...+..+-. +++.+.... ...-..++. ..+...+.+..+..+......+.+..--.....
T Consensus 292 DEaHRgi~~~~~~I~dYFdA~~~gLTATP~~~~----d~~T~~~F~-g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~ 366 (875)
T COG4096 292 DEAHRGIYSEWSSILDYFDAATQGLTATPKETI----DRSTYGFFN-GEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLD 366 (875)
T ss_pred chhhhhHHhhhHHHHHHHHHHHHhhccCccccc----ccccccccC-CCcceeecHHHHhhccccCCCCceEEeeecccc
Confidence 99998766655544333322 222221111 011111111 122222333344444333323333221111111
Q ss_pred ccccccc----ccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHh--cC--CCcEEEEcCCchhHHHHHHH
Q 011620 280 PNKLAQL----DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LG--EEKCIVFTSSVESTHRLCTL 351 (481)
Q Consensus 280 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~--~~~~lVf~~s~~~~~~l~~~ 351 (481)
....... -..... +......+.....-...........-...+.+.+.. .. .+|+||||.+..+|+++...
T Consensus 367 G~~~~~~serek~~g~~-i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~ 445 (875)
T COG4096 367 GWKPDAGSEREKLQGEA-IDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREA 445 (875)
T ss_pred CcCcCccchhhhhhccc-cCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHH
Confidence 0000000 000000 000000000000000000000011112223344444 22 46999999999999999999
Q ss_pred HhhcCCc-c-eEEEEccCccChHHHHHHHHHHhc-C-CceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhh
Q 011620 352 LNHFGEL-R-IKIKEYSGLQRQSVRSKTLKAFRE-G-KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (481)
Q Consensus 352 l~~~~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~-g-~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~ 427 (481)
|.+..+. + --+..+.++.. .-+..++.|.. . -.+|.|+++++.+|||+|.|-++|++..-.|...|.|++||+.
T Consensus 446 ~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGT 523 (875)
T COG4096 446 LVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGT 523 (875)
T ss_pred HHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcc
Confidence 9765432 1 22344454433 34456666765 3 3567888899999999999999999999999999999999999
Q ss_pred cC-C------CCCcEEEEEeCCcc
Q 011620 428 RA-G------QLGRCFTLLHKDEV 444 (481)
Q Consensus 428 R~-~------~~g~~i~~~~~~~~ 444 (481)
|. + ++...+.+++..+.
T Consensus 524 Rl~~~~~~~~~dK~~F~ifDf~~~ 547 (875)
T COG4096 524 RLCPDLGGPEQDKEFFTIFDFVDN 547 (875)
T ss_pred ccCccccCccccceeEEEEEhhhh
Confidence 92 2 23456666665443
No 97
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.94 E-value=1.2e-24 Score=227.98 Aligned_cols=402 Identities=18% Similarity=0.179 Sum_probs=226.9
Q ss_pred CCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccH
Q 011620 32 LPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (481)
Q Consensus 32 ~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~ 111 (481)
++.+++.+.+.+...|| ++|+.|.+.+..+.+.+..+++++++||||+|||++|++|++.... .+.+++|.|||+
T Consensus 228 ~~~~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~----~~~~vvi~t~t~ 302 (850)
T TIGR01407 228 YNTLSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI----TEKPVVISTNTK 302 (850)
T ss_pred cccccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc----CCCeEEEEeCcH
Confidence 44567788888888898 6999999998888888888899999999999999999999987665 233799999999
Q ss_pred HHHHHHHH-HHHHhccccC--ceEEEeecCCchHHH--HHHhhhc-----------------------Ccc---------
Q 011620 112 DLALQVKD-VFAAIAPAVG--LSVGLAVGQSSIADE--ISELIKR-----------------------PKL--------- 154 (481)
Q Consensus 112 ~L~~q~~~-~~~~~~~~~~--~~v~~~~~~~~~~~~--~~~~~~~-----------------------~~~--------- 154 (481)
.|++|+.. ++..+....+ +++..+.|...+... ....+.. +..
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999864 6666655444 778888877654110 0000000 000
Q ss_pred -----------ccCcc-----CCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhH----
Q 011620 155 -----------EAGIC-----YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY---- 214 (481)
Q Consensus 155 -----------~~~~~-----~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~---- 214 (481)
+.+.. .++....+.....++|+||++..|...+.....+ +...+++||||||++.+...
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~i-lp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPEL-FPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccccc-CCCCCEEEEECcchHHHHHHHHhc
Confidence 00000 1122233444567999999999998877543322 34567999999998765321
Q ss_pred --------HhHHHHHH------------Hhccc---Ccccccc-----------------------cc-ccccccccccc
Q 011620 215 --------QAWLPTVL------------QLTRS---DNENRFS-----------------------DA-STFLPSAFGSL 247 (481)
Q Consensus 215 --------~~~~~~i~------------~~~~~---~~~~~~~-----------------------~~-~~~~~~~~~~~ 247 (481)
...+..+. ..... .....+. .. ...........
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 11111110 00000 0000000 00 00000000000
Q ss_pred hh----------h----hhcccccc-------------CC-------CCCC-cceeeEEEeEEEecC--ccccc-ccccC
Q 011620 248 KT----------I----RRCGVERG-------------FK-------DKPY-PRLVKMVLSATLTQD--PNKLA-QLDLH 289 (481)
Q Consensus 248 ~~----------~----~~~~~~~~-------------~~-------~~~~-~~~~~i~~Sat~~~~--~~~~~-~~~~~ 289 (481)
.. . ...|+... .. ...+ ....+|++|||+... ...+. ..++.
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 00010000 00 0011 123578999999743 22222 22332
Q ss_pred CceeeecCCccccCCccccccee-ccc---CCCcHH---HHHHHH---HhcCCCcEEEEcCCchhHHHHHHHHhhcCC-c
Q 011620 290 HPLFLTTGETRYKLPERLESYKL-ICE---SKLKPL---YLVALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFGE-L 358 (481)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~k~~---~l~~~l---~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~-~ 358 (481)
+........+.+...+....+.. ..+ ...... .+...+ ....++++|||++|....+.++..|..... .
T Consensus 622 ~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~ 701 (850)
T TIGR01407 622 DVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFE 701 (850)
T ss_pred ccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcccc
Confidence 22111111111111111111110 001 001111 122222 123567999999999999999999975221 1
Q ss_pred ceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCC--CCEEEEecCCCC---------------------
Q 011620 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG--VNNVVNYDKPAY--------------------- 415 (481)
Q Consensus 359 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~--~~~vI~~~~p~s--------------------- 415 (481)
+..+. .. +.. ..|..++++|++++..||++|+.+++|||+|+ +.+||+..+|..
T Consensus 702 ~~~~l-~q-~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~ 778 (850)
T TIGR01407 702 GYEVL-AQ-GIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNP 778 (850)
T ss_pred CceEE-ec-CCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 12322 22 222 46889999999999999999999999999997 557888887632
Q ss_pred ---------hhhHHHHHhhhhcCCCCCcEEEEEeCC
Q 011620 416 ---------IKTYIHRAGRTARAGQLGRCFTLLHKD 442 (481)
Q Consensus 416 ---------~~~~~Q~~GR~~R~~~~g~~i~~~~~~ 442 (481)
...+.|.+||..|...+..+++++|..
T Consensus 779 f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 779 FYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred hHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 234579999999987766666666654
No 98
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=3e-25 Score=224.74 Aligned_cols=318 Identities=20% Similarity=0.202 Sum_probs=224.8
Q ss_pred HHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 011620 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 44 ~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
..++| +|-++|++|+..+-. +.+++|+||||+|||+++-.++...+..+ -+++|++|.++|.+|.++++..
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler----~esVlV~ApTssGKTvVaeyAi~~al~~~----qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILER----GESVLVCAPTSSGKTVVAEYAIALALRDG----QRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhC----CCcEEEEccCCCCcchHHHHHHHHHHHcC----CceEeccchhhhhhhHHHHHHH
Confidence 44677 899999999887665 89999999999999999888777666543 3699999999999999988765
Q ss_pred hccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEE
Q 011620 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iVi 203 (481)
-.....--+++.+|+.. ++..+.++|+|.+.|.+.+..+ ...+.++..||+
T Consensus 185 ~fgdv~~~vGL~TGDv~----------------------------IN~~A~clvMTTEILRnMlyrg-~~~~~~i~~ViF 235 (1041)
T COG4581 185 KFGDVADMVGLMTGDVS----------------------------INPDAPCLVMTTEILRNMLYRG-SESLRDIEWVVF 235 (1041)
T ss_pred Hhhhhhhhccceeccee----------------------------eCCCCceEEeeHHHHHHHhccC-cccccccceEEE
Confidence 43321223566777654 4566789999999999999884 456888999999
Q ss_pred ecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccc
Q 011620 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 283 (481)
Q Consensus 204 DE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~ 283 (481)
||+|.+.+...+-..+.++-+++ ..++++++|||.++...+.
T Consensus 236 DEvHyi~D~eRG~VWEE~Ii~lP--------------------------------------~~v~~v~LSATv~N~~EF~ 277 (1041)
T COG4581 236 DEVHYIGDRERGVVWEEVIILLP--------------------------------------DHVRFVFLSATVPNAEEFA 277 (1041)
T ss_pred EeeeeccccccchhHHHHHHhcC--------------------------------------CCCcEEEEeCCCCCHHHHH
Confidence 99999998888888888877775 3448999999997665543
Q ss_pred cccc--cCCceeeecCCccccCCccccccee----------------------------------cc-------------
Q 011620 284 AQLD--LHHPLFLTTGETRYKLPERLESYKL----------------------------------IC------------- 314 (481)
Q Consensus 284 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~------------- 314 (481)
.+.. -..+..+......+. ...++.. ..
T Consensus 278 ~Wi~~~~~~~~~vv~t~~Rpv---PL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~ 354 (1041)
T COG4581 278 EWIQRVHSQPIHVVSTEHRPV---PLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRT 354 (1041)
T ss_pred HHHHhccCCCeEEEeecCCCC---CeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccc
Confidence 3322 222322222211100 0000000 00
Q ss_pred -------cCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcC-----------------------C--cc---
Q 011620 315 -------ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-----------------------E--LR--- 359 (481)
Q Consensus 315 -------~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~-----------------------~--~~--- 359 (481)
....+...+...+...+.-++++|+-|++.|+..+..+.... . .+
T Consensus 355 ~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~ 434 (1041)
T COG4581 355 KALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPL 434 (1041)
T ss_pred cccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcc
Confidence 000111223444444456689999999999988887665310 0 00
Q ss_pred ----------eEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecC---------CCChhhHH
Q 011620 360 ----------IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK---------PAYIKTYI 420 (481)
Q Consensus 360 ----------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~---------p~s~~~~~ 420 (481)
-.+..+|+++=+..+..+...|..|-.+|+++|.+++.|+|.|. ..|++... .-++.+|.
T Consensus 435 ~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa-rtvv~~~l~K~dG~~~r~L~~gEy~ 513 (1041)
T COG4581 435 QILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA-RTVVFTSLSKFDGNGHRWLSPGEYT 513 (1041)
T ss_pred cHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc-cceeeeeeEEecCCceeecChhHHH
Confidence 12557899999999999999999999999999999999999994 44554432 35688999
Q ss_pred HHHhhhhcCCCC--CcEEEEEeC
Q 011620 421 HRAGRTARAGQL--GRCFTLLHK 441 (481)
Q Consensus 421 Q~~GR~~R~~~~--g~~i~~~~~ 441 (481)
|+.||+||.|.+ |.++++..+
T Consensus 514 QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 514 QMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred HhhhhhccccccccceEEEecCC
Confidence 999999998865 555555343
No 99
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=5.2e-25 Score=219.45 Aligned_cols=357 Identities=19% Similarity=0.204 Sum_probs=217.7
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.|. .|++.|.-.--.+ .+.-+.++.||+|||+++.+++.-.... |..+-+++||..||.|-++++.++.
T Consensus 77 ~g~-~~~dvQlig~l~l------~~G~iaEm~TGEGKTLvA~l~a~l~al~----G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVL------HEGNIAEMKTGEGKTLTATLPVYLNALT----GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred hCC-CCchhHHHHHHHH------hcCCcccccCCCCCcHHHHHHHHHHHHc----CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 454 7888886553322 3344999999999999999988766654 3469999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHH-hhhcC-----CCcccCCcc
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD-HINAT-----RGFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~-~l~~~-----~~~~~~~~~ 199 (481)
..+|++|+++.++......... ..++|+.+|...|-- .+... .......+.
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~-----------------------y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~ 202 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAA-----------------------YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLN 202 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHH-----------------------hcCCCeecCCccccccchhhccccchhhhhccCcc
Confidence 9999999999887655443221 346999999866532 22111 111245678
Q ss_pred EEEEecchhhhhH----------------hHHhHHHHHHHhcccCcc---------cccc-----------cc-----cc
Q 011620 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNE---------NRFS-----------DA-----ST 238 (481)
Q Consensus 200 ~iViDE~H~~~~~----------------~~~~~~~~i~~~~~~~~~---------~~~~-----------~~-----~~ 238 (481)
+.||||+|.++-+ .....+..+...+..... ..+. .. ..
T Consensus 203 ~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~ 282 (796)
T PRK12906 203 YAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEK 282 (796)
T ss_pred eeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHH
Confidence 9999999964221 111222222222211100 0000 00 00
Q ss_pred --ccccccccch----hhhhcc---------------------c-----cccCCCCCC----------------------
Q 011620 239 --FLPSAFGSLK----TIRRCG---------------------V-----ERGFKDKPY---------------------- 264 (481)
Q Consensus 239 --~~~~~~~~~~----~~~~~~---------------------~-----~~~~~~~~~---------------------- 264 (481)
.+...+.... ..-..+ + .+-+....|
T Consensus 283 ~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t 362 (796)
T PRK12906 283 LFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQT 362 (796)
T ss_pred HcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCcee
Confidence 0000000000 000000 0 000000000
Q ss_pred -----------cceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhc--C
Q 011620 265 -----------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--G 331 (481)
Q Consensus 265 -----------~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~ 331 (481)
...++.+||+|.......+...+ .-.++..+. ..+....... -.+..+...|...+...+... .
T Consensus 363 ~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY-~l~vv~IPt-nkp~~r~d~~-d~i~~t~~~K~~al~~~i~~~~~~ 439 (796)
T PRK12906 363 LATITYQNFFRMYKKLSGMTGTAKTEEEEFREIY-NMEVITIPT-NRPVIRKDSP-DLLYPTLDSKFNAVVKEIKERHAK 439 (796)
T ss_pred eeeehHHHHHHhcchhhccCCCCHHHHHHHHHHh-CCCEEEcCC-CCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhC
Confidence 00012234444332222121111 111111111 1111111111 112223345666677666433 6
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCC---CCC---
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---GVN--- 405 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~---~~~--- 405 (481)
+.++||||+|+..++.++..|.+.+ +++..+|++....++..+.+.++.|. |+|||+++++|.||+ ++.
T Consensus 440 g~pvLI~t~si~~se~ls~~L~~~g---i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 440 GQPVLVGTVAIESSERLSHLLDEAG---IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCC---CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhC
Confidence 7899999999999999999999887 88899999988877777777776664 999999999999995 788
Q ss_pred --EEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 406 --NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 406 --~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
+||+++.|.|...+.|+.||+||.|.+|.+..|++..|.
T Consensus 515 GLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 515 GLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred CcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 999999999999999999999999999999999998764
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=1.9e-25 Score=219.32 Aligned_cols=353 Identities=21% Similarity=0.233 Sum_probs=243.8
Q ss_pred CCHHHH-HHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 35 LDPRLK-VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 35 l~~~~~-~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
+++-.. ...+..|...++.||.+++. ..++.++++.+..+||+.|||+++-+.++..+.-.. ..++++.|-...
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r---r~~llilp~vsi 281 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR---RNVLLILPYVSI 281 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh---hceeEecceeeh
Confidence 334333 33445788899999999875 556667899999999999999999988887766542 259999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCC-
Q 011620 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG- 192 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~- 192 (481)
+..-...+..+....|+++..+.|..+.... .+.-++.|||.++-..++.+.-.
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~-------------------------~k~~sv~i~tiEkanslin~lie~ 336 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFPPEKR-------------------------RKRESVAIATIEKANSLINSLIEQ 336 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCCCCCc-------------------------ccceeeeeeehHhhHhHHHHHHhc
Confidence 9888888999998899999998876553322 12348999999977655443110
Q ss_pred cccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEE
Q 011620 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (481)
Q Consensus 193 ~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (481)
-.+..+++|||||.|.+.+.+.+..++.++..+...+.. ..+++|+|
T Consensus 337 g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~---------------------------------~~~~iIGM 383 (1008)
T KOG0950|consen 337 GRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLE---------------------------------TSVQIIGM 383 (1008)
T ss_pred CCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccc---------------------------------cceeEeee
Confidence 125568999999999999999999999998876543322 11489999
Q ss_pred eEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHH-------------------HHHHHHHh--cC
Q 011620 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL-------------------YLVALLQS--LG 331 (481)
Q Consensus 273 Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-------------------~l~~~l~~--~~ 331 (481)
|||+++...-.. ++. ...+....+...+.+.+..-......+ +.. .+..+... ..
T Consensus 384 SATi~N~~lL~~--~L~-A~~y~t~fRPv~L~E~ik~G~~i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e 459 (1008)
T KOG0950|consen 384 SATIPNNSLLQD--WLD-AFVYTTRFRPVPLKEYIKPGSLIYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPE 459 (1008)
T ss_pred ecccCChHHHHH--Hhh-hhheecccCcccchhccCCCcccccch-hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhc
Confidence 999864422111 111 111111111111111111111111110 111 11111111 12
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCC-----------------------------------cceEEEEccCccChHHHHH
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGE-----------------------------------LRIKIKEYSGLQRQSVRSK 376 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~-----------------------------------~~~~~~~~~~~~~~~~r~~ 376 (481)
+.++||||+++..++.++..+...-+ ....+.++|++++..+|+.
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~ 539 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREI 539 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHH
Confidence 44699999999999998876544110 1246889999999999999
Q ss_pred HHHHHhcCCceEEEecccccccCCCCCCCEEEEec----CCCChhhHHHHHhhhhcCCC--CCcEEEEEeCCcchhhhhh
Q 011620 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD----KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVCLVGCL 450 (481)
Q Consensus 377 ~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~----~p~s~~~~~Q~~GR~~R~~~--~g~~i~~~~~~~~~~~~~i 450 (481)
+...|++|...|++||+.+.-|+++|.-.++|-.- ...+..+|.||+||+||.|. .|.+++++...+.+.+..+
T Consensus 540 iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 540 IEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred HHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 99999999999999999999999999766655332 23456789999999999875 5889999999998777766
Q ss_pred cccc
Q 011620 451 TPLL 454 (481)
Q Consensus 451 ~~~~ 454 (481)
...-
T Consensus 620 v~~~ 623 (1008)
T KOG0950|consen 620 VNSP 623 (1008)
T ss_pred Hhcc
Confidence 5443
No 101
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.4e-24 Score=198.80 Aligned_cols=172 Identities=19% Similarity=0.190 Sum_probs=132.2
Q ss_pred eeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhc--CCCcEEEEcCCchh
Q 011620 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVES 344 (481)
Q Consensus 267 ~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~ 344 (481)
.|++++||||.+.........+-..++...+.-++ .....+...+.+.|...++.. .+.++||.+-+.++
T Consensus 387 ~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP--------~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDP--------EIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred CCEEEEECCCChHHHHhccCceeEEeecCCCCCCC--------ceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 48999999997543333332222222222222211 112334455677777666543 56899999999999
Q ss_pred HHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEec-----CCCChhhH
Q 011620 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD-----KPAYIKTY 419 (481)
Q Consensus 345 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~-----~p~s~~~~ 419 (481)
|+.+.++|.+.| +++..+|++...-+|.+++..++.|+++|||+.+.+.+|+|+|.++.|.++| +..|...+
T Consensus 459 AEdLT~Yl~e~g---ikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SL 535 (663)
T COG0556 459 AEDLTEYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSL 535 (663)
T ss_pred HHHHHHHHHhcC---ceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchH
Confidence 999999999988 9999999999999999999999999999999999999999999999999987 45788899
Q ss_pred HHHHhhhhcCCCCCcEEEEEeCCcchhhhhh
Q 011620 420 IHRAGRTARAGQLGRCFTLLHKDEVCLVGCL 450 (481)
Q Consensus 420 ~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i 450 (481)
+|.+|||.|+ -.|.++.+.+.-...+-+.|
T Consensus 536 IQtIGRAARN-~~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 536 IQTIGRAARN-VNGKVILYADKITDSMQKAI 565 (663)
T ss_pred HHHHHHHhhc-cCCeEEEEchhhhHHHHHHH
Confidence 9999999996 57999999986544444433
No 102
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=9e-24 Score=211.27 Aligned_cols=146 Identities=18% Similarity=0.249 Sum_probs=120.4
Q ss_pred CCCHHHHHHHH-----HcCCCCC---chhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEE
Q 011620 34 CLDPRLKVALQ-----NMGISSL---FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105 (481)
Q Consensus 34 ~l~~~~~~~l~-----~~~~~~~---~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~l 105 (481)
++..++.+.+. ..||..| +|+|..++..++. +++++..++||+|||++|++|++..+..+ ..++
T Consensus 68 al~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l----~~gvIAeaqTGeGKTLAf~LP~l~~aL~g----~~v~ 139 (970)
T PRK12899 68 GVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAM----HKGFITEMQTGEGKTLTAVMPLYLNALTG----KPVH 139 (970)
T ss_pred CCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhc----CCCeEEEeCCCCChHHHHHHHHHHHHhhc----CCeE
Confidence 47777777776 4688888 9999999888776 88999999999999999999999877643 2489
Q ss_pred EEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-H
Q 011620 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-M 184 (481)
Q Consensus 106 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-~ 184 (481)
|++||+.|+.|.++++..+....|+++..+.|+.....+... .+++|+|+||.+| .
T Consensus 140 IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~-----------------------y~~DIVygTPgRLgf 196 (970)
T PRK12899 140 LVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI-----------------------YQCDVVYGTASEFGF 196 (970)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH-----------------------cCCCEEEECCChhHH
Confidence 999999999999999999999899999999999887766322 1369999999999 8
Q ss_pred HhhhcCCCccc-------CCccEEEEecchhhhh
Q 011620 185 DHINATRGFTL-------EHLCYLVVDETDRLLR 211 (481)
Q Consensus 185 ~~l~~~~~~~~-------~~~~~iViDE~H~~~~ 211 (481)
+++... .+.+ ..+.++|+||||.++-
T Consensus 197 DyLrd~-~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 197 DYLRDN-SIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HHhhCC-CCCcCHHHhhcccccEEEEechhhhhh
Confidence 888763 2333 3568999999997644
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=3.7e-24 Score=213.75 Aligned_cols=357 Identities=17% Similarity=0.212 Sum_probs=226.1
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.|. .|++.|. +..+.-.+.-+.+++||+|||+++.+|+......+ ..|.|++|+..|+.|.++++..+.
T Consensus 79 lgm-~~ydVQl------iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g----~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 79 FEM-RHFDVQL------LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTG----KGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred hCC-CcCchHH------hcchHhcCCccccccCCCCchHHHHHHHHHHHhcC----CCEEEEeCCHHHHHHHHHHHHHHH
Confidence 343 5677774 33333356779999999999999999997665543 349999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-HHhhhcCCCcc-----cCCcc
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFT-----LEHLC 199 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~~~~~-----~~~~~ 199 (481)
..+|++|.+..++....+.. -...++|+++||..| .+++...-.+. ...+.
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~-----------------------~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~ 204 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKK-----------------------AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLH 204 (908)
T ss_pred HhcCCeEEEecCCCCHHHHH-----------------------hcCCCCeEEeCCCcccchhhhccCccchhhhhccccc
Confidence 99999999998877653321 123579999999999 77766532222 36788
Q ss_pred EEEEecchhhhhH----------------hHHhHHHHHHHhcccC------------------cccc--cccc-----cc
Q 011620 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSD------------------NENR--FSDA-----ST 238 (481)
Q Consensus 200 ~iViDE~H~~~~~----------------~~~~~~~~i~~~~~~~------------------~~~~--~~~~-----~~ 238 (481)
++||||+|.++-+ .....+..+...+... ..+. +.+. ..
T Consensus 205 ~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~ 284 (908)
T PRK13107 205 YALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVEN 284 (908)
T ss_pred eeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHH
Confidence 9999999975432 1111111111111100 0000 0000 00
Q ss_pred cc---------ccccccch---------------hhhhc----------cc-----cccCCCCCCc--------------
Q 011620 239 FL---------PSAFGSLK---------------TIRRC----------GV-----ERGFKDKPYP-------------- 265 (481)
Q Consensus 239 ~~---------~~~~~~~~---------------~~~~~----------~~-----~~~~~~~~~~-------------- 265 (481)
.+ ...+.... .+... .+ .+-+....|.
T Consensus 285 ~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~ 364 (908)
T PRK13107 285 LLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVH 364 (908)
T ss_pred HHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCC
Confidence 00 00000000 00000 00 0000000000
Q ss_pred -------------------ceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHH
Q 011620 266 -------------------RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326 (481)
Q Consensus 266 -------------------~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 326 (481)
..++.+||+|.......+... ++..++......+......... +......|...+.+.
T Consensus 365 I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~i--Y~l~Vv~IPTnkp~~R~d~~d~-iy~t~~~K~~Aii~e 441 (908)
T PRK13107 365 IQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHI--YGLDTVVVPTNRPMVRKDMADL-VYLTADEKYQAIIKD 441 (908)
T ss_pred CCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHH--hCCCEEECCCCCCccceeCCCc-EEeCHHHHHHHHHHH
Confidence 002345666655433333222 2222222222222222222222 223334555555544
Q ss_pred HHh--cCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCC-C
Q 011620 327 LQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE-G 403 (481)
Q Consensus 327 l~~--~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~-~ 403 (481)
+.. ..+.++||||.|+..++.++.+|.+.+ +.+..+|+..+..++..+.+.|+.|. |+|||+++++|+||. +
T Consensus 442 i~~~~~~GrpVLV~t~sv~~se~ls~~L~~~g---i~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLg 516 (908)
T PRK13107 442 IKDCRERGQPVLVGTVSIEQSELLARLMVKEK---IPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLG 516 (908)
T ss_pred HHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCC---CCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecC
Confidence 442 256799999999999999999999887 88899999999999999999999997 999999999999985 1
Q ss_pred ------------------------------------CCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 404 ------------------------------------VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 404 ------------------------------------~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
==+||....+.|..-=.|..||+||.|.+|.+..|++-.|.
T Consensus 517 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 517 GNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred CchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12788888899999999999999999999999999997775
No 104
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=2.8e-25 Score=211.72 Aligned_cols=309 Identities=18% Similarity=0.214 Sum_probs=213.0
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
++-|+|..|+..+-+ +++++|.|.|.+|||.++-.+|...+.... ||+|..|-++|.+|-++++..-...
T Consensus 129 ~LDpFQ~~aI~Cidr----~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ----RVIYTSPIKALSNQKYREl~~EF~D-- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDR----GESVLVSAHTSAGKTVVAEYAIAMSLREKQ----RVIYTSPIKALSNQKYRELLEEFKD-- 198 (1041)
T ss_pred ccCchHhhhhhhhcC----CceEEEEeecCCCcchHHHHHHHHHHHhcC----eEEeeChhhhhcchhHHHHHHHhcc--
Confidence 788899998876544 889999999999999999998888776643 7999999999999999888765443
Q ss_pred ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhh
Q 011620 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~ 209 (481)
|++-+|+.. ++..+.-+|+|.+.|...+.++. -.+..+..|||||+|.|
T Consensus 199 --VGLMTGDVT----------------------------InP~ASCLVMTTEILRsMLYRGS-EvmrEVaWVIFDEIHYM 247 (1041)
T KOG0948|consen 199 --VGLMTGDVT----------------------------INPDASCLVMTTEILRSMLYRGS-EVMREVAWVIFDEIHYM 247 (1041)
T ss_pred --cceeeccee----------------------------eCCCCceeeeHHHHHHHHHhccc-hHhheeeeEEeeeehhc
Confidence 556666654 34556889999999999998855 44778999999999998
Q ss_pred hhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccccc--ccc
Q 011620 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA--QLD 287 (481)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~--~~~ 287 (481)
-+...+-.++.-+-+++ ...+.+++|||+++...+.. ...
T Consensus 248 RDkERGVVWEETIIllP--------------------------------------~~vr~VFLSATiPNA~qFAeWI~~i 289 (1041)
T KOG0948|consen 248 RDKERGVVWEETIILLP--------------------------------------DNVRFVFLSATIPNARQFAEWICHI 289 (1041)
T ss_pred cccccceeeeeeEEecc--------------------------------------ccceEEEEeccCCCHHHHHHHHHHH
Confidence 66655433322222221 34488999999976554432 222
Q ss_pred cCCceeeecCCccccCCcccccc---------eeccc-------------------------------------------
Q 011620 288 LHHPLFLTTGETRYKLPERLESY---------KLICE------------------------------------------- 315 (481)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~------------------------------------------- 315 (481)
-..|..+...+..+ ...+|| +...+
T Consensus 290 hkQPcHVVYTdyRP---TPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~ 366 (1041)
T KOG0948|consen 290 HKQPCHVVYTDYRP---TPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGP 366 (1041)
T ss_pred hcCCceEEeecCCC---CcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCC
Confidence 23343332222111 111111 00000
Q ss_pred CCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCC------------------------------------cc
Q 011620 316 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE------------------------------------LR 359 (481)
Q Consensus 316 ~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~------------------------------------~~ 359 (481)
.......+...+-..+..++|||+-|++.|+.++-.+.+..- ..
T Consensus 367 ~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~ 446 (1041)
T KOG0948|consen 367 GDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLR 446 (1041)
T ss_pred CcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHH
Confidence 001112233333344567999999999999999877665210 01
Q ss_pred eEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCC---------CChhhHHHHHhhhhcCC
Q 011620 360 IKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYIHRAGRTARAG 430 (481)
Q Consensus 360 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p---------~s~~~~~Q~~GR~~R~~ 430 (481)
-.+.++|+|+-+--++-+.=.|..|=.++|+||.+++.|+|.|.- .|++...- -|..+|+|+.|||||.|
T Consensus 447 RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAk-TVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG 525 (1041)
T KOG0948|consen 447 RGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAK-TVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRG 525 (1041)
T ss_pred hccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcce-eEEEeeccccCCcceeeecccceEEecccccccC
Confidence 247889999999888877778999999999999999999999954 45543311 24568999999999988
Q ss_pred CC--CcEEEEEeC
Q 011620 431 QL--GRCFTLLHK 441 (481)
Q Consensus 431 ~~--g~~i~~~~~ 441 (481)
.+ |.|+++++.
T Consensus 526 ~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 526 IDDRGIVILMIDE 538 (1041)
T ss_pred CCCCceEEEEecC
Confidence 65 556666653
No 105
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.92 E-value=1.5e-23 Score=212.89 Aligned_cols=323 Identities=15% Similarity=0.135 Sum_probs=188.1
Q ss_pred CCHHHHHHHHHcCC----------CCCchhhHHHHHhhhCCCCC------CCCEEEECCCCchHHHHhHHHHHHHHHhhc
Q 011620 35 LDPRLKVALQNMGI----------SSLFPVQVAVWQETIGPGLF------ERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (481)
Q Consensus 35 l~~~~~~~l~~~~~----------~~~~~~Q~~a~~~~~~~~~~------~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~ 98 (481)
-++.+++.+..+-+ .-+|++|.+|+..+++.+.. .+..+|++|||||||++++..+...+ . .
T Consensus 213 ~~~~ll~~i~~~~~~~~~~~~~~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~-~ 290 (667)
T TIGR00348 213 KKERLLDFIRNFIIFDKDTGLVTKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-E-L 290 (667)
T ss_pred CHHHHHHHHHheEEEECCCCceeeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-h-h
Confidence 45566676654211 23899999999998876543 35799999999999999877554433 2 2
Q ss_pred cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEe
Q 011620 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (481)
Q Consensus 99 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~ 178 (481)
.+.+++||++|+.+|..|+.+.|..+.... + .+..+ .......+. .....|+|+
T Consensus 291 ~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~---~---~~~~s-~~~L~~~l~-------------------~~~~~iivt 344 (667)
T TIGR00348 291 LKNPKVFFVVDRRELDYQLMKEFQSLQKDC---A---ERIES-IAELKRLLE-------------------KDDGGIIIT 344 (667)
T ss_pred cCCCeEEEEECcHHHHHHHHHHHHhhCCCC---C---cccCC-HHHHHHHHh-------------------CCCCCEEEE
Confidence 345689999999999999999999885321 0 11111 111111111 123589999
Q ss_pred CChhHHHhhhcC-CCcccCCc-cEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhcccc
Q 011620 179 TPGRLMDHINAT-RGFTLEHL-CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (481)
Q Consensus 179 T~~~l~~~l~~~-~~~~~~~~-~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (481)
|.++|...+... ..+..... .+||+||||+.....+...+.. .+
T Consensus 345 TiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~~---~~------------------------------- 390 (667)
T TIGR00348 345 TIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLKK---AL------------------------------- 390 (667)
T ss_pred EhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHHh---hC-------------------------------
Confidence 999998644321 11211112 2899999998765554433322 22
Q ss_pred ccCCCCCCcceeeEEEeEEEecCccccc-cccc--CCceeeec-----CCccccCCc------------------ccccc
Q 011620 257 RGFKDKPYPRLVKMVLSATLTQDPNKLA-QLDL--HHPLFLTT-----GETRYKLPE------------------RLESY 310 (481)
Q Consensus 257 ~~~~~~~~~~~~~i~~Sat~~~~~~~~~-~~~~--~~~~~~~~-----~~~~~~~~~------------------~~~~~ 310 (481)
+....+++||||........ ..+. ....+... ...+...+- .....
T Consensus 391 --------p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~ 462 (667)
T TIGR00348 391 --------KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEI 462 (667)
T ss_pred --------CCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHH
Confidence 11257788888753211100 0000 00000000 000000000 00000
Q ss_pred eecccC-----------------------CCcHHHHH-HHHH------hcCCCcEEEEcCCchhHHHHHHHHhhcCCcc-
Q 011620 311 KLICES-----------------------KLKPLYLV-ALLQ------SLGEEKCIVFTSSVESTHRLCTLLNHFGELR- 359 (481)
Q Consensus 311 ~~~~~~-----------------------~~k~~~l~-~~l~------~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~- 359 (481)
....+. ......+. .+++ ...+++++|+|.++.+|..+.+.|.+..+..
T Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~ 542 (667)
T TIGR00348 463 FELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF 542 (667)
T ss_pred HHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc
Confidence 000000 00001111 1111 1124799999999999999999987653322
Q ss_pred -eEEEEccCccChH---------------------HHHHHHHHHhc-CCceEEEecccccccCCCCCCCEEEEecCCCCh
Q 011620 360 -IKIKEYSGLQRQS---------------------VRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416 (481)
Q Consensus 360 -~~~~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~ 416 (481)
.....+++..+.. ....++++|++ ++.+|||+++++.+|+|.|.+++++...+..+
T Consensus 543 ~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~- 621 (667)
T TIGR00348 543 EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY- 621 (667)
T ss_pred CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-
Confidence 2333444432221 23478889976 67899999999999999999999987775555
Q ss_pred hhHHHHHhhhhc
Q 011620 417 KTYIHRAGRTAR 428 (481)
Q Consensus 417 ~~~~Q~~GR~~R 428 (481)
..++|.+||+.|
T Consensus 622 h~LlQai~R~nR 633 (667)
T TIGR00348 622 HGLLQAIARTNR 633 (667)
T ss_pred cHHHHHHHHhcc
Confidence 468999999999
No 106
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.8e-22 Score=199.69 Aligned_cols=319 Identities=23% Similarity=0.278 Sum_probs=194.5
Q ss_pred CCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011620 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (481)
|+ .|+..|+-= ...+..|+++.+.||||.|||...++..+... .+|.+++++.||..|+.|.++.+.++..
T Consensus 80 G~-~~ws~QR~W----akR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a----~kgkr~yii~PT~~Lv~Q~~~kl~~~~e 150 (1187)
T COG1110 80 GF-RPWSAQRVW----AKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA----KKGKRVYIIVPTTTLVRQVYERLKKFAE 150 (1187)
T ss_pred CC-CchHHHHHH----HHHHHcCCceEEEcCCCCchhHHHHHHHHHHH----hcCCeEEEEecCHHHHHHHHHHHHHHHh
Confidence 55 899999643 33445599999999999999987555443322 2345899999999999999999999987
Q ss_pred ccC-ceEEE-eecCCchHHHHHHhhhcCccccCccCCchhHHHhhcc-CCcEEEeCChhHHHhhhcCCCcccCCccEEEE
Q 011620 127 AVG-LSVGL-AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 127 ~~~-~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iVi 203 (481)
..+ ..+.. +|+..+.... +.....+.. ..+|+|+|.+-|...+..... .+|++|++
T Consensus 151 ~~~~~~~~~~yh~~l~~~ek------------------ee~le~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfifV 209 (1187)
T COG1110 151 DAGSLDVLVVYHSALPTKEK------------------EEALERIESGDFDILITTSQFLSKRFEELSK---LKFDFIFV 209 (1187)
T ss_pred hcCCcceeeeeccccchHHH------------------HHHHHHHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEEE
Confidence 655 44444 4454343332 122223333 589999999988887776433 35899999
Q ss_pred ecchhhhhHhHHhHHHHHHHhcccCccccccccc-ccc------ccccccchhhhhccccccCCCCCCcceeeEEEeEEE
Q 011620 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS-TFL------PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276 (481)
Q Consensus 204 DE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~ 276 (481)
|++|.++..+ ..+..++.++.-.......... ..+ .+..+........ .++-....-...-++++.|||.
T Consensus 210 DDVDA~Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~-~e~~~~~~r~k~g~LvvsSATg 286 (1187)
T COG1110 210 DDVDAILKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELRE-VEREREKKRRKLGILVVSSATG 286 (1187)
T ss_pred ccHHHHHhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-HHHHHHHhccCCceEEEeeccC
Confidence 9999887654 3444444433211100000000 000 0000000000000 0000111112334789999998
Q ss_pred ecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCC---chhHHHHHHHHh
Q 011620 277 TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS---VESTHRLCTLLN 353 (481)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s---~~~~~~l~~~l~ 353 (481)
.+......- .....-+..+.....+.+ +.+.+... .-...+.++++... ..+|||++. ++.++.+++.|.
T Consensus 287 ~~rg~R~~L--fReLlgFevG~~~~~LRN-IvD~y~~~---~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr 359 (1187)
T COG1110 287 KPRGSRLKL--FRELLGFEVGSGGEGLRN-IVDIYVES---ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLR 359 (1187)
T ss_pred CCCCchHHH--HHHHhCCccCccchhhhh-eeeeeccC---ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHH
Confidence 655432110 011111222222212222 22222222 44455566666654 478999999 899999999999
Q ss_pred hcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEec----ccccccCCCCC-CCEEEEecCC
Q 011620 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYDKP 413 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t----~~l~~Gidi~~-~~~vI~~~~p 413 (481)
..| +++..+|+. ....++.|..|+.++||++ ..+.+|+|+|. +..+|+++.|
T Consensus 360 ~~G---i~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 360 SHG---INAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hcC---ceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 888 899888874 3678899999999999886 57889999996 8899998877
No 107
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.91 E-value=1.9e-22 Score=193.37 Aligned_cols=365 Identities=19% Similarity=0.179 Sum_probs=229.1
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHh-hccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (481)
..+|+||.+-++.++.....|-+.|+...+|.|||+..+. .+.++.. ...+|| -||++|...|.. |.+++.+|++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs-~l~yl~~~~~~~GP-fLVi~P~StL~N-W~~Ef~rf~P- 241 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTIS-LLGYLKGRKGIPGP-FLVIAPKSTLDN-WMNEFKRFTP- 241 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHH-HHHHHHHhcCCCCC-eEEEeeHhhHHH-HHHHHHHhCC-
Confidence 3799999999998887666677899999999999998554 3334333 334565 899999988765 9999999998
Q ss_pred cCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecch
Q 011620 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H 207 (481)
++++.+++|+.........-.. .....+|+|||+++.+..-.- +.--.++++||||+|
T Consensus 242 -~l~~~~~~Gdk~eR~~~~r~~~------------------~~~~fdV~iTsYEi~i~dk~~---lk~~~W~ylvIDEaH 299 (971)
T KOG0385|consen 242 -SLNVVVYHGDKEERAALRRDIM------------------LPGRFDVCITSYEIAIKDKSF---LKKFNWRYLVIDEAH 299 (971)
T ss_pred -CcceEEEeCCHHHHHHHHHHhh------------------ccCCCceEeehHHHHHhhHHH---HhcCCceEEEechhh
Confidence 6889999998754443322111 123589999999998765322 222347899999999
Q ss_pred hhhhHhHHhHHHHHHHhcccC------------------------cccccccccccccccccc------chhhhh-----
Q 011620 208 RLLREAYQAWLPTVLQLTRSD------------------------NENRFSDASTFLPSAFGS------LKTIRR----- 252 (481)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~~~------------------------~~~~~~~~~~~~~~~~~~------~~~~~~----- 252 (481)
++-.... .+..++..+... -++.|.+. ..+.+++.. ...+..
T Consensus 300 RiKN~~s--~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~-e~F~swF~~~~~~~~~e~v~~Lh~vL 376 (971)
T KOG0385|consen 300 RIKNEKS--KLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSA-EDFDSWFDFTNCEGDQELVSRLHKVL 376 (971)
T ss_pred hhcchhh--HHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCH-HHHHHHHcccccccCHHHHHHHHhhh
Confidence 9855432 122233322221 11111111 111111111 000000
Q ss_pred -ccccc---cCCCCCCc--ceeeEEEeEEEe----------cC-----------------cccccccccCCceeeecCCc
Q 011620 253 -CGVER---GFKDKPYP--RLVKMVLSATLT----------QD-----------------PNKLAQLDLHHPLFLTTGET 299 (481)
Q Consensus 253 -~~~~~---~~~~~~~~--~~~~i~~Sat~~----------~~-----------------~~~~~~~~~~~~~~~~~~~~ 299 (481)
..+.+ ..-....+ ....+..+-+.. .+ +.-..+..+..|+.+.....
T Consensus 377 ~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~eP 456 (971)
T KOG0385|consen 377 RPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEP 456 (971)
T ss_pred hHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCC
Confidence 00000 00000011 111111111100 00 00112234444554443222
Q ss_pred cccCCcccccceecccCCCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHH
Q 011620 300 RYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377 (481)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~ 377 (481)
.+. .......+....|...|..++... .+.++|||..-....+-+.++..-.+ +....+.|.++..+|...
T Consensus 457 g~p----yttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~---y~ycRiDGSt~~eeR~~a 529 (971)
T KOG0385|consen 457 GPP----YTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRG---YEYCRLDGSTSHEEREDA 529 (971)
T ss_pred CCC----CCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcC---ceeEeecCCCCcHHHHHH
Confidence 111 111122233445555555555433 57799999999888888888887766 899999999999999999
Q ss_pred HHHHhcCC---ceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhh
Q 011620 378 LKAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGC 449 (481)
Q Consensus 378 ~~~f~~g~---~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~ 449 (481)
++.|.... .-.|++|.+.+.|||+..++.||+||..|++..=.|...|++|.|+...+.+|-...+...-+.
T Consensus 530 I~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~ 604 (971)
T KOG0385|consen 530 IEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEK 604 (971)
T ss_pred HHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHH
Confidence 99999643 3358999999999999999999999999999999999999999999998888766555443333
No 108
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.91 E-value=2.9e-23 Score=177.00 Aligned_cols=148 Identities=33% Similarity=0.539 Sum_probs=122.2
Q ss_pred chhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCce
Q 011620 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131 (481)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 131 (481)
+|+|.++++.+.+ ++++++.+|||+|||++++.+++..+... +..++++++|+++|++|..+.+..++...+++
T Consensus 1 t~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~--~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG--KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT--SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC--CCceEEEEeecccccccccccccccccccccc
Confidence 5899999999886 89999999999999999999999888765 23379999999999999999999998877789
Q ss_pred EEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhh
Q 011620 132 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (481)
Q Consensus 132 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~ 211 (481)
+..++++......... .+..+++|+|+||++|...+.... ..+.++++||+||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~--------------------~~~~~~~ilv~T~~~l~~~~~~~~-~~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 75 VVLLHGGQSISEDQRE--------------------VLSNQADILVTTPEQLLDLISNGK-INISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp EEEESTTSCHHHHHHH--------------------HHHTTSSEEEEEHHHHHHHHHTTS-STGTTESEEEEETHHHHHH
T ss_pred cccccccccccccccc--------------------cccccccccccCcchhhccccccc-cccccceeeccCccccccc
Confidence 9999888775433222 123567999999999999998743 3667799999999999988
Q ss_pred HhHHhHHHHHHHhcc
Q 011620 212 EAYQAWLPTVLQLTR 226 (481)
Q Consensus 212 ~~~~~~~~~i~~~~~ 226 (481)
..+...+..+.....
T Consensus 134 ~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 134 ETFRAMLKSILRRLK 148 (169)
T ss_dssp TTHHHHHHHHHHHSH
T ss_pred ccHHHHHHHHHHHhc
Confidence 777777777777654
No 109
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.91 E-value=6.7e-22 Score=204.25 Aligned_cols=378 Identities=16% Similarity=0.178 Sum_probs=212.3
Q ss_pred CCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH-HHHHHHhc
Q 011620 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV-KDVFAAIA 125 (481)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~-~~~~~~~~ 125 (481)
|| ++|+-|.+....+.+++..++.++++|+||+|||++|++|++... .+.+++|+|||++|++|+ .+++..+.
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 55 899999998888888888888999999999999999999987643 245799999999999998 57788777
Q ss_pred cccCceEEEeecCCchHHH--HHHhhhcCc------------------ccc-------------------------Cc-c
Q 011620 126 PAVGLSVGLAVGQSSIADE--ISELIKRPK------------------LEA-------------------------GI-C 159 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~--~~~~~~~~~------------------~~~-------------------------~~-~ 159 (481)
...++++..+.|+.++.-. ....+..+. ..+ +. |
T Consensus 317 ~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~c 396 (820)
T PRK07246 317 EVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSS 396 (820)
T ss_pred HhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCC
Confidence 7778888888877654211 111100000 000 00 0
Q ss_pred -CCchhHHHh---hccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhH---------HhHHHHHHHhc-
Q 011620 160 -YDPEDVLQE---LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY---------QAWLPTVLQLT- 225 (481)
Q Consensus 160 -~~~~~~~~~---~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~---------~~~~~~i~~~~- 225 (481)
+...+.+.. -...++|+|++...|...+..... +...+.+||||||++.+... ......+....
