Query 011620
Match_columns 481
No_of_seqs 158 out of 1716
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 11:54:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 7.4E-55 2.5E-59 426.5 37.5 372 16-460 50-426 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1E-52 3.5E-57 411.7 34.0 375 15-459 8-400 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 2.6E-52 9E-57 407.7 33.7 356 35-459 44-400 (410)
4 1xti_A Probable ATP-dependent 100.0 7.3E-51 2.5E-55 395.2 35.9 361 22-455 8-371 (391)
5 1s2m_A Putative ATP-dependent 100.0 5.3E-51 1.8E-55 397.3 34.4 353 35-457 28-380 (400)
6 3eiq_A Eukaryotic initiation f 100.0 2.4E-51 8.1E-56 401.7 31.8 358 34-459 46-404 (414)
7 3fht_A ATP-dependent RNA helic 100.0 3.2E-50 1.1E-54 393.5 30.4 362 20-456 23-394 (412)
8 3pey_A ATP-dependent RNA helic 100.0 5.3E-50 1.8E-54 389.8 29.7 358 21-455 4-370 (395)
9 1hv8_A Putative ATP-dependent 100.0 2.1E-49 7.1E-54 381.7 32.0 346 35-456 13-359 (367)
10 1fuu_A Yeast initiation factor 100.0 4.5E-51 1.5E-55 397.2 18.1 363 21-459 20-383 (394)
11 3sqw_A ATP-dependent RNA helic 100.0 4.4E-49 1.5E-53 400.0 31.6 367 35-454 28-410 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 1.2E-48 4.1E-53 396.9 32.1 367 34-453 78-460 (563)
13 2z0m_A 337AA long hypothetical 100.0 4.8E-48 1.7E-52 367.6 31.3 335 35-455 1-335 (337)
14 3fmp_B ATP-dependent RNA helic 100.0 3.9E-50 1.3E-54 399.5 16.6 354 34-456 98-461 (479)
15 3fho_A ATP-dependent RNA helic 100.0 4.8E-48 1.7E-52 385.3 18.5 355 34-459 125-488 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 3.9E-46 1.3E-50 374.6 26.7 341 35-452 28-384 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 6.4E-46 2.2E-50 369.7 27.3 341 35-453 9-354 (523)
18 3oiy_A Reverse gyrase helicase 100.0 2.9E-44 9.9E-49 350.8 28.6 341 37-455 8-376 (414)
19 4a2p_A RIG-I, retinoic acid in 100.0 5.3E-42 1.8E-46 348.4 24.2 336 47-445 4-511 (556)
20 2zj8_A DNA helicase, putative 100.0 1.2E-41 4.2E-46 353.8 26.6 334 35-444 8-389 (720)
21 2va8_A SSO2462, SKI2-type heli 100.0 3.2E-41 1.1E-45 350.9 28.7 333 35-443 15-409 (715)
22 2ykg_A Probable ATP-dependent 100.0 8E-42 2.7E-46 355.6 22.2 349 40-449 3-523 (696)
23 1wp9_A ATP-dependent RNA helic 100.0 3.1E-40 1.1E-44 330.2 30.4 322 50-444 9-477 (494)
24 2p6r_A Afuhel308 helicase; pro 100.0 2E-41 6.8E-46 351.2 22.1 336 35-444 10-390 (702)
25 4a2q_A RIG-I, retinoic acid in 100.0 5.8E-41 2E-45 352.0 23.8 339 45-444 243-751 (797)
26 3tbk_A RIG-I helicase domain; 100.0 5.6E-41 1.9E-45 340.9 22.7 340 50-450 4-515 (555)
27 4ddu_A Reverse gyrase; topoiso 100.0 6.8E-40 2.3E-44 349.3 29.7 335 45-455 74-503 (1104)
28 3l9o_A ATP-dependent RNA helic 100.0 1.3E-40 4.3E-45 355.0 23.6 329 35-442 169-597 (1108)
29 2xgj_A ATP-dependent RNA helic 100.0 3.3E-39 1.1E-43 341.3 27.6 324 44-450 81-508 (1010)
30 1gku_B Reverse gyrase, TOP-RG; 100.0 1.5E-39 5E-44 347.2 24.5 338 41-456 48-468 (1054)
31 4a2w_A RIG-I, retinoic acid in 100.0 1.8E-39 6E-44 343.9 22.0 339 46-445 244-752 (936)
32 1gm5_A RECG; helicase, replica 100.0 3.8E-39 1.3E-43 330.4 23.6 331 35-443 354-698 (780)
33 2oca_A DAR protein, ATP-depend 100.0 5.9E-39 2E-43 321.7 21.2 310 50-440 113-453 (510)
34 4f92_B U5 small nuclear ribonu 100.0 2E-38 7E-43 349.3 27.2 354 35-451 911-1317(1724)
35 4gl2_A Interferon-induced heli 100.0 7.6E-39 2.6E-43 333.3 20.2 340 50-443 7-520 (699)
36 2eyq_A TRCF, transcription-rep 100.0 1.4E-37 4.9E-42 333.6 29.9 330 35-443 588-923 (1151)
37 4f92_B U5 small nuclear ribonu 100.0 1.6E-38 5.6E-43 350.0 23.0 354 35-452 66-483 (1724)
38 4a4z_A Antiviral helicase SKI2 100.0 5.2E-38 1.8E-42 332.2 23.8 316 45-439 35-489 (997)
39 2fwr_A DNA repair protein RAD2 100.0 9.2E-38 3.1E-42 310.0 21.9 289 50-438 93-448 (472)
40 1tf5_A Preprotein translocase 100.0 3.2E-37 1.1E-41 309.6 25.9 358 45-444 79-547 (844)
41 2whx_A Serine protease/ntpase/ 100.0 3.9E-37 1.3E-41 310.1 15.4 313 35-454 157-493 (618)
42 1yks_A Genome polyprotein [con 100.0 5.7E-37 2E-41 298.9 12.5 280 66-454 5-314 (440)
43 2jlq_A Serine protease subunit 100.0 8.4E-36 2.9E-40 292.1 19.5 287 47-440 1-309 (451)
44 2fsf_A Preprotein translocase 100.0 2.2E-35 7.6E-40 295.5 21.1 351 46-444 71-585 (853)
45 1nkt_A Preprotein translocase 100.0 1.7E-34 5.9E-39 289.3 26.4 357 46-444 108-619 (922)
46 2xau_A PRE-mRNA-splicing facto 100.0 2E-35 6.9E-40 305.1 18.3 330 34-444 78-445 (773)
47 2wv9_A Flavivirin protease NS2 100.0 3.6E-35 1.2E-39 297.5 18.0 309 42-452 202-546 (673)
48 3h1t_A Type I site-specific re 100.0 2.2E-35 7.4E-40 300.6 16.2 318 50-441 178-557 (590)
49 3dmq_A RNA polymerase-associat 100.0 1.3E-34 4.4E-39 307.0 20.7 136 316-454 487-625 (968)
50 2z83_A Helicase/nucleoside tri 100.0 5.7E-35 1.9E-39 286.7 16.6 269 67-442 19-313 (459)
51 3o8b_A HCV NS3 protease/helica 100.0 3E-34 1E-38 286.1 17.5 290 50-455 217-531 (666)
52 2v6i_A RNA helicase; membrane, 100.0 1E-33 3.4E-38 275.5 20.9 270 69-440 2-288 (431)
53 1z63_A Helicase of the SNF2/RA 100.0 1.2E-33 4.2E-38 282.4 17.7 310 49-438 36-447 (500)
54 1z3i_X Similar to RAD54-like; 100.0 2.7E-30 9.4E-35 263.6 30.8 362 50-438 55-522 (644)
55 3mwy_W Chromo domain-containin 100.0 5.4E-31 1.8E-35 275.6 25.6 331 49-439 235-679 (800)
56 3fe2_A Probable ATP-dependent 100.0 2.2E-31 7.5E-36 239.6 19.2 215 15-299 22-240 (242)
57 3rc3_A ATP-dependent RNA helic 100.0 3.3E-31 1.1E-35 267.6 20.9 279 68-449 154-451 (677)
58 2oxc_A Probable ATP-dependent 100.0 1.6E-30 5.4E-35 232.1 20.3 209 15-295 17-227 (230)
59 3ber_A Probable ATP-dependent 100.0 1.5E-30 5.1E-35 234.5 19.7 199 34-296 49-247 (249)
60 2pl3_A Probable ATP-dependent 100.0 4E-30 1.4E-34 230.7 21.2 209 19-297 22-233 (236)
61 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.6E-30 8.8E-35 271.8 22.0 323 36-431 250-694 (1038)
62 1vec_A ATP-dependent RNA helic 100.0 5.3E-30 1.8E-34 225.0 20.4 195 35-294 10-205 (206)
63 3ly5_A ATP-dependent RNA helic 100.0 2.6E-30 8.9E-35 234.8 18.7 205 24-291 49-257 (262)
64 1t6n_A Probable ATP-dependent 100.0 1.6E-29 5.4E-34 224.3 22.9 197 34-294 20-218 (220)
65 3bor_A Human initiation factor 100.0 3.2E-30 1.1E-34 231.1 18.1 210 17-296 25-234 (237)
66 3iuy_A Probable ATP-dependent 100.0 4.4E-30 1.5E-34 229.2 18.5 209 15-294 12-226 (228)
67 3fmo_B ATP-dependent RNA helic 100.0 4.6E-30 1.6E-34 237.3 18.7 198 34-296 98-297 (300)
68 1wrb_A DJVLGB; RNA helicase, D 100.0 4.2E-30 1.4E-34 233.0 17.7 214 20-299 21-242 (253)
69 3dkp_A Probable ATP-dependent 100.0 2.8E-30 9.6E-35 233.1 15.8 223 14-299 17-243 (245)
70 1q0u_A Bstdead; DEAD protein, 100.0 6.2E-30 2.1E-34 226.6 17.4 205 23-298 5-213 (219)
71 1qde_A EIF4A, translation init 100.0 1E-29 3.5E-34 226.3 18.8 208 19-298 11-218 (224)
72 2gxq_A Heat resistant RNA depe 100.0 5.2E-29 1.8E-33 218.9 19.2 195 35-295 8-204 (207)
73 3jux_A Protein translocase sub 100.0 6.7E-28 2.3E-32 236.6 27.7 375 46-443 72-588 (822)
74 1c4o_A DNA nucleotide excision 99.9 5.1E-25 1.7E-29 224.4 28.2 131 319-453 424-561 (664)
75 2d7d_A Uvrabc system protein B 99.9 1E-23 3.5E-28 214.7 30.5 129 319-451 430-565 (661)
76 2vl7_A XPD; helicase, unknown 99.9 1.5E-25 5.1E-30 223.9 16.5 152 46-209 4-187 (540)
77 2hjv_A ATP-dependent RNA helic 99.9 2.1E-25 7.2E-30 187.1 14.6 150 304-456 7-156 (163)
78 2ipc_A Preprotein translocase 99.9 1.1E-23 3.9E-28 210.7 26.4 131 46-210 76-215 (997)
79 1t5i_A C_terminal domain of A 99.9 7.1E-25 2.4E-29 185.3 13.6 150 305-457 4-154 (172)
80 1fuk_A Eukaryotic initiation f 99.9 5.7E-25 1.9E-29 185.0 12.5 150 307-459 4-154 (165)
81 2jgn_A DBX, DDX3, ATP-dependen 99.9 5.6E-25 1.9E-29 188.1 11.8 155 303-460 16-171 (185)
82 2p6n_A ATP-dependent RNA helic 99.9 7.7E-25 2.6E-29 187.9 12.7 169 286-459 10-179 (191)
83 2rb4_A ATP-dependent RNA helic 99.9 1.2E-24 4E-29 185.0 12.8 151 304-457 5-162 (175)
84 3eaq_A Heat resistant RNA depe 99.9 2.2E-24 7.4E-29 188.9 14.8 146 308-456 7-152 (212)
85 3crv_A XPD/RAD3 related DNA he 99.9 2E-23 6.9E-28 209.4 18.9 152 50-211 3-187 (551)
86 3i32_A Heat resistant RNA depe 99.9 1.8E-23 6.2E-28 191.3 14.5 147 307-456 3-149 (300)
87 2yjt_D ATP-dependent RNA helic 99.8 6.5E-25 2.2E-29 185.5 0.0 148 307-457 4-152 (170)
88 4a15_A XPD helicase, ATP-depen 99.9 2E-22 6.7E-27 203.5 17.4 88 50-140 3-90 (620)
89 3b6e_A Interferon-induced heli 99.9 1E-21 3.5E-26 173.4 13.1 143 46-214 29-179 (216)
90 1rif_A DAR protein, DNA helica 99.8 3.8E-20 1.3E-24 170.1 10.0 128 50-212 113-240 (282)
91 3llm_A ATP-dependent RNA helic 99.8 6.7E-19 2.3E-23 157.0 13.2 143 48-224 59-205 (235)
92 2fz4_A DNA repair protein RAD2 99.8 4.5E-18 1.6E-22 151.3 14.4 117 50-215 93-210 (237)
93 1z5z_A Helicase of the SNF2/RA 99.7 8.5E-18 2.9E-22 152.0 10.5 125 315-442 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.5 2.9E-07 1E-11 92.9 9.2 86 38-129 136-224 (608)
95 4b3f_X DNA-binding protein smu 98.4 5.8E-07 2E-11 91.8 10.2 67 50-124 189-256 (646)
96 2gk6_A Regulator of nonsense t 98.3 6.8E-06 2.3E-10 83.4 14.4 70 48-124 178-247 (624)
97 2xzl_A ATP-dependent helicase 98.2 1.3E-05 4.5E-10 83.1 14.7 69 49-124 359-427 (802)
98 2wjy_A Regulator of nonsense t 98.2 1.4E-05 4.7E-10 82.9 13.8 69 49-124 355-423 (800)
99 3upu_A ATP-dependent DNA helic 98.2 3.2E-06 1.1E-10 82.6 7.8 73 46-121 21-94 (459)
100 3e1s_A Exodeoxyribonuclease V, 98.0 1.8E-05 6E-10 79.1 9.2 64 50-121 189-252 (574)
101 3lfu_A DNA helicase II; SF1 he 97.5 0.00014 4.8E-09 74.5 8.2 83 49-137 8-92 (647)
102 3hgt_A HDA1 complex subunit 3; 97.5 0.001 3.5E-08 60.2 12.4 126 315-448 106-243 (328)
103 1uaa_A REP helicase, protein ( 97.4 0.00033 1.1E-08 71.9 8.4 82 50-137 2-86 (673)
104 1pjr_A PCRA; DNA repair, DNA r 97.2 0.00062 2.1E-08 70.3 8.5 83 49-137 10-94 (724)
105 3vkw_A Replicase large subunit 97.2 0.00048 1.6E-08 65.4 6.1 44 70-122 162-205 (446)
106 2o0j_A Terminase, DNA packagin 96.8 0.0033 1.1E-07 59.0 8.6 71 50-126 163-233 (385)
107 1xx6_A Thymidine kinase; NESG, 96.8 0.0064 2.2E-07 51.0 9.4 39 69-111 8-46 (191)
108 2orw_A Thymidine kinase; TMTK, 96.7 0.0041 1.4E-07 52.0 7.4 39 69-111 3-41 (184)
109 3cpe_A Terminase, DNA packagin 96.7 0.0046 1.6E-07 62.2 9.0 72 50-127 163-234 (592)
110 2j9r_A Thymidine kinase; TK1, 96.6 0.0043 1.5E-07 52.7 6.9 40 69-112 28-67 (214)
111 3ec2_A DNA replication protein 96.5 0.012 3.9E-07 49.1 9.0 25 69-94 38-62 (180)
112 1a5t_A Delta prime, HOLB; zinc 96.5 0.0076 2.6E-07 55.9 8.5 38 51-88 3-43 (334)
113 3e2i_A Thymidine kinase; Zn-bi 96.3 0.0046 1.6E-07 52.4 5.2 40 69-112 28-67 (219)
114 2b8t_A Thymidine kinase; deoxy 96.2 0.002 7E-08 55.5 2.8 39 69-111 12-50 (223)
115 1w4r_A Thymidine kinase; type 96.0 0.013 4.5E-07 48.8 6.7 38 69-110 20-57 (195)
116 3te6_A Regulatory protein SIR3 96.0 0.031 1.1E-06 50.9 9.7 44 52-96 25-71 (318)
117 3u4q_A ATP-dependent helicase/ 96.0 0.0096 3.3E-07 65.3 7.5 68 50-123 10-79 (1232)
118 2orv_A Thymidine kinase; TP4A 95.7 0.012 4E-07 50.5 5.1 40 69-112 19-58 (234)
119 1l8q_A Chromosomal replication 95.5 0.24 8.3E-06 45.4 13.8 36 69-108 37-72 (324)
120 2chg_A Replication factor C sm 95.3 0.15 5.3E-06 43.4 11.2 19 70-88 39-57 (226)
121 2z4s_A Chromosomal replication 95.1 0.19 6.4E-06 48.3 12.0 39 69-109 130-168 (440)
122 2zpa_A Uncharacterized protein 94.9 0.046 1.6E-06 54.8 7.3 58 50-116 175-232 (671)
123 2gno_A DNA polymerase III, gam 94.9 0.062 2.1E-06 48.8 7.4 19 70-88 19-37 (305)
124 3u61_B DNA polymerase accessor 94.4 0.21 7.1E-06 45.8 10.1 14 197-210 105-118 (324)
125 2v1u_A Cell division control p 94.1 0.13 4.4E-06 48.4 8.1 20 69-88 44-63 (387)
126 1sxj_D Activator 1 41 kDa subu 94.0 0.081 2.8E-06 49.2 6.5 19 70-88 59-77 (353)
127 3hjh_A Transcription-repair-co 93.9 0.59 2E-05 45.2 12.3 75 321-411 372-446 (483)
128 1gm5_A RECG; helicase, replica 93.9 0.16 5.3E-06 52.5 8.7 83 331-413 416-500 (780)
129 1iqp_A RFCS; clamp loader, ext 93.8 0.088 3E-06 48.3 6.2 18 71-88 48-65 (327)
130 3vfd_A Spastin; ATPase, microt 93.6 0.39 1.3E-05 45.3 10.3 19 69-87 148-166 (389)
131 2qby_B CDC6 homolog 3, cell di 93.2 0.2 6.7E-06 47.2 7.6 20 69-88 45-64 (384)
132 2hjv_A ATP-dependent RNA helic 92.7 1.7 5.8E-05 34.9 11.7 78 101-206 35-112 (163)
133 1t6n_A Probable ATP-dependent 92.3 0.85 2.9E-05 38.8 9.9 116 333-451 83-208 (220)
134 3oiy_A Reverse gyrase helicase 91.8 0.32 1.1E-05 46.2 7.3 82 331-412 63-148 (414)
135 2w58_A DNAI, primosome compone 91.7 0.15 5.1E-06 43.0 4.3 24 70-94 55-78 (202)
136 3n70_A Transport activator; si 91.5 0.13 4.5E-06 40.8 3.5 20 68-87 23-42 (145)
137 1sxj_B Activator 1 37 kDa subu 91.5 0.53 1.8E-05 42.9 8.1 18 71-88 44-61 (323)
138 2zr9_A Protein RECA, recombina 91.3 0.13 4.6E-06 47.6 3.7 41 66-110 58-98 (349)
139 3io5_A Recombination and repai 91.1 0.23 7.8E-06 44.8 4.9 44 68-114 28-71 (333)
140 3kl4_A SRP54, signal recogniti 91.0 1.2 4.2E-05 42.3 10.1 35 70-108 98-132 (433)
141 1fuk_A Eukaryotic initiation f 90.8 3.1 0.00011 33.4 11.3 77 101-205 30-106 (165)
142 1t5i_A C_terminal domain of A 90.4 2.9 9.8E-05 33.9 10.8 78 101-206 31-108 (172)
143 1u94_A RECA protein, recombina 90.4 0.19 6.3E-06 46.7 3.8 48 59-110 51-100 (356)
144 4ddu_A Reverse gyrase; topoiso 90.3 0.45 1.5E-05 51.3 7.2 82 331-412 120-205 (1104)
145 3co5_A Putative two-component 90.2 0.11 3.6E-06 41.2 1.7 17 69-85 27-43 (143)
146 3hr8_A Protein RECA; alpha and 90.2 0.16 5.5E-06 47.0 3.1 41 68-112 60-100 (356)
147 2jgn_A DBX, DDX3, ATP-dependen 90.1 1.9 6.5E-05 35.6 9.5 77 100-204 45-121 (185)
148 3cmu_A Protein RECA, recombina 90.1 0.33 1.1E-05 55.0 6.0 43 67-113 1425-1467(2050)
149 3dm5_A SRP54, signal recogniti 89.9 1.4 4.9E-05 41.9 9.4 60 70-136 101-162 (443)
150 3eaq_A Heat resistant RNA depe 89.8 3.7 0.00013 34.7 11.3 75 101-203 31-105 (212)
151 2rb4_A ATP-dependent RNA helic 89.6 3.4 0.00012 33.5 10.6 75 101-203 34-108 (175)
152 2eyq_A TRCF, transcription-rep 88.9 1.5 5E-05 47.7 9.8 82 331-412 651-734 (1151)
153 1vma_A Cell division protein F 88.9 2.2 7.4E-05 38.5 9.5 35 70-108 105-139 (306)
154 2p6n_A ATP-dependent RNA helic 88.5 3 0.0001 34.6 9.6 76 102-205 55-130 (191)
155 2qgz_A Helicase loader, putati 88.1 0.54 1.8E-05 42.7 5.0 36 69-108 152-188 (308)
156 2zts_A Putative uncharacterize 87.8 0.53 1.8E-05 41.0 4.8 52 68-123 29-80 (251)
157 4b4t_K 26S protease regulatory 87.6 0.31 1E-05 46.3 3.1 19 69-87 206-224 (428)
158 3syl_A Protein CBBX; photosynt 87.4 0.66 2.2E-05 42.0 5.2 20 69-88 67-86 (309)
159 3ber_A Probable ATP-dependent 87.3 3.2 0.00011 36.1 9.5 119 331-453 110-237 (249)
160 2gxq_A Heat resistant RNA depe 87.2 2.4 8.1E-05 35.5 8.4 117 332-453 72-195 (207)
161 1jbk_A CLPB protein; beta barr 87.1 0.61 2.1E-05 38.4 4.6 20 69-88 43-62 (195)
162 3u4q_B ATP-dependent helicase/ 87.0 0.84 2.9E-05 49.9 6.6 48 73-122 5-52 (1166)
163 1tue_A Replication protein E1; 86.8 0.39 1.3E-05 40.3 3.0 32 56-87 45-76 (212)
164 2cvh_A DNA repair and recombin 86.7 0.69 2.3E-05 39.3 4.7 44 59-109 9-53 (220)
165 2r44_A Uncharacterized protein 86.5 0.15 5.1E-06 46.9 0.4 33 55-87 32-64 (331)
166 2w0m_A SSO2452; RECA, SSPF, un 86.5 0.91 3.1E-05 38.9 5.5 46 59-108 12-58 (235)
167 2p65_A Hypothetical protein PF 86.5 0.68 2.3E-05 38.0 4.5 20 69-88 43-62 (187)
168 2kjq_A DNAA-related protein; s 86.1 0.71 2.4E-05 36.7 4.1 20 68-87 35-54 (149)
169 2bjv_A PSP operon transcriptio 86.0 0.84 2.9E-05 40.2 5.0 18 69-86 29-46 (265)
170 2oap_1 GSPE-2, type II secreti 85.8 1.4 4.8E-05 43.0 6.8 18 68-85 259-276 (511)
171 3bh0_A DNAB-like replicative h 85.5 1.1 3.8E-05 40.7 5.7 60 58-122 57-116 (315)
172 2dr3_A UPF0273 protein PH0284; 85.0 0.82 2.8E-05 39.6 4.4 50 68-122 22-71 (247)
173 2d7d_A Uvrabc system protein B 85.0 5.3 0.00018 40.4 10.9 83 99-209 443-525 (661)
174 1p9r_A General secretion pathw 84.9 1.3 4.5E-05 41.9 6.0 33 52-86 152-184 (418)
175 3i5x_A ATP-dependent RNA helic 84.9 11 0.00038 37.1 13.2 101 80-206 319-419 (563)
176 2eyu_A Twitching motility prot 84.7 0.56 1.9E-05 41.4 3.2 21 67-87 23-43 (261)
177 3bos_A Putative DNA replicatio 84.6 0.87 3E-05 39.2 4.4 20 69-88 52-71 (242)
178 2oxc_A Probable ATP-dependent 84.5 2 6.9E-05 36.8 6.7 76 331-411 91-174 (230)
179 3hws_A ATP-dependent CLP prote 84.3 0.46 1.6E-05 44.3 2.6 20 69-88 51-70 (363)
180 1w36_B RECB, exodeoxyribonucle 84.0 1.6 5.6E-05 47.6 7.0 56 70-125 17-80 (1180)
181 3bgw_A DNAB-like replicative h 83.8 1.3 4.6E-05 42.3 5.6 48 58-109 186-233 (444)
182 3i32_A Heat resistant RNA depe 83.7 6.8 0.00023 35.1 10.0 75 101-203 28-102 (300)
183 1vec_A ATP-dependent RNA helic 83.7 4.5 0.00016 33.6 8.5 76 332-411 71-154 (206)
184 2i4i_A ATP-dependent RNA helic 83.6 7.8 0.00027 36.4 11.0 76 100-203 275-350 (417)
185 3iuy_A Probable ATP-dependent 83.4 2.6 9E-05 35.9 6.9 77 331-411 93-175 (228)
186 1c4o_A DNA nucleotide excision 83.2 8.4 0.00029 39.0 11.5 82 100-209 438-519 (664)
187 3sqw_A ATP-dependent RNA helic 83.2 15 0.0005 36.5 13.2 83 100-207 287-369 (579)
188 4a1f_A DNAB helicase, replicat 83.1 1.7 5.8E-05 39.8 5.7 48 58-109 35-82 (338)
189 3nbx_X ATPase RAVA; AAA+ ATPas 83.0 0.24 8.4E-06 48.2 0.1 32 55-86 27-58 (500)
190 4b4t_H 26S protease regulatory 82.9 1.2 3.9E-05 42.6 4.6 19 69-87 243-261 (467)
191 3bor_A Human initiation factor 82.7 2.1 7.2E-05 36.9 6.0 78 331-411 97-181 (237)
192 3fe2_A Probable ATP-dependent 82.5 3.4 0.00012 35.7 7.3 115 332-453 102-227 (242)
193 2c9o_A RUVB-like 1; hexameric 82.4 1.1 3.9E-05 43.1 4.6 21 68-88 62-82 (456)
194 4b4t_J 26S protease regulatory 82.3 1.1 3.7E-05 42.1 4.1 19 69-87 182-200 (405)
195 4b4t_M 26S protease regulatory 82.2 0.99 3.4E-05 42.9 3.9 19 69-87 215-233 (434)
196 2r2a_A Uncharacterized protein 82.1 0.71 2.4E-05 38.8 2.6 20 71-90 7-26 (199)
197 1u0j_A DNA replication protein 81.9 1.5 5E-05 38.6 4.6 49 36-87 72-122 (267)
198 2ius_A DNA translocase FTSK; n 81.8 1.2 4.1E-05 43.3 4.4 42 69-110 167-208 (512)
199 2qz4_A Paraplegin; AAA+, SPG7, 81.8 1.1 3.7E-05 39.3 3.9 19 69-87 39-57 (262)
200 2chq_A Replication factor C sm 81.6 1.4 4.7E-05 39.9 4.6 18 71-88 40-57 (319)
201 2iut_A DNA translocase FTSK; n 81.6 1.2 4.1E-05 43.8 4.4 43 69-111 214-256 (574)
202 2q6t_A DNAB replication FORK h 81.5 2.1 7.1E-05 41.1 6.0 49 58-109 189-237 (444)
203 2pl3_A Probable ATP-dependent 81.5 4.3 0.00015 34.7 7.7 119 331-454 96-223 (236)
204 3cf0_A Transitional endoplasmi 81.5 0.9 3.1E-05 41.0 3.3 20 68-87 48-67 (301)
205 1ojl_A Transcriptional regulat 81.4 1 3.5E-05 40.7 3.6 18 69-86 25-42 (304)
206 2r6a_A DNAB helicase, replicat 81.4 2.1 7.2E-05 41.2 6.0 49 58-109 192-240 (454)
207 3h4m_A Proteasome-activating n 81.4 0.97 3.3E-05 40.3 3.5 20 68-87 50-69 (285)
208 1e9r_A Conjugal transfer prote 81.2 1.3 4.5E-05 42.3 4.5 43 69-115 53-95 (437)
209 2qmh_A HPR kinase/phosphorylas 81.1 0.77 2.6E-05 38.3 2.4 19 69-87 34-52 (205)
210 3uk6_A RUVB-like 2; hexameric 81.0 1.3 4.3E-05 41.2 4.2 20 69-88 70-89 (368)
211 3ly5_A ATP-dependent RNA helic 80.9 3.5 0.00012 36.1 6.9 77 331-411 125-209 (262)
212 1g5t_A COB(I)alamin adenosyltr 80.8 2 6.8E-05 35.7 4.8 36 69-108 28-63 (196)
213 3a8t_A Adenylate isopentenyltr 80.7 0.84 2.9E-05 41.7 2.7 19 70-88 41-59 (339)
214 4b4t_L 26S protease subunit RP 80.7 1.2 4.1E-05 42.4 3.9 19 69-87 215-233 (437)
215 1xti_A Probable ATP-dependent 80.4 8.2 0.00028 35.8 9.8 108 332-442 76-193 (391)
216 1ex7_A Guanylate kinase; subst 80.3 0.87 3E-05 37.7 2.5 16 70-85 2-17 (186)
217 3vkg_A Dynein heavy chain, cyt 80.2 2.1 7.1E-05 51.0 6.3 82 35-118 873-954 (3245)
218 1kgd_A CASK, peripheral plasma 80.1 1.2 3.9E-05 36.7 3.2 18 69-86 5-22 (180)
219 4ag6_A VIRB4 ATPase, type IV s 79.9 1.9 6.3E-05 40.6 5.0 41 68-112 34-74 (392)
220 1njg_A DNA polymerase III subu 79.9 1.4 4.9E-05 37.7 4.0 19 70-88 46-64 (250)
221 1sxj_C Activator 1 40 kDa subu 79.6 0.68 2.3E-05 42.7 1.8 18 71-88 48-65 (340)
222 3t15_A Ribulose bisphosphate c 79.6 1.3 4.3E-05 39.8 3.6 19 70-88 37-55 (293)
223 3vaa_A Shikimate kinase, SK; s 79.5 1.1 3.8E-05 37.4 3.0 20 69-88 25-44 (199)
224 4fcw_A Chaperone protein CLPB; 79.5 0.33 1.1E-05 44.1 -0.4 19 70-88 48-66 (311)
225 3b9p_A CG5977-PA, isoform A; A 79.4 1 3.6E-05 40.4 3.0 19 69-87 54-72 (297)
226 1ofh_A ATP-dependent HSL prote 79.4 1.2 4.2E-05 40.1 3.5 19 69-87 50-68 (310)
227 2l8b_A Protein TRAI, DNA helic 79.3 5.1 0.00017 32.7 6.6 59 53-116 37-95 (189)
228 1d2n_A N-ethylmaleimide-sensit 79.2 0.97 3.3E-05 40.0 2.6 20 69-88 64-83 (272)
229 3exa_A TRNA delta(2)-isopenten 78.9 1.1 3.6E-05 40.5 2.8 19 70-88 4-22 (322)
230 4b4t_I 26S protease regulatory 78.7 1.6 5.5E-05 41.2 4.0 53 28-87 180-234 (437)
231 3trf_A Shikimate kinase, SK; a 78.7 1.2 4.1E-05 36.6 2.9 20 69-88 5-24 (185)
232 3tau_A Guanylate kinase, GMP k 78.6 1.2 4.3E-05 37.5 3.0 19 68-86 7-25 (208)
233 1cr0_A DNA primase/helicase; R 78.5 2.6 9E-05 37.7 5.4 49 58-109 24-72 (296)
234 3foz_A TRNA delta(2)-isopenten 78.4 1.1 3.9E-05 40.2 2.8 18 71-88 12-29 (316)
235 3cmw_A Protein RECA, recombina 78.4 1.6 5.6E-05 48.8 4.6 45 69-117 1431-1475(1706)
236 2qor_A Guanylate kinase; phosp 78.4 1.6 5.4E-05 36.7 3.6 21 66-86 9-29 (204)
237 1xwi_A SKD1 protein; VPS4B, AA 78.4 1.1 3.8E-05 40.9 2.8 19 69-87 45-63 (322)
238 3b85_A Phosphate starvation-in 78.3 1.8 6E-05 36.6 3.9 30 53-86 10-39 (208)
239 2px0_A Flagellar biosynthesis 78.1 2.2 7.6E-05 38.3 4.7 37 69-108 105-141 (296)
240 2r8r_A Sensor protein; KDPD, P 78.0 2.4 8.3E-05 36.1 4.5 24 71-94 8-31 (228)
241 3eie_A Vacuolar protein sortin 78.0 1.2 4E-05 40.7 2.9 19 69-87 51-69 (322)
242 2v1x_A ATP-dependent DNA helic 77.9 4.3 0.00015 40.5 7.1 59 332-393 84-144 (591)
243 3fht_A ATP-dependent RNA helic 77.8 10 0.00035 35.4 9.6 75 101-203 266-340 (412)
244 3lw7_A Adenylate kinase relate 77.8 0.97 3.3E-05 36.6 2.1 17 71-87 3-19 (179)
245 1oyw_A RECQ helicase, ATP-depe 77.7 4.1 0.00014 39.9 6.9 77 332-411 65-147 (523)
246 3iij_A Coilin-interacting nucl 77.6 1.9 6.4E-05 35.3 3.8 20 69-88 11-30 (180)
247 1lv7_A FTSH; alpha/beta domain 77.5 1.3 4.3E-05 38.8 2.9 19 69-87 45-63 (257)
248 1qhx_A CPT, protein (chloramph 77.4 1.1 3.7E-05 36.6 2.2 19 69-87 3-21 (178)
249 1um8_A ATP-dependent CLP prote 77.0 1.6 5.3E-05 40.9 3.5 20 69-88 72-91 (376)
250 3pey_A ATP-dependent RNA helic 77.0 12 0.0004 34.7 9.7 78 101-207 243-321 (395)
251 1zp6_A Hypothetical protein AT 76.9 1.2 4.1E-05 36.8 2.4 18 68-85 8-25 (191)
252 4akg_A Glutathione S-transfera 76.9 1.7 5.9E-05 51.0 4.4 53 35-88 890-942 (2695)
253 1lvg_A Guanylate kinase, GMP k 76.8 1.5 5.2E-05 36.6 3.1 18 69-86 4-21 (198)
254 2qp9_X Vacuolar protein sortin 76.8 1.7 5.9E-05 40.2 3.7 20 69-88 84-103 (355)
255 2ze6_A Isopentenyl transferase 76.7 1.4 4.6E-05 38.6 2.8 17 72-88 4-20 (253)
256 3pfi_A Holliday junction ATP-d 76.6 2.1 7E-05 39.3 4.2 19 69-87 55-73 (338)
257 3fmo_B ATP-dependent RNA helic 76.6 2.1 7.3E-05 38.5 4.2 117 332-455 162-289 (300)
258 3ice_A Transcription terminati 76.5 1.8 6.2E-05 40.3 3.6 32 56-88 162-193 (422)
259 1xp8_A RECA protein, recombina 76.3 2.7 9.1E-05 39.1 4.7 49 59-111 62-112 (366)
260 2gza_A Type IV secretion syste 75.8 2.4 8.2E-05 39.3 4.4 18 68-85 174-191 (361)
261 2r62_A Cell division protease 75.8 1 3.5E-05 39.7 1.8 20 69-88 44-63 (268)
262 2j41_A Guanylate kinase; GMP, 75.5 1.8 6.2E-05 36.2 3.2 20 68-87 5-24 (207)
263 1sxj_E Activator 1 40 kDa subu 75.4 2.3 7.9E-05 39.2 4.2 18 70-87 37-54 (354)
264 1q57_A DNA primase/helicase; d 75.3 3.3 0.00011 40.4 5.4 58 60-121 233-290 (503)
265 2z43_A DNA repair and recombin 75.3 3.7 0.00013 37.3 5.5 44 68-111 106-151 (324)
266 1wp9_A ATP-dependent RNA helic 75.2 20 0.00068 34.1 11.1 99 78-207 340-447 (494)
267 2db3_A ATP-dependent RNA helic 75.2 15 0.00053 34.8 10.0 73 103-203 302-374 (434)
268 3tr0_A Guanylate kinase, GMP k 75.1 1.8 6E-05 36.2 3.0 19 68-86 6-24 (205)
269 3f9v_A Minichromosome maintena 75.0 2 6.8E-05 42.9 3.8 15 71-85 329-343 (595)
270 1kag_A SKI, shikimate kinase I 74.9 1.9 6.7E-05 34.8 3.2 18 69-86 4-21 (173)
271 4gp7_A Metallophosphoesterase; 74.9 1.1 3.9E-05 36.3 1.7 18 69-86 9-26 (171)
272 2ewv_A Twitching motility prot 74.6 1.5 5.1E-05 40.9 2.6 20 68-87 135-154 (372)
273 1ly1_A Polynucleotide kinase; 74.6 1.3 4.6E-05 36.0 2.1 17 71-87 4-20 (181)
274 1y63_A LMAJ004144AAA protein; 74.5 1.9 6.4E-05 35.5 3.0 19 69-87 10-28 (184)
275 1s2m_A Putative ATP-dependent 74.4 17 0.00059 33.7 10.2 77 101-205 258-334 (400)
276 2ehv_A Hypothetical protein PH 74.4 3.8 0.00013 35.3 5.2 24 66-89 27-50 (251)
277 1hv8_A Putative ATP-dependent 74.4 11 0.00039 34.3 8.8 78 100-205 237-314 (367)
278 3jvv_A Twitching mobility prot 74.2 1.6 5.3E-05 40.5 2.6 25 69-94 123-147 (356)
279 3c8u_A Fructokinase; YP_612366 74.1 2.3 7.8E-05 35.8 3.5 19 68-86 21-39 (208)
280 3crm_A TRNA delta(2)-isopenten 74.1 1.9 6.6E-05 39.1 3.1 18 71-88 7-24 (323)
281 3ney_A 55 kDa erythrocyte memb 74.1 2 6.9E-05 35.8 3.0 17 69-85 19-35 (197)
282 1z6g_A Guanylate kinase; struc 74.1 2.2 7.5E-05 36.3 3.4 18 68-85 22-39 (218)
283 1wrb_A DJVLGB; RNA helicase, D 74.0 18 0.00063 31.0 9.6 119 332-454 100-230 (253)
284 3d8b_A Fidgetin-like protein 1 73.9 1.8 6.3E-05 40.1 3.1 20 69-88 117-136 (357)
285 2qby_A CDC6 homolog 1, cell di 73.8 2.4 8.2E-05 39.4 3.9 20 69-88 45-64 (386)
286 3nwn_A Kinesin-like protein KI 73.6 2.1 7.1E-05 39.5 3.3 34 54-87 84-123 (359)
287 3a00_A Guanylate kinase, GMP k 73.6 2.2 7.5E-05 35.1 3.2 17 70-86 2-18 (186)
288 2pt7_A CAG-ALFA; ATPase, prote 73.4 3.1 0.00011 38.0 4.4 18 68-85 170-187 (330)
289 3kb2_A SPBC2 prophage-derived 73.3 1.9 6.6E-05 34.7 2.8 17 71-87 3-19 (173)
290 2j0s_A ATP-dependent RNA helic 73.1 15 0.0005 34.4 9.3 76 102-205 277-352 (410)
291 3k1j_A LON protease, ATP-depen 72.7 1.3 4.5E-05 44.4 1.8 21 67-87 58-78 (604)
292 3d3q_A TRNA delta(2)-isopenten 72.7 2.2 7.6E-05 39.0 3.2 18 71-88 9-26 (340)
293 1ixz_A ATP-dependent metallopr 72.6 2.5 8.4E-05 36.9 3.4 17 70-86 50-66 (254)
294 1n0w_A DNA repair protein RAD5 72.6 2.4 8.2E-05 36.5 3.3 25 67-91 22-46 (243)
295 1bg2_A Kinesin; motor protein, 72.1 2.7 9.4E-05 38.2 3.6 37 51-87 54-96 (325)
296 4eun_A Thermoresistant glucoki 71.7 2.4 8.2E-05 35.4 3.0 19 69-87 29-47 (200)
297 1hqc_A RUVB; extended AAA-ATPa 71.6 1.9 6.6E-05 39.1 2.6 19 69-87 38-56 (324)
298 1knq_A Gluconate kinase; ALFA/ 71.4 1.6 5.4E-05 35.5 1.8 19 69-87 8-26 (175)
299 3t0q_A AGR253WP; kinesin, alph 71.3 2.9 9.8E-05 38.5 3.6 21 67-87 82-104 (349)
300 2x8a_A Nuclear valosin-contain 71.3 2.8 9.5E-05 37.1 3.5 17 70-86 45-61 (274)
301 2i1q_A DNA repair and recombin 71.1 3.9 0.00013 37.1 4.6 24 69-92 98-121 (322)
302 4etp_A Kinesin-like protein KA 71.0 2.8 9.5E-05 39.4 3.5 19 69-87 139-159 (403)
303 3cf2_A TER ATPase, transitiona 71.0 3.6 0.00012 42.4 4.6 55 25-86 199-255 (806)
304 2zan_A Vacuolar protein sortin 71.0 2.2 7.5E-05 40.9 2.9 19 69-87 167-185 (444)
305 3pvs_A Replication-associated 70.8 2.2 7.4E-05 40.9 2.8 19 70-88 51-69 (447)
306 2h58_A Kinesin-like protein KI 70.8 3.1 0.00011 37.9 3.7 19 69-87 79-99 (330)
307 1f9v_A Kinesin-like protein KA 70.7 2.7 9.4E-05 38.6 3.3 21 67-87 81-103 (347)
308 1goj_A Kinesin, kinesin heavy 70.6 3.1 0.00011 38.3 3.7 37 51-87 57-99 (355)
309 1v5w_A DMC1, meiotic recombina 70.6 4.4 0.00015 37.2 4.8 44 68-111 121-166 (343)
310 1kht_A Adenylate kinase; phosp 70.5 3 0.0001 34.2 3.4 19 69-87 3-21 (192)
311 1znw_A Guanylate kinase, GMP k 70.4 2.7 9.3E-05 35.3 3.1 18 68-85 19-36 (207)
312 2vvg_A Kinesin-2; motor protei 70.4 3.1 0.00011 38.2 3.6 36 51-86 66-107 (350)
313 3eph_A TRNA isopentenyltransfe 70.2 2.4 8.3E-05 39.6 2.9 18 71-88 4-21 (409)
314 2y65_A Kinesin, kinesin heavy 70.1 3.2 0.00011 38.4 3.6 37 51-87 61-103 (365)
315 3lre_A Kinesin-like protein KI 70.1 3.2 0.00011 38.3 3.6 37 51-87 82-124 (355)
316 1in4_A RUVB, holliday junction 70.1 2.6 8.9E-05 38.6 3.1 18 70-87 52-69 (334)
317 2v9p_A Replication protein E1; 70.1 3.4 0.00012 37.1 3.8 30 57-86 114-143 (305)
318 1qde_A EIF4A, translation init 69.9 5.1 0.00017 33.9 4.8 77 331-412 81-164 (224)
319 1g8p_A Magnesium-chelatase 38 69.9 1.4 4.8E-05 40.6 1.2 19 69-87 45-63 (350)
320 4a14_A Kinesin, kinesin-like p 69.9 3.3 0.00011 38.0 3.7 36 51-86 60-101 (344)
321 2zfi_A Kinesin-like protein KI 69.8 3.2 0.00011 38.4 3.6 35 53-87 68-108 (366)
322 3cm0_A Adenylate kinase; ATP-b 69.7 2 6.7E-05 35.3 2.0 20 69-88 4-23 (186)
323 1q0u_A Bstdead; DEAD protein, 69.7 3.2 0.00011 35.1 3.4 76 332-411 72-158 (219)
324 1v8k_A Kinesin-like protein KI 69.7 2.8 9.5E-05 39.4 3.2 38 51-88 131-174 (410)
325 3dc4_A Kinesin-like protein NO 69.6 2.7 9.1E-05 38.6 3.0 36 51-86 71-112 (344)
326 4a74_A DNA repair and recombin 69.5 2.3 7.7E-05 36.3 2.4 22 67-88 23-44 (231)
327 1zu4_A FTSY; GTPase, signal re 69.4 4.8 0.00017 36.5 4.7 35 70-108 106-140 (320)
328 2rhm_A Putative kinase; P-loop 69.4 1.9 6.6E-05 35.5 1.9 20 69-88 5-24 (193)
329 1zuh_A Shikimate kinase; alpha 69.3 2.8 9.4E-05 33.7 2.8 19 70-88 8-26 (168)
330 3umf_A Adenylate kinase; rossm 69.2 3.6 0.00012 34.9 3.5 20 69-88 29-48 (217)
331 3b6u_A Kinesin-like protein KI 69.2 3 0.0001 38.6 3.3 37 51-87 78-120 (372)
332 3hu3_A Transitional endoplasmi 69.1 2.5 8.5E-05 41.1 2.8 19 69-87 238-256 (489)
333 1rj9_A FTSY, signal recognitio 69.1 5.6 0.00019 35.8 5.0 36 69-108 102-137 (304)
334 1t5c_A CENP-E protein, centrom 68.9 3.1 0.00011 38.2 3.3 37 51-87 54-96 (349)
335 1aky_A Adenylate kinase; ATP:A 68.7 3.7 0.00012 34.8 3.6 20 69-88 4-23 (220)
336 3uie_A Adenylyl-sulfate kinase 68.7 2.6 8.9E-05 35.2 2.6 20 69-88 25-44 (200)
337 1c9k_A COBU, adenosylcobinamid 68.6 4.2 0.00014 33.3 3.7 45 72-124 2-46 (180)
338 3gbj_A KIF13B protein; kinesin 68.5 3.2 0.00011 38.3 3.2 35 53-87 71-111 (354)
339 3bfn_A Kinesin-like protein KI 68.5 3.2 0.00011 38.6 3.3 37 51-87 75-117 (388)
340 3pxg_A Negative regulator of g 68.4 3.6 0.00012 39.7 3.9 20 69-88 201-220 (468)
341 2nr8_A Kinesin-like protein KI 68.4 3.2 0.00011 38.3 3.3 35 53-87 82-122 (358)
342 1zak_A Adenylate kinase; ATP:A 68.4 3.8 0.00013 34.8 3.6 20 69-88 5-24 (222)
343 1s96_A Guanylate kinase, GMP k 68.2 3.2 0.00011 35.3 3.0 19 67-85 14-32 (219)
344 1iy2_A ATP-dependent metallopr 68.2 3.5 0.00012 36.5 3.5 17 70-86 74-90 (278)
345 1xjc_A MOBB protein homolog; s 67.7 5.6 0.00019 32.2 4.2 35 70-108 5-39 (169)
346 3t61_A Gluconokinase; PSI-biol 67.7 3 0.0001 34.8 2.8 18 70-87 19-36 (202)
347 1fnn_A CDC6P, cell division co 67.6 2.6 9E-05 39.3 2.6 17 71-87 46-62 (389)
348 3fb4_A Adenylate kinase; psych 67.6 3.6 0.00012 34.6 3.3 18 71-88 2-19 (216)
349 3u06_A Protein claret segregat 67.5 3.5 0.00012 38.8 3.4 18 69-86 137-156 (412)
350 2heh_A KIF2C protein; kinesin, 67.5 3.5 0.00012 38.4 3.4 38 51-88 111-154 (387)
351 1via_A Shikimate kinase; struc 67.5 3.4 0.00012 33.4 3.0 18 71-88 6-23 (175)
352 3sr0_A Adenylate kinase; phosp 67.4 3.8 0.00013 34.4 3.3 18 71-88 2-19 (206)
353 1x88_A Kinesin-like protein KI 67.2 3.1 0.00011 38.4 3.0 37 51-87 65-107 (359)
354 1gku_B Reverse gyrase, TOP-RG; 67.2 8.6 0.00029 41.4 6.7 79 331-411 98-183 (1054)
355 2v3c_C SRP54, signal recogniti 67.1 5.9 0.0002 37.7 4.9 35 70-108 100-134 (432)
356 3cf2_A TER ATPase, transitiona 67.0 5.6 0.00019 41.0 5.0 18 69-86 511-528 (806)
357 2owm_A Nckin3-434, related to 66.9 4 0.00014 38.8 3.7 35 53-87 115-155 (443)
358 2v54_A DTMP kinase, thymidylat 66.9 3.9 0.00013 34.0 3.4 19 69-87 4-22 (204)
359 1jr3_A DNA polymerase III subu 66.9 3.7 0.00013 38.1 3.5 19 70-88 39-57 (373)
360 2qt1_A Nicotinamide riboside k 66.8 2.9 0.0001 35.0 2.5 19 68-86 20-38 (207)
361 2iyv_A Shikimate kinase, SK; t 66.8 3.9 0.00013 33.4 3.2 19 70-88 3-21 (184)
362 2bdt_A BH3686; alpha-beta prot 66.8 3.3 0.00011 34.0 2.8 18 70-87 3-20 (189)
363 1gvn_B Zeta; postsegregational 66.7 2.2 7.7E-05 38.1 1.9 18 70-87 34-51 (287)
364 1ye8_A Protein THEP1, hypothet 66.5 3.4 0.00012 33.8 2.8 16 71-86 2-17 (178)
365 3b9q_A Chloroplast SRP recepto 66.4 6.3 0.00022 35.4 4.8 36 69-108 100-135 (302)
366 2c95_A Adenylate kinase 1; tra 66.4 3.8 0.00013 33.8 3.1 20 69-88 9-28 (196)
367 1tev_A UMP-CMP kinase; ploop, 66.2 4.1 0.00014 33.5 3.3 18 70-87 4-21 (196)
368 1g41_A Heat shock protein HSLU 66.1 4 0.00014 38.9 3.5 19 69-87 50-68 (444)
369 3tif_A Uncharacterized ABC tra 66.1 2.7 9.1E-05 36.3 2.1 19 67-85 29-47 (235)
370 2i3b_A HCR-ntpase, human cance 66.0 4.1 0.00014 33.7 3.2 20 69-88 1-20 (189)
371 2p5t_B PEZT; postsegregational 66.0 5.4 0.00018 34.7 4.2 20 69-88 32-51 (253)
372 3cob_A Kinesin heavy chain-lik 65.9 3.1 0.00011 38.5 2.6 19 69-87 78-98 (369)
373 2wbe_C Bipolar kinesin KRP-130 65.9 3.4 0.00012 38.3 2.9 37 51-87 77-119 (373)
374 3lnc_A Guanylate kinase, GMP k 65.7 2.7 9.1E-05 36.0 2.1 18 69-86 27-44 (231)
375 1nks_A Adenylate kinase; therm 65.7 3.6 0.00012 33.7 2.9 18 71-88 3-20 (194)
376 1ak2_A Adenylate kinase isoenz 65.6 4.5 0.00016 34.6 3.6 20 69-88 16-35 (233)
377 1nij_A Hypothetical protein YJ 65.4 4.7 0.00016 36.5 3.8 15 71-85 6-20 (318)
378 2ce7_A Cell division protein F 65.3 3.1 0.00011 40.1 2.6 19 69-87 49-67 (476)
379 1e6c_A Shikimate kinase; phosp 65.2 4.1 0.00014 32.8 3.1 19 70-88 3-21 (173)
380 1svm_A Large T antigen; AAA+ f 65.0 5 0.00017 37.3 3.9 22 65-86 165-186 (377)
381 2rep_A Kinesin-like protein KI 64.7 3.9 0.00013 37.9 3.1 37 51-87 93-134 (376)
382 1sxj_A Activator 1 95 kDa subu 64.7 3.4 0.00012 40.5 2.9 19 70-88 78-96 (516)
383 1zd8_A GTP:AMP phosphotransfer 64.7 3.4 0.00012 35.3 2.5 19 69-87 7-25 (227)
384 3dl0_A Adenylate kinase; phosp 64.6 3.7 0.00013 34.6 2.8 18 71-88 2-19 (216)
385 3pxi_A Negative regulator of g 64.4 1.5 5E-05 45.5 0.1 18 71-88 523-540 (758)
386 2cdn_A Adenylate kinase; phosp 64.3 5 0.00017 33.3 3.5 19 70-88 21-39 (201)
387 2jaq_A Deoxyguanosine kinase; 63.9 3.9 0.00013 34.0 2.8 18 71-88 2-19 (205)
388 1yks_A Genome polyprotein [con 63.7 17 0.00057 34.6 7.5 69 101-202 177-245 (440)
389 1nlf_A Regulatory protein REPA 63.6 3.6 0.00012 36.4 2.6 24 68-91 29-52 (279)
390 2plr_A DTMP kinase, probable t 63.4 4.5 0.00015 33.8 3.1 20 69-88 4-23 (213)
391 2cbz_A Multidrug resistance-as 63.4 3.2 0.00011 35.8 2.1 28 195-222 143-170 (237)
392 2vli_A Antibiotic resistance p 63.3 2.7 9.2E-05 34.3 1.6 20 69-88 5-24 (183)
393 3nwj_A ATSK2; P loop, shikimat 63.2 4.9 0.00017 35.0 3.3 20 69-88 48-67 (250)
394 2yvu_A Probable adenylyl-sulfa 63.2 3.9 0.00013 33.5 2.6 20 69-88 13-32 (186)
395 2yjt_D ATP-dependent RNA helic 67.1 1.5 5.2E-05 35.5 0.0 75 102-204 31-105 (170)
396 2oca_A DAR protein, ATP-depend 63.1 20 0.00068 34.7 8.1 78 103-207 349-426 (510)
397 1f2t_A RAD50 ABC-ATPase; DNA d 63.1 3.4 0.00012 32.6 2.1 15 71-85 25-39 (149)
398 1qf9_A UMP/CMP kinase, protein 63.0 3.7 0.00013 33.7 2.4 19 70-88 7-25 (194)
399 1htw_A HI0065; nucleotide-bind 62.8 4.8 0.00016 32.1 2.9 19 67-85 31-49 (158)
400 1ry6_A Internal kinesin; kines 62.7 3.4 0.00012 38.1 2.3 37 51-87 60-103 (360)
401 2bwj_A Adenylate kinase 5; pho 62.7 4.5 0.00015 33.4 2.9 20 69-88 12-31 (199)
402 2pez_A Bifunctional 3'-phospho 62.4 4.1 0.00014 33.1 2.6 19 69-87 5-23 (179)
403 3a4m_A L-seryl-tRNA(SEC) kinas 62.4 3.3 0.00011 36.3 2.1 19 70-88 5-23 (260)
404 2z0h_A DTMP kinase, thymidylat 62.4 3.4 0.00012 34.1 2.1 17 72-88 3-19 (197)
405 1z5z_A Helicase of the SNF2/RA 62.2 60 0.0021 28.3 10.3 61 77-144 92-152 (271)
406 2vhj_A Ntpase P4, P4; non- hyd 62.1 4.3 0.00015 36.7 2.7 23 69-91 123-145 (331)
407 3cmw_A Protein RECA, recombina 61.8 8 0.00027 43.4 5.3 42 66-111 31-72 (1706)
408 1ukz_A Uridylate kinase; trans 61.8 4.6 0.00016 33.6 2.8 16 71-86 17-32 (203)
409 1cke_A CK, MSSA, protein (cyti 61.7 4.5 0.00015 34.3 2.8 18 70-87 6-23 (227)
410 2og2_A Putative signal recogni 61.6 8.5 0.00029 35.5 4.7 36 69-108 157-192 (359)
411 2pt5_A Shikimate kinase, SK; a 61.6 4.7 0.00016 32.2 2.8 17 71-87 2-18 (168)
412 3e70_C DPA, signal recognition 61.6 6.4 0.00022 35.8 3.9 20 69-88 129-148 (328)
413 2wwf_A Thymidilate kinase, put 61.2 4.8 0.00016 33.7 2.8 20 69-88 10-29 (212)
414 1e4v_A Adenylate kinase; trans 61.0 5 0.00017 33.7 3.0 18 71-88 2-19 (214)
415 1sgw_A Putative ABC transporte 61.0 4.5 0.00016 34.2 2.6 31 195-225 149-179 (214)
416 3tqc_A Pantothenate kinase; bi 61.0 9.4 0.00032 34.6 4.8 15 72-86 95-109 (321)
417 3l0o_A Transcription terminati 61.0 14 0.00046 34.5 5.8 33 53-86 160-192 (427)
418 3asz_A Uridine kinase; cytidin 60.9 3.9 0.00013 34.3 2.2 18 69-86 6-23 (211)
419 2xb4_A Adenylate kinase; ATP-b 60.7 5.7 0.0002 33.7 3.3 18 71-88 2-19 (223)
420 2pbr_A DTMP kinase, thymidylat 60.5 4.9 0.00017 33.0 2.8 17 72-88 3-19 (195)
421 3lda_A DNA repair protein RAD5 60.4 7.1 0.00024 36.6 4.1 42 69-110 178-221 (400)
422 2bbw_A Adenylate kinase 4, AK4 60.4 5.3 0.00018 34.5 3.1 19 69-87 27-45 (246)
423 3m6a_A ATP-dependent protease 60.2 4.8 0.00016 39.7 3.0 20 68-87 107-126 (543)
424 1jjv_A Dephospho-COA kinase; P 60.2 5 0.00017 33.5 2.8 16 72-87 5-20 (206)
425 3be4_A Adenylate kinase; malar 60.2 5.2 0.00018 33.8 2.9 20 69-88 5-24 (217)
426 1m7g_A Adenylylsulfate kinase; 60.0 3.9 0.00013 34.4 2.1 20 69-88 25-44 (211)
427 2ghi_A Transport protein; mult 59.8 4 0.00014 35.8 2.1 19 67-85 44-62 (260)
428 3b6e_A Interferon-induced heli 59.7 5.9 0.0002 33.1 3.2 77 332-412 82-171 (216)
429 1tf7_A KAIC; homohexamer, hexa 59.6 8.4 0.00029 37.7 4.7 48 58-108 27-75 (525)
430 3tlx_A Adenylate kinase 2; str 59.4 6.2 0.00021 34.1 3.3 20 69-88 29-48 (243)
431 4e22_A Cytidylate kinase; P-lo 59.1 5.7 0.00019 34.6 3.0 19 69-87 27-45 (252)
432 1nn5_A Similar to deoxythymidy 59.1 5.5 0.00019 33.4 2.9 20 69-88 9-28 (215)
433 2f1r_A Molybdopterin-guanine d 58.9 3.7 0.00013 33.3 1.6 18 71-88 4-21 (171)
434 1b0u_A Histidine permease; ABC 58.8 4.2 0.00015 35.7 2.1 31 195-225 169-199 (262)
435 3pxi_A Negative regulator of g 58.5 6.7 0.00023 40.5 3.9 25 69-94 201-225 (758)
436 3kta_A Chromosome segregation 58.5 3.9 0.00013 33.3 1.7 15 71-85 28-42 (182)
437 3oaa_A ATP synthase subunit al 58.5 64 0.0022 31.0 10.2 64 56-124 150-215 (513)
438 1r6b_X CLPA protein; AAA+, N-t 58.4 1.7 5.9E-05 44.9 -0.6 17 71-87 490-506 (758)
439 3cmu_A Protein RECA, recombina 58.3 9.2 0.00031 43.7 5.0 47 60-110 1070-1118(2050)
440 3gfo_A Cobalt import ATP-bindi 58.1 4.7 0.00016 35.7 2.3 31 195-225 159-189 (275)
441 1vpl_A ABC transporter, ATP-bi 57.9 4.5 0.00015 35.3 2.1 31 195-225 162-192 (256)
442 2pze_A Cystic fibrosis transme 57.9 4.9 0.00017 34.4 2.3 18 68-85 33-50 (229)
443 2if2_A Dephospho-COA kinase; a 57.9 5.1 0.00017 33.3 2.4 16 71-86 3-18 (204)
444 3nh6_A ATP-binding cassette SU 57.9 4.6 0.00016 36.4 2.2 19 67-85 78-96 (306)
445 3aez_A Pantothenate kinase; tr 57.9 12 0.00041 33.7 5.0 19 68-86 89-107 (312)
446 2olj_A Amino acid ABC transpor 57.8 4.5 0.00015 35.5 2.1 19 67-85 48-66 (263)
447 2xxa_A Signal recognition part 57.8 9.8 0.00034 36.1 4.6 35 71-108 102-136 (433)
448 2ff7_A Alpha-hemolysin translo 57.6 5 0.00017 34.8 2.3 18 68-85 34-51 (247)
449 3tqf_A HPR(Ser) kinase; transf 57.6 5 0.00017 32.6 2.1 20 69-88 16-35 (181)
450 1mv5_A LMRA, multidrug resista 57.6 3.8 0.00013 35.5 1.6 18 68-85 27-44 (243)
451 2dhr_A FTSH; AAA+ protein, hex 57.5 4.2 0.00014 39.5 2.0 17 70-86 65-81 (499)
452 2ixe_A Antigen peptide transpo 57.3 4.7 0.00016 35.6 2.1 31 195-225 172-202 (271)
453 1ls1_A Signal recognition part 57.1 10 0.00035 33.8 4.4 36 69-108 98-133 (295)
454 2yz2_A Putative ABC transporte 57.1 4.7 0.00016 35.4 2.1 31 195-225 154-184 (266)
455 1g6h_A High-affinity branched- 56.6 5.3 0.00018 34.9 2.3 31 195-225 169-199 (257)
456 4g1u_C Hemin import ATP-bindin 56.5 5.2 0.00018 35.2 2.3 18 68-85 36-53 (266)
457 1ji0_A ABC transporter; ATP bi 56.5 5.3 0.00018 34.4 2.3 18 68-85 31-48 (240)
458 3qf7_A RAD50; ABC-ATPase, ATPa 56.4 4.7 0.00016 37.4 2.1 16 71-86 25-40 (365)
459 3eiq_A Eukaryotic initiation f 56.3 19 0.00066 33.5 6.5 75 101-204 280-355 (414)
460 2pcj_A ABC transporter, lipopr 56.2 4.7 0.00016 34.4 1.9 18 68-85 29-46 (224)
461 2zu0_C Probable ATP-dependent 56.2 6.3 0.00022 34.6 2.8 30 196-225 181-210 (267)
462 1pzn_A RAD51, DNA repair and r 56.1 7.8 0.00027 35.6 3.5 24 27-50 35-58 (349)
463 1fuu_A Yeast initiation factor 56.1 30 0.001 31.9 7.8 76 331-411 88-170 (394)
464 2qe7_A ATP synthase subunit al 55.7 13 0.00046 35.7 5.1 40 51-91 145-184 (502)
465 2yhs_A FTSY, cell division pro 55.6 12 0.00039 36.2 4.6 35 69-107 293-327 (503)
466 3tbk_A RIG-I helicase domain; 55.5 50 0.0017 32.0 9.6 103 80-203 370-476 (555)
467 1j8m_F SRP54, signal recogniti 55.2 11 0.00038 33.7 4.3 35 70-108 99-133 (297)
468 1vht_A Dephospho-COA kinase; s 55.2 5.2 0.00018 33.7 2.1 18 70-87 5-22 (218)
469 4gl2_A Interferon-induced heli 55.2 18 0.00061 36.8 6.4 79 101-203 400-488 (699)
470 1ypw_A Transitional endoplasmi 55.0 6.3 0.00022 41.0 3.0 21 67-87 236-256 (806)
471 2qi9_C Vitamin B12 import ATP- 54.9 5.9 0.0002 34.4 2.3 18 68-85 25-42 (249)
472 2ga8_A Hypothetical 39.9 kDa p 54.9 11 0.00036 34.7 4.1 17 71-87 26-42 (359)
473 3qks_A DNA double-strand break 54.8 9.3 0.00032 31.9 3.5 16 70-85 24-39 (203)
474 1uf9_A TT1252 protein; P-loop, 54.6 6.1 0.00021 32.7 2.4 17 71-87 10-26 (203)
475 1np6_A Molybdopterin-guanine d 54.2 13 0.00045 30.1 4.2 16 70-85 7-22 (174)
476 2obl_A ESCN; ATPase, hydrolase 54.0 12 0.00041 34.3 4.4 29 56-85 59-87 (347)
477 4a2p_A RIG-I, retinoic acid in 53.8 29 0.00098 33.9 7.5 77 332-412 55-139 (556)
478 2p6r_A Afuhel308 helicase; pro 53.8 16 0.00055 37.3 5.8 75 331-412 67-147 (702)
479 2nq2_C Hypothetical ABC transp 53.8 6.1 0.00021 34.4 2.3 18 68-85 30-47 (253)
480 2jeo_A Uridine-cytidine kinase 53.8 7 0.00024 33.7 2.7 19 69-87 25-43 (245)
481 4eaq_A DTMP kinase, thymidylat 53.7 9.6 0.00033 32.5 3.5 21 68-88 25-45 (229)
482 2grj_A Dephospho-COA kinase; T 53.7 7.8 0.00027 32.1 2.8 18 71-88 14-31 (192)
483 1r6b_X CLPA protein; AAA+, N-t 53.2 11 0.00039 38.7 4.6 26 68-94 206-231 (758)
484 2ihy_A ABC transporter, ATP-bi 53.2 6.4 0.00022 34.9 2.3 31 195-225 177-207 (279)
485 2d2e_A SUFC protein; ABC-ATPas 53.0 8.4 0.00029 33.4 3.0 31 195-225 159-189 (250)
486 1ltq_A Polynucleotide kinase; 52.7 6 0.0002 35.4 2.1 17 71-87 4-20 (301)
487 1rz3_A Hypothetical protein rb 52.5 7.1 0.00024 32.5 2.4 19 69-87 22-40 (201)
488 1odf_A YGR205W, hypothetical 3 52.3 7.9 0.00027 34.5 2.8 17 71-87 33-49 (290)
489 2dpy_A FLII, flagellum-specifi 52.1 16 0.00056 34.6 5.1 29 56-85 145-173 (438)
490 2ffh_A Protein (FFH); SRP54, s 52.1 12 0.00041 35.4 4.1 36 69-108 98-133 (425)
491 2vp4_A Deoxynucleoside kinase; 51.8 6.8 0.00023 33.4 2.3 17 69-85 20-36 (230)
492 2r9v_A ATP synthase subunit al 51.8 13 0.00044 35.9 4.2 35 56-91 163-197 (515)
493 3dkp_A Probable ATP-dependent 51.6 13 0.00045 31.8 4.1 78 332-412 98-184 (245)
494 3hjn_A DTMP kinase, thymidylat 51.6 18 0.00062 29.9 4.8 38 72-113 3-41 (197)
495 1vt4_I APAF-1 related killer D 51.5 31 0.0011 36.9 7.3 40 50-89 131-170 (1221)
496 3v9p_A DTMP kinase, thymidylat 51.4 18 0.00063 30.7 4.9 27 68-95 24-50 (227)
497 2bbs_A Cystic fibrosis transme 51.0 5.9 0.0002 35.3 1.8 19 67-85 62-80 (290)
498 3p32_A Probable GTPase RV1496/ 51.0 18 0.00062 33.2 5.2 19 70-88 80-98 (355)
499 1gtv_A TMK, thymidylate kinase 50.9 5.2 0.00018 33.5 1.3 16 72-87 3-18 (214)
500 3bs4_A Uncharacterized protein 50.8 17 0.00059 31.7 4.6 60 60-124 11-71 (260)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.4e-55 Score=426.48 Aligned_cols=372 Identities=25% Similarity=0.410 Sum_probs=313.8
Q ss_pred CCCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHH
Q 011620 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 16 ~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~ 95 (481)
..|....+|+++. +++.+++.++++||..|+|+|.++++.+++ ++++++++|||||||++|++|++..+.
T Consensus 50 ~~p~~~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~ 119 (434)
T 2db3_A 50 DVPQPIQHFTSAD------LRDIIIDNVNKSGYKIPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLL 119 (434)
T ss_dssp SCCCCCCCGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCcCChhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHH
Confidence 3444556666664 999999999999999999999999999887 899999999999999999999999887
Q ss_pred hhc----cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhcc
Q 011620 96 NRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (481)
Q Consensus 96 ~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (481)
... ..++++||++||++|+.|+++.+.+++...++++..++|+.....+... +..
T Consensus 120 ~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---------------------l~~ 178 (434)
T 2db3_A 120 EDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNEC---------------------ITR 178 (434)
T ss_dssp HSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHH---------------------HTT
T ss_pred hcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHH---------------------hhc
Confidence 643 2367899999999999999999999998888999999998876654332 345
Q ss_pred CCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhh
Q 011620 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (481)
Q Consensus 172 ~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
+++|+|+||++|.+++.+ ..+.+.++++||+||||++.+.++...+..++......
T Consensus 179 ~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~----------------------- 234 (434)
T 2db3_A 179 GCHVVIATPGRLLDFVDR-TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR----------------------- 234 (434)
T ss_dssp CCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC-----------------------
T ss_pred CCCEEEEChHHHHHHHHh-CCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC-----------------------
Confidence 679999999999999887 34668899999999999999998888888887754311
Q ss_pred hccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcC
Q 011620 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331 (481)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 331 (481)
+..+++++|||++.....+...++.++..+....... ....+.+.........+...+..++....
T Consensus 235 -------------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~~l~~~~ 300 (434)
T 2db3_A 235 -------------PEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGG-ACSDVKQTIYEVNKYAKRSKLIEILSEQA 300 (434)
T ss_dssp -------------SSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTC-CCTTEEEEEEECCGGGHHHHHHHHHHHCC
T ss_pred -------------CCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccc-cccccceEEEEeCcHHHHHHHHHHHHhCC
Confidence 2348999999998888878877787777665554332 23344455556666778888888887765
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEec
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~ 411 (481)
. ++||||+++..++.+++.|.+.+ +.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 301 ~-~~lVF~~t~~~a~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d 376 (434)
T 2db3_A 301 D-GTIVFVETKRGADFLASFLSEKE---FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYD 376 (434)
T ss_dssp T-TEEEECSSHHHHHHHHHHHHHTT---CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESS
T ss_pred C-CEEEEEeCcHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEEC
Confidence 4 49999999999999999999876 8899999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHhhhhcCCCCCcEEEEEeC-Ccchhhhhhcccccchhhh
Q 011620 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHK-DEVCLVGCLTPLLLCTSDI 460 (481)
Q Consensus 412 ~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~-~~~~~~~~i~~~~~~~~~~ 460 (481)
.|.+..+|+||+||+||.|+.|.+++|+++ .+......+.+.+....+.
T Consensus 377 ~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~ 426 (434)
T 2db3_A 377 MPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQT 426 (434)
T ss_dssp CCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999995 5667777887777655543
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-52 Score=411.71 Aligned_cols=375 Identities=27% Similarity=0.422 Sum_probs=310.3
Q ss_pred CCCCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 15 ~~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
...|.+..+|+++. +++.+.+++..+||..|+|+|.++++.+.+ ++++++.+|||+|||++|++|++..+
T Consensus 8 ~~~p~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~ 77 (417)
T 2i4i_A 8 NNCPPHIESFSDVE------MGEIIMGNIELTRYTRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQI 77 (417)
T ss_dssp TTCCCCCSSGGGSC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcCCcccCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 34567777888885 999999999999999999999999999887 89999999999999999999999887
Q ss_pred Hhhcc-----------------CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccC
Q 011620 95 SNRAV-----------------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAG 157 (481)
Q Consensus 95 ~~~~~-----------------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (481)
..... .+++++|++|+++|+.|+++.+.++....++++..++|+.........
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------- 147 (417)
T 2i4i_A 78 YSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD---------- 147 (417)
T ss_dssp HHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH----------
T ss_pred HhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH----------
Confidence 65421 236799999999999999999999988888999999998876655432
Q ss_pred ccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccc
Q 011620 158 ICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS 237 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 237 (481)
+..+++|+|+||++|...+.. ..+.+.++++||+||||.+.+.++...+..++.......
T Consensus 148 -----------~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~-------- 207 (417)
T 2i4i_A 148 -----------LERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP-------- 207 (417)
T ss_dssp -----------HTTCCSEEEECHHHHHHHHHT-TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCC--------
T ss_pred -----------hhCCCCEEEEChHHHHHHHHc-CCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCC--------
Confidence 335679999999999998887 346688899999999999988887777777765432111
Q ss_pred cccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCC
Q 011620 238 TFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK 317 (481)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (481)
....+++++|||++..........+..+..+...... .....+.+........
T Consensus 208 --------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 260 (417)
T 2i4i_A 208 --------------------------KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEES 260 (417)
T ss_dssp --------------------------BTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----CCSSEEEEEEECCGG
T ss_pred --------------------------cCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CCccCceEEEEEeccH
Confidence 0234899999999877666666666666655443332 2233344445556666
Q ss_pred CcHHHHHHHHHhc-CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEeccccc
Q 011620 318 LKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (481)
Q Consensus 318 ~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~ 396 (481)
.+...+..++... .++++||||+++..++.+++.|.+.+ +.+..+||+++..+|.++++.|++|+.+|||||++++
T Consensus 261 ~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 337 (417)
T 2i4i_A 261 DKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAA 337 (417)
T ss_dssp GHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHH
T ss_pred hHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC---CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhh
Confidence 7778888888876 46789999999999999999998876 8899999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhh
Q 011620 397 RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSD 459 (481)
Q Consensus 397 ~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~ 459 (481)
+|+|+|++++||+++.|.+...|+||+||+||.|+.|.+++|+++.+...+..+.+.+....+
T Consensus 338 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 338 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp TTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred cCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999888876544
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.6e-52 Score=407.73 Aligned_cols=356 Identities=24% Similarity=0.425 Sum_probs=302.0
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
+++.+.+.++++||..|+|+|.++++.+++ ++++++.+|||+|||++|+++++..+... ..+.++||++|+++|+
T Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~Pt~~L~ 118 (410)
T 2j0s_A 44 LREDLLRGIYAYGFEKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQ-VRETQALILAPTRELA 118 (410)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTT-SCSCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhc-cCCceEEEEcCcHHHH
Confidence 999999999999999999999999999887 89999999999999999999999876533 3456899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcc
Q 011620 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~ 194 (481)
.|+++.+..+....++.+....|+......... +..+++|+|+||+++...+.. ..+.
T Consensus 119 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~ivv~Tp~~l~~~l~~-~~~~ 176 (410)
T 2j0s_A 119 VQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---------------------LDYGQHVVAGTPGRVFDMIRR-RSLR 176 (410)
T ss_dssp HHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---------------------HHHCCSEEEECHHHHHHHHHT-TSSC
T ss_pred HHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---------------------hhcCCCEEEcCHHHHHHHHHh-CCcc
Confidence 999999999998888999999998876665433 234569999999999998887 3466
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeE
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (481)
+.++++||+||||.+.+.++...+..++.... +..+++++||
T Consensus 177 ~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~~SA 218 (410)
T 2j0s_A 177 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP--------------------------------------PATQVVLISA 218 (410)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHTTSC--------------------------------------TTCEEEEEES
T ss_pred HhheeEEEEccHHHHHhhhhHHHHHHHHHhCc--------------------------------------cCceEEEEEc
Confidence 78899999999999988887777766665443 2238999999
Q ss_pred EEecCcccccccccCCceeeecCCccccCCcccccceecccC-CCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHh
Q 011620 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~ 353 (481)
|++..........+..+..+........ ...+.+....... ..+...+..++.....+++||||+++..++.+++.|.
T Consensus 219 T~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~ 297 (410)
T 2j0s_A 219 TLPHEILEMTNKFMTDPIRILVKRDELT-LEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR 297 (410)
T ss_dssp CCCHHHHTTGGGTCSSCEEECCCGGGCS-CTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCcccc-CCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHH
Confidence 9987777777777777766554433322 2233344444433 3377788888888788899999999999999999999
Q ss_pred hcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCC
Q 011620 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g 433 (481)
+.+ +.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|++...|+||+||+||.|+.|
T Consensus 298 ~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g 374 (410)
T 2j0s_A 298 EAN---FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG 374 (410)
T ss_dssp HTT---CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE
T ss_pred hCC---CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce
Confidence 876 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCCcchhhhhhcccccchhh
Q 011620 434 RCFTLLHKDEVCLVGCLTPLLLCTSD 459 (481)
Q Consensus 434 ~~i~~~~~~~~~~~~~i~~~~~~~~~ 459 (481)
.+++|+++.+...+..+.+++...-+
T Consensus 375 ~~~~~~~~~~~~~~~~i~~~~~~~~~ 400 (410)
T 2j0s_A 375 VAINFVKNDDIRILRDIEQYYSTQID 400 (410)
T ss_dssp EEEEEEEGGGHHHHHHHHHHTTCCCE
T ss_pred EEEEEecHHHHHHHHHHHHHhCCCce
Confidence 99999999999999999888876544
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=7.3e-51 Score=395.21 Aligned_cols=361 Identities=24% Similarity=0.350 Sum_probs=298.3
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCC
Q 011620 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (481)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~ 101 (481)
++|+++. +++.+.++|.++||..|+|+|.++++.++. ++++++.+|||+|||++++++++..+... ..+
T Consensus 8 ~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~ 76 (391)
T 1xti_A 8 SGFRDFL------LKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV-TGQ 76 (391)
T ss_dssp -CGGGGC------CCHHHHHHHHHHSCCSCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCC-TTC
T ss_pred CChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhccc-CCC
Confidence 4566664 999999999999999999999999999887 89999999999999999999998876543 335
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCC
Q 011620 102 LRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 102 ~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~ 180 (481)
.+++|++|+++|+.|+.+.+.++.... ++++..+.|+.........+. ...++|+|+||
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------------~~~~~iiv~T~ 136 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK--------------------KNCPHIVVGTP 136 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH--------------------HSCCSEEEECH
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh--------------------cCCCCEEEECH
Confidence 589999999999999999999998765 789999999877655433221 13469999999
Q ss_pred hhHHHhhhcCCCcccCCccEEEEecchhhhh-HhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccC
Q 011620 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
+++...+.. ..+.+.++++||+||||.+.+ ..+...+..++....
T Consensus 137 ~~l~~~~~~-~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~--------------------------------- 182 (391)
T 1xti_A 137 GRILALARN-KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP--------------------------------- 182 (391)
T ss_dssp HHHHHHHHT-TSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC---------------------------------
T ss_pred HHHHHHHHc-CCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCC---------------------------------
Confidence 999998876 345678899999999999876 456555665555432
Q ss_pred CCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEc
Q 011620 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFT 339 (481)
Q Consensus 260 ~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~ 339 (481)
...+++++|||++..........+..+..+........................+...+..++....++++||||
T Consensus 183 -----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~ 257 (391)
T 1xti_A 183 -----HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFV 257 (391)
T ss_dssp -----SSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEEC
T ss_pred -----CCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEe
Confidence 123899999999888777777777777665544433333344555566666777888888888888889999999
Q ss_pred CCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhH
Q 011620 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (481)
Q Consensus 340 ~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~ 419 (481)
+++..++.+++.|.+.+ ..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|++...|
T Consensus 258 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~ 334 (391)
T 1xti_A 258 KSVQRCIALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 334 (391)
T ss_dssp SCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHH
T ss_pred CcHHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 99999999999999876 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCcEEEEEeCCc-chhhhhhccccc
Q 011620 420 IHRAGRTARAGQLGRCFTLLHKDE-VCLVGCLTPLLL 455 (481)
Q Consensus 420 ~Q~~GR~~R~~~~g~~i~~~~~~~-~~~~~~i~~~~~ 455 (481)
.||+||+||.|+.|.+++++++.+ ...+..+.+.+.
T Consensus 335 ~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 371 (391)
T 1xti_A 335 LHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 371 (391)
T ss_dssp HHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTT
T ss_pred HHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhc
Confidence 999999999999999999998764 355566655543
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.3e-51 Score=397.27 Aligned_cols=353 Identities=27% Similarity=0.464 Sum_probs=298.7
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
+++.+.+.+.++||..|+|+|.++++.+++ ++++++.+|||+|||++++++++..+... ..+.+++|++|+++|+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~ 102 (400)
T 1s2m_A 28 LKRELLMGIFEAGFEKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPK-LNKIQALIMVPTRELA 102 (400)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhc-cCCccEEEEcCCHHHH
Confidence 999999999999999999999999999886 78999999999999999999998877543 2455799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcc
Q 011620 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~ 194 (481)
.|+++.+..+....++.+....|+......... +..+++|+|+||+++...+.. ....
T Consensus 103 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~Ivv~T~~~l~~~~~~-~~~~ 160 (400)
T 1s2m_A 103 LQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR---------------------LNETVHILVGTPGRVLDLASR-KVAD 160 (400)
T ss_dssp HHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH---------------------TTSCCSEEEECHHHHHHHHHT-TCSC
T ss_pred HHHHHHHHHHhcccCceEEEEeCCcchHHHHHH---------------------hcCCCCEEEEchHHHHHHHHh-CCcc
Confidence 999999999998888999999988776554322 335679999999999988876 3356
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeE
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (481)
+.++++||+||||.+.+..+...+..++.... +..+++++||
T Consensus 161 ~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~lSA 202 (400)
T 1s2m_A 161 LSDCSLFIMDEADKMLSRDFKTIIEQILSFLP--------------------------------------PTHQSLLFSA 202 (400)
T ss_dssp CTTCCEEEEESHHHHSSHHHHHHHHHHHTTSC--------------------------------------SSCEEEEEES
T ss_pred cccCCEEEEeCchHhhhhchHHHHHHHHHhCC--------------------------------------cCceEEEEEe
Confidence 78899999999999988888877777765543 2237899999
Q ss_pred EEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhh
Q 011620 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~ 354 (481)
|++..........+..+..+..... .....+..+........+...+..++.....+++||||++++.++.+++.|.+
T Consensus 203 T~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~ 280 (400)
T 1s2m_A 203 TFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITD 280 (400)
T ss_dssp CCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHh
Confidence 9987766666666666654433322 12233444555555667777888888888888999999999999999999998
Q ss_pred cCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCc
Q 011620 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~ 434 (481)
.+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|++...|+||+||+||.|+.|.
T Consensus 281 ~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~ 357 (400)
T 1s2m_A 281 LG---YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL 357 (400)
T ss_dssp HT---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEE
T ss_pred cC---CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCce
Confidence 76 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCcchhhhhhcccccch
Q 011620 435 CFTLLHKDEVCLVGCLTPLLLCT 457 (481)
Q Consensus 435 ~i~~~~~~~~~~~~~i~~~~~~~ 457 (481)
|++|+++.+...+..+.+.+...
T Consensus 358 ~~~l~~~~~~~~~~~i~~~~~~~ 380 (400)
T 1s2m_A 358 AINLINWNDRFNLYKIEQELGTE 380 (400)
T ss_dssp EEEEECGGGHHHHHHHHHHHTCC
T ss_pred EEEEeccchHHHHHHHHHHhCCC
Confidence 99999999999988888776544
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.4e-51 Score=401.72 Aligned_cols=358 Identities=24% Similarity=0.401 Sum_probs=289.1
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
++++.+.+.+.++||..|+++|.++++.+++ ++++++.+|||+|||++|+++++..+... ..+.+++|++|+++|
T Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L 120 (414)
T 3eiq_A 46 NLSESLLRGIYAYGFEKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELD-LKATQALVLAPTREL 120 (414)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTT-SCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhc-CCceeEEEEeChHHH
Confidence 3999999999999999999999999999987 88999999999999999999999887653 245589999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc
Q 011620 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
+.|+.+.+..+....+..+....|+........... ..+++|+|+||+++...+.. ..+
T Consensus 121 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~iiv~T~~~l~~~l~~-~~~ 179 (414)
T 3eiq_A 121 AQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQ--------------------MEAPHIIVGTPGRVFDMLNR-RYL 179 (414)
T ss_dssp HHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHT--------------------TTCCSEEEECHHHHHHHHHH-TSS
T ss_pred HHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHh--------------------cCCCCEEEECHHHHHHHHHc-CCc
Confidence 999999999998888899999998887666543322 24579999999999998877 446
Q ss_pred ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEe
Q 011620 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (481)
.+..+++||+||||.+.+.++...+..++.... +..+++++|
T Consensus 180 ~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~i~~S 221 (414)
T 3eiq_A 180 SPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN--------------------------------------SNTQVVLLS 221 (414)
T ss_dssp CSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSC--------------------------------------TTCEEEEEC
T ss_pred ccccCcEEEEECHHHhhccCcHHHHHHHHHhCC--------------------------------------CCCeEEEEE
Confidence 677899999999999988877777776665543 233899999
Q ss_pred EEEecCcccccccccCCceeeecCCccccCCcccccceec-ccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHH
Q 011620 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l 352 (481)
||++..........+.++..+........... +...... .....+...+..++.....+++||||++++.++.+++.|
T Consensus 222 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l 300 (414)
T 3eiq_A 222 ATMPSDVLEVTKKFMRDPIRILVKKEELTLEG-IRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM 300 (414)
T ss_dssp SCCCHHHHHHHTTTCSSCEEECCCCCCCCTTS-CCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHcCCCEEEEecCCccCCCC-ceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHH
Confidence 99987777777777777766655444333322 3333333 334457888888888888889999999999999999999
Q ss_pred hhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCC
Q 011620 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~ 432 (481)
.+.+ +.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|.||+||+||.|+.
T Consensus 301 ~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 377 (414)
T 3eiq_A 301 HARD---FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRK 377 (414)
T ss_dssp HTTT---CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC------
T ss_pred HhcC---CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCC
Confidence 8876 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCcchhhhhhcccccchhh
Q 011620 433 GRCFTLLHKDEVCLVGCLTPLLLCTSD 459 (481)
Q Consensus 433 g~~i~~~~~~~~~~~~~i~~~~~~~~~ 459 (481)
|.|++|+++.+...+..+.+++...-.