T Consensus 397 p~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~--~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (820)
T PRK07246 397 LFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD--FARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALS 474 (820)
T ss_pred CcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC--CCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHH
Confidence 101222222 235699999999988887654332 45789999999998754210 00000000000
Q ss_pred -------------------------ccCc-ccc----ccccccccccc----cccchhh----h-hccccccCC------
Q 011620 226 -------------------------RSDN-ENR----FSDASTFLPSA----FGSLKTI----R-RCGVERGFK------ 260 (481)
Q Consensus 226 -------------------------~~~~-~~~----~~~~~~~~~~~----~~~~~~~----~-~~~~~~~~~------ 260 (481)
.... ... .......+... ......+ . -.|++..-.
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~ 554 (820)
T PRK07246 475 GPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVT 554 (820)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCccee
Confidence 0000 000 00000000000 0000000 0 011111000
Q ss_pred ------------CCCC-cceeeEEEeEEEe--cCcccccccccCCceeeecCCccccCCccccccee--cccC---CCcH
Q 011620 261 ------------DKPY-PRLVKMVLSATLT--QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL--ICES---KLKP 320 (481)
Q Consensus 261 ------------~~~~-~~~~~i~~Sat~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~k~ 320 (481)
...+ ....+|++|||++ +........++......... ...... ..... ..+. ....
T Consensus 555 ~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~---~~~~~~-~~~~i~~~~p~~~~~~~~ 630 (820)
T PRK07246 555 YLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIE---KDKKQD-QLVVVDQDMPLVTETSDE 630 (820)
T ss_pred EEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCC---CChHHc-cEEEeCCCCCCCCCCChH
Confidence 0001 2246799999996 33332222232221111110 000000 00010 0111 0011
Q ss_pred HH---HHHHHH--hcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccc
Q 011620 321 LY---LVALLQ--SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (481)
Q Consensus 321 ~~---l~~~l~--~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l 395 (481)
.+ +...+. ...+++++|+++|.+..+.+++.|.... ..+ +..|... .+..++++|++++..||++|+.+
T Consensus 631 ~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~---~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sF 704 (820)
T PRK07246 631 VYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQ---VSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSF 704 (820)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcC---CcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchh
Confidence 11 222111 1356899999999999999999986542 333 4444322 25668999999888999999999
Q ss_pred cccCCCCC--CCEEEEecCCCC------------------------------hhhHHHHHhhhhcCCCCCcEEEEEeCC
Q 011620 396 TRGMDVEG--VNNVVNYDKPAY------------------------------IKTYIHRAGRTARAGQLGRCFTLLHKD 442 (481)
Q Consensus 396 ~~Gidi~~--~~~vI~~~~p~s------------------------------~~~~~Q~~GR~~R~~~~g~~i~~~~~~ 442 (481)
++|||+|+ ...||+..+|.. ...+.|.+||..|...+..+++++|..
T Consensus 705 wEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 705 WEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred hCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 99999974 566777776621 234579999999987666667776664
No 110
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.90 E-value=1.1e-22 Score=208.74 Aligned_cols=349 Identities=16% Similarity=0.144 Sum_probs=211.1
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
..+++|.+++..+......+..+++.||||.|||.+.+.++...+........+++++.|++.+.+++++.+.......+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 45899999998877644333378899999999999999888877766323566899999999999999999988765433
Q ss_pred ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhh-ccCCcEEEeCChhHHHhhhcCCCcc-c--CCccEEEEec
Q 011620 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFT-L--EHLCYLVVDE 205 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~I~v~T~~~l~~~l~~~~~~~-~--~~~~~iViDE 205 (481)
......++.....-... ....... .....+.. ..-..+.++|+............+. + -..+++|+||
T Consensus 275 ~~~~~~h~~~~~~~~~~-----~~~~~~~---~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 275 VIGKSLHSSSKEPLLLE-----PDQDILL---TLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred cccccccccccchhhhc-----cccccce---eEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 32221233222111100 0000000 00000000 0112344555555444322222222 1 1247899999
Q ss_pred chhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccc
Q 011620 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (481)
Q Consensus 206 ~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~ 285 (481)
+|.+.+......+..++..... .+..++++|||+++.......
T Consensus 347 ~h~~~~~~~~~~l~~~i~~l~~-------------------------------------~g~~ill~SATlP~~~~~~l~ 389 (733)
T COG1203 347 VHLYADETMLAALLALLEALAE-------------------------------------AGVPVLLMSATLPPFLKEKLK 389 (733)
T ss_pred HHhhcccchHHHHHHHHHHHHh-------------------------------------CCCCEEEEecCCCHHHHHHHH
Confidence 9987666333333334333322 223789999999877666554
Q ss_pred cccCCceeeecCCc-cccCCcccccceecccCCCc--HHHHHHHH-HhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceE
Q 011620 286 LDLHHPLFLTTGET-RYKLPERLESYKLICESKLK--PLYLVALL-QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361 (481)
Q Consensus 286 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k--~~~l~~~l-~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~ 361 (481)
.............. .....+.............. ........ ....+++++|.||++..|.+++..|+..+. +
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~---~ 466 (733)
T COG1203 390 KALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP---K 466 (733)
T ss_pred HHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC---C
Confidence 43333222222111 00000000000000000000 01111111 122467999999999999999999998763 7
Q ss_pred EEEccCccChHHHHHHHHHHh----cCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCC--CCCcE
Q 011620 362 IKEYSGLQRQSVRSKTLKAFR----EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG--QLGRC 435 (481)
Q Consensus 362 ~~~~~~~~~~~~r~~~~~~f~----~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~--~~g~~ 435 (481)
+.++||.+...+|.+.++.+. .++..|+|+|++++.|+|+. .+.+|- -+..++.++||+||++|.| ..|.+
T Consensus 467 v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~ 543 (733)
T COG1203 467 VLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKI 543 (733)
T ss_pred EEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCce
Confidence 999999999999999888654 46788999999999999985 666653 3556899999999999988 56777
Q ss_pred EEEEeCCcchhhhh
Q 011620 436 FTLLHKDEVCLVGC 449 (481)
Q Consensus 436 i~~~~~~~~~~~~~ 449 (481)
+++...........
T Consensus 544 ~v~~~~~~~~~~~~ 557 (733)
T COG1203 544 YVYNDEERGPYLKY 557 (733)
T ss_pred eEeecccCCCchhh
Confidence 77777655544443
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.6e-22 Score=200.80 Aligned_cols=333 Identities=20% Similarity=0.188 Sum_probs=213.8
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (481)
..+++-|..|...+..........++.+.||||||.+|+-.+...+..+ ..+|+++|-..|..|+...|+.. +
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G----kqvLvLVPEI~Ltpq~~~rf~~r---F 269 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG----KQVLVLVPEIALTPQLLARFKAR---F 269 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC----CEEEEEeccccchHHHHHHHHHH---h
Confidence 4688999999998887652336799999999999999999888877654 47999999999999988888776 4
Q ss_pred CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhc-cCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecch
Q 011620 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H 207 (481)
|.++..++++.+..+.. +.|.... +...|+|+|-.. -...++++++||+||-|
T Consensus 270 g~~v~vlHS~Ls~~er~------------------~~W~~~~~G~~~vVIGtRSA--------lF~Pf~~LGLIIvDEEH 323 (730)
T COG1198 270 GAKVAVLHSGLSPGERY------------------RVWRRARRGEARVVIGTRSA--------LFLPFKNLGLIIVDEEH 323 (730)
T ss_pred CCChhhhcccCChHHHH------------------HHHHHHhcCCceEEEEechh--------hcCchhhccEEEEeccc
Confidence 67899999998877663 4455544 458999999222 23458889999999999
Q ss_pred hhhhH---hHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccccc
Q 011620 208 RLLRE---AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284 (481)
Q Consensus 208 ~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~ 284 (481)
.-.-. ......+.+.-. .......++|+-|||++-.....+
T Consensus 324 D~sYKq~~~prYhARdvA~~------------------------------------Ra~~~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 324 DSSYKQEDGPRYHARDVAVL------------------------------------RAKKENAPVVLGSATPSLESYANA 367 (730)
T ss_pred cccccCCcCCCcCHHHHHHH------------------------------------HHHHhCCCEEEecCCCCHHHHHhh
Confidence 53111 111111111111 111134478999999974444443
Q ss_pred ccccCCceeeecCCccccCCcccccceecccCCCc----HHHHHHHHHhc--CCCcEEEEcCCchhH-------------
Q 011620 285 QLDLHHPLFLTTGETRYKLPERLESYKLICESKLK----PLYLVALLQSL--GEEKCIVFTSSVEST------------- 345 (481)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~~l~~~--~~~~~lVf~~s~~~~------------- 345 (481)
..+.+.............. ..+............ ...++..+++. .++.+|+|.|.+-.+
T Consensus 368 ~~g~y~~~~L~~R~~~a~~-p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~ 446 (730)
T COG1198 368 ESGKYKLLRLTNRAGRARL-PRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAE 446 (730)
T ss_pred hcCceEEEEccccccccCC-CcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCccc
Confidence 3222222222111111111 111111111111111 12344444322 455677777666333
Q ss_pred -----------------------------------------------HHHHHHHhhcCCcceEEEEccCccChHH--HHH
Q 011620 346 -----------------------------------------------HRLCTLLNHFGELRIKIKEYSGLQRQSV--RSK 376 (481)
Q Consensus 346 -----------------------------------------------~~l~~~l~~~~~~~~~~~~~~~~~~~~~--r~~ 376 (481)
+++.+.|.+.- ++.++..+.++..... -..
T Consensus 447 Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F-P~~rv~r~d~Dtt~~k~~~~~ 525 (730)
T COG1198 447 CPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF-PGARIIRIDSDTTRRKGALED 525 (730)
T ss_pred CCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC-CCCcEEEEccccccchhhHHH
Confidence 33444443331 2356777777666533 457
Q ss_pred HHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCC------------ChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------------YIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 377 ~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~------------s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
.++.|.+|+.+|||+|+++..|.|+|+++.|...+... ....+.|-.||+||.+.+|.+++-.-..+-
T Consensus 526 ~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 526 LLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred HHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 89999999999999999999999999999887766431 234678999999999889998888776666
Q ss_pred hhhhhhcc
Q 011620 445 CLVGCLTP 452 (481)
Q Consensus 445 ~~~~~i~~ 452 (481)
..+..+..
T Consensus 606 p~i~~~~~ 613 (730)
T COG1198 606 PAIQALKR 613 (730)
T ss_pred HHHHHHHh
Confidence 66655443
No 112
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.89 E-value=4.2e-22 Score=199.92 Aligned_cols=367 Identities=18% Similarity=0.196 Sum_probs=228.0
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (481)
.++|.||.+-++.++..--.++++|+.-.+|.|||..-+..+...+......|| .|+++|...+.. |.+.|..+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gp-flvvvplst~~~-W~~ef~~w~--- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGP-FLVVVPLSTITA-WEREFETWT--- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCC-eEEEeehhhhHH-HHHHHHHHh---
Confidence 479999999888766544457899999999999998855533333333334554 899999987765 888888885
Q ss_pred CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh
Q 011620 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~ 208 (481)
++++.+++|.......++.....-... .-.-.+++++||++.++.--...+.+ .+.+++|||||+
T Consensus 444 ~mn~i~y~g~~~sr~~i~~ye~~~~~~------------~~~lkf~~lltTye~~LkDk~~L~~i---~w~~~~vDeahr 508 (1373)
T KOG0384|consen 444 DMNVIVYHGNLESRQLIRQYEFYHSSN------------TKKLKFNALLTTYEIVLKDKAELSKI---PWRYLLVDEAHR 508 (1373)
T ss_pred hhceeeeecchhHHHHHHHHHheecCC------------ccccccceeehhhHHHhccHhhhccC---CcceeeecHHhh
Confidence 789999999987777665543211100 00013689999999987654443333 477999999999
Q ss_pred hhhHhH----------------------HhHHHHHHHhcccCccccccccccccccc-------cccchh-hhhccccc-
Q 011620 209 LLREAY----------------------QAWLPTVLQLTRSDNENRFSDASTFLPSA-------FGSLKT-IRRCGVER- 257 (481)
Q Consensus 209 ~~~~~~----------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~- 257 (481)
+-+... ...+..+..++.-..+..|.....+.... ...+.. +.+..+.+
T Consensus 509 LkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~ 588 (1373)
T KOG0384|consen 509 LKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRL 588 (1373)
T ss_pred cCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHH
Confidence 864321 12223333333333333333333333222 000000 00000000
Q ss_pred --cCCCC-CCcceeeE--EEeE--------EEecCcc-----------------cccccccCCceeeecCCccccCCcc-
Q 011620 258 --GFKDK-PYPRLVKM--VLSA--------TLTQDPN-----------------KLAQLDLHHPLFLTTGETRYKLPER- 306 (481)
Q Consensus 258 --~~~~~-~~~~~~~i--~~Sa--------t~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~- 306 (481)
..... +-..-+++ -+|+ -+..+.. -.....+..|+.+............
T Consensus 589 kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~ 668 (1373)
T KOG0384|consen 589 KKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRD 668 (1373)
T ss_pred HhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhh
Confidence 11110 00111111 1111 1111111 1112333344443332221110000
Q ss_pred ---cccceecccCCCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHH
Q 011620 307 ---LESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (481)
Q Consensus 307 ---~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f 381 (481)
-..+.....+..|...|..+|... .+.++|||..-+.+.+.|+++|...+ +....+.|......|++.++.|
T Consensus 669 ~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~---ypfQRLDGsvrgelRq~AIDhF 745 (1373)
T KOG0384|consen 669 KMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRG---YPFQRLDGSVRGELRQQAIDHF 745 (1373)
T ss_pred cchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcC---CcceeccCCcchHHHHHHHHhc
Confidence 011222233444444444444433 46799999999999999999999887 8999999999999999999999
Q ss_pred hc---CCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEE
Q 011620 382 RE---GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (481)
Q Consensus 382 ~~---g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~ 438 (481)
.+ .....|+||.+.+-|||+..++.||+||..|++.+=+|...|++|.|+...|-+|
T Consensus 746 nap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVY 805 (1373)
T KOG0384|consen 746 NAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVY 805 (1373)
T ss_pred cCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEE
Confidence 95 3577899999999999999999999999999999999999999999988766555
No 113
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=1.3e-20 Score=189.29 Aligned_cols=132 Identities=20% Similarity=0.262 Sum_probs=114.3
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEeccc
Q 011620 317 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (481)
Q Consensus 317 ~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~ 394 (481)
..+...+...++.. .+.++||||++...++.+++.|.+.+ +.+..+|++++..+|.++++.|+.|+..|||||+.
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g---i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG---IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc---cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcCh
Confidence 34555666666543 46789999999999999999999877 88999999999999999999999999999999999
Q ss_pred ccccCCCCCCCEEEEec-----CCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcc
Q 011620 395 MTRGMDVEGVNNVVNYD-----KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTP 452 (481)
Q Consensus 395 l~~Gidi~~~~~vI~~~-----~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~ 452 (481)
+++|+|+|++++||+++ .|.+...|+||+||+||. ..|.+++|++..+..+...+.+
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 99999999999999988 788999999999999998 6899999999766555444444
No 114
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=3.2e-21 Score=176.57 Aligned_cols=314 Identities=20% Similarity=0.203 Sum_probs=209.7
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
.+||||...+..++.+.. .++.+|..|+|+|||++.+.++. .+ +.+||++|.+...++||..++..++...+
T Consensus 302 ~iRpYQEksL~KMFGNgR-ARSGiIVLPCGAGKtLVGvTAa~-ti------kK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKTLVGVTAAC-TI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred ccCchHHHHHHHHhCCCc-ccCceEEEecCCCCceeeeeeee-ee------cccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 699999999988875332 36789999999999998666443 22 22699999999999999999999988777
Q ss_pred ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCC-------CcccCCccEEE
Q 011620 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-------GFTLEHLCYLV 202 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~-------~~~~~~~~~iV 202 (481)
-.++.++++..- ....++.|+|+|+.++..--.+.. .+.-..+++++
T Consensus 374 ~~i~rFTsd~Ke--------------------------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGlll 427 (776)
T KOG1123|consen 374 DQICRFTSDAKE--------------------------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLL 427 (776)
T ss_pred cceEEeeccccc--------------------------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEE
Confidence 777777776431 133567899999988754322110 01133578999
Q ss_pred EecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccc
Q 011620 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (481)
Q Consensus 203 iDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~ 282 (481)
+||+|.+...-|++.+..+-.++ .++++||+...-+.
T Consensus 428 lDEVHvvPA~MFRRVlsiv~aHc-------------------------------------------KLGLTATLvREDdK 464 (776)
T KOG1123|consen 428 LDEVHVVPAKMFRRVLSIVQAHC-------------------------------------------KLGLTATLVREDDK 464 (776)
T ss_pred eehhccchHHHHHHHHHHHHHHh-------------------------------------------hccceeEEeecccc
Confidence 99999998887777666665554 35667777644333
Q ss_pred ccc-cccCCceeeecC-----Cccc-------c-----CCcccc-----------cceecccCC-CcHHHHHHHHHhcCC
Q 011620 283 LAQ-LDLHHPLFLTTG-----ETRY-------K-----LPERLE-----------SYKLICESK-LKPLYLVALLQSLGE 332 (481)
Q Consensus 283 ~~~-~~~~~~~~~~~~-----~~~~-------~-----~~~~~~-----------~~~~~~~~~-~k~~~l~~~l~~~~~ 332 (481)
+.. .++-.|-.+... ..+. . .++.+. .+++-.+.. ....+|+.. ...++
T Consensus 465 I~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~-HE~Rg 543 (776)
T KOG1123|consen 465 ITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKF-HERRG 543 (776)
T ss_pred ccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHH-HHhcC
Confidence 221 111111111110 0000 0 000000 001111111 112223222 23368
Q ss_pred CcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhc-CCceEEEecccccccCCCCCCCEEEEec
Q 011620 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLi~t~~l~~Gidi~~~~~vI~~~ 411 (481)
.++|||..++.....++-.|.+ -++.|..++.+|..+++.|+- ..++-++.+......||+|..+++|..+
T Consensus 544 DKiIVFsDnvfALk~YAikl~K--------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 544 DKIIVFSDNVFALKEYAIKLGK--------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQIS 615 (776)
T ss_pred CeEEEEeccHHHHHHHHHHcCC--------ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEc
Confidence 8999999999888888776643 246788999999999999994 5688899999999999999999999886
Q ss_pred C-CCChhhHHHHHhhhhcCCC------CCcEEEEEeCCcchhhhh
Q 011620 412 K-PAYIKTYIHRAGRTARAGQ------LGRCFTLLHKDEVCLVGC 449 (481)
Q Consensus 412 ~-p~s~~~~~Q~~GR~~R~~~------~g~~i~~~~~~~~~~~~~ 449 (481)
. -.|..+-.||+||..|..+ +...+.+++.+.+++...
T Consensus 616 SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YS 660 (776)
T KOG1123|consen 616 SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYS 660 (776)
T ss_pred ccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhh
Confidence 4 4678889999999998532 345677777777766553
No 115
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.4e-21 Score=196.99 Aligned_cols=303 Identities=21% Similarity=0.255 Sum_probs=194.2
Q ss_pred CCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH-hccccCceEEEeecCCchH
Q 011620 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQSSIA 142 (481)
Q Consensus 64 ~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~v~~~~~~~~~~ 142 (481)
+++..++.++|.|+||+|||...-..+++.-. ..+..+.++-|++--+..+++.+.. +....|-.|+...-.
T Consensus 60 ~ai~~~~vvii~getGsGKTTqlP~~lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRf---- 132 (845)
T COG1643 60 KAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRF---- 132 (845)
T ss_pred HHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEe----
Confidence 33334788999999999999975444444332 2233577777999766666665544 333333233222111
Q ss_pred HHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhh-hhHhH-HhHHHH
Q 011620 143 DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-LREAY-QAWLPT 220 (481)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~-~~~~~-~~~~~~ 220 (481)
+. .......|-++|.+.|.+.+..+. .++.+++||+||+|.= ++..+ ...+..
T Consensus 133 e~-----------------------~~s~~Trik~mTdGiLlrei~~D~--~Ls~ys~vIiDEaHERSl~tDilLgllk~ 187 (845)
T COG1643 133 ES-----------------------KVSPRTRIKVMTDGILLREIQNDP--LLSGYSVVIIDEAHERSLNTDILLGLLKD 187 (845)
T ss_pred ec-----------------------cCCCCceeEEeccHHHHHHHhhCc--ccccCCEEEEcchhhhhHHHHHHHHHHHH
Confidence 11 011335899999999999988754 3779999999999962 11111 111122
Q ss_pred HHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCcc
Q 011620 221 VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR 300 (481)
Q Consensus 221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (481)
+....+ ...++|.||||+. ...+...+..-|++...+..-
T Consensus 188 ~~~~rr--------------------------------------~DLKiIimSATld--~~rfs~~f~~apvi~i~GR~f 227 (845)
T COG1643 188 LLARRR--------------------------------------DDLKLIIMSATLD--AERFSAYFGNAPVIEIEGRTY 227 (845)
T ss_pred HHhhcC--------------------------------------CCceEEEEecccC--HHHHHHHcCCCCEEEecCCcc
Confidence 121111 1248999999984 333333333344444333321
Q ss_pred ccCCcccccceec-ccCCC-cHHHHHHH---HHhcCCCcEEEEcCCchhHHHHHHHHhhc-CCcceEEEEccCccChHHH
Q 011620 301 YKLPERLESYKLI-CESKL-KPLYLVAL---LQSLGEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVR 374 (481)
Q Consensus 301 ~~~~~~~~~~~~~-~~~~~-k~~~l~~~---l~~~~~~~~lVf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~r 374 (481)
.+ +.++.. ..... -...+... ......+.+|||.+...+.+..++.|.+. -.....+..+||.++..++
T Consensus 228 -PV----ei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ 302 (845)
T COG1643 228 -PV----EIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQ 302 (845)
T ss_pred -ce----EEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHH
Confidence 11 111111 11111 11122222 22335789999999999999999999872 2245789999999999999
Q ss_pred HHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecC------------------CCChhhHHHHHhhhhcCCCCCcEE
Q 011620 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQLGRCF 436 (481)
Q Consensus 375 ~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~------------------p~s~~~~~Q~~GR~~R~~~~g~~i 436 (481)
..+++--..|+.+|+++|+++++++.||++..||.-+. |-|.++..||.||+||.+ +|.|+
T Consensus 303 ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicy 381 (845)
T COG1643 303 VRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICY 381 (845)
T ss_pred HhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEE
Confidence 88776666676779999999999999999999997553 356778899999999984 89999
Q ss_pred EEEeCCcc
Q 011620 437 TLLHKDEV 444 (481)
Q Consensus 437 ~~~~~~~~ 444 (481)
-+++.++.
T Consensus 382 RLyse~~~ 389 (845)
T COG1643 382 RLYSEEDF 389 (845)
T ss_pred EecCHHHH
Confidence 99987443
No 116
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.87 E-value=5.1e-20 Score=193.96 Aligned_cols=160 Identities=14% Similarity=0.155 Sum_probs=106.2
Q ss_pred CCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHH-HHHHhc
Q 011620 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD-VFAAIA 125 (481)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~-~~~~~~ 125 (481)
|| ++|+-|.+.+..+.+++..++.++++||||+|||++|++|++...... +.+++|.|+|+.|.+|+.. ++..+.
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~---~~~vvIsT~T~~LQ~Ql~~kDiP~L~ 330 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK---EEPVVISTYTIQLQQQLLEKDIPLLQ 330 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc---CCeEEEEcCCHHHHHHHHHhhHHHHH
Confidence 44 899999999998888888888999999999999999999998665432 3469999999999999764 443332
Q ss_pred ccc--CceEEEeecCCchHH--HHHHhhhc------------------Ccc----------------------ccCc-c-
Q 011620 126 PAV--GLSVGLAVGQSSIAD--EISELIKR------------------PKL----------------------EAGI-C- 159 (481)
Q Consensus 126 ~~~--~~~v~~~~~~~~~~~--~~~~~~~~------------------~~~----------------------~~~~-~- 159 (481)
..+ ++++..+.|...+.- .....+.. ... +.+. |
T Consensus 331 ~~~~~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~~~c~ 410 (928)
T PRK08074 331 KIFPFPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGESDG 410 (928)
T ss_pred HHcCCCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccCcccC
Confidence 222 567777777665311 00000000 000 0000 1
Q ss_pred ---CC--chhHH---HhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhh
Q 011620 160 ---YD--PEDVL---QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (481)
Q Consensus 160 ---~~--~~~~~---~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~ 211 (481)
|. ..+.+ +.-...++|+|++...|+..+..... .+...+++||||||++.+
T Consensus 411 ~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~~-ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 411 GKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEEP-LLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred CCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhcc-cCCCCCeEEEECCchHHH
Confidence 10 01222 23345799999999988887744232 245678999999998764
No 117
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.87 E-value=2.9e-20 Score=183.56 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=69.7
Q ss_pred hHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc-cc--cCce
Q 011620 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA-PA--VGLS 131 (481)
Q Consensus 55 Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~--~~~~ 131 (481)
|.+.+..+.+++..++.+++++|||+|||++|++|++..+... .+.+++|++||++|++|+.+++..+. .. ..++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~--~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~ 79 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER--PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQ 79 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc--cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCee
Confidence 7777788887777788999999999999999999998877532 24579999999999999999988876 33 3567
Q ss_pred EEEeecCCch
Q 011620 132 VGLAVGQSSI 141 (481)
Q Consensus 132 v~~~~~~~~~ 141 (481)
+..+.|..++
T Consensus 80 ~~~lkGr~nY 89 (636)
T TIGR03117 80 AGFFPGSQEF 89 (636)
T ss_pred EEEEECCccc
Confidence 7777777654
No 118
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.9e-20 Score=178.44 Aligned_cols=307 Identities=21% Similarity=0.269 Sum_probs=193.1
Q ss_pred hhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc-cCCccEEEEcccHHHHHHHHHHH-HHhccccCceEEEeecCC
Q 011620 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVF-AAIAPAVGLSVGLAVGQS 139 (481)
Q Consensus 62 ~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~-~~~~~~lil~P~~~L~~q~~~~~-~~~~~~~~~~v~~~~~~~ 139 (481)
++..+..++-++|.|+||||||.. +-+.+...+ ....++.+.-|++.-+..+++.. .......|-.|+...--
T Consensus 59 il~~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRF- 133 (674)
T KOG0922|consen 59 ILYAVEDNQVLIVIGETGSGKSTQ----IPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRF- 133 (674)
T ss_pred HHHHHHHCCEEEEEcCCCCCcccc----HhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEe-
Confidence 344444578899999999999987 333333222 22234777779988777666544 33333334333222110
Q ss_pred chHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHH
Q 011620 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219 (481)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~ 219 (481)
++. ......|.++|.+.|++.+..++ .++.+++||+||||.- .-..+
T Consensus 134 ---ed~-----------------------ts~~TrikymTDG~LLRE~l~Dp--~LskYsvIIlDEAHER--sl~TD--- 180 (674)
T KOG0922|consen 134 ---EDS-----------------------TSKDTRIKYMTDGMLLREILKDP--LLSKYSVIILDEAHER--SLHTD--- 180 (674)
T ss_pred ---ccc-----------------------CCCceeEEEecchHHHHHHhcCC--ccccccEEEEechhhh--hhHHH---
Confidence 000 01224899999999999888755 3778999999999952 00111
Q ss_pred HHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCc
Q 011620 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (481)
Q Consensus 220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~ 299 (481)
.+++++...-.. .+..++|++|||+. ...+...+..-++....+..
T Consensus 181 iLlGlLKki~~~--------------------------------R~~LklIimSATld--a~kfS~yF~~a~i~~i~GR~ 226 (674)
T KOG0922|consen 181 ILLGLLKKILKK--------------------------------RPDLKLIIMSATLD--AEKFSEYFNNAPILTIPGRT 226 (674)
T ss_pred HHHHHHHHHHhc--------------------------------CCCceEEEEeeeec--HHHHHHHhcCCceEeecCCC
Confidence 122222211110 13348999999994 33333333333444333332
Q ss_pred cccCCcccccceec-ccCCCcHHHHH---HHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCC---c--ceEEEEccCccC
Q 011620 300 RYKLPERLESYKLI-CESKLKPLYLV---ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE---L--RIKIKEYSGLQR 370 (481)
Q Consensus 300 ~~~~~~~~~~~~~~-~~~~~k~~~l~---~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~---~--~~~~~~~~~~~~ 370 (481)
- .+ +.++.. ...+.-...+. .+-...+++-+|||.+..++++.+++.|.+... . ...+..+||.++
T Consensus 227 f-PV----ei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~ 301 (674)
T KOG0922|consen 227 F-PV----EILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALP 301 (674)
T ss_pred C-ce----eEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCC
Confidence 1 11 111111 11111111122 222233567899999999999999999987521 1 113567899999
Q ss_pred hHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecC------------------CCChhhHHHHHhhhhcCCCC
Q 011620 371 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQL 432 (481)
Q Consensus 371 ~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~------------------p~s~~~~~Q~~GR~~R~~~~ 432 (481)
..++..+.+.-..|..+|+++|++++..+.|+++..||.-+. |-|.+.-.||.||+||.+ +
T Consensus 302 ~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-p 380 (674)
T KOG0922|consen 302 SEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-P 380 (674)
T ss_pred HHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-C
Confidence 999888887777789999999999999999999999997542 457788899999999984 8
Q ss_pred CcEEEEEeCCcchh
Q 011620 433 GRCFTLLHKDEVCL 446 (481)
Q Consensus 433 g~~i~~~~~~~~~~ 446 (481)
|.|+-+++.++...
T Consensus 381 GkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 381 GKCYRLYTESAYDK 394 (674)
T ss_pred ceEEEeeeHHHHhh
Confidence 99999998876543
No 119
>COG4889 Predicted helicase [General function prediction only]
Probab=99.86 E-value=2.5e-21 Score=187.76 Aligned_cols=386 Identities=17% Similarity=0.202 Sum_probs=204.5
Q ss_pred HHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHH
Q 011620 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (481)
Q Consensus 41 ~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~ 120 (481)
..+.-.+-..|||+|+.|++.+.+.+..+.+.-+.+++|+|||++.+. +.+.+.. .++|+++|+..|..|..++
T Consensus 152 ~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~-----~~iL~LvPSIsLLsQTlre 225 (1518)
T COG4889 152 DNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA-----ARILFLVPSISLLSQTLRE 225 (1518)
T ss_pred cccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh-----hheEeecchHHHHHHHHHH
Confidence 333333456999999999999999998888888999999999999776 5555544 3799999999999998887
Q ss_pred HHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHH---h--hccCCcEEEeCChhHHHhhhcCCCccc
Q 011620 121 FAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQ---E--LQSAVDILVATPGRLMDHINATRGFTL 195 (481)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~I~v~T~~~l~~~l~~~~~~~~ 195 (481)
+..-.. ..+....+.++....+... -.+-.....+..-+...+.. . ...+--|+++|++++...-.. ...-+
T Consensus 226 w~~~~~-l~~~a~aVcSD~kvsrs~e-Dik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G~ 302 (1518)
T COG4889 226 WTAQKE-LDFRASAVCSDDKVSRSAE-DIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAGL 302 (1518)
T ss_pred HhhccC-ccceeEEEecCcccccccc-ccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcCC
Confidence 765432 3455555554433222100 00001111111222222221 1 223456999999999776543 22446
Q ss_pred CCccEEEEecchhhhhHhHH-------------hHHHHHHHhcccCcccccccc--------ccccccccccch---hhh
Q 011620 196 EHLCYLVVDETDRLLREAYQ-------------AWLPTVLQLTRSDNENRFSDA--------STFLPSAFGSLK---TIR 251 (481)
Q Consensus 196 ~~~~~iViDE~H~~~~~~~~-------------~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~~~~---~~~ 251 (481)
..+++||.||||+....... ..+...-++....++..+++. ...+.++-+... .+-
T Consensus 303 ~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~ 382 (1518)
T COG4889 303 DEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFH 382 (1518)
T ss_pred CCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhh
Confidence 78999999999974321110 111111111111111111000 000000000000 000
Q ss_pred hccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHH---H---H
Q 011620 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYL---V---A 325 (481)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l---~---~ 325 (481)
+.+...+........++++.+... ...+...+.............+.. . .
T Consensus 383 rl~FgeAv~rdlLTDYKVmvlaVd------------------------~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wn 438 (1518)
T COG4889 383 RLGFGEAVERDLLTDYKVMVLAVD------------------------KEVIAGVLQSVLSGPSKGLALDDVSKIVGCWN 438 (1518)
T ss_pred cccHHHHHHhhhhccceEEEEEec------------------------hhhhhhhhhhhccCcccccchhhhhhhhhhhh
Confidence 000000000001111111111110 000000000000000000011111 0 0
Q ss_pred -HHHhc--------------CCCcEEEEcCCchhHHHHHHHHhh------------cCCcceEEEEccCccChHHHHHHH
Q 011620 326 -LLQSL--------------GEEKCIVFTSSVESTHRLCTLLNH------------FGELRIKIKEYSGLQRQSVRSKTL 378 (481)
Q Consensus 326 -~l~~~--------------~~~~~lVf~~s~~~~~~l~~~l~~------------~~~~~~~~~~~~~~~~~~~r~~~~ 378 (481)
+.+.. +-.+.+-||.+.++...+++.+.+ .....+.+..+.|.|+..+|...+
T Consensus 439 Glakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~ 518 (1518)
T COG4889 439 GLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLL 518 (1518)
T ss_pred hhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHH
Confidence 00000 012567888888777777665443 112335677888999999985544
Q ss_pred HH---HhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCC-CCCcEEEEEe--------------
Q 011620 379 KA---FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG-QLGRCFTLLH-------------- 440 (481)
Q Consensus 379 ~~---f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~-~~g~~i~~~~-------------- 440 (481)
.. |...+|+||-....+++|+|+|.++.||++++-.|+.+.+|.+||+.|.. ++.+.+++..
T Consensus 519 ~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~ 598 (1518)
T COG4889 519 ELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELV 598 (1518)
T ss_pred hccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHh
Confidence 32 33567999999999999999999999999999999999999999999942 2333443332
Q ss_pred -CCcchhhhhhcccccchhh
Q 011620 441 -KDEVCLVGCLTPLLLCTSD 459 (481)
Q Consensus 441 -~~~~~~~~~i~~~~~~~~~ 459 (481)
..+.+.++++.+.++.+.+
T Consensus 599 ~n~nFk~VWqVlnALRShD~ 618 (1518)
T COG4889 599 NNTNFKNVWQVLKALRSHDE 618 (1518)
T ss_pred cCccHHHHHHHHHHHHhcCH
Confidence 3444555555555544443
No 120
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.86 E-value=2e-19 Score=183.60 Aligned_cols=90 Identities=23% Similarity=0.174 Sum_probs=68.9
Q ss_pred CCCCCchhhHHHHHhhhCCCCC-----CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHH-HH
Q 011620 47 GISSLFPVQVAVWQETIGPGLF-----ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK-DV 120 (481)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~-----~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~-~~ 120 (481)
|| ++|+-|.+....+.+++.. ++.++|+||||+|||++|++|++.+.... +.+++|-|.|+.|.+|+. ++
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~---~k~vVIST~T~~LQeQL~~kD 98 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE---KKKLVISTATVALQEQLVSKD 98 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc---CCeEEEEcCCHHHHHHHHhhh
Confidence 55 8999999998888887766 36788999999999999999998765533 336999999999999975 55
Q ss_pred HHHhcccc--CceEEEeecCCc
Q 011620 121 FAAIAPAV--GLSVGLAVGQSS 140 (481)
Q Consensus 121 ~~~~~~~~--~~~v~~~~~~~~ 140 (481)
+..+...+ .+++.++.|...
T Consensus 99 lP~l~~~l~~~~~~~llKGr~n 120 (697)
T PRK11747 99 LPLLLKISGLDFKFTLAKGRGR 120 (697)
T ss_pred hhHHHHHcCCCceEEEEcCccc
Confidence 54443333 456666665544
No 121
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.7e-20 Score=188.55 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=110.3
Q ss_pred cccCCCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEE
Q 011620 313 ICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390 (481)
Q Consensus 313 ~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi 390 (481)
..+...|...+...+... .+.++||||+|++.++.+..+|...+ +.+..+|+ ...+|++.+-.|..+...|+|
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~g---I~h~vLna--kq~~REa~Iia~AG~~g~VtI 651 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR---IAHNVLNA--KQHDREAEIVAEAGQKGAVTI 651 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcC---CCceeecC--CHHHhHHHHHHhcCCCCeEEE
Confidence 344556777777777544 67799999999999999999999887 78888986 577899999999999999999
Q ss_pred ecccccccCCCC---CCC-----EEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcch
Q 011620 391 SSDAMTRGMDVE---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVC 445 (481)
Q Consensus 391 ~t~~l~~Gidi~---~~~-----~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~ 445 (481)
||+++++|+||+ ++. +||.+..|.|...|.|+.||+||.|.+|.++.|++..|.-
T Consensus 652 ATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 652 ATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred eccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 999999999998 443 4588889999999999999999999999999999987643
No 122
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=1.1e-19 Score=175.38 Aligned_cols=370 Identities=18% Similarity=0.143 Sum_probs=222.1
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (481)
..+.+||++.++.+++-...+...|+-..+|.|||...+..+.....++.-.+ .+|||||. .+..||.++|.++.+.
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~-paLIVCP~-Tii~qW~~E~~~w~p~- 280 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTK-PALIVCPA-TIIHQWMKEFQTWWPP- 280 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccC-ceEEEccH-HHHHHHHHHHHHhCcc-
Confidence 46899999999998877767788999999999999875443333333322333 59999998 5678999999999874
Q ss_pred CceEEEeecCCchHH--HHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecc
Q 011620 129 GLSVGLAVGQSSIAD--EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (481)
Q Consensus 129 ~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~ 206 (481)
..|..+++...... .....-+ ....+.+.......|+|+|++.+.-.-. .+.--.++++|+||.
T Consensus 281 -~rv~ilh~t~s~~r~~~~~~~~~----------~~~~L~r~~~~~~~ilitty~~~r~~~d---~l~~~~W~y~ILDEG 346 (923)
T KOG0387|consen 281 -FRVFILHGTGSGARYDASHSSHK----------KDKLLIRKVATDGGILITTYDGFRIQGD---DLLGILWDYVILDEG 346 (923)
T ss_pred -eEEEEEecCCcccccccchhhhh----------hhhhheeeecccCcEEEEehhhhcccCc---ccccccccEEEecCc
Confidence 57777777665211 0000000 0000001112345799999988854422 122335789999999
Q ss_pred hhhhhHhH----------------------HhHHHHHHHhcccCccccccccccccccccccc-----------------
Q 011620 207 DRLLREAY----------------------QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL----------------- 247 (481)
Q Consensus 207 H~~~~~~~----------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 247 (481)
|.+-++.. ...+..+..++.-..++.......+...+...+
T Consensus 347 H~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~ay 426 (923)
T KOG0387|consen 347 HRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAY 426 (923)
T ss_pred ccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHH
Confidence 98755432 122222222221111111111110000000000
Q ss_pred -------hh-----hhhccccccCCCCCCcceeeEEEeEEEecCcc------------------------cccccccCCc
Q 011620 248 -------KT-----IRRCGVERGFKDKPYPRLVKMVLSATLTQDPN------------------------KLAQLDLHHP 291 (481)
Q Consensus 248 -------~~-----~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~------------------------~~~~~~~~~~ 291 (481)
.. +++...+..-...+-+.-++++++-|...... ......+..|
T Consensus 427 kca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHP 506 (923)
T KOG0387|consen 427 KCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHP 506 (923)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCc
Confidence 00 00000011111233344556666666431100 0011112222
Q ss_pred eeeecCCccccCCcccccceecccCCCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCcc
Q 011620 292 LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 369 (481)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 369 (481)
......... .. .-..+........|...+..++... .+.++|+|..++.+...+...|.... ++....+.|..
T Consensus 507 dll~~~~~~--~~-~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~--~ysylRmDGtT 581 (923)
T KOG0387|consen 507 DLLDRRDED--EK-QGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAK--GYSYLRMDGTT 581 (923)
T ss_pred ccccCcccc--cc-cCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcC--CceEEEecCCC
Confidence 222111100 00 0001112233455666676666533 45699999999999999999998422 28999999999
Q ss_pred ChHHHHHHHHHHhcCC-ceE-EEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEe
Q 011620 370 RQSVRSKTLKAFREGK-IQV-LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440 (481)
Q Consensus 370 ~~~~r~~~~~~f~~g~-~~v-Li~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~ 440 (481)
+...|..++++|.+++ ..| |++|.+.+-|+|+.+++.||+||+.|++.+=.|..-|+.|.|+...+++|-.
T Consensus 582 ~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL 654 (923)
T KOG0387|consen 582 PAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRL 654 (923)
T ss_pred ccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEE
Confidence 9999999999999875 444 7889999999999999999999999999999999999999999887777643
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=7e-19 Score=172.16 Aligned_cols=356 Identities=18% Similarity=0.186 Sum_probs=211.8
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.|+ .|++.|.-..-.++. | -+.++.||+|||+++.+++.-.... |..+.+++|+..|+.|-++++..+.
T Consensus 75 lg~-r~ydvQlig~l~Ll~----G--~VaEM~TGEGKTLvA~l~a~l~AL~----G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLA----G--DVIEMATGEGKTLAGAIAAAGYALQ----GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cCC-CcchHHHHHHHHHhC----C--CcccccCCCCHHHHHHHHHHHHHHc----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 464 788888777655443 3 4889999999999999988766544 3469999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-----HHhhh-cCCCcccCCcc
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-----MDHIN-ATRGFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-----~~~l~-~~~~~~~~~~~ 199 (481)
..+|+.++++.++......... ..++|+.+|..-| .+.+. .........+.
T Consensus 144 ~~LGLsvg~i~~~~~~~err~a-----------------------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~ 200 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAA-----------------------YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPD 200 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHH-----------------------HcCCCEEcCCcccccccchhhhccChHhhcCCccc
Confidence 9999999999887664433221 3469999998654 22221 11122345688
Q ss_pred EEEEecchhhhhH---------------hHHhHHHHHHHhcccCc-------c-c-cccccc-----ccc--cccccc--
Q 011620 200 YLVVDETDRLLRE---------------AYQAWLPTVLQLTRSDN-------E-N-RFSDAS-----TFL--PSAFGS-- 246 (481)
Q Consensus 200 ~iViDE~H~~~~~---------------~~~~~~~~i~~~~~~~~-------~-~-~~~~~~-----~~~--~~~~~~-- 246 (481)
+.||||+|.++-+ .....+..+...+.... . . .+.+.+ ..+ ...+..
T Consensus 201 faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~ 280 (764)
T PRK12326 201 VAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEH 280 (764)
T ss_pred eeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcch
Confidence 9999999964221 11112222222221110 0 0 000000 000 000000
Q ss_pred -----------ch---hhhhc----------cc-----cccCCCCC-------------------------------C--
Q 011620 247 -----------LK---TIRRC----------GV-----ERGFKDKP-------------------------------Y-- 264 (481)
Q Consensus 247 -----------~~---~~~~~----------~~-----~~~~~~~~-------------------------------~-- 264 (481)
+. ..... .+ .+-+.... +
T Consensus 281 ~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr 360 (764)
T PRK12326 281 VGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIG 360 (764)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHH
Confidence 00 00000 00 00000000 0
Q ss_pred cceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHh--cCCCcEEEEcCCc
Q 011620 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV 342 (481)
Q Consensus 265 ~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~ 342 (481)
....+.+||+|.......+...+- -.++..+... +........ .+......|...+.+.+.. ..+.|+||.+.|+
T Consensus 361 ~Y~kLsGMTGTa~t~~~Ef~~iY~-l~Vv~IPtnk-p~~R~d~~d-~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI 437 (764)
T PRK12326 361 RYPTVCGMTGTAVAAGEQLRQFYD-LGVSVIPPNK-PNIREDEAD-RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDV 437 (764)
T ss_pred hcchheeecCCChhHHHHHHHHhC-CcEEECCCCC-CceeecCCC-ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCH
Confidence 001245777776544444333222 2233222222 222111111 2223334455555544432 2577999999999
Q ss_pred hhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCC-ceEEEecccccccCCCCC---------------CCE
Q 011620 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEG---------------VNN 406 (481)
Q Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vLi~t~~l~~Gidi~~---------------~~~ 406 (481)
+..+.+...|.+.+ ++...+++.-...+- +++. .+|+ -.|.|+|+++++|.||.- ==+
T Consensus 438 ~~SE~ls~~L~~~g---I~h~vLNAk~~~~EA-~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLh 511 (764)
T PRK12326 438 AESEELAERLRAAG---VPAVVLNAKNDAEEA-RIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLH 511 (764)
T ss_pred HHHHHHHHHHHhCC---CcceeeccCchHhHH-HHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcE
Confidence 99999999999887 777777776443332 2222 2343 468999999999999851 127
Q ss_pred EEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 407 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 407 vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
||....+.|...-.|..||+||.|.+|.+-.|++-.|.
T Consensus 512 VIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 512 VIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred EEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 88888999999999999999999999999999987663
No 124
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.82 E-value=1.2e-18 Score=172.25 Aligned_cols=368 Identities=20% Similarity=0.101 Sum_probs=206.0
Q ss_pred CCchhhHHHHHhhhCCCCC------CCCEEEECCCCchHHHHhHHHHHHHHHhhccCC---ccEEEEcccHHHHHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLF------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC---LRALVVLPTRDLALQVKDV 120 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~------~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~---~~~lil~P~~~L~~q~~~~ 120 (481)
.+||+|++.+.-+++.+.. ....|+...+|+|||+..+..+...+...+..+ .++||++|. .|+..|+++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 7999999999988876532 245888999999999997766666665543200 479999998 677889999
Q ss_pred HHHhccccCceEEEeecCCch--HHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCc
Q 011620 121 FAAIAPAVGLSVGLAVGQSSI--ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL 198 (481)
Q Consensus 121 ~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~ 198 (481)
|.++.....++...+++.... ....+-+.- ....-..-|++.+++.+...+.. +....+
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~----------------~~~~~~~~vli~sye~~~~~~~~---il~~~~ 377 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFL----------------GYKQFTTPVLIISYETASDYCRK---ILLIRP 377 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHh----------------hhhheeEEEEeccHHHHHHHHHH---HhcCCC
Confidence 999987667778777777653 111110000 00011135888999999876665 446678
Q ss_pred cEEEEecchhhhhHhH----------------------HhHHHHHHHhcccCccccccccccccccccccchhhhh----
Q 011620 199 CYLVVDETDRLLREAY----------------------QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR---- 252 (481)
Q Consensus 199 ~~iViDE~H~~~~~~~----------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 252 (481)
+++|+||.|.+-+... ++.+...+..+.-.++....................+.