T Consensus 378 g~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (414)
T 3eiq_A 378 GVAINMVTEEDKRTLRDIETFYNTSIE 404 (414)
T ss_dssp -CEEEEECSTHHHHHHHHHHHTTCCCE
T ss_pred ceEEEEEcHHHHHHHHHHHHHHcCCcc
Confidence 999999999999999998888766544
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.2e-50 Score=393.49 Aligned_cols=362 Identities=23% Similarity=0.352 Sum_probs=291.4
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc
Q 011620 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~ 99 (481)
+..+|+++. +++.+.+.+.++||..|+|+|.++++.++.. .++++++.+|||+|||++|+++++..+... .
T Consensus 23 ~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~ 93 (412)
T 3fht_A 23 SVKSFEELR------LKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-N 93 (412)
T ss_dssp CSSCTGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTT-S
T ss_pred ccCCHhhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhc-C
Confidence 345566664 9999999999999999999999999999872 238999999999999999999999887654 3
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEe
Q 011620 100 RCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (481)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~ 178 (481)
.+++++|++|+++|+.|+++.+..+.... ++.+....++...... ....++|+|+
T Consensus 94 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~ivv~ 149 (412)
T 3fht_A 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIG 149 (412)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT------------------------CCCCCSEEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh------------------------hcCCCCEEEE
Confidence 45589999999999999999999987654 5777777766543221 1235699999
Q ss_pred CChhHHHhhhcCCCcccCCccEEEEecchhhhh-HhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccc
Q 011620 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (481)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (481)
||+++...+.....+.+.++++||+||||.+.+ ..+......+.....
T Consensus 150 T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~------------------------------- 198 (412)
T 3fht_A 150 TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------------- 198 (412)
T ss_dssp CHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC-------------------------------
T ss_pred CchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC-------------------------------
Confidence 999999998776667788999999999999876 455555555554432
Q ss_pred cCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceec-ccCCCcHHHHHHHHHhcCCCcEE
Q 011620 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI-CESKLKPLYLVALLQSLGEEKCI 336 (481)
Q Consensus 258 ~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~l~~~l~~~~~~~~l 336 (481)
...+++++|||++..........+..+..+.......... .+...... .....+...+..++.....+++|
T Consensus 199 -------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 270 (412)
T 3fht_A 199 -------RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD-TIKQYYVLCSSRDEKFQALCNLYGAITIAQAM 270 (412)
T ss_dssp -------TTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCT-TEEEEEEECSSHHHHHHHHHHHHHHHSSSEEE
T ss_pred -------CCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccccccc-CceEEEEEcCChHHHHHHHHHHHhhcCCCCEE
Confidence 2238999999998877777777777776665544433322 23333333 33345677777888887889999
Q ss_pred EEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCC---
Q 011620 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--- 413 (481)
Q Consensus 337 Vf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p--- 413 (481)
|||+++..++.+++.|.+.+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 271 vf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~ 347 (412)
T 3fht_A 271 IFCHTRKTASWLAAELSKEG---HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK 347 (412)
T ss_dssp EECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCS
T ss_pred EEeCCHHHHHHHHHHHHhCC---CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCC
Confidence 99999999999999999876 789999999999999999999999999999999999999999999999999999
Q ss_pred ---CChhhHHHHHhhhhcCCCCCcEEEEEeCCc-chhhhhhcccccc
Q 011620 414 ---AYIKTYIHRAGRTARAGQLGRCFTLLHKDE-VCLVGCLTPLLLC 456 (481)
Q Consensus 414 ---~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~-~~~~~~i~~~~~~ 456 (481)
.+...|+||+||+||.|+.|.+++++++.+ ...+..+.+.+..
T Consensus 348 ~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~ 394 (412)
T 3fht_A 348 DGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 394 (412)
T ss_dssp SSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTC
T ss_pred CCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCC
Confidence 467899999999999999999999998765 5666666665543
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=5.3e-50 Score=389.78 Aligned_cols=358 Identities=22% Similarity=0.346 Sum_probs=286.6
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccC
Q 011620 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~ 100 (481)
..+|+++. +++.+.+.+.++||..|+|+|.++++.++.. .++++++.+|||+|||++++++++..+... ..
T Consensus 4 ~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-~~ 74 (395)
T 3pey_A 4 AKSFDELG------LAPELLKGIYAMKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-DA 74 (395)
T ss_dssp CCSSTTSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTT-CC
T ss_pred ccCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccC-CC
Confidence 45666664 9999999999999999999999999999872 228999999999999999999999877543 34
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~ 180 (481)
+.+++|++|+++|+.|+++.+..+....++.+....++..... ...+++|+|+||
T Consensus 75 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~iiv~T~ 129 (395)
T 3pey_A 75 SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN-------------------------KQINAQVIVGTP 129 (395)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT-------------------------SCBCCSEEEECH
T ss_pred CccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh-------------------------ccCCCCEEEEcH
Confidence 5689999999999999999999998877888887777643221 123579999999
Q ss_pred hhHHHhhhcCCCcccCCccEEEEecchhhhh-HhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccC
Q 011620 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
+++...+.. ....+.++++||+||||.+.+ ..+...+..+....+
T Consensus 130 ~~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~--------------------------------- 175 (395)
T 3pey_A 130 GTVLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP--------------------------------- 175 (395)
T ss_dssp HHHHHHHHT-TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSC---------------------------------
T ss_pred HHHHHHHHc-CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCC---------------------------------
Confidence 999998876 446688899999999999876 455555555554442
Q ss_pred CCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecc-cCCCcHHHHHHHHHhcCCCcEEEE
Q 011620 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIVF 338 (481)
Q Consensus 260 ~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~lVf 338 (481)
...+++++|||+++.........+..+..+.......... ......... ....+...+..++.....+++|||
T Consensus 176 -----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf 249 (395)
T 3pey_A 176 -----KDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVD-AIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIF 249 (395)
T ss_dssp -----TTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCT-TEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEE
T ss_pred -----CCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccc-cccEEEEEcCchHHHHHHHHHHHHhccCCCEEEE
Confidence 2238999999998776766666666665554443332222 222333322 334566667777777778899999
Q ss_pred cCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCC----
Q 011620 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA---- 414 (481)
Q Consensus 339 ~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~---- 414 (481)
|+++..++.+++.|++.+ ..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|+
T Consensus 250 ~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~ 326 (395)
T 3pey_A 250 VATKKTANVLYGKLKSEG---HEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANG 326 (395)
T ss_dssp CSCHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTS
T ss_pred eCCHHHHHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcC
Confidence 999999999999999876 7899999999999999999999999999999999999999999999999999998
Q ss_pred --ChhhHHHHHhhhhcCCCCCcEEEEEeCCc-chhhhhhccccc
Q 011620 415 --YIKTYIHRAGRTARAGQLGRCFTLLHKDE-VCLVGCLTPLLL 455 (481)
Q Consensus 415 --s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~-~~~~~~i~~~~~ 455 (481)
+...|+||+||+||.|+.|.+++++.+.+ ...+..+.+.+.
T Consensus 327 ~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 327 QADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp SBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999999999999998754 444555554443
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.1e-49 Score=381.66 Aligned_cols=346 Identities=27% Similarity=0.463 Sum_probs=288.1
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCC-CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~-~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
+++.+.+.++++||..|+|+|.++++.+++ + +++++.+|||+|||++++.+++..+... .+.+++|++|+++|
T Consensus 13 l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~--~~~~~lil~P~~~L 86 (367)
T 1hv8_A 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLN----DEYNIVAQARTGSGKTASFAIPLIELVNEN--NGIEAIILTPTREL 86 (367)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHH----TCSEEEEECCSSSSHHHHHHHHHHHHSCSS--SSCCEEEECSCHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHHHhccc--CCCcEEEEcCCHHH
Confidence 999999999999999999999999999886 5 6899999999999999999988776543 45589999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc
Q 011620 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
+.|+++.+..+....++.+....|+.......... .+++|+|+||+++...+.. ..+
T Consensus 87 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------------~~~~iiv~T~~~l~~~~~~-~~~ 143 (367)
T 1hv8_A 87 AIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL----------------------KNANIVVGTPGRILDHINR-GTL 143 (367)
T ss_dssp HHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH----------------------HTCSEEEECHHHHHHHHHT-TCS
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc----------------------CCCCEEEecHHHHHHHHHc-CCc
Confidence 99999999999887788899999887765543221 2469999999999998876 345
Q ss_pred ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEe
Q 011620 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (481)
.+.++++||+||||.+.+.++...+..++.... ...+++++|
T Consensus 144 ~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~i~~S 185 (367)
T 1hv8_A 144 NLKNVKYFILDEADEMLNMGFIKDVEKILNACN--------------------------------------KDKRILLFS 185 (367)
T ss_dssp CTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC--------------------------------------SSCEEEEEC
T ss_pred ccccCCEEEEeCchHhhhhchHHHHHHHHHhCC--------------------------------------CCceEEEEe
Confidence 678899999999999988777666666665442 223789999
Q ss_pred EEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHh
Q 011620 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~ 353 (481)
||++..........+..+........ ..+...........+...+...+. ..+.++||||+++..++.+++.|.
T Consensus 186 AT~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~ 259 (367)
T 1hv8_A 186 ATMPREILNLAKKYMGDYSFIKAKIN-----ANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLR 259 (367)
T ss_dssp SSCCHHHHHHHHHHCCSEEEEECCSS-----SSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHH
T ss_pred eccCHHHHHHHHHHcCCCeEEEecCC-----CCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHH
Confidence 99987665555555554444332221 233344445555667777777666 456789999999999999999999
Q ss_pred hcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCC
Q 011620 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g 433 (481)
+.+ ..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|+|...|.||+||++|.|+.|
T Consensus 260 ~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g 336 (367)
T 1hv8_A 260 DIG---FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKG 336 (367)
T ss_dssp HTT---CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCC
T ss_pred hcC---CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCcc
Confidence 876 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCCcchhhhhhcccccc
Q 011620 434 RCFTLLHKDEVCLVGCLTPLLLC 456 (481)
Q Consensus 434 ~~i~~~~~~~~~~~~~i~~~~~~ 456 (481)
.+++++++.+...+..+.+.+..
T Consensus 337 ~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 337 KAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp EEEEEECTTSHHHHHHHHHHHTC
T ss_pred EEEEEEcHHHHHHHHHHHHHhCC
Confidence 99999999999999888776654
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4.5e-51 Score=397.16 Aligned_cols=363 Identities=26% Similarity=0.438 Sum_probs=166.8
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccC
Q 011620 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~ 100 (481)
..+|++++ +++.+.+.+.++||.+|+|+|.++++.+++ ++++++.+|||+|||++|+++++..+... ..
T Consensus 20 ~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-~~ 88 (394)
T 1fuu_A 20 VYKFDDME------LDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTS-VK 88 (394)
T ss_dssp CCSSGGGC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTT-CC
T ss_pred cCChhhcC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhcc-CC
Confidence 34466664 999999999999999999999999999887 88999999999999999999999877553 34
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~ 180 (481)
+++++|++|+++|+.|+++.+.++....++.+..+.|+.......... .+++|+|+||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------------~~~~i~v~T~ 146 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL----------------------RDAQIVVGTP 146 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHH----------------------HHCSEEEECH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhc----------------------CCCCEEEECH
Confidence 568999999999999999999999888889999999987765543221 2358999999
Q ss_pred hhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCC
Q 011620 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (481)
+++...+.. ..+.+.++++||+||||.+.+.++...+..++.....
T Consensus 147 ~~l~~~~~~-~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~--------------------------------- 192 (394)
T 1fuu_A 147 GRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP--------------------------------- 192 (394)
T ss_dssp HHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT---------------------------------
T ss_pred HHHHHHHHh-CCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCC---------------------------------
Confidence 999998876 3456788999999999999888777777777665532
Q ss_pred CCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccC-CCcHHHHHHHHHhcCCCcEEEEc
Q 011620 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVALLQSLGEEKCIVFT 339 (481)
Q Consensus 261 ~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lVf~ 339 (481)
..+++++|||++..........+..+..+......... ..+......... ..+...+..++.....+++||||
T Consensus 193 -----~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~ 266 (394)
T 1fuu_A 193 -----TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTL-EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFC 266 (394)
T ss_dssp -----TCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------------------------
T ss_pred -----CceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccC-CCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEE
Confidence 23799999999876666666666666655443332221 222222222222 23556666667666778999999
Q ss_pred CCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhH
Q 011620 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (481)
Q Consensus 340 ~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~ 419 (481)
++++.++.+++.|.+.+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|
T Consensus 267 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~ 343 (394)
T 1fuu_A 267 NTRRKVEELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENY 343 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHcC---CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 99999999999998765 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhh
Q 011620 420 IHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSD 459 (481)
Q Consensus 420 ~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~ 459 (481)
.||+||+||.|+.|.+++|+++.+...+..+.+.+...-.
T Consensus 344 ~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (394)
T 1fuu_A 344 IHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 383 (394)
T ss_dssp ----------------------------------------
T ss_pred HHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCccc
Confidence 9999999999999999999999999999998887766544
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.4e-49 Score=400.01 Aligned_cols=367 Identities=28% Similarity=0.410 Sum_probs=288.0
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc---cCCccEEEEcccH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTR 111 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~~~lil~P~~ 111 (481)
|++++++++.++||..|+|+|.++++.++.. .++++++.+|||+|||++|++|++..+.... ..++++||++|++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 105 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchH
Confidence 8999999999999999999999999998831 2789999999999999999999999887653 2346899999999
Q ss_pred HHHHHHHHHHHHhccc----cCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhh
Q 011620 112 DLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (481)
Q Consensus 112 ~L~~q~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l 187 (481)
+|+.|+++.+..+... ....+....|+.........+. ..+++|+|+||++|..++
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~--------------------~~~~~IlV~Tp~~l~~~l 165 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN--------------------KLRPNIVIATPGRLIDVL 165 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHH--------------------HHCCSEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHh--------------------cCCCCEEEECHHHHHHHH
Confidence 9999999999987532 2466778888877665544322 245799999999999988
Q ss_pred hcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcce
Q 011620 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (481)
Q Consensus 188 ~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (481)
.......+..+++||+||||++.+.++...+..++..+....... ....
T Consensus 166 ~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~-------------------------------~~~~ 214 (579)
T 3sqw_A 166 EKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS-------------------------------ADNI 214 (579)
T ss_dssp HHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSC-------------------------------TTCC
T ss_pred HhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhccc-------------------------------ccCc
Confidence 764334577899999999999999888888888877664322100 1234
Q ss_pred eeEEEeEEEecCcccccccccCCceeeecCC---ccccCCcccccceecccCC-CcH----HHHHHHHHh-cCCCcEEEE
Q 011620 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGE---TRYKLPERLESYKLICESK-LKP----LYLVALLQS-LGEEKCIVF 338 (481)
Q Consensus 268 ~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~k~----~~l~~~l~~-~~~~~~lVf 338 (481)
+++++|||+++.........+..+..+.... ........+.......... .+. ..+...+.. ..+.++|||
T Consensus 215 ~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF 294 (579)
T 3sqw_A 215 KTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIF 294 (579)
T ss_dssp EEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 8999999998877777777776654443221 1111222222222222221 111 122222332 456799999
Q ss_pred cCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhh
Q 011620 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (481)
Q Consensus 339 ~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~ 418 (481)
|+++..++.+++.|.+....+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...
T Consensus 295 ~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~ 374 (579)
T 3sqw_A 295 APTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELAN 374 (579)
T ss_dssp CSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTH
T ss_pred CCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHH
Confidence 99999999999999876333488999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccc
Q 011620 419 YIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLL 454 (481)
Q Consensus 419 ~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~ 454 (481)
|+||+||+||.|+.|.|++|+.+.+...+..+++..
T Consensus 375 y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 375 YIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred hhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 999999999999999999999999998888886643
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.2e-48 Score=396.89 Aligned_cols=367 Identities=28% Similarity=0.414 Sum_probs=286.8
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc---CCccEEEEccc
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPT 110 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~---~~~~~lil~P~ 110 (481)
.+++.+.+++.++||..|+|+|.++++.++.. .++++++.+|||+|||++|++|++..+..... .++++||++|+
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~--~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Pt 155 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 155 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCc
Confidence 38999999999999999999999999998831 26899999999999999999999998876542 24589999999
Q ss_pred HHHHHHHHHHHHHhccc----cCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHh
Q 011620 111 RDLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (481)
Q Consensus 111 ~~L~~q~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~ 186 (481)
++|+.|+++.+.++... .+..+..+.|+.........+. ..+++|+|+||+++..+
T Consensus 156 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------------~~~~~Iiv~Tp~~l~~~ 215 (563)
T 3i5x_A 156 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN--------------------KLRPNIVIATPGRLIDV 215 (563)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHH--------------------HHCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHh--------------------cCCCCEEEECcHHHHHH
Confidence 99999999999987532 2456777888877665543322 24679999999999988
Q ss_pred hhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcc
Q 011620 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (481)
Q Consensus 187 l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (481)
+.+.....+..+++||+||||++.+.++...+..++..+...... ..+.
T Consensus 216 l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~-------------------------------~~~~ 264 (563)
T 3i5x_A 216 LEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-------------------------------SADN 264 (563)
T ss_dssp HHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-------------------------------CTTC
T ss_pred HHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhcccc-------------------------------CccC
Confidence 876433457789999999999999988888888887766432210 0124
Q ss_pred eeeEEEeEEEecCcccccccccCCceeeecCC---ccccCCcccccceecccCC-CcH----HHHHHHHHh-cCCCcEEE
Q 011620 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE---TRYKLPERLESYKLICESK-LKP----LYLVALLQS-LGEEKCIV 337 (481)
Q Consensus 267 ~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~k~----~~l~~~l~~-~~~~~~lV 337 (481)
.+++++|||+++....+....+..+..+.... ........+.......... .+. ..+...+.. ..+.++||
T Consensus 265 ~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iV 344 (563)
T 3i5x_A 265 IKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAII 344 (563)
T ss_dssp CEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEE
Confidence 48999999998777777776666654433221 1111222222222222221 111 122222222 45679999
Q ss_pred EcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChh
Q 011620 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (481)
Q Consensus 338 f~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~ 417 (481)
||+++..++.+++.|.+....++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..
T Consensus 345 F~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~ 424 (563)
T 3i5x_A 345 FAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELA 424 (563)
T ss_dssp ECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTT
T ss_pred EcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchh
Confidence 99999999999999987633348899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhccc
Q 011620 418 TYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPL 453 (481)
Q Consensus 418 ~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~ 453 (481)
.|+||+||+||.|+.|.+++|+.+.+...+..+.+.
T Consensus 425 ~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 460 (563)
T 3i5x_A 425 NYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 460 (563)
T ss_dssp HHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred hhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHH
Confidence 999999999999999999999999999988888755
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.8e-48 Score=367.64 Aligned_cols=335 Identities=27% Similarity=0.433 Sum_probs=270.2
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
|++.+.++++++||.+|+|+|.++++.+.+ ++++++.+|||+|||++++.+++.. +.+++|++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHH
Confidence 578999999999999999999999999887 8899999999999999999988753 34799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcc
Q 011620 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~ 194 (481)
.|+++.+.++....+..+..++|+.......... ..++|+|+||+++...+.. ..+.
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~i~v~T~~~l~~~~~~-~~~~ 126 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV----------------------RNADIVVATPGRLLDLWSK-GVID 126 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH----------------------TTCSEEEECHHHHHHHHHT-TSCC
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc----------------------CCCCEEEECHHHHHHHHHc-CCcc
Confidence 9999999999888889999999987765543321 2369999999999998876 4456
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeE
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (481)
+.++++||+||||.+.+.++...+..++..... ..+.+++||
T Consensus 127 ~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~SA 168 (337)
T 2z0m_A 127 LSSFEIVIIDEADLMFEMGFIDDIKIILAQTSN--------------------------------------RKITGLFSA 168 (337)
T ss_dssp GGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTT--------------------------------------CSEEEEEES
T ss_pred hhhCcEEEEEChHHhhccccHHHHHHHHhhCCc--------------------------------------ccEEEEEeC
Confidence 788999999999999888777777766665432 226788999
Q ss_pred EEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhh
Q 011620 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~ 354 (481)
|++..........+..+..+..... ............... ......+....++++||||++++.++.+++.|.
T Consensus 169 T~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~- 241 (337)
T 2z0m_A 169 TIPEEIRKVVKDFITNYEEIEACIG----LANVEHKFVHVKDDW--RSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD- 241 (337)
T ss_dssp CCCHHHHHHHHHHSCSCEEEECSGG----GGGEEEEEEECSSSS--HHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT-
T ss_pred cCCHHHHHHHHHhcCCceeeecccc----cCCceEEEEEeChHH--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-
Confidence 9987766655555555444322211 111222222222222 233456666778899999999999999988875
Q ss_pred cCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCc
Q 011620 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~ 434 (481)
.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|+|...|.||+||+||.|+.|.
T Consensus 242 ------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~ 315 (337)
T 2z0m_A 242 ------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGE 315 (337)
T ss_dssp ------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEE
T ss_pred ------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCce
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCcchhhhhhccccc
Q 011620 435 CFTLLHKDEVCLVGCLTPLLL 455 (481)
Q Consensus 435 ~i~~~~~~~~~~~~~i~~~~~ 455 (481)
+++|+. .+...++.+.+.+.
T Consensus 316 ~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 316 AITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp EEEEES-SCHHHHHHHC----
T ss_pred EEEEEe-CcHHHHHHHHHHhc
Confidence 999999 88888888877664
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.9e-50 Score=399.53 Aligned_cols=354 Identities=23% Similarity=0.360 Sum_probs=157.3
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
+|++.+.+.+.++||..|+|+|.++++.++.. .++++++.+|||+|||++|+++++..+... ..++++||++|+++|
T Consensus 98 ~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-~~~~~~lil~Pt~~L 174 (479)
T 3fmp_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-NKYPQCLCLSPTYEL 174 (479)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTT-SCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhc-CCCCcEEEEeChHHH
Confidence 39999999999999999999999999998861 238999999999999999999999877654 345589999999999
Q ss_pred HHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCC
Q 011620 114 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~ 192 (481)
+.|+++.+..+.... ++.+....++...... ....++|+|+||+++..++.+.+.
T Consensus 175 a~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~Ivv~Tp~~l~~~l~~~~~ 230 (479)
T 3fmp_B 175 ALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGTPGTVLDWCSKLKF 230 (479)
T ss_dssp HHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT------------------------CCCCCSEEEECHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeCCcccccc------------------------ccCCCCEEEECchHHHHHHHhcCC
Confidence 999999999887643 5667666665543221 123468999999999999977666
Q ss_pred cccCCccEEEEecchhhhh-HhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEE
Q 011620 193 FTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (481)
Q Consensus 193 ~~~~~~~~iViDE~H~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (481)
+.+.++++||+||+|.+.+ ..+......+..... ...++++
T Consensus 231 ~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~ 272 (479)
T 3fmp_B 231 IDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------------------------------------RNCQMLL 272 (479)
T ss_dssp CCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC--------------------------------------TTSEEEE
T ss_pred cCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC--------------------------------------ccceEEE
Confidence 7788999999999999876 455555555554432 2338999
Q ss_pred EeEEEecCcccccccccCCceeeecCCccccCCcccccceeccc-CCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHH
Q 011620 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350 (481)
Q Consensus 272 ~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~ 350 (481)
+|||++.....+....+..+..+......... ..+.+....+. ...+...+..++.....+++||||+++..++.++.
T Consensus 273 ~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~ 351 (479)
T 3fmp_B 273 FSATFEDSVWKFAQKVVPDPNVIKLKREEETL-DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA 351 (479)
T ss_dssp EESCCCHHHHHHHHHHSSSEEEEEEC------------------------------------------------------
T ss_pred EeCCCCHHHHHHHHHHcCCCeEEeccccccCc-CCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHH
Confidence 99999887777777777777766554443222 22233333332 34566666677766677899999999999999999
Q ss_pred HHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCC------ChhhHHHHHh
Q 011620 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------YIKTYIHRAG 424 (481)
Q Consensus 351 ~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~------s~~~~~Q~~G 424 (481)
.|.+.+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|. +...|+||+|
T Consensus 352 ~L~~~~---~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~G 428 (479)
T 3fmp_B 352 ELSKEG---HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIG 428 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCC---ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhc
Confidence 998776 8899999999999999999999999999999999999999999999999999994 5689999999
Q ss_pred hhhcCCCCCcEEEEEeCCc-chhhhhhcccccc
Q 011620 425 RTARAGQLGRCFTLLHKDE-VCLVGCLTPLLLC 456 (481)
Q Consensus 425 R~~R~~~~g~~i~~~~~~~-~~~~~~i~~~~~~ 456 (481)
|+||.|+.|.+++|+++.+ ...+..+.+.+..
T Consensus 429 RagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~ 461 (479)
T 3fmp_B 429 RTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 461 (479)
T ss_dssp ---------------------------------
T ss_pred ccccCCCCceEEEEEcCcchHHHHHHHHHHhCC
Confidence 9999999999999998765 6666666665543
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-48 Score=385.30 Aligned_cols=355 Identities=22% Similarity=0.329 Sum_probs=243.1
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
++++.+.+.+.+.|+..|+++|.+|++.+++. .++++++.+|||+|||++|+++++..+..+ ..+++++|++|+++|
T Consensus 125 ~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~-~~~~~vLvl~P~~~L 201 (508)
T 3fho_A 125 XXXXXXXXXXXXXXXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDAS-VPKPQAICLAPSREL 201 (508)
T ss_dssp --------------CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTT-CCSCCEEEECSCHHH
T ss_pred ccccccccccccccccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhC-CCCceEEEEECcHHH
Confidence 47888999999999999999999999999872 238999999999999999999999887654 345589999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc
Q 011620 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
+.|+.+.+..+....++.+....++..... ...+++|+|+||+++...+.. ..+
T Consensus 202 ~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~Ivv~T~~~l~~~l~~-~~~ 255 (508)
T 3fho_A 202 ARQIMDVVTEMGKYTEVKTAFGIKDSVPKG-------------------------AKIDAQIVIGTPGTVMDLMKR-RQL 255 (508)
T ss_dssp HHHHHHHHHHHSTTSSCCEEC-----------------------------------CCCCSEEEECHHHHHHHHHT-TCS
T ss_pred HHHHHHHHHHhCCccCeeEEEEeCCccccc-------------------------ccCCCCEEEECHHHHHHHHHc-CCc
Confidence 999999999998766666555544432211 123579999999999998876 445
Q ss_pred ccCCccEEEEecchhhhh-HhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEE
Q 011620 194 TLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (481)
.+.++++||+||||.+.+ ..+...+..+...... ..+++++
T Consensus 256 ~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~--------------------------------------~~~~i~l 297 (508)
T 3fho_A 256 DARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPR--------------------------------------NTQIVLF 297 (508)
T ss_dssp CCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCT--------------------------------------TCEEEEE
T ss_pred cccCCCEEEEechhhhcccCCcHHHHHHHHHhCCc--------------------------------------CCeEEEE
Confidence 678899999999999876 4555555556555432 2388999
Q ss_pred eEEEecCcccccccccCCceeeecCCccccCCcccccceecc-cCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHH
Q 011620 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351 (481)
Q Consensus 273 Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~ 351 (481)
|||++.....+.......+..+.......... .+....... ....+...+..++....++++||||+++.+++.+++.
T Consensus 298 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~ 376 (508)
T 3fho_A 298 SATFSERVEKYAERFAPNANEIRLKTEELSVE-GIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARR 376 (508)
T ss_dssp ESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHH
T ss_pred eCCCCHHHHHHHHHhcCCCeEEEeccccCCcc-cceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHH
Confidence 99998767776666666665554433332222 222222222 3445666677777777788999999999999999999
Q ss_pred HhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCC------CChhhHHHHHhh
Q 011620 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGR 425 (481)
Q Consensus 352 l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p------~s~~~~~Q~~GR 425 (481)
|.+.+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.| .+...|+||+||
T Consensus 377 L~~~~---~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GR 453 (508)
T 3fho_A 377 MTADG---HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGR 453 (508)
T ss_dssp HTTTT---CCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSC
T ss_pred HHhCC---CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhh
Confidence 98766 789999999999999999999999999999999999999999999999999999 789999999999
Q ss_pred hhcCCCCCcEEEEEeC-Ccchhhhhhcccccchhh
Q 011620 426 TARAGQLGRCFTLLHK-DEVCLVGCLTPLLLCTSD 459 (481)
Q Consensus 426 ~~R~~~~g~~i~~~~~-~~~~~~~~i~~~~~~~~~ 459 (481)
+||.|+.|.+++|+.+ .+...+..+.+.+...-+
T Consensus 454 agR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~ 488 (508)
T 3fho_A 454 TGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPIT 488 (508)
T ss_dssp CC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC
T ss_pred cCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcc
Confidence 9999999999999984 566667777776655433
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.9e-46 Score=374.63 Aligned_cols=341 Identities=19% Similarity=0.269 Sum_probs=257.6
Q ss_pred CCHHHHHHHHH-cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 35 l~~~~~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
+++.+.+.|++ +||..|||+|.++++.+++ ++++++.+|||+|||++|++|++. .+.++||++|+++|
T Consensus 28 l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~-------~~g~~lVisP~~~L 96 (591)
T 2v1x_A 28 WSGKVKDILQNVFKLEKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC-------SDGFTLVICPLISL 96 (591)
T ss_dssp THHHHHHHHHHTSCCCSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT-------SSSEEEEECSCHHH
T ss_pred CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH-------cCCcEEEEeCHHHH
Confidence 89999999998 7999999999999999987 899999999999999999999874 23479999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHH---hhhcC
Q 011620 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMD---HINAT 190 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~---~l~~~ 190 (481)
+.|+.+.+..+ |+++..+.|+............ .......++|+|+||+++.. ++...
T Consensus 97 ~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~---------------l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l 157 (591)
T 2v1x_A 97 MEDQLMVLKQL----GISATMLNASSSKEHVKWVHAE---------------MVNKNSELKLIYVTPEKIAKSKMFMSRL 157 (591)
T ss_dssp HHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHH---------------HHCTTCCCCEEEECHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHH---------------hhcccCCCCEEEEChhHhhccHHHHHHH
Confidence 99999999987 7889999988766544221100 00013568999999998742 22110
Q ss_pred -CCcccCCccEEEEecchhhhhHh--HHhHHHH---HHHhcccCccccccccccccccccccchhhhhccccccCCCCCC
Q 011620 191 -RGFTLEHLCYLVVDETDRLLREA--YQAWLPT---VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264 (481)
Q Consensus 191 -~~~~~~~~~~iViDE~H~~~~~~--~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (481)
....+..+++|||||||.+.+.+ |...... +... +
T Consensus 158 ~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~---------------------------------------~ 198 (591)
T 2v1x_A 158 EKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ---------------------------------------F 198 (591)
T ss_dssp HHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH---------------------------------------C
T ss_pred HhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh---------------------------------------C
Confidence 12345678999999999986543 2211111 1111 1
Q ss_pred cceeeEEEeEEEecCcccccccccC--CceeeecCCccccCCcccccceecccCC---CcHHHHHHHHHh-cCCCcEEEE
Q 011620 265 PRLVKMVLSATLTQDPNKLAQLDLH--HPLFLTTGETRYKLPERLESYKLICESK---LKPLYLVALLQS-LGEEKCIVF 338 (481)
Q Consensus 265 ~~~~~i~~Sat~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~-~~~~~~lVf 338 (481)
+..+++++|||+++.........+. .+..+........ + .+....... .+...+...+.. ..++++|||
T Consensus 199 ~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~n----l-~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf 273 (591)
T 2v1x_A 199 PNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPN----L-YYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIY 273 (591)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTT----E-EEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEE
T ss_pred CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcc----c-EEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEE
Confidence 3448999999998665443333332 3333322221111 1 111111111 233445555543 356799999
Q ss_pred cCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhh
Q 011620 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (481)
Q Consensus 339 ~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~ 418 (481)
|++++.++.++..|.+.+ +.+..+|++++..+|..+++.|++|+.+|||||+++++|||+|++++||++++|.|...
T Consensus 274 ~~sr~~~e~la~~L~~~g---~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~ 350 (591)
T 2v1x_A 274 CFSQKDSEQVTVSLQNLG---IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMEN 350 (591)
T ss_dssp CSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHH
T ss_pred eCcHHHHHHHHHHHHHCC---CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHH
Confidence 999999999999999876 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcc
Q 011620 419 YIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTP 452 (481)
Q Consensus 419 ~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~ 452 (481)
|+|++||+||.|..|.|++|+.+.|...+..+..
T Consensus 351 y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~ 384 (591)
T 2v1x_A 351 YYQESGRAGRDDMKADCILYYGFGDIFRISSMVV 384 (591)
T ss_dssp HHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTT
T ss_pred HHHHhccCCcCCCCceEEEEEChHHHHHHHHHHh
Confidence 9999999999999999999999988887777654
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.4e-46 Score=369.67 Aligned_cols=341 Identities=21% Similarity=0.286 Sum_probs=261.8
Q ss_pred CCHHHHHHHHH-cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 35 l~~~~~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
+++.+.+.+++ +||..|||+|.++++.+++ ++++++.+|||+|||++|++|++.. +.+++|++|+++|
T Consensus 9 L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~~-------~g~~lvi~P~~aL 77 (523)
T 1oyw_A 9 LESGAKQVLQETFGYQQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALLL-------NGLTVVVSPLISL 77 (523)
T ss_dssp HHHHHHHHHHHTTCCSSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHS-------SSEEEEECSCHHH
T ss_pred CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHHHh-------CCCEEEECChHHH
Confidence 89999999998 9999999999999999987 8999999999999999999988732 2369999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc
Q 011620 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
+.|+.+.+..+ |+.+..+.++........... ......++|+++||+++...... ..+
T Consensus 78 ~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~-----------------~~~~~~~~ilv~Tpe~l~~~~~~-~~l 135 (523)
T 1oyw_A 78 MKDQVDQLQAN----GVAAACLNSTQTREQQLEVMT-----------------GCRTGQIRLLYIAPERLMLDNFL-EHL 135 (523)
T ss_dssp HHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHHTCCSEEEECHHHHTSTTHH-HHH
T ss_pred HHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHhcCCCCEEEECHHHHhChHHH-HHH
Confidence 99999999876 778888888776544322110 11224579999999998532111 112
Q ss_pred ccCCccEEEEecchhhhhHh--HHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEE
Q 011620 194 TLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (481)
...++++||+||||.+.+.+ +......+...... ++..++++
T Consensus 136 ~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~------------------------------------~~~~~~i~ 179 (523)
T 1oyw_A 136 AHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR------------------------------------FPTLPFMA 179 (523)
T ss_dssp TTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH------------------------------------CTTSCEEE
T ss_pred hhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh------------------------------------CCCCCEEE
Confidence 34678999999999985543 21111111110000 12347899
Q ss_pred EeEEEecCccccc--ccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHH
Q 011620 272 LSATLTQDPNKLA--QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349 (481)
Q Consensus 272 ~Sat~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~ 349 (481)
+|||+........ ...+..+........... ..........+...+...+....++++||||++++.++.++
T Consensus 180 lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~------l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~ 253 (523)
T 1oyw_A 180 LTATADDTTRQDIVRLLGLNDPLIQISSFDRPN------IRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTA 253 (523)
T ss_dssp EESCCCHHHHHHHHHHHTCCSCEEEECCCCCTT------EEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCc------eEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHH
Confidence 9999976544322 233344444433222111 11222233456677778887777789999999999999999
Q ss_pred HHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcC
Q 011620 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (481)
Q Consensus 350 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~ 429 (481)
+.|.+.+ +.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.|...|.||+||+||.
T Consensus 254 ~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~ 330 (523)
T 1oyw_A 254 ARLQSKG---ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD 330 (523)
T ss_dssp HHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTT
T ss_pred HHHHHCC---CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCC
Confidence 9999876 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEeCCcchhhhhhccc
Q 011620 430 GQLGRCFTLLHKDEVCLVGCLTPL 453 (481)
Q Consensus 430 ~~~g~~i~~~~~~~~~~~~~i~~~ 453 (481)
|..|.+++|+++.+...+..+.+.
T Consensus 331 g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 331 GLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp SSCEEEEEEECHHHHHHHHHHHHT
T ss_pred CCCceEEEEeCHHHHHHHHHHHhc
Confidence 999999999999888777766554
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.9e-44 Score=350.84 Aligned_cols=341 Identities=18% Similarity=0.256 Sum_probs=249.3
Q ss_pred HHHHHHHHH-cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHH
Q 011620 37 PRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 37 ~~~~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~ 115 (481)
+++.+.+++ +|| +|+|+|.++++.+++ ++++++.+|||+|||++++++++... ..+++++|++|+++|+.
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~----~~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA----RKGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH----TTTCCEEEEESSHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh----cCCCEEEEEECCHHHHH
Confidence 345566665 577 899999999999886 88999999999999999988877665 23568999999999999
Q ss_pred HHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccC-CcEEEeCChhHHHhhhcCCCcc
Q 011620 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 116 q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~I~v~T~~~l~~~l~~~~~~~ 194 (481)
|+++.+..++. .++++..++|+....+... .+..+..+ ++|+|+||+++..++.. +.
T Consensus 79 q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~------------------~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~ 136 (414)
T 3oiy_A 79 QTLERLQKLAD-EKVKIFGFYSSMKKEEKEK------------------FEKSFEEDDYHILVFSTQFVSKNREK---LS 136 (414)
T ss_dssp HHHHHHHHHCC-SSCCEEECCTTSCHHHHHH------------------HHHHHHHTCCSEEEEEHHHHHHCHHH---HT
T ss_pred HHHHHHHHHcc-CCceEEEEECCCChhhHHH------------------HHHHhhcCCCCEEEECHHHHHHHHHH---hc
Confidence 99999999988 7899999999987643211 11223333 89999999999888765 45
Q ss_pred cCCccEEEEecchhhhhH-----------hHHhH-HHHHHHhcccCccccccccccccccccccchhhhhccccccCCCC
Q 011620 195 LEHLCYLVVDETDRLLRE-----------AYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDK 262 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~-----------~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (481)
+.++++||+||||.+... ++... +..++..++.... ...+ .
T Consensus 137 ~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~-------------------------~~~l--~ 189 (414)
T 3oiy_A 137 QKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI-------------------------YERP--K 189 (414)
T ss_dssp TCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-------------------------CCCC--T
T ss_pred cccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchh-------------------------hhhc--c
Confidence 668999999999987642 22223 4445544431100 0000 0
Q ss_pred CCcceeeEEEeEEE-ecCcccc-cccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcC
Q 011620 263 PYPRLVKMVLSATL-TQDPNKL-AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (481)
Q Consensus 263 ~~~~~~~i~~Sat~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~ 340 (481)
.....+++++|||+ +...... ...... +..... ......+.+..... .+...+..++.. .++++||||+
T Consensus 190 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~i~~~~~~~---~~~~~l~~~l~~-~~~~~lVF~~ 260 (414)
T 3oiy_A 190 NLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRL-VSVARNITHVRISS---RSKEKLVELLEI-FRDGILIFAQ 260 (414)
T ss_dssp TCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCC-CCCCCSEEEEEESS---CCHHHHHHHHHH-HCSSEEEEES
T ss_pred cCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcc-ccccccchheeecc---CHHHHHHHHHHH-cCCCEEEEEC
Confidence 01344899999994 3333221 111111 111111 11122233333322 466667777776 4589999999
Q ss_pred CchhHHHHHHHHhhcCCcceEEE-EccCccChHHHHHHHHHHhcCCceEEEe----cccccccCCCCC-CCEEEEecCC-
Q 011620 341 SVESTHRLCTLLNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKP- 413 (481)
Q Consensus 341 s~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vLi~----t~~l~~Gidi~~-~~~vI~~~~p- 413 (481)
++..++.+++.|.+.+ +.+. .+||. +|. ++.|++|+.+|||| |+++++|+|+|+ +++||+++.|
T Consensus 261 ~~~~~~~l~~~L~~~~---~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~ 331 (414)
T 3oiy_A 261 TEEEGKELYEYLKRFK---FNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 331 (414)
T ss_dssp SHHHHHHHHHHHHHTT---CCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCT
T ss_pred CHHHHHHHHHHHHHcC---CceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCC
Confidence 9999999999999876 7887 88874 344 99999999999999 999999999999 9999999999
Q ss_pred -CChhhHHHHHhhhhcCC----CCCcEEEEEeCCcchhhhhhccccc
Q 011620 414 -AYIKTYIHRAGRTARAG----QLGRCFTLLHKDEVCLVGCLTPLLL 455 (481)
Q Consensus 414 -~s~~~~~Q~~GR~~R~~----~~g~~i~~~~~~~~~~~~~i~~~~~ 455 (481)
.+...|+||+||+||.| ..|.+++|+ .+...+..+.+.+.
T Consensus 332 ~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 332 GPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp TTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 99999999999999977 478888888 67777777777666
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.3e-42 Score=348.40 Aligned_cols=336 Identities=19% Similarity=0.213 Sum_probs=196.0
Q ss_pred CCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc-CCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
+..+|||+|.++++.+++ ++++++.+|||+|||++|+++++..+..... .+.++||++|+++|+.||.+.+.+++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp ----CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 345899999999999987 8899999999999999999999988876432 15689999999999999999999998
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEec
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE 205 (481)
...++.+..++|+........ .+..+++|+|+||+++...+.......+.++++||+||
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDE 138 (556)
T 4a2p_A 80 ERQGYSVQGISGENFSNVSVE---------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 138 (556)
T ss_dssp GGGTCCEEECCCC-----CHH---------------------HHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEET
T ss_pred cccCceEEEEeCCCCcchhHH---------------------HhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEEC
Confidence 888999999999875443221 12244699999999999998874432688899999999
Q ss_pred chhhhhHhHHhHH-HHHHHh-cccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccc-
Q 011620 206 TDRLLREAYQAWL-PTVLQL-TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK- 282 (481)
Q Consensus 206 ~H~~~~~~~~~~~-~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~- 282 (481)
||++.+.+....+ ..++.. .... .+..+++++|||+......
T Consensus 139 ah~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~l~lSAT~~~~~~~~ 183 (556)
T 4a2p_A 139 CHNTTGNHPYNVLMTRYLEQKFNSA-----------------------------------SQLPQILGLTASVGVGNAKN 183 (556)
T ss_dssp GGGCSTTSHHHHHHHHHHHHHHCC--------------------------------------CCEEEEEESCCCCTTCSS
T ss_pred CcccCCcchHHHHHHHHHHhhhccc-----------------------------------CCCCeEEEEeCCcccCchhh
Confidence 9998766543222 122211 1100 0234899999998532110
Q ss_pred c----------cc------------------cccCCceeeecCCccccCCcc----------------------------
Q 011620 283 L----------AQ------------------LDLHHPLFLTTGETRYKLPER---------------------------- 306 (481)
Q Consensus 283 ~----------~~------------------~~~~~~~~~~~~~~~~~~~~~---------------------------- 306 (481)
. .. .+...+......... .....
T Consensus 184 ~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (556)
T 4a2p_A 184 IEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR-RIHNPFAAIISNLMSETEALMRTIYSVDTLSQN 262 (556)
T ss_dssp HHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCC-CSCCHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCC-CcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 0 00 000011100000000 00000
Q ss_pred ----cc-----cc-------------------------------------------------------------------
Q 011620 307 ----LE-----SY------------------------------------------------------------------- 310 (481)
Q Consensus 307 ----~~-----~~------------------------------------------------------------------- 310 (481)
.. .+
T Consensus 263 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 342 (556)
T 4a2p_A 263 SKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPY 342 (556)
T ss_dssp --CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred cccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 00 00
Q ss_pred ----------------------eecccCCCcHHHHHHHHHh----cCCCcEEEEcCCchhHHHHHHHHhhcCC-------
Q 011620 311 ----------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE------- 357 (481)
Q Consensus 311 ----------------------~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~l~~~~~------- 357 (481)
........|...+..++.. ..+.++||||+++.+++.+++.|.+...
T Consensus 343 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~ 422 (556)
T 4a2p_A 343 TELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPG 422 (556)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEE
T ss_pred CHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeee
Confidence 0000023455556666643 4578999999999999999999987510
Q ss_pred --cceEEEEccCccChHHHHHHHHHHhc-CCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCc
Q 011620 358 --LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (481)
Q Consensus 358 --~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~ 434 (481)
.+.....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||+|++|+|+..|+||+|| ||. +.|.
T Consensus 423 ~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~ 500 (556)
T 4a2p_A 423 VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSK 500 (556)
T ss_dssp C------------------------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CC
T ss_pred EEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCce
Confidence 12344556788999999999999999 999999999999999999999999999999999999999999 998 7899
Q ss_pred EEEEEeCCcch
Q 011620 435 CFTLLHKDEVC 445 (481)
Q Consensus 435 ~i~~~~~~~~~ 445 (481)
+++++..++.+
T Consensus 501 ~~~l~~~~~~~ 511 (556)
T 4a2p_A 501 CILVTSKTEVV 511 (556)
T ss_dssp EEEEESCHHHH
T ss_pred EEEEEeCcchH
Confidence 99999887653
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.2e-41 Score=353.79 Aligned_cols=334 Identities=21% Similarity=0.283 Sum_probs=251.9
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHh-hhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQE-TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~-~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
+++.+.+.++++||..|+++|.++++. +.+ ++++++++|||+|||+++.++++..+... +.+++|++|+++|
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~----~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raL 80 (720)
T 2zj8_A 8 VDERIKSTLKERGIESFYPPQAEALKSGILE----GKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKAL 80 (720)
T ss_dssp SCHHHHHHHHHTTCCBCCHHHHHHHTTTGGG----TCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGG
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC----CCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHH
Confidence 999999999999999999999999887 444 89999999999999999999999877643 4589999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc
Q 011620 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
+.|+++.+..+.. .|+++..++|+...... ...+++|+|+||+++...+.... .
T Consensus 81 a~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~~~~~~-~ 134 (720)
T 2zj8_A 81 AEEKFQEFQDWEK-IGLRVAMATGDYDSKDE------------------------WLGKYDIIIATAEKFDSLLRHGS-S 134 (720)
T ss_dssp HHHHHHHTGGGGG-GTCCEEEECSCSSCCCG------------------------GGGGCSEEEECHHHHHHHHHHTC-T
T ss_pred HHHHHHHHHHHHh-cCCEEEEecCCCCcccc------------------------ccCCCCEEEECHHHHHHHHHcCh-h
Confidence 9999999976554 48899999987543221 11356999999999998887633 3
Q ss_pred ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEe
Q 011620 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (481)
.+.++++||+||+|.+.+..+...++.++..+.. ..+++++|
T Consensus 135 ~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~--------------------------------------~~~ii~lS 176 (720)
T 2zj8_A 135 WIKDVKILVADEIHLIGSRDRGATLEVILAHMLG--------------------------------------KAQIIGLS 176 (720)
T ss_dssp TGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT--------------------------------------TBEEEEEE
T ss_pred hhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc--------------------------------------CCeEEEEc
Confidence 4778999999999999887788888888877652 12899999
Q ss_pred EEEecCcccccccccCCceeeecCCccccCCcc--cccceeccc-----CCCcHHHHHHHHHhcCCCcEEEEcCCchhHH
Q 011620 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER--LESYKLICE-----SKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~ 346 (481)
||+++. ..+... +.... +........+... ......... .......+...+. .++++||||++++.++
T Consensus 177 ATl~n~-~~~~~~-l~~~~-~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~ 251 (720)
T 2zj8_A 177 ATIGNP-EELAEW-LNAEL-IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAE 251 (720)
T ss_dssp CCCSCH-HHHHHH-TTEEE-EECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHH
T ss_pred CCcCCH-HHHHHH-hCCcc-cCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHH
Confidence 998642 222221 11111 1110000000000 000000000 2334444555443 4689999999999999
Q ss_pred HHHHHHhhcCCc------------------------------ceEEEEccCccChHHHHHHHHHHhcCCceEEEeccccc
Q 011620 347 RLCTLLNHFGEL------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (481)
Q Consensus 347 ~l~~~l~~~~~~------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~ 396 (481)
.++..|.+.... ...+..+|++++..+|..+++.|++|+.+|||||++++
T Consensus 252 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~ 331 (720)
T 2zj8_A 252 RVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLS 331 (720)
T ss_dssp HHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTG
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhh
Confidence 999998753110 01388999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEE----ec----CCCChhhHHHHHhhhhcCC--CCCcEEEEEeCCcc
Q 011620 397 RGMDVEGVNNVVN----YD----KPAYIKTYIHRAGRTARAG--QLGRCFTLLHKDEV 444 (481)
Q Consensus 397 ~Gidi~~~~~vI~----~~----~p~s~~~~~Q~~GR~~R~~--~~g~~i~~~~~~~~ 444 (481)
.|+|+|++++||. |+ .|.|..+|.||+||+||.| ..|.|++++...+.
T Consensus 332 ~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 389 (720)
T 2zj8_A 332 AGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDP 389 (720)
T ss_dssp GGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCH
T ss_pred ccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccH
Confidence 9999999999998 55 5889999999999999987 46789999888763
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.2e-41 Score=350.94 Aligned_cols=333 Identities=21% Similarity=0.271 Sum_probs=244.8
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
+++++.+.++++||.+|+++|.++++.++. .++++++++|||+|||+++.+++++.+... +.+++|++|+++|+
T Consensus 15 l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~---~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~il~i~P~r~La 88 (715)
T 2va8_A 15 LPSNVIEIIKKRGIKKLNPPQTEAVKKGLL---EGNRLLLTSPTGSGKTLIAEMGIISFLLKN---GGKAIYVTPLRALT 88 (715)
T ss_dssp SCHHHHHHHHTTSCCBCCHHHHHHHHTTTT---TTCCEEEECCTTSCHHHHHHHHHHHHHHHS---CSEEEEECSCHHHH
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHhc---CCCcEEEEcCCCCcHHHHHHHHHHHHHHHC---CCeEEEEeCcHHHH
Confidence 999999999999999999999999887332 389999999999999999999998877632 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcc
Q 011620 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~ 194 (481)
.|+++.++.+.. .|+++...+|+....+. ...+++|+|+||+++...+.... ..
T Consensus 89 ~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~~~~~~-~~ 142 (715)
T 2va8_A 89 NEKYLTFKDWEL-IGFKVAMTSGDYDTDDA------------------------WLKNYDIIITTYEKLDSLWRHRP-EW 142 (715)
T ss_dssp HHHHHHHGGGGG-GTCCEEECCSCSSSCCG------------------------GGGGCSEEEECHHHHHHHHHHCC-GG
T ss_pred HHHHHHHHHhhc-CCCEEEEEeCCCCCchh------------------------hcCCCCEEEEcHHHHHHHHhCCh-hH
Confidence 999999965543 48899999887543321 11356999999999999887743 44
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeE
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (481)
+.++++||+||+|.+.+..++..++.++...+ ..+++++||
T Consensus 143 l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~---------------------------------------~~~ii~lSA 183 (715)
T 2va8_A 143 LNEVNYFVLDELHYLNDPERGPVVESVTIRAK---------------------------------------RRNLLALSA 183 (715)
T ss_dssp GGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH---------------------------------------TSEEEEEES
T ss_pred hhccCEEEEechhhcCCcccchHHHHHHHhcc---------------------------------------cCcEEEEcC
Confidence 78899999999999877677777777776654 128999999
Q ss_pred EEecCcccccccccCCceeeecCCccccCCccc----------cccee-----ccc-CCCcHHHHHHHHHhcCCCcEEEE
Q 011620 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL----------ESYKL-----ICE-SKLKPLYLVALLQSLGEEKCIVF 338 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-----~~~-~~~k~~~l~~~l~~~~~~~~lVf 338 (481)
|+.+ ...+... +..+.+ ........+...+ ...+. ... .......+...+. .++++|||
T Consensus 184 Tl~n-~~~~~~~-l~~~~~-~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF 258 (715)
T 2va8_A 184 TISN-YKQIAKW-LGAEPV-ATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVF 258 (715)
T ss_dssp CCTT-HHHHHHH-HTCEEE-ECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEE
T ss_pred CCCC-HHHHHHH-hCCCcc-CCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEE
Confidence 9863 2222221 111111 1000000000000 00000 000 1222333333332 46899999
Q ss_pred cCCchhHHHHHHHHhhcCCc---------------------------------ceEEEEccCccChHHHHHHHHHHhcCC
Q 011620 339 TSSVESTHRLCTLLNHFGEL---------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGK 385 (481)
Q Consensus 339 ~~s~~~~~~l~~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~ 385 (481)
|++++.++.++..|.+.... ...+..+||+++..+|..+++.|++|+
T Consensus 259 ~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~ 338 (715)
T 2va8_A 259 RNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRK 338 (715)
T ss_dssp CSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC
T ss_pred ECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999764211 024888999999999999999999999
Q ss_pred ceEEEecccccccCCCCCCCEEEE----ec-------CCCChhhHHHHHhhhhcCCC--CCcEEEEEeCCc
Q 011620 386 IQVLVSSDAMTRGMDVEGVNNVVN----YD-------KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDE 443 (481)
Q Consensus 386 ~~vLi~t~~l~~Gidi~~~~~vI~----~~-------~p~s~~~~~Q~~GR~~R~~~--~g~~i~~~~~~~ 443 (481)
.+|||||+++++|+|+|++++||. |+ .|.|..+|.||+||+||.|. .|.|++++...+
T Consensus 339 ~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 339 IKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp SCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred CeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 999999999999999999999998 88 79999999999999999874 678888887665
No 22
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=8e-42 Score=355.63 Aligned_cols=349 Identities=17% Similarity=0.155 Sum_probs=212.1
Q ss_pred HHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc-CCccEEEEcccHHHHHHHH
Q 011620 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVK 118 (481)
Q Consensus 40 ~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~-~~~~~lil~P~~~L~~q~~ 118 (481)
...++.+||.+||++|.++++.++. ++++++.+|||+|||++|++++++.+..... .+.+++|++|+++|+.|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHH
Confidence 3456778999999999999999887 8999999999999999999999988765431 2257999999999999999
Q ss_pred HHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCc
Q 011620 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL 198 (481)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~ 198 (481)
+.+.+++...++++..++|+........ .+..+++|+|+||++|.+.+.......+.++
T Consensus 79 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~---------------------~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 79 SVFSKYFERHGYRVTGISGATAENVPVE---------------------QIVENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp HHHHHHTTTTTCCEEEECSSSCSSSCHH---------------------HHHHTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred HHHHHHhccCCceEEEEeCCccccccHH---------------------HhccCCCEEEECHHHHHHHHhcCcccccccc
Confidence 9999998877899999998765332211 1224579999999999999887433267889
Q ss_pred cEEEEecchhhhhHhHHhH-HHHHHHh-cccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEE
Q 011620 199 CYLVVDETDRLLREAYQAW-LPTVLQL-TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276 (481)
Q Consensus 199 ~~iViDE~H~~~~~~~~~~-~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~ 276 (481)
++||+||||++........ +...+.. +... ..+..+++++|||+
T Consensus 138 ~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~----------------------------------~~~~~~il~LTATp 183 (696)
T 2ykg_A 138 TLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS----------------------------------SGPLPQVIGLTASV 183 (696)
T ss_dssp SEEEEETGGGCSTTCHHHHHHHHHHHHHHTTC----------------------------------CSCCCEEEEEESCC
T ss_pred cEEEEeCCCcccCcccHHHHHHHHHHHhhccc----------------------------------CCCCCeEEEEeCcc
Confidence 9999999999765432211 1112211 1000 01233788899998
Q ss_pred ecCcc--------cccc---------------------cccCCceeee--cCCccc------------------------
Q 011620 277 TQDPN--------KLAQ---------------------LDLHHPLFLT--TGETRY------------------------ 301 (481)
Q Consensus 277 ~~~~~--------~~~~---------------------~~~~~~~~~~--~~~~~~------------------------ 301 (481)
..... .+.. .+...|.... ......
T Consensus 184 ~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~ 263 (696)
T 2ykg_A 184 GVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKD 263 (696)
T ss_dssp CCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 52100 0000 0000000000 000000
Q ss_pred --cC----------------------------------------------------------------------------
Q 011620 302 --KL---------------------------------------------------------------------------- 303 (481)
Q Consensus 302 --~~---------------------------------------------------------------------------- 303 (481)
.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~ 343 (696)
T 2ykg_A 264 LENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFS 343 (696)
T ss_dssp GGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHH
Confidence 00
Q ss_pred ------Ccccccceec----------------ccCCCcHHHHHHHHHhc----CCCcEEEEcCCchhHHHHHHHHhhcCC
Q 011620 304 ------PERLESYKLI----------------CESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGE 357 (481)
Q Consensus 304 ------~~~~~~~~~~----------------~~~~~k~~~l~~~l~~~----~~~~~lVf~~s~~~~~~l~~~l~~~~~ 357 (481)
...+.+.... .....|...+..++... .++++||||+++..++.+++.|.+.+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~ 423 (696)
T 2ykg_A 344 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 423 (696)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTT
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCC
Confidence 0000000000 01344666677777654 567999999999999999999987642
Q ss_pred -cceEEEEc--------cCccChHHHHHHHHHHhc-CCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhh
Q 011620 358 -LRIKIKEY--------SGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (481)
Q Consensus 358 -~~~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~ 427 (481)
..+.+..+ |++++..+|.++++.|++ |+.+|||||+++++|+|+|++++||+||+|+++..|+||+|| |
T Consensus 424 ~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-G 502 (696)
T 2ykg_A 424 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 502 (696)
T ss_dssp CCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC--------
T ss_pred ccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-C
Confidence 12456666 669999999999999998 999999999999999999999999999999999999999999 9
Q ss_pred cCCCCCcEEEEEeCCcchhhhh
Q 011620 428 RAGQLGRCFTLLHKDEVCLVGC 449 (481)
Q Consensus 428 R~~~~g~~i~~~~~~~~~~~~~ 449 (481)
|. +.|.++.++..++......
T Consensus 503 R~-~~g~~~~l~~~~~~~~~~~ 523 (696)
T 2ykg_A 503 RA-RGSKCFLLTSNAGVIEKEQ 523 (696)
T ss_dssp ---CCCEEEEEESCHHHHHHHH
T ss_pred cC-CCceEEEEecCCCHHHHHH
Confidence 98 7899999998877644433
No 23
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.1e-40 Score=330.25 Aligned_cols=322 Identities=24% Similarity=0.280 Sum_probs=236.4
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
+|+|+|.+++..+++ + ++++.+|||+|||++++.++...+. ..+.++||++|+++|+.||.+++.++....+
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~---~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT---KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH---HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh---cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 799999999999886 4 9999999999999999998887765 2345799999999999999999999975445
Q ss_pred ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhh
Q 011620 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~ 209 (481)
..+..++|+........ ...+++|+|+||+++...+.. ..+.+.++++||+||||++
T Consensus 81 ~~v~~~~g~~~~~~~~~----------------------~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~ 137 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK----------------------AWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRA 137 (494)
T ss_dssp GGEEEECSCSCHHHHHH----------------------HHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGC
T ss_pred hheEEeeCCcchhhhhh----------------------hccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCccc
Confidence 58888888876554321 113469999999999998876 3456788999999999998
Q ss_pred hhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccccc---cc
Q 011620 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA---QL 286 (481)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~---~~ 286 (481)
.+......+...+.... +..+++++|||+..+...+. ..
T Consensus 138 ~~~~~~~~~~~~~~~~~--------------------------------------~~~~~l~lTaTp~~~~~~~~~l~~~ 179 (494)
T 1wp9_A 138 VGNYAYVFIAREYKRQA--------------------------------------KNPLVIGLTASPGSTPEKIMEVINN 179 (494)
T ss_dssp STTCHHHHHHHHHHHHC--------------------------------------SSCCEEEEESCSCSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhcC--------------------------------------CCCeEEEEecCCCCCcHHHHHHHHh
Confidence 75533333332222211 12378999999874322211 10
Q ss_pred ccCCceeeecCCcc---------------ccCCccc--------------------------------------------
Q 011620 287 DLHHPLFLTTGETR---------------YKLPERL-------------------------------------------- 307 (481)
Q Consensus 287 ~~~~~~~~~~~~~~---------------~~~~~~~-------------------------------------------- 307 (481)
.............. ...+...
T Consensus 180 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (494)
T 1wp9_A 180 LGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIIN 259 (494)
T ss_dssp TTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHH
T ss_pred cChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHH
Confidence 00000000000000 0000000
Q ss_pred --------------------------------------ccc-----------------------------------eecc
Q 011620 308 --------------------------------------ESY-----------------------------------KLIC 314 (481)
Q Consensus 308 --------------------------------------~~~-----------------------------------~~~~ 314 (481)
..+ ....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (494)
T 1wp9_A 260 EEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIG 339 (494)
T ss_dssp HHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred HHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcC
Confidence 000 0000
Q ss_pred cCCCcHHHHHHHHHh----cCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccC--------ccChHHHHHHHHHHh
Q 011620 315 ESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG--------LQRQSVRSKTLKAFR 382 (481)
Q Consensus 315 ~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~--------~~~~~~r~~~~~~f~ 382 (481)
....|...+..++.. ..+.++||||+++..++.+++.|.+.+ +.+..+|| +++..+|.++++.|+
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~ 416 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG---IKAKRFVGQASKENDRGLSQREQKLILDEFA 416 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT---CCEEEECCSSCC-------CCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcC---CCcEEEeccccccccccCCHHHHHHHHHHHh
Confidence 234456666677765 467899999999999999999999876 88999999 999999999999999
Q ss_pred cCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 383 ~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
+|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||++|.|+ |.++.++.+++.
T Consensus 417 ~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 417 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp HTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred cCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 9999999999999999999999999999999999999999999999987 999999988654
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2e-41 Score=351.23 Aligned_cols=336 Identities=24% Similarity=0.304 Sum_probs=248.1
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
+++.+.+.++++||.+|+|+|.++++.+.+ ++++++++|||+|||+++.++++..+.. +.+++|++|+++|+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~l~i~P~r~La 81 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPLRALA 81 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESSHHHH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHhC----CCcEEEEcCCccHHHHHHHHHHHHHHHh----CCcEEEEeCcHHHH
Confidence 788999999999999999999999998765 8999999999999999999999887653 34799999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcc
Q 011620 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~ 194 (481)
.|+++.++.+.. .|+++...+|+....+. ...+++|+|+||+++...+.... ..
T Consensus 82 ~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~l~~~~-~~ 135 (702)
T 2p6r_A 82 GEKYESFKKWEK-IGLRIGISTGDYESRDE------------------------HLGDCDIIVTTSEKADSLIRNRA-SW 135 (702)
T ss_dssp HHHHHHHTTTTT-TTCCEEEECSSCBCCSS------------------------CSTTCSEEEEEHHHHHHHHHTTC-SG
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCCCcchh------------------------hccCCCEEEECHHHHHHHHHcCh-hH
Confidence 999999965543 48899999887643221 11357999999999999888743 34
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeE
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (481)
+.++++||+||+|.+.+..+...++.++..+.... +..+++++||
T Consensus 136 l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~-----------------------------------~~~~ii~lSA 180 (702)
T 2p6r_A 136 IKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN-----------------------------------KALRVIGLSA 180 (702)
T ss_dssp GGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC-----------------------------------TTCEEEEEEC
T ss_pred HhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcC-----------------------------------cCceEEEECC
Confidence 77899999999999988777777777776654211 2348999999
Q ss_pred EEecCcccccccccCCceeeecCCccccCCccc--c-cceecc------cCCCcHHHHHHHHHhcCCCcEEEEcCCchhH
Q 011620 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--E-SYKLIC------ESKLKPLYLVALLQSLGEEKCIVFTSSVEST 345 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~------~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~ 345 (481)
|+++ ...+.. ++..+.+ ........+...+ . ...... ........+...+. .++++||||++++.+
T Consensus 181 Tl~n-~~~~~~-~l~~~~~-~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~ 255 (702)
T 2p6r_A 181 TAPN-VTEIAE-WLDADYY-VSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGA 255 (702)
T ss_dssp CCTT-HHHHHH-HTTCEEE-ECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHH
T ss_pred CcCC-HHHHHH-HhCCCcc-cCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHH
Confidence 9863 333222 1222211 1111110000000 0 000000 00013334444443 468999999999999
Q ss_pred HHHHHHHhhcCCc---------------------------ceEEEEccCccChHHHHHHHHHHhcCCceEEEeccccccc
Q 011620 346 HRLCTLLNHFGEL---------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398 (481)
Q Consensus 346 ~~l~~~l~~~~~~---------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~G 398 (481)
+.++..|.+.... ...+..+||+++..+|..+++.|++|+.+|||||++++.|
T Consensus 256 ~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~G 335 (702)
T 2p6r_A 256 EKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAG 335 (702)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSS
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhcc
Confidence 9999988753100 1247789999999999999999999999999999999999
Q ss_pred CCCCCCCEEEE----ec---CCCChhhHHHHHhhhhcCC--CCCcEEEEEeCCcc
Q 011620 399 MDVEGVNNVVN----YD---KPAYIKTYIHRAGRTARAG--QLGRCFTLLHKDEV 444 (481)
Q Consensus 399 idi~~~~~vI~----~~---~p~s~~~~~Q~~GR~~R~~--~~g~~i~~~~~~~~ 444 (481)
+|+|++++||. |+ .|.|..+|.||+||+||.| ..|.|++++...+.
T Consensus 336 idip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 336 VNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp SCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred CCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 99999999998 55 6899999999999999987 46788998887663
No 25
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=5.8e-41 Score=352.01 Aligned_cols=339 Identities=19% Similarity=0.192 Sum_probs=202.6
Q ss_pred HcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc-CCccEEEEcccHHHHHHHHHHHHH
Q 011620 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~-~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
-+|+..|||+|.++++.+++ ++++++.+|||+|||++|+++++..+..... .+.++||++|+++|+.|+.+.+.+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 35788999999999999887 8999999999999999999999988876421 156899999999999999999999
Q ss_pred hccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEE
Q 011620 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iVi 203 (481)
++...++++..++|+........ .+..+++|+|+||+++...+.......+.++++||+
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVE---------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHH---------------------HHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred hcccCCceEEEEeCCcchhhhHH---------------------HhhCCCCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 98888999999999875443221 233567999999999999988644336888999999
Q ss_pred ecchhhhhHhHHhH-HHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcc-
Q 011620 204 DETDRLLREAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN- 281 (481)
Q Consensus 204 DE~H~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~- 281 (481)
||||++........ +..++...... ..+..+++++|||+.....
T Consensus 378 DEaH~~~~~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~l~lSATp~~~~~~ 423 (797)
T 4a2q_A 378 DECHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNAK 423 (797)
T ss_dssp TTGGGCSTTSHHHHHHHHHHHHHHTT----------------------------------CCCCCEEEEEESCCCCTTCC
T ss_pred ECccccCCCccHHHHHHHHHHHhhcc----------------------------------CCCCCeEEEEcCCccccccc
Confidence 99999876543222 22222211100 0123489999999853210
Q ss_pred ----------ccc------------------ccccCCceeee--cCCccc-c---------------------------C
Q 011620 282 ----------KLA------------------QLDLHHPLFLT--TGETRY-K---------------------------L 303 (481)
Q Consensus 282 ----------~~~------------------~~~~~~~~~~~--~~~~~~-~---------------------------~ 303 (481)
.+. ..++..+.... ...... . .
T Consensus 424 ~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~ 503 (797)
T 4a2q_A 424 NIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQN 503 (797)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC---------
T ss_pred cHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Confidence 000 00001111000 000000 0 0
Q ss_pred Cc---cc---ccce------------------------------------------------------------------
Q 011620 304 PE---RL---ESYK------------------------------------------------------------------ 311 (481)
Q Consensus 304 ~~---~~---~~~~------------------------------------------------------------------ 311 (481)
+. .. ..+.
T Consensus 504 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 583 (797)
T 4a2q_A 504 SKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPY 583 (797)
T ss_dssp ---CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCc
Confidence 00 00 0000
Q ss_pred -----------------------ecccCCCcHHHHHHHHHh----cCCCcEEEEcCCchhHHHHHHHHhhcCC-------
Q 011620 312 -----------------------LICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE------- 357 (481)
Q Consensus 312 -----------------------~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~l~~~~~------- 357 (481)
.......|...+..++.. ..+.++||||+++..++.+++.|.+...
T Consensus 584 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~ 663 (797)
T 4a2q_A 584 TELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPG 663 (797)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCE
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccce
Confidence 000023355556666654 4568999999999999999999987410
Q ss_pred --cceEEEEccCccChHHHHHHHHHHhc-CCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCc
Q 011620 358 --LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (481)
Q Consensus 358 --~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~ 434 (481)
.+.....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||+|++|+|+..|+||+|| ||. +.|.
T Consensus 664 ~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~ 741 (797)
T 4a2q_A 664 VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSK 741 (797)
T ss_dssp EC----------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCC
T ss_pred EEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCce
Confidence 12445567889999999999999999 999999999999999999999999999999999999999999 998 7899
Q ss_pred EEEEEeCCcc
Q 011620 435 CFTLLHKDEV 444 (481)
Q Consensus 435 ~i~~~~~~~~ 444 (481)
++.|+..++.
T Consensus 742 ~i~l~~~~~~ 751 (797)
T 4a2q_A 742 CILVTSKTEV 751 (797)
T ss_dssp EEEEECCHHH
T ss_pred EEEEEeCCcH
Confidence 9999988665
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=5.6e-41 Score=340.91 Aligned_cols=340 Identities=18% Similarity=0.193 Sum_probs=222.2
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc-cCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (481)
+|+|+|.++++.+++ ++++++.+|||+|||++|+++++..+.... ..+.++||++|+++|+.|+.+.+.+++...
T Consensus 4 ~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 799999999999886 899999999999999999999998887642 125689999999999999999999998888
Q ss_pred CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh
Q 011620 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~ 208 (481)
++.+..++|+........ .+..+++|+|+||+++...+.......+.++++||+||||+
T Consensus 80 ~~~~~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~ 138 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQ---------------------HIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHN 138 (555)
T ss_dssp TCCEEEECTTTGGGSCHH---------------------HHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGG
T ss_pred CcEEEEEcCCCcchhhHH---------------------HHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccc
Confidence 999999999875443221 12244699999999999998874433688899999999999
Q ss_pred hhhHhHH-hHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccc-----
Q 011620 209 LLREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK----- 282 (481)
Q Consensus 209 ~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~----- 282 (481)
+...... ..+..++....... ..+..+++++|||+......
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~l~lSAT~~~~~~~~~~~~ 185 (555)
T 3tbk_A 139 TSKNHPYNQIMFRYLDHKLGES---------------------------------RDPLPQVVGLTASVGVGDAKTAEEA 185 (555)
T ss_dssp CSTTCHHHHHHHHHHHHHTSSC---------------------------------CSCCCEEEEEESCCCCTTCCSHHHH
T ss_pred cCCcchHHHHHHHHHHhhhccc---------------------------------cCCCCeEEEEecCcccCccccHHHH
Confidence 8776432 22222222211100 01234899999999543200
Q ss_pred ---c---cc------------------cccCCceeeecCCccccCCcc--------------------------------
Q 011620 283 ---L---AQ------------------LDLHHPLFLTTGETRYKLPER-------------------------------- 306 (481)
Q Consensus 283 ---~---~~------------------~~~~~~~~~~~~~~~~~~~~~-------------------------------- 306 (481)
+ .. .+...+......... .....
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 264 (555)
T 3tbk_A 186 MQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVAS-RTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNR 264 (555)
T ss_dssp HHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCC-CSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSC
T ss_pred HHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecC-cccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 0 00 000001000000000 00000
Q ss_pred ----------cc------------------------------------------------------cc------------
Q 011620 307 ----------LE------------------------------------------------------SY------------ 310 (481)
Q Consensus 307 ----------~~------------------------------------------------------~~------------ 310 (481)
.. .+
T Consensus 265 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (555)
T 3tbk_A 265 EFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDET 344 (555)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----H
T ss_pred cccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchH
Confidence 00 00
Q ss_pred -------------------eecccCCCcHHHHHHHHHh----cCCCcEEEEcCCchhHHHHHHHHhhcCC---------c
Q 011620 311 -------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE---------L 358 (481)
Q Consensus 311 -------------------~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~l~~~~~---------~ 358 (481)
........|...+..++.. ..+.++||||+++.+++.+++.|.+.+. .
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 424 (555)
T 3tbk_A 345 ERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILT 424 (555)
T ss_dssp HHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECC
T ss_pred HHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEE
Confidence 0000123455555555544 3568999999999999999999987531 0
Q ss_pred ceEEEEccCccChHHHHHHHHHHhc-CCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEE
Q 011620 359 RIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437 (481)
Q Consensus 359 ~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~ 437 (481)
+.....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||+|++|+|+..|+||+|| ||. +.|.+++
T Consensus 425 g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~ 502 (555)
T 3tbk_A 425 GRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFL 502 (555)
T ss_dssp C--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEE
T ss_pred ecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEE
Confidence 1233445679999999999999999 999999999999999999999999999999999999999999 898 7899999
Q ss_pred EEeCCcchhhhhh
Q 011620 438 LLHKDEVCLVGCL 450 (481)
Q Consensus 438 ~~~~~~~~~~~~i 450 (481)
|+.+.+.+....+
T Consensus 503 l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 503 LTSSADVIEKEKA 515 (555)
T ss_dssp EESCHHHHHHHHH
T ss_pred EEcCCCHHHHHHH
Confidence 9988776544433
No 27
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=6.8e-40 Score=349.28 Aligned_cols=335 Identities=19% Similarity=0.272 Sum_probs=244.5
Q ss_pred HcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.+|| +|+|+|.++++.+++ +++++++||||+|||++++.+++..+ ..+++++|++||++|+.|+++.+..+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~----~~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA----RKGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH----TTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH----hcCCeEEEEechHHHHHHHHHHHHHh
Confidence 3688 799999999999887 89999999999999998888877766 23568999999999999999999998
Q ss_pred ccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccC-CcEEEeCChhHHHhhhcCCCcccCCccEEEE
Q 011620 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~I~v~T~~~l~~~l~~~~~~~~~~~~~iVi 203 (481)
+ ..++++..++|+....+... .++.+..+ ++|+|+||++|.+++.. +.+.++++||+
T Consensus 145 ~-~~~i~v~~l~Gg~~~~er~~------------------~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lVi 202 (1104)
T 4ddu_A 145 A-DEKVKIFGFYSSMKKEEKEK------------------FEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFV 202 (1104)
T ss_dssp S-CTTSCEEEECTTCCTTHHHH------------------HHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEE
T ss_pred h-CCCCeEEEEeCCCCHHHHHH------------------HHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEE
Confidence 7 66899999999987632211 11223343 89999999999888764 55778999999
Q ss_pred ecchhhhh-----------HhHHhH-HHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEE
Q 011620 204 DETDRLLR-----------EAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (481)
Q Consensus 204 DE~H~~~~-----------~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (481)
||||.+.. .++... +..++..++.... .... ......++++
T Consensus 203 DEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~-------------------------~~~~--~~~~~~q~ll 255 (1104)
T 4ddu_A 203 DDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI-------------------------YERP--KNLKPGILVV 255 (1104)
T ss_dssp SCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSC-------------------------CCCC--SSCCCCEEEE
T ss_pred eCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchh-------------------------hhhh--ccCCCceEEE
Confidence 99998764 223333 4555554431100 0000 0003448999
Q ss_pred EeEEEe-cCcccc-cccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHH
Q 011620 272 LSATLT-QDPNKL-AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349 (481)
Q Consensus 272 ~Sat~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~ 349 (481)
+|||+. ...... ....+. +...... .....+.+....+ .+...+..++... ++++||||+++..++.++
T Consensus 256 ~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~---~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~ 326 (1104)
T 4ddu_A 256 SSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEEEGKELY 326 (1104)
T ss_dssp ECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC---CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHH
T ss_pred EcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec---CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHH
Confidence 999953 332221 111111 1111111 1222333333333 4666777777763 489999999999999999
Q ss_pred HHHhhcCCcceEEE-EccCccChHHHHHHHHHHhcCCceEEEe----cccccccCCCCC-CCEEEEecCCC---------
Q 011620 350 TLLNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKPA--------- 414 (481)
Q Consensus 350 ~~l~~~~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vLi~----t~~l~~Gidi~~-~~~vI~~~~p~--------- 414 (481)
..|.+.+ +.+. .+||. |.+ ++.|++|+.+|||| |+++++|+|+|+ +++||++|.|.
T Consensus 327 ~~L~~~g---~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~ 397 (1104)
T 4ddu_A 327 EYLKRFK---FNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDK 397 (1104)
T ss_dssp HHHHHTT---CCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSS
T ss_pred HHHHhCC---CCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCccccc
Confidence 9999876 7887 88882 555 99999999999999 999999999999 99999999998
Q ss_pred ---------------------------------------------------------------ChhhHHHHHhhhhcCCC
Q 011620 415 ---------------------------------------------------------------YIKTYIHRAGRTARAGQ 431 (481)
Q Consensus 415 ---------------------------------------------------------------s~~~~~Q~~GR~~R~~~ 431 (481)
+..+|+||+||+||.+.
T Consensus 398 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~ 477 (1104)
T 4ddu_A 398 APRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILN 477 (1104)
T ss_dssp CCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEET
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccC
Confidence 66789999999999543
Q ss_pred --CCcEEEEEeCCcchhhhhhccccc
Q 011620 432 --LGRCFTLLHKDEVCLVGCLTPLLL 455 (481)
Q Consensus 432 --~g~~i~~~~~~~~~~~~~i~~~~~ 455 (481)
.+.++.++..+|.+.++.|.+.+.
T Consensus 478 gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 478 GVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp TEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred CCcccceEEEEEecHHHHHHHHHHHh
Confidence 335566666688888888887775
No 28
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-40 Score=355.03 Aligned_cols=329 Identities=18% Similarity=0.182 Sum_probs=238.3
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
+++.+...+...++..|+++|.+|++.+.+ ++++++++|||+|||++|.++++..+.. +.+++|++|+++|+
T Consensus 169 l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~----g~dvLV~ApTGSGKTlva~l~i~~~l~~----g~rvlvl~PtraLa 240 (1108)
T 3l9o_A 169 IAEHKRVNEARTYPFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALS 240 (1108)
T ss_dssp TTTTCCCSCSSCCSSCCCHHHHHHHHHHTT----TCCEEEECCSSSHHHHHHHHHHHHHHHT----TCEEEEEESSHHHH
T ss_pred CChhhhHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEcCcHHHH
Confidence 334333344444555899999999999876 8999999999999999999999887743 45899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcc
Q 011620 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~ 194 (481)
.|+++.+..+.. .++.++|+.. +..+++|+|+||++|.+.+... ...
T Consensus 241 ~Q~~~~l~~~~~----~VglltGd~~----------------------------~~~~~~IlV~Tpe~L~~~L~~~-~~~ 287 (1108)
T 3l9o_A 241 NQKYRELLAEFG----DVGLMTGDIT----------------------------INPDAGCLVMTTEILRSMLYRG-SEV 287 (1108)
T ss_dssp HHHHHHHHHHTS----SEEEECSSCB----------------------------CCCSCSEEEEEHHHHHHHHHHC-SSH
T ss_pred HHHHHHHHHHhC----CccEEeCccc----------------------------cCCCCCEEEeChHHHHHHHHcC-ccc
Confidence 999999998864 5777777754 2244699999999999988874 345
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeE
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (481)
+.++++|||||||++.+.+++..+..++..++ ...+++++||
T Consensus 288 l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~--------------------------------------~~~qvl~lSA 329 (1108)
T 3l9o_A 288 MREVAWVIFDEVHYMRDKERGVVWEETIILLP--------------------------------------DKVRYVFLSA 329 (1108)
T ss_dssp HHHEEEEEEETGGGTTSHHHHHHHHHHHHHSC--------------------------------------TTSEEEEEEC
T ss_pred cccCCEEEEhhhhhccccchHHHHHHHHHhcC--------------------------------------CCceEEEEcC
Confidence 78899999999999999998888888887664 2338999999
Q ss_pred EEecCcc--cccccccCCceeeecCC-ccccCCc-----ccccceeccc-------------------------------
Q 011620 275 TLTQDPN--KLAQLDLHHPLFLTTGE-TRYKLPE-----RLESYKLICE------------------------------- 315 (481)
Q Consensus 275 t~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~------------------------------- 315 (481)
|+++... .+.......+..+.... ....+.. ..........
T Consensus 330 Tipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 409 (1108)
T 3l9o_A 330 TIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSR 409 (1108)
T ss_dssp SCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--------------
T ss_pred CCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccc
Confidence 9865433 22222222222221111 1000000 0000000000
Q ss_pred ---------------CCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCc----------------------
Q 011620 316 ---------------SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL---------------------- 358 (481)
Q Consensus 316 ---------------~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~---------------------- 358 (481)
...+...+...+.....+++||||+++..++.++..|...+..
T Consensus 410 ~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~ 489 (1108)
T 3l9o_A 410 GKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPET 489 (1108)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchh
Confidence 0112222344444556679999999999999999988653210
Q ss_pred --------------ceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecC--------CCCh
Q 011620 359 --------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK--------PAYI 416 (481)
Q Consensus 359 --------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~--------p~s~ 416 (481)
...+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||+++. |.|.
T Consensus 490 d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~ 569 (1108)
T 3l9o_A 490 DRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 569 (1108)
T ss_dssp TTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCH
T ss_pred hhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCH
Confidence 012788999999999999999999999999999999999999999999997664 3467
Q ss_pred hhHHHHHhhhhcCC--CCCcEEEEEeCC
Q 011620 417 KTYIHRAGRTARAG--QLGRCFTLLHKD 442 (481)
Q Consensus 417 ~~~~Q~~GR~~R~~--~~g~~i~~~~~~ 442 (481)
.+|+||+||+||.| ..|.|++++++.
T Consensus 570 ~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 570 GEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp HHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred HHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 78999999999998 567788877765
No 29
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-39 Score=341.26 Aligned_cols=324 Identities=19% Similarity=0.201 Sum_probs=239.9
Q ss_pred HHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 011620 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 44 ~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
..++| +|+++|.+|++.+.+ +++++|.+|||+|||++|.++++..+.. +.+++|++|+++|+.|+++.+..
T Consensus 81 ~~~~f-~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~~----g~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 81 RTYPF-TLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp CCCSS-CCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHHT----TCEEEEEESSHHHHHHHHHHHHH
T ss_pred HhCCC-CCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhcc----CCeEEEECChHHHHHHHHHHHHH
Confidence 44677 599999999999876 8899999999999999999988877643 45899999999999999999998
Q ss_pred hccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEE
Q 011620 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iVi 203 (481)
+.. .++.++|+.... ..++|+|+||++|.+.+.+. ...+.++++||+
T Consensus 152 ~~~----~vglltGd~~~~----------------------------~~~~IvV~Tpe~L~~~L~~~-~~~l~~l~lVVi 198 (1010)
T 2xgj_A 152 EFG----DVGLMTGDITIN----------------------------PDAGCLVMTTEILRSMLYRG-SEVMREVAWVIF 198 (1010)
T ss_dssp HHS----CEEEECSSCEEC----------------------------TTCSEEEEEHHHHHHHHHHT-CTTGGGEEEEEE
T ss_pred HhC----CEEEEeCCCccC----------------------------CCCCEEEEcHHHHHHHHHcC-cchhhcCCEEEE
Confidence 754 677788876422 34689999999999888763 355789999999
Q ss_pred ecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccc-
Q 011620 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK- 282 (481)
Q Consensus 204 DE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~- 282 (481)
||+|.+.+..++..++.++..++ ...+++++|||+++....
T Consensus 199 DEaH~l~d~~rg~~~e~il~~l~--------------------------------------~~~~il~LSATi~n~~e~a 240 (1010)
T 2xgj_A 199 DEVHYMRDKERGVVWEETIILLP--------------------------------------DKVRYVFLSATIPNAMEFA 240 (1010)
T ss_dssp ETGGGGGCTTTHHHHHHHHHHSC--------------------------------------TTCEEEEEECCCTTHHHHH
T ss_pred echhhhcccchhHHHHHHHHhcC--------------------------------------CCCeEEEEcCCCCCHHHHH
Confidence 99999988877777777776553 223899999998643221
Q ss_pred -ccccccCCceeeecCCccccCCcccccceec---------cc-------------------------------------
Q 011620 283 -LAQLDLHHPLFLTTGETRYKLPERLESYKLI---------CE------------------------------------- 315 (481)
Q Consensus 283 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~------------------------------------- 315 (481)
+.......+..+....... ....++... ..
T Consensus 241 ~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~ 317 (1010)
T 2xgj_A 241 EWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQT 317 (1010)
T ss_dssp HHHHHHHTSCEEEEEECCCS---SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-------------------
T ss_pred HHHHhhcCCCeEEEecCCCc---ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccc
Confidence 1111111122111110000 000000000 00
Q ss_pred -C--------CCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCc----------------------------
Q 011620 316 -S--------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL---------------------------- 358 (481)
Q Consensus 316 -~--------~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~---------------------------- 358 (481)
. ......+...+......++||||+++..++.++..|...+-.