T Consensus 378 glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 378 GLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred CeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 9999999998644321 22222223322222222222111111111111000000
Q ss_pred --------------------ccccc-cCCCCCCcce--eeEEEeEEEecC--cccc-------------------ccccc
Q 011620 253 --------------------CGVER-GFKDKPYPRL--VKMVLSATLTQD--PNKL-------------------AQLDL 288 (481)
Q Consensus 253 --------------------~~~~~-~~~~~~~~~~--~~i~~Sat~~~~--~~~~-------------------~~~~~ 288 (481)
.-... +......|.. .++++-.|.-.. ...+ ....+
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~c 537 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLC 537 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHh
Confidence 00000 1222222222 233332222100 0000 00111
Q ss_pred CCceeeecCC-----ccccCCcc------cccceecccCCCcHHHHHHHHHhcC---CCcEEEEcCCchhHHHHHHHHhh
Q 011620 289 HHPLFLTTGE-----TRYKLPER------LESYKLICESKLKPLYLVALLQSLG---EEKCIVFTSSVESTHRLCTLLNH 354 (481)
Q Consensus 289 ~~~~~~~~~~-----~~~~~~~~------~~~~~~~~~~~~k~~~l~~~l~~~~---~~~~lVf~~s~~~~~~l~~~l~~ 354 (481)
..|..+.... .....+.. ............+...|..++.... ..++++..|-....+.+......
T Consensus 538 nhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~ 617 (776)
T KOG0390|consen 538 NHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW 617 (776)
T ss_pred cCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh
Confidence 1121111000 00000000 0001111112233334444442221 22333333433344444444444
Q ss_pred cCCcceEEEEccCccChHHHHHHHHHHhcCC--ceE-EEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCC
Q 011620 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQV-LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~v-Li~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~ 431 (481)
.| +.+..++|.++..+|+.+++.|.+.. ..| |.++.+.++||++-+.+.||++|.+|+++.=.|.++|+.|.|+
T Consensus 618 ~g---~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQ 694 (776)
T KOG0390|consen 618 RG---YEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQ 694 (776)
T ss_pred cC---ceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCC
Confidence 44 89999999999999999999999643 244 6677899999999999999999999999999999999999999
Q ss_pred CCcEEEEEe
Q 011620 432 LGRCFTLLH 440 (481)
Q Consensus 432 ~g~~i~~~~ 440 (481)
+..|++|-.
T Consensus 695 Kk~v~iYrL 703 (776)
T KOG0390|consen 695 KKPVYIYRL 703 (776)
T ss_pred cceEEEEEe
Confidence 998888754
No 125
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.82 E-value=2e-18 Score=175.02 Aligned_cols=120 Identities=23% Similarity=0.296 Sum_probs=106.8
Q ss_pred CcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccc
Q 011620 318 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (481)
Q Consensus 318 ~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l 395 (481)
.+...+...+... .+.+++|||++...++.+++.|.+.+ +.+..+|++++..+|..+++.|+.|+..|+|||+.+
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~g---i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L 506 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLL 506 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcc---eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHH
Confidence 3445555555533 46789999999999999999999876 899999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEecC-----CCChhhHHHHHhhhhcCCCCCcEEEEEeC
Q 011620 396 TRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHK 441 (481)
Q Consensus 396 ~~Gidi~~~~~vI~~~~-----p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~ 441 (481)
++|+|+|++++||+++. |.+...|+||+||+||. ..|.++.|++.
T Consensus 507 ~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~ 556 (652)
T PRK05298 507 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (652)
T ss_pred hCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecC
Confidence 99999999999999874 78899999999999996 68999999984
No 126
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.82 E-value=1.9e-18 Score=173.98 Aligned_cols=323 Identities=19% Similarity=0.227 Sum_probs=210.4
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH-hcccc
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAV 128 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~ 128 (481)
..+..+...++.+- .++.+++.|.||+|||...-..+++.....+ +..++++.-|++--|.-++++... .+...
T Consensus 173 Pa~~~r~~Il~~i~----~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 173 PAYKMRDTILDAIE----ENQVVVISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred ccHHHHHHHHHHHH----hCceEEEeCCCCCCchhhhhHHHHHHHHhcC-CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 34555655555544 4888999999999999998888888776665 555677777998888877776543 34444
Q ss_pred CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh
Q 011620 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~ 208 (481)
|-.|+.-....... .....+++||.+.|++.+... -.+.++..||+||+|.
T Consensus 248 g~~VGYqvrl~~~~---------------------------s~~t~L~fcTtGvLLr~L~~~--~~l~~vthiivDEVHE 298 (924)
T KOG0920|consen 248 GEEVGYQVRLESKR---------------------------SRETRLLFCTTGVLLRRLQSD--PTLSGVTHIIVDEVHE 298 (924)
T ss_pred CCeeeEEEeeeccc---------------------------CCceeEEEecHHHHHHHhccC--cccccCceeeeeeEEE
Confidence 54444333322111 122489999999999999873 3477899999999995
Q ss_pred hhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccccccccc
Q 011620 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 288 (481)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~ 288 (481)
-.- ..+.+-.++..+...+ +..++|+||||+..+. +..-+.
T Consensus 299 R~i--~~DflLi~lk~lL~~~-----------------------------------p~LkvILMSAT~dae~--fs~YF~ 339 (924)
T KOG0920|consen 299 RSI--NTDFLLILLKDLLPRN-----------------------------------PDLKVILMSATLDAEL--FSDYFG 339 (924)
T ss_pred ccC--CcccHHHHHHHHhhhC-----------------------------------CCceEEEeeeecchHH--HHHHhC
Confidence 211 1112222222221111 4568999999986322 222122
Q ss_pred CCceeeecCCcccc--------------CCcccccc------------eecccCCCcHHHHHHHHHhc----CCCcEEEE
Q 011620 289 HHPLFLTTGETRYK--------------LPERLESY------------KLICESKLKPLYLVALLQSL----GEEKCIVF 338 (481)
Q Consensus 289 ~~~~~~~~~~~~~~--------------~~~~~~~~------------~~~~~~~~k~~~l~~~l~~~----~~~~~lVf 338 (481)
..+++...+..-+. .......+ ......+.....+..+++.. ..+.+|||
T Consensus 340 ~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVF 419 (924)
T KOG0920|consen 340 GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVF 419 (924)
T ss_pred CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEE
Confidence 33333322211100 00000000 00001112333444444322 46789999
Q ss_pred cCCchhHHHHHHHHhhcCC----cceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCC-
Q 011620 339 TSSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP- 413 (481)
Q Consensus 339 ~~s~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p- 413 (481)
.+....+..+.+.|..... ..+-+..+|+.++..++..+.+.--.|..+||++|++++.+|.|+++-.||..+..
T Consensus 420 LPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~K 499 (924)
T KOG0920|consen 420 LPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVK 499 (924)
T ss_pred cCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeee
Confidence 9999999999999975321 23678899999999999999888888999999999999999999999999975521
Q ss_pred -----------------CChhhHHHHHhhhhcCCCCCcEEEEEeCCcchh
Q 011620 414 -----------------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCL 446 (481)
Q Consensus 414 -----------------~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~ 446 (481)
-|.++-.||.||+||. ..|.|+.+++....+.
T Consensus 500 e~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 500 EKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEK 548 (924)
T ss_pred eeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhh
Confidence 2455678999999998 6899999998755443
No 127
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.82 E-value=1e-18 Score=180.27 Aligned_cols=78 Identities=23% Similarity=0.220 Sum_probs=66.5
Q ss_pred HHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 011620 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 44 ~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
..+...++|+.|.+++..+...+..+..++++||||+|||++|+.|++.+..... .+++|.++|+.+.+|..++...
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~---~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG---KKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC---CcEEEECCCHHHHHHHHHhhcc
Confidence 4456669999999999998877777788999999999999999999998876543 4699999999999998887655
Q ss_pred h
Q 011620 124 I 124 (481)
Q Consensus 124 ~ 124 (481)
.
T Consensus 86 ~ 86 (654)
T COG1199 86 I 86 (654)
T ss_pred h
Confidence 3
No 128
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=3.6e-18 Score=176.09 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=69.7
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
|.|..+||.|.+.+..+.+.+..++.+++++|||+|||++.+.+++.+....+ ...+++|++.|..-..|..+++++..
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-EVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-ccccEEEEcccchHHHHHHHHHHhhh
Confidence 57877899999999999999999999999999999999999999998876432 23589999999999999999998853
No 129
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.7e-18 Score=163.78 Aligned_cols=310 Identities=20% Similarity=0.252 Sum_probs=195.3
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc--cCCccEEEEcccHHHHHHHHH-HHHHhcc
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKD-VFAAIAP 126 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~--~~~~~~lil~P~~~L~~q~~~-~~~~~~~ 126 (481)
..+++-.+.+.++- .++.++|.|.||||||.. +-+++...+ ..|.++-..-|++.-+-.++. ..+.+..
T Consensus 265 PVy~ykdell~av~----e~QVLiI~GeTGSGKTTQ----iPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgv 336 (902)
T KOG0923|consen 265 PVYPYKDELLKAVK----EHQVLIIVGETGSGKTTQ----IPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGV 336 (902)
T ss_pred CchhhHHHHHHHHH----hCcEEEEEcCCCCCcccc----ccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCc
Confidence 44444444444443 488999999999999987 333343332 223236666699887776553 3444533
Q ss_pred ccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecc
Q 011620 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (481)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~ 206 (481)
.+|-. +|..-..+.. ..+..-|=++|.++|++-+... .++..+++||||||
T Consensus 337 kLG~e----VGYsIRFEdc-----------------------TSekTvlKYMTDGmLlREfL~e--pdLasYSViiiDEA 387 (902)
T KOG0923|consen 337 KLGHE----VGYSIRFEDC-----------------------TSEKTVLKYMTDGMLLREFLSE--PDLASYSVIIVDEA 387 (902)
T ss_pred ccccc----cceEEEeccc-----------------------cCcceeeeeecchhHHHHHhcc--ccccceeEEEeehh
Confidence 33322 2221111110 0122356799999999877763 56889999999999
Q ss_pred hhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccccccc
Q 011620 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 286 (481)
Q Consensus 207 H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~ 286 (481)
|.- .-....++++....-+ ..+..++++.|||+. ...+...
T Consensus 388 HER-----TL~TDILfgLvKDIar--------------------------------~RpdLKllIsSAT~D--AekFS~f 428 (902)
T KOG0923|consen 388 HER-----TLHTDILFGLVKDIAR--------------------------------FRPDLKLLISSATMD--AEKFSAF 428 (902)
T ss_pred hhh-----hhhhhHHHHHHHHHHh--------------------------------hCCcceEEeeccccC--HHHHHHh
Confidence 952 0011112222211100 114558899999983 3444444
Q ss_pred ccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHH----Hh---cCCCcEEEEcCCchhHHHHHHHHhhc----
Q 011620 287 DLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL----QS---LGEEKCIVFTSSVESTHRLCTLLNHF---- 355 (481)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l----~~---~~~~~~lVf~~s~~~~~~l~~~l~~~---- 355 (481)
+-.-|++...+..-+ +..++...+ -.+++...+ +. .+.+-+|||....++.+.....|++.
T Consensus 429 FDdapIF~iPGRRyP-----Vdi~Yt~~P---EAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~L 500 (902)
T KOG0923|consen 429 FDDAPIFRIPGRRYP-----VDIFYTKAP---EADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRL 500 (902)
T ss_pred ccCCcEEeccCcccc-----eeeecccCC---chhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHh
Confidence 444455544444321 112222222 222333222 21 14578999999999988888877664
Q ss_pred C--CcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecC------------------CCC
Q 011620 356 G--ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAY 415 (481)
Q Consensus 356 ~--~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~------------------p~s 415 (481)
| ...+-+..+++.++...+..+.+---.|-.+|++||+++++.+.|+++..||.-++ |.|
T Consensus 501 Gski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piS 580 (902)
T KOG0923|consen 501 GSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPIS 580 (902)
T ss_pred ccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeec
Confidence 2 23456778999999988887777666788999999999999999999999997553 456
Q ss_pred hhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 416 ~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
.+.-.||.||+||.| +|.|+-+++....
T Consensus 581 KAsA~QRaGRAGRtg-PGKCfRLYt~~aY 608 (902)
T KOG0923|consen 581 KASANQRAGRAGRTG-PGKCFRLYTAWAY 608 (902)
T ss_pred hhhhhhhccccCCCC-CCceEEeechhhh
Confidence 778899999999986 8999999986543
No 130
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.80 E-value=1.9e-18 Score=170.01 Aligned_cols=148 Identities=19% Similarity=0.154 Sum_probs=97.1
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
.|-.||++.+..+- .+++++|.|||.+|||++-...+-..+.. .+.+ -+++++|+++|+.|.............
T Consensus 511 ~Pd~WQ~elLDsvD----r~eSavIVAPTSaGKTfisfY~iEKVLRe-sD~~-VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVD----RNESAVIVAPTSAGKTFISFYAIEKVLRE-SDSD-VVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhh----cccceEEEeeccCCceeccHHHHHHHHhh-cCCC-EEEEecchHHHhhhhhHHHHHhhccCc
Confidence 57789999876543 37899999999999999976655554444 3444 499999999999998766544321111
Q ss_pred ceEEEeecCCchHHHH-HHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcC--CCcccCCccEEEEecc
Q 011620 130 LSVGLAVGQSSIADEI-SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT--RGFTLEHLCYLVVDET 206 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~--~~~~~~~~~~iViDE~ 206 (481)
. ..+....... +.. +.-..++.|+||-|+.+...+..- ..-....+++||+||+
T Consensus 585 ~-----~rg~sl~g~ltqEY------------------sinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEV 641 (1330)
T KOG0949|consen 585 F-----LRGVSLLGDLTQEY------------------SINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEV 641 (1330)
T ss_pred c-----ccchhhHhhhhHHh------------------cCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechh
Confidence 1 1111111111 110 111246899999999998888762 1123567899999999
Q ss_pred hhhhhHhHHhHHHHHHHhcc
Q 011620 207 DRLLREAYQAWLPTVLQLTR 226 (481)
Q Consensus 207 H~~~~~~~~~~~~~i~~~~~ 226 (481)
|.+....-+-..++++.+.+
T Consensus 642 H~iG~~ed~l~~Eqll~li~ 661 (1330)
T KOG0949|consen 642 HLIGNEEDGLLWEQLLLLIP 661 (1330)
T ss_pred hhccccccchHHHHHHHhcC
Confidence 99876655555555555443
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=2.7e-18 Score=172.29 Aligned_cols=356 Identities=18% Similarity=0.204 Sum_probs=207.9
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.|. .|++.|. +..+.-.+.-+.++.||+|||+++.+|+.-.... |..|.+++|+..|+.|-++++..+.
T Consensus 79 lGm-~~ydVQl------iGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~----G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 79 MGM-RHFDVQL------IGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS----GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred hCC-CcchhHH------HhhhHhccCccccccCCCCChHHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 353 6777774 3222235677999999999999999988755544 3469999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-----HHhhhc-CCCcccCCcc
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-----MDHINA-TRGFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-----~~~l~~-~~~~~~~~~~ 199 (481)
..+|++|.++.++....+.... ..++|+++|..-| .+.+.. ........+.
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~-----------------------Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~ 204 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAA-----------------------YAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELN 204 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHH-----------------------hcCCEEEEcccccccchhhccceechhhhcccccc
Confidence 9999999999887665443221 2369999998775 222211 1112246789
Q ss_pred EEEEecchhhhhH----------------hHHhHHHHHHHhcccC---------ccccc-----------cccc-----c
Q 011620 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSD---------NENRF-----------SDAS-----T 238 (481)
Q Consensus 200 ~iViDE~H~~~~~----------------~~~~~~~~i~~~~~~~---------~~~~~-----------~~~~-----~ 238 (481)
++||||+|.++-+ .....+..+...+... ....+ .+.+ .
T Consensus 205 ~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~ 284 (913)
T PRK13103 205 FAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEE 284 (913)
T ss_pred eeEechhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHH
Confidence 9999999964221 1111122222211100 00000 0000 0
Q ss_pred -----cc----ccccc-----cc-------h---hhhhc----------cc-----cccCCCCCC---------------
Q 011620 239 -----FL----PSAFG-----SL-------K---TIRRC----------GV-----ERGFKDKPY--------------- 264 (481)
Q Consensus 239 -----~~----~~~~~-----~~-------~---~~~~~----------~~-----~~~~~~~~~--------------- 264 (481)
.+ ...+. .. . ..... .+ .+-+....|
T Consensus 285 ~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~ 364 (913)
T PRK13103 285 MLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLN 364 (913)
T ss_pred HhhhCCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCC
Confidence 00 00000 00 0 00000 00 000000000
Q ss_pred ------------------cceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHH
Q 011620 265 ------------------PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326 (481)
Q Consensus 265 ------------------~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 326 (481)
...++.+||+|.......+.. .++..++......+......... +..+...|...+.+.
T Consensus 365 I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~--iY~l~Vv~IPTnkP~~R~D~~d~-vy~t~~eK~~Ai~~e 441 (913)
T PRK13103 365 IQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQ--IYGLDVVVIPPNKPLARKDFNDL-VYLTAEEKYAAIITD 441 (913)
T ss_pred cCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHH--HhCCCEEECCCCCCcccccCCCe-EEcCHHHHHHHHHHH
Confidence 001234556665433333222 22222222222222222222222 233444566655555
Q ss_pred HHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCC-ceEEEecccccccCCCC-
Q 011620 327 LQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVE- 402 (481)
Q Consensus 327 l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vLi~t~~l~~Gidi~- 402 (481)
+... .+.|+||-+.|++..+.+..+|.+.+ ++...++......+-..+- .+|+ -.|.|+|+++++|.||.
T Consensus 442 i~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~g---i~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkL 515 (913)
T PRK13103 442 IKECMALGRPVLVGTATIETSEHMSNLLKKEG---IEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILL 515 (913)
T ss_pred HHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcC---CcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEec
Confidence 5432 57799999999999999999999876 5655566554433322222 3453 46899999999999984
Q ss_pred ------------------------------------CCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 403 ------------------------------------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 403 ------------------------------------~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
+==+||....+.|..-=.|..||+||.|.+|.+-.|++-.|.
T Consensus 516 g~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 516 GGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred CCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 112788888999999999999999999999999999997663
No 132
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.80 E-value=4.5e-18 Score=164.21 Aligned_cols=364 Identities=20% Similarity=0.193 Sum_probs=217.9
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
++.+||.--++.+.=.+..+=+.|+...+|.|||...+. .+..+...+.+|| =|||||+..|- .|.+++.+||+ .
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIa-FlayLkq~g~~gp-HLVVvPsSTle-NWlrEf~kwCP--s 473 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIA-FLAYLKQIGNPGP-HLVVVPSSTLE-NWLREFAKWCP--S 473 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHH-HHHHHHHcCCCCC-cEEEecchhHH-HHHHHHHHhCC--c
Confidence 588899887776543334455679999999999987543 4555555555665 78899998875 49999999998 5
Q ss_pred ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhh
Q 011620 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~ 209 (481)
+.|..++|...-...++....... ...+|++|||+.....-.....+.-..++++|+||.|.+
T Consensus 474 l~Ve~YyGSq~ER~~lR~~i~~~~-----------------~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmL 536 (941)
T KOG0389|consen 474 LKVEPYYGSQDERRELRERIKKNK-----------------DDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHML 536 (941)
T ss_pred eEEEeccCcHHHHHHHHHHHhccC-----------------CCccEEEEEeecccCChHHHHHHHhccccEEEecchhhh
Confidence 789999998876666655443221 357999999987753322212233456889999999987
Q ss_pred hhHhHHhH----------------------HHHHHHhcccCccccccccccccccccccchh--------------hhh-
Q 011620 210 LREAYQAW----------------------LPTVLQLTRSDNENRFSDASTFLPSAFGSLKT--------------IRR- 252 (481)
Q Consensus 210 ~~~~~~~~----------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~- 252 (481)
-+....++ +..++.++.-.-++-|......+...+..... +.+
T Consensus 537 KN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrA 616 (941)
T KOG0389|consen 537 KNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRA 616 (941)
T ss_pred hccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHH
Confidence 55432221 12222222211122222211111111111100 000
Q ss_pred -----cccccc----CCCCCCccee---eEEEeEEEecCccccc-------------------------ccccCCceeee
Q 011620 253 -----CGVERG----FKDKPYPRLV---KMVLSATLTQDPNKLA-------------------------QLDLHHPLFLT 295 (481)
Q Consensus 253 -----~~~~~~----~~~~~~~~~~---~i~~Sat~~~~~~~~~-------------------------~~~~~~~~~~~ 295 (481)
..+.+- .....-++.+ .+.||..-..--..++ +..-..|..+.
T Consensus 617 K~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R 696 (941)
T KOG0389|consen 617 KTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFR 696 (941)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHH
Confidence 000000 0000111111 1222222100000000 00000111100
Q ss_pred cCC---------------------------------ccccCCcccccce---------ecccCCCcHHHHHHHHHhc--C
Q 011620 296 TGE---------------------------------TRYKLPERLESYK---------LICESKLKPLYLVALLQSL--G 331 (481)
Q Consensus 296 ~~~---------------------------------~~~~~~~~~~~~~---------~~~~~~~k~~~l~~~l~~~--~ 331 (481)
.-. .++.+......+. ...-...|...|..+|... .
T Consensus 697 ~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~ 776 (941)
T KOG0389|consen 697 SIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKK 776 (941)
T ss_pred HhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhc
Confidence 000 0000000000000 0011345666677776544 4
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCC-ce-EEEecccccccCCCCCCCEEEE
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQ-VLVSSDAMTRGMDVEGVNNVVN 409 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vLi~t~~l~~Gidi~~~~~vI~ 409 (481)
+.++|||..-....+-+...|..++ ++...+.|...-.+|+.+++.|...+ +. .|++|.+.+.|||+..+++||+
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~l~---~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi 853 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDTLG---YKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII 853 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHhcC---ceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE
Confidence 5799999999999999998998777 89999999999999999999999765 44 4899999999999999999999
Q ss_pred ecCCCChhhHHHHHhhhhcCCCCCcEEEE
Q 011620 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (481)
Q Consensus 410 ~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~ 438 (481)
+|...++-+=.|.--|++|.|+...+.++
T Consensus 854 hD~dFNP~dD~QAEDRcHRvGQtkpVtV~ 882 (941)
T KOG0389|consen 854 HDIDFNPYDDKQAEDRCHRVGQTKPVTVY 882 (941)
T ss_pred eecCCCCcccchhHHHHHhhCCcceeEEE
Confidence 99999999999999999999988776665
No 133
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.79 E-value=8.7e-18 Score=154.04 Aligned_cols=313 Identities=14% Similarity=0.110 Sum_probs=197.5
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (481)
..+-|+|++-+...++ +|.++++...+|.|||..++..+-.+... . -.+|+||..- ...|++.+.+|++.+
T Consensus 197 s~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyraE----w-plliVcPAsv-rftWa~al~r~lps~ 267 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRAE----W-PLLIVCPASV-RFTWAKALNRFLPSI 267 (689)
T ss_pred HhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhhc----C-cEEEEecHHH-hHHHHHHHHHhcccc
Confidence 3678999998877665 68899999999999999977644333222 2 3999999864 446999999998865
Q ss_pred CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh
Q 011620 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~ 208 (481)
.. +.+..++...... +.....|.|.+++.+..+-.. +.-..+.+||+||+|.
T Consensus 268 ~p-i~vv~~~~D~~~~------------------------~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~ 319 (689)
T KOG1000|consen 268 HP-IFVVDKSSDPLPD------------------------VCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHM 319 (689)
T ss_pred cc-eEEEecccCCccc------------------------cccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhh
Confidence 43 3333333221111 123357999999998776543 2233478999999998
Q ss_pred hhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecC---------
Q 011620 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD--------- 279 (481)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~--------- 279 (481)
+-+....+ ...+...... ..+++++|+|+.-.
T Consensus 320 Lk~sktkr-~Ka~~dllk~--------------------------------------akhvILLSGTPavSRP~elytqi 360 (689)
T KOG1000|consen 320 LKDSKTKR-TKAATDLLKV--------------------------------------AKHVILLSGTPAVSRPSELYTQI 360 (689)
T ss_pred hhccchhh-hhhhhhHHHH--------------------------------------hhheEEecCCcccCCchhhhhhh
Confidence 75543322 2222222111 11455566655311
Q ss_pred ----------cccccccccCCc---eeeecCC-----------------------ccccCCcccccce------------
Q 011620 280 ----------PNKLAQLDLHHP---LFLTTGE-----------------------TRYKLPERLESYK------------ 311 (481)
Q Consensus 280 ----------~~~~~~~~~~~~---~~~~~~~-----------------------~~~~~~~~~~~~~------------ 311 (481)
.-.+...++... ....... -...++.......
T Consensus 361 ~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~ 440 (689)
T KOG1000|consen 361 RAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMD 440 (689)
T ss_pred hhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHH
Confidence 111111111100 0000000 0000000000000
Q ss_pred -------------------------ecccCCCcHHHHHHHHHh------cCCCcEEEEcCCchhHHHHHHHHhhcCCcce
Q 011620 312 -------------------------LICESKLKPLYLVALLQS------LGEEKCIVFTSSVESTHRLCTLLNHFGELRI 360 (481)
Q Consensus 312 -------------------------~~~~~~~k~~~l~~~l~~------~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~ 360 (481)
.......|.....+.+.. ..+.+.+||+.+....+.+...+.+.+ +
T Consensus 441 ~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~---v 517 (689)
T KOG1000|consen 441 DLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRK---V 517 (689)
T ss_pred HHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcC---C
Confidence 000011122222222222 135689999999999999999998877 7
Q ss_pred EEEEccCccChHHHHHHHHHHhcC-CceE-EEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEE
Q 011620 361 KIKEYSGLQRQSVRSKTLKAFREG-KIQV-LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (481)
Q Consensus 361 ~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-Li~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~ 438 (481)
....+.|..++.+|....+.|+.. +..| +++....+.|+++...+.||+..++|++.-++|.-.|++|.|+.+.+.+.
T Consensus 518 g~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ 597 (689)
T KOG1000|consen 518 GSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQ 597 (689)
T ss_pred CeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEE
Confidence 888999999999999999999964 5666 67778899999999999999999999999999999999999988765544
Q ss_pred Ee
Q 011620 439 LH 440 (481)
Q Consensus 439 ~~ 440 (481)
+.
T Consensus 598 yl 599 (689)
T KOG1000|consen 598 YL 599 (689)
T ss_pred EE
Confidence 43
No 134
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=1.9e-17 Score=157.27 Aligned_cols=307 Identities=19% Similarity=0.260 Sum_probs=192.6
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc-cCCccEEEEcccHHHHHHHHHHHH-Hhccc
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFA-AIAPA 127 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~-~~~~~~lil~P~~~L~~q~~~~~~-~~~~~ 127 (481)
....++.+.+..+-+ ++-++|.+.||||||.. +.+++...+ .....+-..-|.+.-+..+++... .+...
T Consensus 356 Pvf~~R~~ll~~ir~----n~vvvivgETGSGKTTQ----l~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRE----NQVVVIVGETGSGKTTQ----LAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred chHHHHHHHHHHHhh----CcEEEEEecCCCCchhh----hHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 334455555554443 77889999999999987 334433332 222234444599888877665543 34222
Q ss_pred cCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecch
Q 011620 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H 207 (481)
+| ..+|..-..++. ..+...|=++|.+.|++-..... .+..+++||+||||
T Consensus 428 lG----~~VGYsIRFEdv-----------------------T~~~T~IkymTDGiLLrEsL~d~--~L~kYSviImDEAH 478 (1042)
T KOG0924|consen 428 LG----DTVGYSIRFEDV-----------------------TSEDTKIKYMTDGILLRESLKDR--DLDKYSVIIMDEAH 478 (1042)
T ss_pred cc----cccceEEEeeec-----------------------CCCceeEEEeccchHHHHHhhhh--hhhheeEEEechhh
Confidence 23 222222111110 01224688999999987665533 36689999999999
Q ss_pred hhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccc
Q 011620 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLD 287 (481)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~ 287 (481)
.-.- ..+.+--++....... ...++|.+|||+. ...+...+
T Consensus 479 ERsl--NtDilfGllk~~larR-----------------------------------rdlKliVtSATm~--a~kf~nfF 519 (1042)
T KOG0924|consen 479 ERSL--NTDILFGLLKKVLARR-----------------------------------RDLKLIVTSATMD--AQKFSNFF 519 (1042)
T ss_pred hccc--chHHHHHHHHHHHHhh-----------------------------------ccceEEEeecccc--HHHHHHHh
Confidence 6211 0111111222111111 2347899999984 44444444
Q ss_pred cCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhc-------CCCcEEEEcCCchhHHHHHHHHhhc-----
Q 011620 288 LHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-------GEEKCIVFTSSVESTHRLCTLLNHF----- 355 (481)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-------~~~~~lVf~~s~~~~~~l~~~l~~~----- 355 (481)
..-|.+.+.+..-+ .........-.+++...+++. ..+-+|||....+..+..+..+++.
T Consensus 520 gn~p~f~IpGRTyP--------V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~ 591 (1042)
T KOG0924|consen 520 GNCPQFTIPGRTYP--------VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLD 591 (1042)
T ss_pred CCCceeeecCCccc--------eEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhh
Confidence 44555544444321 111122223334444444432 4578999999998888877776542
Q ss_pred --CCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEec------------------CCCC
Q 011620 356 --GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD------------------KPAY 415 (481)
Q Consensus 356 --~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~------------------~p~s 415 (481)
+..++.+..+.+.++..-+..+.+.-..|..++||+|+++++.+.+|++.+||..+ .|-|
T Consensus 592 ~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS 671 (1042)
T KOG0924|consen 592 SAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPIS 671 (1042)
T ss_pred cCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEech
Confidence 12358899999999988877777666678889999999999999999999999755 3567
Q ss_pred hhhHHHHHhhhhcCCCCCcEEEEEeC
Q 011620 416 IKTYIHRAGRTARAGQLGRCFTLLHK 441 (481)
Q Consensus 416 ~~~~~Q~~GR~~R~~~~g~~i~~~~~ 441 (481)
.++-.||.|||||.| +|.|+-++..
T Consensus 672 ~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 672 QANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred hccchhhccccCCCC-Ccceeeehhh
Confidence 778899999999985 8999998876
No 135
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=2.5e-18 Score=160.02 Aligned_cols=370 Identities=13% Similarity=0.071 Sum_probs=228.2
Q ss_pred hccCCCccc-CCCCCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHH
Q 011620 5 KKKSMPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT 83 (481)
Q Consensus 5 ~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT 83 (481)
-++.+|... +...|..-.+|-.. +=+.+.+.++++.-.....+|.+++..+-+ |++.++...|.+||.
T Consensus 247 ~~~~~~~~K~~~~~~~R~A~~K~~-------~~E~~~~~~~~~~~E~~~~~~~~~~~~~~~----G~~~~~~~~~~~GK~ 315 (1034)
T KOG4150|consen 247 GRKKIPLAKLFSAMKKREASFKSD-------FWESIRSLLNKNTGESGIAISLELLKFASE----GRADGGNEARQAGKG 315 (1034)
T ss_pred ccccchHHHHHhhccchhhhhhhh-------HHHHHHHHHhcccccchhhhhHHHHhhhhh----cccccccchhhcCCc
Confidence 344445554 55556655555555 334455667778778999999999887665 899999999999999
Q ss_pred HHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc----cCceEEEeecCCchHHHHHHhhhcCccccCcc
Q 011620 84 LSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159 (481)
Q Consensus 84 ~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (481)
+++..+....+.... ....++..|++++++...+.+.-.... -+--|....+.....+.
T Consensus 316 ~~~~~~s~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~--------------- 378 (1034)
T KOG4150|consen 316 TCPTSGSRKFQTLCH--ATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKS--------------- 378 (1034)
T ss_pred cCcccchhhhhhcCc--ccceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHH---------------
Confidence 999988877766543 335889999999887544332111100 01123333333333222
Q ss_pred CCchhHHHhhccCCcEEEeCChhHHHhhhcCC-C--cccCCccEEEEecchhhhhH---hHHhHHHHHHHhcccCccccc
Q 011620 160 YDPEDVLQELQSAVDILVATPGRLMDHINATR-G--FTLEHLCYLVVDETDRLLRE---AYQAWLPTVLQLTRSDNENRF 233 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~-~--~~~~~~~~iViDE~H~~~~~---~~~~~~~~i~~~~~~~~~~~~ 233 (481)
..+..+.+++++.|+.......-.. . ..+-...++++||+|..... .....++.+..+..--..
T Consensus 379 -------A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~--- 448 (1034)
T KOG4150|consen 379 -------ALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEA--- 448 (1034)
T ss_pred -------HHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHh---
Confidence 2344677999999988765443211 1 12334568999999964321 111222222222211000
Q ss_pred cccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCce-eeecCCccccCCccccccee
Q 011620 234 SDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL-FLTTGETRYKLPERLESYKL 312 (481)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 312 (481)
....+++-.++|+.+..........-+.+ .+....+ + ....++..
T Consensus 449 ------------------------------~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS-P---s~~K~~V~ 494 (1034)
T KOG4150|consen 449 ------------------------------SINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS-P---SSEKLFVL 494 (1034)
T ss_pred ------------------------------hcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC-C---CccceEEE
Confidence 02336666777776554443332222222 2221111 1 11111111
Q ss_pred c---------ccCCCcHHHHHHHHHh--cCCCcEEEEcCCchhHHHHHHHHhhc----CC-cceEEEEccCccChHHHHH
Q 011620 313 I---------CESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHF----GE-LRIKIKEYSGLQRQSVRSK 376 (481)
Q Consensus 313 ~---------~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~~~l~~~----~~-~~~~~~~~~~~~~~~~r~~ 376 (481)
- ...+.+......++-+ ..+-++|-||++++.++.+.....+. ++ .-..+.-+.|+....+|..
T Consensus 495 WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRK 574 (1034)
T KOG4150|consen 495 WNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRK 574 (1034)
T ss_pred eCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHH
Confidence 1 1111122222222221 14669999999999999988766542 11 0013445788999999999
Q ss_pred HHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchh
Q 011620 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCL 446 (481)
Q Consensus 377 ~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~ 446 (481)
+....-.|+..-+|+|+.++-|||+.+++.|++.++|.|++++.|..||+||.++++.++.++....+..
T Consensus 575 IE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ 644 (1034)
T KOG4150|consen 575 IESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQ 644 (1034)
T ss_pred HHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhh
Confidence 9999889999999999999999999999999999999999999999999999988888777776554443
No 136
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.76 E-value=4e-17 Score=164.14 Aligned_cols=349 Identities=17% Similarity=0.125 Sum_probs=208.4
Q ss_pred CCchhhHHHHHhhhCCCCC-CCCEEEECCCCchHHHHhHHHHHHHHHhhcc-----CCccEEEEcccHHHHHHHHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLF-ERDLCINSPTGSGKTLSYALPIVQTLSNRAV-----RCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~-~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~-----~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
.+|.||++-++.+. -+.+ +=+.|++..+|-|||+..+..+.....+... ...-.||+||+ .|+.-|..++.+
T Consensus 975 ~LRkYQqEGVnWLa-FLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLA-FLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHhccHHHH-HHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 58999999877432 1111 2468999999999999977766655444311 12238999998 688889999999
Q ss_pred hccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEE
Q 011620 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iVi 203 (481)
|++. +++..++|........+. --++++|+|++|+.+.+...- +.-.++.++|+
T Consensus 1053 f~pf--L~v~~yvg~p~~r~~lR~---------------------q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVL 1106 (1549)
T KOG0392|consen 1053 FFPF--LKVLQYVGPPAERRELRD---------------------QYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVL 1106 (1549)
T ss_pred hcch--hhhhhhcCChHHHHHHHh---------------------hccccceEEeeHHHHHHHHHH---HHhcccceEEe
Confidence 9986 677777776544333221 113469999999999765443 22235789999
Q ss_pred ecchhhhhHhHH--hHHHHHHHh---cccCcc--cccccc----ccccccccccchhhhhccccccCCCCCCcceeeEEE
Q 011620 204 DETDRLLREAYQ--AWLPTVLQL---TRSDNE--NRFSDA----STFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (481)
Q Consensus 204 DE~H~~~~~~~~--~~~~~i~~~---~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (481)
||-|.+-+.... ..+..+... ..++++ +...+. .-.+|.+.+..+.+.. ...+.|+.
T Consensus 1107 DEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqs------------rf~kpI~a 1174 (1549)
T KOG0392|consen 1107 DEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQS------------RFGKPILA 1174 (1549)
T ss_pred cCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHH------------Hhcchhhh
Confidence 999976443321 222222211 111111 000000 0112233333222211 11123333
Q ss_pred eEEEecCccc----------ccc---------------cccCCceee----e-----------------------cCCcc
Q 011620 273 SATLTQDPNK----------LAQ---------------LDLHHPLFL----T-----------------------TGETR 300 (481)
Q Consensus 273 Sat~~~~~~~----------~~~---------------~~~~~~~~~----~-----------------------~~~~~ 300 (481)
|-.+...... ++. ..+..-.+. . .....
T Consensus 1175 sRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~ 1254 (1549)
T KOG0392|consen 1175 SRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGE 1254 (1549)
T ss_pred hcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccch
Confidence 3333211000 000 000000000 0 00000
Q ss_pred ccCC-cc------c-------ccc------------------------eecccCCCcHHHHHHHHHhc------------
Q 011620 301 YKLP-ER------L-------ESY------------------------KLICESKLKPLYLVALLQSL------------ 330 (481)
Q Consensus 301 ~~~~-~~------~-------~~~------------------------~~~~~~~~k~~~l~~~l~~~------------ 330 (481)
.... .. . .+. -.......|...|..++..-
T Consensus 1255 ~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~ 1334 (1549)
T KOG0392|consen 1255 ESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGT 1334 (1549)
T ss_pred hccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccC
Confidence 0000 00 0 000 00011233444455555322
Q ss_pred ----CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcC-CceEE-EecccccccCCCCCC
Q 011620 331 ----GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVL-VSSDAMTRGMDVEGV 404 (481)
Q Consensus 331 ----~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vL-i~t~~l~~Gidi~~~ 404 (481)
.+.++||||.-..+++.+.+.|-+.....+....+.|..++.+|.++.++|+++ .++|| ++|...+-|+|+.+.
T Consensus 1335 ~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGA 1414 (1549)
T KOG0392|consen 1335 PSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGA 1414 (1549)
T ss_pred cchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCC
Confidence 235899999999999999998876554455666899999999999999999998 68885 677899999999999
Q ss_pred CEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEE
Q 011620 405 NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (481)
Q Consensus 405 ~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~ 438 (481)
+.||+++..|++..=+|.+-||+|.|++..+-+|
T Consensus 1415 DTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1415 DTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred ceEEEEecCCCchhhHHHHHHHHhhcCceeeeee
Confidence 9999999999999999999999999987766555
No 137
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.76 E-value=3.3e-17 Score=143.75 Aligned_cols=187 Identities=34% Similarity=0.546 Sum_probs=133.9
Q ss_pred HcCCCCCchhhHHHHHhhhCCCCCC-CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 011620 45 NMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~-~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
.+++.+++++|.+++..+.+ . +.+++.+|||+|||.+++.+++..+.... ..+++|++|+..++.|+...+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~--~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGK--GKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccC--CCcEEEEeCCHHHHHHHHHHHHH
Confidence 34677999999999998886 5 89999999999999998888888776542 34699999999999999999998
Q ss_pred hccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCC-cEEEeCChhHHHhhhcCCCcccCCccEEE
Q 011620 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV-DILVATPGRLMDHINATRGFTLEHLCYLV 202 (481)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~I~v~T~~~l~~~l~~~~~~~~~~~~~iV 202 (481)
.............++....... .....+. +++++|++.+...+.... .....++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iI 134 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQL---------------------RKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVI 134 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHH---------------------HHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEE
Confidence 8765442333333333222221 1222333 999999999999888743 4566788999
Q ss_pred EecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccc
Q 011620 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (481)
Q Consensus 203 iDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~ 282 (481)
+||+|.+....+...+..++.... ...+.+++|||+......
T Consensus 135 iDE~h~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~v~~saT~~~~~~~ 176 (201)
T smart00487 135 LDEAHRLLDGGFGDQLEKLLKLLP--------------------------------------KNVQLLLLSATPPEEIEN 176 (201)
T ss_pred EECHHHHhcCCcHHHHHHHHHhCC--------------------------------------ccceEEEEecCCchhHHH
Confidence 999999876445555555555441 223789999999877777
Q ss_pred ccccccCCceeeecC
Q 011620 283 LAQLDLHHPLFLTTG 297 (481)
Q Consensus 283 ~~~~~~~~~~~~~~~ 297 (481)
...........+...
T Consensus 177 ~~~~~~~~~~~~~~~ 191 (201)
T smart00487 177 LLELFLNDPVFIDVG 191 (201)
T ss_pred HHHHhcCCCEEEeCC
Confidence 666665554444333
No 138
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=3.1e-17 Score=163.02 Aligned_cols=356 Identities=16% Similarity=0.179 Sum_probs=203.0
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.|. .|++.|.-.--. + .+.-+.++.||-|||+++.+|+.-.... |..|-|+|.+..|+..-++++..+.
T Consensus 75 lG~-r~ydVQliGglv-L-----h~G~IAEMkTGEGKTLvAtLpayLnAL~----GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 75 LGK-RPYDVQIIGGII-L-----DLGSVAEMKTGEGKTITSIAPVYLNALT----GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred hCC-CcCchHHHHHHH-H-----hcCCeeeecCCCCccHHHHHHHHHHHhc----CCceEEEecchhhhhhhHHHHHHHH
Confidence 354 677777544322 1 3455899999999999999887533333 3359999999999998899999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHH-HhhhcC-----CCcccCCcc
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-DHINAT-----RGFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~-~~l~~~-----~~~~~~~~~ 199 (481)
..+|+.|++..++........ ...++|+.+|..-|- +.+... .......+.
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~-----------------------aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~ 200 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKRE-----------------------AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLN 200 (925)
T ss_pred HHhCCceeeeCCCCChHHHHH-----------------------hccCCCeeecCcccchhhhhhcccccHHHhcCcccc
Confidence 999999999887655443321 234699999986652 222211 112245678
Q ss_pred EEEEecchhhhhH----------------hHHhHHHHHHHhcccC------cccc--ccc-----ccccc--ccccccc-
Q 011620 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSD------NENR--FSD-----ASTFL--PSAFGSL- 247 (481)
Q Consensus 200 ~iViDE~H~~~~~----------------~~~~~~~~i~~~~~~~------~~~~--~~~-----~~~~~--~~~~~~~- 247 (481)
+.||||+|.++-+ .....+..+...+... .... +.. ....+ ...+...
T Consensus 201 faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n 280 (925)
T PRK12903 201 FCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIEN 280 (925)
T ss_pred eeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhh
Confidence 9999999964221 1122222222221110 0000 000 00000 0000000
Q ss_pred -----------h---hhhhc---------------cccccCCCCCC---------------------------------c
Q 011620 248 -----------K---TIRRC---------------GVERGFKDKPY---------------------------------P 265 (481)
Q Consensus 248 -----------~---~~~~~---------------~~~~~~~~~~~---------------------------------~ 265 (481)
. ..... ..++-+....| .
T Consensus 281 ~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~ 360 (925)
T PRK12903 281 SELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRL 360 (925)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHh
Confidence 0 00000 00000000000 0
Q ss_pred ceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHh--cCCCcEEEEcCCch
Q 011620 266 RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE 343 (481)
Q Consensus 266 ~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~ 343 (481)
..++.+||+|.......+.. .++..++......+........ .+......|...+...+.. ..+.|+||.|.|++
T Consensus 361 Y~kLsGMTGTA~te~~Ef~~--iY~l~Vv~IPTnkP~~R~D~~d-~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe 437 (925)
T PRK12903 361 FKKLSGMTGTAKTEEQEFID--IYNMRVNVVPTNKPVIRKDEPD-SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVE 437 (925)
T ss_pred cchhhccCCCCHHHHHHHHH--HhCCCEEECCCCCCeeeeeCCC-cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 01234566665433322222 2222222222222222111111 1223334455555544432 25679999999999
Q ss_pred hHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCC-ceEEEecccccccCCCCCCC--------EEEEecCCC
Q 011620 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEGVN--------NVVNYDKPA 414 (481)
Q Consensus 344 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vLi~t~~l~~Gidi~~~~--------~vI~~~~p~ 414 (481)
..+.+..+|.+.+ ++...+++.-...+-. ++. .+|+ -.|.|||+++++|.||.--. +||....+.
T Consensus 438 ~SE~ls~~L~~~g---i~h~vLNAk~~e~EA~-IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerhe 511 (925)
T PRK12903 438 DSETLHELLLEAN---IPHTVLNAKQNAREAE-IIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAE 511 (925)
T ss_pred HHHHHHHHHHHCC---CCceeecccchhhHHH-HHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCc
Confidence 9999999999876 6666777653332222 222 3453 56899999999999996211 899999999
Q ss_pred ChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 415 s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
|..--.|..||+||.|.+|.+-.|++-.|.
T Consensus 512 SrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 512 SRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred hHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 998889999999999999999999987663
No 139
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.73 E-value=2.4e-17 Score=133.98 Aligned_cols=118 Identities=39% Similarity=0.580 Sum_probs=106.6
Q ss_pred CcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccc
Q 011620 318 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (481)
Q Consensus 318 ~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l 395 (481)
.+...+...+... .++++||||++...++.+++.|.+.+ ..+..+|++++..+|..+++.|+++...+|++|+++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPG---IKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChh
Confidence 5666677777655 37799999999999999999998754 788999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEE
Q 011620 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (481)
Q Consensus 396 ~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~ 438 (481)
++|+|+|++++||+++.|++...+.|++||++|.|+.|.+++|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999988877653
No 140
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=9e-17 Score=155.28 Aligned_cols=310 Identities=17% Similarity=0.227 Sum_probs=179.9
Q ss_pred hCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc---cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEE--eec
Q 011620 63 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGL--AVG 137 (481)
Q Consensus 63 ~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~--~~~ 137 (481)
.+++..+.-+||+|.||||||...--.+. ..-.++ ..+..+-|.-|++.-+.-+++....-+..++-+|.. .+.
T Consensus 265 MEaIn~n~vvIIcGeTGsGKTTQvPQFLY-EAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd 343 (1172)
T KOG0926|consen 265 MEAINENPVVIICGETGSGKTTQVPQFLY-EAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFD 343 (1172)
T ss_pred HHHhhcCCeEEEecCCCCCccccchHHHH-HcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEec
Confidence 34444577799999999999987322221 111111 112245566699887776665543322223433322 222
Q ss_pred CCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhh--hhHhHH
Q 011620 138 QSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL--LREAYQ 215 (481)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~--~~~~~~ 215 (481)
+. +.+...|-++|.+.|++-+.. .|.+..++.||+||||.- ..+-..
T Consensus 344 ~t-----------------------------i~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDILi 392 (1172)
T KOG0926|consen 344 GT-----------------------------IGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDILI 392 (1172)
T ss_pred cc-----------------------------cCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHHH
Confidence 21 234468999999999998886 366889999999999962 111111
Q ss_pred hHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecC-cccccccccCCceee
Q 011620 216 AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD-PNKLAQLDLHHPLFL 294 (481)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~-~~~~~~~~~~~~~~~ 294 (481)
..+.+++.+...... . .-.....+.|+||||+.-. +..-...+-..|-++
T Consensus 393 GmLSRiV~LR~k~~k---------------e--------------~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPli 443 (1172)
T KOG0926|consen 393 GMLSRIVPLRQKYYK---------------E--------------QCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLI 443 (1172)
T ss_pred HHHHHHHHHHHHHhh---------------h--------------hcccCceeEEEEeeeEEecccccCceecCCCCcee
Confidence 222222222211100 0 0111345899999998622 221222222222233
Q ss_pred ecCCccccCCcccccceecccCCCcHHHHHHHH-------HhcCCCcEEEEcCCchhHHHHHHHHhhcCCc---------
Q 011620 295 TTGETRYKLPERLESYKLICESKLKPLYLVALL-------QSLGEEKCIVFTSSVESTHRLCTLLNHFGEL--------- 358 (481)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l-------~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~--------- 358 (481)
......+.+ .+ |+..+.+ .+++.+.. +..+.+.+|||+....+++.+++.|++..+.
T Consensus 444 kVdARQfPV--sI-HF~krT~----~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k 516 (1172)
T KOG0926|consen 444 KVDARQFPV--SI-HFNKRTP----DDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKK 516 (1172)
T ss_pred eeecccCce--EE-EeccCCC----chHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhh
Confidence 333333221 11 2222222 23444333 2347889999999999999999999763110
Q ss_pred --------------------------------------------------------------------------------
Q 011620 359 -------------------------------------------------------------------------------- 358 (481)
Q Consensus 359 -------------------------------------------------------------------------------- 358 (481)
T Consensus 517 ~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~ 596 (1172)
T KOG0926|consen 517 NVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQG 596 (1172)
T ss_pred hhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhc
Confidence
Q ss_pred -------ceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCC------------------
Q 011620 359 -------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------------------ 413 (481)
Q Consensus 359 -------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p------------------ 413 (481)
.+-|..+.+-++..++..+.+.--.|..-.+|+|+.+++.+.||++..||.-+.-
T Consensus 597 ~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~w 676 (1172)
T KOG0926|consen 597 KGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDW 676 (1172)
T ss_pred cCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEe
Confidence 0123344444455555555555556666679999999999999999999975422
Q ss_pred CChhhHHHHHhhhhcCCCCCcEEEEEeC
Q 011620 414 AYIKTYIHRAGRTARAGQLGRCFTLLHK 441 (481)
Q Consensus 414 ~s~~~~~Q~~GR~~R~~~~g~~i~~~~~ 441 (481)
-|.+.--||+|||||.| .|-|+-+++.
T Consensus 677 iSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 677 ISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred eeccccchhccccCCCC-CCceeehhhh
Confidence 12344469999999986 7888887774
No 141
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.72 E-value=4.6e-16 Score=155.71 Aligned_cols=130 Identities=24% Similarity=0.275 Sum_probs=94.0
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.|+ .|++.|.-. .+.-.+.-++++.||.|||+++.+|+.-.... |..|.|+|++..|+.+-++++..+.
T Consensus 73 lG~-r~ydvQlig------~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~----G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGL-RHFDVQLIG------GLVLNDGKIAEMKTGEGKTLVATLPAYLNALT----GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCC-CCCchHhhh------hHhhcCCccccccCCCCchHHHHHHHHHHHhc----CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 465 688888543 22235678999999999999999888533322 3469999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-----HHhhhcC-CCcccCCcc
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-----MDHINAT-RGFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-----~~~l~~~-~~~~~~~~~ 199 (481)
..+|+.|++..++.+..+.... ..++|+.+|..-| .+.+... .......+.
T Consensus 142 ~~LGLsvg~i~~~~~~~err~a-----------------------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~ 198 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKN-----------------------YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFN 198 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHh-----------------------cCCCCEecCCccccccchhhccCcChHHhhccccc
Confidence 9999999998887665544222 4469999998644 3332211 112246688
Q ss_pred EEEEecchhh
Q 011620 200 YLVVDETDRL 209 (481)
Q Consensus 200 ~iViDE~H~~ 209 (481)
+.||||+|.+
T Consensus 199 faIVDEvDSi 208 (870)
T CHL00122 199 YCIIDEVDSI 208 (870)
T ss_pred eeeeecchhh
Confidence 9999999964
No 142
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.70 E-value=4.3e-17 Score=118.84 Aligned_cols=77 Identities=36% Similarity=0.627 Sum_probs=72.7
Q ss_pred HHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCC
Q 011620 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (481)
Q Consensus 351 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~ 430 (481)
.|+..+ +.+..+||+++..+|..+++.|++++..|||||+++++|+|+|.+++||++++|+++..|.|++||++|.|
T Consensus 2 ~L~~~~---~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKG---IKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTT---SSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCC---CcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 455555 89999999999999999999999999999999999999999999999999999999999999999999975
No 143
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.68 E-value=4.3e-16 Score=145.15 Aligned_cols=278 Identities=21% Similarity=0.204 Sum_probs=174.8
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhc
Q 011620 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 151 (481)
++-+|||.||||+- +++.+...+ +-+|..|.+-|+.++++.+... |+.+.+++|.......-.
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~ak----sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~----- 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKSAK----SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN----- 256 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhhhc----cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC-----
Confidence 45599999999998 455554432 4789999999999999888877 888888888654322100
Q ss_pred CccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHH-hHHHHHHHhcccCcc
Q 011620 152 PKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ-AWLPTVLQLTRSDNE 230 (481)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~-~~~~~i~~~~~~~~~ 230 (481)
...+..+=||.|+..- -..+++.|+||.+.+.+.+.+ .|-+.+++..+.--
T Consensus 257 ------------------~~~a~hvScTVEM~sv---------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEi- 308 (700)
T KOG0953|consen 257 ------------------GNPAQHVSCTVEMVSV---------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEI- 308 (700)
T ss_pred ------------------CCcccceEEEEEEeec---------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhh-
Confidence 0125677777665521 123789999999998877665 33444454443210
Q ss_pred ccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccc
Q 011620 231 NRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESY 310 (481)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (481)
+.. +.+ ..-.++...++ ..+.. .....
T Consensus 309 -------------------------------------HLC---Gep--svldlV~~i~k-----~TGd~------vev~~ 335 (700)
T KOG0953|consen 309 -------------------------------------HLC---GEP--SVLDLVRKILK-----MTGDD------VEVRE 335 (700)
T ss_pred -------------------------------------hcc---CCc--hHHHHHHHHHh-----hcCCe------eEEEe
Confidence 000 000 00111111100 00000 00011
Q ss_pred eecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhc--CCceE
Q 011620 311 KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GKIQV 388 (481)
Q Consensus 311 ~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~v 388 (481)
+.+.......+.+..-+.....+-++|-+ |++....+...+.+.+. .++..+.|++++..|.+....|++ ++++|
T Consensus 336 YeRl~pL~v~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~g~--~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv 412 (700)
T KOG0953|consen 336 YERLSPLVVEETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKAGN--HKCAVIYGSLPPETRLAQAALFNDPSNECDV 412 (700)
T ss_pred ecccCcceehhhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHhcC--cceEEEecCCCCchhHHHHHHhCCCCCccce
Confidence 11111111122334445555666666655 46778888888888763 568999999999999999999997 89999
Q ss_pred EEecccccccCCCCCCCEEEEecCC---------CChhhHHHHHhhhhcCCC---CCcEEEEEeCCcchhhhhhccccc
Q 011620 389 LVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYIHRAGRTARAGQ---LGRCFTLLHKDEVCLVGCLTPLLL 455 (481)
Q Consensus 389 Li~t~~l~~Gidi~~~~~vI~~~~p---------~s~~~~~Q~~GR~~R~~~---~g~~i~~~~~~~~~~~~~i~~~~~ 455 (481)
||||+..++|+|+ +++.||++++- .+..+..|.+|||||.|. .|.+.++- .+.+..+.+.+.
T Consensus 413 lVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~----~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 413 LVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH----SEDLKLLKRILK 486 (700)
T ss_pred EEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee----HhhHHHHHHHHh
Confidence 9999999999999 58899988753 456788999999999753 34555543 334444444444
No 144
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=3.9e-15 Score=148.84 Aligned_cols=130 Identities=28% Similarity=0.326 Sum_probs=95.9
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.|. .|++.|. +..+.-.+.-+.++.||.|||+++.+|+.-.... |..|.|+|++..|+..-++++..+.
T Consensus 82 lG~-r~ydVQl------iGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~----GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 82 LGM-RHFDVQL------IGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT----GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred hCC-CcchhHH------HhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc----CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 354 6777774 3333336777999999999999999887654443 3359999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-----HHhhhc-CCCcccCCcc
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-----MDHINA-TRGFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-----~~~l~~-~~~~~~~~~~ 199 (481)
..+|+.|++..++....+.. ....++|+.+|+..| .+.+.. ........+.
T Consensus 151 ~~LGLtvg~i~~~~~~~err-----------------------~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~ 207 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERK-----------------------KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFN 207 (939)
T ss_pred HHhCCeEEEECCCCChHHHH-----------------------HhcCCCeEEecCCcccccchhhhhcccccccccCccc
Confidence 99999999988765544332 224579999998766 444432 1223456788
Q ss_pred EEEEecchhh
Q 011620 200 YLVVDETDRL 209 (481)
Q Consensus 200 ~iViDE~H~~ 209 (481)
+.||||+|.+
T Consensus 208 faIVDEvDSI 217 (939)
T PRK12902 208 YCVIDEVDSI 217 (939)
T ss_pred eEEEecccce
Confidence 9999999964
No 145
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.68 E-value=1.9e-16 Score=136.97 Aligned_cols=147 Identities=22% Similarity=0.220 Sum_probs=91.6
Q ss_pred CCchhhHHHHHhhhCCCCC---CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011620 50 SLFPVQVAVWQETIGPGLF---ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~---~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (481)
+||++|.+|+..+.+.+.. .+.+++.+|||+|||++++..+..... +++|++|+..|+.|+.+.+..+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 6899999999999865543 478999999999999998865554432 699999999999999999977654
Q ss_pred ccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCC----------CcccC
Q 011620 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR----------GFTLE 196 (481)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~----------~~~~~ 196 (481)
.. ............... ....................+++++|++.+........ .....
T Consensus 76 ~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
T PF04851_consen 76 EK-YNFFEKSIKPAYDSK---------EFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN 145 (184)
T ss_dssp TS-EEEEE--GGGCCE-S---------EEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG
T ss_pred hh-hhhcccccccccccc---------cccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc
Confidence 32 111110000000000 00000000000011223457899999999988765321 12345
Q ss_pred CccEEEEecchhhhhHh
Q 011620 197 HLCYLVVDETDRLLREA 213 (481)
Q Consensus 197 ~~~~iViDE~H~~~~~~ 213 (481)
.+++||+||||++....
T Consensus 146 ~~~~vI~DEaH~~~~~~ 162 (184)
T PF04851_consen 146 KFDLVIIDEAHHYPSDS 162 (184)
T ss_dssp SESEEEEETGGCTHHHH
T ss_pred cCCEEEEehhhhcCCHH
Confidence 67899999999987666
No 146
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=9e-15 Score=147.90 Aligned_cols=330 Identities=17% Similarity=0.198 Sum_probs=210.2
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHH-HHHhcccc
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV-FAAIAPAV 128 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~-~~~~~~~~ 128 (481)
..+|.|..+++.+.+ .+++++|.+|+|||||+++-++++. .....++++++|..+.+..+++. -.++....
T Consensus 1143 ~~n~iqtqVf~~~y~---~nd~v~vga~~gsgkt~~ae~a~l~-----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~ 1214 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYN---TNDNVLVGAPNGSGKTACAELALLR-----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLL 1214 (1674)
T ss_pred ccCCceEEEEeeeec---ccceEEEecCCCCchhHHHHHHhcC-----CccceEEEEecchHHHHHHHHHHHHHhhcccc
Confidence 347888877666554 4578999999999999998887765 34445899999999999965554 46677777
Q ss_pred CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh
Q 011620 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~ 208 (481)
|..+..+.|..+..... ....+|+|+||+++-.+- ....+++.|.||.|.
T Consensus 1215 G~~~~~l~ge~s~~lkl------------------------~~~~~vii~tpe~~d~lq------~iQ~v~l~i~d~lh~ 1264 (1674)
T KOG0951|consen 1215 GLRIVKLTGETSLDLKL------------------------LQKGQVIISTPEQWDLLQ------SIQQVDLFIVDELHL 1264 (1674)
T ss_pred CceEEecCCccccchHH------------------------hhhcceEEechhHHHHHh------hhhhcceEeeehhhh
Confidence 89999999987766542 233489999999997761 355688999999997
Q ss_pred hhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccccccccc
Q 011620 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 288 (481)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~ 288 (481)
+. ..++...+-+++ ++... .+.-.+++++.+|..+.+..+. .+.
T Consensus 1265 ig-g~~g~v~evi~S-~r~ia-------------------------------~q~~k~ir~v~ls~~lana~d~---ig~ 1308 (1674)
T KOG0951|consen 1265 IG-GVYGAVYEVICS-MRYIA-------------------------------SQLEKKIRVVALSSSLANARDL---IGA 1308 (1674)
T ss_pred hc-ccCCceEEEEee-HHHHH-------------------------------HHHHhheeEEEeehhhccchhh---ccc
Confidence 65 222222222211 10000 0000334677787776533332 222
Q ss_pred CCceeeecCCccccCCccccccee-------cccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCC----
Q 011620 289 HHPLFLTTGETRYKLPERLESYKL-------ICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE---- 357 (481)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~---- 357 (481)
....+++........|-.++.... ...+..+..+-.-.-....+++.+||+++++.+..++..+-.+..
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~ 1388 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEP 1388 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcH
Confidence 333333333322222222221111 111222222222111233577999999999999888765433211
Q ss_pred ---------------cceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEec-----------
Q 011620 358 ---------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD----------- 411 (481)
Q Consensus 358 ---------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~----------- 411 (481)
..++...-|.+++..+...+-.-|..|.+.|+|.... ..|+-.. .+.||..+
T Consensus 1389 ~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~ 1466 (1674)
T KOG0951|consen 1389 DYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSY 1466 (1674)
T ss_pred HHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccccc-ceEEEEecceeeccccccc
Confidence 1123333488888888888888899999999998877 6777664 34444333
Q ss_pred CCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchh
Q 011620 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTS 458 (481)
Q Consensus 412 ~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~ 458 (481)
.+.+.....|+.|++.| .|.|+++++....+.+++....-....
T Consensus 1467 ~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lPve 1510 (1674)
T KOG0951|consen 1467 EDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLPVE 1510 (1674)
T ss_pred ccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCchH
Confidence 34568899999999988 579999999998888887665544433
No 147
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=2.1e-14 Score=131.94 Aligned_cols=327 Identities=20% Similarity=0.290 Sum_probs=188.4
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccC
Q 011620 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~ 100 (481)
.++|++.+ .++.-.+.+++.---..+.++.+-+.-. ..++-+++.|.||+|||...--..+.......
T Consensus 24 ~Npf~~~p------~s~rY~~ilk~R~~LPvw~~k~~F~~~l----~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-- 91 (699)
T KOG0925|consen 24 INPFNGKP------YSQRYYDILKKRRELPVWEQKEEFLKLL----LNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-- 91 (699)
T ss_pred cCCCCCCc------CcHHHHHHHHHHhcCchHHhHHHHHHHH----hcCceEEEEecCCCCccccCcHHHHHHHHhhc--
Confidence 55566665 6666667777653223444444433332 34788999999999999885555555544432
Q ss_pred CccEEEEcccHHHHHHHHHHH-HHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeC
Q 011620 101 CLRALVVLPTRDLALQVKDVF-AAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T 179 (481)
..+.-.-|.+.-+-+.+... ..+ ++..+.-+|..-..+. |..+..+.+ .||
T Consensus 92 -~~v~CTQprrvaamsva~RVadEM----Dv~lG~EVGysIrfEd--------------C~~~~T~Lk---------y~t 143 (699)
T KOG0925|consen 92 -TGVACTQPRRVAAMSVAQRVADEM----DVTLGEEVGYSIRFED--------------CTSPNTLLK---------YCT 143 (699)
T ss_pred -cceeecCchHHHHHHHHHHHHHHh----ccccchhccccccccc--------------cCChhHHHH---------Hhc
Confidence 23555568887777755443 333 3333333333222221 111111111 467
Q ss_pred ChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccC
Q 011620 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
.++|++-..... .+..+++||+||||.-. --.+.+.-++......
T Consensus 144 DgmLlrEams~p--~l~~y~viiLDeahERt--lATDiLmGllk~v~~~------------------------------- 188 (699)
T KOG0925|consen 144 DGMLLREAMSDP--LLGRYGVIILDEAHERT--LATDILMGLLKEVVRN------------------------------- 188 (699)
T ss_pred chHHHHHHhhCc--ccccccEEEechhhhhh--HHHHHHHHHHHHHHhh-------------------------------
Confidence 777766555533 36789999999999620 0011111111111111
Q ss_pred CCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHH-------hcCC
Q 011620 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-------SLGE 332 (481)
Q Consensus 260 ~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-------~~~~ 332 (481)
.+..++|.+|||+. ...+..-+...|.....+.. .++.++. .....+++...++ ...+
T Consensus 189 ----rpdLk~vvmSatl~--a~Kfq~yf~n~Pll~vpg~~------PvEi~Yt---~e~erDylEaairtV~qih~~ee~ 253 (699)
T KOG0925|consen 189 ----RPDLKLVVMSATLD--AEKFQRYFGNAPLLAVPGTH------PVEIFYT---PEPERDYLEAAIRTVLQIHMCEEP 253 (699)
T ss_pred ----CCCceEEEeecccc--hHHHHHHhCCCCeeecCCCC------ceEEEec---CCCChhHHHHHHHHHHHHHhccCC
Confidence 13458999999984 23333334444444433311 1112222 2222233332222 2257
Q ss_pred CcEEEEcCCchhHHHHHHHHhhcC------CcceEEEEccCccChHHHHHHHHHHh---cC--CceEEEecccccccCCC
Q 011620 333 EKCIVFTSSVESTHRLCTLLNHFG------ELRIKIKEYSGLQRQSVRSKTLKAFR---EG--KIQVLVSSDAMTRGMDV 401 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~l~~~~------~~~~~~~~~~~~~~~~~r~~~~~~f~---~g--~~~vLi~t~~l~~Gidi 401 (481)
+-+|||....++++..++.+.... ....+|..++. ..+..+.+-.. +| ..+|+|+|++++..+.+
T Consensus 254 GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP----~~qq~iFep~p~~~~~~~~RkvVvstniaetslti 329 (699)
T KOG0925|consen 254 GDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYP----AQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTI 329 (699)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecCc----hhhccccCCCCcccCCCccceEEEEecchheeeee
Confidence 789999999999999999887421 12356776662 22222221111 12 35799999999999999
Q ss_pred CCCCEEEEec------------------CCCChhhHHHHHhhhhcCCCCCcEEEEEeCC
Q 011620 402 EGVNNVVNYD------------------KPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (481)
Q Consensus 402 ~~~~~vI~~~------------------~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~ 442 (481)
+++.+||..+ .|-|..+-.||.||+||. ++|.|+.++...
T Consensus 330 dgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 330 DGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred ccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 9999999755 356778889999999997 689999998753
No 148
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.63 E-value=1.7e-14 Score=118.95 Aligned_cols=122 Identities=39% Similarity=0.643 Sum_probs=91.6
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhh
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (481)
+++++.+|||+|||.+++..+......+ ...+++|++|+..++.|+.+.+...... +..+....+.........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~--~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 74 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL--KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEK--- 74 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc--cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHH---
Confidence 3689999999999999888877766542 3447999999999999999998887654 567777776654443321
Q ss_pred hcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHh
Q 011620 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQA 216 (481)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~ 216 (481)
....+.+|+++|++.+........ .....++++|+||+|.+.......
T Consensus 75 ------------------~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~ 122 (144)
T cd00046 75 ------------------LLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGL 122 (144)
T ss_pred ------------------HhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHH
Confidence 123567999999999988776643 335568899999999986655443
No 149
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.63 E-value=2.4e-14 Score=136.92 Aligned_cols=121 Identities=18% Similarity=0.207 Sum_probs=104.6
Q ss_pred CCCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCce-EEEec
Q 011620 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ-VLVSS 392 (481)
Q Consensus 316 ~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-vLi~t 392 (481)
++.|...|.+++... .+.++|+|+.-.++.+.+.++|...+ +....+.|.....+|..++..|+..++= .|++|
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~---Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLST 1102 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRG---YTYLRLDGSSKASDRRDVVRDWQASDIFVFLLST 1102 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhc---cceEEecCcchhhHHHHHHhhccCCceEEEEEec
Confidence 455666666666543 56799999999999999999998877 8899999999999999999999987654 48999
Q ss_pred ccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEE
Q 011620 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLL 439 (481)
Q Consensus 393 ~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~ 439 (481)
...+-||++...+.||+|+..|++..=.|...|++|.|+...+.++-
T Consensus 1103 RAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyr 1149 (1185)
T KOG0388|consen 1103 RAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYR 1149 (1185)
T ss_pred ccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeee
Confidence 99999999999999999999999999999999999999877766653
No 150
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.61 E-value=7.1e-14 Score=133.87 Aligned_cols=145 Identities=21% Similarity=0.256 Sum_probs=114.0
Q ss_pred CCCcHHHHHHHHHhc---CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhc--CCceE-E
Q 011620 316 SKLKPLYLVALLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GKIQV-L 389 (481)
Q Consensus 316 ~~~k~~~l~~~l~~~---~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~v-L 389 (481)
...|...+++.++.. ...+++|...=......+...|++.+ .....++|.....+|..+++.|.. |..+| |
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g---~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmL 803 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGG---HIYTSITGQVLVKDRQEIVDEFNQEKGGARVML 803 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCC---eeeeeecCccchhHHHHHHHHHHhccCCceEEE
Confidence 344555555544433 45566666655566677777888776 888899999999999999999984 44566 5
Q ss_pred EecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhhhhhhhhhhhh
Q 011620 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSDILQRKTRLQK 469 (481)
Q Consensus 390 i~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 469 (481)
+.-...+.|+|+-+.+|+|+.|+.|++..-.|.+.|..|.|+...+++. .+.....+..|+..+++
T Consensus 804 lSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih--------------R~~~~gTvEqrV~~LQd 869 (901)
T KOG4439|consen 804 LSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH--------------RLMCKGTVEQRVKSLQD 869 (901)
T ss_pred EEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE--------------EEEecCcHHHHHHHHHH
Confidence 5667888999999999999999999999999999999999998888776 56677778888888888
Q ss_pred hhhhhhhc
Q 011620 470 SKSRLRHK 477 (481)
Q Consensus 470 ~~~~~~~~ 477 (481)
++-.+..+
T Consensus 870 kKldlA~~ 877 (901)
T KOG4439|consen 870 KKLDLAKG 877 (901)
T ss_pred HHHHHHhh
Confidence 88777643
No 151
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.60 E-value=8.4e-15 Score=145.34 Aligned_cols=369 Identities=18% Similarity=0.199 Sum_probs=216.4
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (481)
.++++||..-++..+..+..+-+.|+...+|.|||...+-.+...+......|| .+|++|+..|.. |..+|..+.+
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP-~LvivPlstL~N-W~~Ef~kWaP-- 468 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGP-FLIIVPLSTLVN-WSSEFPKWAP-- 468 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCC-eEEeccccccCC-chhhcccccc--
Confidence 489999999999888877767789999999999999866655544444445565 899999999987 8899988876
Q ss_pred CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh
Q 011620 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~ 208 (481)
.+....+.|.......... +.....++|+++|++.+..--.. +.--++.++||||.|+
T Consensus 469 Sv~~i~YkGtp~~R~~l~~-------------------qir~gKFnVLlTtyEyiikdk~l---LsKI~W~yMIIDEGHR 526 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTK-------------------QQRHGKFNVLLTTYEYIIKDKAL---LSKISWKYMIIDEGHR 526 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHH-------------------HHhcccceeeeeeHHHhcCCHHH---HhccCCcceeeccccc
Confidence 3455556555443332221 11225589999999988651111 1122467999999998
Q ss_pred hhhHhHH--h------HHHHHHHhcccCcccccccc----ccccccccccchhhhh--------cc--------------
Q 011620 209 LLREAYQ--A------WLPTVLQLTRSDNENRFSDA----STFLPSAFGSLKTIRR--------CG-------------- 254 (481)
Q Consensus 209 ~~~~~~~--~------~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~-------------- 254 (481)
+....-. . ....-+-++.++-.+..+.. +..++..+++...+.. .+
T Consensus 527 mKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLII 606 (1157)
T KOG0386|consen 527 MKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLII 606 (1157)
T ss_pred ccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHH
Confidence 7442110 0 00000001111111111111 1112222222211100 00
Q ss_pred -----------ccc-------cCCCCCCcceeeEEEeEEEe--------------------------cCcccccccccCC
Q 011620 255 -----------VER-------GFKDKPYPRLVKMVLSATLT--------------------------QDPNKLAQLDLHH 290 (481)
Q Consensus 255 -----------~~~-------~~~~~~~~~~~~i~~Sat~~--------------------------~~~~~~~~~~~~~ 290 (481)
+.+ ...++.- .+...-+||--. .+.....++.+..
T Consensus 607 rRLHkVLRPFlLRRlKkeVE~~LPdKve-~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNH 685 (1157)
T KOG0386|consen 607 RRLHKVLRPFLLRRLKKEVEQELPDKVE-DVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNH 685 (1157)
T ss_pred HHHHHhhhHHHHHhhhHHHhhhCchhhh-HhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCC
Confidence 000 0000000 000001111000 0000011122222
Q ss_pred ceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCc
Q 011620 291 PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368 (481)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~ 368 (481)
|+...-........... ........|.+.+..++-+. .++++|.||.-......+.++|.-.. ++...+.|.
T Consensus 686 P~lf~~ve~~~~~~~~~---~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~---~kYlRLDG~ 759 (1157)
T KOG0386|consen 686 PYLFANVENSYTLHYDI---KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIRE---YKYLRLDGQ 759 (1157)
T ss_pred chhhhhhccccccccCh---hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhh---hheeeecCC
Confidence 22221111111100000 01112334455554444332 57899999999888888888887665 888999999
Q ss_pred cChHHHHHHHHHHhcCC---ceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcch
Q 011620 369 QRQSVRSKTLKAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVC 445 (481)
Q Consensus 369 ~~~~~r~~~~~~f~~g~---~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~ 445 (481)
....+|...++.|..-. ...|..|...+.|+|+..++.||+||..|++....|+--|++|.|+...+-++....-.+
T Consensus 760 TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~s 839 (1157)
T KOG0386|consen 760 TKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNS 839 (1157)
T ss_pred cchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhH
Confidence 99999999999999643 345789999999999999999999999999999999999999999988888776655444
Q ss_pred hhhhh
Q 011620 446 LVGCL 450 (481)
Q Consensus 446 ~~~~i 450 (481)
.-+.|
T Consensus 840 veE~i 844 (1157)
T KOG0386|consen 840 VEEKI 844 (1157)
T ss_pred HHHHH
Confidence 44433
No 152
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.57 E-value=1.4e-13 Score=126.68 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=102.3
Q ss_pred CcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcC-CceEE-EecccccccCCCCCCCEEEEe
Q 011620 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVL-VSSDAMTRGMDVEGVNNVVNY 410 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vL-i~t~~l~~Gidi~~~~~vI~~ 410 (481)
-+.|||.......+.+...|.+.| +.++-+.|+|++..|++.++.|++. ++.|+ ++-...+..+|+...++|++.
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaG---fscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmm 715 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAG---FSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMM 715 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccC---ceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEee
Confidence 478899888888888888888777 9999999999999999999999976 67774 555787888999999999999
Q ss_pred cCCCChhhHHHHHhhhhcCCCCCc--EEEEEeCCcchhhhhhcccccchhhhhhhhhhhhhhhhhhhhc
Q 011620 411 DKPAYIKTYIHRAGRTARAGQLGR--CFTLLHKDEVCLVGCLTPLLLCTSDILQRKTRLQKSKSRLRHK 477 (481)
Q Consensus 411 ~~p~s~~~~~Q~~GR~~R~~~~g~--~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (481)
|+=|+++.-+|...|.+|.|+... ++.|+-. +++..++..+++++....|.
T Consensus 716 DPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE----------------nsiE~kIieLQeKKa~miha 768 (791)
T KOG1002|consen 716 DPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE----------------NSIEEKIIELQEKKANMIHA 768 (791)
T ss_pred cccccHHHHhhhhhhHHhhcCccceeEEEeehh----------------ccHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999987554 4444432 34555666777777666654
No 153
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.56 E-value=4.2e-13 Score=134.73 Aligned_cols=124 Identities=18% Similarity=0.220 Sum_probs=102.9
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCC--ceEEEecccccccCCCCCCCEEE
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDAMTRGMDVEGVNNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLi~t~~l~~Gidi~~~~~vI 408 (481)
.+.++|||+.-..+.+.+..+|...| +....+.|...-.+|++.+++|+.+. ...|++|...+.|||+.+.+.||
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHg---ylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVv 1351 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHG---YLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVV 1351 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcc---eEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEE
Confidence 45699999999999999999999888 89999999999999999999999875 45688999999999999999999
Q ss_pred EecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhhhh
Q 011620 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSDIL 461 (481)
Q Consensus 409 ~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 461 (481)
+||..|++..=.|.--|.+|.|+...+-+|-.-++ +.|++.+.+.++..
T Consensus 1352 FYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe----~TIEeniLkkanqK 1400 (1958)
T KOG0391|consen 1352 FYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISE----RTIEENILKKANQK 1400 (1958)
T ss_pred EecCCCCchhhhHHHHHHHhhcCccceEEEEeecc----chHHHHHHhhhhHH
Confidence 99999999999999999999988776666644333 23444444444433
No 154
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=1e-13 Score=140.27 Aligned_cols=124 Identities=18% Similarity=0.206 Sum_probs=93.7
Q ss_pred cCCCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCC-ceEEEe
Q 011620 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVS 391 (481)
Q Consensus 315 ~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vLi~ 391 (481)
....|...+...+... .+.|+||-+.|++..+.+..+|...+ ++...+++.....+-..+-+ +|+ -.|.||
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~g---I~H~VLNAK~h~~EAeIVA~---AG~~GaVTIA 682 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRK---IPHNVLNAKLHQKEAEIVAE---AGQPGTVTIA 682 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcC---CcHHHhhccchhhHHHHHHh---cCCCCcEEEe
Confidence 3445555555544433 57799999999999999999999876 66566666544333333333 343 368999
Q ss_pred cccccccCCCC--------CCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 392 SDAMTRGMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 392 t~~l~~Gidi~--------~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
|+++++|.||. +==+||....+.|...-.|..||+||.|.+|.+-.|++-.|.
T Consensus 683 TNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 683 TNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred ccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99999999996 223788888999999999999999999999999999987664
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.55 E-value=2.1e-14 Score=106.00 Aligned_cols=81 Identities=43% Similarity=0.709 Sum_probs=74.5
Q ss_pred HHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhh
Q 011620 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (481)
Q Consensus 347 ~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~ 426 (481)
.+++.|+..+ +.+..+||+++..+|..+++.|.+++..+||+|+++++|+|+|.+++||++++|++...|.|++||+
T Consensus 2 ~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELG---IKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCC---CeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 3556666654 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 011620 427 ARAG 430 (481)
Q Consensus 427 ~R~~ 430 (481)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9975
No 156
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.54 E-value=2.9e-12 Score=120.94 Aligned_cols=262 Identities=16% Similarity=0.158 Sum_probs=179.7
Q ss_pred CCcEEEeCChhHHHhhhcC----CC-cccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCcccccccccccccc-ccc
Q 011620 172 AVDILVATPGRLMDHINAT----RG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS-AFG 245 (481)
Q Consensus 172 ~~~I~v~T~~~l~~~l~~~----~~-~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~ 245 (481)
.+||+|++|=-|...+... .. -.++++.++|+|.+|.+....| +.+..+++.++..+............. ++.
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 6899999999998888741 12 2388899999999998877766 456677777766655433333222222 222
Q ss_pred cchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCce---eeecCCc----cccCCcccccceecccCC-
Q 011620 246 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPL---FLTTGET----RYKLPERLESYKLICESK- 317 (481)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~- 317 (481)
... ..-.|++++|+...+....+....+.+.. .+..... ...+...+.+.+...+..
T Consensus 210 g~a---------------~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 210 GQA---------------KYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred Ccc---------------hheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 111 12348999999988777766555343321 1111111 112233344444432211
Q ss_pred ------CcHHH----HHHHHH-hcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCc
Q 011620 318 ------LKPLY----LVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386 (481)
Q Consensus 318 ------~k~~~----l~~~l~-~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 386 (481)
.+..+ ++..+. ....+++|||+||+-.--++.++|++.. .....++...+..+.......|..|+.
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~---~sF~~i~EYts~~~isRAR~~F~~G~~ 351 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKEN---ISFVQISEYTSNSDISRARSQFFHGRK 351 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcC---CeEEEecccCCHHHHHHHHHHHHcCCc
Confidence 12222 222233 4456789999999999999999998655 788888988999999999999999999
Q ss_pred eEEEeccccc--ccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCC------CCcEEEEEeCCcchhhhhhcc
Q 011620 387 QVLVSSDAMT--RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ------LGRCFTLLHKDEVCLVGCLTP 452 (481)
Q Consensus 387 ~vLi~t~~l~--~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~------~g~~i~~~~~~~~~~~~~i~~ 452 (481)
++|+.|..+- +-..+.++++||+|++|..+.-|...++....... ...|.++++..|.-.++.|+-
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 9999998655 56788999999999999999988888765554332 578999999999888887764
No 157
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.53 E-value=8.7e-14 Score=127.36 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=66.0
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc--CCccEEEEcccHHHHHHHHHHHHH
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
|.| .|||.|.+.+..+.+.+..+..+++++|||+|||++++.+++.++..... .+.+++|+++|..+.+|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 456 56999999999888888888999999999999999999999887765433 234799999999999998877776
Q ss_pred hc
Q 011620 124 IA 125 (481)
Q Consensus 124 ~~ 125 (481)
..
T Consensus 84 ~~ 85 (289)
T smart00488 84 LM 85 (289)
T ss_pred cc
Confidence 53
No 158
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.53 E-value=8.7e-14 Score=127.36 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=66.0
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc--CCccEEEEcccHHHHHHHHHHHHH
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
|.| .|||.|.+.+..+.+.+..+..+++++|||+|||++++.+++.++..... .+.+++|+++|..+.+|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 456 56999999999888888888999999999999999999999887765433 234799999999999998877776
Q ss_pred hc
Q 011620 124 IA 125 (481)
Q Consensus 124 ~~ 125 (481)
..
T Consensus 84 ~~ 85 (289)
T smart00489 84 LM 85 (289)
T ss_pred cc
Confidence 53
No 159
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.52 E-value=1.4e-12 Score=132.94 Aligned_cols=354 Identities=18% Similarity=0.144 Sum_probs=196.2
Q ss_pred CchhhHHHHHhhhCCCCC--CCC--EEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011620 51 LFPVQVAVWQETIGPGLF--ERD--LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~--~~~--~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (481)
-..+|-+|++.+..--.+ .+. ++--|.||+|||++=.- |+..+. ....|.|..|..-.+.|.-|.-..+++-..
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLs-d~~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALR-DDKQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhC-CCCCCceEEEEccccceeccchHHHHHhcC
Confidence 345898888865531111 122 34478999999997433 444443 335678999999999999999999988765
Q ss_pred ccCceEEEeecCCchHHHHHHhhhc-------CccccCc---------------cCCchhHHHhhc--------cCCcEE
Q 011620 127 AVGLSVGLAVGQSSIADEISELIKR-------PKLEAGI---------------CYDPEDVLQELQ--------SAVDIL 176 (481)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~---------------~~~~~~~~~~~~--------~~~~I~ 176 (481)
-.+-...++.|+....+........ ++-+... ......+...+. -...|+
T Consensus 487 L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~ 566 (1110)
T TIGR02562 487 LSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVL 566 (1110)
T ss_pred CCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeE
Confidence 5556778888877654433211110 1100000 000111111111 136799
Q ss_pred EeCChhHHHhhhcC--CCcccC----CccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhh
Q 011620 177 VATPGRLMDHINAT--RGFTLE----HLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250 (481)
Q Consensus 177 v~T~~~l~~~l~~~--~~~~~~----~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
|||++.++...... +...+. .-+.|||||+|.+ +......+..++.....
T Consensus 567 V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~~----------------------- 622 (1110)
T TIGR02562 567 VCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAGL----------------------- 622 (1110)
T ss_pred EecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHHH-----------------------
Confidence 99999998877321 111111 1357999999975 55555556666664432
Q ss_pred hhccccccCCCCCCcceeeEEEeEEEecCcccccc-cc----------cC---Cceee-ecCCcccc-------------
Q 011620 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LD----------LH---HPLFL-TTGETRYK------------- 302 (481)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~-~~----------~~---~~~~~-~~~~~~~~------------- 302 (481)
.+.+++++|||+++....... .+ .. .+..+ ..-...+.
T Consensus 623 --------------lG~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~ 688 (1110)
T TIGR02562 623 --------------LGSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFI 688 (1110)
T ss_pred --------------cCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHH
Confidence 223789999998865332111 01 00 01100 00000000
Q ss_pred -------------CCccccc---ceecccCCC-----cHHHHHHHHHhc------------C-CCc----EEEEcCCchh
Q 011620 303 -------------LPERLES---YKLICESKL-----KPLYLVALLQSL------------G-EEK----CIVFTSSVES 344 (481)
Q Consensus 303 -------------~~~~~~~---~~~~~~~~~-----k~~~l~~~l~~~------------~-~~~----~lVf~~s~~~ 344 (481)
+...... ....++... ....+...+.+. + .++ ++|-+++++.
T Consensus 689 ~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p 768 (1110)
T TIGR02562 689 QRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDP 768 (1110)
T ss_pred HHHHHHHHHHHHHHhcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchH
Confidence 0000000 001111110 111122222111 1 222 5777888888
Q ss_pred HHHHHHHHhhcC---CcceEEEEccCccChHHHHHHHHHH----------------------hc----CCceEEEecccc
Q 011620 345 THRLCTLLNHFG---ELRIKIKEYSGLQRQSVRSKTLKAF----------------------RE----GKIQVLVSSDAM 395 (481)
Q Consensus 345 ~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~r~~~~~~f----------------------~~----g~~~vLi~t~~l 395 (481)
+-.++..|-... +..+.+..+|+...-..|..+.++. ++ +...|+|+|++.
T Consensus 769 ~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~ 848 (1110)
T TIGR02562 769 LIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVE 848 (1110)
T ss_pred HHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeE
Confidence 877777775442 1235577889998877777666553 11 356789999999
Q ss_pred cccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCC--CcEEEEEeCCcchhh
Q 011620 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVCLV 447 (481)
Q Consensus 396 ~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~--g~~i~~~~~~~~~~~ 447 (481)
+.|+|+. .+.+| .-|.+...++|++||+.|.+.. +..-+++-..|.+.+
T Consensus 849 E~g~D~d-fd~~~--~~~~~~~sliQ~aGR~~R~~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 849 EVGRDHD-YDWAI--ADPSSMRSIIQLAGRVNRHRLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred EEEeccc-CCeee--eccCcHHHHHHHhhcccccccCCCCCCcEEEeHhHHHHh
Confidence 9999983 55554 3477799999999999997642 233444445555555
No 160
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.52 E-value=1.4e-13 Score=138.49 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=78.7
Q ss_pred EEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcC
Q 011620 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152 (481)
Q Consensus 73 iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 152 (481)
++.+.+|||||.+|+-.+...+.. |..+||++|...|..|+.+.++.... +-.+..++++....+....+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~----Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w---- 233 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA----GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW---- 233 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc----CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH----
Confidence 444446999999999877776654 34699999999999999999987753 25688899988877764433
Q ss_pred ccccCccCCchhHHHhhcc-CCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh
Q 011620 153 KLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~-~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~ 208 (481)
..+.. ..+|+|+|- +.-...+.++++||+||-|.
T Consensus 234 --------------~~~~~G~~~IViGtR--------SAvFaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 234 --------------LAVLRGQARVVVGTR--------SAVFAPVEDLGLVAIWDDGD 268 (665)
T ss_pred --------------HHHhCCCCcEEEEcc--------eeEEeccCCCCEEEEEcCCc
Confidence 33444 489999993 22234688899999999995
No 161
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.51 E-value=7.8e-13 Score=139.05 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=80.3
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHh
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 148 (481)
++..+|+..+|||||++.+..+-..+.. ...+.++||+-++.|-.|..+.+..+........ ......+...
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-----~~~s~~~Lk~- 344 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-----KAESTSELKE- 344 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-----cccCHHHHHH-
Confidence 4679999999999999977755443333 5567899999999999999999998865432211 1111112111
Q ss_pred hhcCccccCccCCchhHHHhhccC-CcEEEeCChhHHHhhhcCCCc-ccCCccEEEEecchhhhhHhHHhHH
Q 011620 149 IKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWL 218 (481)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~-~~I~v~T~~~l~~~l~~~~~~-~~~~~~~iViDE~H~~~~~~~~~~~ 218 (481)
.+... ..|+|||.++|.......... .-..--++|+||||+--....+..+
T Consensus 345 -------------------~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~ 397 (962)
T COG0610 345 -------------------LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLL 397 (962)
T ss_pred -------------------HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHHH
Confidence 22222 389999999998877653111 1122237999999975444333333
No 162
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.38 E-value=9.8e-12 Score=133.97 Aligned_cols=132 Identities=19% Similarity=0.163 Sum_probs=107.4
Q ss_pred CcHHHHHHHH-H--hcCCC--cEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcC--CceEEE
Q 011620 318 LKPLYLVALL-Q--SLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLV 390 (481)
Q Consensus 318 ~k~~~l~~~l-~--~~~~~--~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vLi 390 (481)
.|...+..++ . ...+. ++++|++.......+...+...+ +....++|.++...|...++.|.++ ..-+++
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~---~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~ll 768 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALG---IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLL 768 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcC---CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEE
Confidence 4566666666 2 22344 89999999999999999998876 6889999999999999999999986 344567
Q ss_pred ecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcc
Q 011620 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTP 452 (481)
Q Consensus 391 ~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~ 452 (481)
++...+.|+++...++||++|..|++....|...|+.|.|+...+.++-.......-+.+.+
T Consensus 769 s~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~ 830 (866)
T COG0553 769 SLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILE 830 (866)
T ss_pred EecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHH
Confidence 78899999999999999999999999999999999999998887777755544443333333
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.33 E-value=3.2e-10 Score=113.07 Aligned_cols=294 Identities=17% Similarity=0.191 Sum_probs=162.3
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhh
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (481)
.-.+|.+|+|||||.+.+..+.+.+. .++.++++++.++.|+.++.+.++...-. |.. .+.+......
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~---~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~~i----- 117 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK---NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDYII----- 117 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc---CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccccccc-----
Confidence 44688999999999885444433332 34557999999999999999888765221 111 1111110000
Q ss_pred hcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHH---HHHHH---
Q 011620 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWL---PTVLQ--- 223 (481)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~---~~i~~--- 223 (481)
.....+-+++..++|.+.... .+.++++||+||+-..+..-+...+ ..++.
T Consensus 118 -------------------~~~~~~rLivqIdSL~R~~~~----~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~ 174 (824)
T PF02399_consen 118 -------------------DGRPYDRLIVQIDSLHRLDGS----LLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLK 174 (824)
T ss_pred -------------------cccccCeEEEEehhhhhcccc----cccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHH
Confidence 001246778888888766422 3567899999999987665443222 22222
Q ss_pred -hcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccC-CceeeecCC---
Q 011620 224 -LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGE--- 298 (481)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~-~~~~~~~~~--- 298 (481)
...+.. .+|++-|++.+....+...... ..+.+....
T Consensus 175 ~lI~~ak--------------------------------------~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~ 216 (824)
T PF02399_consen 175 ELIRNAK--------------------------------------TVIVMDADLNDQTVDFLASCRPDENIHVIVNTYAS 216 (824)
T ss_pred HHHHhCC--------------------------------------eEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeec
Confidence 121111 3344444443322222111110 111100000
Q ss_pred -------------------------c--c----ccCCcccccceecccCCCcHHHHHHHHHhc-CCCcEEEEcCCchhHH
Q 011620 299 -------------------------T--R----YKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTH 346 (481)
Q Consensus 299 -------------------------~--~----~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~ 346 (481)
. . .........................++... .++++-||+++...++
T Consensus 217 ~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~ 296 (824)
T PF02399_consen 217 PGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLNAGKNICVFSSTVSFAE 296 (824)
T ss_pred CCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHhCCCcEEEEeChHHHHH
Confidence 0 0 000000000000000122223333444433 3567778999999999
Q ss_pred HHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCC--CEEEEecCC----CChhhHH
Q 011620 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV--NNVVNYDKP----AYIKTYI 420 (481)
Q Consensus 347 ~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~--~~vI~~~~p----~s~~~~~ 420 (481)
.+++..+... .++..+++..+.. ++ +.| ++.+|++-|+.+..|+++-.. +-++.|=.| .++....
T Consensus 297 ~v~~~~~~~~---~~Vl~l~s~~~~~---dv-~~W--~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~ 367 (824)
T PF02399_consen 297 IVARFCARFT---KKVLVLNSTDKLE---DV-ESW--KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVY 367 (824)
T ss_pred HHHHHHHhcC---CeEEEEcCCCCcc---cc-ccc--cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHH
Confidence 9999888775 6888888765554 22 233 568999999999999999653 334444223 2345689
Q ss_pred HHHhhhhcCCCCCcEEEEEeCCcchh
Q 011620 421 HRAGRTARAGQLGRCFTLLHKDEVCL 446 (481)
Q Consensus 421 Q~~GR~~R~~~~g~~i~~~~~~~~~~ 446 (481)
|++||+-.. .....+++++......