T Consensus 318 ~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~ 397 (1010)
T 2xgj_A 318 YKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQ 397 (1010)
T ss_dssp -----------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHH
T ss_pred cccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchh
Confidence 0 112233445555556679999999999999999988763210
Q ss_pred --------ceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEE----ecC----CCChhhHHHH
Q 011620 359 --------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YDK----PAYIKTYIHR 422 (481)
Q Consensus 359 --------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~----~~~----p~s~~~~~Q~ 422 (481)
...+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||+ |+. |.++..|.||
T Consensus 398 ~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr 477 (1010)
T 2xgj_A 398 IKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQM 477 (1010)
T ss_dssp HHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHH
T ss_pred HHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHh
Confidence 123788999999999999999999999999999999999999999999999 888 8899999999
Q ss_pred HhhhhcCCC--CCcEEEEEeCC-cchhhhhh
Q 011620 423 AGRTARAGQ--LGRCFTLLHKD-EVCLVGCL 450 (481)
Q Consensus 423 ~GR~~R~~~--~g~~i~~~~~~-~~~~~~~i 450 (481)
+||+||.|. .|.|++++++. +...+..+
T Consensus 478 ~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 478 SGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp HTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred hhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 999999986 48999999865 33344443
No 30
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.5e-39 Score=347.17 Aligned_cols=338 Identities=20% Similarity=0.285 Sum_probs=249.3
Q ss_pred HHHH-HcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHH
Q 011620 41 VALQ-NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (481)
Q Consensus 41 ~~l~-~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~ 119 (481)
+.+. .+||. | ++|.++++.+++ ++++++.+|||||||+ +.++++..+.. .+++++|++||++|+.|+++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl-~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILR----KESFAATAPTGVGKTS-FGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHT----TCCEECCCCBTSCSHH-HHHHHHHHHHT---TSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHh----CCCEEEEcCCCCCHHH-HHHHHHHHHhh---cCCeEEEEeccHHHHHHHHH
Confidence 3343 48998 9 999999999997 8999999999999998 77777776654 35689999999999999999
Q ss_pred HHHHhccccCc----eEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCccc
Q 011620 120 VFAAIAPAVGL----SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195 (481)
Q Consensus 120 ~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~ 195 (481)
.+..++...++ .+..++|+......... .+.+.. ++|+|+||++|.+++.. +
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~------------------~~~l~~-~~IlV~TP~~L~~~l~~-----L 173 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENF------------------MQNLRN-FKIVITTTQFLSKHYRE-----L 173 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHH------------------HHSGGG-CSEEEEEHHHHHHCSTT-----S
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHH------------------HhhccC-CCEEEEcHHHHHHHHHH-----h
Confidence 99999887788 89999998876653211 122334 79999999999998765 5
Q ss_pred CCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEE
Q 011620 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (481)
Q Consensus 196 ~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat 275 (481)
.++++||+||||.+.+ +...+..++..+....... . .......+.+++|||
T Consensus 174 ~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~--------~-------------------~~~~~~~q~~l~SAT 224 (1054)
T 1gku_B 174 GHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLK--------T-------------------KSWVGEARGCLMVST 224 (1054)
T ss_dssp CCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETT--------T-------------------TEEEECCSSEEEECC
T ss_pred ccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhh--------h-------------------hhcccCCceEEEEec
Confidence 5899999999999877 4566666666543110000 0 000123478999999
Q ss_pred EecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhc
Q 011620 276 LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355 (481)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~ 355 (481)
.+.. .......+..+..+........ ...+.+... ...+...+..++... ++++||||+++..++.+++.|.+.
T Consensus 225 ~t~~-~~~~~~~~~~~~~i~v~~~~~~-~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~ 298 (1054)
T 1gku_B 225 ATAK-KGKKAELFRQLLNFDIGSSRIT-VRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK 298 (1054)
T ss_dssp CCSC-CCTTHHHHHHHHCCCCSCCEEC-CCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS
T ss_pred CCCc-hhHHHHHhhcceEEEccCcccC-cCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc
Confidence 9877 4433333333332222222111 122222222 345556666777655 578999999999999999999764
Q ss_pred CCcceEEEEccCccChHHHHHHHHHHhcCCceEEEe----cccccccCCCCCC-CEEEEecCC-----------------
Q 011620 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEGV-NNVVNYDKP----------------- 413 (481)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~----t~~l~~Gidi~~~-~~vI~~~~p----------------- 413 (481)
+.+..+||++ ..+++.|++|+.+|||| |+++++|+|+|++ ++||+++.|
T Consensus 299 ----~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~ 369 (1054)
T 1gku_B 299 ----FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMV 369 (1054)
T ss_dssp ----SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHH
T ss_pred ----cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHH
Confidence 6788999987 37789999999999999 8999999999995 999999999
Q ss_pred ------------------------------------------------------CChhhHHHHHhhhhcCCCCC--cEEE
Q 011620 414 ------------------------------------------------------AYIKTYIHRAGRTARAGQLG--RCFT 437 (481)
Q Consensus 414 ------------------------------------------------------~s~~~~~Q~~GR~~R~~~~g--~~i~ 437 (481)
.+...|+||+||+||.|..| .+++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~ 449 (1054)
T 1gku_B 370 KLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGAS 449 (1054)
T ss_dssp HHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEE
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEE
Confidence 78999999999999976664 5888
Q ss_pred EEeCCcchhhhhhcccccc
Q 011620 438 LLHKDEVCLVGCLTPLLLC 456 (481)
Q Consensus 438 ~~~~~~~~~~~~i~~~~~~ 456 (481)
|+...+...+..+.+.+..
T Consensus 450 ~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 450 FLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEECSCHHHHHHHHHHHHT
T ss_pred EEEecCHHHHHHHHHHHhh
Confidence 8988888888888777664
No 31
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.8e-39 Score=343.93 Aligned_cols=339 Identities=19% Similarity=0.192 Sum_probs=201.8
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc-cCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.|+.+||++|.++++.+++ ++++++.+|||+|||++++++++..+.... ..+.++||++|+++|+.|+++.+.++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp ----CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4678999999999999987 899999999999999999999988776542 11567999999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEe
Q 011620 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (481)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViD 204 (481)
+...++++..++|+........ .+..+++|+|+||+++.+.+.......+.++++||+|
T Consensus 320 ~~~~~~~v~~~~G~~~~~~~~~---------------------~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViD 378 (936)
T 4a2w_A 320 FERQGYSVQGISGENFSNVSVE---------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 378 (936)
T ss_dssp HHTTTCCEEEECCC-----CCH---------------------HHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEE
T ss_pred hcccCceEEEEECCcchhhHHH---------------------HhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEE
Confidence 8877899999999875433211 1223469999999999999887443367889999999
Q ss_pred cchhhhhHhHH-hHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcc-c
Q 011620 205 ETDRLLREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN-K 282 (481)
Q Consensus 205 E~H~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~-~ 282 (481)
|||++...... ..+..+....... ..+..+++++|||+..... .
T Consensus 379 EaH~~~~~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~l~LSATp~~~~~~~ 424 (936)
T 4a2w_A 379 ECHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNAKN 424 (936)
T ss_dssp TGGGCSTTCHHHHHHHHHHHHHHTT----------------------------------CSCCCEEEEEESCCCCTTCCS
T ss_pred CccccCCCccHHHHHHHHHHHhhcc----------------------------------CCCcCeEEEecCCcccccchh
Confidence 99998765432 2222222211100 0123478999999852110 0
Q ss_pred ----------cc------------------ccccCCceeeecCCc--cc-c---------------------------CC
Q 011620 283 ----------LA------------------QLDLHHPLFLTTGET--RY-K---------------------------LP 304 (481)
Q Consensus 283 ----------~~------------------~~~~~~~~~~~~~~~--~~-~---------------------------~~ 304 (481)
+. ..+...+........ .. . .+
T Consensus 425 l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~ 504 (936)
T 4a2w_A 425 IEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNS 504 (936)
T ss_dssp HHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 00 000011110000000 00 0 00
Q ss_pred cc---c---ccce-------------------------------------------------------------------
Q 011620 305 ER---L---ESYK------------------------------------------------------------------- 311 (481)
Q Consensus 305 ~~---~---~~~~------------------------------------------------------------------- 311 (481)
.. . ..+.
T Consensus 505 ~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 584 (936)
T 4a2w_A 505 KKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYT 584 (936)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCC
Confidence 00 0 0000
Q ss_pred ----------------------ecccCCCcHHHHHHHHHh----cCCCcEEEEcCCchhHHHHHHHHhhcCC--------
Q 011620 312 ----------------------LICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE-------- 357 (481)
Q Consensus 312 ----------------------~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~l~~~~~-------- 357 (481)
.......|...+..++.. ..+.++||||+++.+++.+++.|.+...
T Consensus 585 ~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~ 664 (936)
T 4a2w_A 585 ELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGV 664 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeE
Confidence 000023355556666654 3467999999999999999999987511
Q ss_pred -cceEEEEccCccChHHHHHHHHHHhc-CCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcE
Q 011620 358 -LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435 (481)
Q Consensus 358 -~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~ 435 (481)
.+.....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||+||+|+|+..|+||+|| ||. +.|.+
T Consensus 665 l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~v 742 (936)
T 4a2w_A 665 LMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKC 742 (936)
T ss_dssp C----------------------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCE
T ss_pred EecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEE
Confidence 02345556889999999999999999 999999999999999999999999999999999999999999 998 78999
Q ss_pred EEEEeCCcch
Q 011620 436 FTLLHKDEVC 445 (481)
Q Consensus 436 i~~~~~~~~~ 445 (481)
+.++..++.+
T Consensus 743 i~Li~~~t~e 752 (936)
T 4a2w_A 743 ILVTSKTEVV 752 (936)
T ss_dssp EEEESCHHHH
T ss_pred EEEEeCCCHH
Confidence 9998876553
No 32
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.8e-39 Score=330.36 Aligned_cols=331 Identities=17% Similarity=0.209 Sum_probs=236.5
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCC--CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~--~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~ 112 (481)
-.+.+.+.++.++| +|+++|.++++.+.+....+ .+.++.+|||||||++|+++++..+.. +.+++|++||++
T Consensus 354 ~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~----g~qvlvlaPtr~ 428 (780)
T 1gm5_A 354 EGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----GFQTAFMVPTSI 428 (780)
T ss_dssp CTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH----TSCEEEECSCHH
T ss_pred chHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHH
Confidence 34667777788999 99999999999988643223 589999999999999999999988754 357999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhcc-CCcEEEeCChhHHHhhhcCC
Q 011620 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATR 191 (481)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~v~T~~~l~~~l~~~~ 191 (481)
|+.|+++.+.++....++++..++|+........ .+..+.. .++|+|+||+.+..
T Consensus 429 La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~------------------~~~~l~~g~~~IvVgT~~ll~~------ 484 (780)
T 1gm5_A 429 LAIQHYRRTVESFSKFNIHVALLIGATTPSEKEK------------------IKSGLRNGQIDVVIGTHALIQE------ 484 (780)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHH------------------HHHHHHSSCCCEEEECTTHHHH------
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHH------------------HHHHHhcCCCCEEEECHHHHhh------
Confidence 9999999999998888999999999887654422 2222333 48999999987754
Q ss_pred CcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEE
Q 011620 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (481)
Q Consensus 192 ~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (481)
.+.+.++++||+||+|++...... .+.. .....++++
T Consensus 485 ~~~~~~l~lVVIDEaHr~g~~qr~--------~l~~-----------------------------------~~~~~~vL~ 521 (780)
T 1gm5_A 485 DVHFKNLGLVIIDEQHRFGVKQRE--------ALMN-----------------------------------KGKMVDTLV 521 (780)
T ss_dssp CCCCSCCCEEEEESCCCC-----C--------CCCS-----------------------------------SSSCCCEEE
T ss_pred hhhccCCceEEecccchhhHHHHH--------HHHH-----------------------------------hCCCCCEEE
Confidence 244778999999999986222100 0000 002347999
Q ss_pred EeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHh--cCCCcEEEEcCCch------
Q 011620 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE------ 343 (481)
Q Consensus 272 ~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~------ 343 (481)
+|||+.+...........+...+..... ....+ ........+...+...+.. ..+.+++|||++++
T Consensus 522 mSATp~p~tl~~~~~g~~~~s~i~~~p~---~r~~i---~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~ 595 (780)
T 1gm5_A 522 MSATPIPRSMALAFYGDLDVTVIDEMPP---GRKEV---QTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLN 595 (780)
T ss_dssp EESSCCCHHHHHHHTCCSSCEEECCCCS---SCCCC---EECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC-------
T ss_pred EeCCCCHHHHHHHHhCCcceeeeeccCC---CCcce---EEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhh
Confidence 9999865433322211111111111000 00111 1111122333444444442 24668999999764
Q ss_pred --hHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCC-ChhhHH
Q 011620 344 --STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYI 420 (481)
Q Consensus 344 --~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~-s~~~~~ 420 (481)
.++.+++.|.+..-.+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|. +...+.
T Consensus 596 ~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~ 675 (780)
T 1gm5_A 596 VKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLH 675 (780)
T ss_dssp -CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHH
Confidence 46777777766111237889999999999999999999999999999999999999999999999999985 688899
Q ss_pred HHHhhhhcCCCCCcEEEEEeCCc
Q 011620 421 HRAGRTARAGQLGRCFTLLHKDE 443 (481)
Q Consensus 421 Q~~GR~~R~~~~g~~i~~~~~~~ 443 (481)
||+||+||.|..|.|++++++.+
T Consensus 676 Qr~GRaGR~g~~g~~ill~~~~~ 698 (780)
T 1gm5_A 676 QLRGRVGRGGQEAYCFLVVGDVG 698 (780)
T ss_dssp HHHHTSCCSSTTCEEECCCCSCC
T ss_pred HHhcccCcCCCCCEEEEEECCCC
Confidence 99999999999999999998433
No 33
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5.9e-39 Score=321.74 Aligned_cols=310 Identities=18% Similarity=0.187 Sum_probs=222.7
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
+|+++|.+|++.++. ++++++++|||+|||++++.++...+..+ +.+++|++|+++|+.||.+.+.++....+
T Consensus 113 ~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC---SSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC---CCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 899999999999886 68999999999999999998887776542 33799999999999999999999866656
Q ss_pred ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhh
Q 011620 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~ 209 (481)
..+..+.++...... .....+|+|+||+.+... ....+.++++||+||||++
T Consensus 186 ~~v~~~~~~~~~~~~------------------------~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~ 237 (510)
T 2oca_A 186 AMIKKIGGGASKDDK------------------------YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLA 237 (510)
T ss_dssp GGEEECGGGCCTTGG------------------------GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGC
T ss_pred cceEEEecCCccccc------------------------cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCC
Confidence 788888887553322 224579999999976443 2245678999999999998
Q ss_pred hhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccc-ccc
Q 011620 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LDL 288 (481)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~-~~~ 288 (481)
.... ...++..+. ...+++++|||+......... ..+
T Consensus 238 ~~~~----~~~il~~~~--------------------------------------~~~~~l~lSATp~~~~~~~~~~~~~ 275 (510)
T 2oca_A 238 TGKS----ISSIISGLN--------------------------------------NCMFKFGLSGSLRDGKANIMQYVGM 275 (510)
T ss_dssp CHHH----HHHHGGGCT--------------------------------------TCCEEEEEESCGGGCSSCHHHHHHH
T ss_pred Cccc----HHHHHHhcc--------------------------------------cCcEEEEEEeCCCCCcccHHHhHHh
Confidence 6633 222322221 123789999999655332111 111
Q ss_pred CCceeeecCCcc-----ccCCc--------------------cccc-ceecccCCCcHHHHHHHHHhc---CCCcEEEEc
Q 011620 289 HHPLFLTTGETR-----YKLPE--------------------RLES-YKLICESKLKPLYLVALLQSL---GEEKCIVFT 339 (481)
Q Consensus 289 ~~~~~~~~~~~~-----~~~~~--------------------~~~~-~~~~~~~~~k~~~l~~~l~~~---~~~~~lVf~ 339 (481)
..+......... ...+. .+.. +........+...+...+... .+.+++||+
T Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~ 355 (510)
T 2oca_A 276 FGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFK 355 (510)
T ss_dssp HCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred hCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 122221111100 00000 0000 011111222333444444433 344566666
Q ss_pred CCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEec-ccccccCCCCCCCEEEEecCCCChhh
Q 011620 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIKT 418 (481)
Q Consensus 340 ~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t-~~l~~Gidi~~~~~vI~~~~p~s~~~ 418 (481)
+ ..+++.+++.|.+.+ ..+..+||+++..+|.++++.|++|+.+||||| +++++|+|+|++++||+++.|++...
T Consensus 356 ~-~~~~~~l~~~L~~~~---~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~ 431 (510)
T 2oca_A 356 H-VSHGKAIFDLIKNEY---DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKII 431 (510)
T ss_dssp S-HHHHHHHHHHHHTTC---SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCH
T ss_pred c-HHHHHHHHHHHHHcC---CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHH
Confidence 6 899999999999876 488999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCcEEEEEe
Q 011620 419 YIHRAGRTARAGQLGRCFTLLH 440 (481)
Q Consensus 419 ~~Q~~GR~~R~~~~g~~i~~~~ 440 (481)
|.|++||+||.|..+.++++++
T Consensus 432 ~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 432 VLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHhcccccCCCCceEEEEE
Confidence 9999999999988775555555
No 34
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2e-38 Score=349.30 Aligned_cols=354 Identities=19% Similarity=0.159 Sum_probs=251.9
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
|.+...+.+...+|..|+|.|.++++.+++ .+++++|+||||||||+++.++++..+... ++.+++|++|+++|+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~---~~~nvlv~APTGSGKTliaelail~~l~~~--~~~kavyi~P~raLa 985 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYN---SDDNVFVGAPTGSGKTICAEFAILRMLLQS--SEGRCVYITPMEALA 985 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHS---CCSCEEEECCTTSCCHHHHHHHHHHHHHHC--TTCCEEEECSCHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCCcEEEEeCCCCCchHHHHHHHHHHHHhC--CCCEEEEEcChHHHH
Confidence 445566777777899999999999999886 357899999999999999999999988764 345799999999999
Q ss_pred HHHHHHHHH-hccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCC-
Q 011620 115 LQVKDVFAA-IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG- 192 (481)
Q Consensus 115 ~q~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~- 192 (481)
.|.++++.+ +....|++|..++|+...... ...+++|+||||+++..++.+...
T Consensus 986 ~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~------------------------~~~~~~IiV~TPEkld~llr~~~~~ 1041 (1724)
T 4f92_B 986 EQVYMDWYEKFQDRLNKKVVLLTGETSTDLK------------------------LLGKGNIIISTPEKWDILSRRWKQR 1041 (1724)
T ss_dssp HHHHHHHHHHHTTTSCCCEEECCSCHHHHHH------------------------HHHHCSEEEECHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHhchhcCCEEEEEECCCCcchh------------------------hcCCCCEEEECHHHHHHHHhCcccc
Confidence 999998865 666679999999987653322 113469999999999877765433
Q ss_pred cccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEE
Q 011620 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (481)
Q Consensus 193 ~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (481)
..+.++++||+||+|.+.+ ..+..++.++..+...... .-...+++++
T Consensus 1042 ~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~-------------------------------~~~~~riI~l 1089 (1724)
T 4f92_B 1042 KNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQ-------------------------------IERPIRIVAL 1089 (1724)
T ss_dssp HHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHT-------------------------------TSSCCEEEEE
T ss_pred cccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhh-------------------------------cCCCceEEEE
Confidence 2377899999999998765 4566666666554321100 0023489999
Q ss_pred eEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCC-------cHHHHHHHH-HhcCCCcEEEEcCCchh
Q 011620 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-------KPLYLVALL-QSLGEEKCIVFTSSVES 344 (481)
Q Consensus 273 Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------k~~~l~~~l-~~~~~~~~lVf~~s~~~ 344 (481)
|||+++..+...+................ +..++.......... ....+...+ ....++++||||+++..
T Consensus 1090 SATl~N~~dla~WL~~~~~~~~~~~~~~R--PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~ 1167 (1724)
T 4f92_B 1090 SSSLSNAKDVAHWLGCSATSTFNFHPNVR--PVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQ 1167 (1724)
T ss_dssp ESCBTTHHHHHHHHTCCSTTEEECCGGGC--SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHH
T ss_pred eCCCCCHHHHHHHhCCCCCCeEEeCCCCC--CCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHH
Confidence 99996443333333333222222221111 111111111111111 111122223 33457799999999999
Q ss_pred HHHHHHHHhhcCC-------------------------------cceEEEEccCccChHHHHHHHHHHhcCCceEEEecc
Q 011620 345 THRLCTLLNHFGE-------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (481)
Q Consensus 345 ~~~l~~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~ 393 (481)
++.++..|..... ....+..+|++++..+|..+.+.|++|..+|||||+
T Consensus 1168 ~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~ 1247 (1724)
T 4f92_B 1168 TRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASR 1247 (1724)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEG
T ss_pred HHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEECh
Confidence 9988877643210 013588999999999999999999999999999999
Q ss_pred cccccCCCCCCCEEEE----e------cCCCChhhHHHHHhhhhcCCC--CCcEEEEEeCCcchhhhhhc
Q 011620 394 AMTRGMDVEGVNNVVN----Y------DKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVCLVGCLT 451 (481)
Q Consensus 394 ~l~~Gidi~~~~~vI~----~------~~p~s~~~~~Q~~GR~~R~~~--~g~~i~~~~~~~~~~~~~i~ 451 (481)
+++.|+|+|...+||. | ..|.+..+|.||+||+||.|. .|.+++++...+...+..+.
T Consensus 1248 tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1248 SLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp GGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHT
T ss_pred HHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHh
Confidence 9999999998887773 2 235789999999999999886 68899999988777766553
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=7.6e-39 Score=333.35 Aligned_cols=340 Identities=18% Similarity=0.225 Sum_probs=217.9
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc--CCccEEEEcccHHHHHHH-HHHHHHhcc
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQV-KDVFAAIAP 126 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~~lil~P~~~L~~q~-~~~~~~~~~ 126 (481)
+|+++|.++++.+++ ++++++.+|||+|||++|+++++..+..+.. .+.++||++|+++|+.|| .+.+.+++.
T Consensus 7 ~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 7 QLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 899999999999987 8899999999999999999999988776532 235799999999999999 999999876
Q ss_pred ccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhc-----CCCcccCCccEE
Q 011620 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-----TRGFTLEHLCYL 201 (481)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~-----~~~~~~~~~~~i 201 (481)
. ++.+..++|+....... ..+..+++|+|+||++|...+.. ...+.+.++++|
T Consensus 83 ~-~~~v~~~~g~~~~~~~~---------------------~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lv 140 (699)
T 4gl2_A 83 K-WYRVIGLSGDTQLKISF---------------------PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLI 140 (699)
T ss_dssp T-TSCEEEEC----CCCCH---------------------HHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEE
T ss_pred c-CceEEEEeCCcchhhHH---------------------HhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEE
Confidence 5 58888888876533221 11235579999999999988742 234567889999
Q ss_pred EEecchhhhhHhHHhH-HHHHHHhc-ccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecC
Q 011620 202 VVDETDRLLREAYQAW-LPTVLQLT-RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (481)
Q Consensus 202 ViDE~H~~~~~~~~~~-~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~ 279 (481)
||||||++........ +..++... .... .........+..+++++|||+...
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~~~~--------------------------~~~~~~~~~~~~~il~lTATp~~~ 194 (699)
T 4gl2_A 141 IIDECHHTNKEAVYNNIMRHYLMQKLKNNR--------------------------LKKENKPVIPLPQILGLTASPGVG 194 (699)
T ss_dssp EEESGGGCBTTBSSCSHHHHHHHHHHHHHH--------------------------HHC----CCCCCEEEEECSCCCCC
T ss_pred EEECccccCccchHHHHHHHHHHhhhcccc--------------------------cccccccCCCCCEEEEeccccccc
Confidence 9999998754332222 22111110 0000 000000111234889999999763
Q ss_pred cc--------ccc---cc------------------ccCCceeee--cCCccccC-----------------Ccccccce
Q 011620 280 PN--------KLA---QL------------------DLHHPLFLT--TGETRYKL-----------------PERLESYK 311 (481)
Q Consensus 280 ~~--------~~~---~~------------------~~~~~~~~~--~~~~~~~~-----------------~~~~~~~~ 311 (481)
.. .+. .. ....+.... ........ ......+.
T Consensus 195 ~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g 274 (699)
T 4gl2_A 195 GATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFG 274 (699)
T ss_dssp SCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSS
T ss_pred ccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhcc
Confidence 11 000 00 000110000 00000000 00000000
Q ss_pred --------------------------------------------------------------------------------
Q 011620 312 -------------------------------------------------------------------------------- 311 (481)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (481)
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (699)
T 4gl2_A 275 TQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDET 354 (699)
T ss_dssp SHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchh
Confidence
Q ss_pred -------------------ec-ccCCCcHHHHHHHHH----hcC-CCcEEEEcCCchhHHHHHHHHhhcC---CcceEEE
Q 011620 312 -------------------LI-CESKLKPLYLVALLQ----SLG-EEKCIVFTSSVESTHRLCTLLNHFG---ELRIKIK 363 (481)
Q Consensus 312 -------------------~~-~~~~~k~~~l~~~l~----~~~-~~~~lVf~~s~~~~~~l~~~l~~~~---~~~~~~~ 363 (481)
.. .....|...+..++. ... ++++||||+++..++.+++.|.+.. ..++.+.
T Consensus 355 ~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~ 434 (699)
T 4gl2_A 355 DRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAH 434 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CE
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceE
Confidence 00 001122222333333 223 7899999999999999999998751 1138899
Q ss_pred EccCc--------cChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcE
Q 011620 364 EYSGL--------QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435 (481)
Q Consensus 364 ~~~~~--------~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~ 435 (481)
.+||+ ++..+|.++++.|++|+.+|||||+++++|+|+|++++||+|++|+|+..|+||+||++|.| +.+
T Consensus 435 ~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~ 512 (699)
T 4gl2_A 435 HLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STY 512 (699)
T ss_dssp ECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEE
T ss_pred EEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceE
Confidence 99999 99999999999999999999999999999999999999999999999999999999976543 344
Q ss_pred EEEEeCCc
Q 011620 436 FTLLHKDE 443 (481)
Q Consensus 436 i~~~~~~~ 443 (481)
+++....+
T Consensus 513 ~l~~~~~~ 520 (699)
T 4gl2_A 513 VLVAHSGS 520 (699)
T ss_dssp EEEEESSS
T ss_pred EEEEeCCc
Confidence 44444443
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.4e-37 Score=333.63 Aligned_cols=330 Identities=17% Similarity=0.187 Sum_probs=240.7
Q ss_pred CCHHHHHHH-HHcCCCCCchhhHHHHHhhhCCCCCCC--CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccH
Q 011620 35 LDPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (481)
Q Consensus 35 l~~~~~~~l-~~~~~~~~~~~Q~~a~~~~~~~~~~~~--~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~ 111 (481)
.++...+.+ ..++| +++|+|.+|++.++.....++ ++++++|||+|||.+++.++...+.. +.+++|++||+
T Consensus 588 ~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~----g~~vlvlvPt~ 662 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN----HKQVAVLVPTT 662 (1151)
T ss_dssp CCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT----TCEEEEECSSH
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh----CCeEEEEechH
Confidence 444444444 45788 579999999999886443354 89999999999999999888766543 44899999999
Q ss_pred HHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhcc-CCcEEEeCChhHHHhhhcC
Q 011620 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINAT 190 (481)
Q Consensus 112 ~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~I~v~T~~~l~~~l~~~ 190 (481)
.|+.|+++.+.+.....++++..+.+......... .+..+.. .++|+|+||+.+..
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~------------------~~~~l~~g~~dIvV~T~~ll~~----- 719 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQ------------------ILAEVAEGKIDILIGTHKLLQS----- 719 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHH------------------HHHHHHTTCCSEEEECTHHHHS-----
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHH------------------HHHHHhcCCCCEEEECHHHHhC-----
Confidence 99999999999888777888888887655443311 1222333 48999999986632
Q ss_pred CCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeE
Q 011620 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (481)
Q Consensus 191 ~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (481)
.+.+.++++||+||+|++.... ...+.... ...+++
T Consensus 720 -~~~~~~l~lvIiDEaH~~g~~~-----~~~l~~l~--------------------------------------~~~~vl 755 (1151)
T 2eyq_A 720 -DVKFKDLGLLIVDEEHRFGVRH-----KERIKAMR--------------------------------------ANVDIL 755 (1151)
T ss_dssp -CCCCSSEEEEEEESGGGSCHHH-----HHHHHHHH--------------------------------------TTSEEE
T ss_pred -CccccccceEEEechHhcChHH-----HHHHHHhc--------------------------------------CCCCEE
Confidence 2457789999999999964322 12222221 123789
Q ss_pred EEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhc-CCCcEEEEcCCchhHHHHH
Q 011620 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLC 349 (481)
Q Consensus 271 ~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~ 349 (481)
++|||+.+.........+.+...+...... ...+..+... ..+......+++.. .+++++|||++++.++.++
T Consensus 756 ~lSATp~p~~l~~~~~~~~~~~~i~~~~~~---r~~i~~~~~~---~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~ 829 (1151)
T 2eyq_A 756 TLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVRE---YDSMVVREAILREILRGGQVYYLYNDVENIQKAA 829 (1151)
T ss_dssp EEESSCCCHHHHHHHTTTSEEEECCCCCCB---CBCEEEEEEE---CCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHH
T ss_pred EEcCCCChhhHHHHHhcCCCceEEecCCCC---ccccEEEEec---CCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHH
Confidence 999998766555444444433332221111 0111111111 12222233333322 5679999999999999999
Q ss_pred HHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecC-CCChhhHHHHHhhhhc
Q 011620 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK-PAYIKTYIHRAGRTAR 428 (481)
Q Consensus 350 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~-p~s~~~~~Q~~GR~~R 428 (481)
+.|++.. .+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++. +++...|.||+||+||
T Consensus 830 ~~L~~~~-p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR 908 (1151)
T 2eyq_A 830 ERLAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 908 (1151)
T ss_dssp HHHHHHC-TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCB
T ss_pred HHHHHhC-CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCc
Confidence 9998762 1368999999999999999999999999999999999999999999999999987 5688999999999999
Q ss_pred CCCCCcEEEEEeCCc
Q 011620 429 AGQLGRCFTLLHKDE 443 (481)
Q Consensus 429 ~~~~g~~i~~~~~~~ 443 (481)
.|+.|.|++++.+.+
T Consensus 909 ~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 909 SHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TTBCEEEEEEECCGG
T ss_pred CCCceEEEEEECCcc
Confidence 999999999987643
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.6e-38 Score=350.04 Aligned_cols=354 Identities=18% Similarity=0.228 Sum_probs=248.4
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc-------cCCccEEEE
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------VRCLRALVV 107 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~-------~~~~~~lil 107 (481)
|+++.+.+.+ ||.+|++.|.++++.+++ .+++++|+||||+|||++|.++++..+.... ..+.+++|+
T Consensus 66 Lp~~~~~~f~--g~~~ln~iQs~~~~~al~---~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyi 140 (1724)
T 4f92_B 66 LPKYAQAGFE--GFKTLNRIQSKLYRAALE---TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYI 140 (1724)
T ss_dssp SCGGGSTTCT--TCSBCCHHHHHTHHHHHT---CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEE
T ss_pred cCHHHHHhcC--CCCCCCHHHHHHHHHHHc---CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEE
Confidence 5555544332 788999999999998885 4689999999999999999999999987532 235689999
Q ss_pred cccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhh
Q 011620 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (481)
Q Consensus 108 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l 187 (481)
+|+++|+.|.++.+.+.....|+.|..++|+....+. ...+++|+|||||++..++
T Consensus 141 aP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~------------------------~~~~~~IlVtTpEkld~ll 196 (1724)
T 4f92_B 141 APMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE------------------------EISATQIIVCTPEKWDIIT 196 (1724)
T ss_dssp CSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT------------------------TGGGCSEEEECHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc------------------------ccCCCCEEEECHHHHHHHH
Confidence 9999999999999998888889999999998653321 1135799999999987666
Q ss_pred hcCCC-cccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcc
Q 011620 188 NATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (481)
Q Consensus 188 ~~~~~-~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (481)
.+... -.+.++++||+||+|.+.+ ..+..++.++..+...... . -..
T Consensus 197 r~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~------------------~-------------~~~ 244 (1724)
T 4f92_B 197 RKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEM------------------T-------------QED 244 (1724)
T ss_dssp TSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHH------------------H-------------TCC
T ss_pred cCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHh------------------C-------------CCC
Confidence 55322 2367899999999997755 5666776666543210000 0 023
Q ss_pred eeeEEEeEEEecCcccccccccCCc-e-eeecCCccccCCcccccceecccCCCcH-------HHHHHHHH-hcCCCcEE
Q 011620 267 LVKMVLSATLTQDPNKLAQLDLHHP-L-FLTTGETRYKLPERLESYKLICESKLKP-------LYLVALLQ-SLGEEKCI 336 (481)
Q Consensus 267 ~~~i~~Sat~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~-------~~l~~~l~-~~~~~~~l 336 (481)
.++|++|||+++ ...++......+ . ....... + .+..+............. ..+...+. ...++++|
T Consensus 245 ~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~-~-RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~L 321 (1724)
T 4f92_B 245 VRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNS-F-RPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL 321 (1724)
T ss_dssp CEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGG-G-CSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEE
T ss_pred CcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCC-C-ccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEE
Confidence 489999999863 333322211111 0 0011111 0 111222222212111111 11222222 22456899
Q ss_pred EEcCCchhHHHHHHHHhhcC----C------------------------------cceEEEEccCccChHHHHHHHHHHh
Q 011620 337 VFTSSVESTHRLCTLLNHFG----E------------------------------LRIKIKEYSGLQRQSVRSKTLKAFR 382 (481)
Q Consensus 337 Vf~~s~~~~~~l~~~l~~~~----~------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~ 382 (481)
|||+|+..++.+++.|.+.. . ....+.++|++++..+|..+.+.|+
T Consensus 322 VF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~ 401 (1724)
T 4f92_B 322 VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFA 401 (1724)
T ss_dssp EECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHH
Confidence 99999999999988876421 0 0124788999999999999999999
Q ss_pred cCCceEEEecccccccCCCCCCCEEEE----ec------CCCChhhHHHHHhhhhcCCC--CCcEEEEEeCCcchhhhhh
Q 011620 383 EGKIQVLVSSDAMTRGMDVEGVNNVVN----YD------KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVCLVGCL 450 (481)
Q Consensus 383 ~g~~~vLi~t~~l~~Gidi~~~~~vI~----~~------~p~s~~~~~Q~~GR~~R~~~--~g~~i~~~~~~~~~~~~~i 450 (481)
+|..+|||||++++.|||+|..++||. |+ .|.+..+|.||+|||||.|. .|.+++++...+...+..+
T Consensus 402 ~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 402 DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHH
Confidence 999999999999999999998888874 33 35689999999999999764 6889999998887766655
Q ss_pred cc
Q 011620 451 TP 452 (481)
Q Consensus 451 ~~ 452 (481)
..
T Consensus 482 l~ 483 (1724)
T 4f92_B 482 LN 483 (1724)
T ss_dssp TT
T ss_pred Hc
Confidence 43
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=5.2e-38 Score=332.21 Aligned_cols=316 Identities=16% Similarity=0.166 Sum_probs=230.0
Q ss_pred HcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.++| +|+++|.++++.+.+ ++++++.+|||+|||++|++++...+. .+.+++|++|+++|+.|+++.+..+
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~----~g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHR----NMTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHH----TTCEEEEEESCGGGHHHHHHHHHTT
T ss_pred hCCC-CCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3566 699999999999887 899999999999999999988876553 3457999999999999999999987
Q ss_pred ccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEe
Q 011620 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (481)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViD 204 (481)
.. ++++..++|+.... ..++|+|+||++|.+.+... ...+.++++||||
T Consensus 106 ~~--~~~v~~l~G~~~~~----------------------------~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~lvViD 154 (997)
T 4a4z_A 106 FD--DVNIGLITGDVQIN----------------------------PDANCLIMTTEILRSMLYRG-ADLIRDVEFVIFD 154 (997)
T ss_dssp C----CCEEEECSSCEEC----------------------------TTSSEEEEEHHHHHHHHHHT-CSGGGGEEEEEEC
T ss_pred cC--CCeEEEEeCCCccC----------------------------CCCCEEEECHHHHHHHHHhC-chhhcCCCEEEEE
Confidence 54 67888888876422 34699999999999888763 3457889999999
Q ss_pred cchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccccc
Q 011620 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284 (481)
Q Consensus 205 E~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~ 284 (481)
|||.+.+.+++..++.++..++ +..+++++|||+++......
T Consensus 155 EaH~l~d~~~g~~~e~ii~~l~--------------------------------------~~v~iIlLSAT~~n~~ef~~ 196 (997)
T 4a4z_A 155 EVHYVNDQDRGVVWEEVIIMLP--------------------------------------QHVKFILLSATVPNTYEFAN 196 (997)
T ss_dssp CTTCCCTTCTTCCHHHHHHHSC--------------------------------------TTCEEEEEECCCTTHHHHHH
T ss_pred CcccccccchHHHHHHHHHhcc--------------------------------------cCCCEEEEcCCCCChHHHHH
Confidence 9999988888777777776653 23488999999863322111
Q ss_pred ccc--cCCcee-eecCCccccCC---------------------------------------------------------
Q 011620 285 QLD--LHHPLF-LTTGETRYKLP--------------------------------------------------------- 304 (481)
Q Consensus 285 ~~~--~~~~~~-~~~~~~~~~~~--------------------------------------------------------- 304 (481)
+.. ...... +........+.
T Consensus 197 ~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (997)
T 4a4z_A 197 WIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRG 276 (997)
T ss_dssp HHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------------
T ss_pred HHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccc
Confidence 110 000000 00000000000
Q ss_pred --------------------------------cccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHH
Q 011620 305 --------------------------------ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (481)
Q Consensus 305 --------------------------------~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l 352 (481)
.....+........+...+...+......++||||+++..++.++..|
T Consensus 277 ~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L 356 (997)
T 4a4z_A 277 GSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWL 356 (997)
T ss_dssp ----------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHH
Confidence 000000111122334556677777777789999999999999999998
Q ss_pred hhcCCc------------------------------------ceEEEEccCccChHHHHHHHHHHhcCCceEEEeccccc
Q 011620 353 NHFGEL------------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (481)
Q Consensus 353 ~~~~~~------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~ 396 (481)
.+.+-. ...+..+|+++++.+|..+++.|++|..+|||||++++
T Consensus 357 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a 436 (997)
T 4a4z_A 357 EGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFA 436 (997)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhh
Confidence 664310 11478899999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEecCCC---------ChhhHHHHHhhhhcCCC--CCcEEEEE
Q 011620 397 RGMDVEGVNNVVNYDKPA---------YIKTYIHRAGRTARAGQ--LGRCFTLL 439 (481)
Q Consensus 397 ~Gidi~~~~~vI~~~~p~---------s~~~~~Q~~GR~~R~~~--~g~~i~~~ 439 (481)
+|+|+|+ ..||+++.+. |...|+||+||+||.|. .|.|++++
T Consensus 437 ~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 437 MGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred CCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 9999999 5566655554 99999999999999884 45566666
No 39
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=9.2e-38 Score=310.01 Aligned_cols=289 Identities=25% Similarity=0.303 Sum_probs=212.9
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
+|+|+|.+|++.+++ ++++++++|||+|||++++.++... +.++||++|+++|+.||.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~~~~~~~~----~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----G 157 (472)
T ss_dssp CBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHHHHHGGGG----C
T ss_pred CcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHHHHHHHhC----C
Confidence 799999999998876 6789999999999999998877653 347999999999999999999885 7
Q ss_pred ce-EEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh
Q 011620 130 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 130 ~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~ 208 (481)
++ +..++|+.. ...+|+|+||+.+...+... ..++++||+||||+
T Consensus 158 ~~~v~~~~g~~~------------------------------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~ 203 (472)
T 2fwr_A 158 EEYVGEFSGRIK------------------------------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHH 203 (472)
T ss_dssp GGGEEEBSSSCB------------------------------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGG
T ss_pred CcceEEECCCcC------------------------------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcC
Confidence 77 888887653 23589999999998766531 23589999999999
Q ss_pred hhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCc--------
Q 011620 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-------- 280 (481)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~-------- 280 (481)
+.+..+.. +...+. ..+++++|||+....
T Consensus 204 ~~~~~~~~----~~~~~~---------------------------------------~~~~l~lSATp~~~~~~~~~l~~ 240 (472)
T 2fwr_A 204 LPAESYVQ----IAQMSI---------------------------------------APFRLGLTATFEREDGRHEILKE 240 (472)
T ss_dssp TTSTTTHH----HHHTCC---------------------------------------CSEEEEEESCCCCTTSGGGSHHH
T ss_pred CCChHHHH----HHHhcC---------------------------------------CCeEEEEecCccCCCCHHHHHHH
Confidence 87665543 222221 126788899986221
Q ss_pred -----------ccccccccCCceeeec--CC--ccc---------------------cCCcccccc--------------
Q 011620 281 -----------NKLAQLDLHHPLFLTT--GE--TRY---------------------KLPERLESY-------------- 310 (481)
Q Consensus 281 -----------~~~~~~~~~~~~~~~~--~~--~~~---------------------~~~~~~~~~-------------- 310 (481)
..+....+..+..... .. ... .....+..+
T Consensus 241 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (472)
T 2fwr_A 241 VVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEAL 320 (472)
T ss_dssp HTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTT
T ss_pred HhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHH
Confidence 1111111111111000 00 000 000000000
Q ss_pred -------eecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhc
Q 011620 311 -------KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (481)
Q Consensus 311 -------~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 383 (481)
........|...+..++....++++||||++...++.+++.|. +..+||+++..+|.++++.|++
T Consensus 321 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------~~~~~g~~~~~~R~~~~~~F~~ 392 (472)
T 2fwr_A 321 RAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------IPAITHRTSREEREEILEGFRT 392 (472)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------CCBCCSSSCSHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------cceeeCCCCHHHHHHHHHHHhC
Confidence 0112234566777888888778899999999999999998873 4468999999999999999999
Q ss_pred CCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCC-CcEEEE
Q 011620 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL-GRCFTL 438 (481)
Q Consensus 384 g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~-g~~i~~ 438 (481)
|+.+|||+|+++++|+|+|++++||+++.|+++..|.||+||++|.|+. +.++++
T Consensus 393 g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 393 GRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 9999999999999999999999999999999999999999999998854 444443
No 40
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.2e-37 Score=309.64 Aligned_cols=358 Identities=20% Similarity=0.211 Sum_probs=243.9
Q ss_pred HcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.+|| .|++.|..+++.+++ |+ +..++||+|||++|.+|++..... +..++|+|||++|+.|.++++..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~----G~--Iaea~TGeGKTlaf~LP~~l~aL~----g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHD----GN--IAEMKTGEGKTLTSTLPVYLNALT----GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHT----TS--EEECCTTSCHHHHHHHHHHHHHTT----SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhC----CC--EEEccCCcHHHHHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4799 999999999998886 66 999999999999999999843322 447999999999999999999999
Q ss_pred ccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-HHhhhcC-----CCcccCCc
Q 011620 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHL 198 (481)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~-----~~~~~~~~ 198 (481)
...+|+++.+++|+....... ...+++|+|+||+.| .+++... ..+.+..+
T Consensus 148 ~~~lgl~v~~i~gg~~~~~r~-----------------------~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~ 204 (844)
T 1tf5_A 148 FEFLGLTVGLNLNSMSKDEKR-----------------------EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPL 204 (844)
T ss_dssp HHHTTCCEEECCTTSCHHHHH-----------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC
T ss_pred HhhcCCeEEEEeCCCCHHHHH-----------------------HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCC
Confidence 999999999999987654321 123579999999999 4444321 23557889
Q ss_pred cEEEEecchhhh-hHh---------------HHhHHHHHHHhcccC---------cccc-----------------cccc
Q 011620 199 CYLVVDETDRLL-REA---------------YQAWLPTVLQLTRSD---------NENR-----------------FSDA 236 (481)
Q Consensus 199 ~~iViDE~H~~~-~~~---------------~~~~~~~i~~~~~~~---------~~~~-----------------~~~~ 236 (481)
.++|+||||.++ +.. +...+..++..++.. .... +.++
T Consensus 205 ~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsa 284 (844)
T 1tf5_A 205 HFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDV 284 (844)
T ss_dssp CEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSG
T ss_pred CEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCC
Confidence 999999999987 542 556677777766420 0000 0000
Q ss_pred ccc-ccccccc-chh---hhh--ccc-------------cc-------------------cCCCCC------------C-
Q 011620 237 STF-LPSAFGS-LKT---IRR--CGV-------------ER-------------------GFKDKP------------Y- 264 (481)
Q Consensus 237 ~~~-~~~~~~~-~~~---~~~--~~~-------------~~-------------------~~~~~~------------~- 264 (481)
... +...... +.. ... ..+ .+ .+.-.. +
T Consensus 285 t~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~f 364 (844)
T 1tf5_A 285 KHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYF 364 (844)
T ss_dssp GGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHH
Confidence 000 0000000 000 000 000 00 000000 0
Q ss_pred -cceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHh--cCCCcEEEEcCC
Q 011620 265 -PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSS 341 (481)
Q Consensus 265 -~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s 341 (481)
...++.++|+|.......+...+..+ ++...... +..... ...........|...+...+.. ..+.++||||+|
T Consensus 365 r~y~kl~GmTGTa~te~~e~~~iY~l~-vv~IPtn~-p~~r~d-~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s 441 (844)
T 1tf5_A 365 RMYEKLAGMTGTAKTEEEEFRNIYNMQ-VVTIPTNR-PVVRDD-RPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 441 (844)
T ss_dssp TTSSEEEEEESCCGGGHHHHHHHHCCC-EEECCCSS-CCCCEE-CCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HHHhhhccCCcccchhHHHHHHHhCCc-eEEecCCC-Cccccc-CCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 01134566777655444443333222 22221111 111111 1112334455677777776654 246789999999
Q ss_pred chhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCC--------CCCEEEEecCC
Q 011620 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE--------GVNNVVNYDKP 413 (481)
Q Consensus 342 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~--------~~~~vI~~~~p 413 (481)
++.++.++..|.+.+ +.+..+||++...++..+.+.|+.| .|+|||+++++|+|++ +..+||+++.|
T Consensus 442 ~~~se~Ls~~L~~~g---i~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p 516 (844)
T 1tf5_A 442 VETSELISKLLKNKG---IPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERH 516 (844)
T ss_dssp HHHHHHHHHHHHTTT---CCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCC
T ss_pred HHHHHHHHHHHHHCC---CCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCC
Confidence 999999999999887 8899999998887776665555554 7999999999999999 78899999999
Q ss_pred CChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 414 ~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
.|...|.||+||+||.|.+|.++.|++..|.