T Consensus 368 Q~lgRvR~l-~~~ei~v~~d~~~~~~ 392 (824)
T PF02399_consen 368 QMLGRVRSL-LDNEIYVYIDASGARS 392 (824)
T ss_pred HHHHHHHhh-ccCeEEEEEecccccC
Confidence 999997443 4678888888754443
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.33 E-value=1.9e-11 Score=95.96 Aligned_cols=105 Identities=19% Similarity=0.159 Sum_probs=66.7
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 147 (481)
+|+--++..++|+|||.-.+.-++.... .++.++|+|.||+.++..+.+.++.. ++.+ -..-.. . .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i---~~~~rvLvL~PTRvva~em~~aL~~~----~~~~--~t~~~~-~-~--- 68 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI---KRRLRVLVLAPTRVVAEEMYEALKGL----PVRF--HTNARM-R-T--- 68 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH---HTT--EEEEESSHHHHHHHHHHTTTS----SEEE--ESTTSS-------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH---HccCeEEEecccHHHHHHHHHHHhcC----Cccc--Cceeee-c-c---
Confidence 3566788999999999976665555443 34568999999999999888887633 2222 111110 0 0
Q ss_pred hhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhh
Q 011620 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~ 209 (481)
...+.-|-|+|+..+.+.+.. + ....++++||+||||-.
T Consensus 69 ---------------------~~g~~~i~vMc~at~~~~~~~-p-~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 69 ---------------------HFGSSIIDVMCHATYGHFLLN-P-CRLKNYDVIIMDECHFT 107 (148)
T ss_dssp -----------------------SSSSEEEEEHHHHHHHHHT-S-SCTTS-SEEEECTTT--
T ss_pred ---------------------ccCCCcccccccHHHHHHhcC-c-ccccCccEEEEeccccC
Confidence 113346889999999887766 2 33678999999999953
No 165
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.31 E-value=1.2e-10 Score=115.51 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=100.2
Q ss_pred HHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcC---C----------------cceEEEEccCccChHHHHHHH
Q 011620 320 PLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFG---E----------------LRIKIKEYSGLQRQSVRSKTL 378 (481)
Q Consensus 320 ~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~---~----------------~~~~~~~~~~~~~~~~r~~~~ 378 (481)
.-.|+++|+.. -+.++|||..|....+.+..+|.... . .+.....+.|......|+...
T Consensus 1128 miLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~ 1207 (1567)
T KOG1015|consen 1128 MILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWA 1207 (1567)
T ss_pred eehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHH
Confidence 33555666533 46799999999999999999887521 1 123467788999999999999
Q ss_pred HHHhcC---Cce-EEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCc
Q 011620 379 KAFREG---KIQ-VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (481)
Q Consensus 379 ~~f~~g---~~~-vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 443 (481)
++|.+- ..+ .||+|.+.+-|||+-.++.||++|..|++.-=.|.+=|+.|.|+...|++|-....
T Consensus 1208 ~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAq 1276 (1567)
T KOG1015|consen 1208 EEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQ 1276 (1567)
T ss_pred HHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhc
Confidence 999853 222 58999999999999999999999999999999999999999999999988854433
No 166
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=99.28 E-value=6.4e-09 Score=100.54 Aligned_cols=110 Identities=17% Similarity=0.181 Sum_probs=75.7
Q ss_pred cCCCcEEEEcCCchhHHHHHHHHhhcCC----cceEEEEccCccChHHHHHHHHHHh----cCCceEEEe--cccccccC
Q 011620 330 LGEEKCIVFTSSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFR----EGKIQVLVS--SDAMTRGM 399 (481)
Q Consensus 330 ~~~~~~lVf~~s~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vLi~--t~~l~~Gi 399 (481)
.-++.+++|+||.+....+.+...+.|. .+.+.+++-...+ -.++++.++ .|.-.+|++ -.-+++||
T Consensus 627 ~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGI 703 (821)
T KOG1133|consen 627 AVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGI 703 (821)
T ss_pred hCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccc
Confidence 3468999999999999999998876542 1123333333222 345555555 355456655 47899999
Q ss_pred CCCC--CCEEEEecCCCC--------------------------------hhhHHHHHhhhhcCCCCCcEEEEEeCC
Q 011620 400 DVEG--VNNVVNYDKPAY--------------------------------IKTYIHRAGRTARAGQLGRCFTLLHKD 442 (481)
Q Consensus 400 di~~--~~~vI~~~~p~s--------------------------------~~~~~Q~~GR~~R~~~~g~~i~~~~~~ 442 (481)
|+.+ +++||..++|.. +...-|.+|||.|+.++..+++++|..
T Consensus 704 NF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R 780 (821)
T KOG1133|consen 704 NFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKR 780 (821)
T ss_pred ccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhh
Confidence 9986 888999887732 112249999999998888888888753
No 167
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.24 E-value=2.1e-11 Score=114.20 Aligned_cols=130 Identities=21% Similarity=0.171 Sum_probs=80.8
Q ss_pred hhHHHHHhhhCCC---------CCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCC--ccEEEEcccHHHHHHHHHHHH
Q 011620 54 VQVAVWQETIGPG---------LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC--LRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 54 ~Q~~a~~~~~~~~---------~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~--~~~lil~P~~~L~~q~~~~~~ 122 (481)
||.+++..++... ...+.+++...+|+|||.+++..+. .+....... ..+||+||. .+..||..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 4666666554432 3457799999999999999776554 333321111 149999999 88899999999
Q ss_pred HhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHH-----HhhhcCCCcccCC
Q 011620 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-----DHINATRGFTLEH 197 (481)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~-----~~l~~~~~~~~~~ 197 (481)
+++.....++..+.+........ .......+++|+|++.+. ..... +..-+
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~ 134 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLS---------------------KNQLPKYDVVITTYETLRKARKKKDKED---LKQIK 134 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTT---------------------SSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSE
T ss_pred ccccccccccccccccccccccc---------------------ccccccceeeeccccccccccccccccc---ccccc
Confidence 99865567788777766111110 012244689999999998 21111 22234
Q ss_pred ccEEEEecchhh
Q 011620 198 LCYLVVDETDRL 209 (481)
Q Consensus 198 ~~~iViDE~H~~ 209 (481)
+++||+||+|.+
T Consensus 135 ~~~vIvDEaH~~ 146 (299)
T PF00176_consen 135 WDRVIVDEAHRL 146 (299)
T ss_dssp EEEEEETTGGGG
T ss_pred ceeEEEeccccc
Confidence 899999999987
No 168
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=7.6e-10 Score=103.44 Aligned_cols=379 Identities=16% Similarity=0.195 Sum_probs=211.2
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEE-ECCCCchH--HHHhHHHHHHHHHhhc---------------------------
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCI-NSPTGSGK--TLSYALPIVQTLSNRA--------------------------- 98 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv-~~~tGsGK--T~~~~~~i~~~l~~~~--------------------------- 98 (481)
..+++.|.+.+..+.+ -+|++. .+..+.|+ +..|++.+++++.+..
T Consensus 215 ~pltalQ~~L~~~m~~----YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG 290 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFN----YRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQG 290 (698)
T ss_pred CcchHHHHHHHHHHHh----hhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcC
Confidence 4789999988776554 577654 33344565 5567777777763321
Q ss_pred cCCccEEEEcccHHHHHHHHHHHHHhccccCc-eE--------EEeecC--------CchHHHHHHhhhcCccccCccCC
Q 011620 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGL-SV--------GLAVGQ--------SSIADEISELIKRPKLEAGICYD 161 (481)
Q Consensus 99 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~-~v--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 161 (481)
-..|+|||+||+++-|-.+.+.+..++...+- +. ..-+++ ....++...+.. +.....+..+
T Consensus 291 ~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~-GNtDD~FriG 369 (698)
T KOG2340|consen 291 FTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFS-GNTDDAFRIG 369 (698)
T ss_pred CCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhc-CCCcchhhhh
Confidence 13478999999999999988888877433221 00 000110 000001000000 0000000000
Q ss_pred ch---hHHHh--hccCCcEEEeCChhHHHhhhcCC----Cc-ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccc
Q 011620 162 PE---DVLQE--LQSAVDILVATPGRLMDHINATR----GF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNEN 231 (481)
Q Consensus 162 ~~---~~~~~--~~~~~~I~v~T~~~l~~~l~~~~----~~-~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~ 231 (481)
-. ..... --...+|+||+|=-|...+...+ .+ .++++.++|||.+|.++...|. .+..++..+...+..
T Consensus 370 l~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k 448 (698)
T KOG2340|consen 370 LAFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSK 448 (698)
T ss_pred HHHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCccc
Confidence 00 00011 11368999999999988886322 12 3788999999999998877764 455666666555544
Q ss_pred ccccccccc-ccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCc---eee----ec---CCcc
Q 011620 232 RFSDASTFL-PSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP---LFL----TT---GETR 300 (481)
Q Consensus 232 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~---~~~----~~---~~~~ 300 (481)
......... +-+++...... .|++++|+-..+....+....+.+. +.. .. ....
T Consensus 449 ~h~~DfSRVR~wyL~~qsr~~---------------rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~ 513 (698)
T KOG2340|consen 449 QHDVDFSRVRMWYLDGQSRYF---------------RQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVG 513 (698)
T ss_pred ccCCChhheehheeccHHHHH---------------HHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhcc
Confidence 333332222 22222222222 2566666554433332222111111 110 00 0111
Q ss_pred ccCCcccccce---ecccCCCcHHHHH-HHH---HhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHH
Q 011620 301 YKLPERLESYK---LICESKLKPLYLV-ALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373 (481)
Q Consensus 301 ~~~~~~~~~~~---~~~~~~~k~~~l~-~~l---~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 373 (481)
..+........ .......+-.+.. .++ .......+||+.||+-.--++..++++.. +....++...+...
T Consensus 514 ~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~---i~F~~i~EYssk~~ 590 (698)
T KOG2340|consen 514 IPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEE---ISFVMINEYSSKSK 590 (698)
T ss_pred chhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhh---cchHHHhhhhhHhh
Confidence 11111111111 0111112222211 111 22234578999999999999999998765 55566666666666
Q ss_pred HHHHHHHHhcCCceEEEeccccc--ccCCCCCCCEEEEecCCCChhhH---HHHHhhhhcCC----CCCcEEEEEeCCcc
Q 011620 374 RSKTLKAFREGKIQVLVSSDAMT--RGMDVEGVNNVVNYDKPAYIKTY---IHRAGRTARAG----QLGRCFTLLHKDEV 444 (481)
Q Consensus 374 r~~~~~~f~~g~~~vLi~t~~l~--~Gidi~~~~~vI~~~~p~s~~~~---~Q~~GR~~R~~----~~g~~i~~~~~~~~ 444 (481)
-...-+-|-.|+..||+-|..+. +-.++.++..||+|.+|..+.-| +.+.+|+.-.| ..-.|.+++++.|.
T Consensus 591 vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 591 VSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred hhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhh
Confidence 67777889999999999998665 56899999999999999998755 55566654433 22478888888887
Q ss_pred hhhhhhc
Q 011620 445 CLVGCLT 451 (481)
Q Consensus 445 ~~~~~i~ 451 (481)
-.+..++
T Consensus 671 i~Le~iv 677 (698)
T KOG2340|consen 671 IRLENIV 677 (698)
T ss_pred HHHHHhh
Confidence 6666554
No 169
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.18 E-value=3e-10 Score=113.96 Aligned_cols=127 Identities=26% Similarity=0.273 Sum_probs=88.4
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
.++..|. +..+.-+..-+..+-||-|||+++.+|+.-.... |..+.+++-+.-|+..-++++.++...+|
T Consensus 80 ~~~dVQl------iG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~----gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 80 RHFDVQL------LGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA----GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred ChhhHHH------hhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC----CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 4555663 3333336677999999999999998887433222 23599999999999998999999999999
Q ss_pred ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-----HHhhhc-CCCcccCCccEEEE
Q 011620 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-----MDHINA-TRGFTLEHLCYLVV 203 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-----~~~l~~-~~~~~~~~~~~iVi 203 (481)
+++++...+....+.-.. ..++|..+|..-| ...+.. ........+.+.|+
T Consensus 150 lsvG~~~~~m~~~ek~~a-----------------------Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIv 206 (822)
T COG0653 150 LSVGVILAGMSPEEKRAA-----------------------YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIV 206 (822)
T ss_pred CceeeccCCCChHHHHHH-----------------------HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEE
Confidence 999999988866554332 3458999986544 222211 11122445778899
Q ss_pred ecchhh
Q 011620 204 DETDRL 209 (481)
Q Consensus 204 DE~H~~ 209 (481)
||++.+
T Consensus 207 DEvDSI 212 (822)
T COG0653 207 DEVDSI 212 (822)
T ss_pred cchhhe
Confidence 998853
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.97 E-value=1.4e-08 Score=90.39 Aligned_cols=131 Identities=24% Similarity=0.251 Sum_probs=92.5
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.|+ .|++.|.-+.-.+. +.-++++.||-|||+++.+++.-.... |..|-|+|.+..|+..-++++..+.
T Consensus 74 ~g~-~p~~vQll~~l~L~------~G~laEm~TGEGKTli~~l~a~~~AL~----G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALH------KGRLAEMKTGEGKTLIAALPAALNALQ----GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp TS-----HHHHHHHHHHH------TTSEEEESTTSHHHHHHHHHHHHHHTT----SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcc------cceeEEecCCCCcHHHHHHHHHHHHHh----cCCcEEEeccHHHhhccHHHHHHHH
Confidence 454 89999988875543 334999999999999988877655544 3469999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHh-hh----cCCCc-ccCCcc
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH-IN----ATRGF-TLEHLC 199 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~-l~----~~~~~-~~~~~~ 199 (481)
..+|+.+....++......... ..++|+.+|...+.-. +. ..... ....++
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~-----------------------Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~ 199 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREA-----------------------YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFD 199 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHH-----------------------HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSS
T ss_pred HHhhhccccCccccCHHHHHHH-----------------------HhCcccccccchhhHHHHHHHHhhccchhccCCCC
Confidence 9999999999998775443222 2348999998877532 21 11111 146788
Q ss_pred EEEEecchhhh
Q 011620 200 YLVVDETDRLL 210 (481)
Q Consensus 200 ~iViDE~H~~~ 210 (481)
++||||+|.++
T Consensus 200 ~~ivDEvDs~L 210 (266)
T PF07517_consen 200 FAIVDEVDSIL 210 (266)
T ss_dssp EEEECTHHHHT
T ss_pred EEEEeccceEE
Confidence 99999999763
No 171
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.96 E-value=1.3e-07 Score=88.76 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=58.1
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
|.|...+|.|.+=+.++-..+-.+...++++|+|+|||.+.+-.++.+....+....++++-.-|..-.+....+++.
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 467788999988887776666667889999999999999977777766665555555778877776655555555544
No 172
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.89 E-value=3.3e-09 Score=89.16 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=74.2
Q ss_pred cCCCcEEEEcCCchhHHHHHHHHhhcCC-cceEEEEccCccChHHHHHHHHHHhcCCceEEEecc--cccccCCCCC--C
Q 011620 330 LGEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD--AMTRGMDVEG--V 404 (481)
Q Consensus 330 ~~~~~~lVf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~--~l~~Gidi~~--~ 404 (481)
..++++|||++|....+.+.+.+.+... .+..+.. . +..++...++.|++++..||+++. .+++|||+|+ +
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~-q---~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV-Q---GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE-S---TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeee-c---CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchh
Confidence 3468999999999999999999976531 1122222 2 355688999999999999999998 9999999996 8
Q ss_pred CEEEEecCCCC-h-----------------------------hhHHHHHhhhhcCCCCCcEEEEEeC
Q 011620 405 NNVVNYDKPAY-I-----------------------------KTYIHRAGRTARAGQLGRCFTLLHK 441 (481)
Q Consensus 405 ~~vI~~~~p~s-~-----------------------------~~~~Q~~GR~~R~~~~g~~i~~~~~ 441 (481)
+.||+.+.|.. + ....|.+||+.|...+..+++++|.
T Consensus 83 r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 83 RAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred heeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 88999988732 1 2335889999998766556666554
No 173
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.77 E-value=1.6e-08 Score=91.01 Aligned_cols=70 Identities=27% Similarity=0.298 Sum_probs=49.6
Q ss_pred CCchhhHHHHHhhhCCCCCCCC-EEEECCCCchHHHHhHHHHHHHHH----hhccCCccEEEEcccHHHHHHHHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLS----NRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~-~iv~~~tGsGKT~~~~~~i~~~l~----~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
.+++.|.+|+..++. ... .+|.||+|||||.+....+...+. .....+.++++++|+..-++++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999998886 565 899999999999775543333311 1234566899999999999998888877
No 174
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.75 E-value=5.8e-08 Score=96.48 Aligned_cols=114 Identities=20% Similarity=0.321 Sum_probs=85.2
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCC----cceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEE
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~v 407 (481)
.+-++||.+-....-.|+..+..... ....+...|+-....+...+.+.-..|..++++.|.+.+..+.+-++..|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 45789999999888888888765431 22456677887777777777766667889999999999998888776666
Q ss_pred EEecCC------------------CChhhHHHHHhhhhcCCCCCcEEEEEeCCcchh
Q 011620 408 VNYDKP------------------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCL 446 (481)
Q Consensus 408 I~~~~p------------------~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~ 446 (481)
|+.+.. .|.....||.||++|. ++|.|..+++....+.
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~arF~~ 778 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRARFEA 778 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHHHHHH
Confidence 654321 3456789999999997 6889988887644433
No 175
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.75 E-value=1.1e-07 Score=98.13 Aligned_cols=72 Identities=19% Similarity=0.192 Sum_probs=52.6
Q ss_pred CceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcC--CCCC--------cEEEEEeCCcchhhhhhcccc
Q 011620 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA--GQLG--------RCFTLLHKDEVCLVGCLTPLL 454 (481)
Q Consensus 385 ~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~--~~~g--------~~i~~~~~~~~~~~~~i~~~~ 454 (481)
..+.|++.+++.+|-|.|++=.+..+....|...-.|.+||+.|. ++.| .-.++++.+.......|.+-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 567899999999999999988888888888888999999999982 1112 233445555555555555554
Q ss_pred cc
Q 011620 455 LC 456 (481)
Q Consensus 455 ~~ 456 (481)
..
T Consensus 581 ~~ 582 (986)
T PRK15483 581 NS 582 (986)
T ss_pred Hh
Confidence 33
No 176
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.68 E-value=8.7e-08 Score=95.52 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=105.9
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc-----------c---------------
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----------V--------------- 99 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~-----------~--------------- 99 (481)
|.| +||+.|...+..++..+....+.+++.|||+|||++.+...+.+....+ .
T Consensus 18 fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 455 8999999999999988878889999999999999998887776653321 0
Q ss_pred ------------CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchH---------------HHHHHhhhcC
Q 011620 100 ------------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIA---------------DEISELIKRP 152 (481)
Q Consensus 100 ------------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~---------------~~~~~~~~~~ 152 (481)
.-++++|.+-|.....|+.+++++..-. .+..++.+..... ..+.+.....
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~ 174 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSR 174 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccc
Confidence 1357888889998899999999887543 4444444433221 1111111111
Q ss_pred ccccC----------------------------ccCCchhHHHhhccCCcEEEeCChhHHHhhhcCC-CcccCCccEEEE
Q 011620 153 KLEAG----------------------------ICYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVV 203 (481)
Q Consensus 153 ~~~~~----------------------------~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~-~~~~~~~~~iVi 203 (481)
..... ....|-...+.+.+.++|++|-|..|.+-..+.. .+++.+ ..|||
T Consensus 175 ~C~f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIf 253 (945)
T KOG1132|consen 175 SCHFYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIF 253 (945)
T ss_pred cccccccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEE
Confidence 11000 0122223335667789999999999988765532 234433 48999
Q ss_pred ecchhh
Q 011620 204 DETDRL 209 (481)
Q Consensus 204 DE~H~~ 209 (481)
||||.+
T Consensus 254 DEAHNi 259 (945)
T KOG1132|consen 254 DEAHNI 259 (945)
T ss_pred eccccH
Confidence 999975
No 177
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.53 E-value=2.4e-08 Score=100.95 Aligned_cols=132 Identities=20% Similarity=0.273 Sum_probs=97.6
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
.+.|.|...+.... -...++++-+|||+|||..|.+++...+... ++.++++++|-++|+..-..++.+....-|
T Consensus 927 ~fn~~q~~if~~~y---~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~--p~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLY---HTDLNFLLGAPTGSGKTVVAELAIFRALSYY--PGSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred ccCCccceEEEEEe---ecchhhhhcCCccCcchhHHHHHHHHHhccC--CCccEEEEcCCchhhcccccchhhhcccCC
Confidence 45556655433322 2346789999999999999998877666654 446899999999999987777766554448
Q ss_pred ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc-ccCCccEEEEecchh
Q 011620 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDR 208 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~-~~~~~~~iViDE~H~ 208 (481)
+++..+.|+...+-. .-..++++|+||+++-....+++.. .+.+++.+|+||.|.
T Consensus 1002 ~k~ie~tgd~~pd~~------------------------~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hl 1057 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPDVK------------------------AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHL 1057 (1230)
T ss_pred ceeEeccCccCCChh------------------------heecCceEEcccccccCccccccchhhhccccceeeccccc
Confidence 999999988765522 1145699999999998777654432 377899999999997
Q ss_pred hh
Q 011620 209 LL 210 (481)
Q Consensus 209 ~~ 210 (481)
+.
T Consensus 1058 lg 1059 (1230)
T KOG0952|consen 1058 LG 1059 (1230)
T ss_pred cc
Confidence 63
No 178
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.43 E-value=2.3e-06 Score=82.91 Aligned_cols=85 Identities=22% Similarity=0.238 Sum_probs=66.3
Q ss_pred HHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 011620 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 43 l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (481)
+...++..++.-|..|..+++. ..-.++.+|+|||||.+..- |..++... ....+|+.+|+..-++|+++.+.
T Consensus 403 ~s~~~lpkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~-IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 403 FSVPNLPKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred hcCCCchhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHH-HHHHHHHh--cCCceEEEcccchhHHHHHHHHH
Confidence 3456888999999999999986 66689999999999998665 44444333 23359999999999999999998
Q ss_pred HhccccCceEEEeecC
Q 011620 123 AIAPAVGLSVGLAVGQ 138 (481)
Q Consensus 123 ~~~~~~~~~v~~~~~~ 138 (481)
+. |++|.-+.+.
T Consensus 476 ~t----gLKVvRl~ak 487 (935)
T KOG1802|consen 476 KT----GLKVVRLCAK 487 (935)
T ss_pred hc----CceEeeeehh
Confidence 76 6777666543
No 179
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.35 E-value=4.2e-05 Score=75.58 Aligned_cols=119 Identities=18% Similarity=0.194 Sum_probs=94.2
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcC---Cc------------ceEEEEccCccChHHHHHHHHHHhcC-C--ceEEEecc
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFG---EL------------RIKIKEYSGLQRQSVRSKTLKAFREG-K--IQVLVSSD 393 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~---~~------------~~~~~~~~~~~~~~~r~~~~~~f~~g-~--~~vLi~t~ 393 (481)
+.++|||..+....+.+...+.+.. .. +.....+.|..+..+|+..+++|... . .-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 3588999999888888888887642 11 12345678888889999999999863 2 24678899
Q ss_pred cccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhh
Q 011620 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCL 450 (481)
Q Consensus 394 ~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i 450 (481)
...-||++-+.+.+|+++.-|++.--.|.+.|+.|.|+...|++|-.--|...=++|
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkI 855 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKI 855 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHH
Confidence 999999998888888899999999999999999999999999998766555444433
No 180
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.32 E-value=1.2e-05 Score=80.36 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=58.7
Q ss_pred CCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhc--CCCCC-----------cEEEEEeCCcchhhhhh
Q 011620 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR--AGQLG-----------RCFTLLHKDEVCLVGCL 450 (481)
Q Consensus 384 g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R--~~~~g-----------~~i~~~~~~~~~~~~~i 450 (481)
...+.|++-.+|-+|-|-|++=.+.-+....|...=.|.+||+.| .+..| .-.++++......+..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 347899999999999999998888888888889999999999999 23333 23456666777777777
Q ss_pred cccccchhhh
Q 011620 451 TPLLLCTSDI 460 (481)
Q Consensus 451 ~~~~~~~~~~ 460 (481)
.+-+...+.+
T Consensus 562 qkEI~~~s~i 571 (985)
T COG3587 562 QKEINDESFI 571 (985)
T ss_pred HHHHHHhhhh
Confidence 6666555543
No 181
>PF13245 AAA_19: Part of AAA domain
Probab=98.27 E-value=4.4e-06 Score=59.41 Aligned_cols=53 Identities=32% Similarity=0.454 Sum_probs=40.4
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~ 121 (481)
++-++|.+|+|||||.+.+-.+...+......+.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34466699999999988777666666432222557999999999999888877
No 182
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.25 E-value=5.2e-06 Score=67.09 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=54.6
Q ss_pred cChHHHHHHHHHHhcCC-ceEEEecccccccCCCCC--CCEEEEecCCCC------------------------------
Q 011620 369 QRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEG--VNNVVNYDKPAY------------------------------ 415 (481)
Q Consensus 369 ~~~~~r~~~~~~f~~g~-~~vLi~t~~l~~Gidi~~--~~~vI~~~~p~s------------------------------ 415 (481)
.+..+...+++.|++.. ..||+++..+++|+|+|+ +++||+.+.|..
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPD 110 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHH
Confidence 44445788999998754 379999988999999997 778999887621
Q ss_pred -hhhHHHHHhhhhcCCCCCcEEEEEeC
Q 011620 416 -IKTYIHRAGRTARAGQLGRCFTLLHK 441 (481)
Q Consensus 416 -~~~~~Q~~GR~~R~~~~g~~i~~~~~ 441 (481)
...+.|.+||+.|...+..++++++.
T Consensus 111 a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 111 AMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHhCccccCcCceEEEEEEec
Confidence 12345889999998766556666654
No 183
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.25 E-value=1.8e-06 Score=73.85 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=40.6
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
...+..|..+++.+.+ .+-+++.||.|||||+.++..+++.+..+. -.+++++-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~--~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGE--YDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS---SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCC--CcEEEEEecCCCC
Confidence 3567889999988874 677899999999999999999998887743 2268888787653
No 184
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.20 E-value=4e-06 Score=72.52 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=44.7
Q ss_pred CCchhhHHHHHhhhCCCCCC-CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~-~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~ 120 (481)
+|++-|.+|+..++. .+ +-.+|.|+.|+|||++. ..+...+.. .+.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~---~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILT---SGDRVSVLQGPAGTGKTTLL-KALAEALEA---AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHH---CTCSEEEEEESTTSTHHHHH-HHHHHHHHH---TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---cCCeEEEEEECCCCCHHHHH-HHHHHHHHh---CCCeEEEECCcHHHHHHHHHh
Confidence 478899999999874 13 34778999999999863 334444443 246799999999988775555
No 185
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.20 E-value=5.8e-06 Score=66.99 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=62.2
Q ss_pred hHHHHHHHHhhcCCc--ceEEEEccCccChHHHHHHHHHHhcCCc---eEEEeccc--ccccCCCCC--CCEEEEecCCC
Q 011620 344 STHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKI---QVLVSSDA--MTRGMDVEG--VNNVVNYDKPA 414 (481)
Q Consensus 344 ~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~vLi~t~~--l~~Gidi~~--~~~vI~~~~p~ 414 (481)
..+.+.+.+.+.+.. ... .+..+ ....+...+++.|++... .||+++.. +++|||+|+ +++||+.+.|.
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~-i~~e~-~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKP-VFIEG-KDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCce-EEEEC-CCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 345566666543210 122 22222 222345788888987543 68888876 999999997 78899988773
Q ss_pred C-------------------------------hhhHHHHHhhhhcCCCCCcEEEEEeC
Q 011620 415 Y-------------------------------IKTYIHRAGRTARAGQLGRCFTLLHK 441 (481)
Q Consensus 415 s-------------------------------~~~~~Q~~GR~~R~~~~g~~i~~~~~ 441 (481)
. ...+.|.+||+.|...+..++++++.
T Consensus 81 p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 81 PNPDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 2 12345889999998776667777665
No 186
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.18 E-value=1e-05 Score=81.91 Aligned_cols=102 Identities=20% Similarity=0.228 Sum_probs=87.9
Q ss_pred CcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCC-ceE-EEecccccccCCCCCCCEEEEe
Q 011620 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQV-LVSSDAMTRGMDVEGVNNVVNY 410 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~v-Li~t~~l~~Gidi~~~~~vI~~ 410 (481)
++++||+.-...+..+.-.+...+ +....+.|.++...|...+..|..+. ..+ +++......|+++..+.+|+..
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~---~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~ 616 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKG---FVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLM 616 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcc---cccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhh
Confidence 489999999999999988887555 77888999999999999999998543 334 5667888999999999999999
Q ss_pred cCCCChhhHHHHHhhhhcCCCCCcEEE
Q 011620 411 DKPAYIKTYIHRAGRTARAGQLGRCFT 437 (481)
Q Consensus 411 ~~p~s~~~~~Q~~GR~~R~~~~g~~i~ 437 (481)
++=|++..-.|.+-|++|.|+...+.+
T Consensus 617 d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 617 DPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred chhcChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999999998776655
No 187
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.17 E-value=7.4e-06 Score=78.99 Aligned_cols=66 Identities=26% Similarity=0.285 Sum_probs=52.2
Q ss_pred CCCchhhHHHHHhhhCCCCCC-CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 011620 49 SSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~-~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (481)
..+.+-|..|+....+ . .-.++.||+|||||++....+.+.+..+ .++|+.+||..-++.+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~----~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~----k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN----NKDLLIIHGPPGTGKTRTLVEIISQLVKQK----KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhc----cCCceEeeCCCCCCceeeHHHHHHHHHHcC----CeEEEEcCchHHHHHHHHHhc
Confidence 3688889998877665 4 4578999999999999777666555443 479999999999998888654
No 188
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.16 E-value=8.3e-06 Score=73.09 Aligned_cols=134 Identities=18% Similarity=0.100 Sum_probs=86.8
Q ss_pred CCchhhHHHHHhhhCCCC------CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~------~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
.+...|.+++-.+.+... ....+++--.||.||-......|++...++. .+.++++.+..|.....++++.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr---~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR---KRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC---CceEEEECChhhhhHHHHHHHH
Confidence 688899998876654321 2356889999999999998777777776642 3699999999999999999998
Q ss_pred hccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCC--ccc------
Q 011620 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG--FTL------ 195 (481)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~--~~~------ 195 (481)
+... .+.+..+..- +... ...-.-.|+++||..|......... -.+
T Consensus 114 IG~~-~i~v~~l~~~-----------~~~~--------------~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W 167 (303)
T PF13872_consen 114 IGAD-NIPVHPLNKF-----------KYGD--------------IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDW 167 (303)
T ss_pred hCCC-cccceechhh-----------ccCc--------------CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHH
Confidence 7543 3333222210 0000 0011236999999988776432110 000
Q ss_pred --CC-ccEEEEecchhhhhH
Q 011620 196 --EH-LCYLVVDETDRLLRE 212 (481)
Q Consensus 196 --~~-~~~iViDE~H~~~~~ 212 (481)
.+ =.+|||||||.....
T Consensus 168 ~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 168 CGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred HhcCCCceEEeccchhcCCC
Confidence 12 248999999987443
No 189
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.14 E-value=1.3e-05 Score=69.17 Aligned_cols=156 Identities=19% Similarity=0.269 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
-|.+++=-+. .++ -+|+.|.+...++.++ ..+++.+..+-+|.|||.+ +.|++..+..++. .-+.+++|. +|.
T Consensus 10 ~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~--~LvrviVpk-~Ll 82 (229)
T PF12340_consen 10 YPDWLLFEIE-SNI-LIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSV-IVPMLALALADGS--RLVRVIVPK-ALL 82 (229)
T ss_pred ChHHHHHHHH-cCc-eeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccch-HHHHHHHHHcCCC--cEEEEEcCH-HHH
Confidence 3444443332 243 7999999999988875 4578899999999999988 5566666655432 246666776 688
Q ss_pred HHHHHHHHHhc-cccCceEEEee--cCCchH-HHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcC
Q 011620 115 LQVKDVFAAIA-PAVGLSVGLAV--GQSSIA-DEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 190 (481)
Q Consensus 115 ~q~~~~~~~~~-~~~~~~v~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~ 190 (481)
.|....+..-. .-.+-++..+. -..... .....+ ....+.......|+++||+.+..+....
T Consensus 83 ~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~--------------~~l~~~~~~~~gill~~PEhilSf~L~~ 148 (229)
T PF12340_consen 83 EQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKI--------------RQLLEECMRSGGILLATPEHILSFKLKG 148 (229)
T ss_pred HHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHH--------------HHHHHHHHHcCCEEEeChHHHHHHHHHH
Confidence 88887775433 33343433332 111111 111111 1111223345579999999886654321
Q ss_pred ------CCc-----------ccCCccEEEEecchhhhh
Q 011620 191 ------RGF-----------TLEHLCYLVVDETDRLLR 211 (481)
Q Consensus 191 ------~~~-----------~~~~~~~iViDE~H~~~~ 211 (481)
+.. .+.....=|+||+|....
T Consensus 149 le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 149 LERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 000 022334468899887644
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.12 E-value=2.2e-05 Score=80.19 Aligned_cols=69 Identities=23% Similarity=0.215 Sum_probs=53.7
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
..+.+.|.+|+..++. .....+|.||+|||||.+....+...+.. +.++++++||..-++++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~----g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKR----GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHc----CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 3678999999988764 22568899999999999866545444432 447999999999999988888763
No 191
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.97 E-value=2e-05 Score=75.14 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=38.8
Q ss_pred CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
-++|.|.+|||||+.++-.+.. + .....+.++++++++..|...+.+.+..-
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~-l-~~~~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKE-L-QNSEEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHH-h-hccccCCceEEEEecchHHHHHHHHHhhh
Confidence 4789999999999987664443 3 11234557999999999998877777654
No 192
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.97 E-value=8e-05 Score=77.27 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=42.9
Q ss_pred cCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHh
Q 011620 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224 (481)
Q Consensus 171 ~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~ 224 (481)
....|+++||+.+...+.. +.++++++..|||||||++........+-.++..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~ 58 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQ 58 (814)
T ss_pred hcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHH
Confidence 3458999999999988877 4588999999999999999877766666666544
No 193
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.84 E-value=0.00016 Score=73.15 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=50.0
Q ss_pred chhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHh-hccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.++|+.|+...+. ++-.+|.|++|||||.+... ++..+.. ...+..++++++||..-+..+.+.+....
T Consensus 154 ~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 154 VDWQKVAAAVALT----RRISVISGGPGTGKTTTVAK-LLAALIQLADGERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 4799999877765 67789999999999998544 3333322 22234578999999998888887775543
No 194
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.83 E-value=0.00017 Score=73.52 Aligned_cols=151 Identities=19% Similarity=0.164 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
+.|.+... .+..++.-|+.|+-.++. .....+|.|=+|||||.+....+- .+.. .|.++|+.+-|..-+
T Consensus 658 ~~p~~~~~----~~~~LN~dQr~A~~k~L~---aedy~LI~GMPGTGKTTtI~~LIk-iL~~---~gkkVLLtsyThsAV 726 (1100)
T KOG1805|consen 658 LIPKIKKI----ILLRLNNDQRQALLKALA---AEDYALILGMPGTGKTTTISLLIK-ILVA---LGKKVLLTSYTHSAV 726 (1100)
T ss_pred cCchhhHH----HHhhcCHHHHHHHHHHHh---ccchheeecCCCCCchhhHHHHHH-HHHH---cCCeEEEEehhhHHH
Confidence 55555554 234789999999887775 234578999999999998655433 3332 233688888887776
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhh-cCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc
Q 011620 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK-RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
+.+.-.+..+ ++.+.-+......++...++.- +... .....+ .....+.+.|+.||=-.+.+. -|
T Consensus 727 DNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s----~ks~~~-l~~~~~~~~IVa~TClgi~~p-----lf 792 (1100)
T KOG1805|consen 727 DNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETS----EKSYAD-LKKFLDQTSIVACTCLGINHP-----LF 792 (1100)
T ss_pred HHHHHHHhcc----CcceeecCCccccchHHHHHhcccccc----hhhHHH-HHHHhCCCcEEEEEccCCCch-----hh
Confidence 6655555544 6676666667777777665541 1000 001111 123345678888884333322 23
Q ss_pred ccCCccEEEEecchhhh
Q 011620 194 TLEHLCYLVVDETDRLL 210 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~ 210 (481)
....||+.|+|||-.+.
T Consensus 793 ~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 793 VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred hccccCEEEEccccccc
Confidence 34568999999999753
No 195
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.81 E-value=5.3e-05 Score=71.35 Aligned_cols=70 Identities=26% Similarity=0.228 Sum_probs=55.0
Q ss_pred CchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011620 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (481)
+++-|.+++.. . .+.++|.|+.|||||.+.+.-++..+.....+..+++++|.|+..+..+.+.+...+.
T Consensus 1 l~~eQ~~~i~~--~----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--T----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--C----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 46789888765 2 6889999999999999988877777766544556899999999999999888877643
No 196
>PRK10536 hypothetical protein; Provisional
Probab=97.80 E-value=6.1e-05 Score=66.48 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=40.5
Q ss_pred CCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 011620 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~ 112 (481)
++...+..|..++..+.+ ...+++.||+|||||+.+...+++.+..+. -.++++.=|+..
T Consensus 56 ~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~--~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKD--VDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCC--eeEEEEeCCCCC
Confidence 444566778777766544 567888999999999998887776664432 223555556543
No 197
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.77 E-value=0.00015 Score=73.04 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=48.6
Q ss_pred hhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc-c-CCccEEEEcccHHHHHHHHHHHHHh
Q 011620 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-V-RCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~-~-~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
++|+.|+..++. ++-.+|.|++|||||.+... ++..+.... . .+.++++++||-.-+..+.+.+...
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVAR-LLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHH-HHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 789999888776 67889999999999998544 333333211 1 1257999999998888777766554
No 198
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.72 E-value=0.00048 Score=66.68 Aligned_cols=107 Identities=21% Similarity=0.224 Sum_probs=62.5
Q ss_pred EECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH-----hccccC-------ceEEEeecCCch
Q 011620 74 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-----IAPAVG-------LSVGLAVGQSSI 141 (481)
Q Consensus 74 v~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~-----~~~~~~-------~~v~~~~~~~~~ 141 (481)
..|+||+|||.+....|++....+-. ..|+.+.....++.....+.. ++-... +++-.+..-.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr---~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fs-- 76 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR---NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFS-- 76 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh---hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccC--
Confidence 57999999999988888887766432 377777776666654443321 100000 1111111000
Q ss_pred HHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCC--cc---cCCcc-EEEEecchhhhh
Q 011620 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG--FT---LEHLC-YLVVDETDRLLR 211 (481)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~--~~---~~~~~-~iViDE~H~~~~ 211 (481)
.-.....|+++|.+.|...+.+.+. .. +.+.. +.+-||+|++-.
T Consensus 77 --------------------------ehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 77 --------------------------EHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred --------------------------ccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 0123458999999999888865432 11 33333 456799999744
No 199
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.67 E-value=0.00038 Score=72.41 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=47.5
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHH
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~ 118 (481)
.++ .+++.|++|+..+.. ++-++|.|++|||||.+. ..++..+... .+...+++++||-.-+..+.
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l-~~i~~~~~~~-~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTIT-RAIIELAEEL-GGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred cCC-CCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHH-HHHHHHHHHc-CCCceEEEEeCchHHHHHHH
Confidence 454 899999999998764 677899999999999874 3344444332 11146888999988776443
No 200
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.49 E-value=0.0016 Score=68.13 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=45.3
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~ 118 (481)
.+++-|.+|+..++. .++-++|.|+.|+|||.+.- .+...+.. .+.++++++||..-+..+.
T Consensus 352 ~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~-~i~~~~~~---~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 352 RLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLK-AAREAWEA---AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHH-HHHHHHHh---CCCeEEEEeCcHHHHHHHH
Confidence 789999999988774 23567899999999998733 34444432 3567999999987665543
No 201
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.46 E-value=0.00058 Score=70.31 Aligned_cols=85 Identities=19% Similarity=0.122 Sum_probs=64.1
Q ss_pred CCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011620 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (481)
.-..+++-|++|+.. . ..+++|.|+.|||||.+...-+...+......+.++++++.++..+..+.+.+.....
T Consensus 193 e~~~L~~~Q~~av~~--~----~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 193 ESSPLNPSQARAVVN--G----EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred cCCCCCHHHHHHHhC--C----CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 335799999998642 1 3568999999999999977766666655544556899999999999999988877655
Q ss_pred ccCceEEEeec
Q 011620 127 AVGLSVGLAVG 137 (481)
Q Consensus 127 ~~~~~v~~~~~ 137 (481)
..++.+.++++
T Consensus 267 ~~~v~v~TFHS 277 (684)
T PRK11054 267 TEDITARTFHA 277 (684)
T ss_pred CCCcEEEeHHH
Confidence 44566655554
No 202
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0015 Score=62.27 Aligned_cols=60 Identities=25% Similarity=0.232 Sum_probs=33.8
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc-c-HHHHHHHHHHHHHhccccCceE
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP-T-RDLALQVKDVFAAIAPAVGLSV 132 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P-~-~~L~~q~~~~~~~~~~~~~~~v 132 (481)
..+++.||||+|||.+....+..........+.++.+++- + +.-+ .++++.++...|+++
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa---~eQL~~~a~~lgvpv 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGA---KKQIQTYGDIMGIPV 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHH---HHHHHHHhhcCCcce
Confidence 4578899999999999776554433322123445665552 2 2222 223555555445543
No 203
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.41 E-value=0.00038 Score=72.11 Aligned_cols=82 Identities=20% Similarity=0.099 Sum_probs=61.6
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc--
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA-- 127 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-- 127 (481)
.+++-|++|+.+. ...++|.|+.|||||.+...-+...+...+.+..+++++|-|+..+.++.+.+......
T Consensus 2 ~Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~~ 75 (672)
T PRK10919 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRKE 75 (672)
T ss_pred CCCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCccc
Confidence 4788999986531 46789999999999999887777766543344457999999999999999988876532
Q ss_pred -cCceEEEeec
Q 011620 128 -VGLSVGLAVG 137 (481)
Q Consensus 128 -~~~~v~~~~~ 137 (481)
.++.+.++|+
T Consensus 76 ~~~v~i~TfHS 86 (672)
T PRK10919 76 ARGLMISTFHT 86 (672)
T ss_pred ccCcEEEcHHH
Confidence 2355555554
No 204
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.40 E-value=0.0017 Score=69.12 Aligned_cols=63 Identities=13% Similarity=-0.024 Sum_probs=46.3
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCC-CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~-~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~ 117 (481)
.|+ .+++-|.+|+..++. ++ -++|.|+.|||||++ +..+...+.. .+.+++.++||-.-+..+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~----s~~v~vv~G~AGTGKTT~-l~~~~~~~e~---~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTD----GRDLGVVVGYAGTGKSAM-LGVAREAWEA---AGYEVRGAALSGIAAENL 406 (988)
T ss_pred cCC-CCCHHHHHHHHHHhc----CCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEecCcHHHHHHH
Confidence 344 799999999998875 43 478999999999986 4444444432 356799999998766543
No 205
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.39 E-value=1.4e-05 Score=79.98 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=59.7
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhc---CCceEEEe
Q 011620 317 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE---GKIQVLVS 391 (481)
Q Consensus 317 ~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~vLi~ 391 (481)
..|...|...++.. .+.++++|..-....+.+.+++...+ ....+.|......|++.+++|+. .+.-.|++
T Consensus 614 ~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~----~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cflls 689 (696)
T KOG0383|consen 614 SGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG----KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLS 689 (696)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC----cceeccCCccchhhhhhccccCCCCccceEEEee
Confidence 34445555555533 56799999999999999999887654 66789999999999999999994 24567888
Q ss_pred ccccccc
Q 011620 392 SDAMTRG 398 (481)
Q Consensus 392 t~~l~~G 398 (481)
|...+.|
T Consensus 690 tra~g~g 696 (696)
T KOG0383|consen 690 TRAGGLG 696 (696)
T ss_pred cccccCC
Confidence 9876655
No 206
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.35 E-value=0.00069 Score=71.07 Aligned_cols=72 Identities=21% Similarity=0.129 Sum_probs=57.6
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (481)
..|++-|++|+.+. ...++|.|..|||||.+...-+.+.+.....+..++|++|-|+..+..+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP------PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 46899999986431 4679999999999999977777766654334455899999999999999999988754
No 207
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.30 E-value=0.0038 Score=66.95 Aligned_cols=75 Identities=15% Similarity=0.026 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
.++..+......++ .+++-|.+|+..+.. .++-.+|.|+.|+|||++. .++...+.. .|.+++.++||-.-+
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~l-~~~~~~~e~---~G~~V~g~ApTgkAA 438 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTMM-KAAREAWEA---AGYRVVGGALAGKAA 438 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHHH-HHHHHHHHH---cCCeEEEEcCcHHHH
Confidence 34444443333343 799999999988652 2456889999999999873 334444432 356799999997766
Q ss_pred HHH
Q 011620 115 LQV 117 (481)
Q Consensus 115 ~q~ 117 (481)
..+
T Consensus 439 ~~L 441 (1102)
T PRK13826 439 EGL 441 (1102)
T ss_pred HHH
Confidence 554
No 208
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.22 E-value=0.00071 Score=60.37 Aligned_cols=38 Identities=24% Similarity=0.033 Sum_probs=25.7
Q ss_pred hhHHHHHhhhCCCCC--CCCEEEECCCCchHHHHhHHHHH
Q 011620 54 VQVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 54 ~Q~~a~~~~~~~~~~--~~~~iv~~~tGsGKT~~~~~~i~ 91 (481)
.|..+.+.+.+++.+ ..++++.||+|||||-+++..+.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar 79 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFAR 79 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHH
Confidence 455555544444433 36799999999999998765443
No 209
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.20 E-value=0.0015 Score=68.29 Aligned_cols=70 Identities=21% Similarity=0.123 Sum_probs=55.2
Q ss_pred CchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011620 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (481)
|++-|++|+.+. ..+++|.|+.|||||.+.+.-+...+.....+..+++++|.|+..+.++.+.+.+...
T Consensus 2 Ln~~Q~~av~~~------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEYV------TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 678898886531 4689999999999999988777777654333445799999999999999998887653
No 210
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.15 E-value=0.00098 Score=69.91 Aligned_cols=83 Identities=19% Similarity=0.144 Sum_probs=62.3
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc-
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA- 127 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~- 127 (481)
..|++-|++|+.+. ...++|.|+.|||||.+...-+...+.....+..+++++|-|+..+.++.+.+.++...
T Consensus 8 ~~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~ 81 (721)
T PRK11773 8 DSLNDKQREAVAAP------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS 81 (721)
T ss_pred HhcCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC
Confidence 36899999986531 46799999999999999777777666543344457999999999999999999887542
Q ss_pred -cCceEEEeec
Q 011620 128 -VGLSVGLAVG 137 (481)
Q Consensus 128 -~~~~v~~~~~ 137 (481)
.++.+.++|+
T Consensus 82 ~~~~~i~TfHs 92 (721)
T PRK11773 82 QGGMWVGTFHG 92 (721)
T ss_pred CCCCEEEcHHH
Confidence 2344555554
No 211
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.11 E-value=0.0039 Score=49.98 Aligned_cols=20 Identities=45% Similarity=0.567 Sum_probs=13.9
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
++.++|.|++|+|||.+.-.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHH
Confidence 56789999999999997544
No 212
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.09 E-value=0.0059 Score=57.43 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=41.0
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEee
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAV 136 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 136 (481)
++.+.+.||||.|||.+....+....+..+.+. -.+|.+.|--.. ..++++.++...|+++....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~k-VaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv~ 267 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKK-VAIITTDTYRIG--AVEQLKTYADIMGVPLEVVY 267 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcc-eEEEEeccchhh--HHHHHHHHHHHhCCceEEec
Confidence 566889999999999997776666653332221 244444554443 45677777766676654443
No 213
>PRK06526 transposase; Provisional
Probab=97.06 E-value=0.0031 Score=56.74 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=25.0
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
+.++++.||+|+|||..+...+..... .+.++++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~----~g~~v~f~t~ 134 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ----AGHRVLFATA 134 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH----CCCchhhhhH
Confidence 678999999999999986654433332 2445665433
No 214
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.99 E-value=0.0018 Score=61.91 Aligned_cols=63 Identities=25% Similarity=0.316 Sum_probs=43.3
Q ss_pred CCchhhHHHHHhhhCCC--CCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPG--LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~--~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q 116 (481)
.|++-|+++++.+++++ ..+..+.|.|+-|+|||+.+- .+.+.+.. .+..+++++||-.-|..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~---~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS---RGKKVLVTAPTGIAAFN 65 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc---ccceEEEecchHHHHHh
Confidence 36778999988875544 346789999999999999733 34444433 23468888888655443
No 215
>PRK04296 thymidine kinase; Provisional
Probab=96.98 E-value=0.0015 Score=56.15 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=24.2
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
.-.++.||+|+|||..++..+..... .+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~----~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE----RGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH----cCCeEEEEec
Confidence 34678999999999876654443322 2446888765
No 216
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.94 E-value=0.006 Score=52.57 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=35.7
Q ss_pred CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEee
Q 011620 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAV 136 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 136 (481)
-+++.||||+|||.+....+.....+ +.++.+++-...-+ -..++++.++...++++....
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~----~~~v~lis~D~~R~-ga~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK----GKKVALISADTYRI-GAVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT----T--EEEEEESTSST-HHHHHHHHHHHHHTEEEEESS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc----cccceeecCCCCCc-cHHHHHHHHHHHhccccchhh
Confidence 36789999999999977755544433 33566665322211 134556666555576655543
No 217
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.0061 Score=57.67 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=33.9
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceE
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSV 132 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v 132 (481)
.+..+++.||||+|||.+....+.......+ ..++.+++.. ..-.--.+.++.++...|+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G--~~~V~lit~D-~~R~ga~EqL~~~a~~~gv~~ 197 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFG--ASKVALLTTD-SYRIGGHEQLRIFGKILGVPV 197 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEecc-cccccHHHHHHHHHHHcCCce
Confidence 3567889999999999997765554433321 1245555422 211112344555544445443
No 218
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.0049 Score=55.50 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=33.9
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 011620 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 66 ~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (481)
+..+.++++.||+|+|||..+.. +...+... |. -++.+++.+++.++...+.
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~A-i~~~l~~~---g~-sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIA-IGNELLKA---GI-SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHH-HHHHHHHc---CC-eEEEEEHHHHHHHHHHHHh
Confidence 33578999999999999998655 44444432 33 4444556677666555543
No 219
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.85 E-value=0.0034 Score=56.36 Aligned_cols=58 Identities=26% Similarity=0.377 Sum_probs=49.5
Q ss_pred HHHHHHhcCCceEEEecccccccCCCCC--------CCEEEEecCCCChhhHHHHHhhhhcCCCCC
Q 011620 376 KTLKAFREGKIQVLVSSDAMTRGMDVEG--------VNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (481)
Q Consensus 376 ~~~~~f~~g~~~vLi~t~~l~~Gidi~~--------~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g 433 (481)
...+.|.+|+.+|+|.++..+.||.+.. -.+-|...+|||....+|..||++|.|+..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~ 117 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVS 117 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhcccccccccc
Confidence 5567899999999999999999998863 235667889999999999999999988753
No 220
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.82 E-value=0.003 Score=66.54 Aligned_cols=83 Identities=22% Similarity=0.198 Sum_probs=61.6
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc-
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA- 127 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~- 127 (481)
..|++-|.+|+.+. ...++|.|+.|||||.+...-+.+.+........++|++|-|+..+..+.+.+..++..
T Consensus 3 ~~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~~ 76 (726)
T TIGR01073 3 AHLNPEQREAVKTT------EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGPV 76 (726)
T ss_pred cccCHHHHHHHhCC------CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhccc
Confidence 36899999986531 46799999999999999887777766544334457999999999999998888877542
Q ss_pred -cCceEEEeec
Q 011620 128 -VGLSVGLAVG 137 (481)
Q Consensus 128 -~~~~v~~~~~ 137 (481)
.++.+.++++
T Consensus 77 ~~~~~i~TFHs 87 (726)
T TIGR01073 77 AEDIWISTFHS 87 (726)
T ss_pred cCCcEEEcHHH
Confidence 2344554444
No 221
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.75 E-value=0.0092 Score=48.69 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=16.5
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
++.+++.||+|+|||..+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~ 38 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA 38 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56799999999999976443
No 222
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.66 E-value=0.021 Score=50.30 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=25.8
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEccc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~ 110 (481)
+.+.+.||+|+|||.. +.++.+.+... .++.+++++...
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~-~~~~~v~y~~~~ 73 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQ-HPGKRVVYLSAE 73 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHH-CTTS-EEEEEHH
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhc-cccccceeecHH
Confidence 4589999999999995 45555555443 335567777644
No 223
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.57 E-value=0.0096 Score=59.35 Aligned_cols=75 Identities=21% Similarity=0.105 Sum_probs=54.7
Q ss_pred hhhHHHHHhhhCC-----CCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011620 53 PVQVAVWQETIGP-----GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 53 ~~Q~~a~~~~~~~-----~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (481)
|+|.-.+..++.- ...-+.+++..|=|.|||......++..+.-.+..+..++++++++..+....+.+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 5677666665521 01114588899999999998777666666554456678999999999999999888887654
No 224
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.49 E-value=0.098 Score=60.74 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=47.0
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~ 120 (481)
.+.+-|.+|+..++.. ..+-.+|.++.|+|||.+ +-.+...+.. .|.++++++||..-+.++.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s--~~~v~ii~G~aGTGKTt~-l~~l~~~~~~---~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTS--TKRFIIINGFGGTGSTEI-AQLLLHLASE---QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhC--CCCeEEEEECCCCCHHHH-HHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHH
Confidence 6889999999887751 125578999999999987 3334443332 356899999998877665554
No 225
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.47 E-value=0.016 Score=53.36 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=46.8
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCC--CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~--~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
+|...-+.+|.-|++.+++ . .=+.+.++-|||||+.++.+.+......+..+ ++++.=|+....
T Consensus 224 wGi~prn~eQ~~ALdlLld----~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~-KiiVtRp~vpvG 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLD----DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYR-KIIVTRPTVPVG 289 (436)
T ss_pred hccCcccHHHHHHHHHhcC----CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhc-eEEEecCCcCcc
Confidence 5776677788888777664 3 23678999999999999999888876654332 577777776554
No 226
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.31 E-value=0.021 Score=50.95 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEE
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil 107 (481)
..+++.|++|+|||..+.. +...+... +..++++
T Consensus 100 ~~~~l~G~~GtGKThLa~a-ia~~l~~~---g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA-ICNELLLR---GKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHhc---CCeEEEE
Confidence 4789999999999998654 44444432 3356665
No 227
>PRK14974 cell division protein FtsY; Provisional
Probab=96.27 E-value=0.056 Score=50.65 Aligned_cols=48 Identities=15% Similarity=0.123 Sum_probs=28.3
Q ss_pred CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEccc---HHHHHHHHHHHH
Q 011620 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT---RDLALQVKDVFA 122 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~---~~L~~q~~~~~~ 122 (481)
-+++.|++|+|||.+....+ ..+.. .+.+++++... ..-.+|+.....
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~---~g~~V~li~~Dt~R~~a~eqL~~~a~ 192 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKK---NGFSVVIAAGDTFRAGAIEQLEEHAE 192 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHH---cCCeEEEecCCcCcHHHHHHHHHHHH
Confidence 47789999999999865544 34433 23457666543 233345443333
No 228
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.19 E-value=0.017 Score=53.15 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=23.9
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
++.+++.||||+|||.+....+........ +.++.+++
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g--~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHG--NKKVALIT 231 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcC--CCeEEEEE
Confidence 346788999999999987664443333211 13466555
No 229
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.17 E-value=0.098 Score=51.53 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=30.7
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~ 121 (481)
+.+++.|++|+|||... .++.+.+... .++.+++++.+ ..+..++...+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~-~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN-FSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh-CCCCeEEEEEH-HHHHHHHHHHH
Confidence 56889999999999764 4455554432 33456777665 44544444443
No 230
>PRK08181 transposase; Validated
Probab=96.17 E-value=0.057 Score=49.01 Aligned_cols=45 Identities=27% Similarity=0.257 Sum_probs=29.3
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~ 117 (481)
.++++++.||+|+|||..+... ...+.. .+.+++++. ...|..++
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Ai-a~~a~~---~g~~v~f~~-~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAI-GLALIE---NGWRVLFTR-TTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHH-HHHHHH---cCCceeeee-HHHHHHHH
Confidence 3678999999999999876543 333332 234565554 45666654
No 231
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.11 E-value=0.042 Score=51.56 Aligned_cols=42 Identities=24% Similarity=0.464 Sum_probs=32.1
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~ 91 (481)
.++|||...|..++....-...+++.||.|+|||..+...+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~ 44 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAA 44 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHH
Confidence 458999999999887533334588999999999988665333
No 232
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=96.07 E-value=0.016 Score=51.58 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=76.2
Q ss_pred hhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCC----ceEEEecccccccCCCCCCCEEEEecCCCChhh
Q 011620 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK----IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (481)
Q Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~ 418 (481)
..-+.+...|...-..++.+..++++.+... ++ +.++. ..|+|+-+.+++|+.++++.+..+...+...++
T Consensus 94 ~s~~ei~~~l~~~~~~~~~v~~vNS~~~~~~----ld-y~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DT 168 (239)
T PF10593_consen 94 PSWEEIKPELPKAISDGIEVVVVNSGSSDDS----LD-YDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDT 168 (239)
T ss_pred cCHHHHHHHHHHHHhcCceEEEEeCCCcccc----cc-ccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHH
Confidence 3334444444332111367777776554422 22 33332 778999999999999999999999999998888
Q ss_pred HHHHHhh--hhcCCCCCcEEEEEeCCcchhhhhhcccccchhhhh
Q 011620 419 YIHRAGR--TARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSDIL 461 (481)
Q Consensus 419 ~~Q~~GR--~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 461 (481)
+.|| || +-|.|-.+.|-++.++.-...+..+.+....-.+.+
T Consensus 169 L~Qm-gRwFGYR~gY~dl~Ri~~~~~l~~~f~~i~~~~e~lr~~i 212 (239)
T PF10593_consen 169 LMQM-GRWFGYRPGYEDLCRIYMPEELYDWFRHIAEAEEELREEI 212 (239)
T ss_pred HHHH-hhcccCCcccccceEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 55 446666778999998877777777665555444444
No 233
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.04 E-value=0.011 Score=47.92 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=26.7
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
+..+++.||+|+|||..+.. ++..+... +..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~---~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPP---GGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCC---CCCEEEECCEEccc
Confidence 56789999999999997544 33222221 12477777665443
No 234
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.03 E-value=0.015 Score=49.33 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=27.4
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 011620 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 66 ~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q 116 (481)
+..+.++++.||+|+|||..+...+...+. .+..++|+ +..+|..+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~----~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR----KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH----TT--EEEE-EHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc----CCcceeEe-ecCceecc
Confidence 335688999999999999986664444333 24456665 44455554
No 235
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.03 E-value=0.085 Score=45.22 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=33.0
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
++|.||+|+|||..++-.+...+. .+.+++|++.. +...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----~g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----RGEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----CCCcEEEEECC-CCHHHHHHHHHHc
Confidence 689999999999986665555443 24468888654 4455666666655
No 236
>PRK12377 putative replication protein; Provisional
Probab=96.02 E-value=0.035 Score=49.71 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=27.9
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~ 118 (481)
.++++.||+|+|||..+.. +...+... +..++++ +..++..++.
T Consensus 102 ~~l~l~G~~GtGKThLa~A-Ia~~l~~~---g~~v~~i-~~~~l~~~l~ 145 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAA-IGNRLLAK---GRSVIVV-TVPDVMSRLH 145 (248)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHc---CCCeEEE-EHHHHHHHHH
Confidence 5799999999999997554 44444432 3345444 4445555443
No 237
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.99 E-value=0.048 Score=51.06 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.5
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
.++|++||+|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 5799999999999987654
No 238
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.97 E-value=0.046 Score=61.80 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=46.0
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHh-hccCCccEEEEcccHHHHHHH
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~~lil~P~~~L~~q~ 117 (481)
..+++.|.+|+..++.. .++-++|.|..|+|||.+. -.+...+.. ....+.+++.++||..-+.++
T Consensus 966 ~~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 37899999999988851 1246889999999999873 334433322 122355789999998776654
No 239
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.95 E-value=0.04 Score=61.48 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=45.4
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHh-hccCCccEEEEcccHHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~~lil~P~~~L~~q~ 117 (481)
.+++.|.+|+..++.. .++-++|.|..|+|||.+.-. ++..+.. ....+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~~-i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFRA-VMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHHH-HHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 7999999999888751 135688999999999997322 2322221 112355799999998776654
No 240
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.95 E-value=0.024 Score=50.39 Aligned_cols=86 Identities=22% Similarity=0.274 Sum_probs=59.8
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCC-chHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEe
Q 011620 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS-SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (481)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~ 178 (481)
..|.+||+|.+---+..+.+.++.|... +..|..+.+.- ...+++..+.+ ...+|.||
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~--------------------~~~~i~vG 183 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKK--------------------TRVHIAVG 183 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHh--------------------CCceEEEe
Confidence 3578999999987787888888877321 22344444433 22333222211 24689999
Q ss_pred CChhHHHhhhcCCCcccCCccEEEEecch
Q 011620 179 TPGRLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iViDE~H 207 (481)
||+++..++.. +.+.++++.+||+|--|
T Consensus 184 TP~Rl~kLle~-~~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 184 TPGRLSKLLEN-GALSLSNLKRIVLDWSY 211 (252)
T ss_pred ChHHHHHHHHc-CCCCcccCeEEEEcCCc
Confidence 99999999977 56889999999999877
No 241
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.94 E-value=0.042 Score=61.25 Aligned_cols=124 Identities=16% Similarity=0.140 Sum_probs=78.3
Q ss_pred CchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCc
Q 011620 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 130 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 130 (481)
+++-|.+|+.. .+++++|.|+-|||||.+..--++..+..+. .--+++++|=|+..+..+.+.+....... +
T Consensus 2 ~t~~Q~~ai~~------~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~-~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~ 73 (1232)
T TIGR02785 2 WTDEQWQAIYT------RGQNILVSASAGSGKTAVLVERIIKKILRGV-DIDRLLVVTFTNAAAREMKERIEEALQKA-L 73 (1232)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCC-CHhhEEEEeccHHHHHHHHHHHHHHHHHH-H
Confidence 57889998752 3789999999999999998777777665542 22369999999999988888877654321 0
Q ss_pred eEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCccc-CCccEEEEecchh
Q 011620 131 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL-EHLCYLVVDETDR 208 (481)
Q Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~-~~~~~iViDE~H~ 208 (481)
. . .... ..+.+.+..-...-|+|.+.|...+.+.....+ -+.++=|.||...
T Consensus 74 ~--~-~p~~-----------------------~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 Q--Q-EPNS-----------------------KHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred h--c-Cchh-----------------------HHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 0 0000 001111222236678999999766654222111 1234566888875
No 242
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.94 E-value=0.1 Score=54.39 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=28.1
Q ss_pred CchhhHHHHHhhhCCCCCC---CCE-EEECCCCchHHHHhHHHHHHHH
Q 011620 51 LFPVQVAVWQETIGPGLFE---RDL-CINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~---~~~-iv~~~tGsGKT~~~~~~i~~~l 94 (481)
-|.-|.+.+..++.....+ .++ .|.|+||+|||.+.-. ++..+
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~-VLrEL 805 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYS-VIQLL 805 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHH-HHHHH
Confidence 5667777776666543322 234 5999999999998655 33444
No 243
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.90 E-value=0.017 Score=51.87 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=26.5
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHhhc---cCCccEEEEcccHHHHH
Q 011620 72 LCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLAL 115 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~~~lil~P~~~L~~ 115 (481)
.+|-||||+||+.. +..+.+.. .....|++++|.+..+-
T Consensus 90 ~~VYGPTG~GKSqL-----lRNLis~~lI~P~PETVfFItP~~~mIp 131 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-----LRNLISCQLIQPPPETVFFITPQKDMIP 131 (369)
T ss_pred EEEECCCCCCHHHH-----HHHhhhcCcccCCCCceEEECCCCCCCC
Confidence 57899999999984 33333321 22346999999886654
No 244
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.90 E-value=0.042 Score=46.15 Aligned_cols=39 Identities=26% Similarity=0.152 Sum_probs=26.9
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~ 112 (481)
.=.++.+|++||||...+. .+.+..-.+.++++..|...
T Consensus 5 ~l~~i~gpM~SGKT~eLl~----r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLR----RARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEEEccCcCcchHHHHH----HHHHHHHcCCeEEEEecccc
Confidence 3457899999999997433 33333344567999988743
No 245
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.88 E-value=0.028 Score=54.86 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.4
Q ss_pred CEEEECCCCchHHHHhHHHH
Q 011620 71 DLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i 90 (481)
.+++.||.|+|||.++...+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999866533
No 246
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.86 E-value=0.13 Score=51.95 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=49.8
Q ss_pred CchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011620 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (481)
|.|.-.+-++++++.+. .+-.++.+|=|.|||.+..+.+...+.. .+.+++|.+|...-+.++.+.+..++..
T Consensus 170 ~~~~~~~~id~~~~~fk-q~~tV~taPRqrGKS~iVgi~l~~La~f---~Gi~IlvTAH~~~ts~evF~rv~~~le~ 242 (752)
T PHA03333 170 PSPRTLREIDRIFDEYG-KCYTAATVPRRCGKTTIMAIILAAMISF---LEIDIVVQAQRKTMCLTLYNRVETVVHA 242 (752)
T ss_pred CChhhHHHHHHHHHHHh-hcceEEEeccCCCcHHHHHHHHHHHHHh---cCCeEEEECCChhhHHHHHHHHHHHHHH
Confidence 34444444555554332 4557789999999999866555544332 2457999999999999888887777653
No 247
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.83 E-value=0.16 Score=42.21 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=24.7
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
++|.|++|+|||..+...+.... . .+..++++.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~-~---~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA-T---KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH-h---cCCEEEEEECCcchH
Confidence 57899999999997555333322 2 244577776554443
No 248
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.76 E-value=0.043 Score=53.94 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHcCCCC-------CchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc--cCCccE
Q 011620 34 CLDPRLKVALQNMGISS-------LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRA 104 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~-------~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~--~~~~~~ 104 (481)
+-++-++..|++.--.. .-+-|-+++. ...++-++|.|..|||||.+++--+...+.... ..+..|
T Consensus 189 ~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR-----~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~v 263 (747)
T COG3973 189 GRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIR-----FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPV 263 (747)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHh-----ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCce
Confidence 34556677776643333 3344544432 123456889999999999998887776665542 123349
Q ss_pred EEEcccHHHHHHHHHHHHHhc
Q 011620 105 LVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 105 lil~P~~~L~~q~~~~~~~~~ 125 (481)
+|+.|++....=+.+.+-.++
T Consensus 264 lvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 264 LVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred EEEcCcHHHHHHHHHhchhhc
Confidence 999999998776666665553
No 249
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.76 E-value=0.044 Score=49.80 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=28.5
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhcc--------CCccEEEEcccHHHHHHHHHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAV--------RCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~--------~~~~~lil~P~~~L~~q~~~~~~ 122 (481)
.++++.|+||.|||.+ +..+..... .-|-+++-+|...-...++..+-
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 6899999999999985 333322211 11334555666665555555443
No 250
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.74 E-value=0.017 Score=50.00 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.5
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
.+++++||+|+|||..+-.
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 4699999999999986544
No 251
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.74 E-value=0.024 Score=60.24 Aligned_cols=151 Identities=16% Similarity=0.127 Sum_probs=0.0
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHH--------------HhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEE
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTL--------------SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGL 134 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l--------------~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~ 134 (481)
|.++++.-..|.|||..-+...+... ..+.....-+||+||. ++..||.+++.+.+... ++|..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Q ss_pred eecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc-ccCCccE-------------
Q 011620 135 AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCY------------- 200 (481)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~-~~~~~~~------------- 200 (481)
+.|-.........-+ -.+||++|||+.|..-+...... ....+++
T Consensus 452 Y~Girk~~~~~~~el---------------------~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~ 510 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFEL---------------------LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLM 510 (1394)
T ss_pred EechhhhcccCchhh---------------------hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHH
Q ss_pred -----EEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEE
Q 011620 201 -----LVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (481)
Q Consensus 201 -----iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat 275 (481)
|++|||+.+-. ..........++ +....=.+|+|
T Consensus 511 v~wWRIclDEaQMves--ssS~~a~M~~rL---------------------------------------~~in~W~VTGT 549 (1394)
T KOG0298|consen 511 VNWWRICLDEAQMVES--SSSAAAEMVRRL---------------------------------------HAINRWCVTGT 549 (1394)
T ss_pred HHHHHHhhhHHHhhcc--hHHHHHHHHHHh---------------------------------------hhhceeeecCC
Q ss_pred EecCcccc
Q 011620 276 LTQDPNKL 283 (481)
Q Consensus 276 ~~~~~~~~ 283 (481)
|-...+.+
T Consensus 550 Piq~Iddl 557 (1394)
T KOG0298|consen 550 PIQKIDDL 557 (1394)
T ss_pred chhhhhhh
No 252
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.64 E-value=0.055 Score=51.62 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHcCCCCCchhhHH-HHHhhh---CCCCCCCCEEEECCCCchHHHHhHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVA-VWQETI---GPGLFERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~-a~~~~~---~~~~~~~~~iv~~~tGsGKT~~~~~ 88 (481)
..+|+--.+...|+. |..+..+ .+..+. .-+..+.+++..||+|+|||..|..
T Consensus 172 ~dEWid~LlrSiG~~-P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 172 LEEWIDVLIRSIGYE-PEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHHHHHHHHhcCCC-cccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 555665566667773 3333222 111111 2234578999999999999987654
No 253
>PRK08116 hypothetical protein; Validated
Probab=95.60 E-value=0.18 Score=45.90 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=26.7
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q 116 (481)
..+++.|++|+|||..+.. +.+.+... +..++++ +...+..+
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l~~~---~~~v~~~-~~~~ll~~ 156 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANELIEK---GVPVIFV-NFPQLLNR 156 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHHc---CCeEEEE-EHHHHHHH
Confidence 3589999999999998554 55555443 3345544 44444443
No 254
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.59 E-value=0.11 Score=49.20 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=23.9
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
+.+.+.||||+|||.+....+.. +.. .+.++.++..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~---~GkkVglI~a 277 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG---KKKTVGFITT 277 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH---cCCcEEEEec
Confidence 46789999999999987665443 322 2335665553
No 255
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.58 E-value=0.035 Score=50.55 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=16.4
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
.++++.||+|+|||..+-.
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 5689999999999998655
No 256
>PRK06893 DNA replication initiation factor; Validated
Probab=95.58 E-value=0.084 Score=46.94 Aligned_cols=37 Identities=14% Similarity=0.011 Sum_probs=22.9
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
+..++++||+|+|||..+.. +.+.+... +.++.|+.-
T Consensus 39 ~~~l~l~G~~G~GKThL~~a-i~~~~~~~---~~~~~y~~~ 75 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKA-VSNHYLLN---QRTAIYIPL 75 (229)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHc---CCCeEEeeH
Confidence 34578999999999987444 33333322 334665553
No 257
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.56 E-value=0.054 Score=52.81 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=24.4
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
++.+++.+|||+|||.+....+...... ..+.++.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~--~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL--YGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh--cCCCeEEEEE
Confidence 4568899999999999876644443311 1233566665
No 258
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.044 Score=52.16 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=28.7
Q ss_pred CchhhHHHHHhhhCCCCCC---CCEEEECCCCchHHHHhHHHHHHHHHhh
Q 011620 51 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQTLSNR 97 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~---~~~iv~~~tGsGKT~~~~~~i~~~l~~~ 97 (481)
-|.-|.+.+..++.+...+ .++++.|+||||||.+.-. +...+...
T Consensus 21 ~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~-v~~~l~~~ 69 (366)
T COG1474 21 HREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKF-VMEELEES 69 (366)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHH-HHHHHHhh
Confidence 4555555555444433222 4699999999999998655 45555443
No 259
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.50 E-value=0.12 Score=40.40 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=31.5
Q ss_pred EEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc-----ccHHHHHHHHHHHHHh
Q 011620 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-----PTRDLALQVKDVFAAI 124 (481)
Q Consensus 73 iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~-----P~~~L~~q~~~~~~~~ 124 (481)
.+.|+||+|||++.-+ +.+.+...+.+...|.... |....+.+..++++.+
T Consensus 57 SfHG~tGtGKn~v~~l-iA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~ 112 (127)
T PF06309_consen 57 SFHGWTGTGKNFVSRL-IAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSW 112 (127)
T ss_pred EeecCCCCcHHHHHHH-HHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHH
Confidence 3799999999999887 4444444434433444433 5555566555555544
No 260
>PRK09183 transposase/IS protein; Provisional
Probab=95.49 E-value=0.33 Score=44.01 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=28.0
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q 116 (481)
.+.++++.||+|+|||..+......... .+.+++++. ...+..+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~----~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR----AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEEe-HHHHHHH
Confidence 3788999999999999976654332222 244576664 3345433
No 261
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.45 E-value=0.093 Score=48.86 Aligned_cols=42 Identities=26% Similarity=0.251 Sum_probs=33.4
Q ss_pred CCCchhhHHHHHhhhCCCCCCC---CEEEECCCCchHHHHhHHHH
Q 011620 49 SSLFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~---~~iv~~~tGsGKT~~~~~~i 90 (481)
..++|+|..+|..+...+..++ -+++.||.|+||+..+...+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA 47 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALA 47 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH
Confidence 4689999999998887655553 48899999999998866533
No 262
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.32 E-value=0.032 Score=51.30 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=44.9
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHH
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~ 115 (481)
..|.++.+-|...+..++. ...++++++.||||||.. ++.+........|++.+=-|.+|..
T Consensus 153 i~~gt~~~~~a~~L~~av~---~r~NILisGGTGSGKTTl-----LNal~~~i~~~eRvItiEDtaELql 214 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVG---IRCNILISGGTGSGKTTL-----LNALSGFIDSDERVITIEDTAELQL 214 (355)
T ss_pred HHcCCcCHHHHHHHHHHHh---hceeEEEeCCCCCCHHHH-----HHHHHhcCCCcccEEEEeehhhhcc
Confidence 3567999999998877775 236999999999999984 3333333344457888888877754
No 263
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.32 E-value=0.072 Score=52.37 Aligned_cols=53 Identities=17% Similarity=0.048 Sum_probs=34.5
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
..+.-+++.+++|+|||...+..+.... ..+.+++|++-. +-..|+......+
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a----~~g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLA----AAGGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHH----hcCCeEEEEEcc-ccHHHHHHHHHHc
Confidence 3456688999999999997665444333 124468888754 3445666655555
No 264
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.27 E-value=0.092 Score=54.86 Aligned_cols=83 Identities=11% Similarity=0.210 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcC-CcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cccccCCCCCCCEEE
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l~~Gidi~~~~~vI 408 (481)
.+.+++|.+|+..-|...++.+++.. ..++++..++|+++..+|.+.++...+|+.+|+|+|. .+...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 45689999999999999888887653 2348899999999999999999999999999999996 445567888899988
Q ss_pred EecCC
Q 011620 409 NYDKP 413 (481)
Q Consensus 409 ~~~~p 413 (481)
+....
T Consensus 389 IDE~H 393 (681)
T PRK10917 389 IDEQH 393 (681)
T ss_pred Eechh
Confidence 76543
No 265
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.24 E-value=0.043 Score=54.48 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.4
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i 90 (481)
..+++.||.|+|||.++...+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999876643
No 266
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.22 E-value=0.25 Score=48.59 Aligned_cols=78 Identities=17% Similarity=0.050 Sum_probs=57.7
Q ss_pred CCchhhHHHHHhhhCCCCCC------CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFE------RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~------~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
.+-|||.-++..++.-...+ +.++|..|=+-|||..+...+...+.-....+..+.+++|+.+.+.+....++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 78999999988877433222 347899999999999866545544444445667899999999988888877777
Q ss_pred hccc
Q 011620 124 IAPA 127 (481)
Q Consensus 124 ~~~~ 127 (481)
.+..
T Consensus 141 mv~~ 144 (546)
T COG4626 141 MVKR 144 (546)
T ss_pred HHHh
Confidence 6553
No 267
>PRK05642 DNA replication initiation factor; Validated
Probab=95.22 E-value=0.15 Score=45.41 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=23.4
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
+.++++||+|+|||..+ .++.+.+.. .+.+++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl-~a~~~~~~~---~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLL-QAACLRFEQ---RGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHh---CCCcEEEeeH
Confidence 56889999999999873 334443332 2345776654
No 268
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.20 E-value=0.058 Score=50.33 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=38.8
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
.+.+.|.+.+..++. .+.+++|.|+||||||.. +.+++..+... .+..+++.+-.+.++
T Consensus 132 ~~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~-~~~~rivtIEd~~El 190 (319)
T PRK13894 132 IMTAAQREAIIAAVR---AHRNILVIGGTGSGKTTL-VNAIINEMVIQ-DPTERVFIIEDTGEI 190 (319)
T ss_pred CCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHhhhhc-CCCceEEEEcCCCcc
Confidence 356778877766554 468899999999999954 44455443211 233467777776665
No 269
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=95.16 E-value=0.01 Score=50.26 Aligned_cols=51 Identities=22% Similarity=0.179 Sum_probs=32.4
Q ss_pred CchhHHHhhccCCcEEEeCChhHHHhhhcCCCc-ccCCccEEEEecchhhhh
Q 011620 161 DPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLR 211 (481)
Q Consensus 161 ~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~-~~~~~~~iViDE~H~~~~ 211 (481)
.|....+.....++|+|+++..|+.-....... ....-.+|||||||.+.+
T Consensus 108 CPY~~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 108 CPYYLARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp -HHHHHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ChhHHHHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 355555667778999999999887654321111 112346899999999744
No 270
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.15 E-value=0.19 Score=49.13 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=25.1
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
+.+++.||+|+|||..+. ++.+.+... .++.+++++..
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~-~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILEN-NPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHh-CCCCcEEEEEH
Confidence 458899999999999753 355554432 22445777743
No 271
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.11 E-value=0.1 Score=52.86 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=16.8
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i 90 (481)
..+++.||.|+|||.++...+
T Consensus 38 HAyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 356999999999999866533
No 272
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.06 E-value=0.17 Score=52.12 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.3
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
-+|+.||.|+|||.++..
T Consensus 40 AyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999987665
No 273
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.05 E-value=0.078 Score=54.85 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=33.7
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEE
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGL 134 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~ 134 (481)
++-+.+.||||+|||.+....+.......+ +.++.+++-...-+ -..+.++.+....++++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G--~kkV~lit~Dt~Ri-gA~eQL~~~a~~~gvpv~~ 247 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREG--ADQLALLTTDSFRI-GALEQLRIYGRILGVPVHA 247 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcC--CCeEEEecCcccch-HHHHHHHHHHHhCCCCccc
Confidence 345789999999999986664443322221 12455554322211 0234455555555655543
No 274
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.04 E-value=0.11 Score=51.28 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=17.4
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i 90 (481)
+.+++.||.|+|||.++...+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 468999999999999876533
No 275
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.02 E-value=0.27 Score=46.11 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=29.1
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~ 117 (481)
+.++++.||||+|||+.+.. +...+.. .+..|++++ ...+..++
T Consensus 183 ~~~Lll~G~~GtGKThLa~a-Ia~~l~~---~g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNC-IAKELLD---RGKSVIYRT-ADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHH-HHHHHHH---CCCeEEEEE-HHHHHHHH
Confidence 47899999999999997554 4444443 244566654 45565544
No 276
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.98 E-value=0.0096 Score=49.83 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=25.4
Q ss_pred EEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 73 iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
++.|+=|-|||.+.-+.+...+..+ ..+++|.+|+.+-++.+.+.+...+...+
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~---~~~I~vtAP~~~~~~~lf~~~~~~l~~~~ 54 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG---KIRILVTAPSPENVQTLFEFAEKGLKALG 54 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS--------EEEE-SS--S-HHHHHCC--------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc---CceEEEecCCHHHHHHHHHHHHhhccccc
Confidence 4788999999987554433333222 13699999999988776666655544333
No 277
>PLN03025 replication factor C subunit; Provisional
Probab=94.96 E-value=0.13 Score=48.37 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=16.2
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
.+++++||+|+|||..+..
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999987555
No 278
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.95 E-value=0.17 Score=50.24 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=27.1
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q 116 (481)
+.+++.||+|+|||..+.. +...+... .++.+++++.. ..+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~-~~~~~v~yi~~-~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEK-NPNAKVVYVTS-EKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEEEH-HHHHHH
Confidence 5689999999999987443 44444432 22445666644 344443
No 279
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.95 E-value=0.27 Score=48.63 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=19.8
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHH
Q 011620 67 LFERDLCINSPTGSGKTLSYALPIVQ 92 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~~~~~i~~ 92 (481)
..++.+.+.||||+|||.+....+..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34677889999999999986554443
No 280
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.95 E-value=0.29 Score=46.87 Aligned_cols=40 Identities=20% Similarity=0.077 Sum_probs=25.3
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEccc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~ 110 (481)
.+.++++||+|+|||.. +.++.+..... .+..++++++..
T Consensus 113 ~nplfi~G~~GlGKTHL-l~Aign~~~~~-~~~a~v~y~~se 152 (408)
T COG0593 113 YNPLFIYGGVGLGKTHL-LQAIGNEALAN-GPNARVVYLTSE 152 (408)
T ss_pred CCcEEEECCCCCCHHHH-HHHHHHHHHhh-CCCceEEeccHH
Confidence 46799999999999995 23333333332 344456666544
No 281
>PHA02533 17 large terminase protein; Provisional
Probab=94.92 E-value=0.12 Score=51.82 Aligned_cols=71 Identities=14% Similarity=0.025 Sum_probs=52.4
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (481)
.|+|+|.+.+..+.. ++-.++..+=..|||.+....++...... ++..+++++|+...+..+.+.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~--~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFN--KDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 689999998876542 45567888889999999776555444432 345899999999988887777765543
No 282
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.92 E-value=0.73 Score=46.72 Aligned_cols=45 Identities=20% Similarity=0.137 Sum_probs=27.2
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~ 117 (481)
+.++|.|++|+|||..+. ++.+.+... ..+.+++|+.. ..++.++
T Consensus 315 NpL~LyG~sGsGKTHLL~-AIa~~a~~~-~~g~~V~Yita-eef~~el 359 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLH-AIGHYARRL-YPGTRVRYVSS-EEFTNEF 359 (617)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHHHh-CCCCeEEEeeH-HHHHHHH
Confidence 458999999999998633 344444331 23445666654 3444443
No 283
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.92 E-value=0.12 Score=49.34 Aligned_cols=52 Identities=17% Similarity=0.058 Sum_probs=32.8
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.+.-+++.+++|+|||...+..+..... .+.+++|+.-. +...|+.....++
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~----~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAK----RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh----cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 3566889999999999976654433322 23468888654 3345555555544
No 284
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.86 E-value=0.22 Score=51.45 Aligned_cols=93 Identities=17% Similarity=0.100 Sum_probs=73.9
Q ss_pred CCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEeccc
Q 011620 317 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (481)
Q Consensus 317 ~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~ 394 (481)
+.|.+..+.++... .++.+||.+|.+..+..+.+.|++..+ +..+..+|+++++.+|.+......+|+.+|+|+|..
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~-~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG-AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 46777777666543 466899999999999999999987642 145888999999999999999999999999999986
Q ss_pred ccccCCCCCCCEEEEec
Q 011620 395 MTRGMDVEGVNNVVNYD 411 (481)
Q Consensus 395 l~~Gidi~~~~~vI~~~ 411 (481)
.- =.-++++..||..+
T Consensus 250 Av-FaP~~~LgLIIvdE 265 (665)
T PRK14873 250 AV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eE-EeccCCCCEEEEEc
Confidence 43 23556778887755
No 285
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.85 E-value=0.12 Score=47.41 Aligned_cols=41 Identities=15% Similarity=0.044 Sum_probs=27.8
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 66 ~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
+..+.-++|.|++|+|||...+..+.+.... .+.+++|++-
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ---HGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cCceEEEEEc
Confidence 3446778999999999998766544443332 1446888763
No 286
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.83 E-value=0.018 Score=58.03 Aligned_cols=83 Identities=19% Similarity=0.156 Sum_probs=56.3
Q ss_pred CCCchhhHHHHHhhhCC----CCCCC--CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 011620 49 SSLFPVQVAVWQETIGP----GLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~----~~~~~--~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (481)
..+...|.+|+..+.++ +-+|+ .++|-..-|.||-.+....|.+...++. .++|++.-+..|--...+++.
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGR---KrAlW~SVSsDLKfDAERDL~ 339 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGR---KRALWFSVSSDLKFDAERDLR 339 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhccc---ceeEEEEeccccccchhhchh
Confidence 36788898888766643 12343 3677777777777766665666666542 369999999999888888888
Q ss_pred HhccccCceEEEe
Q 011620 123 AIAPAVGLSVGLA 135 (481)
Q Consensus 123 ~~~~~~~~~v~~~ 135 (481)
..... ++.|..+
T Consensus 340 DigA~-~I~V~al 351 (1300)
T KOG1513|consen 340 DIGAT-GIAVHAL 351 (1300)
T ss_pred hcCCC-Cccceeh
Confidence 76543 5555443
No 287
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.77 E-value=0.13 Score=44.52 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=17.1
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 011620 70 RDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~ 89 (481)
.++++.+|+|+|||.+....
T Consensus 49 P~liisGpPG~GKTTsi~~L 68 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCL 68 (333)
T ss_pred CceEeeCCCCCchhhHHHHH
Confidence 67999999999999986553
No 288
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.75 E-value=0.5 Score=48.72 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=49.7
Q ss_pred CchhhHHHHHhhhCCCCCCC-CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 51 LFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~-~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
.+.-|.+++..+...+..++ -+++.|+=|=|||.+.=+.+ ..+... ....+++|.+|+.+-++...+.+.+-....|
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~-~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg 289 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARL-AGSVRIIVTAPTPANVQTLFEFAGKGLEFLG 289 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHh-cCCceEEEeCCCHHHHHHHHHHHHHhHHHhC
Confidence 44555555544333222333 57789999999998755444 222221 1134799999999998887777766655555
Q ss_pred ce
Q 011620 130 LS 131 (481)
Q Consensus 130 ~~ 131 (481)
.+
T Consensus 290 ~~ 291 (758)
T COG1444 290 YK 291 (758)
T ss_pred Cc
Confidence 44
No 289
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.75 E-value=0.13 Score=59.82 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=44.5
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhH---HHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA---LPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~---~~i~~~l~~~~~~~~~~lil~P~~~L~~q~ 117 (481)
..+++.|++|+..++. ..++-++|.|+.|+|||.+.. -++...+. ..+.+++.++||..-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~--~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~---~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIS--TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE---SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH---hcCCeEEEEeChHHHHHHH
Confidence 3799999999998875 012456789999999998752 22222222 2356799999998766554
No 290
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.72 E-value=0.069 Score=54.49 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.8
Q ss_pred EEEECCCCchHHHHhHHHH
Q 011620 72 LCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i 90 (481)
+++.||.|+|||.++...+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999866543
No 291
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.68 E-value=0.18 Score=42.05 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=17.8
Q ss_pred CCEEEECCCCchHHHHhHHHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQ 92 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~ 92 (481)
..+++.||.|+||+..+...+..
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ 42 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARA 42 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999886664443
No 292
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.68 E-value=0.11 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=18.5
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
..+++|.||+|+|||.+.-. ++..+
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~-v~~~l 79 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKK-VFEEL 79 (394)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHH
Confidence 35799999999999997444 34433
No 293
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.65 E-value=0.076 Score=49.43 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=39.3
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
.+.+.|.+.+..++. .+.+++|+|+||||||... -+++..+... .++.+++.+=.+.+|
T Consensus 128 ~~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTll-~aL~~~i~~~-~~~~rivtiEd~~El 186 (323)
T PRK13833 128 IMTEAQASVIRSAID---SRLNIVISGGTGSGKTTLA-NAVIAEIVAS-APEDRLVILEDTAEI 186 (323)
T ss_pred CCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHH-HHHHHHHhcC-CCCceEEEecCCccc
Confidence 466778877766665 4578999999999999863 4444444321 223467776666665
No 294
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.64 E-value=0.36 Score=50.07 Aligned_cols=83 Identities=12% Similarity=0.209 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcC-CcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cccccCCCCCCCEEE
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l~~Gidi~~~~~vI 408 (481)
.+.++++.+|+..-+...++.+.+.. ..++++..++|+++..+|...++...+|+.+|+|+|. .+...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 45689999999999999988887653 2358899999999999999999999999999999996 444567788899888
Q ss_pred EecCC
Q 011620 409 NYDKP 413 (481)
Q Consensus 409 ~~~~p 413 (481)
+....
T Consensus 363 IDEaH 367 (630)
T TIGR00643 363 IDEQH 367 (630)
T ss_pred Eechh
Confidence 76543
No 295
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.51 E-value=0.16 Score=47.15 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=38.6
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
.+.+.|.+.+..++. .+.+++|+|+||||||... .+++..+... .+..+++.+-...++
T Consensus 116 ~~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTll-~al~~~i~~~-~~~~ri~tiEd~~El 174 (299)
T TIGR02782 116 IMTAAQRDVLREAVL---ARKNILVVGGTGSGKTTLA-NALLAEIAKN-DPTDRVVIIEDTREL 174 (299)
T ss_pred CCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHH-HHHHHHhhcc-CCCceEEEECCchhh
Confidence 455666666666554 4678999999999999863 3344444331 123467777777665
No 296
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.43 E-value=0.077 Score=50.88 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.2
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+++.||.|+|||..+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 368999999999987655
No 297
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.42 E-value=0.16 Score=47.13 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=24.3
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
++.+++.||+|+|||..+.. +...+.. .+..+.++.
T Consensus 156 ~~gl~L~G~~G~GKThLa~A-ia~~l~~---~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAA-IANELAK---KGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH---cCCCEEEEE
Confidence 46799999999999998554 4444443 233455553
No 298
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.41 E-value=0.5 Score=44.34 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=30.8
Q ss_pred CchhhHHHHHhhhCCCCCC-CCEEEECCCCchHHHHhHHHHH
Q 011620 51 LFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~-~~~iv~~~tGsGKT~~~~~~i~ 91 (481)
.+|||..+|..+.....+- ..+++.||.|+|||..+...+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~ 43 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQ 43 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHH
Confidence 3789999999888653222 3488999999999998766443
No 299
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.39 E-value=0.47 Score=44.61 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=12.8
Q ss_pred EEEECCCCchHHHHhH
Q 011620 72 LCINSPTGSGKTLSYA 87 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~ 87 (481)
+++.||+|+|||..+.
T Consensus 46 lll~G~~G~GKT~la~ 61 (316)
T PHA02544 46 LLHSPSPGTGKTTVAK 61 (316)
T ss_pred EEeeCcCCCCHHHHHH
Confidence 4458999999998644
No 300
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.39 E-value=0.12 Score=51.74 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=16.3
Q ss_pred CEEEECCCCchHHHHhHHHH
Q 011620 71 DLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i 90 (481)
.+++.||.|+|||..+...+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999866533
No 301
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.38 E-value=0.061 Score=52.15 Aligned_cols=42 Identities=26% Similarity=0.430 Sum_probs=28.6
Q ss_pred CchhhHHHHHhhhCCCCCCCC-EEEECCCCchHHHHhHHHHHHHHHh
Q 011620 51 LFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLSN 96 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~-~iv~~~tGsGKT~~~~~~i~~~l~~ 96 (481)
+.+.|...+..+++ .... ++|.||||||||.+. ..++..+..
T Consensus 242 ~~~~~~~~~~~~~~---~p~GliLvTGPTGSGKTTTL-Y~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLN---RPQGLILVTGPTGSGKTTTL-YAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHh---CCCeEEEEeCCCCCCHHHHH-HHHHHHhcC
Confidence 36777777776665 2233 678999999999983 445555543
No 302
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.35 E-value=0.24 Score=49.07 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.3
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 011620 70 RDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~ 89 (481)
..++++||+|+|||..+...