T Consensus 517 ~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 517 ESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp SSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred CCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 9999999999999999999999999998774
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.9e-37 Score=310.11 Aligned_cols=313 Identities=14% Similarity=0.110 Sum_probs=222.2
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
+++.+.+++... ...+.|.|+.+++.+. .++++++.+|||||||++|+++++..+.. .+.+++|++||++|+
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq~~~i~~l~----~g~dvlv~a~TGSGKT~~~~lpil~~l~~---~~~~vLvl~PtreLa 228 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDYEVDEDIFR----KKRLTIMDLHPGAGKTKRILPSIVREALK---RRLRTLILAPTRVVA 228 (618)
T ss_dssp -----CEECBCC-CCCCCCCCCCCGGGGS----TTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHH
T ss_pred chHHHHHHHhhc-cccCCCccccCHHHHh----cCCeEEEEcCCCCCHHHHHHHHHHHHHHh---CCCeEEEEcChHHHH
Confidence 455544444432 3678888877655554 48999999999999999999999988765 346899999999999
Q ss_pred HHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcc
Q 011620 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~ 194 (481)
.|+++.+. +..+.. .+... . . ....+..+.++|.+.+...+... ..
T Consensus 229 ~Qi~~~l~------~~~v~~-~~~~l-~-------~-----------------~~tp~~~i~~~t~~~l~~~l~~~--~~ 274 (618)
T 2whx_A 229 AEMEEALR------GLPIRY-QTPAV-K-------S-----------------DHTGREIVDLMCHATFTTRLLSS--TR 274 (618)
T ss_dssp HHHHHHTT------TSCEEE-CCTTS-S-------C-----------------CCCSSSCEEEEEHHHHHHHHHHC--SS
T ss_pred HHHHHHhc------CCceeE-ecccc-e-------e-----------------ccCCCceEEEEChHHHHHHHhcc--cc
Confidence 99998876 233331 11110 0 0 00122356778888887766553 34
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeE
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (481)
+.++++||+||||.+ +..+...+..+...... +..+++++||
T Consensus 275 l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~-------------------------------------~~~q~il~SA 316 (618)
T 2whx_A 275 VPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM-------------------------------------GEAAAIFMTA 316 (618)
T ss_dssp CCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH-------------------------------------TSCEEEEECS
T ss_pred ccCCeEEEEECCCCC-CccHHHHHHHHHHHhcc-------------------------------------cCccEEEEEC
Confidence 778999999999997 66666666666665421 1238999999
Q ss_pred EEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhh
Q 011620 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (481)
Q Consensus 275 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~ 354 (481)
|++.....+.. ..+..+...... + .. +...+...+.. ..+++||||++++.++.+++.|.+
T Consensus 317 T~~~~~~~~~~---~~~~~~~v~~~~---~-----------~~-~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~ 377 (618)
T 2whx_A 317 TPPGSTDPFPQ---SNSPIEDIEREI---P-----------ER-SWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRK 377 (618)
T ss_dssp SCTTCCCSSCC---CSSCEEEEECCC---C-----------SS-CCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHH
T ss_pred CCchhhhhhhc---cCCceeeecccC---C-----------HH-HHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHH
Confidence 99766554433 122211111110 0 00 00111222222 367999999999999999999998
Q ss_pred cCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEE--------------------EEecCCC
Q 011620 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV--------------------VNYDKPA 414 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~v--------------------I~~~~p~ 414 (481)
.+ ..+..+|+. +|.++++.|++|+.+|||||+++++|+|+| +++| |+++.|.
T Consensus 378 ~g---~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~ 449 (618)
T 2whx_A 378 SG---KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPV 449 (618)
T ss_dssp TT---CCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEEC
T ss_pred cC---CcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccC
Confidence 76 788889974 688899999999999999999999999997 8888 7777799
Q ss_pred ChhhHHHHHhhhhcCCC-CCcEEEEEe---CCcchhhhhhcccc
Q 011620 415 YIKTYIHRAGRTARAGQ-LGRCFTLLH---KDEVCLVGCLTPLL 454 (481)
Q Consensus 415 s~~~~~Q~~GR~~R~~~-~g~~i~~~~---~~~~~~~~~i~~~~ 454 (481)
+..+|+||+||+||.|. .|.+++|+. +.+...+..+++.+
T Consensus 450 s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 450 TPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred CHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 99999999999999864 899999997 77777777777654
No 42
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5.7e-37 Score=298.91 Aligned_cols=280 Identities=15% Similarity=0.159 Sum_probs=189.3
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHH
Q 011620 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145 (481)
Q Consensus 66 ~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 145 (481)
+..++++++.+|||||||++|+++++..+..+ +++++|++||++|+.|+++.+..+ .+....+..
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~---~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~------ 69 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR---RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAF------ 69 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCC------
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc---CCeEEEEcchHHHHHHHHHHHhcC------CeEEecccc------
Confidence 44589999999999999999999998877653 458999999999999999888743 222111110
Q ss_pred HHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcC-------CCcccCCccEEEEecchhhhhHhHHhHH
Q 011620 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-------RGFTLEHLCYLVVDETDRLLREAYQAWL 218 (481)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~-------~~~~~~~~~~iViDE~H~~~~~~~~~~~ 218 (481)
-.++||+.+...+... ....+.++++||+||+|.+ +..+...+
T Consensus 70 -----------------------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~ 119 (440)
T 1yks_A 70 -----------------------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAAR 119 (440)
T ss_dssp -----------------------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHH
T ss_pred -----------------------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHH
Confidence 0255554443222210 1134778999999999997 44333222
Q ss_pred HHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCC
Q 011620 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (481)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~ 298 (481)
..+...... ...+++++|||+.+....+.... .+.....
T Consensus 120 ~~~~~~~~~-------------------------------------~~~~~l~~SAT~~~~~~~~~~~~--~~~~~~~-- 158 (440)
T 1yks_A 120 GWAAHRARA-------------------------------------NESATILMTATPPGTSDEFPHSN--GEIEDVQ-- 158 (440)
T ss_dssp HHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSCCCS--SCEEEEE--
T ss_pred HHHHHHhcc-------------------------------------CCceEEEEeCCCCchhhhhhhcC--CCeeEee--
Confidence 222222211 22389999999977655443321 1111100
Q ss_pred ccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHH
Q 011620 299 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 378 (481)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~ 378 (481)
.......... +...+.. .++++||||++++.++.+++.|++.+ ..+..+|| .+|.+++
T Consensus 159 -------------~~~~~~~~~~-~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~---~~v~~lhg----~~R~~~~ 216 (440)
T 1yks_A 159 -------------TDIPSEPWNT-GHDWILA-DKRPTAWFLPSIRAANVMAASLRKAG---KSVVVLNR----KTFEREY 216 (440)
T ss_dssp -------------CCCCSSCCSS-SCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTT---CCEEECCS----SSCC---
T ss_pred -------------eccChHHHHH-HHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcC---CCEEEecc----hhHHHHH
Confidence 0011111111 1122222 36799999999999999999999876 88999999 3578999
Q ss_pred HHHhcCCceEEEecccccccCCCCCCCEEEE-------------------ecCCCChhhHHHHHhhhhcC-CCCCcEEEE
Q 011620 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------------------YDKPAYIKTYIHRAGRTARA-GQLGRCFTL 438 (481)
Q Consensus 379 ~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~-------------------~~~p~s~~~~~Q~~GR~~R~-~~~g~~i~~ 438 (481)
+.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|.||+||+||. |+.|.|++|
T Consensus 217 ~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l 295 (440)
T 1yks_A 217 PTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYY 295 (440)
T ss_dssp -----CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred hhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEE
Confidence 999999999999999999999999 999986 88899999999999999997 689999999
Q ss_pred E---eCCcchhhhhhcccc
Q 011620 439 L---HKDEVCLVGCLTPLL 454 (481)
Q Consensus 439 ~---~~~~~~~~~~i~~~~ 454 (481)
+ ++.+...+..++..+
T Consensus 296 ~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 296 SEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CSCCCCCCTTBHHHHHHHH
T ss_pred eccCChhhhhhhhhhhHHh
Confidence 6 677777777776654
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=8.4e-36 Score=292.14 Aligned_cols=287 Identities=16% Similarity=0.192 Sum_probs=203.9
Q ss_pred CCCCCchhhHHHHHhhhCCCCCCCCE-EEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 47 GISSLFPVQVAVWQETIGPGLFERDL-CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~-iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
|+..++|.|. +++.+++ +++. ++.+|||||||++++++++..+.. .+.+++|++||++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~----~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFR----KKRLTIMDLHPGAGKTKRILPSIVREALL---RRLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGS----TTCEEEECCCTTSSCCTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHHh----cCCeEEEECCCCCCHhhHHHHHHHHHHHh---cCCcEEEECCCHHHHHHHHHHhc---
Confidence 6788999985 6777775 6665 899999999999999999877654 34589999999999999998875
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEec
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE 205 (481)
|..+....+.... ....+..|.++|++.+.+.+... ..+.++++||+||
T Consensus 70 ---g~~v~~~~~~~~~--------------------------~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDE 118 (451)
T 2jlq_A 70 ---GLPIRYQTPAVKS--------------------------DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDE 118 (451)
T ss_dssp ---TSCEEECCTTCSC--------------------------CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEET
T ss_pred ---Cceeeeeeccccc--------------------------cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeC
Confidence 3333322211100 01133578899999998877653 3477899999999
Q ss_pred chhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccc
Q 011620 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (481)
Q Consensus 206 ~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~ 285 (481)
||.+ +..+......+...... +..+++++|||++........
T Consensus 119 ah~~-~~~~~~~~~~~~~~~~~-------------------------------------~~~~~i~~SAT~~~~~~~~~~ 160 (451)
T 2jlq_A 119 AHFT-DPCSVAARGYISTRVEM-------------------------------------GEAAAIFMTATPPGSTDPFPQ 160 (451)
T ss_dssp TTCC-SHHHHHHHHHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSCC
T ss_pred CccC-CcchHHHHHHHHHhhcC-------------------------------------CCceEEEEccCCCccchhhhc
Confidence 9976 33333322222221110 234899999999764433322
Q ss_pred cccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEc
Q 011620 286 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365 (481)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~ 365 (481)
..+..+..... .+. ..+ ... ...+.. ..+++||||+++..++.+++.|++.+ +.+..+
T Consensus 161 ---~~~~~~~~~~~---~p~--~~~------~~~----~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g---~~~~~l 218 (451)
T 2jlq_A 161 ---SNSPIEDIERE---IPE--RSW------NTG----FDWITD-YQGKTVWFVPSIKAGNDIANCLRKSG---KRVIQL 218 (451)
T ss_dssp ---CSSCEEEEECC---CCS--SCC------SSS----CHHHHH-CCSCEEEECSSHHHHHHHHHHHHTTT---CCEEEE
T ss_pred ---CCCceEecCcc---CCc--hhh------HHH----HHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcC---CeEEEC
Confidence 22222211110 110 000 011 122222 35699999999999999999998876 788888
Q ss_pred cCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEec--------------------CCCChhhHHHHHhh
Q 011620 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD--------------------KPAYIKTYIHRAGR 425 (481)
Q Consensus 366 ~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~--------------------~p~s~~~~~Q~~GR 425 (481)
|+++. ..+++.|++|+.+|||||+++++|+|+|+ ++||+++ .|.+..+|+||+||
T Consensus 219 h~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GR 293 (451)
T 2jlq_A 219 SRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGR 293 (451)
T ss_dssp CTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTT
T ss_pred CHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccc
Confidence 88644 57899999999999999999999999999 9999988 89999999999999
Q ss_pred hhcCCC-CCcEEEEEe
Q 011620 426 TARAGQ-LGRCFTLLH 440 (481)
Q Consensus 426 ~~R~~~-~g~~i~~~~ 440 (481)
+||.|. .|.+++|..
T Consensus 294 aGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 294 IGRNPAQEDDQYVFSG 309 (451)
T ss_dssp SSCCTTCCCEEEEECS
T ss_pred cCCCCCCCccEEEEeC
Confidence 999987 788877764
No 44
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.2e-35 Score=295.49 Aligned_cols=351 Identities=17% Similarity=0.138 Sum_probs=221.6
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
+|. .|++.|..++..+++ |+ +..++||+|||++|++|++..... +..++|++||++|+.|.++++..+.
T Consensus 71 lg~-~p~~VQ~~~i~~ll~----G~--Iaem~TGsGKTlaf~LP~l~~~l~----g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNE----RC--IAEMRTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHS----SE--EEECCTTSCHHHHHHHHHHHHHTT----SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccC----Ce--eeeecCCchHHHHHHHHHHHHHHc----CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 465 899999999998876 65 999999999999999999854432 4579999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-HHhhhcCC-----CcccCCcc
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~~-----~~~~~~~~ 199 (481)
..+|+++..++|+...... ....+++|+|+||..| .+++.... .+.+..+.
T Consensus 140 ~~lgl~v~~i~GG~~~~~r-----------------------~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~ 196 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAPAK-----------------------REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLH 196 (853)
T ss_dssp HHTTCCEEECCTTCCHHHH-----------------------HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCC
T ss_pred HhcCCeEEEEeCCCCHHHH-----------------------HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCc
Confidence 9999999999998764322 1223579999999999 56665422 24568899
Q ss_pred EEEEecchhhh-hHh---------------HHhHHHHHHHhcccCcc---------ccccccccccccccccchhhhhcc
Q 011620 200 YLVVDETDRLL-REA---------------YQAWLPTVLQLTRSDNE---------NRFSDASTFLPSAFGSLKTIRRCG 254 (481)
Q Consensus 200 ~iViDE~H~~~-~~~---------------~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 254 (481)
++|+||||.++ +.+ +...+..++..++.... ..+.-........ +...+
T Consensus 197 ~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~------lte~g 270 (853)
T 2fsf_A 197 YALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVN------LTERG 270 (853)
T ss_dssp EEEESCHHHHTTTTTTCEEEEEEC--------------------------------------------------------
T ss_pred EEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEE------EcHHH
Confidence 99999999987 332 33444555544432100 0000000000000 00000
Q ss_pred ccccCCCCCCccee-----eEEEeEEEecCcccc---c--------------------------cc---------c----
Q 011620 255 VERGFKDKPYPRLV-----KMVLSATLTQDPNKL---A--------------------------QL---------D---- 287 (481)
Q Consensus 255 ~~~~~~~~~~~~~~-----~i~~Sat~~~~~~~~---~--------------------------~~---------~---- 287 (481)
.. ..+..+.... -.++|||.+.....+ . .. +
T Consensus 271 ~~--~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQa 348 (853)
T 2fsf_A 271 LV--LIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQA 348 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH--HHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHH
Confidence 00 0000000000 013344322100000 0 00 0
Q ss_pred -----------------------------------------------cCCceeeecCCccccCCcccccceecccCCCcH
Q 011620 288 -----------------------------------------------LHHPLFLTTGETRYKLPERLESYKLICESKLKP 320 (481)
Q Consensus 288 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 320 (481)
.++..++......+..... ....+......|.
T Consensus 349 ieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d-~~d~v~~~~~~K~ 427 (853)
T 2fsf_A 349 VEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKD-LPDLVYMTEAEKI 427 (853)
T ss_dssp --------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEE-CCCEEESSHHHHH
T ss_pred HHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeec-CCcEEEeCHHHHH
Confidence 0000000000000000000 0112334455677
Q ss_pred HHHHHHHHh--cCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEeccccccc
Q 011620 321 LYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398 (481)
Q Consensus 321 ~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~G 398 (481)
..+...+.. ..+.++||||+|++.++.++..|.+.+ +++..+|++....++..+.+.|+.| .|+|||+++++|
T Consensus 428 ~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~g---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRG 502 (853)
T 2fsf_A 428 QAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAG---IKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRG 502 (853)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTT---CCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCC
Confidence 777777654 246789999999999999999999887 8899999998888887788888887 699999999999
Q ss_pred CCCCCC-------------------------------------CEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeC
Q 011620 399 MDVEGV-------------------------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441 (481)
Q Consensus 399 idi~~~-------------------------------------~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~ 441 (481)
+||+.. .+||+++.|.|...|.||+||+||.|.+|.++.|++.
T Consensus 503 tDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~ 582 (853)
T 2fsf_A 503 TDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSM 582 (853)
T ss_dssp SCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEET
T ss_pred cCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecc
Confidence 999863 5999999999999999999999999999999999998
Q ss_pred Ccc
Q 011620 442 DEV 444 (481)
Q Consensus 442 ~~~ 444 (481)
.+.
T Consensus 583 eD~ 585 (853)
T 2fsf_A 583 EDA 585 (853)
T ss_dssp TSG
T ss_pred cHH
Confidence 774
No 45
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.7e-34 Score=289.34 Aligned_cols=357 Identities=18% Similarity=0.162 Sum_probs=245.7
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
+|+ .|++.|..++..+++ |+ +.+++||+|||+++.+|++..... +..++|++||+.|+.|.++++..+.
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~----G~--Iaem~TGeGKTLa~~LP~~l~aL~----g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHL----GN--VAEMKTGEGKTLTCVLPAYLNALA----GNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHT----TE--EEECCTTSCHHHHTHHHHHHHHTT----TSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhc----CC--EEEecCCCccHHHHHHHHHHHHHh----CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 688 999999999998875 65 999999999999999999644333 3369999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-HHhhhcC-----CCcccCCcc
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLC 199 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~-----~~~~~~~~~ 199 (481)
..+|+++.++.|+....... ...+++|+|+||..| .+++... ..+.+..+.
T Consensus 177 ~~lGLsv~~i~gg~~~~~r~-----------------------~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~ 233 (922)
T 1nkt_A 177 RFLGLQVGVILATMTPDERR-----------------------VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHH 233 (922)
T ss_dssp HHTTCCEEECCTTCCHHHHH-----------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCC
T ss_pred hhcCCeEEEEeCCCCHHHHH-----------------------HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCC
Confidence 99999999999987643321 123479999999998 5555432 135577899
Q ss_pred EEEEecchhhhh----------------HhHHhHHHHHHHhccc---------Cccc------------------ccccc
Q 011620 200 YLVVDETDRLLR----------------EAYQAWLPTVLQLTRS---------DNEN------------------RFSDA 236 (481)
Q Consensus 200 ~iViDE~H~~~~----------------~~~~~~~~~i~~~~~~---------~~~~------------------~~~~~ 236 (481)
++|+||||.++. .++...+..++..+.. .... .++..
T Consensus 234 ~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat 313 (922)
T 1nkt_A 234 YAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAA 313 (922)
T ss_dssp EEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCST
T ss_pred EEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCc
Confidence 999999999873 2466777777777652 1000 01100
Q ss_pred cccccccccc-chh---hhhc-------c---ccc------------------------cC------------CCCCC--
Q 011620 237 STFLPSAFGS-LKT---IRRC-------G---VER------------------------GF------------KDKPY-- 264 (481)
Q Consensus 237 ~~~~~~~~~~-~~~---~~~~-------~---~~~------------------------~~------------~~~~~-- 264 (481)
...+...... +.. .... + +.+ ++ ....+
T Consensus 314 ~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr 393 (922)
T 1nkt_A 314 NSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFR 393 (922)
T ss_dssp TCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHT
T ss_pred chhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHH
Confidence 0000000000 000 0000 0 000 00 00000
Q ss_pred cceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhc--CCCcEEEEcCCc
Q 011620 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSV 342 (481)
Q Consensus 265 ~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~ 342 (481)
...++.+||+|.......+...+..+ ++.... ..+..... ....+......|...+...+... .+.++||||+|+
T Consensus 394 ~Y~kL~GMTGTa~te~~Ef~~iY~l~-vv~IPt-n~p~~R~d-~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Si 470 (922)
T 1nkt_A 394 LYDKLAGMTGTAQTEAAELHEIYKLG-VVSIPT-NMPMIRED-QSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSV 470 (922)
T ss_dssp TSSEEEEEESCCGGGHHHHHHHHCCE-EEECCC-SSCCCCEE-CCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred hhhhhhccccCchhHHHHHHHHhCCC-eEEeCC-CCCccccc-CCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCH
Confidence 01245667777655444443333222 222222 21111111 11223344556777777766542 466899999999
Q ss_pred hhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCC------------------
Q 011620 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV------------------ 404 (481)
Q Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~------------------ 404 (481)
+.++.++..|.+.+ +++..+|++....++..+.+.|+.| .|+|||+++++|+||+..
T Consensus 471 e~sE~Ls~~L~~~G---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~ 545 (922)
T 1nkt_A 471 ERSEYLSRQFTKRR---IPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDP 545 (922)
T ss_dssp HHHHHHHHHHHHTT---CCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccc
Confidence 99999999999887 8899999998877777777777777 699999999999999864
Q ss_pred ----------------------------------CEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 405 ----------------------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 405 ----------------------------------~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
.+||+++.|.|...|.||+||+||.|.+|.++.|++..|.
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 546 VETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999998775
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2e-35 Score=305.06 Aligned_cols=330 Identities=18% Similarity=0.225 Sum_probs=229.6
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHh-hccCCccEEEEcccHH
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRD 112 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~~lil~P~~~ 112 (481)
++++.+.+.+.+.+ ..|.+.|++++..++. .++++++.||||+|||+. ++++-.... ....+.++++++|+++
T Consensus 78 ~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~---~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~~~g~~ilvl~P~r~ 151 (773)
T 2xau_A 78 EFTPKYVDILKIRR-ELPVHAQRDEFLKLYQ---NNQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQVACTQPRRV 151 (773)
T ss_dssp BCCHHHHHHHHHHT-TSGGGGGHHHHHHHHH---HCSEEEEECCTTSSHHHH--HHHHHHHHHCGGGGTCEEEEEESCHH
T ss_pred CCCHHHHHHHHHhh-cCChHHHHHHHHHHHh---CCCeEEEECCCCCCHHHH--HHHHHHHhccccCCCceEEecCchHH
Confidence 38999999999888 6899999999988775 356799999999999993 333311111 1112457999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCC
Q 011620 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (481)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~ 192 (481)
|+.|+++.+.... +..+...+|.....+. ......+|+++||+++.+.+...
T Consensus 152 La~q~~~~l~~~~---~~~v~~~vG~~i~~~~-----------------------~~~~~~~I~v~T~G~l~r~l~~~-- 203 (773)
T 2xau_A 152 AAMSVAQRVAEEM---DVKLGEEVGYSIRFEN-----------------------KTSNKTILKYMTDGMLLREAMED-- 203 (773)
T ss_dssp HHHHHHHHHHHHT---TCCBTTTEEEEETTEE-----------------------ECCTTCSEEEEEHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHh---CCchhheecceecccc-----------------------ccCCCCCEEEECHHHHHHHHhhC--
Confidence 9999988765543 3333222221100000 01134689999999999877653
Q ss_pred cccCCccEEEEecchh-hhhHh-HHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeE
Q 011620 193 FTLEHLCYLVVDETDR-LLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (481)
Q Consensus 193 ~~~~~~~~iViDE~H~-~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (481)
..+.++++||+||+|. .++.. ....+..+.... +..+++
T Consensus 204 ~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~---------------------------------------~~~~iI 244 (773)
T 2xau_A 204 HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR---------------------------------------PDLKII 244 (773)
T ss_dssp TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC---------------------------------------TTCEEE
T ss_pred ccccCCCEEEecCccccccchHHHHHHHHHHHHhC---------------------------------------CCceEE
Confidence 3477899999999996 44432 223333333322 123899
Q ss_pred EEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHH----HHHHHHHhcCCCcEEEEcCCchhHH
Q 011620 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL----YLVALLQSLGEEKCIVFTSSVESTH 346 (481)
Q Consensus 271 ~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~----~l~~~l~~~~~~~~lVf~~s~~~~~ 346 (481)
++|||+. ...+.......+. +....... .+..++.......... .+..+.....++++||||+++..++
T Consensus 245 l~SAT~~--~~~l~~~~~~~~v-i~v~gr~~----pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~ 317 (773)
T 2xau_A 245 IMSATLD--AEKFQRYFNDAPL-LAVPGRTY----PVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIE 317 (773)
T ss_dssp EEESCSC--CHHHHHHTTSCCE-EECCCCCC----CEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHH
T ss_pred EEecccc--HHHHHHHhcCCCc-ccccCccc----ceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHH
Confidence 9999984 2333322222233 22222211 1222333232222222 2233333446789999999999999
Q ss_pred HHHHHHhhc--------CCcceEEEEccCccChHHHHHHHHHHh-----cCCceEEEecccccccCCCCCCCEEEEecC-
Q 011620 347 RLCTLLNHF--------GELRIKIKEYSGLQRQSVRSKTLKAFR-----EGKIQVLVSSDAMTRGMDVEGVNNVVNYDK- 412 (481)
Q Consensus 347 ~l~~~l~~~--------~~~~~~~~~~~~~~~~~~r~~~~~~f~-----~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~- 412 (481)
.+++.|.+. ...++.+..+||+++..+|..+++.|. +|+.+|||||+++++|+|+|++++||+++.
T Consensus 318 ~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~ 397 (773)
T 2xau_A 318 DAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFS 397 (773)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEE
T ss_pred HHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCc
Confidence 999999751 123478999999999999999999999 999999999999999999999999999877
Q ss_pred -----------------CCChhhHHHHHhhhhcCCCCCcEEEEEeCCcc
Q 011620 413 -----------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (481)
Q Consensus 413 -----------------p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~ 444 (481)
|.|...|.||+||+||. ..|.|+.++++.+.
T Consensus 398 k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 398 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred cceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 88999999999999998 78999999976554
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3.6e-35 Score=297.52 Aligned_cols=309 Identities=14% Similarity=0.162 Sum_probs=207.7
Q ss_pred HHHHcCCC-----CCchhhH-----HHHHhhh--CCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 42 ALQNMGIS-----SLFPVQV-----AVWQETI--GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 42 ~l~~~~~~-----~~~~~Q~-----~a~~~~~--~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
++..+||. .|++.|. ++++.++ ..+..++++++.+|||||||++|+++++..+.. .+.+++|++|
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~---~~~~~lilaP 278 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ---KRLRTAVLAP 278 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH---TTCCEEEEES
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh---CCCcEEEEcc
Confidence 34455666 8999999 7876655 112258999999999999999999999987654 3468999999
Q ss_pred cHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhc
Q 011620 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (481)
Q Consensus 110 ~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~ 189 (481)
|++|+.|+++.+..+ ++. ...+... . . ...+.-+-+.+...+.+.+..
T Consensus 279 Tr~La~Q~~~~l~~~----~i~--~~~~~l~------~-v-------------------~tp~~ll~~l~~~~l~~~l~~ 326 (673)
T 2wv9_A 279 TRVVAAEMAEALRGL----PVR--YLTPAVQ------R-E-------------------HSGNEIVDVMCHATLTHRLMS 326 (673)
T ss_dssp SHHHHHHHHHHTTTS----CCE--ECCC---------C-C-------------------CCSCCCEEEEEHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC----Cee--eeccccc------c-c-------------------CCHHHHHHHHHhhhhHHHHhc
Confidence 999999999888744 221 1111000 0 0 001112334444445444443
Q ss_pred CCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceee
Q 011620 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (481)
Q Consensus 190 ~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (481)
. ..+.++++||+||+|.+ +..+......+...... ...++
T Consensus 327 ~--~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~-------------------------------------~~~~v 366 (673)
T 2wv9_A 327 P--LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEA-------------------------------------GEAAA 366 (673)
T ss_dssp S--SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHT-------------------------------------TSCEE
T ss_pred c--cccccceEEEEeCCccc-CccHHHHHHHHHHhccc-------------------------------------cCCcE
Confidence 2 35778999999999987 22222222222222210 12389
Q ss_pred EEEeEEEecCcccccccccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHH
Q 011620 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349 (481)
Q Consensus 270 i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~ 349 (481)
+++|||+......+.... .+...... ......... +...+.. .++++||||++++.++.++
T Consensus 367 l~~SAT~~~~i~~~~~~~--~~i~~v~~---------------~~~~~~~~~-~l~~l~~-~~~~~lVF~~s~~~~e~la 427 (673)
T 2wv9_A 367 IFMTATPPGTSDPFPDTN--SPVHDVSS---------------EIPDRAWSS-GFEWITD-YAGKTVWFVASVKMSNEIA 427 (673)
T ss_dssp EEECSSCTTCCCSSCCCS--SCEEEEEC---------------CCCSSCCSS-CCHHHHS-CCSCEEEECSSHHHHHHHH
T ss_pred EEEcCCCChhhhhhcccC--CceEEEee---------------ecCHHHHHH-HHHHHHh-CCCCEEEEECCHHHHHHHH
Confidence 999999976655443321 11111000 000011111 1122222 4679999999999999999
Q ss_pred HHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEE--------------------
Q 011620 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------------------- 409 (481)
Q Consensus 350 ~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~-------------------- 409 (481)
+.|++.+ +.+..+||. +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 428 ~~L~~~g---~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll 499 (673)
T 2wv9_A 428 QCLQRAG---KRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILS 499 (673)
T ss_dssp HHHHTTT---CCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEEC
T ss_pred HHHHhCC---CeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceec
Confidence 9999875 889999983 688999999999999999999999999999 999997
Q ss_pred ecCCCChhhHHHHHhhhhcC-CCCCcEEEEE---eCCcchhhhhhcc
Q 011620 410 YDKPAYIKTYIHRAGRTARA-GQLGRCFTLL---HKDEVCLVGCLTP 452 (481)
Q Consensus 410 ~~~p~s~~~~~Q~~GR~~R~-~~~g~~i~~~---~~~~~~~~~~i~~ 452 (481)
++.|.+..+|.||+||+||. ++.|.|++|+ ++.+...+..++.
T Consensus 500 ~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~ 546 (673)
T 2wv9_A 500 VPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEA 546 (673)
T ss_dssp CSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHH
T ss_pred ccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHH
Confidence 56889999999999999998 7889999995 5666655555444
No 48
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.2e-35 Score=300.56 Aligned_cols=318 Identities=17% Similarity=0.162 Sum_probs=187.0
Q ss_pred CCchhhHHHHHhhhCCCCCC-CCEEEECCCCchHHHHhHHHHHHHHHhh-----ccCCccEEEEcccHHHHHHHH-HHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRDLALQVK-DVFA 122 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~-~~~iv~~~tGsGKT~~~~~~i~~~l~~~-----~~~~~~~lil~P~~~L~~q~~-~~~~ 122 (481)
.||++|.+|++.+++.+..+ +++++++|||+|||++++..+...+..+ ...+.++||++|+++|+.|+. +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 79999999999887655445 5689999999999999766554444332 014568999999999999998 7777
Q ss_pred HhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcC---CCcccCCcc
Q 011620 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT---RGFTLEHLC 199 (481)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~---~~~~~~~~~ 199 (481)
.+. ..+..+.++. ...+.+|+|+||++|....... ..+....++
T Consensus 258 ~~~----~~~~~~~~~~-----------------------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~ 304 (590)
T 3h1t_A 258 PFG----DARHKIEGGK-----------------------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFD 304 (590)
T ss_dssp TTC----SSEEECCC-------------------------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCS
T ss_pred hcc----hhhhhhhccC-----------------------------CCCCCcEEEEEhhhhccccccccccccCCCCccC
Confidence 663 3333333221 2245699999999998875421 123456789
Q ss_pred EEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecC
Q 011620 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (481)
Q Consensus 200 ~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~ 279 (481)
+||+||||++..... ..+..++..+. ..+.+++|||+...
T Consensus 305 lvIiDEaH~~~~~~~-~~~~~il~~~~---------------------------------------~~~~l~lTATP~~~ 344 (590)
T 3h1t_A 305 LIIIDECHRGSARDN-SNWREILEYFE---------------------------------------PAFQIGMTATPLRE 344 (590)
T ss_dssp EEEESCCC----------CHHHHHHST---------------------------------------TSEEEEEESSCSCT
T ss_pred EEEEECCccccccch-HHHHHHHHhCC---------------------------------------cceEEEeccccccc
Confidence 999999999865421 22333444332 12689999998744
Q ss_pred cccccccccCCceee------------------ecCCc----cccC--------Ccccccceeccc-------CCCcHHH
Q 011620 280 PNKLAQLDLHHPLFL------------------TTGET----RYKL--------PERLESYKLICE-------SKLKPLY 322 (481)
Q Consensus 280 ~~~~~~~~~~~~~~~------------------~~~~~----~~~~--------~~~~~~~~~~~~-------~~~k~~~ 322 (481)
...........+... ..... .... ...+........ ...+...
T Consensus 345 ~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 424 (590)
T 3h1t_A 345 DNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDA 424 (590)
T ss_dssp TTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHH
T ss_pred cchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHH
Confidence 322111111111110 00000 0000 000000000000 0011112
Q ss_pred ----HHHHHHhc-CCCcEEEEcCCchhHHHHHHHHhhcCCc-----ceEEEEccCccChHHHHHHHHHHhcCCce---EE
Q 011620 323 ----LVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSGLQRQSVRSKTLKAFREGKIQ---VL 389 (481)
Q Consensus 323 ----l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vL 389 (481)
+...+... ..+++||||+++.+++.+++.|.+.+.. ...+..+||.++. +|.++++.|++|+.+ ||
T Consensus 425 i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~il 503 (590)
T 3h1t_A 425 FAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVIL 503 (590)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEE
T ss_pred HHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEE
Confidence 22223332 4579999999999999999999876421 1236778888764 799999999998766 88
Q ss_pred EecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCC--CCcEEEEEeC
Q 011620 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ--LGRCFTLLHK 441 (481)
Q Consensus 390 i~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~--~g~~i~~~~~ 441 (481)
|+|+++++|+|+|++++||+++.|+|+..|+||+||++|.+. .+..+++++.
T Consensus 504 vtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~ 557 (590)
T 3h1t_A 504 TTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDY 557 (590)
T ss_dssp EESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEEC
T ss_pred EECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEec
Confidence 899999999999999999999999999999999999999764 3444444443
No 49
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.3e-34 Score=307.03 Aligned_cols=136 Identities=21% Similarity=0.209 Sum_probs=118.7
Q ss_pred CCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhh-cCCcceEEEEccCccChHHHHHHHHHHhcCC--ceEEEec
Q 011620 316 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSS 392 (481)
Q Consensus 316 ~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLi~t 392 (481)
...|...+..++....++++||||++...++.++..|.+ .+ +.+..+||+++..+|..+++.|++|+ ++|||||
T Consensus 487 ~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g---~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 487 FDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREG---IRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp TSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTC---CCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred ccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 445778888888887889999999999999999999985 34 88999999999999999999999998 9999999
Q ss_pred ccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccc
Q 011620 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLL 454 (481)
Q Consensus 393 ~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~ 454 (481)
+++++|+|+|++++||++++|+++..|.|++||++|.|+.+.++++...........+.+.+
T Consensus 564 ~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 564 EIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp CCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred chhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999988877776554444444444433
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=5.7e-35 Score=286.66 Aligned_cols=269 Identities=17% Similarity=0.219 Sum_probs=188.8
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHH
Q 011620 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 146 (481)
..++++++.+|||||||++|+++++..+.. .+.+++|++|+++|+.|+++.+. |..+....+.....
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~---- 85 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQ---QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE---- 85 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHH---TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC----------
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEECchHHHHHHHHHHhc------CceEeEEecccccC----
Confidence 347899999999999999999999987764 34579999999999999998886 33333222211100
Q ss_pred HhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhh-----hhHhHHhHHHHH
Q 011620 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-----LREAYQAWLPTV 221 (481)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~-----~~~~~~~~~~~i 221 (481)
-..+..+.++|...+...+... ..+.++++||+||||.+ ...++..
T Consensus 86 ----------------------~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~~----- 136 (459)
T 2z83_A 86 ----------------------HQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYIA----- 136 (459)
T ss_dssp ------------------------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHHH-----
T ss_pred ----------------------CCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHHH-----
Confidence 0122357778888877666553 44778999999999973 2222211
Q ss_pred HHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccc
Q 011620 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301 (481)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (481)
..... +..+++++|||++.....+... ..+.......
T Consensus 137 -~~~~~-------------------------------------~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~~--- 173 (459)
T 2z83_A 137 -TKVEL-------------------------------------GEAAAIFMTATPPGTTDPFPDS--NAPIHDLQDE--- 173 (459)
T ss_dssp -HHHHT-------------------------------------TSCEEEEECSSCTTCCCSSCCC--SSCEEEEECC---
T ss_pred -HHhcc-------------------------------------CCccEEEEEcCCCcchhhhccC--CCCeEEeccc---
Confidence 11100 2348999999998665444332 2222221100
Q ss_pred cCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHH
Q 011620 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (481)
Q Consensus 302 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f 381 (481)
.+. ....... ..+.. .++++||||+++..++.+++.|.+.+ +.+..+|+. +|..+++.|
T Consensus 174 -~~~--------~~~~~~~----~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g---~~v~~lh~~----~R~~~~~~f 232 (459)
T 2z83_A 174 -IPD--------RAWSSGY----EWITE-YAGKTVWFVASVKMGNEIAMCLQRAG---KKVIQLNRK----SYDTEYPKC 232 (459)
T ss_dssp -CCS--------SCCSSCC----HHHHH-CCSCEEEECSCHHHHHHHHHHHHHTT---CCEEEESTT----CCCCCGGGS
T ss_pred -CCc--------chhHHHH----HHHHh-cCCCEEEEeCChHHHHHHHHHHHhcC---CcEEecCHH----HHHHHHhhc
Confidence 000 0001111 22222 26799999999999999999999876 788889984 577889999
Q ss_pred hcCCceEEEecccccccCCCCCCCEEEE--------------------ecCCCChhhHHHHHhhhhcCCC-CCcEEEEEe
Q 011620 382 REGKIQVLVSSDAMTRGMDVEGVNNVVN--------------------YDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLH 440 (481)
Q Consensus 382 ~~g~~~vLi~t~~l~~Gidi~~~~~vI~--------------------~~~p~s~~~~~Q~~GR~~R~~~-~g~~i~~~~ 440 (481)
++|+.+|||||+++++|+|+|+ ++||+ ++.|.|..+|+||+||+||.|. .|.+++|+.
T Consensus 233 ~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~ 311 (459)
T 2z83_A 233 KNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGG 311 (459)
T ss_dssp SSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEc
Confidence 9999999999999999999999 99998 6699999999999999999987 899999998
Q ss_pred CC
Q 011620 441 KD 442 (481)
Q Consensus 441 ~~ 442 (481)
+.
T Consensus 312 ~~ 313 (459)
T 2z83_A 312 AT 313 (459)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3e-34 Score=286.10 Aligned_cols=290 Identities=18% Similarity=0.232 Sum_probs=206.1
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
.++++|.++ ...+..++++++.+|||+|||.++.+++++ ++.+++|++|+++|+.|+++.+.+.. +
T Consensus 217 P~~~~q~~i----~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------~g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSSP----PAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------QGYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCSC----CCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHHH----HHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------CCCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 455666544 444445789999999999999998887764 24479999999999999988776553 5
Q ss_pred ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhh
Q 011620 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~ 209 (481)
..+....|+.. ...+.+|+|+||++|+ .. ..+.+.++++||+||||.
T Consensus 283 ~~vg~~vG~~~----------------------------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH~- 329 (666)
T 3o8b_A 283 IDPNIRTGVRT----------------------------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECHS- 329 (666)
T ss_dssp CCCEEECSSCE----------------------------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTTC-
T ss_pred CCeeEEECcEe----------------------------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccchh-
Confidence 55666666532 1245799999999983 22 456678899999999985
Q ss_pred hhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccC
Q 011620 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (481)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~ 289 (481)
.+..+...+..++........ ...+++|||+...... .