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34799999999999986653
No 303
>PRK06921 hypothetical protein; Provisional
Probab=94.30 E-value=0.21 Score=45.45 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=28.8
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~ 117 (481)
+.++++.|++|+|||..+.. +...+... .+..++++.. ..+..++
T Consensus 117 ~~~l~l~G~~G~GKThLa~a-ia~~l~~~--~g~~v~y~~~-~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTA-AANELMRK--KGVPVLYFPF-VEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHhhh--cCceEEEEEH-HHHHHHH
Confidence 56799999999999987544 45544432 1345666654 4444443
No 304
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.29 E-value=0.67 Score=45.65 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=25.5
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
+.+++.||+|+|||..+. ++.+.+... .++.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~-~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQN-EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHh-CCCCeEEEEEH
Confidence 468999999999998744 344444432 23446777764
No 305
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.21 E-value=0.093 Score=55.00 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.9
Q ss_pred EEEECCCCchHHHHhHH
Q 011620 72 LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~ 88 (481)
+++.||.|+|||.++..
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999998665
No 306
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.21 E-value=0.24 Score=48.70 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=24.8
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
+.+++.||+|+|||..+. ++...+... +.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~---~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES---GGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc---CCCEEEeeH
Confidence 568999999999998744 355554432 446777764
No 307
>PTZ00293 thymidine kinase; Provisional
Probab=94.20 E-value=0.1 Score=45.00 Aligned_cols=39 Identities=18% Similarity=0.072 Sum_probs=26.4
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~ 111 (481)
|.=-++.||+++|||.-.+..+..+. ..+.+++++.|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~----~ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFT----YSEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHH----HcCCceEEEEecc
Confidence 44457899999999976555433332 2344689988875
No 308
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.18 E-value=0.2 Score=48.75 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=42.5
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHH-HHHHHHHHHHHhccccCce
Q 011620 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD-LALQVKDVFAAIAPAVGLS 131 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~-L~~q~~~~~~~~~~~~~~~ 131 (481)
.++.|+.|||||.+....++..+... .++.+++++-++.. +..-+..++.......|+.
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~-~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~ 63 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN-KKQQNILAARKVQNSIRDSVFKDIENLLSIEGIN 63 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc-CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCCh
Confidence 57899999999999888777776664 13457888888887 4445667777665554543
No 309
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.16 E-value=0.17 Score=50.58 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=16.3
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 011620 70 RDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~ 89 (481)
.-+++.||.|+|||.++...
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~l 58 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRIL 58 (509)
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 34789999999999886653
No 310
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.15 E-value=0.032 Score=61.62 Aligned_cols=96 Identities=23% Similarity=0.379 Sum_probs=76.9
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccC-----------hHHHHHHHHHHhcCCceEEEecccccccCC
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-----------QSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-----------~~~r~~~~~~f~~g~~~vLi~t~~l~~Gid 400 (481)
.-..++|++.+..+.....++.+....+ +..+.|.+. ...+.+++..|..-++++|++|.++.+|+|
T Consensus 292 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d 369 (1606)
T KOG0701|consen 292 TLSGIIFVDQRYTAYVLLELLREIFSND--PLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVD 369 (1606)
T ss_pred hhhheeecccchHHHHHHHHHHHhhccC--cceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcc
Confidence 3467999999999999998887754322 222333322 223677888899999999999999999999
Q ss_pred CCCCCEEEEecCCCChhhHHHHHhhhhcC
Q 011620 401 VEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (481)
Q Consensus 401 i~~~~~vI~~~~p~s~~~~~Q~~GR~~R~ 429 (481)
++.++.++.++.|.....|.|..||+-+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 370 VPKCNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhhhhheeccCcchHHHHHHhhcccccc
Confidence 99999999999999999999999998664
No 311
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.14 E-value=0.3 Score=48.96 Aligned_cols=78 Identities=8% Similarity=0.115 Sum_probs=63.3
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEe
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~ 410 (481)
.++++||.+|.+.-+..+.+.|++..+ ..+..+|++++..+|.+......+|+.+|+|+|...-. ..++++..||+.
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~--~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVD 100 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFG--SQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVD 100 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhC--CcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEE
Confidence 356899999999999999999976532 56788999999999999888888999999999975332 346678888876
Q ss_pred c
Q 011620 411 D 411 (481)
Q Consensus 411 ~ 411 (481)
+
T Consensus 101 E 101 (505)
T TIGR00595 101 E 101 (505)
T ss_pred C
Confidence 5
No 312
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.13 E-value=0.23 Score=48.28 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=16.5
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 011620 70 RDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~ 89 (481)
..++++||.|+|||.++...
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 34889999999999987653
No 313
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.13 E-value=0.98 Score=45.82 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=43.0
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (481)
.+..++..|==.|||.... +++..+... ..|.++++.+|.+..++...+++...+.
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s-~~Gi~IgytAH~~~ts~~vF~eI~~~le 309 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT-FRGIKIGYTAHIRKATEPVFEEIGARLR 309 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh-CCCCEEEEEcCcHHHHHHHHHHHHHHHh
Confidence 5667888899999999866 555544432 3466899999999999999988877654
No 314
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.05 E-value=0.34 Score=50.57 Aligned_cols=78 Identities=6% Similarity=0.118 Sum_probs=63.9
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEec
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~ 411 (481)
+.++||.+|++..+..+.+.+++.. +..+..+||+++..+|.+......+|+.+|+|+|...-. ..+.++..||..+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 5689999999999999999997742 267889999999999998888888999999999974322 4566788888765
Q ss_pred C
Q 011620 412 K 412 (481)
Q Consensus 412 ~ 412 (481)
.
T Consensus 267 e 267 (679)
T PRK05580 267 E 267 (679)
T ss_pred C
Confidence 3
No 315
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.12 Score=52.42 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.1
Q ss_pred EEEECCCCchHHHHhHHHH
Q 011620 72 LCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i 90 (481)
+++.||.|+|||.++...+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999876643
No 316
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.96 E-value=0.17 Score=47.89 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=24.0
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
++.+++.||+|+|||.+....+.. +.. .+.++.+++
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~---~g~~V~lIt 241 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLK---QNRTVGFIT 241 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH---cCCeEEEEe
Confidence 456789999999999987665543 322 233565555
No 317
>PRK04195 replication factor C large subunit; Provisional
Probab=93.95 E-value=0.24 Score=49.50 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
.+.+++.||+|+|||..+-.
T Consensus 39 ~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999986543
No 318
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.90 E-value=0.34 Score=48.45 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=17.4
Q ss_pred CEEEECCCCchHHHHhHHHHHHHH
Q 011620 71 DLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
-+++.||+|+|||.++.. +...+
T Consensus 38 a~Lf~GppGtGKTTlA~~-lA~~l 60 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL-IAMAV 60 (504)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHH
Confidence 359999999999998655 34344
No 319
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.89 E-value=0.17 Score=46.99 Aligned_cols=46 Identities=22% Similarity=0.053 Sum_probs=31.4
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHH
Q 011620 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 66 ~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~ 115 (481)
+-.++-+.|.+|+|+|||..++..+..... .+.+++|+..-..+..
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~----~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQK----AGGTAAFIDAEHALDP 97 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEEcccchhHH
Confidence 334566889999999999987765555443 2446888866554444
No 320
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.87 E-value=0.14 Score=47.73 Aligned_cols=45 Identities=20% Similarity=0.063 Sum_probs=31.8
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q 116 (481)
.++-+.|.+|+|+|||..++..+.+... .+.+++|+.+-..+-.+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~----~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK----LGGTVAFIDAEHALDPV 98 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCCEEEECccccHHHH
Confidence 4556789999999999887765554433 24468998876665543
No 321
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.85 E-value=0.3 Score=46.06 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=32.2
Q ss_pred CCchhhHHHHHhhhCCCCCCC---CEEEECCCCchHHHHhHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~---~~iv~~~tGsGKT~~~~~~i 90 (481)
.++|||..+|..+.+.+..++ -.++.||.|+||+..+...+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A 45 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHH
Confidence 468999999998887665553 47899999999998866533
No 322
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.82 E-value=0.18 Score=51.11 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=16.3
Q ss_pred CEEEECCCCchHHHHhHHHH
Q 011620 71 DLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i 90 (481)
-+++.||.|+|||.++...+
T Consensus 40 A~LFtGP~GvGKTTLAriLA 59 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILA 59 (700)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999876633
No 323
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.73 E-value=0.19 Score=51.16 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=17.9
Q ss_pred CCEEEECCCCchHHHHhHHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~ 91 (481)
+.+++.||.|+|||.++...+.
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999998766443
No 324
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.72 E-value=0.16 Score=48.30 Aligned_cols=29 Identities=28% Similarity=0.236 Sum_probs=21.5
Q ss_pred CCCCCCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 65 PGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 65 ~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
++..|+.++|.+|+|+|||..+.. +...+
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred EeCCCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 456789999999999999975333 44443
No 325
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.72 E-value=0.13 Score=46.02 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=37.2
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 66 ~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
+..+..++|.||+|+|||..++..+...+. .+.+++|++- .+-..|+.+.+..+.
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~----~ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQ----MGEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHH----cCCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 334677899999999999986665555443 2446888874 345556666666553
No 326
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.70 E-value=0.23 Score=50.39 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=16.8
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i 90 (481)
+-++++||.|+|||.++-..+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 447889999999999866543
No 327
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.15 Score=47.62 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=25.4
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~ 117 (481)
+.++..+|+|||||+.+-. +... ...++|-+.+..|+..|
T Consensus 246 kgvLm~GPPGTGKTlLAKA-vATE-------c~tTFFNVSsstltSKw 285 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKA-VATE-------CGTTFFNVSSSTLTSKW 285 (491)
T ss_pred ceeeeeCCCCCcHHHHHHH-HHHh-------hcCeEEEechhhhhhhh
Confidence 6799999999999986332 2211 11366666666665543
No 328
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=93.63 E-value=0.19 Score=52.61 Aligned_cols=82 Identities=21% Similarity=0.186 Sum_probs=62.7
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc--
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA-- 127 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-- 127 (481)
.+++-|.+|+... ...++|.|..|||||.+..--+.+.+.........++.++=|+..+.++.+.+..+...
T Consensus 2 ~Ln~~Q~~av~~~------~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~~~~ 75 (655)
T COG0210 2 KLNPEQREAVLHP------DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLGLPA 75 (655)
T ss_pred CCCHHHHHHHhcC------CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhCccc
Confidence 5788999986542 57799999999999999888777777765444456999999999999999998888752
Q ss_pred cC-ceEEEeec
Q 011620 128 VG-LSVGLAVG 137 (481)
Q Consensus 128 ~~-~~v~~~~~ 137 (481)
.. +.++++|+
T Consensus 76 ~~~~~v~TfHs 86 (655)
T COG0210 76 AEGLTVGTFHS 86 (655)
T ss_pred ccCcEEeeHHH
Confidence 11 45555554
No 329
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.62 E-value=0.27 Score=51.64 Aligned_cols=86 Identities=10% Similarity=0.285 Sum_probs=62.9
Q ss_pred HHHHhcCCCcEEEEcCCchhHHHHHHHHhhcC----CcceEEEEccCccChHHHHHHHHHHhcCCceEEEeccccc-ccC
Q 011620 325 ALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG----ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT-RGM 399 (481)
Q Consensus 325 ~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~-~Gi 399 (481)
.+.-...++++++.+|+..-+...++.|++.. .....+. +|+.++..++++.+++|.+|+.+|||+|+.+- .-+
T Consensus 118 sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~ 196 (1187)
T COG1110 118 SLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRF 196 (1187)
T ss_pred HHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhH
Confidence 33344456899999999988888888887653 1233444 99999999999999999999999999997543 333
Q ss_pred C-CC--CCCEEEEec
Q 011620 400 D-VE--GVNNVVNYD 411 (481)
Q Consensus 400 d-i~--~~~~vI~~~ 411 (481)
| +. ..++|+..|
T Consensus 197 e~L~~~kFdfifVDD 211 (1187)
T COG1110 197 EELSKLKFDFIFVDD 211 (1187)
T ss_pred HHhcccCCCEEEEcc
Confidence 3 22 245666544
No 330
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.62 E-value=0.22 Score=52.67 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=17.2
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i 90 (481)
.-+|+.+|.|+|||.++...+
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lA 58 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILA 58 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 347899999999999877644
No 331
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.50 E-value=0.31 Score=49.76 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.9
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+++.||.|+|||.++..
T Consensus 39 hayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 39 HAFLFTGARGVGKTSTARI 57 (576)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3468999999999998765
No 332
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.49 E-value=0.39 Score=49.66 Aligned_cols=97 Identities=9% Similarity=0.067 Sum_probs=76.9
Q ss_pred eecccCCCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceE
Q 011620 311 KLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388 (481)
Q Consensus 311 ~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 388 (481)
....+-+.|.+..++++... .++.+||.+|.+.....+.+.+..+-+ .++..+|+++++.+|.+...+..+|+.+|
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg--~~v~vlHS~Ls~~er~~~W~~~~~G~~~v 299 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG--AKVAVLHSGLSPGERYRVWRRARRGEARV 299 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC--CChhhhcccCChHHHHHHHHHHhcCCceE
Confidence 34455667788877777644 467899999999999988888876533 78899999999999999999999999999
Q ss_pred EEecccccccCCCCCCCEEEEe
Q 011620 389 LVSSDAMTRGMDVEGVNNVVNY 410 (481)
Q Consensus 389 Li~t~~l~~Gidi~~~~~vI~~ 410 (481)
+|+|.++- -.-++++..||..
T Consensus 300 VIGtRSAl-F~Pf~~LGLIIvD 320 (730)
T COG1198 300 VIGTRSAL-FLPFKNLGLIIVD 320 (730)
T ss_pred EEEechhh-cCchhhccEEEEe
Confidence 99997643 2345577777764
No 333
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.46 E-value=0.44 Score=51.29 Aligned_cols=82 Identities=11% Similarity=0.257 Sum_probs=67.5
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhc-CCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cccccCCCCCCCEEE
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l~~Gidi~~~~~vI 408 (481)
.+.+++|.+|+..-|...++.+++. ...++++..+++..+..++...++.+++|+.+|+|+|. .+...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4568999999999999999888764 23347788899999999999999999999999999997 444567888899888
Q ss_pred EecC
Q 011620 409 NYDK 412 (481)
Q Consensus 409 ~~~~ 412 (481)
+...
T Consensus 579 IDEa 582 (926)
T TIGR00580 579 IDEE 582 (926)
T ss_pred eecc
Confidence 7553
No 334
>PRK09354 recA recombinase A; Provisional
Probab=93.45 E-value=0.32 Score=45.72 Aligned_cols=44 Identities=23% Similarity=0.098 Sum_probs=31.6
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~ 115 (481)
.++-+.|.+|+|+|||..++..+.+... .+.+++|+..-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~----~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQK----AGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEECCccchHH
Confidence 3556789999999999987776655443 2457888887666554
No 335
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.38 E-value=0.14 Score=45.42 Aligned_cols=53 Identities=21% Similarity=0.143 Sum_probs=34.7
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.+..++|.|++|+|||...+-.+.+.+.+. +.++++++-. +-.+++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~---ge~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF---GEKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH---T--EEEEESS-S-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc---CCcEEEEEec-CCHHHHHHHHHHc
Confidence 356789999999999998766566555541 3358888743 3345566666655
No 336
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.25 E-value=0.31 Score=49.45 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=17.2
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i 90 (481)
..+++.+|.|+|||.++...+
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458899999999999876643
No 337
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.25 E-value=0.36 Score=49.28 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=16.4
Q ss_pred CEEEECCCCchHHHHhHHHH
Q 011620 71 DLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i 90 (481)
-++++||.|+|||.++...+
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999876633
No 338
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.16 E-value=0.24 Score=49.96 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=17.1
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i 90 (481)
+.+++.||.|+|||..+...+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458899999999999866533
No 339
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.16 E-value=0.11 Score=46.84 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=21.0
Q ss_pred CEEEECCCCchHHHHhHHHHHHHHHhhc
Q 011620 71 DLCINSPTGSGKTLSYALPIVQTLSNRA 98 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i~~~l~~~~ 98 (481)
=++|.+|||||||.+ +.++++++.+..
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 378999999999988 455777776653
No 340
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=93.14 E-value=0.14 Score=51.73 Aligned_cols=70 Identities=24% Similarity=0.055 Sum_probs=51.5
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc--cCCccEEEEcccHHHHHHHHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~--~~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
-+-.-|+.|.+..+. .+-.++.+|+|||||++-+.++-..+.+.+ .....++++|=|..-++|+...+-.
T Consensus 378 ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eecHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 455568888776664 566799999999999998886555554441 2334599999999999997766653
No 341
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.09 E-value=0.13 Score=52.06 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=51.8
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHH-HHHHHhcc
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK-DVFAAIAP 126 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~-~~~~~~~~ 126 (481)
...|||.+.++.+-+.. -+.+.+..++-+|||.+.+..+...+... ++ .+|++.||...+.++. ..+..+..
T Consensus 16 ~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--P~-~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQD--PG-PMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeC--CC-CEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 67899998877654421 25688999999999997665544444433 33 4999999999999876 55666644
No 342
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.02 E-value=0.47 Score=42.85 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=18.7
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHhhc
Q 011620 72 LCINSPTGSGKTLSYALPIVQTLSNRA 98 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i~~~l~~~~ 98 (481)
+-+.|+|||||.+++-+ +.+.+...+
T Consensus 113 LSfHG~tGTGKN~Va~i-iA~n~~~~G 138 (344)
T KOG2170|consen 113 LSFHGWTGTGKNYVAEI-IAENLYRGG 138 (344)
T ss_pred EEecCCCCCchhHHHHH-HHHHHHhcc
Confidence 44699999999999877 444444443
No 343
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.98 E-value=0.6 Score=44.71 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=15.7
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
+.+++.||+|+|||.++..
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARI 55 (355)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999987554
No 344
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.98 E-value=0.33 Score=49.71 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=17.0
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i 90 (481)
..+++.||.|+|||.++...+
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 457999999999999866533
No 345
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.98 E-value=0.3 Score=41.83 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=26.5
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHh
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~ 86 (481)
.+.+.|.+.+...+. .+..+++.+|||+|||...
T Consensus 9 ~~~~~~~~~l~~~v~---~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVE---ARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHHH
Confidence 566777777766554 4678999999999999863
No 346
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.97 E-value=0.55 Score=47.38 Aligned_cols=92 Identities=15% Similarity=0.299 Sum_probs=69.5
Q ss_pred HHHHHHHHHhc-CCCcEEEEcCCchhHHHHHHHHhhc-CCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccc-c
Q 011620 320 PLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM-T 396 (481)
Q Consensus 320 ~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l-~ 396 (481)
...++..+... .+..+...+|+.--|+.-+..+.+. .+.++.+.++.|.+....|.++++...+|+.+++|+|..+ .
T Consensus 298 vVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ 377 (677)
T COG1200 298 VVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ 377 (677)
T ss_pred HHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh
Confidence 33344444433 4668999999976665555555432 2334899999999999999999999999999999999755 4
Q ss_pred ccCCCCCCCEEEEec
Q 011620 397 RGMDVEGVNNVVNYD 411 (481)
Q Consensus 397 ~Gidi~~~~~vI~~~ 411 (481)
..+++.++..||+..
T Consensus 378 d~V~F~~LgLVIiDE 392 (677)
T COG1200 378 DKVEFHNLGLVIIDE 392 (677)
T ss_pred cceeecceeEEEEec
Confidence 679999999888754
No 347
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.91 E-value=1.2 Score=42.95 Aligned_cols=35 Identities=26% Similarity=0.174 Sum_probs=23.1
Q ss_pred CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
.+++.+|+|+|||.++...+...... .+.++.+++
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~---~G~~V~Lit 259 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH---MGKSVSLYT 259 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh---cCCeEEEec
Confidence 47789999999999977755544222 233455554
No 348
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.86 E-value=0.76 Score=39.37 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=16.4
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 011620 70 RDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~ 89 (481)
..+++.||+|+|||..+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~ 34 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALAL 34 (188)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45889999999999876553
No 349
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.86 E-value=0.47 Score=45.12 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=22.6
Q ss_pred CCCCCCCCEEEECCCCchHHHHhHHHHHHHHHh
Q 011620 64 GPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (481)
Q Consensus 64 ~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~ 96 (481)
-++-.|+..+|.+|.|+|||..+- .+.+.+..
T Consensus 164 ~PIGkGQR~lIvgppGvGKTTLaK-~Ian~I~~ 195 (416)
T PRK09376 164 APIGKGQRGLIVAPPKAGKTVLLQ-NIANSITT 195 (416)
T ss_pred cccccCceEEEeCCCCCChhHHHH-HHHHHHHh
Confidence 355678999999999999996533 34444433
No 350
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.86 E-value=0.63 Score=42.31 Aligned_cols=47 Identities=17% Similarity=-0.000 Sum_probs=32.0
Q ss_pred HhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 60 ~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
+.++..+..+.-+++.|.||.|||..++-.+.+..... +..++|++.
T Consensus 10 D~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~---~~~vly~Sl 56 (259)
T PF03796_consen 10 DRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNG---GYPVLYFSL 56 (259)
T ss_dssp HHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT---SSEEEEEES
T ss_pred HHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhc---CCeEEEEcC
Confidence 34454444566788999999999998877666666543 346888874
No 351
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.81 E-value=0.091 Score=47.82 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=26.8
Q ss_pred chhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHH
Q 011620 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~ 88 (481)
++..++....++..+..+.++++.||+|+|||..+..
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 3445555555555555688999999999999997654
No 352
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.79 E-value=0.64 Score=46.53 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.6
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+++.||.|+|||.++..
T Consensus 37 hayLf~Gp~G~GKTt~Ar~ 55 (535)
T PRK08451 37 HAYLFSGLRGSGKTSSARI 55 (535)
T ss_pred eeEEEECCCCCcHHHHHHH
Confidence 3458999999999988665
No 353
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.71 E-value=0.41 Score=46.86 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.8
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+++.||+|+|||..+-.
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4789999999999987543
No 354
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.71 E-value=0.25 Score=50.49 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=17.1
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i 90 (481)
..++++||.|+|||.++...+
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHH
Confidence 348899999999999876643
No 355
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.67 E-value=0.44 Score=48.87 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.3
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 011620 70 RDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~ 89 (481)
..+++.||.|+|||.++...
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34689999999999986653
No 356
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.61 E-value=0.7 Score=43.57 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=29.3
Q ss_pred CchhhHHHHHhhhCCCCC-CCCEEEECCCCchHHHHhHHHH
Q 011620 51 LFPVQVAVWQETIGPGLF-ERDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~-~~~~iv~~~tGsGKT~~~~~~i 90 (481)
++|||..+|..+.....+ ...+++.||.|+||+..+...+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 478999999887763111 2457899999999999876543
No 357
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=0.094 Score=47.52 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
..++++.+|||||||+.+-
T Consensus 97 KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eccEEEECCCCCcHHHHHH
Confidence 4679999999999998644
No 358
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.57 E-value=0.74 Score=46.75 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=34.6
Q ss_pred cCCcEEEeC-ChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhc
Q 011620 171 SAVDILVAT-PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (481)
Q Consensus 171 ~~~~I~v~T-~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~ 225 (481)
.+-+-+|+. |+++.+.+.+.+..+ -++++||+|.+..+..++=...+++.+
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHHHhhc
Confidence 333555555 899999888755433 289999999997766555555555544
No 359
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.54 E-value=0.27 Score=45.75 Aligned_cols=41 Identities=24% Similarity=0.170 Sum_probs=31.7
Q ss_pred CCchhhHHHHHhhhCCCCCC---CCEEEECCCCchHHHHhHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~---~~~iv~~~tGsGKT~~~~~~i 90 (481)
.++|||...+..+...+..+ .-.++.||.|+||+..+...+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a 46 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFS 46 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH
Confidence 57899999998877655444 358899999999998765533
No 360
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.49 E-value=0.3 Score=54.49 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=45.9
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (481)
.++++|.|+-|||||.+...-++..+..+.. ..+++++|-|+.-+.++.+.+...+.
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~-~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGVP-PSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCCC-CCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 5789999999999999988777777765433 34799999999999988887765543
No 361
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.48 E-value=0.41 Score=43.42 Aligned_cols=37 Identities=24% Similarity=0.139 Sum_probs=26.9
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
.+.-++|.|++|+|||...+..+.+.+. .+.+++|++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~----~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS----RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh----CCCcEEEEE
Confidence 3566889999999999986665554443 344688887
No 362
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.48 E-value=0.24 Score=44.40 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=18.2
Q ss_pred CCCCCCCEEEECCCCchHHHH
Q 011620 65 PGLFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 65 ~~~~~~~~iv~~~tGsGKT~~ 85 (481)
++..|+.+++.+|.|+|||..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHH
Confidence 456789999999999999964
No 363
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.45 E-value=0.67 Score=51.16 Aligned_cols=81 Identities=11% Similarity=0.221 Sum_probs=65.6
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhc-CCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cccccCCCCCCCEEE
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l~~Gidi~~~~~vI 408 (481)
.+.+++|.+|+..-+..+++.+.+. ...++.+..+++..+..++.++++..++|+.+|+|+|. .+...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999999988763 33346788889999999999999999999999999996 444456677888888
Q ss_pred Eec
Q 011620 409 NYD 411 (481)
Q Consensus 409 ~~~ 411 (481)
+..
T Consensus 728 IDE 730 (1147)
T PRK10689 728 VDE 730 (1147)
T ss_pred Eec
Confidence 654
No 364
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.39 E-value=0.37 Score=49.47 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=17.2
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i 90 (481)
..+++.||.|+|||.++...+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 567999999999999866543
No 365
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.36 E-value=0.25 Score=46.62 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=27.9
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
.+.+++|.||||||||.. +-+++..+ ....+++.+-.+.++
T Consensus 161 ~~~nilI~G~tGSGKTTl-l~aLl~~i----~~~~rivtiEd~~El 201 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTM-SKTLISAI----PPQERLITIEDTLEL 201 (344)
T ss_pred cCCeEEEECCCCccHHHH-HHHHHccc----CCCCCEEEECCCccc
Confidence 468999999999999985 23344333 233467777677665
No 366
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.34 E-value=0.58 Score=45.34 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=37.6
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeec
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~ 137 (481)
.+..+.+.||||+|||.+....+........... -.++.+.+.... ..+.+..++...|+++.....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~-v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~~ 256 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADK-VALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIKD 256 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCe-EEEEecCCcchh--HHHHHHHHHHHcCCceecCCC
Confidence 3456889999999999986654443332221111 244445553332 334455555556776655544
No 367
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.32 E-value=0.3 Score=44.47 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=36.8
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011620 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (481)
-.++.++|.+++|||||...+-.+...+. .+.++++++-. +...++.+.+..+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~----~ge~vlyvs~~-e~~~~l~~~~~~~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAR----EGEPVLYVSTE-ESPEELLENARSFGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHh----cCCcEEEEEec-CCHHHHHHHHHHcCC
Confidence 34788999999999999885554444443 34567777754 444556666666544
No 368
>PRK05973 replicative DNA helicase; Provisional
Probab=92.19 E-value=0.28 Score=43.53 Aligned_cols=57 Identities=16% Similarity=0.089 Sum_probs=37.3
Q ss_pred hCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 63 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 63 ~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
...+..|.-++|.|++|+|||..++..+.+... .|.+++|++--.. .+|+.+.+..+
T Consensus 58 ~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~----~Ge~vlyfSlEes-~~~i~~R~~s~ 114 (237)
T PRK05973 58 FSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK----SGRTGVFFTLEYT-EQDVRDRLRAL 114 (237)
T ss_pred cCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh----cCCeEEEEEEeCC-HHHHHHHHHHc
Confidence 334455677899999999999987665554443 2446888763322 45566666655
No 369
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.13 E-value=2.3 Score=38.73 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=17.6
Q ss_pred CCEEEECCCCchHHHHhHHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~ 91 (481)
..+.+.+++|+|||..+...+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5788999999999997665433
No 370
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.09 E-value=0.1 Score=46.62 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=12.5
Q ss_pred EEEECCCCchHHHH
Q 011620 72 LCINSPTGSGKTLS 85 (481)
Q Consensus 72 ~iv~~~tGsGKT~~ 85 (481)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999986
No 371
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.07 E-value=0.61 Score=45.01 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=17.0
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i 90 (481)
..+++.||.|+|||..+...+
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA 57 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFA 57 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 458999999999998866533
No 372
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.01 E-value=0.23 Score=51.25 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.8
Q ss_pred CEEEECCCCchHHHHhHHH
Q 011620 71 DLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~ 89 (481)
.+++.||.|+|||.++...
T Consensus 42 AYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4689999999999986653
No 373
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.98 E-value=0.63 Score=45.90 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=33.8
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc-ccHHHHHHHHHHHHHhccccCceEEEe
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-PTRDLALQVKDVFAAIAPAVGLSVGLA 135 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~-P~~~L~~q~~~~~~~~~~~~~~~v~~~ 135 (481)
+.-+.+.||||+|||.+....+.......+. .++.++. -+-.+. ..+.+..++...|+.+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~--~kV~LI~~Dt~Rig--A~EQLr~~AeilGVpv~~~ 319 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGA--SKVALLTTDSYRIG--GHEQLRIYGKILGVPVHAV 319 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCC--CeEEEEeCCccchh--HHHHHHHHHHHhCCCeecc
Confidence 4557899999999999977655433332211 1344443 221111 2345555555456555433
No 374
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.90 E-value=0.76 Score=43.20 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=15.6
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+++.||+|+|||.++..
T Consensus 39 ~~~ll~G~~G~GKt~~~~~ 57 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALA 57 (319)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3589999999999987543
No 375
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.68 E-value=0.76 Score=49.43 Aligned_cols=80 Identities=10% Similarity=0.262 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhc-CCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cccccCCCCCCCEEE
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l~~Gidi~~~~~vI 408 (481)
+++.+.|.+|+.--|+.-++.++++ .+..+++..++.-.+.++..++++..++|+.+|+|+|. .++.+|-+.++..+|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 4568999999988887777777654 34558888999999999999999999999999999995 777889999999988
Q ss_pred Ee
Q 011620 409 NY 410 (481)
Q Consensus 409 ~~ 410 (481)
+.
T Consensus 722 ID 723 (1139)
T COG1197 722 ID 723 (1139)
T ss_pred Ee
Confidence 74
No 376
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.52 E-value=0.46 Score=42.21 Aligned_cols=52 Identities=10% Similarity=0.006 Sum_probs=33.4
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.+..+++.+++|+|||..++..+...+. ++.++++++... -..+..+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g~~~~yi~~e~-~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ----NGYSVSYVSTQL-TTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh----CCCcEEEEeCCC-CHHHHHHHHHHh
Confidence 4677899999999999985554443332 344688888443 334555555544
No 377
>PRK04328 hypothetical protein; Provisional
Probab=91.52 E-value=0.39 Score=43.33 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=34.4
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.+..++|.+++|+|||..++..+.+.+.+ +.+++|++ +.+-..++.+.+..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~----ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 46778999999999998766555544433 44577776 3334445556666553
No 378
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.42 E-value=0.74 Score=43.38 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=18.1
Q ss_pred CCC-EEEECCCCchHHHHhHHHHH
Q 011620 69 ERD-LCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 69 ~~~-~iv~~~tGsGKT~~~~~~i~ 91 (481)
... +++.||+|+|||.++...+-
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~ 46 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAK 46 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHH
Confidence 345 89999999999998666443
No 379
>PRK12608 transcription termination factor Rho; Provisional
Probab=91.41 E-value=0.66 Score=43.92 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=28.3
Q ss_pred hhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHh
Q 011620 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (481)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~ 96 (481)
+.-.++++.+. ++-.|++.+|.||.|+|||..... ++..+..
T Consensus 118 ~~~~RvID~l~-PiGkGQR~LIvG~pGtGKTTLl~~-la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVA-PIGKGQRGLIVAPPRAGKTVLLQQ-IAAAVAA 159 (380)
T ss_pred chhHhhhhhee-ecCCCceEEEECCCCCCHHHHHHH-HHHHHHh
Confidence 44455665533 556789999999999999986433 4444433
No 380
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.40 E-value=0.42 Score=49.05 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.6
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..++++||.|+|||.++..
T Consensus 40 hayLf~Gp~G~GKtt~A~~ 58 (614)
T PRK14971 40 HAYLFCGPRGVGKTTCARI 58 (614)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3478999999999996555
No 381
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.40 E-value=0.72 Score=46.54 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.1
Q ss_pred CEEEECCCCchHHHHhHHHH
Q 011620 71 DLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i 90 (481)
-+++.||.|+|||.++...+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lA 59 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILA 59 (527)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999998866533
No 382
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=91.36 E-value=0.38 Score=53.38 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=46.3
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhc-cCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.+++++|.|..|||||++...-++..+...+ ..-.++|++|-|++-+..+.+.+..-
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 3679999999999999998888888887742 33347999999999998888776543
No 383
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.35 E-value=1.7 Score=45.15 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=67.3
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCC----cceEEEEccCccChHHHHHHHHHHhcC--------CceEEEeccccccc
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFREG--------KIQVLVSSDAMTRG 398 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g--------~~~vLi~t~~l~~G 398 (481)
-+..+|+|++|+...+.+....+..+- ...+-..+-.. +..+-.+++.+|.++ -.-+-||-...++|
T Consensus 560 Vp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr-~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEG 638 (945)
T KOG1132|consen 560 VPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPR-SKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEG 638 (945)
T ss_pred cccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccC-CccchHHHHHHHHHHhhCccccceEEEEEecccccCC
Confidence 345699999999888888665543210 00111111111 333444555555432 12234666889999
Q ss_pred CCCCC--CCEEEEecCCCC--------------------------------------hhhHHHHHhhhhcCCCCCcEEEE
Q 011620 399 MDVEG--VNNVVNYDKPAY--------------------------------------IKTYIHRAGRTARAGQLGRCFTL 438 (481)
Q Consensus 399 idi~~--~~~vI~~~~p~s--------------------------------------~~~~~Q~~GR~~R~~~~g~~i~~ 438 (481)
+|+.+ .+.||..++|.. ...+-|.+||+.|..++-.++++
T Consensus 639 lDFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l 718 (945)
T KOG1132|consen 639 LDFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVIL 718 (945)
T ss_pred CCccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeE
Confidence 99975 677898887711 12345899999998777666667
Q ss_pred EeC
Q 011620 439 LHK 441 (481)
Q Consensus 439 ~~~ 441 (481)
+|.
T Consensus 719 ~D~ 721 (945)
T KOG1132|consen 719 CDD 721 (945)
T ss_pred eec
Confidence 764
No 384
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.21 E-value=0.75 Score=44.95 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=23.8
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
..+++.|++|+|||.++...+. ++.. .+.++++++
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~-~L~~---~g~kV~lV~ 130 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLAR-YFKK---KGLKVGLVA 130 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHH---cCCeEEEec
Confidence 3578899999999998766543 3433 234566665
No 385
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.18 E-value=1.4 Score=40.34 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=23.8
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
+-+++.+|+|+|||.+....+... .. .+.+++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~---~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KK---QGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hh---cCCEEEEEe
Confidence 446788999999999877655433 22 234677665
No 386
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.09 E-value=0.24 Score=46.59 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=26.5
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
.+.+++|+|+||||||.. +-+++..+. ...+++.+=.+.++
T Consensus 159 ~~~nili~G~tgSGKTTl-l~aL~~~ip----~~~ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTF-TNAALREIP----AIERLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHHHH-HHHHHhhCC----CCCeEEEecCCCcc
Confidence 468999999999999986 333444432 23456665444444
No 387
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.06 E-value=0.71 Score=45.57 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=16.9
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i 90 (481)
..+++.||+|+|||.++...+
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 457899999999999866533
No 388
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.01 E-value=0.45 Score=42.73 Aligned_cols=44 Identities=14% Similarity=-0.088 Sum_probs=30.8
Q ss_pred hhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 62 ~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
++..+..|+-++|.|++|+|||...+-.+.+.+... +..++|++
T Consensus 6 ~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~---g~~vly~s 49 (242)
T cd00984 6 LTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQ---GKPVLFFS 49 (242)
T ss_pred hhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCceEEEe
Confidence 344445577889999999999988666555554431 44688887
No 389
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.74 E-value=0.61 Score=42.40 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=28.8
Q ss_pred HHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 43 l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
+.++|+ .+.|.+.+..++. ..+..++|.++||||||.+. ..++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 445553 5567776665553 11345889999999999874 3344443
No 390
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.73 E-value=0.84 Score=41.20 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=32.6
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
+.+++.+|+|+||++.+-..+-+ . + ..+|-+.+..|+..|.-+-.++
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATE------A-n-STFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATE------A-N-STFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhh------c-C-CceEEeehHHHHHHHhccHHHH
Confidence 34899999999999864332221 1 1 4888889999988776555544
No 391
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.66 E-value=0.39 Score=45.71 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=19.4
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~ 95 (481)
+.-++|+||||||||.+. ..++..+.
T Consensus 134 ~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 567899999999999874 33555543
No 392
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=90.61 E-value=1 Score=44.53 Aligned_cols=53 Identities=17% Similarity=0.084 Sum_probs=34.3
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
..+.-+++.+++|+|||...+..+..... .+.+++|+..- +-..|+.....++
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~----~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAK----NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHh----cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 34566889999999999986654443322 23468888754 3445666555544
No 393
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.60 E-value=1.1 Score=43.20 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=15.7
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+++.||+|+|||..+..
T Consensus 40 ~~~L~~G~~G~GKt~~a~~ 58 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARI 58 (367)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999987554
No 394
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=90.48 E-value=0.52 Score=47.78 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.0
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
.-+++.||.|+|||.++..
T Consensus 39 hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3478999999999998665
No 395
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.43 E-value=2.7 Score=38.64 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=39.1
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhh-ccC-CccEEEEccc-----------HHHHHHHHHHHHHhccccCceEEEee
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNR-AVR-CLRALVVLPT-----------RDLALQVKDVFAAIAPAVGLSVGLAV 136 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~-~~~-~~~~lil~P~-----------~~L~~q~~~~~~~~~~~~~~~v~~~~ 136 (481)
+-+++.||+|||||-. +.++.+.+.-. .++ ....++=.++ -.|+.++.+.++.+....|.=|.++-
T Consensus 178 RliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred eEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4478899999999964 55555544211 111 1124444444 34555556666667666565565555
Q ss_pred cCCc
Q 011620 137 GQSS 140 (481)
Q Consensus 137 ~~~~ 140 (481)
....
T Consensus 257 DEVE 260 (423)
T KOG0744|consen 257 DEVE 260 (423)
T ss_pred HHHH
Confidence 4433
No 396
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=90.42 E-value=0.46 Score=49.83 Aligned_cols=74 Identities=20% Similarity=0.191 Sum_probs=54.5
Q ss_pred CCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011620 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (481)
+...+++-|.+|+..-.. .....|.+|+|+|||-.+.- ++..+..+ .+..+++|++.+.....|..+.+.+...
T Consensus 735 n~v~ft~~qveai~sg~q----pgltmvvgppgtgktd~avq-il~~lyhn-~p~qrTlivthsnqaln~lfeKi~~~d~ 808 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQ----PGLTMVVGPPGTGKTDVAVQ-ILSVLYHN-SPNQRTLIVTHSNQALNQLFEKIMALDV 808 (1320)
T ss_pred chhccCHHHHHHHHhcCC----CCceeeecCCCCCCcchhhh-hhhhhhhc-CCCcceEEEEecccchhHHHHHHHhccc
Confidence 344667889888654333 56789999999999998766 44444333 4566899999999999998888776543
No 397
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=90.41 E-value=0.24 Score=47.97 Aligned_cols=57 Identities=21% Similarity=0.199 Sum_probs=39.1
Q ss_pred CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeec
Q 011620 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~ 137 (481)
+++|.||||+|||.+++.|.+-.. +..++|+=|.-++........+.. |-+|.++..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~------~~s~vv~D~Kge~~~~t~~~r~~~----G~~V~v~nP 57 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW------PGSVVVLDPKGENFELTSEHRRAL----GRKVFVFDP 57 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC------CCCEEEEccchhHHHHHHHHHHHc----CCeEEEEcC
Confidence 468999999999999877654321 235888889988887655555443 445555543
No 398
>PF12846 AAA_10: AAA-like domain
Probab=90.39 E-value=0.39 Score=44.68 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=27.2
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
.+++|.|+||+|||.+... ++..+.. .+..++++=|..+.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~-l~~~~~~---~g~~~~i~D~~g~~ 41 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKN-LLEQLIR---RGPRVVIFDPKGDY 41 (304)
T ss_pred CeEEEECCCCCcHHHHHHH-HHHHHHH---cCCCEEEEcCCchH
Confidence 5789999999999988664 4433333 24467777565443
No 399
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=90.35 E-value=2.3 Score=43.43 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=32.4
Q ss_pred cCCcEEEeC-ChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhc
Q 011620 171 SAVDILVAT-PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (481)
Q Consensus 171 ~~~~I~v~T-~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~ 225 (481)
...+-+|+. |+++.+.+++.+.- + -++.+||+|.+....-++=...+++.+
T Consensus 482 GHRRTYVGAMPGkiIq~LK~v~t~---N-PliLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 482 GHRRTYVGAMPGKIIQCLKKVKTE---N-PLILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred ccceeeeccCChHHHHHHHhhCCC---C-ceEEeehhhhhCCCCCCChHHHHHHhc
Confidence 334555554 89999999875532 2 289999999987543333344444444
No 400
>PHA00350 putative assembly protein
Probab=90.31 E-value=0.71 Score=44.24 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=17.7
Q ss_pred EEEECCCCchHHHHhHH-HHHHHHH
Q 011620 72 LCINSPTGSGKTLSYAL-PIVQTLS 95 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~-~i~~~l~ 95 (481)
.++.|.+|||||+.++. .++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 47899999999998765 3444443
No 401
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=90.11 E-value=0.33 Score=48.54 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=36.1
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.++++.||||||||..+++|.+- .. ++ .++|.=|.-+|.......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll---~~--~~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL---NY--PG-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH---hc--cC-CEEEEECCCcHHHHHHHHHHHC
Confidence 36999999999999999877652 21 12 4888889988877666555544
No 402
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.10 E-value=2.1 Score=42.37 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=61.9
Q ss_pred CchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCc
Q 011620 79 GSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGI 158 (481)
Q Consensus 79 GsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (481)
.+.|--. +..++.... ...+.++||.|.|+.-++++.+.+... ++++..+||+.+..+....+.
T Consensus 322 ~~~K~~~-l~~lL~~~~--~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~--------- 385 (519)
T KOG0331|consen 322 ETAKLRK-LGKLLEDIS--SDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLK--------- 385 (519)
T ss_pred HHHHHHH-HHHHHHHHh--ccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHH---------
Confidence 4444433 333444444 234568999999999999888888765 578999999987665533221
Q ss_pred cCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEE
Q 011620 159 CYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iVi 203 (481)
......+.|+|+|. +.. .++++.++++||-
T Consensus 386 --------~FreG~~~vLVATd------VAa-RGLDi~dV~lVIn 415 (519)
T KOG0331|consen 386 --------GFREGKSPVLVATD------VAA-RGLDVPDVDLVIN 415 (519)
T ss_pred --------hcccCCcceEEEcc------ccc-ccCCCccccEEEe
Confidence 11234589999992 222 4577888888774
No 403
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.07 E-value=2.3 Score=41.49 Aligned_cols=59 Identities=20% Similarity=0.172 Sum_probs=32.2
Q ss_pred CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc-c-cHHHHHHHHHHHHHhccccCceEEEe
Q 011620 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-P-TRDLALQVKDVFAAIAPAVGLSVGLA 135 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~-P-~~~L~~q~~~~~~~~~~~~~~~v~~~ 135 (481)
.+++.+++|+|||.++...+...... .+.+++++. . .+.-+ .+++..++...++++...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~---~g~kV~lV~~D~~R~~a---~~QL~~~a~~~gvp~~~~ 161 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK---QGKKVLLVACDLYRPAA---IEQLKVLGQQVGVPVFAL 161 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh---CCCeEEEEeccccchHH---HHHHHHHHHhcCCceEec
Confidence 47789999999999977655442212 133565554 2 22222 223333333346665543
No 404
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.00 E-value=0.52 Score=45.02 Aligned_cols=39 Identities=15% Similarity=-0.031 Sum_probs=24.4
Q ss_pred hhHHHHHhhhCCCCCC---CCEEEECCCCchHHHHhHHHHHH
Q 011620 54 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQ 92 (481)
Q Consensus 54 ~Q~~a~~~~~~~~~~~---~~~iv~~~tGsGKT~~~~~~i~~ 92 (481)
.|.++...+.+.+..+ .-.++.||.|+||+..+...+..
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~ 64 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARF 64 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3444444443333333 34889999999999886654433
No 405
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=89.95 E-value=0.4 Score=41.80 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=23.8
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEccc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~ 110 (481)
..+++|.|+||+|||.+....+...+.........+.++=+.
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 458999999999999986665555554333344444444443
No 406
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=89.93 E-value=0.97 Score=38.41 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=22.5
Q ss_pred chhhHHHHHhhhCC--CCCCCCEEEECCCCchHHHHhHHHHHHHHHhh
Q 011620 52 FPVQVAVWQETIGP--GLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (481)
Q Consensus 52 ~~~Q~~a~~~~~~~--~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~ 97 (481)
|..|.+.+...+.. ...++.++|.|+.|+|||...- .+...+...
T Consensus 5 R~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~-~~~~~~~~~ 51 (185)
T PF13191_consen 5 REEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLR-ALLDRLAER 51 (185)
T ss_dssp -HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHH-HHHHHHHhc
Confidence 44555555555521 2234679999999999998633 344444443
No 407
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.91 E-value=0.84 Score=46.45 Aligned_cols=146 Identities=17% Similarity=0.198 Sum_probs=75.8
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEE-cccHHHHHHHHHHHHHhccccCceEEEe---------
Q 011620 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-LPTRDLALQVKDVFAAIAPAVGLSVGLA--------- 135 (481)
Q Consensus 66 ~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil-~P~~~L~~q~~~~~~~~~~~~~~~v~~~--------- 135 (481)
+..|+.+.+.+|.|+|||.++. ++.+++.. ..| ++++= .|-+++-.++.+ +.....+.+-...
T Consensus 491 i~pGe~vALVGPSGsGKSTias--LL~rfY~P-tsG-~IllDG~~i~~~~~~~lr---~~Ig~V~QEPvLFs~sI~eNI~ 563 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIAS--LLLRFYDP-TSG-RILLDGVPISDINHKYLR---RKIGLVGQEPVLFSGSIRENIA 563 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHH--HHHHhcCC-CCC-eEEECCeehhhcCHHHHH---HHeeeeeccceeecccHHHHHh
Confidence 3457889999999999999754 34444442 122 23221 465555555444 2211112222221
Q ss_pred ecCC-chHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCC----CcccCCccEEEEecchhhh
Q 011620 136 VGQS-SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR----GFTLEHLCYLVVDETDRLL 210 (481)
Q Consensus 136 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~----~~~~~~~~~iViDE~H~~~ 210 (481)
+|.. ...+++....+ ..+..++...++.+.+-.|+.-+..+.--.+.+ .-.+.+...+|+|||-..+
T Consensus 564 YG~~~~t~e~i~~AAk--------~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSAL 635 (716)
T KOG0058|consen 564 YGLDNATDEEIEAAAK--------MANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSAL 635 (716)
T ss_pred cCCCCCCHHHHHHHHH--------HhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhc
Confidence 2211 11222221111 122344455566666666666543321111100 0125678899999999998
Q ss_pred hHhHHhHHHHHHHhcc
Q 011620 211 REAYQAWLPTVLQLTR 226 (481)
Q Consensus 211 ~~~~~~~~~~i~~~~~ 226 (481)
+......++..+....
T Consensus 636 DaeSE~lVq~aL~~~~ 651 (716)
T KOG0058|consen 636 DAESEYLVQEALDRLM 651 (716)
T ss_pred chhhHHHHHHHHHHhh
Confidence 8888877877776553
No 408
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=89.89 E-value=2.8 Score=40.76 Aligned_cols=60 Identities=17% Similarity=0.066 Sum_probs=35.1
Q ss_pred CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc--cHHHHHHHHHHHHHhccccCceEEEeec
Q 011620 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP--TRDLALQVKDVFAAIAPAVGLSVGLAVG 137 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P--~~~L~~q~~~~~~~~~~~~~~~v~~~~~ 137 (481)
.+.+.|++|+|||.++...+. ++.. .+.++++++. .+.-+ .++++.++...++++.....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~---~G~kV~lV~~D~~R~aA---~eQLk~~a~~~~vp~~~~~~ 163 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR---KGFKPCLVCADTFRAGA---FDQLKQNATKARIPFYGSYT 163 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH---CCCCEEEEcCcccchhH---HHHHHHHhhccCCeEEeecC
Confidence 467899999999998666444 3332 2446776653 23322 33444555545666654443
No 409
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.78 E-value=2.5 Score=35.57 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=21.2
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
+++.+++|+|||......+.. +.. .+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~-~~~---~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALY-LKK---KGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHH---CCCcEEEEE
Confidence 578999999999986654433 322 233565554
No 410
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=89.76 E-value=0.93 Score=42.38 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=16.8
Q ss_pred CCEEEECCCCchHHHHhHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i 90 (481)
...++.||.|+||+..+...+
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~~a 47 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALCFI 47 (314)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999998765533
No 411
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.76 E-value=0.96 Score=42.76 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=38.1
Q ss_pred HHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 41 ~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
+.+.+.|+ +.+.+.+.+..++. .+.+++|.++||+|||... ..++..+ .+..+++.+-.+.++
T Consensus 155 ~~l~~~g~--~~~~~~~~L~~~v~---~~~~ili~G~tGsGKTTll-~al~~~i----~~~~riv~iEd~~El 217 (340)
T TIGR03819 155 DELVASGT--FPPGVARLLRAIVA---ARLAFLISGGTGSGKTTLL-SALLALV----APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHh---CCCeEEEECCCCCCHHHHH-HHHHccC----CCCCcEEEECCccee
Confidence 33444453 45566666655554 4578999999999999753 2233332 223356776666555
No 412
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=89.68 E-value=0.66 Score=42.73 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.8
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+.++++.||+|||||.++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 34799999999999998654
No 413
>PHA00012 I assembly protein
Probab=89.48 E-value=1.1 Score=41.35 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=20.6
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHhh
Q 011620 72 LCINSPTGSGKTLSYALPIVQTLSNR 97 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i~~~l~~~ 97 (481)
.+|.|-.|+|||+.+..-+...+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47899999999999887677666543
No 414
>PRK10867 signal recognition particle protein; Provisional
Probab=89.40 E-value=2.3 Score=41.58 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=32.8
Q ss_pred CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc--ccHHHHHHHHHHHHHhccccCceEEEe
Q 011620 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLA 135 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~--P~~~L~~q~~~~~~~~~~~~~~~v~~~ 135 (481)
-+++.+++|+|||.+....+...... .+.++++++ +.+.-+ .+++..++...++++...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~---~G~kV~lV~~D~~R~aa---~eQL~~~a~~~gv~v~~~ 162 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK---KKKKVLLVAADVYRPAA---IEQLKTLGEQIGVPVFPS 162 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh---cCCcEEEEEccccchHH---HHHHHHHHhhcCCeEEec
Confidence 46789999999999877655433222 133566654 233222 233334444446665443
No 415
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=89.36 E-value=0.61 Score=41.44 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=29.1
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~ 112 (481)
++++.|.|.||||||.+... ++..+.. ..+..++|+=|.-+
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~-ll~~l~~--~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKV-LLEELLK--KKGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEECCCCCCHHHHHHH-HHHHHHh--cCCCCEEEEcCCCc
Confidence 57899999999999998655 4545442 22345777777654
No 416
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.31 E-value=1.3 Score=44.18 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.4
Q ss_pred CEEEECCCCchHHHHhHHH
Q 011620 71 DLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~ 89 (481)
-+++.||.|+|||.++...
T Consensus 40 ayLf~Gp~G~GKTtlAr~l 58 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARIL 58 (486)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678999999999876653
No 417
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=89.22 E-value=1.1 Score=46.85 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.0
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
.++++.||+|+|||..+..
T Consensus 53 ~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARI 71 (725)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5799999999999987544
No 418
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=89.22 E-value=1.7 Score=40.73 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=32.4
Q ss_pred CchhhHHHHHhhhCCCCCC---CCEEEECCCCchHHHHhHHHHHH
Q 011620 51 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPIVQ 92 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~---~~~iv~~~tGsGKT~~~~~~i~~ 92 (481)
.+|||..+|..+.+.+..+ .-.++.||.|.||+..+...+..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ 47 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQW 47 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHH
Confidence 4789999999888766555 34779999999999887664433
No 419
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=89.21 E-value=4.5 Score=37.87 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=23.1
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
.-+.+.||+|+|||.+....+. .+.. .+.+++++.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~-~l~~---~g~~V~Li~ 149 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAH-KYKA---QGKKVLLAA 149 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHh---cCCeEEEEe
Confidence 4577899999999998665443 2322 234577665
No 420
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.21 E-value=0.58 Score=40.52 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=21.7
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEccc
Q 011620 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~ 110 (481)
++|.||||||||.+. ..++..+... .+.+++.+-..
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~--~~~~i~t~e~~ 39 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKN--KTHHILTIEDP 39 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhc--CCcEEEEEcCC
Confidence 688999999999874 3344444322 12245555443
No 421
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.20 E-value=0.51 Score=48.14 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=42.6
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeec
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~ 137 (481)
+++++.||||||||..+..|-+-.. +..++|+=|.-++........++. |-+|..+..
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~------~~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vfdP 216 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW------EDSVVVHDIKLENYELTSGWREKQ----GQKVFVWEP 216 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC------CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEeC
Confidence 5789999999999999988876432 124888889999987766666554 555555543
No 422
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.15 E-value=0.68 Score=46.32 Aligned_cols=62 Identities=18% Similarity=0.094 Sum_probs=40.9
Q ss_pred HHHhhhCC-CCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 58 VWQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 58 a~~~~~~~-~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.++.++.. +..|..++|.+|+|+|||...+..+...+. ++.+++|++ ..+-..|+.+.+..+
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~----~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA----NKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 34444532 334567899999999999976654444333 345688877 445566777777766
No 423
>PRK13531 regulatory ATPase RavA; Provisional
Probab=89.15 E-value=0.4 Score=46.99 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=28.5
Q ss_pred hhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHH
Q 011620 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~ 88 (481)
..|.+++..+......+.++++.||+|+|||..+-.
T Consensus 23 ~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAra 58 (498)
T PRK13531 23 YERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARR 58 (498)
T ss_pred cCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHHH
Confidence 356667776676667799999999999999997543
No 424
>CHL00181 cbbX CbbX; Provisional
Probab=89.11 E-value=0.83 Score=42.12 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=18.2
Q ss_pred CCCEEEECCCCchHHHHhHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~ 91 (481)
+-++++.||+|+|||..+-..+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44589999999999998766433
No 425
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=88.98 E-value=0.99 Score=38.79 Aligned_cols=57 Identities=23% Similarity=0.140 Sum_probs=35.1
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhh------ccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR------AVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~------~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.|.-.++.||+|+|||...+-.+....... ...+.+++++..-.. ..++.+.+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 366789999999999998776555555311 113457888876555 456677776664
No 426
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.92 E-value=0.34 Score=44.34 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=27.9
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
.+.++++.|+||||||... ..++..+... ..+++.+-...++
T Consensus 126 ~~~~ili~G~tGSGKTT~l-~all~~i~~~---~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLL-NALLEEIPPE---DERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHCHTT---TSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHH-HHHhhhcccc---ccceEEeccccce
Confidence 4678999999999999874 4455544432 2467776665554
No 427
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=88.78 E-value=3.6 Score=39.50 Aligned_cols=42 Identities=29% Similarity=0.208 Sum_probs=24.7
Q ss_pred EEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 011620 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 73 iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q 116 (481)
++.++.|+|||......++..+..... ...++++ ++...+.+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-GRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS---EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-CcEEEEe-cCHHHHHH
Confidence 468899999999987777766655422 2345555 65555444
No 428
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=88.69 E-value=0.96 Score=40.18 Aligned_cols=54 Identities=13% Similarity=0.002 Sum_probs=33.1
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 66 ~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
+..+..+++.+++|+|||..+...+...+.. +..+++++. .....++.+....+
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~----g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD----GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 3456788999999999998766544444432 335777764 23334444444443
No 429
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.68 E-value=1.3 Score=45.94 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=25.1
Q ss_pred ccEEEEecchhhhhHhHHhHHHHHHHhcc
Q 011620 198 LCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (481)
Q Consensus 198 ~~~iViDE~H~~~~~~~~~~~~~i~~~~~ 226 (481)
.-++|+|+.|.+.+......+..+++..+
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P 158 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAP 158 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCC
Confidence 45899999999988888888888888775
No 430
>PRK10436 hypothetical protein; Provisional
Probab=88.65 E-value=0.85 Score=44.97 Aligned_cols=41 Identities=32% Similarity=0.508 Sum_probs=26.3
Q ss_pred CchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
+.+.|.+.+..++. ..+.-++|.||||||||.+.. .++..+
T Consensus 202 ~~~~~~~~l~~~~~--~~~GliLvtGpTGSGKTTtL~-a~l~~~ 242 (462)
T PRK10436 202 MTPAQLAQFRQALQ--QPQGLILVTGPTGSGKTVTLY-SALQTL 242 (462)
T ss_pred cCHHHHHHHHHHHH--hcCCeEEEECCCCCChHHHHH-HHHHhh
Confidence 35556666655543 123458899999999999843 345544
No 431
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=88.44 E-value=0.75 Score=30.96 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.6
Q ss_pred CCCEEEECCCCchHHHH
Q 011620 69 ERDLCINSPTGSGKTLS 85 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~ 85 (481)
+...++.+++|+|||..
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34689999999999984
No 432
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=88.23 E-value=1.4 Score=39.05 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.6
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
++.+++.||+|+|||..+..
T Consensus 42 ~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56799999999999986443
No 433
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.12 E-value=0.86 Score=45.59 Aligned_cols=56 Identities=13% Similarity=0.054 Sum_probs=37.5
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 66 ~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
+-.+..++|.+++|+|||..++..+.+.+.+ .+.+++|++-- +-.+++.+.+..+.
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~---~ge~~lyvs~e-E~~~~l~~~~~~~G 73 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH---FDEPGVFVTFE-ESPQDIIKNARSFG 73 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEe-cCHHHHHHHHHHcC
Confidence 3346789999999999999866555444433 13468888743 44556666666664
No 434
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=88.10 E-value=0.23 Score=42.64 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=13.8
Q ss_pred CCCCEEEECCCCchHHHHh
Q 011620 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~ 86 (481)
.+.++++.+|+|+|||..+
T Consensus 21 G~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp CC--EEEES-CCCTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 3689999999999999863
No 435
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=87.93 E-value=0.77 Score=40.69 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=23.0
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
-+++|.|++|||||...+- ++..+... -..+++++|
T Consensus 14 fr~viIG~sGSGKT~li~~-lL~~~~~~---f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKS-LLYYLRHK---FDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHhhccc---CCEEEEEec
Confidence 4799999999999986333 44333221 124666666
No 436
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.90 E-value=0.86 Score=43.53 Aligned_cols=26 Identities=31% Similarity=0.151 Sum_probs=19.1
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~ 95 (481)
+..++|+||||||||.+. ..++..+.
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 456889999999999874 44555544
No 437
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=87.85 E-value=1.1 Score=39.71 Aligned_cols=52 Identities=15% Similarity=0.047 Sum_probs=34.9
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.+.-+++.+++|+|||..++..+...+.+ +.+++|++-.. -.+|+.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~----g~~~~y~s~e~-~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN----GEKAMYISLEE-REERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECCC-CHHHHHHHHHHc
Confidence 45678899999999998765545444432 44688876543 456666666665
No 438
>PHA02244 ATPase-like protein
Probab=87.85 E-value=0.64 Score=43.91 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=18.1
Q ss_pred CCCCCCEEEECCCCchHHHHhH
Q 011620 66 GLFERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 66 ~~~~~~~iv~~~tGsGKT~~~~ 87 (481)
+..+.++++.||||+|||..+.
T Consensus 116 l~~~~PVLL~GppGtGKTtLA~ 137 (383)
T PHA02244 116 VNANIPVFLKGGAGSGKNHIAE 137 (383)
T ss_pred HhcCCCEEEECCCCCCHHHHHH
Confidence 3457889999999999998644
No 439
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=87.83 E-value=1.2 Score=41.62 Aligned_cols=43 Identities=9% Similarity=-0.198 Sum_probs=27.4
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHh--hccCCccEEEEcccH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSN--RAVRCLRALVVLPTR 111 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~--~~~~~~~~lil~P~~ 111 (481)
+.-..|.+++|+|||...+..+...... ....+.+++|+..-.
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 3456799999999999876555433221 112344788887544
No 440
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.69 E-value=1.2 Score=41.69 Aligned_cols=57 Identities=23% Similarity=0.193 Sum_probs=36.4
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
.++.+.|..-+-.++ ..+++++++++||||||.. +.+++..+ .+..+++.+--+.++
T Consensus 126 gt~~~~~~ayL~~~i---e~~~siii~G~t~sGKTt~-lnall~~I----p~~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAI---EARKSIIICGGTASGKTTL-LNALLDFI----PPEERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHH---HcCCcEEEECCCCCCHHHH-HHHHHHhC----CchhcEEEEeccccc
Confidence 366666655443333 3578999999999999975 44444433 233467777666554
No 441
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=87.60 E-value=1.1 Score=44.62 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=26.2
Q ss_pred CchhhHHHHHhhhCCCCCCC-CEEEECCCCchHHHHhHHHHHHHH
Q 011620 51 LFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~-~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
+.+.|.+.+..++. ..+ -++|.||||||||.+.. .++..+
T Consensus 226 ~~~~~~~~l~~~~~---~~~GlilitGptGSGKTTtL~-a~L~~l 266 (486)
T TIGR02533 226 MSPELLSRFERLIR---RPHGIILVTGPTGSGKTTTLY-AALSRL 266 (486)
T ss_pred CCHHHHHHHHHHHh---cCCCEEEEEcCCCCCHHHHHH-HHHhcc
Confidence 35667777666554 223 36899999999998743 244444
No 442
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=87.47 E-value=1.2 Score=37.32 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=22.5
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhcc--CCccEEEEccc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPT 110 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~~lil~P~ 110 (481)
...++|.+++||||+..+- .+...+. .++.+.|=|..
T Consensus 22 ~~pVlI~GE~GtGK~~lA~-----~IH~~s~r~~~pfi~vnc~~ 60 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLAR-----AIHNNSPRKNGPFISVNCAA 60 (168)
T ss_dssp TS-EEEECSTTSSHHHHHH-----HHHHCSTTTTS-EEEEETTT
T ss_pred CCCEEEEcCCCCcHHHHHH-----HHHHhhhcccCCeEEEehhh
Confidence 5789999999999998533 2223322 34455555554
No 443
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=87.44 E-value=4.7 Score=41.92 Aligned_cols=92 Identities=17% Similarity=0.325 Sum_probs=61.5
Q ss_pred HHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhh
Q 011620 90 IVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169 (481)
Q Consensus 90 i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (481)
++..+.....++.+++|.|+|+..++.+.+.+... |+++..++++....+....+. ...
T Consensus 431 Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~-----------------~fr 489 (655)
T TIGR00631 431 LLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIR-----------------DLR 489 (655)
T ss_pred HHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHH-----------------HHh
Confidence 34444444456778999999999988888877765 788888888755443322111 112
Q ss_pred ccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhh
Q 011620 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 170 ~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~ 209 (481)
....+|+||| ..+. .++.+.+++++|+-+++..
T Consensus 490 ~G~i~VLV~t-----~~L~--rGfDiP~v~lVvi~Dadif 522 (655)
T TIGR00631 490 LGEFDVLVGI-----NLLR--EGLDLPEVSLVAILDADKE 522 (655)
T ss_pred cCCceEEEEc-----Chhc--CCeeeCCCcEEEEeCcccc
Confidence 2447899888 2222 4578889999988887764
No 444
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=87.37 E-value=0.61 Score=37.03 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=14.1
Q ss_pred EEEECCCCchHHHHhHH
Q 011620 72 LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~ 88 (481)
+++.||+|+|||..+-.
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 58999999999986443
No 445
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.32 E-value=0.73 Score=46.99 Aligned_cols=46 Identities=33% Similarity=0.481 Sum_probs=28.8
Q ss_pred HHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 43 l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
+.+.|| .+.|.+.+..++. ....-++|.||||||||.+. ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~--~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIH--KPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 345554 4566666655543 11345789999999999884 3355544
No 446
>PRK08727 hypothetical protein; Validated
Probab=87.29 E-value=1.5 Score=39.10 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=23.4
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
+.+++.||+|+|||..+.. +...+.. .+.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a-~~~~~~~---~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA-LCAAAEQ---AGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHH---cCCcEEEEe
Confidence 4589999999999986443 3333333 244677765
No 447
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=87.20 E-value=0.94 Score=39.57 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=26.9
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEccc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~ 110 (481)
++-+.|.+|+|+|||...+..+.+... .+.+++|+.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~----~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR----QGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEECC
Confidence 556889999999999987665544432 24467877764
No 448
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=87.12 E-value=6 Score=36.69 Aligned_cols=29 Identities=17% Similarity=0.309 Sum_probs=20.1
Q ss_pred ccEEEEecchhhhhHhHHhHHHHHHHhcc
Q 011620 198 LCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (481)
Q Consensus 198 ~~~iViDE~H~~~~~~~~~~~~~i~~~~~ 226 (481)
--..|+||.|.+........+=.+++...
T Consensus 138 ~ViFIldEfDlf~~h~rQtllYnlfDisq 166 (408)
T KOG2228|consen 138 KVIFILDEFDLFAPHSRQTLLYNLFDISQ 166 (408)
T ss_pred eEEEEeehhhccccchhhHHHHHHHHHHh
Confidence 34788999998877766665555555554
No 449
>PRK06904 replicative DNA helicase; Validated
Probab=86.94 E-value=4.8 Score=40.08 Aligned_cols=59 Identities=12% Similarity=-0.128 Sum_probs=34.1
Q ss_pred HhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 011620 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 60 ~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (481)
+.+...+..|.-++|.|.||.|||..++-.+.+.... .+..++|.+.- .-..|+...+-
T Consensus 212 D~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~---~g~~Vl~fSlE-Ms~~ql~~Rll 270 (472)
T PRK06904 212 DKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA---SEKPVLVFSLE-MPAEQIMMRML 270 (472)
T ss_pred HHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh---cCCeEEEEecc-CCHHHHHHHHH
Confidence 3344444456668889999999999766544443322 13347676532 33445554443
No 450
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=86.94 E-value=3.3 Score=36.58 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=14.7
Q ss_pred CCCEEEECCCCchHHHH
Q 011620 69 ERDLCINSPTGSGKTLS 85 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~ 85 (481)
.+.++|.||-|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 36688999999999985
No 451
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=86.89 E-value=0.76 Score=42.95 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.+.++++.||||+|||..
T Consensus 143 ~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTF 160 (308)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478999999999999985
No 452
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=86.80 E-value=1.4 Score=36.88 Aligned_cols=46 Identities=9% Similarity=-0.005 Sum_probs=31.7
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
++|.|++|||||..+...+.. .+.+++|+......-..+.+.+...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-------~~~~~~y~at~~~~d~em~~rI~~H 47 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-------LGGPVTYIATAEAFDDEMAERIARH 47 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-------cCCCeEEEEccCcCCHHHHHHHHHH
Confidence 578999999999875543322 2336888877777766666666554
No 453
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=86.79 E-value=1.4 Score=38.85 Aligned_cols=46 Identities=20% Similarity=0.110 Sum_probs=29.7
Q ss_pred HHhhhC-CCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 59 ~~~~~~-~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
++.++. -+..+.-+.|.+++|+|||..++..+..... .+.+++|+.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~----~g~~v~yi~ 54 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG----QGKKVAYID 54 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEE
Confidence 344443 2334566889999999999987665544432 244688874
No 454
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=86.79 E-value=5 Score=37.19 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=34.1
Q ss_pred CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEE
Q 011620 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGL 134 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~ 134 (481)
.+++.+-+|+|||.+... +..++.. .|.++++.+--.=-+. ..++++.+....|..+..
T Consensus 141 Vil~vGVNG~GKTTTIaK-LA~~l~~---~g~~VllaA~DTFRAa-AiEQL~~w~er~gv~vI~ 199 (340)
T COG0552 141 VILFVGVNGVGKTTTIAK-LAKYLKQ---QGKSVLLAAGDTFRAA-AIEQLEVWGERLGVPVIS 199 (340)
T ss_pred EEEEEecCCCchHhHHHH-HHHHHHH---CCCeEEEEecchHHHH-HHHHHHHHHHHhCCeEEc
Confidence 367899999999998555 4444443 2445666653221111 234455555545766655
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=86.79 E-value=1.4 Score=39.29 Aligned_cols=52 Identities=13% Similarity=0.205 Sum_probs=34.7
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.+.-++|.+++|+|||..+...+...+. .+.+++|++-... ..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~----~g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK----QGKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh----CCCEEEEEEcCCC-HHHHHHHHHHC
Confidence 3566889999999999986665544443 3446888876533 34566666655
No 456
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=86.77 E-value=2.2 Score=43.07 Aligned_cols=73 Identities=18% Similarity=0.396 Sum_probs=57.0
Q ss_pred EEEEcCCchhHHHHHHHHhhcCCc--ceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-----ccccc-CCCCCCCE
Q 011620 335 CIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-MDVEGVNN 406 (481)
Q Consensus 335 ~lVf~~s~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-----~l~~G-idi~~~~~ 406 (481)
+||++|+++-|..+++.+...+.. ++.+..+.|+.+...+. +.++.| .+|||+|+ .+..| +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999999998876532 47788999998875554 445556 89999995 45566 78888998
Q ss_pred EEEec
Q 011620 407 VVNYD 411 (481)
Q Consensus 407 vI~~~ 411 (481)
+|...
T Consensus 178 lVlDE 182 (513)
T COG0513 178 LVLDE 182 (513)
T ss_pred EEecc
Confidence 88744
No 457
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=86.68 E-value=2.6 Score=43.35 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=23.3
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHH
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQ 223 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~ 223 (481)
+.+..++|+||+..-++......+...+.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~ 509 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALK 509 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHH
Confidence 55668999999999888888777766665
No 458
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.61 E-value=1 Score=42.78 Aligned_cols=41 Identities=15% Similarity=0.309 Sum_probs=25.1
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~ 112 (481)
+..++|.||||||||.+. ..++..+... .+.+++.+-...+
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~--~~~~i~tiEdp~E 162 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKN--AAGHIITIEDPIE 162 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcC--CCCEEEEEcCChh
Confidence 467899999999999874 3344444321 1234665544433
No 459
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.57 E-value=0.54 Score=44.66 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
..++++.+|||+|||+.+-
T Consensus 226 KSNvLllGPtGsGKTllaq 244 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQ 244 (564)
T ss_pred cccEEEECCCCCchhHHHH
Confidence 4679999999999999644
No 460
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.15 E-value=2.2 Score=45.24 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccC---CccEEEEcccHHHH-HHHHHHHHHhccccCceEEEeecCCchHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVR---CLRALVVLPTRDLA-LQVKDVFAAIAPAVGLSVGLAVGQSSIAD 143 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~---~~~~lil~P~~~L~-~q~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (481)
...++++.||+|+|||..+-..+.......... +.+++.+-.+.-++ .....++...
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~------------------- 262 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEER------------------- 262 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHH-------------------
Q ss_pred HHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhh
Q 011620 144 EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210 (481)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~ 210 (481)
+...+.. ..-..-.+|++||+|.+.
T Consensus 263 ---------------------------------------l~~i~~~---~~~~~~~ILfiDEih~l~ 287 (731)
T TIGR02639 263 ---------------------------------------LKAVVSE---IEKEPNAILFIDEIHTIV 287 (731)
T ss_pred ---------------------------------------HHHHHHH---HhccCCeEEEEecHHHHh
No 461
>PRK14701 reverse gyrase; Provisional
Probab=86.11 E-value=2.5 Score=48.46 Aligned_cols=81 Identities=15% Similarity=0.294 Sum_probs=61.3
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCC---cceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccc-cCC-C--CC
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR-GMD-V--EG 403 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~-Gid-i--~~ 403 (481)
.+.+++|.+|++.-+..+.+.++.... .+..+..+||+++..++.+.++.+++|+.+|||+|+-.-. -++ + ..
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~ 200 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLK 200 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCC
Confidence 356899999999999999998887532 2467888999999999989999999999999999963221 111 1 23
Q ss_pred CCEEEEec
Q 011620 404 VNNVVNYD 411 (481)
Q Consensus 404 ~~~vI~~~ 411 (481)
++++|..+
T Consensus 201 i~~iVVDE 208 (1638)
T PRK14701 201 FDFIFVDD 208 (1638)
T ss_pred CCEEEEEC
Confidence 66666654
No 462
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=86.10 E-value=3.4 Score=39.46 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
..+.+.++|+.|.|||..
T Consensus 61 ~~~GlYl~G~vG~GKT~L 78 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTML 78 (362)
T ss_pred CCceEEEECCCCCchhHH
Confidence 357799999999999984
No 463
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=86.09 E-value=0.6 Score=36.55 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=14.1
Q ss_pred EEEECCCCchHHHHhHH
Q 011620 72 LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~ 88 (481)
++|.|++|+|||..+-.
T Consensus 2 I~I~G~~gsGKST~a~~ 18 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKE 18 (121)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999986443
No 464
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.97 E-value=1.6 Score=48.43 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=41.9
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhh-ccCCccEEEEcccHHHHHHHHHHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~-~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
...+|+|.-|||||++....++..+..+ .-...++|+||=|++-+.++.+.+++
T Consensus 10 G~~lieAsAGtGKT~ti~~~~lrll~~~~~~~~~~iLvvTFT~aAt~el~~RIr~ 64 (1087)
T TIGR00609 10 GTFLIEASAGTGKTFTIAQLYLRLLLEGGPLTVEEILVVTFTNAATEELKTRIRG 64 (1087)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCCCChhhEEEEehhHHHHHHHHHHHHH
Confidence 4689999999999999777777777654 22334799999888888777777665
No 465
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=85.97 E-value=0.81 Score=39.34 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=14.5
Q ss_pred EEEECCCCchHHHHhHHHH
Q 011620 72 LCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i 90 (481)
.++.||||+|||..++..+
T Consensus 4 ~~i~GpT~tGKt~~ai~lA 22 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALA 22 (233)
T ss_dssp EEEE-STTSSHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHH
Confidence 5789999999998866543
No 466
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=85.90 E-value=0.95 Score=46.80 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=39.8
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEee
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAV 136 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 136 (481)
.+++++.||||||||..+++|-+-.. +..++|+=|.-++........++. |-.|..+.
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~------~gS~VV~DpKGE~~~~Ta~~R~~~----G~~V~~Fn 196 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTF------KGSVIALDVKGELFELTSRARKAS----GDAVFKFA 196 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcC------CCCEEEEeCCchHHHHHHHHHHhC----CCEEEEec
Confidence 35799999999999999987765322 124888889888877655544443 54554443
No 467
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=85.79 E-value=1.2 Score=39.37 Aligned_cols=48 Identities=23% Similarity=0.135 Sum_probs=30.8
Q ss_pred HHhhhC-CCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEccc
Q 011620 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 59 ~~~~~~-~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~ 110 (481)
++.++. -+..|.-+.+.+++|+|||..++..+.+.+.. +.+++|+.-.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~----~~~v~yi~~e 60 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN----GKKVIYIDTE 60 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEECC
Confidence 344443 23345668899999999999876655544432 3467777644
No 468
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.77 E-value=0.57 Score=37.82 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.8
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
++++.||+|+|||..+-.
T Consensus 1 ~vlL~G~~G~GKt~l~~~ 18 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARE 18 (139)
T ss_dssp EEEEEESSSSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 478999999999987443
No 469
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=85.67 E-value=0.69 Score=44.94 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=20.9
Q ss_pred hhCCCCCCCCEEEECCCCchHHHHhHH
Q 011620 62 TIGPGLFERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 62 ~~~~~~~~~~~iv~~~tGsGKT~~~~~ 88 (481)
++..+..++++++.+|+|+|||..+-.
T Consensus 187 l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 187 ILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 344444588999999999999987643
No 470
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=85.66 E-value=2.8 Score=43.99 Aligned_cols=43 Identities=21% Similarity=0.121 Sum_probs=30.8
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
.+.-+.+.+|+|+|||..++..+..... .+.+++|+..-..+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~----~G~~v~yId~E~t~~ 101 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQA----AGGVAAFIDAEHALD 101 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEECCccchh
Confidence 3556789999999999987665554432 345688888766655
No 471
>PHA00729 NTP-binding motif containing protein
Probab=85.53 E-value=2.1 Score=37.53 Aligned_cols=20 Identities=30% Similarity=0.145 Sum_probs=16.8
Q ss_pred CCEEEECCCCchHHHHhHHH
Q 011620 70 RDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~ 89 (481)
.++++.|++|+|||..+...
T Consensus 18 ~nIlItG~pGvGKT~LA~aL 37 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKV 37 (226)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 47899999999999876653
No 472
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=85.41 E-value=0.88 Score=46.55 Aligned_cols=62 Identities=23% Similarity=0.369 Sum_probs=47.4
Q ss_pred HHHHhcCCceEEEecccccccCCCCCCC--------EEEEecCCCChhhHHHHHhhhhcCCCC-CcEEEEE
Q 011620 378 LKAFREGKIQVLVSSDAMTRGMDVEGVN--------NVVNYDKPAYIKTYIHRAGRTARAGQL-GRCFTLL 439 (481)
Q Consensus 378 ~~~f~~g~~~vLi~t~~l~~Gidi~~~~--------~vI~~~~p~s~~~~~Q~~GR~~R~~~~-g~~i~~~ 439 (481)
-++|-.|+..|-|-+...+-||.+..-. +=|-+.+|||.+.-+|..||++|.++. +.-++|+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFl 920 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFL 920 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEE
Confidence 4568889999988899999999987533 234467999999999999999997653 3333333
No 473
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=85.39 E-value=1.8 Score=39.43 Aligned_cols=39 Identities=13% Similarity=-0.170 Sum_probs=25.0
Q ss_pred CCchhhHHHHHhhhCCCCCCC-CEEEECCCCchHHHHhHH
Q 011620 50 SLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~-~~iv~~~tGsGKT~~~~~ 88 (481)
.+.+.+.+++..+...+..+. .+++.||+|+|||..+-.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 455555666655433333344 578999999999986443
No 474
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=85.35 E-value=1.4 Score=42.43 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=18.6
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
..+++|.||+|+|||.+.-. ++..+
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~-~~~~l 64 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKY-VMKEL 64 (365)
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHH
Confidence 36799999999999987543 44444
No 475
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=85.19 E-value=1.7 Score=41.02 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=21.8
Q ss_pred hHHHHHhhhCCCCCC---CCEEEECCCCchHHHHhHHH
Q 011620 55 QVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 55 Q~~a~~~~~~~~~~~---~~~iv~~~tGsGKT~~~~~~ 89 (481)
|..++..+...+..+ .-.++.||.|+|||..+...
T Consensus 11 q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~l 48 (329)
T PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWL 48 (329)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 444444433333333 34689999999999876553
No 476
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=85.13 E-value=0.54 Score=45.45 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=16.8
Q ss_pred CCCCCEEEECCCCchHHHH
Q 011620 67 LFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~ 85 (481)
..+.++++.+|+|||||..
T Consensus 196 AGgHnLl~~GpPGtGKTml 214 (490)
T COG0606 196 AGGHNLLLVGPPGTGKTML 214 (490)
T ss_pred hcCCcEEEecCCCCchHHh
Confidence 4578999999999999985
No 477
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.12 E-value=1.6 Score=39.93 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.++.++++||+|+|||..
T Consensus 32 ~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp CTEEEEEESSTTSSHHHH
T ss_pred cCCcEEEECCCCCchhHH
Confidence 367899999999999986
No 478
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=85.06 E-value=0.93 Score=39.39 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=17.8
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHh
Q 011620 72 LCINSPTGSGKTLSYALPIVQTLSN 96 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i~~~l~~ 96 (481)
.+|.||+|||||. |...+.+.+..
T Consensus 5 qvVIGPPgSGKsT-Yc~g~~~fls~ 28 (290)
T KOG1533|consen 5 QVVIGPPGSGKST-YCNGMSQFLSA 28 (290)
T ss_pred eEEEcCCCCCccc-hhhhHHHHHHH
Confidence 4789999999994 66666655543
No 479
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=85.04 E-value=2.2 Score=42.41 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=17.7
Q ss_pred cCCccEEEEecchhhhhHhHHhHH
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWL 218 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~ 218 (481)
...+++.||||+|++....|...+
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALL 140 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALL 140 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHh
Confidence 345789999999988666665443
No 480
>PHA02535 P terminase ATPase subunit; Provisional
Probab=84.90 E-value=9.5 Score=38.53 Aligned_cols=86 Identities=19% Similarity=0.146 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
.+++...+.|.+.-...+.+||++=+.. -...+.-++.-.=-+|||+.+..-++..... .|...+++.|++..
T Consensus 122 ~~s~~~~~~l~~~~~~~l~~YQ~~W~~~----~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~---~G~nqiflSas~~Q 194 (581)
T PHA02535 122 DISDEQTEKLIEAFLDSLFDYQKHWYRA----GLHHRTRNILKSRQIGATYYFAREALEDALL---TGRNQIFLSASKAQ 194 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhC----ccccceeeEeeecccchHHHHHHHHHHHHHh---cCCceEEECCCHHH
Confidence 3677777777775557999999874322 1112223333444478999977666655443 24469999999999
Q ss_pred HHHHHHHHHHhcc
Q 011620 114 ALQVKDVFAAIAP 126 (481)
Q Consensus 114 ~~q~~~~~~~~~~ 126 (481)
+.+..+.+..++.
T Consensus 195 A~~f~~yi~~~a~ 207 (581)
T PHA02535 195 AHVFKQYIIAFAR 207 (581)
T ss_pred HHHHHHHHHHHHH
Confidence 9987777777754
No 481
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=84.89 E-value=4.3 Score=38.71 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=36.4
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.|.-++|-+.+|.|||...+- +...+.. .+ ++||++-- +...|+.-...++.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQ-va~~lA~---~~-~vLYVsGE-ES~~QiklRA~RL~ 143 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQ-VAARLAK---RG-KVLYVSGE-ESLQQIKLRADRLG 143 (456)
T ss_pred cccEEEEccCCCCCHHHHHHH-HHHHHHh---cC-cEEEEeCC-cCHHHHHHHHHHhC
Confidence 345688999999999987555 3333332 23 69998866 45667888888774
No 482
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=84.72 E-value=0.89 Score=41.91 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=16.7
Q ss_pred CCCEEEECCCCchHHHHhHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~ 89 (481)
++-++|.||||||||-.++-.
T Consensus 4 ~~ii~I~GpTasGKS~LAl~L 24 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHF 24 (300)
T ss_pred CcEEEEECCCccCHHHHHHHH
Confidence 345789999999999876553
No 483
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=84.71 E-value=9.4 Score=37.56 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=52.2
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhcc-CCcEEEeC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVAT 179 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~v~T 179 (481)
.+.++|.++++.-++-+++.+.+. |+++..+||+.........+ ..+.. ..+|+|||
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL------------------~~fr~~t~dIlVaT 574 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENAL------------------ADFREGTGDILVAT 574 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHH------------------HHHHhcCCCEEEEe
Confidence 446999999999888777777776 89999999998766553322 22333 57999999
Q ss_pred ChhHHHhhhcCCCcccCCccEEE
Q 011620 180 PGRLMDHINATRGFTLEHLCYLV 202 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iV 202 (481)
.- ...+++..++++||
T Consensus 575 Dv-------AgRGIDIpnVSlVi 590 (673)
T KOG0333|consen 575 DV-------AGRGIDIPNVSLVI 590 (673)
T ss_pred cc-------cccCCCCCccceee
Confidence 21 12457777887766
No 484
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.66 E-value=1.5 Score=39.06 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=24.0
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
+..+++.||+|+|||..+.. +.+.+.. .+.+++++.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a-~~~~~~~---~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHA-ACAELSQ---RGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHh---CCCeEEEEEH
Confidence 46789999999999987443 3333332 2345666644
No 485
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=84.62 E-value=2.4 Score=43.81 Aligned_cols=52 Identities=23% Similarity=0.195 Sum_probs=34.6
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHH--HHHHHHHHHHHh
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD--LALQVKDVFAAI 124 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~--L~~q~~~~~~~~ 124 (481)
..+++|.|+||+|||..+...+.+.+.. +..++++=|--. |...+...++..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~----g~~viv~DpKgD~~l~~~~~~~~~~~ 229 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR----GDVVIVIDPKGDADLKRRMRAEAKRA 229 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCCCchHHHHHHHHHHHHh
Confidence 4789999999999998875545554443 234777767654 555555555544
No 486
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=84.58 E-value=1.9 Score=40.15 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=28.9
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~ 118 (481)
|+-+-+.+|+|+|||..++..+..... .+..++++-+-..+-..+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~----~g~~~a~ID~e~~ld~~~a 98 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQK----QGGICAFIDAEHALDPEYA 98 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH----TT-EEEEEESSS---HHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhc----ccceeEEecCcccchhhHH
Confidence 344568999999999987765544332 2457888888777755433
No 487
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=84.55 E-value=1.9 Score=40.16 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=30.3
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (481)
.++|+++|+|+|||..+-+.+. ..+....+.+=+..|.+-+......++
T Consensus 163 pSmIlWGppG~GKTtlArlia~----tsk~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAS----TSKKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CceEEecCCCCchHHHHHHHHh----hcCCCceEEEEEeccccchHHHHHHHH
Confidence 5799999999999986544322 112233456666666666555444444
No 488
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.55 E-value=6.9 Score=42.88 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=20.4
Q ss_pred ccEEEEecchhhhhHhHHhHHHHHHHhc
Q 011620 198 LCYLVVDETDRLLREAYQAWLPTVLQLT 225 (481)
Q Consensus 198 ~~~iViDE~H~~~~~~~~~~~~~i~~~~ 225 (481)
.-+||+|++|.+-+......+..++...
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~ 149 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQ 149 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhC
Confidence 3489999999876566566666666654
No 489
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=84.46 E-value=0.79 Score=44.05 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
.+.+++.||+|+|||..+-
T Consensus 156 p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 490
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=84.25 E-value=1.4 Score=45.41 Aligned_cols=60 Identities=18% Similarity=0.087 Sum_probs=41.3
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecC
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~ 138 (481)
..++++.||||+|||..+.+|-+- .. +..++++=|..++........++. |-+|.++...
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL---~~---~gS~VV~DpKgEl~~~Ta~~R~~~----G~~V~vfdP~ 283 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTAL---KW---GGPLVVLDPSTEVAPMVSEHRRDA----GREVIVLDPT 283 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhh---cC---CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEeCC
Confidence 467999999999999998888642 21 224888889988877555544443 5556555543
No 491
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=84.23 E-value=0.81 Score=43.43 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=15.7
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+++.||+|+|||..+..
T Consensus 38 ~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999987554
No 492
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=84.20 E-value=1.1 Score=43.34 Aligned_cols=47 Identities=26% Similarity=0.363 Sum_probs=29.7
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~ 119 (481)
.++++|.|.||||||.+ +..++..+... +.+++|.=|.-+.....++
T Consensus 15 ~~~~li~G~~GsGKT~~-i~~ll~~~~~~---g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 15 NRHILIIGATGSGKTQA-IRHLLDQIRAR---GDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp GG-EEEEE-TTSSHHHH-HHHHHHHHHHT---T-EEEEEEETTHHHHHH--
T ss_pred hCcEEEECCCCCCHHHH-HHHHHHHHHHc---CCEEEEEECCchHHHHhcC
Confidence 57899999999999974 45566665443 4457777777666554443
No 493
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=84.10 E-value=1.6 Score=38.58 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=17.1
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.||+|+|||..+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56899999999999987554
No 494
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=84.07 E-value=8.4 Score=33.23 Aligned_cols=79 Identities=14% Similarity=0.292 Sum_probs=53.7
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCC-cceEEEEccCccChHHHHHHHHHHhcCCceEEEeccc-----cccc-CCCCC
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-MDVEG 403 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~-----l~~G-idi~~ 403 (481)
.+.+++|.+|+...+......+..... .+..+..++|+.+..+..... . +..+|+|+|.- +..+ .++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---K-RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---c-CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 455899999999999888877765531 346777888887765443332 2 56789999942 2233 56677
Q ss_pred CCEEEEecCC
Q 011620 404 VNNVVNYDKP 413 (481)
Q Consensus 404 ~~~vI~~~~p 413 (481)
++++|.....
T Consensus 144 l~~lIvDE~h 153 (203)
T cd00268 144 VKYLVLDEAD 153 (203)
T ss_pred CCEEEEeChH
Confidence 8888876543
No 495
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=83.99 E-value=0.64 Score=36.71 Aligned_cols=16 Identities=38% Similarity=0.397 Sum_probs=13.4
Q ss_pred EEEECCCCchHHHHhH
Q 011620 72 LCINSPTGSGKTLSYA 87 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~ 87 (481)
++|.|++|+|||.++-
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 5789999999998643
No 496
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=83.98 E-value=0.9 Score=38.21 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=15.5
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
.++++.+|||+|||..+-.
T Consensus 4 ~~~ll~GpsGvGKT~la~~ 22 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKA 22 (171)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3688999999999986443
No 497
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=83.93 E-value=3.6 Score=40.16 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=80.0
Q ss_pred HHhcCCCcEEEEcCCchhHHHHHHHHhhc-CCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-----ccccc-C
Q 011620 327 LQSLGEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-M 399 (481)
Q Consensus 327 l~~~~~~~~lVf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-----~l~~G-i 399 (481)
+....+ ++|+..|++.-+..-+..+.+. +-....+..+.|..++.+|..... + .+|+|+|+ -+-.| +
T Consensus 54 l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~---~--~kVfvaTPQvveNDl~~Gri 127 (542)
T COG1111 54 LRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA---K--KKVFVATPQVVENDLKAGRI 127 (542)
T ss_pred HHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh---h--CCEEEeccHHHHhHHhcCcc
Confidence 344444 8999999998888877777654 333457888999999988876553 3 47999994 23345 8
Q ss_pred CCCCCCEEEEecCCCChh--hHHHHHhhhhcCCCCCcEEEE--EeCCcchhhhhhcccccc
Q 011620 400 DVEGVNNVVNYDKPAYIK--TYIHRAGRTARAGQLGRCFTL--LHKDEVCLVGCLTPLLLC 456 (481)
Q Consensus 400 di~~~~~vI~~~~p~s~~--~~~Q~~GR~~R~~~~g~~i~~--~~~~~~~~~~~i~~~~~~ 456 (481)
|+.++.++|+.......- .|.+.+-...|...+-..+-+ -..++.+.+.++++.+.-
T Consensus 128 d~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgI 188 (542)
T COG1111 128 DLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGI 188 (542)
T ss_pred ChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCc
Confidence 999999999876554433 355665555554333222222 223556666666665543
No 498
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=83.85 E-value=4.6 Score=36.43 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=28.6
Q ss_pred cCCCCCchhhHHHHHhhhCC-CCCCCCEEEECCCCchHHHHh
Q 011620 46 MGISSLFPVQVAVWQETIGP-GLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~-~~~~~~~iv~~~tGsGKT~~~ 86 (481)
-|..+-+|.=.+.++.+-.- +.+...+++.+|||.||++.+
T Consensus 184 sgiatrnp~fnrmieqierva~rsr~p~ll~gptgagksfla 225 (531)
T COG4650 184 SGIATRNPHFNRMIEQIERVAIRSRAPILLNGPTGAGKSFLA 225 (531)
T ss_pred hcccccChHHHHHHHHHHHHHhhccCCeEeecCCCcchhHHH
Confidence 36677777766666655432 233457999999999999853
No 499
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=83.84 E-value=9.5 Score=39.15 Aligned_cols=78 Identities=23% Similarity=0.309 Sum_probs=54.7
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~ 180 (481)
+.++||.|+++..++++++.+... ++.+..++|+....+....+. .......+|+|||.
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~-----------------~Fr~G~~~VLVaTd 315 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLN-----------------RFQKGQLEILVATD 315 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEeh
Confidence 457999999999999988888765 788999999877655432211 11224579999992
Q ss_pred hhHHHhhhcCCCcccCCccEEEEecc
Q 011620 181 GRLMDHINATRGFTLEHLCYLVVDET 206 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iViDE~ 206 (481)
.+. .++++.++++||.-+.
T Consensus 316 -----v~a--rGIDip~V~~VInyd~ 334 (572)
T PRK04537 316 -----VAA--RGLHIDGVKYVYNYDL 334 (572)
T ss_pred -----hhh--cCCCccCCCEEEEcCC
Confidence 222 3577888888876544
No 500
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=83.81 E-value=3.9 Score=44.00 Aligned_cols=37 Identities=16% Similarity=-0.006 Sum_probs=25.0
Q ss_pred chhhHHHHHhhhCCCC-------C-C---CCEEEECCCCchHHHHhHH
Q 011620 52 FPVQVAVWQETIGPGL-------F-E---RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 52 ~~~Q~~a~~~~~~~~~-------~-~---~~~iv~~~tGsGKT~~~~~ 88 (481)
=-.|..|+..+.+.+. . + ..+++.||||+|||..+-.
T Consensus 568 v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~ 615 (852)
T TIGR03345 568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALA 615 (852)
T ss_pred EcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHH
Confidence 3467777776654431 1 1 1378999999999997654
Done!