T Consensus 330 l~~~~~~~l~~Il~~l~~~~~------------------------------------~llil~SAT~~~~i~~------~ 367 (666)
T 3o8b_A 330 TDSTTILGIGTVLDQAETAGA------------------------------------RLVVLATATPPGSVTV------P 367 (666)
T ss_dssp CSHHHHHHHHHHHHHTTTTTC------------------------------------SEEEEEESSCTTCCCC------C
T ss_pred cCccHHHHHHHHHHhhhhcCC------------------------------------ceEEEECCCCCccccc------C
Confidence 466666667777766643221 1367779998764221 1
Q ss_pred CceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCcc
Q 011620 290 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 369 (481)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 369 (481)
.+........ ............ . +....++++||||++++.++.+++.|++.+ +.+..+||++
T Consensus 368 ~p~i~~v~~~---~~~~i~~~~~~~----~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g---~~v~~lHG~l 430 (666)
T 3o8b_A 368 HPNIEEVALS---NTGEIPFYGKAI----P-------IEAIRGGRHLIFCHSKKKCDELAAKLSGLG---INAVAYYRGL 430 (666)
T ss_dssp CTTEEEEECB---SCSSEEETTEEE----C-------GGGSSSSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECTTS
T ss_pred CcceEEEeec---ccchhHHHHhhh----h-------hhhccCCcEEEEeCCHHHHHHHHHHHHhCC---CcEEEecCCC
Confidence 1111100000 000000000000 0 122357899999999999999999999876 8899999999
Q ss_pred ChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEE----------Eec-----------CCCChhhHHHHHhhhhc
Q 011620 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV----------NYD-----------KPAYIKTYIHRAGRTAR 428 (481)
Q Consensus 370 ~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI----------~~~-----------~p~s~~~~~Q~~GR~~R 428 (481)
++.+ |.++..+|||||+++++|||+| +++|| +|| .|.+..+|+||+||+||
T Consensus 431 ~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR 502 (666)
T 3o8b_A 431 DVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR 502 (666)
T ss_dssp CGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS
T ss_pred CHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC
Confidence 9864 4556679999999999999997 99988 566 89999999999999999
Q ss_pred CCCCCcEEEEEeCCcchh--h--hhhccccc
Q 011620 429 AGQLGRCFTLLHKDEVCL--V--GCLTPLLL 455 (481)
Q Consensus 429 ~~~~g~~i~~~~~~~~~~--~--~~i~~~~~ 455 (481)
|+.|. +.|+++.+... + ..+++.+.
T Consensus 503 -g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~ 531 (666)
T 3o8b_A 503 -GRRGI-YRFVTPGERPSGMFDSSVLCECYD 531 (666)
T ss_dssp -SSCEE-EEESCCCCBCSSBCCHHHHHHHHH
T ss_pred -CCCCE-EEEEecchhhcccccHHHHHHHhc
Confidence 88899 99999887665 3 44444443
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1e-33 Score=275.51 Aligned_cols=270 Identities=13% Similarity=0.100 Sum_probs=187.1
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHh
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 148 (481)
++++++++|||||||++|+++++..+.. .+.+++|++||++|+.|+++.+. ++.+....+.....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~---~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~~------ 66 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK---KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQSE------ 66 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcccc------
Confidence 6899999999999999999988866554 34589999999999999888775 44555444432110
Q ss_pred hhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccC
Q 011620 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228 (481)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~ 228 (481)
...+..+.+.|.+.+.+.+.. ...+.++++||+||+|.+ ...+......+......
T Consensus 67 --------------------~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~- 122 (431)
T 2v6i_A 67 --------------------RTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM- 122 (431)
T ss_dssp ----------------------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT-
T ss_pred --------------------CCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC-
Confidence 012235667788877766655 234778999999999997 44333333333333211
Q ss_pred ccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccc
Q 011620 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308 (481)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (481)
+..+++++|||+.+....+... ..+.......
T Consensus 123 ------------------------------------~~~~~l~~SAT~~~~~~~~~~~--~~~i~~~~~~---------- 154 (431)
T 2v6i_A 123 ------------------------------------GDAGAIFMTATPPGTTEAFPPS--NSPIIDEETR---------- 154 (431)
T ss_dssp ------------------------------------TSCEEEEEESSCTTCCCSSCCC--SSCCEEEECC----------
T ss_pred ------------------------------------CCCcEEEEeCCCCcchhhhcCC--CCceeecccc----------
Confidence 2238999999998654443321 1111110000
Q ss_pred cceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceE
Q 011620 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388 (481)
Q Consensus 309 ~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 388 (481)
... .+...+...+.. .++++||||++++.++.+++.|++.+ ..+..+||+ +|.++++.|++|+.+|
T Consensus 155 -----~~~-~~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~---~~v~~lhg~----~r~~~~~~f~~g~~~v 220 (431)
T 2v6i_A 155 -----IPD-KAWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAG---KKVLYLNRK----TFESEYPKCKSEKWDF 220 (431)
T ss_dssp -----CCS-SCCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTT---CCEEEESTT----THHHHTTHHHHSCCSE
T ss_pred -----CCH-HHHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcC---CeEEEeCCc----cHHHHHHhhcCCCCeE
Confidence 000 011111223333 35789999999999999999999875 789999986 5788999999999999
Q ss_pred EEecccccccCCCCCCCE-----------------EEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEe
Q 011620 389 LVSSDAMTRGMDVEGVNN-----------------VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLH 440 (481)
Q Consensus 389 Li~t~~l~~Gidi~~~~~-----------------vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~ 440 (481)
||||+++++|+|+| +.+ ||+++.|.+..+|.||+||+||.|..+.+++++.
T Consensus 221 LVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 221 VITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred EEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 99999999999999 555 5778899999999999999999886554544444
No 53
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.2e-33 Score=282.39 Aligned_cols=310 Identities=16% Similarity=0.221 Sum_probs=205.2
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (481)
..|+|||.+++..+......+.++++.++||+|||++++..+...... ....++||+||+ .|+.||.+++.++++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~--~~~~~~LIv~P~-~l~~qw~~e~~~~~~-- 110 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE--NELTPSLVICPL-SVLKNWEEELSKFAP-- 110 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT--TCCSSEEEEECS-TTHHHHHHHHHHHCT--
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc--CCCCCEEEEccH-HHHHHHHHHHHHHCC--
Confidence 379999999988764322346789999999999999977655544322 233479999995 688999999999976
Q ss_pred CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh
Q 011620 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~ 208 (481)
+.++..++|+.... ....++|+|+||+++..... +....+++||+||||+
T Consensus 111 ~~~v~~~~g~~~~~--------------------------~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~ 160 (500)
T 1z63_A 111 HLRFAVFHEDRSKI--------------------------KLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQN 160 (500)
T ss_dssp TSCEEECSSSTTSC--------------------------CGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGG
T ss_pred CceEEEEecCchhc--------------------------cccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccc
Confidence 45666666654210 11346899999999865433 2234689999999999
Q ss_pred hhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccc-cc---
Q 011620 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK-LA--- 284 (481)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~-~~--- 284 (481)
+.+... .....+..+. ....+++||||..+... +.
T Consensus 161 ~kn~~~--~~~~~l~~l~---------------------------------------~~~~l~LTaTP~~n~~~el~~ll 199 (500)
T 1z63_A 161 IKNPQT--KIFKAVKELK---------------------------------------SKYRIALTGTPIENKVDDLWSIM 199 (500)
T ss_dssp GSCTTS--HHHHHHHTSC---------------------------------------EEEEEEECSSCSTTCHHHHHHHH
T ss_pred cCCHhH--HHHHHHHhhc---------------------------------------cCcEEEEecCCCCCCHHHHHHHH
Confidence 854331 1111111111 11457777776432100 00
Q ss_pred ---------------------------------ccccCCceeeecCCcc----ccCCcccccc-----------------
Q 011620 285 ---------------------------------QLDLHHPLFLTTGETR----YKLPERLESY----------------- 310 (481)
Q Consensus 285 ---------------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~----------------- 310 (481)
...+ .+......... ..++......
T Consensus 200 ~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~ 278 (500)
T 1z63_A 200 TFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEV 278 (500)
T ss_dssp HHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHH
T ss_pred HHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHH
Confidence 0000 00110000000 0000000000
Q ss_pred ---------------------------------------eecccCCCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHH
Q 011620 311 ---------------------------------------KLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLC 349 (481)
Q Consensus 311 ---------------------------------------~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~ 349 (481)
........|...+.+++... .+.++||||++...++.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~ 358 (500)
T 1z63_A 279 ENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIR 358 (500)
T ss_dssp HHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHH
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHH
Confidence 00011234555556666543 5679999999999999999
Q ss_pred HHHhhc-CCcceEEEEccCccChHHHHHHHHHHhcC-Cce-EEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhh
Q 011620 350 TLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (481)
Q Consensus 350 ~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~ 426 (481)
+.|... + ..+..+||+++..+|.++++.|++| +.+ +|++|+++++|+|+|.+++||++++|+++..+.|++||+
T Consensus 359 ~~l~~~~~---~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~ 435 (500)
T 1z63_A 359 NIIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRV 435 (500)
T ss_dssp HHHHHHHT---CCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTT
T ss_pred HHHHHhhC---CCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHH
Confidence 999874 5 6788899999999999999999998 555 689999999999999999999999999999999999999
Q ss_pred hcCCCCCcEEEE
Q 011620 427 ARAGQLGRCFTL 438 (481)
Q Consensus 427 ~R~~~~g~~i~~ 438 (481)
+|.|+.+.+.++
T Consensus 436 ~R~Gq~~~v~v~ 447 (500)
T 1z63_A 436 YRIGQTRNVIVH 447 (500)
T ss_dssp TTTTTTSCEEEE
T ss_pred HHcCCCCeeEEE
Confidence 999987776444
No 54
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=2.7e-30 Score=263.59 Aligned_cols=362 Identities=18% Similarity=0.175 Sum_probs=212.7
Q ss_pred CCchhhHHHHHhhhCCC-----CCCCCEEEECCCCchHHHHhHHHHHHHHHhhcc---CCccEEEEcccHHHHHHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPG-----LFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPTRDLALQVKDVF 121 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~-----~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~---~~~~~lil~P~~~L~~q~~~~~ 121 (481)
.|||||.+++..++... ..+.+.|+..+||+|||++++..+...+..... ...++||+||+ .|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 79999999998876422 345679999999999999988766665544322 12359999997 7889999999
Q ss_pred HHhccccCceEEEeecCCchHH--HHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCcc
Q 011620 122 AAIAPAVGLSVGLAVGQSSIAD--EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (481)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~ 199 (481)
.+++.. .+.+..++++..... .......... .....+|+|+||+.+...... +....++
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~vvi~ty~~l~~~~~~---l~~~~~~ 194 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQG---------------MRIPTPILIISYETFRLHAEV---LHKGKVG 194 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCS---------------SCCSCCEEEEEHHHHHHHTTT---TTTSCCC
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcC---------------CCCCCcEEEeeHHHHHhhHHH---hhcCCcc
Confidence 999765 456666666543221 1111111000 012368999999999876433 3345688
Q ss_pred EEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccc---------------hhhh-------------
Q 011620 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSL---------------KTIR------------- 251 (481)
Q Consensus 200 ~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~------------- 251 (481)
+||+||||++.+..... ...+.. +... .+..-.+.++......+ ..+.
T Consensus 195 ~vI~DEaH~ikn~~~~~-~~al~~-l~~~--~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~ 270 (644)
T 1z3i_X 195 LVICDEGHRLKNSDNQT-YLALNS-MNAQ--RRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDA 270 (644)
T ss_dssp EEEETTGGGCCTTCHHH-HHHHHH-HCCS--EEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHST
T ss_pred EEEEECceecCChhhHH-HHHHHh-cccC--cEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCc
Confidence 99999999985433211 111111 1111 11111111111110000 0000
Q ss_pred ----------------------hccccc--cCCCCCCcceeeEEEeEEEecCcccccccc--------------------
Q 011620 252 ----------------------RCGVER--GFKDKPYPRLVKMVLSATLTQDPNKLAQLD-------------------- 287 (481)
Q Consensus 252 ----------------------~~~~~~--~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~-------------------- 287 (481)
...+.+ ..-....+..........+++.-..+....
T Consensus 271 ~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l 350 (644)
T 1z3i_X 271 DASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSL 350 (644)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHH
Confidence 000000 000001121111111111111100000000
Q ss_pred ---------cCCceeeec----CCcc-----ccCCcccccceecccCCCcHHHHHHHHHh---cCCCcEEEEcCCchhHH
Q 011620 288 ---------LHHPLFLTT----GETR-----YKLPERLESYKLICESKLKPLYLVALLQS---LGEEKCIVFTSSVESTH 346 (481)
Q Consensus 288 ---------~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~~lVf~~s~~~~~ 346 (481)
+..|..+.. .... ...+..............|...+..++.. ..+.++|||+++...++
T Consensus 351 ~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~ 430 (644)
T 1z3i_X 351 SSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLD 430 (644)
T ss_dssp HHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHH
Confidence 000000000 0000 00000000000111123344455554443 35789999999999999
Q ss_pred HHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCce---EEEecccccccCCCCCCCEEEEecCCCChhhHHHHH
Q 011620 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ---VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423 (481)
Q Consensus 347 ~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~ 423 (481)
.+...|...+ +.+..+||+++..+|.++++.|++|+.. +|++|.++++|+|++++++||++++||++..+.|++
T Consensus 431 ~l~~~l~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~ 507 (644)
T 1z3i_X 431 LFEKLCRNRR---YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAM 507 (644)
T ss_dssp HHHHHHHHHT---CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHH
T ss_pred HHHHHHHHCC---CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHH
Confidence 9999998877 8899999999999999999999998653 789999999999999999999999999999999999
Q ss_pred hhhhcCCCCCcEEEE
Q 011620 424 GRTARAGQLGRCFTL 438 (481)
Q Consensus 424 GR~~R~~~~g~~i~~ 438 (481)
||++|.|+...+.++
T Consensus 508 gR~~R~Gq~~~v~v~ 522 (644)
T 1z3i_X 508 ARVWRDGQKKTCYIY 522 (644)
T ss_dssp TTSSSTTCCSCEEEE
T ss_pred HhhhhcCCCCceEEE
Confidence 999999987765554
No 55
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.4e-31 Score=275.57 Aligned_cols=331 Identities=20% Similarity=0.185 Sum_probs=216.8
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 128 (481)
.+|||||.++++.++.....+.+.++..+||+|||++++..+...+.... ....+||+|| ..++.||.+++.++++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-~~~~~LIV~P-~sll~qW~~E~~~~~p-- 310 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR-QNGPHIIVVP-LSTMPAWLDTFEKWAP-- 310 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-CCSCEEEECC-TTTHHHHHHHHHHHST--
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-CCCCEEEEEC-chHHHHHHHHHHHHCC--
Confidence 37999999999877644445789999999999999998776655544433 3335999999 6788999999999975
Q ss_pred CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh
Q 011620 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~ 208 (481)
++++..++|................. .........++|+|+||+++...... +....+++||+||||+
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~~---------~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~ 378 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTNP---------RAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHR 378 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSCC--------------CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHhhccc---------cccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhh
Confidence 57788888876655544332110000 00001123578999999999775443 2223588999999999
Q ss_pred hhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCccc-cc---
Q 011620 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK-LA--- 284 (481)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~-~~--- 284 (481)
+..... .....+..+. ....+++||||..+... +.
T Consensus 379 lkn~~s--~~~~~l~~l~---------------------------------------~~~rl~LTgTPiqN~l~el~~ll 417 (800)
T 3mwy_W 379 LKNAES--SLYESLNSFK---------------------------------------VANRMLITGTPLQNNIKELAALV 417 (800)
T ss_dssp GCCSSS--HHHHHHTTSE---------------------------------------EEEEEEECSCCCSSCSHHHHHHH
T ss_pred hcCchh--HHHHHHHHhh---------------------------------------hccEEEeeCCcCCCCHHHHHHHH
Confidence 843221 1111111111 11234444444211000 00
Q ss_pred cc-----------------------------ccCCceeeecCCcc--ccCCcccc-------------------------
Q 011620 285 QL-----------------------------DLHHPLFLTTGETR--YKLPERLE------------------------- 308 (481)
Q Consensus 285 ~~-----------------------------~~~~~~~~~~~~~~--~~~~~~~~------------------------- 308 (481)
.. ..-.+......... ..++....
T Consensus 418 ~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~ 497 (800)
T 3mwy_W 418 NFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSA 497 (800)
T ss_dssp HHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-
T ss_pred HHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 00 00000000000000 00000000
Q ss_pred -------------------------------------------------cceecccCCCcHHHHHHHHHhc--CCCcEEE
Q 011620 309 -------------------------------------------------SYKLICESKLKPLYLVALLQSL--GEEKCIV 337 (481)
Q Consensus 309 -------------------------------------------------~~~~~~~~~~k~~~l~~~l~~~--~~~~~lV 337 (481)
..........|...+..++... .+.++||
T Consensus 498 l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLI 577 (800)
T 3mwy_W 498 LTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLI 577 (800)
T ss_dssp ---------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEE
T ss_pred HhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEE
Confidence 0000011344566666666654 4679999
Q ss_pred EcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCc---eEEEecccccccCCCCCCCEEEEecCCC
Q 011620 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI---QVLVSSDAMTRGMDVEGVNNVVNYDKPA 414 (481)
Q Consensus 338 f~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~vLi~t~~l~~Gidi~~~~~vI~~~~p~ 414 (481)
|+.....++.+.+.|...+ +.+..+||+++..+|.++++.|++++. .+|++|.++++|+|++.+++||++++|+
T Consensus 578 Fsq~~~~ld~L~~~L~~~g---~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~w 654 (800)
T 3mwy_W 578 FSQMVRMLDILGDYLSIKG---INFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDW 654 (800)
T ss_dssp EESCHHHHHHHHHHHHHHT---CCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCS
T ss_pred EechHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCC
Confidence 9999999999999998876 889999999999999999999998654 4899999999999999999999999999
Q ss_pred ChhhHHHHHhhhhcCCCCCcEEEEE
Q 011620 415 YIKTYIHRAGRTARAGQLGRCFTLL 439 (481)
Q Consensus 415 s~~~~~Q~~GR~~R~~~~g~~i~~~ 439 (481)
++..+.|++||++|.|+...+.++.
T Consensus 655 np~~~~Qa~gR~~RiGQ~k~V~Vyr 679 (800)
T 3mwy_W 655 NPQADLQAMARAHRIGQKNHVMVYR 679 (800)
T ss_dssp CSHHHHHHHTTTSCSSCCSCEEEEE
T ss_pred ChhhHHHHHHHHHhcCCCceEEEEE
Confidence 9999999999999999877665543
No 56
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.98 E-value=2.2e-31 Score=239.58 Aligned_cols=215 Identities=27% Similarity=0.405 Sum_probs=181.8
Q ss_pred CCCCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 15 ~~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
...|....+|+++. +++.+.+.+.++||..|+++|.++++.+++ ++++++.+|||+|||++|+++++..+
T Consensus 22 ~~~p~~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l 91 (242)
T 3fe2_A 22 HNCPKPVLNFYEAN------FPANVMDVIARQNFTEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHI 91 (242)
T ss_dssp SCCCCCCSSTTTTT------CCHHHHHHHHTTTCCSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCCccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHH
Confidence 44566777787775 999999999999999999999999999886 89999999999999999999999888
Q ss_pred Hhhc----cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhc
Q 011620 95 SNRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (481)
Q Consensus 95 ~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (481)
.... ..+++++|++|+++|+.|+++.+..+....++.+..++|+......... +.
T Consensus 92 ~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~ 150 (242)
T 3fe2_A 92 NHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD---------------------LE 150 (242)
T ss_dssp HTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH---------------------HH
T ss_pred HhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---------------------hc
Confidence 6532 3467899999999999999999999988889999999998876655433 33
Q ss_pred cCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhh
Q 011620 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250 (481)
Q Consensus 171 ~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
.+++|+|+||+++..++.. ....+.++++||+||||.+.+.++...+..++..++.
T Consensus 151 ~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~----------------------- 206 (242)
T 3fe2_A 151 RGVEICIATPGRLIDFLEC-GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP----------------------- 206 (242)
T ss_dssp HCCSEEEECHHHHHHHHHH-TSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCS-----------------------
T ss_pred CCCCEEEECHHHHHHHHHc-CCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCc-----------------------
Confidence 5679999999999999876 3456889999999999999998888888888776532
Q ss_pred hhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCc
Q 011620 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (481)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~ 299 (481)
..+++++|||+++....+...++.++..+..+..
T Consensus 207 ---------------~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 207 ---------------DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp ---------------SCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred ---------------cceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 2389999999998888888888888887766543
No 57
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=3.3e-31 Score=267.59 Aligned_cols=279 Identities=15% Similarity=0.140 Sum_probs=193.0
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 147 (481)
.+++++++||||||||..+ +..+... ...+|++|+++|+.|+++.+... |+++..++|+......
T Consensus 154 ~rk~vlv~apTGSGKT~~a----l~~l~~~----~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~--- 218 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHA----IQKYFSA----KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ--- 218 (677)
T ss_dssp CCEEEEEECCTTSSHHHHH----HHHHHHS----SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS---
T ss_pred CCCEEEEEcCCCCCHHHHH----HHHHHhc----CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec---
Confidence 3789999999999999843 3333332 24699999999999999998876 7788888887543100
Q ss_pred hhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhccc
Q 011620 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (481)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~ 227 (481)
. -.+..+++++|++.+. ....+++||+||+|.+.+..++..+..++.....
T Consensus 219 ---T-----------------pGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~ 269 (677)
T 3rc3_A 219 ---P-----------------NGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA 269 (677)
T ss_dssp ---T-----------------TCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE
T ss_pred ---C-----------------CCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCc
Confidence 0 0012578888876542 1356799999999999888887777766665531
Q ss_pred CccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCccc
Q 011620 228 DNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL 307 (481)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (481)
...+++++|||.. ....+.... .....+...... .
T Consensus 270 -------------------------------------~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~r~--~---- 304 (677)
T 3rc3_A 270 -------------------------------------EEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYKRL--T---- 304 (677)
T ss_dssp -------------------------------------EEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECCCS--S----
T ss_pred -------------------------------------cceEEEeccchHH-HHHHHHHhc-CCceEEEEeeec--c----
Confidence 2337888888842 222222111 111111111000 0
Q ss_pred ccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhc--CC
Q 011620 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GK 385 (481)
Q Consensus 308 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~ 385 (481)
.......... .+... ..+.+|||++++.++.+++.|.+.+ ..+..+||++++.+|.++++.|++ |+
T Consensus 305 -~l~~~~~~l~-------~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g---~~v~~lHG~L~~~~R~~~~~~F~~~~g~ 372 (677)
T 3rc3_A 305 -PISVLDHALE-------SLDNL-RPGDCIVCFSKNDIYSVSRQIEIRG---LESAVIYGSLPPGTKLAQAKKFNDPNDP 372 (677)
T ss_dssp -CEEECSSCCC-------SGGGC-CTTEEEECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHCTTSS
T ss_pred -hHHHHHHHHH-------HHHhc-CCCCEEEEcCHHHHHHHHHHHHhcC---CCeeeeeccCCHHHHHHHHHHHHccCCC
Confidence 0000000000 01111 3455888999999999999999875 889999999999999999999999 88
Q ss_pred ceEEEecccccccCCCCCCCEEEEecC--------------CCChhhHHHHHhhhhcCCCC---CcEEEEEeCCcchhhh
Q 011620 386 IQVLVSSDAMTRGMDVEGVNNVVNYDK--------------PAYIKTYIHRAGRTARAGQL---GRCFTLLHKDEVCLVG 448 (481)
Q Consensus 386 ~~vLi~t~~l~~Gidi~~~~~vI~~~~--------------p~s~~~~~Q~~GR~~R~~~~---g~~i~~~~~~~~~~~~ 448 (481)
.+|||||+++++|+|+ ++++||+++. |.+..+|.||+||+||.|.. |.|+ ++...+...+.
T Consensus 373 ~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~-~l~~~d~~~~~ 450 (677)
T 3rc3_A 373 CKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVT-TMNHEDLSLLK 450 (677)
T ss_dssp CCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEE-ESSTTHHHHHH
T ss_pred eEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEE-EEecchHHHHH
Confidence 9999999999999999 8999999998 77999999999999999865 3333 33444444444
Q ss_pred h
Q 011620 449 C 449 (481)
Q Consensus 449 ~ 449 (481)
+
T Consensus 451 ~ 451 (677)
T 3rc3_A 451 E 451 (677)
T ss_dssp H
T ss_pred H
Confidence 3
No 58
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.97 E-value=1.6e-30 Score=232.08 Aligned_cols=209 Identities=22% Similarity=0.309 Sum_probs=167.5
Q ss_pred CCCCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 15 ~~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
...|....+|+++. +++.+.+.++++||..|+++|.++++.+.+ ++++++.+|||+|||++|+++++..+
T Consensus 17 ~~~~~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 17 DVLLAEPADFESLL------LSRPVLEGLRAAGFERPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp -------CCGGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 34445556677774 999999999999999999999999999887 89999999999999999999998887
Q ss_pred HhhccCCccEEEEcccHHHHHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCC
Q 011620 95 SNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (481)
Q Consensus 95 ~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (481)
... ..+.+++|++|+++|+.|+++.+..+.... ++++..+.|+......... ..++
T Consensus 87 ~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~ 143 (230)
T 2oxc_A 87 VLE-NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR----------------------LKKC 143 (230)
T ss_dssp CTT-SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH----------------------TTSC
T ss_pred Hhc-CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh----------------------ccCC
Confidence 543 345689999999999999999999997654 7889999988776554322 2457
Q ss_pred cEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHh-HHhHHHHHHHhcccCccccccccccccccccccchhhhh
Q 011620 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 252 (481)
Q Consensus 174 ~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (481)
+|+|+||+++..++.. ..+.+.++++||+||||++.+.+ +...+..++..++.
T Consensus 144 ~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~------------------------- 197 (230)
T 2oxc_A 144 HIAVGSPGRIKQLIEL-DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA------------------------- 197 (230)
T ss_dssp SEEEECHHHHHHHHHT-TSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS-------------------------
T ss_pred CEEEECHHHHHHHHhc-CCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC-------------------------
Confidence 9999999999998876 44667889999999999998876 77777777766542
Q ss_pred ccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeee
Q 011620 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (481)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~ 295 (481)
..+++++|||+++....+...++.+|..+.
T Consensus 198 -------------~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 198 -------------SKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp -------------SCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred -------------CCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 237999999998877777777777776653
No 59
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=234.53 Aligned_cols=199 Identities=32% Similarity=0.503 Sum_probs=169.7
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
++++.+.++++++||..|+++|.++++.+++ ++++++.+|||+|||++|+++++..+... ..+++++|++|+++|
T Consensus 49 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~-~~~~~~lil~Ptr~L 123 (249)
T 3ber_A 49 GVTDVLCEACDQLGWTKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLET-PQRLFALVLTPTREL 123 (249)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHS-CCSSCEEEECSSHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcC-CCCceEEEEeCCHHH
Confidence 3999999999999999999999999999887 89999999999999999999999887764 345679999999999
Q ss_pred HHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc
Q 011620 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
+.|+++.+.++....++.+..++|+......... +..+++|+|+||+++...+.....+
T Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~I~v~Tp~~l~~~l~~~~~~ 182 (249)
T 3ber_A 124 AFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA---------------------LAKKPHIIIATPGRLIDHLENTKGF 182 (249)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHH---------------------HHTCCSEEEECHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhccCCeeEEEEECCCChHHHHHH---------------------hcCCCCEEEECHHHHHHHHHcCCCc
Confidence 9999999999988888999999988765544322 3356799999999999988875556
Q ss_pred ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEe
Q 011620 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (481)
.+.++++||+||||++.+.++...+..++..++. ..+++++|
T Consensus 183 ~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~--------------------------------------~~~~l~~S 224 (249)
T 3ber_A 183 NLRALKYLVMDEADRILNMDFETEVDKILKVIPR--------------------------------------DRKTFLFS 224 (249)
T ss_dssp CCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCS--------------------------------------SSEEEEEE
T ss_pred CccccCEEEEcChhhhhccChHHHHHHHHHhCCC--------------------------------------CCeEEEEe
Confidence 7888999999999999888888888877765532 23899999
Q ss_pred EEEecCcccccccccCCceeeec
Q 011620 274 ATLTQDPNKLAQLDLHHPLFLTT 296 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~~~ 296 (481)
||++.....+...++.+|..+..
T Consensus 225 AT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 225 ATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp SSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccCCHHHHHHHHHHCCCCEEEEe
Confidence 99998888888888888876643
No 60
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=4e-30 Score=230.67 Aligned_cols=209 Identities=29% Similarity=0.465 Sum_probs=172.7
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc
Q 011620 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (481)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~ 98 (481)
....+|++++ +++.+.+.+.++||..|+++|.++++.+++ ++++++.+|||+|||++|+++++..+....
T Consensus 22 ~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~ 91 (236)
T 2pl3_A 22 NEITRFSDFP------LSKKTLKGLQEAQYRLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQ 91 (236)
T ss_dssp GGCSBGGGSC------CCHHHHHHHHHTTCCBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTT
T ss_pred cccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhc
Confidence 3455677774 999999999999999999999999999887 899999999999999999999998876521
Q ss_pred ---cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcE
Q 011620 99 ---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175 (481)
Q Consensus 99 ---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 175 (481)
..+++++|++|+++|+.|+++.+..+....++.+..++|+......... ..+++|
T Consensus 92 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~i 149 (236)
T 2pl3_A 92 WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER----------------------INNINI 149 (236)
T ss_dssp CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH----------------------HTTCSE
T ss_pred ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh----------------------CCCCCE
Confidence 3456899999999999999999999988778999999988765544322 145799
Q ss_pred EEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccc
Q 011620 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (481)
Q Consensus 176 ~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (481)
+|+||+++...+.....+.+.++++||+||||++.+.++...+..++..++.
T Consensus 150 iv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~---------------------------- 201 (236)
T 2pl3_A 150 LVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK---------------------------- 201 (236)
T ss_dssp EEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCT----------------------------
T ss_pred EEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCC----------------------------
Confidence 9999999999887655566788999999999999888888878777776532
Q ss_pred cccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecC
Q 011620 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (481)
Q Consensus 256 ~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~ 297 (481)
..+++++|||++.....+....+.+|..+...
T Consensus 202 ----------~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 202 ----------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp ----------TSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred ----------CCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 23799999999988888888888888776543
No 61
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=2.6e-30 Score=271.80 Aligned_cols=323 Identities=16% Similarity=0.169 Sum_probs=203.5
Q ss_pred CHHHHHHHHHcC-------CCCCchhhHHHHHhhhCCCC----------CCCCEEEECCCCchHHHHhHHHHHHHHHhhc
Q 011620 36 DPRLKVALQNMG-------ISSLFPVQVAVWQETIGPGL----------FERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (481)
Q Consensus 36 ~~~~~~~l~~~~-------~~~~~~~Q~~a~~~~~~~~~----------~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~ 98 (481)
++.+++.+..+- ...|||+|.+|++.+++.+. .+++++++++||||||+++ ++++..+.. .
T Consensus 250 ~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-~ 327 (1038)
T 2w00_A 250 KHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-L 327 (1038)
T ss_dssp HHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-C
T ss_pred hHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-c
Confidence 455666666642 23599999999998876322 2368999999999999997 445554432 2
Q ss_pred cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhh-ccCCcEEE
Q 011620 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILV 177 (481)
Q Consensus 99 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~I~v 177 (481)
....++||+||+++|+.|+.+.+..+... .+.++....... ..+ ..+++|+|
T Consensus 328 ~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~---------------------~~L~~~~~~IiV 380 (1038)
T 2w00_A 328 DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLK---------------------RNLDKDDNKIIV 380 (1038)
T ss_dssp TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHH---------------------HHHHCSSCCEEE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHH---------------------HHhcCCCCCEEE
Confidence 23358999999999999999999988642 112222222221 112 13579999
Q ss_pred eCChhHHHhhhcCCCc-ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhcccc
Q 011620 178 ATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (481)
Q Consensus 178 ~T~~~l~~~l~~~~~~-~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (481)
+||++|...+.....+ .+..+.+||+||||++....+ ...+...+
T Consensus 381 tTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~---~~~I~~~~------------------------------- 426 (1038)
T 2w00_A 381 TTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEA---QKNLKKKF------------------------------- 426 (1038)
T ss_dssp EEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHH---HHHHHHHC-------------------------------
T ss_pred EEHHHHHHHHhcccchhccccccEEEEEccchhcchHH---HHHHHHhC-------------------------------
Confidence 9999999887653222 355788999999999765433 23333333
Q ss_pred ccCCCCCCcceeeEEEeEEEecCcc----cccccccCC-----------------ceeeecCCccccC-----C-c--c-
Q 011620 257 RGFKDKPYPRLVKMVLSATLTQDPN----KLAQLDLHH-----------------PLFLTTGETRYKL-----P-E--R- 306 (481)
Q Consensus 257 ~~~~~~~~~~~~~i~~Sat~~~~~~----~~~~~~~~~-----------------~~~~~~~~~~~~~-----~-~--~- 306 (481)
+..+.+++||||..... ......... |..+......... . . .
T Consensus 427 --------p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~ 498 (1038)
T 2w00_A 427 --------KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKL 498 (1038)
T ss_dssp --------SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHH
T ss_pred --------CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHH
Confidence 22378999999874321 000000011 1111000000000 0 0 0
Q ss_pred --cccceecccCCCcHHHHHH-HHH---hc--------CCCcEEEEcCCchhHHHHHHHHhhcCC---------cceEE-
Q 011620 307 --LESYKLICESKLKPLYLVA-LLQ---SL--------GEEKCIVFTSSVESTHRLCTLLNHFGE---------LRIKI- 362 (481)
Q Consensus 307 --~~~~~~~~~~~~k~~~l~~-~l~---~~--------~~~~~lVf~~s~~~~~~l~~~l~~~~~---------~~~~~- 362 (481)
...... .....+...+.. ++. .. .+.++||||+|+..|..+++.|.+.+. .+.++
T Consensus 499 ~~i~~~~~-l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~a 577 (1038)
T 2w00_A 499 SAAENQQA-FLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIA 577 (1038)
T ss_dssp HHTCSTTT-TTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEE
T ss_pred HHHHHHHH-hcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEE
Confidence 000000 011112222222 222 11 245899999999999999999987641 11344
Q ss_pred EEccCc----------c----------Ch-----------------------------HHHHHHHHHHhcCCceEEEecc
Q 011620 363 KEYSGL----------Q----------RQ-----------------------------SVRSKTLKAFREGKIQVLVSSD 393 (481)
Q Consensus 363 ~~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~vLi~t~ 393 (481)
..+|++ + +. .+|..++++|++|+.+|||+|+
T Consensus 578 vv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd 657 (1038)
T 2w00_A 578 TIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVG 657 (1038)
T ss_dssp EECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESS
T ss_pred EEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcc
Confidence 344532 1 11 1478899999999999999999
Q ss_pred cccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCC
Q 011620 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431 (481)
Q Consensus 394 ~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~ 431 (481)
++.+|+|+|.+ +++.++.|.+...|+|++||++|.+.
T Consensus 658 ~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~ 694 (1038)
T 2w00_A 658 MFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYD 694 (1038)
T ss_dssp TTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCC
T ss_pred hHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCC
Confidence 99999999999 67788999999999999999999764
No 62
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=5.3e-30 Score=225.04 Aligned_cols=195 Identities=26% Similarity=0.469 Sum_probs=164.5
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
+++++++.+.++||..|+++|.++++.+.+ ++++++.+|||+|||++|+++++..+... ..+++++|++|+++|+
T Consensus 10 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~~~~~~lil~Pt~~L~ 84 (206)
T 1vec_A 10 LKRELLMGIFEMGWEKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLK-KDNIQAMVIVPTRELA 84 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTT-SCSCCEEEECSCHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhccc-CCCeeEEEEeCcHHHH
Confidence 999999999999999999999999999887 89999999999999999999999877543 3456899999999999
Q ss_pred HHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCc
Q 011620 115 LQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (481)
Q Consensus 115 ~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 193 (481)
.|+++.+..+.... ++.+....|+....+.... +..+++|+|+||+++...+.. ...
T Consensus 85 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~i~v~T~~~l~~~~~~-~~~ 142 (206)
T 1vec_A 85 LQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---------------------LDDTVHVVIATPGRILDLIKK-GVA 142 (206)
T ss_dssp HHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---------------------TTSCCSEEEECHHHHHHHHHT-TCS
T ss_pred HHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---------------------cCCCCCEEEeCHHHHHHHHHc-CCc
Confidence 99999999998766 7888889888776554332 335679999999999998876 345
Q ss_pred ccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEEe
Q 011620 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (481)
Q Consensus 194 ~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (481)
.+.++++||+||||.+.+.++...+..++..++. ..+++++|
T Consensus 143 ~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~--------------------------------------~~~~l~~S 184 (206)
T 1vec_A 143 KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK--------------------------------------NRQILLYS 184 (206)
T ss_dssp CCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCT--------------------------------------TCEEEEEE
T ss_pred CcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCc--------------------------------------cceEEEEE
Confidence 6788999999999999888888888877776532 23899999
Q ss_pred EEEecCcccccccccCCceee
Q 011620 274 ATLTQDPNKLAQLDLHHPLFL 294 (481)
Q Consensus 274 at~~~~~~~~~~~~~~~~~~~ 294 (481)
||++.....+...++.+|..+
T Consensus 185 AT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 185 ATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp SCCCHHHHHHHHHHCSSCEEE
T ss_pred eeCCHHHHHHHHHHcCCCeEe
Confidence 999888888777777777654
No 63
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=234.81 Aligned_cols=205 Identities=32% Similarity=0.512 Sum_probs=169.0
Q ss_pred cccCCCCCC-CCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc---c
Q 011620 24 FEDCPLDHL-PCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---V 99 (481)
Q Consensus 24 ~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~---~ 99 (481)
++...++++ ..+++.+++.+.++||..|+++|.++++.++. ++++++++|||+|||++|+++++..+.... .
T Consensus 49 ~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~ 124 (262)
T 3ly5_A 49 FEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPR 124 (262)
T ss_dssp SGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred cccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhcccccc
Confidence 344444444 24899999999999999999999999999887 789999999999999999999998876532 2
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeC
Q 011620 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T 179 (481)
.+.+++|++|+++|+.|+++.+.++....+..+..+.|+......... +..+++|+|+|
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~Iiv~T 183 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---------------------LGNGINIIVAT 183 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---------------------HHHCCSEEEEC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---------------------hcCCCCEEEEc
Confidence 456799999999999999999999998888999999998776555332 33457999999
Q ss_pred ChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccC
Q 011620 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGF 259 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (481)
|+++...+.....+.+.++++||+||||++.+.++...+..++..++.
T Consensus 184 p~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~-------------------------------- 231 (262)
T 3ly5_A 184 PGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT-------------------------------- 231 (262)
T ss_dssp HHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCS--------------------------------
T ss_pred HHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCC--------------------------------
Confidence 999999888766567889999999999999998888888888877642
Q ss_pred CCCCCcceeeEEEeEEEecCcccccccccCCc
Q 011620 260 KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291 (481)
Q Consensus 260 ~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~ 291 (481)
..+++++|||+++....+....+..+
T Consensus 232 ------~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 232 ------RRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp ------SSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred ------CCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 23899999999988888877666544
No 64
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=1.6e-29 Score=224.30 Aligned_cols=197 Identities=24% Similarity=0.366 Sum_probs=162.7
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
++++.+.+.+.++||..|+++|.++++.+++ ++++++.+|||+|||++++++++..+... ..+.+++|++|+++|
T Consensus 20 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil~Pt~~L 94 (220)
T 1t6n_A 20 LLKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV-TGQVSVLVMCHTREL 94 (220)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCC-TTCCCEEEECSCHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhcc-CCCEEEEEEeCCHHH
Confidence 3999999999999999999999999999987 78999999999999999999999876543 234589999999999
Q ss_pred HHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCC
Q 011620 114 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~ 192 (481)
+.|+++.+.++.... ++++..++|+.........+. ...++|+|+||+++...+.. ..
T Consensus 95 ~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--------------------~~~~~i~v~T~~~l~~~~~~-~~ 153 (220)
T 1t6n_A 95 AFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK--------------------KNCPHIVVGTPGRILALARN-KS 153 (220)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH--------------------HSCCSEEEECHHHHHHHHHT-TS
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh--------------------cCCCCEEEeCHHHHHHHHHh-CC
Confidence 999999999998765 789999999877655533321 13469999999999998876 44
Q ss_pred cccCCccEEEEecchhhhh-HhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEE
Q 011620 193 FTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (481)
Q Consensus 193 ~~~~~~~~iViDE~H~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (481)
+.+.++++||+||||++.+ .++...+..++.... ...++++
T Consensus 154 ~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~ 195 (220)
T 1t6n_A 154 LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP--------------------------------------HEKQVMM 195 (220)
T ss_dssp SCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC--------------------------------------SSSEEEE
T ss_pred CCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC--------------------------------------CcCeEEE
Confidence 6688899999999999876 566666666665443 1238999
Q ss_pred EeEEEecCcccccccccCCceee
Q 011620 272 LSATLTQDPNKLAQLDLHHPLFL 294 (481)
Q Consensus 272 ~Sat~~~~~~~~~~~~~~~~~~~ 294 (481)
+|||++.....+...++.+|..+
T Consensus 196 ~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 196 FSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp EESCCCTTTHHHHHTTCSSCEEE
T ss_pred EEeecCHHHHHHHHHHcCCCeEE
Confidence 99999988888888888887655
No 65
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.97 E-value=3.2e-30 Score=231.09 Aligned_cols=210 Identities=26% Similarity=0.398 Sum_probs=165.4
Q ss_pred CCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHh
Q 011620 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (481)
Q Consensus 17 ~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~ 96 (481)
.|....+|+++. +++.+.+++.++||..|+++|.++++.+++ ++++++.+|||+|||++|+++++..+..
T Consensus 25 ~~~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~ 94 (237)
T 3bor_A 25 WNEIVDNFDDMN------LKESLLRGIYAYGFEKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEI 94 (237)
T ss_dssp --CCCCSGGGSC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCT
T ss_pred CCCccCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 344556677774 999999999999999999999999999887 8899999999999999999999988754
Q ss_pred hccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEE
Q 011620 97 RAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (481)
Q Consensus 97 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 176 (481)
. ..+.+++|++|+++|+.|+++.+..++...++.+....|+.........+ ....++|+
T Consensus 95 ~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l--------------------~~~~~~Il 153 (237)
T 3bor_A 95 E-FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKL--------------------QAEAPHIV 153 (237)
T ss_dssp T-SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC---------------------------------CCCSEE
T ss_pred c-CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHH--------------------hcCCCCEE
Confidence 3 24568999999999999999999999887788888888876654432221 11337999
Q ss_pred EeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhcccc
Q 011620 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (481)
Q Consensus 177 v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (481)
|+||+++...+.. ..+.+..+++||+||||.+.+.++...+..++...+
T Consensus 154 v~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------------ 202 (237)
T 3bor_A 154 VGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLN------------------------------ 202 (237)
T ss_dssp EECHHHHHHHHHT-TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSC------------------------------
T ss_pred EECHHHHHHHHHh-CCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCC------------------------------
Confidence 9999999998876 445678899999999999988888777777776553
Q ss_pred ccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeec
Q 011620 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (481)
Q Consensus 257 ~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~ 296 (481)
...+++++|||+++....+...++.+|..+..
T Consensus 203 --------~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 203 --------TSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp --------TTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred --------CCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 22389999999998888888888888776643
No 66
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.97 E-value=4.4e-30 Score=229.15 Aligned_cols=209 Identities=30% Similarity=0.425 Sum_probs=167.1
Q ss_pred CCCCcccccccc-CCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHH
Q 011620 15 MRSPVDVSLFED-CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (481)
Q Consensus 15 ~~~p~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~ 93 (481)
...|....+|++ + ++++.+.+++.++||.+|+++|.++++.+++ ++++++.+|||+|||++|+++++..
T Consensus 12 ~~~p~p~~~f~~~~------~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~ 81 (228)
T 3iuy_A 12 RLIPKPTCRFKDAF------QQYPDLLKSIIRVGILKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIH 81 (228)
T ss_dssp CCCCCCCCSHHHHH------TTCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcCCCChhhHhhhh------ccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHH
Confidence 344555666666 4 4999999999999999999999999999887 8999999999999999999999887
Q ss_pred HHhh-----ccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHh
Q 011620 94 LSNR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE 168 (481)
Q Consensus 94 l~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (481)
+... ...+++++|++|+++|+.|+++.+..+.. .++.+..++|+........ .
T Consensus 82 l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------------~ 139 (228)
T 3iuy_A 82 LDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY-KGLKSICIYGGRNRNGQIE---------------------D 139 (228)
T ss_dssp HC---------CCCSEEEECSSHHHHHHHHHHHHHHCC-TTCCEEEECC------CHH---------------------H
T ss_pred HHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcc-cCceEEEEECCCChHHHHH---------------------H
Confidence 6542 13567899999999999999999999863 4788888888765443322 2
Q ss_pred hccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccch
Q 011620 169 LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 248 (481)
Q Consensus 169 ~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (481)
+.++++|+|+||+++...+.. ..+.+.++++||+||||++.+.++...+..++.....
T Consensus 140 ~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~--------------------- 197 (228)
T 3iuy_A 140 ISKGVDIIIATPGRLNDLQMN-NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRP--------------------- 197 (228)
T ss_dssp HHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCS---------------------
T ss_pred hcCCCCEEEECHHHHHHHHHc-CCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCc---------------------
Confidence 345689999999999998876 4466888999999999999988888888888776642
Q ss_pred hhhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceee
Q 011620 249 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFL 294 (481)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~ 294 (481)
..+++++|||+++....+....+.+|..+
T Consensus 198 -----------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 226 (228)
T 3iuy_A 198 -----------------DRQTVMTSATWPDTVRQLALSYLKDPMIV 226 (228)
T ss_dssp -----------------SCEEEEEESCCCHHHHHHHHTTCSSCEEE
T ss_pred -----------------CCeEEEEEeeCCHHHHHHHHHHCCCCEEE
Confidence 23899999999988888888888887765
No 67
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.97 E-value=4.6e-30 Score=237.32 Aligned_cols=198 Identities=21% Similarity=0.293 Sum_probs=165.4
Q ss_pred CCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
++++.+++.+.++||..|+++|.++++.++.. .++++++.+|||||||++|++|++..+... ..++++||++||++|
T Consensus 98 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-~~~~~~lil~PtreL 174 (300)
T 3fmo_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-NKYPQCLCLSPTYEL 174 (300)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhcc-CCCceEEEEcCcHHH
Confidence 39999999999999999999999999998861 128999999999999999999999988654 346689999999999
Q ss_pred HHHHHHHHHHhcccc-CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCC
Q 011620 114 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (481)
Q Consensus 114 ~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~ 192 (481)
+.|+++.+..+.... ++.+....++...... ...+++|+|+||+++..++.+.+.
T Consensus 175 a~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~IlV~TP~~l~~~l~~~~~ 230 (300)
T 3fmo_B 175 ALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGTPGTVLDWCSKLKF 230 (300)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT------------------------CCCCCSEEEECHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh------------------------hcCCCCEEEECHHHHHHHHHhcCC
Confidence 999999999998754 6788888877653321 124579999999999999977566
Q ss_pred cccCCccEEEEecchhhhh-HhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEE
Q 011620 193 FTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (481)
Q Consensus 193 ~~~~~~~~iViDE~H~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (481)
+.+.++++||+||||.+.+ .++...+..+...++ ...|+++
T Consensus 231 ~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~--------------------------------------~~~q~i~ 272 (300)
T 3fmo_B 231 IDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------------------------------------RNCQMLL 272 (300)
T ss_dssp CCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC--------------------------------------TTCEEEE
T ss_pred CChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC--------------------------------------CCCEEEE
Confidence 7788999999999999987 677777777766553 2238999
Q ss_pred EeEEEecCcccccccccCCceeeec
Q 011620 272 LSATLTQDPNKLAQLDLHHPLFLTT 296 (481)
Q Consensus 272 ~Sat~~~~~~~~~~~~~~~~~~~~~ 296 (481)
+|||++.....+...++.+|..+..
T Consensus 273 ~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 273 FSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp EESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred EeccCCHHHHHHHHHHCCCCeEEEe
Confidence 9999999999999999998887654
No 68
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.97 E-value=4.2e-30 Score=233.04 Aligned_cols=214 Identities=27% Similarity=0.435 Sum_probs=174.8
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc-
Q 011620 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA- 98 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~- 98 (481)
...+|+++. +++.+++++.++||..|+++|.++++.+++ ++++++.+|||+|||++|+++++..+....
T Consensus 21 ~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~ 90 (253)
T 1wrb_A 21 VIENFDELK------LDPTIRNNILLASYQRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDL 90 (253)
T ss_dssp CCCSSGGGS------CCCSTTTTTTTTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ccCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhcc
Confidence 455676664 899999999999999999999999999987 899999999999999999999998876532
Q ss_pred -------cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhcc
Q 011620 99 -------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (481)
Q Consensus 99 -------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (481)
..+++++|++|+++|+.|+++.+..+....++.+..+.|+......... +..
T Consensus 91 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~ 149 (253)
T 1wrb_A 91 NQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---------------------VQM 149 (253)
T ss_dssp ------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---------------------HSS
T ss_pred ccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---------------------hCC
Confidence 2346899999999999999999999988778889888888776554332 345
Q ss_pred CCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhh
Q 011620 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (481)
Q Consensus 172 ~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
+++|+|+||+++...+... .+.+.++++||+||||++.+.++...+..++........
T Consensus 150 ~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~--------------------- 207 (253)
T 1wrb_A 150 GCHLLVATPGRLVDFIEKN-KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSG--------------------- 207 (253)
T ss_dssp CCSEEEECHHHHHHHHHTT-SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCG---------------------
T ss_pred CCCEEEECHHHHHHHHHcC-CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCC---------------------
Confidence 6799999999999998873 466788999999999999988888888888775422110
Q ss_pred hccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCc
Q 011620 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (481)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~ 299 (481)
...+++++|||+++....+...++.++..+..+..
T Consensus 208 -------------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 208 -------------INRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp -------------GGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred -------------CCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 13389999999998888888888888877765544
No 69
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.8e-30 Score=233.08 Aligned_cols=223 Identities=26% Similarity=0.458 Sum_probs=174.0
Q ss_pred CCCCCccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHH
Q 011620 14 WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQT 93 (481)
Q Consensus 14 ~~~~p~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~ 93 (481)
....|....+|+++. ++ .++++.+.+.+.++||..|+++|.++++.+++ ++++++.+|||+|||++|+++++..
T Consensus 17 ~~~~p~~~~~f~~l~-~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~ 90 (245)
T 3dkp_A 17 GTDLPDPIATFQQLD-QE-YKINSRLLQNILDAGFQMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQ 90 (245)
T ss_dssp SSSCCCCCSSHHHHH-HH-HCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCcccCHHHhh-hc-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHH
Confidence 344566666777651 11 13999999999999999999999999999887 8999999999999999999999988
Q ss_pred HHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCC
Q 011620 94 LSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (481)
Q Consensus 94 l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (481)
+......+++++|++|+++|+.|+++.+..+....++.+..+.++........ .....++
T Consensus 91 l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 150 (245)
T 3dkp_A 91 LKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG--------------------PKSSKKF 150 (245)
T ss_dssp HCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTS--------------------TTSCCCC
T ss_pred HhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhh--------------------hhhcCCC
Confidence 87655567789999999999999999999998887888877766543221100 1123567
Q ss_pred cEEEeCChhHHHhhhcCC-CcccCCccEEEEecchhhhhH---hHHhHHHHHHHhcccCccccccccccccccccccchh
Q 011620 174 DILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE---AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (481)
Q Consensus 174 ~I~v~T~~~l~~~l~~~~-~~~~~~~~~iViDE~H~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (481)
+|+|+||+++..++.... .+.+.++++||+||||.+.+. ++...+..++.....
T Consensus 151 ~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~---------------------- 208 (245)
T 3dkp_A 151 DILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS---------------------- 208 (245)
T ss_dssp CEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC----------------------
T ss_pred CEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC----------------------
Confidence 999999999999987643 456888999999999999884 455555555443321
Q ss_pred hhhccccccCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCc
Q 011620 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (481)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~ 299 (481)
...+++++|||++.....+....+.++..+..+..
T Consensus 209 ---------------~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 209 ---------------HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp ---------------TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred ---------------CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 22388999999998888898888888887766543
No 70
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.97 E-value=6.2e-30 Score=226.58 Aligned_cols=205 Identities=23% Similarity=0.358 Sum_probs=167.9
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCc
Q 011620 23 LFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102 (481)
Q Consensus 23 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~ 102 (481)
+|+++. +++.+.++++++||..|+++|.++++.+++ ++++++.+|||+|||++|+++++..+... ..+.
T Consensus 5 ~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-~~~~ 73 (219)
T 1q0u_A 5 QFTRFP------FQPFIIEAIKTLRFYKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPE-RAEV 73 (219)
T ss_dssp CGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTT-SCSC
T ss_pred CHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhC-cCCc
Confidence 455553 999999999999999999999999999887 89999999999999999999999887643 3456
Q ss_pred cEEEEcccHHHHHHHHHHHHHhcccc----CceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEe
Q 011620 103 RALVVLPTRDLALQVKDVFAAIAPAV----GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (481)
Q Consensus 103 ~~lil~P~~~L~~q~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~ 178 (481)
+++|++|+++|+.|+++.+.++.... ++.+..+.|+....... +.+..+++|+|+
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------------~~~~~~~~Iiv~ 132 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---------------------EKLNVQPHIVIG 132 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---------------------CCCSSCCSEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---------------------HHcCCCCCEEEe
Confidence 89999999999999999999987765 67888888876543321 112346799999
Q ss_pred CChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhcccccc
Q 011620 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (481)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (481)
||+++...+.. ..+.+.++++||+||||.+.+.++...+..++..++.
T Consensus 133 Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~------------------------------- 180 (219)
T 1q0u_A 133 TPGRINDFIRE-QALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPK------------------------------- 180 (219)
T ss_dssp CHHHHHHHHHT-TCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCT-------------------------------
T ss_pred CHHHHHHHHHc-CCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCc-------------------------------
Confidence 99999998876 4466788999999999999888887777777765531
Q ss_pred CCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCC
Q 011620 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (481)
Q Consensus 259 ~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~ 298 (481)
..+++++|||++.....+....+.+|..+....
T Consensus 181 -------~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 181 -------DLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp -------TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred -------ccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 238999999999888888888888888765543
No 71
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=1e-29 Score=226.26 Aligned_cols=208 Identities=25% Similarity=0.418 Sum_probs=166.4
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc
Q 011620 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (481)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~ 98 (481)
....+|+++. +++.+.+.+.++||..|+++|.++++.+++ ++++++.+|||+|||++|+++++..+...
T Consensus 11 ~~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~- 79 (224)
T 1qde_A 11 KVVYKFDDME------LDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTS- 79 (224)
T ss_dssp CCCCCGGGGT------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTT-
T ss_pred cccCChhhcC------CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhcc-
Confidence 3455677775 999999999999999999999999999887 88999999999999999999999887554
Q ss_pred cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEe
Q 011620 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (481)
Q Consensus 99 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~ 178 (481)
..+++++|++|+++|+.|+++.+..+....++.+..+.|+......... ...++|+|+
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~iiv~ 137 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG----------------------LRDAQIVVG 137 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC--------------------------------CTTCSEEEE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc----------------------CCCCCEEEE
Confidence 3456899999999999999999999988888999998888765443221 123799999
Q ss_pred CChhHHHhhhcCCCcccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhcccccc
Q 011620 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (481)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (481)
||+++...+.. ....+.++++||+||||.+.+.++...+..++...+.
T Consensus 138 Tp~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~------------------------------- 185 (224)
T 1qde_A 138 TPGRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP------------------------------- 185 (224)
T ss_dssp CHHHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT-------------------------------
T ss_pred CHHHHHHHHHh-CCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCc-------------------------------
Confidence 99999998876 3466788999999999999888888777777766532
Q ss_pred CCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCC
Q 011620 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (481)
Q Consensus 259 ~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~ 298 (481)
..+++++|||+++....+...++.+|..+....
T Consensus 186 -------~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 186 -------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp -------TCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred -------cCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 238999999999888888888888887765443
No 72
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.96 E-value=5.2e-29 Score=218.87 Aligned_cols=195 Identities=33% Similarity=0.488 Sum_probs=161.8
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhh--ccCCccEEEEcccHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTRD 112 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~--~~~~~~~lil~P~~~ 112 (481)
+++.+.+.+.++||..|+++|.++++.+.+ ++++++.+|||+|||++++++++..+... ...+++++|++|+++
T Consensus 8 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~ 83 (207)
T 2gxq_A 8 LKPEILEALHGRGLTTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRE 83 (207)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHH
Confidence 999999999999999999999999999887 89999999999999999999999887542 124568999999999
Q ss_pred HHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCC
Q 011620 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (481)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~ 192 (481)
|+.|+++.+..+... +++..++|+......... +..+++|+|+||+++...+.. ..
T Consensus 84 L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------------------~~~~~~i~v~T~~~l~~~~~~-~~ 139 (207)
T 2gxq_A 84 LALQVASELTAVAPH--LKVVAVYGGTGYGKQKEA---------------------LLRGADAVVATPGRALDYLRQ-GV 139 (207)
T ss_dssp HHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHH---------------------HHHCCSEEEECHHHHHHHHHH-TS
T ss_pred HHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHH---------------------hhCCCCEEEECHHHHHHHHHc-CC
Confidence 999999999999764 677888887765444322 335679999999999998876 44
Q ss_pred cccCCccEEEEecchhhhhHhHHhHHHHHHHhcccCccccccccccccccccccchhhhhccccccCCCCCCcceeeEEE
Q 011620 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (481)
Q Consensus 193 ~~~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (481)
+.+.++++||+||||.+.+.++...+..++...+. ..+++++
T Consensus 140 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~--------------------------------------~~~~i~~ 181 (207)
T 2gxq_A 140 LDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPP--------------------------------------SRQTLLF 181 (207)
T ss_dssp SCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCT--------------------------------------TSEEEEE
T ss_pred cchhhceEEEEEChhHhhccchHHHHHHHHHhCCc--------------------------------------cCeEEEE
Confidence 66888999999999999888888777777765431 2389999
Q ss_pred eEEEecCcccccccccCCceeee
Q 011620 273 SATLTQDPNKLAQLDLHHPLFLT 295 (481)
Q Consensus 273 Sat~~~~~~~~~~~~~~~~~~~~ 295 (481)
|||+++....+...++.+|..+.
T Consensus 182 SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 182 SATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp CSSCCHHHHHHHHHHCSSCEEEE
T ss_pred EEecCHHHHHHHHHHcCCCeEEE
Confidence 99998888888888888877654
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.96 E-value=6.7e-28 Score=236.60 Aligned_cols=375 Identities=18% Similarity=0.154 Sum_probs=226.2
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.|+ .|++.|.-..-.+.+ |+ |.++.||+|||+++.+|+.-.... |..+.|++|+..|+.|-++++..+.
T Consensus 72 lg~-r~~dvQligg~~L~~----G~--iaEM~TGEGKTLva~lp~~lnAL~----G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHE----GK--VAEMKTGEGKTLAATMPIYLNALI----GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHT----TC--EEECCTTSCHHHHTHHHHHHHHTT----SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhC----CC--hhhccCCCCccHHHHHHHHHHHhc----CCceEEEeccHHHHHhHHHHHHHHH
Confidence 465 688888766544332 44 999999999999999998644333 3469999999999999999999999
Q ss_pred cccCceEEEeecCCc-------hHHHHHHhhhcCccccCc----------------------cCCchhHHHhhccCCcEE
Q 011620 126 PAVGLSVGLAVGQSS-------IADEISELIKRPKLEAGI----------------------CYDPEDVLQELQSAVDIL 176 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~I~ 176 (481)
..+|++|+++.+... ..+.........-...+. ...+.. +.-...++|.
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY~~DIt 218 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAYLCDVT 218 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHHHSSEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHhcCCCE
Confidence 999999999987310 000000000000000000 000111 1122347999
Q ss_pred EeCChhHH-Hhhhc-----CCCcccCCccEEEEecchhhhhH----------------hHHhHHHHHHHhcccCc-----
Q 011620 177 VATPGRLM-DHINA-----TRGFTLEHLCYLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDN----- 229 (481)
Q Consensus 177 v~T~~~l~-~~l~~-----~~~~~~~~~~~iViDE~H~~~~~----------------~~~~~~~~i~~~~~~~~----- 229 (481)
.+|..-|- +.|.. ........+.+.||||+|.++-+ .....+..+...+....
T Consensus 219 YgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 298 (822)
T 3jux_A 219 YGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVD 298 (822)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEEC
T ss_pred EccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 99987652 22221 11223567889999999964321 11111111211111000
Q ss_pred ----------------------ccccccccccccccccc-ch---hhhhc----------cc-----cc-----------
Q 011620 230 ----------------------ENRFSDASTFLPSAFGS-LK---TIRRC----------GV-----ER----------- 257 (481)
Q Consensus 230 ----------------------~~~~~~~~~~~~~~~~~-~~---~~~~~----------~~-----~~----------- 257 (481)
.+.++.....+..+... +. ..... -+ .+
T Consensus 299 ek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 378 (822)
T 3jux_A 299 EKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGL 378 (822)
T ss_dssp CSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGH
T ss_pred cccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHH
Confidence 00000000000000000 00 00000 00 00
Q ss_pred ------------------------cCCCCCCcceeeEEEeEEEecCcccccccccCCceeeecCCccccCCcccccceec
Q 011620 258 ------------------------GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI 313 (481)
Q Consensus 258 ------------------------~~~~~~~~~~~~i~~Sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (481)
..+...| .++.+||+|.......+...+... ++.. ....+...... .....
T Consensus 379 HQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y--~kL~GMTGTa~te~~Ef~~iY~l~-vv~I-Ptnkp~~R~d~-~d~vy 453 (822)
T 3jux_A 379 HQAIEAKEGVPIKEESITYATITFQNYFRMY--EKLAGMTGTAKTEESEFVQVYGME-VVVI-PTHKPMIRKDH-DDLVF 453 (822)
T ss_dssp HHHHHHHHSSCCCCCCCEEEEECHHHHHTTS--SEEEEEESSCGGGHHHHHHHSCCC-EEEC-CCSSCCCCEEC-CCEEE
T ss_pred HHHHHHHcCCCCCCCcchhHHHHHHHHHHHh--hHHeEECCCCchHHHHHHHHhCCe-EEEE-CCCCCcceeec-CcEEE
Confidence 0001111 147789999876555554443222 2222 22221111111 12233
Q ss_pred ccCCCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEe
Q 011620 314 CESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391 (481)
Q Consensus 314 ~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~ 391 (481)
.....|...+...+... .+.++||||+|++.++.+++.|.+.+ +++..+||+....++..+...++.| .|+||
T Consensus 454 ~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~G---i~~~vLhgkq~~rE~~ii~~ag~~g--~VtVA 528 (822)
T 3jux_A 454 RTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKG---IPHQVLNAKYHEKEAEIVAKAGQKG--MVTIA 528 (822)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTT---CCCEEECSCHHHHHHHHHHHHHSTT--CEEEE
T ss_pred ecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEeeCCchHHHHHHHHhCCCCC--eEEEE
Confidence 45556777777777643 46799999999999999999999877 8889999996666665566666555 69999
Q ss_pred cccccccCCCC--------CCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCc
Q 011620 392 SDAMTRGMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (481)
Q Consensus 392 t~~l~~Gidi~--------~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~ 443 (481)
|+++++|+|++ +..+||+++.|.|...|.||+||+||.|.+|.++.|++..|
T Consensus 529 TdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 529 TNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp ETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred cchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 99999999998 56799999999999999999999999999999999999887
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.94 E-value=5.1e-25 Score=224.35 Aligned_cols=131 Identities=19% Similarity=0.266 Sum_probs=113.9
Q ss_pred cHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEeccccc
Q 011620 319 KPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (481)
Q Consensus 319 k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~ 396 (481)
+...+...+... .+.++||||++...++.+++.|.+.+ +.+..+|++++..+|.++++.|++|+.+|||||+.++
T Consensus 424 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~ 500 (664)
T 1c4o_A 424 QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHG---IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLR 500 (664)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCC
T ss_pred hHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcC---CCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhh
Confidence 444444444432 56799999999999999999999887 7889999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEecC-----CCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhccc
Q 011620 397 RGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPL 453 (481)
Q Consensus 397 ~Gidi~~~~~vI~~~~-----p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~ 453 (481)
+|+|+|++++||+++. |.|...|+||+||+||.+ .|.+++|+++.+......+.+.
T Consensus 501 ~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~ 561 (664)
T 1c4o_A 501 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEET 561 (664)
T ss_dssp TTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHHH
T ss_pred cCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHHH
Confidence 9999999999999997 889999999999999984 8999999998877665555443
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=1e-23 Score=214.66 Aligned_cols=129 Identities=23% Similarity=0.300 Sum_probs=112.6
Q ss_pred cHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEeccccc
Q 011620 319 KPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (481)
Q Consensus 319 k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~ 396 (481)
+...+...+... .+.++||||++...++.+++.|.+.+ +.+..+||+++..+|..+++.|++|+.+|||||+.++
T Consensus 430 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~ 506 (661)
T 2d7d_A 430 QIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIG---IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 506 (661)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCS
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcC---CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhh
Confidence 344444444432 46799999999999999999999886 7889999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEecC-----CCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhc
Q 011620 397 RGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLT 451 (481)
Q Consensus 397 ~Gidi~~~~~vI~~~~-----p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~ 451 (481)
+|+|+|++++||+++. |.+...|+||+||+||. ..|.+++|+++.+......+.
T Consensus 507 ~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 507 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp TTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred CCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 9999999999999997 89999999999999998 689999999987765555443
No 76
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.93 E-value=1.5e-25 Score=223.92 Aligned_cols=152 Identities=19% Similarity=0.169 Sum_probs=92.2
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
.|| +|||+|.+++..+.+.+..++++++++|||+|||++|++|++.. +.+++|++||++|+.|+.+++..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------~~~~~~~~~t~~l~~q~~~~~~~l- 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------KKKVLIFTRTHSQLDSIYKNAKLL- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------TCEEEEEESCHHHHHHHHHHHGGG-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------CCcEEEEcCCHHHHHHHHHHHHhc-
Confidence 467 89999999988777666678999999999999999999998642 347999999999999999888764
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcC--------------------------ccccCccCCchhHHHhhccCCcEEEeC
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRP--------------------------KLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~I~v~T 179 (481)
++++..+.|.......-....... ........++....+.....++|+|+|
T Consensus 75 ---~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n 151 (540)
T 2vl7_A 75 ---GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMT 151 (540)
T ss_dssp ---TCCEEEC---------------------------------------------------------CTTGGGCSEEEEE
T ss_pred ---CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEC
Confidence 566666665442110000000000 000000111122223344568999999
Q ss_pred ChhHHHhhhcCCCc------ccCCccEEEEecchhh
Q 011620 180 PGRLMDHINATRGF------TLEHLCYLVVDETDRL 209 (481)
Q Consensus 180 ~~~l~~~l~~~~~~------~~~~~~~iViDE~H~~ 209 (481)
|+.+.......... .+...+++||||||++
T Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl 187 (540)
T 2vl7_A 152 YPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNL 187 (540)
T ss_dssp THHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGG
T ss_pred hHHhcCHHHHHhhCcccccccCcCCCEEEEEccccH
Confidence 99998754321100 2346789999999998
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.93 E-value=2.1e-25 Score=187.14 Aligned_cols=150 Identities=26% Similarity=0.451 Sum_probs=138.6
Q ss_pred CcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhc
Q 011620 304 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (481)
Q Consensus 304 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 383 (481)
...+.+.+..+....|...+..++....++++||||++...++.+++.|.+.+ +.+..+||+++..+|..+++.|++
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLG---YPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34466777778888899999999998888899999999999999999999876 889999999999999999999999
Q ss_pred CCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccc
Q 011620 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLC 456 (481)
Q Consensus 384 g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~ 456 (481)
|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||++|.|+.|.+++|+.+.+...+..+.+.+..
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 156 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGF 156 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTS
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988888776543
No 78
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=1.1e-23 Score=210.69 Aligned_cols=131 Identities=25% Similarity=0.289 Sum_probs=108.0
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
+|+ .|++.|..++..+++ |+ +.++.||+|||+++.+|++..... +..++|++||+.|+.|.++++..+.
T Consensus 76 lG~-~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~aL~----G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNALT----GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHHTT----CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHHHh----CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 798 999999999998886 66 999999999999999999644332 3469999999999999999999999
Q ss_pred cccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhH-HHhhhcCC-----CcccC---
Q 011620 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLE--- 196 (481)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~~-----~~~~~--- 196 (481)
..+|+++..+.|+....... ...+++|+|+||..| .+++.... .+.+.
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r~-----------------------~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~ 201 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAERR-----------------------KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDH 201 (997)
T ss_dssp HTTTCCEEECCTTCCHHHHH-----------------------HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSS
T ss_pred HhcCCeEEEEeCCCCHHHHH-----------------------HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCC
Confidence 99999999999987643221 224579999999999 67665432 24567
Q ss_pred CccEEEEecchhhh
Q 011620 197 HLCYLVVDETDRLL 210 (481)
Q Consensus 197 ~~~~iViDE~H~~~ 210 (481)
.+.++|+||+|.++
T Consensus 202 ~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 202 PLHYAIIDEVDSIL 215 (997)
T ss_dssp SSCEEEETTHHHHT
T ss_pred CcceEEEechHHHH
Confidence 89999999999876
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=7.1e-25 Score=185.33 Aligned_cols=150 Identities=25% Similarity=0.366 Sum_probs=135.4
Q ss_pred cccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcC
Q 011620 305 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384 (481)
Q Consensus 305 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 384 (481)
..+.+++..+....|...+..+++...++++||||++...++.+++.|...+ +.+..+||+++..+|..+++.|++|
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcC---CCEEEEECCCCHHHHHHHHHHHHCC
Confidence 4566777778888899999999998888899999999999999999999876 8899999999999999999999999
Q ss_pred CceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCC-cchhhhhhcccccch
Q 011620 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVCLVGCLTPLLLCT 457 (481)
Q Consensus 385 ~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~-~~~~~~~i~~~~~~~ 457 (481)
+.+|||||+++++|+|+|++++||+++.|+++..|.||+||++|.|+.|.+++|+.+. +...+..+.+.+...
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN 154 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCC
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999875 456677776655443
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.92 E-value=5.7e-25 Score=184.99 Aligned_cols=150 Identities=27% Similarity=0.435 Sum_probs=132.3
Q ss_pred cccceecccCCC-cHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCC
Q 011620 307 LESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385 (481)
Q Consensus 307 ~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 385 (481)
+.+++..+.... |...+..+++...++++||||++...++.++..|.+.+ +.+..+||+++..+|..+++.|++|+
T Consensus 4 i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 445566666666 89999999998888999999999999999999998876 78999999999999999999999999
Q ss_pred ceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhh
Q 011620 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSD 459 (481)
Q Consensus 386 ~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~ 459 (481)
.+|||||+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.+++|+.+.+...+..+++.+...-+
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 154 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCE
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988887765543
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.92 E-value=5.6e-25 Score=188.06 Aligned_cols=155 Identities=28% Similarity=0.477 Sum_probs=127.6
Q ss_pred CCcccccceecccCCCcHHHHHHHHHhc-CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHH
Q 011620 303 LPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (481)
Q Consensus 303 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f 381 (481)
....+.+.+..++...|...+..++... .++++||||++...++.+++.|...+ +.+..+||+++..+|..+++.|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g---~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT---CCEEEEC--------CHHHHHH
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC---CceEEEeCCCCHHHHHHHHHHH
Confidence 3456677777788888999999999876 57799999999999999999998876 8899999999999999999999
Q ss_pred hcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccchhhh
Q 011620 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCTSDI 460 (481)
Q Consensus 382 ~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~ 460 (481)
++|+.+|||||+++++|+|+|++++||++++|+++..|.||+||++|.|+.|.+++|+.+.+...+..+.+.+....+.
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 171 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 171 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCC
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887665443
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.92 E-value=7.7e-25 Score=187.92 Aligned_cols=169 Identities=27% Similarity=0.367 Sum_probs=132.3
Q ss_pred cccCCceeeecCCccccCCcccccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEc
Q 011620 286 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365 (481)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~ 365 (481)
.++.+|..+..+... .....+.+.+..+....|...+..++... ++++||||++...++.+++.|...+ +.+..+
T Consensus 10 ~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g---~~~~~l 84 (191)
T 2p6n_A 10 GVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKG---VEAVAI 84 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHT---CCEEEE
T ss_pred cccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcC---CcEEEE
Confidence 445566655554433 33456667777777888998898888764 4689999999999999999998876 889999
Q ss_pred cCccChHHHHHHHHHHhcCCceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCC-cc
Q 011620 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EV 444 (481)
Q Consensus 366 ~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~-~~ 444 (481)
||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||++|.|+.|.+++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976 66
Q ss_pred hhhhhhcccccchhh
Q 011620 445 CLVGCLTPLLLCTSD 459 (481)
Q Consensus 445 ~~~~~i~~~~~~~~~ 459 (481)
..+..+.+.+....+
T Consensus 165 ~~~~~l~~~l~~~~~ 179 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQ 179 (191)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccC
Confidence 777777776655444
No 83
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=184.99 Aligned_cols=151 Identities=28% Similarity=0.464 Sum_probs=132.8
Q ss_pred CcccccceecccCCC-cHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHh
Q 011620 304 PERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382 (481)
Q Consensus 304 ~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~ 382 (481)
+..+.+++..++... |...+..++.....+++||||+++..++.++..|.+.+ ..+..+||+++..+|..+++.|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG---HQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECSSCCHHHHHHHHHHHH
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHH
Confidence 345666777776655 88899999988888899999999999999999999876 78999999999999999999999
Q ss_pred cCCceEEEecccccccCCCCCCCEEEEecCC------CChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccc
Q 011620 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLC 456 (481)
Q Consensus 383 ~g~~~vLi~t~~l~~Gidi~~~~~vI~~~~p------~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~ 456 (481)
+|+.+|||||+++++|+|+|++++||+++.| .+...|+||+||+||.|+.|.+++|+.+.+...+..+.+.+..
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 8999999999999999999999999999998888887776654
Q ss_pred h
Q 011620 457 T 457 (481)
Q Consensus 457 ~ 457 (481)
.
T Consensus 162 ~ 162 (175)
T 2rb4_A 162 S 162 (175)
T ss_dssp C
T ss_pred c
Confidence 3
No 84
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=2.2e-24 Score=188.85 Aligned_cols=146 Identities=31% Similarity=0.420 Sum_probs=133.0
Q ss_pred ccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCce
Q 011620 308 ESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQ 387 (481)
Q Consensus 308 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 387 (481)
.+.........|...+..++....++++||||+++..++.+++.|.+.+ +.+..+||+++..+|..+++.|++|+.+
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT---CCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 3455666778899999999998889999999999999999999998876 8899999999999999999999999999
Q ss_pred EEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccc
Q 011620 388 VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLC 456 (481)
Q Consensus 388 vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~ 456 (481)
|||||+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.|++|+++.+...+..+.+.+..
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999998888887766544
No 85
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.91 E-value=2e-23 Score=209.45 Aligned_cols=152 Identities=20% Similarity=0.097 Sum_probs=110.3
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
++||+|.+++..+.+.+..++++++++|||+|||++|++|++. .+.+++|++||++|+.|+.+++..+....+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 7999999999887777777899999999999999999999986 244799999999999999999998877668
Q ss_pred ceEEEeecCCchHH---------------------------------HHHHhhhcCccccCccCCchhHHHhhccCCcEE
Q 011620 130 LSVGLAVGQSSIAD---------------------------------EISELIKRPKLEAGICYDPEDVLQELQSAVDIL 176 (481)
Q Consensus 130 ~~v~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 176 (481)
+++..+.|...... ........+ .....++....+.....++|+
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G---~~~~~Cpy~~ar~~~~~adIV 152 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDG---LQDKFCPYYSLLNSLYKADVI 152 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHH---HHHTCCHHHHHHHHGGGCSEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcC---CcCCcCccHHHHhhhhcCCEE
Confidence 88888877543200 000000000 001122333334555689999
Q ss_pred EeCChhHHHhhhcCCCcccCCccEEEEecchhhhh
Q 011620 177 VATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (481)
Q Consensus 177 v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~~~ 211 (481)
|+||..|.....+..........++||||||++.+
T Consensus 153 V~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 153 ALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99999998876543311224567999999999877
No 86
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=1.8e-23 Score=191.33 Aligned_cols=147 Identities=30% Similarity=0.417 Sum_probs=131.9
Q ss_pred cccceecccCCCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCc
Q 011620 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386 (481)
Q Consensus 307 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 386 (481)
+.++...+....|...+..++....++++||||+++..++.++..|.+.+ +.+..+||++++.+|..+++.|++|+.
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g---~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTT---CCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 45667778888999999999998889999999999999999999998876 889999999999999999999999999
Q ss_pred eEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccc
Q 011620 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLC 456 (481)
Q Consensus 387 ~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~ 456 (481)
+|||||+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.|++|+++.+...+..+++.+..
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999998888887776554
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.82 E-value=6.5e-25 Score=185.53 Aligned_cols=148 Identities=32% Similarity=0.507 Sum_probs=133.4
Q ss_pred cccceecccC-CCcHHHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCC
Q 011620 307 LESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385 (481)
Q Consensus 307 ~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 385 (481)
+.+.+..++. ..|...+..+++...++++||||++...++.+++.|...+ +.+..+||+++..+|.++++.|++|+
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAG---INNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 3444555555 6788888888887777899999999999999999998776 88999999999999999999999999
Q ss_pred ceEEEecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccccch
Q 011620 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLLCT 457 (481)
Q Consensus 386 ~~vLi~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~~~ 457 (481)
.+|||||+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.+++++.+.+...+..+.+.+...
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 999999999999999999999999999999999999999999999999999999999999988888876544
No 88
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.89 E-value=2e-22 Score=203.51 Aligned_cols=88 Identities=22% Similarity=0.170 Sum_probs=74.8
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
+|||.|.+.+..+.+.+..+++++++||||+|||++|++|++..+... +.+++|++||++++.|+.+++..+....+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~---~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER---KLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc---CCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 789999999998887777789999999999999999999999887653 34799999999999999999998877667
Q ss_pred ceEEEeecCCc
Q 011620 130 LSVGLAVGQSS 140 (481)
Q Consensus 130 ~~v~~~~~~~~ 140 (481)
+++..+.|+..
T Consensus 80 ~~~~~l~gr~~ 90 (620)
T 4a15_A 80 IRAIPMQGRVN 90 (620)
T ss_dssp CCEEECCCHHH
T ss_pred eEEEEEECCCc
Confidence 78877777654
No 89
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=173.45 Aligned_cols=143 Identities=21% Similarity=0.236 Sum_probs=103.7
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc--cCCccEEEEcccHHHHHH-HHHHHH
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQ-VKDVFA 122 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~--~~~~~~lil~P~~~L~~q-~~~~~~ 122 (481)
.....|+++|.++++.+++ ++++++.+|||+|||++++.++...+.... ..+.+++|++|+++|+.| +.+.+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred cCCCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 3445899999999999886 789999999999999999999887766542 235589999999999999 788888
Q ss_pred HhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCC-----cccCC
Q 011620 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-----FTLEH 197 (481)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~-----~~~~~ 197 (481)
.+... ++.+..+.|+........ .+..+++|+|+||+++...+..... +.+.+
T Consensus 105 ~~~~~-~~~v~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~ 162 (216)
T 3b6e_A 105 PFLKK-WYRVIGLSGDTQLKISFP---------------------EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSD 162 (216)
T ss_dssp HHHTT-TSCEEECCC---CCCCHH---------------------HHHHHCSEEEEEHHHHHHHHHC-------CCCGGG
T ss_pred HHhcc-CceEEEEeCCcccchhHH---------------------hhccCCCEEEECHHHHHHHHhccCcccccccchhc
Confidence 88664 678888887654322111 1223469999999999998876432 45778
Q ss_pred ccEEEEecchhhhhHhH
Q 011620 198 LCYLVVDETDRLLREAY 214 (481)
Q Consensus 198 ~~~iViDE~H~~~~~~~ 214 (481)
+++||+||||++.+..+
T Consensus 163 ~~~iIiDEah~~~~~~~ 179 (216)
T 3b6e_A 163 FSLIIIDECHHTNKEAV 179 (216)
T ss_dssp CSEEEETTC-------C
T ss_pred ccEEEEECchhhccCCc
Confidence 99999999999876543
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.81 E-value=3.8e-20 Score=170.06 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=100.2
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
+|+++|.++++.++. +++.++++|||+|||.+++.++...+..+ +.+++|++|+++|+.||.+.+.++....+
T Consensus 113 ~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC---SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred CccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC---CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 899999999998886 67789999999999999988777665432 23799999999999999999999976656
Q ss_pred ceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchhh
Q 011620 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 130 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~ 209 (481)
..+..+.++..... ......+|+|+||+.+.... ...+.++++||+||||++
T Consensus 186 ~~~~~~~~~~~~~~------------------------~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~ 237 (282)
T 1rif_A 186 AMIKKIGGGASKDD------------------------KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLA 237 (282)
T ss_dssp GGEEECSTTCSSTT------------------------CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGC
T ss_pred ceEEEEeCCCcchh------------------------hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccC
Confidence 67777777654221 01244699999999875432 234667899999999998
Q ss_pred hhH
Q 011620 210 LRE 212 (481)
Q Consensus 210 ~~~ 212 (481)
...
T Consensus 238 ~~~ 240 (282)
T 1rif_A 238 TGK 240 (282)
T ss_dssp CHH
T ss_pred Ccc
Confidence 654
No 91
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.79 E-value=6.7e-19 Score=156.98 Aligned_cols=143 Identities=20% Similarity=0.231 Sum_probs=101.9
Q ss_pred CCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc-cCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011620 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (481)
...++++|.++++.+.+ ++++++.||||||||.++..+++....... ..+.+++++.|+++++.|+.+.+.....
T Consensus 59 ~~p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 59 LLPVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp TSGGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred cCChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 34689999999999886 899999999999999988888877655432 2344799999999999999888876543
Q ss_pred -ccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEec
Q 011620 127 -AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 127 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE 205 (481)
..+..++....... .....+++|+|+||+++.+.+.. .+.++++||+||
T Consensus 135 ~~~~~~~g~~~~~~~--------------------------~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDE 184 (235)
T 3llm_A 135 EEPGKSCGYSVRFES--------------------------ILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDE 184 (235)
T ss_dssp CCTTSSEEEEETTEE--------------------------ECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECC
T ss_pred cccCceEEEeechhh--------------------------ccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEEC
Confidence 22333322111100 00113468999999999998876 277899999999
Q ss_pred chhh-hhHhHH-hHHHHHHHh
Q 011620 206 TDRL-LREAYQ-AWLPTVLQL 224 (481)
Q Consensus 206 ~H~~-~~~~~~-~~~~~i~~~ 224 (481)
+|.+ .+.++. ..+..+...
T Consensus 185 ah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 185 IHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp TTSCCHHHHHHHHHHHHHHHH
T ss_pred CccCCcchHHHHHHHHHHHhh
Confidence 9985 555554 345555543
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.77 E-value=4.5e-18 Score=151.26 Aligned_cols=117 Identities=28% Similarity=0.300 Sum_probs=93.5
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccC
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 129 (481)
.|+++|.+++..+++ ++++++++|||+|||.+++.++... +.+++|++|+++|+.||.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~~----~ 157 (237)
T 2fz4_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----G 157 (237)
T ss_dssp CCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS-------CSCEEEEESSHHHHHHHHHHHGGG----C
T ss_pred CcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHhC----C
Confidence 799999999998776 6679999999999999988766542 347999999999999999998874 6
Q ss_pred ce-EEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecchh
Q 011620 130 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (481)
Q Consensus 130 ~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H~ 208 (481)
+. +..+.|+.. ...+|+|+|++.+....... ...+++||+||+|.
T Consensus 158 ~~~v~~~~g~~~------------------------------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~ 203 (237)
T 2fz4_A 158 EEYVGEFSGRIK------------------------------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHH 203 (237)
T ss_dssp GGGEEEESSSCB------------------------------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSC
T ss_pred CCeEEEEeCCCC------------------------------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCcc
Confidence 67 777776543 23489999999987765531 23588999999999
Q ss_pred hhhHhHH
Q 011620 209 LLREAYQ 215 (481)
Q Consensus 209 ~~~~~~~ 215 (481)
+.+..+.
T Consensus 204 l~~~~~~ 210 (237)
T 2fz4_A 204 LPAESYV 210 (237)
T ss_dssp CCTTTHH
T ss_pred CCChHHH
Confidence 8765543
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.73 E-value=8.5e-18 Score=151.97 Aligned_cols=125 Identities=15% Similarity=0.233 Sum_probs=96.3
Q ss_pred cCCCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhc-CCcceEEEEccCccChHHHHHHHHHHhcC-Cce-EE
Q 011620 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VL 389 (481)
Q Consensus 315 ~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vL 389 (481)
....|...+..++... .+.++||||++...++.+...|.+. + +.+..+||+++..+|.++++.|+++ +.+ +|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L 169 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIV 169 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHC---SCCCEECTTSCHHHHHHHHHHHHHCTTCCEEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHhcCCCCCCEEE
Confidence 3456888888888765 6789999999999999999999874 5 7788999999999999999999998 677 68
Q ss_pred EecccccccCCCCCCCEEEEecCCCChhhHHHHHhhhhcCCCCCcEEE--EEeCC
Q 011620 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT--LLHKD 442 (481)
Q Consensus 390 i~t~~l~~Gidi~~~~~vI~~~~p~s~~~~~Q~~GR~~R~~~~g~~i~--~~~~~ 442 (481)
++|+++++|+|++.+++||++|+||++..+.|++||++|.|+.+.+.+ ++..+
T Consensus 170 ~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 170 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp EECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred EehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 999999999999999999999999999999999999999998876544 44443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.48 E-value=2.9e-07 Score=92.89 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=59.3
Q ss_pred HHHHHHHHc-CCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHh--HHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 38 RLKVALQNM-GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY--ALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 38 ~~~~~l~~~-~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~--~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
.+...+.+. +-..-.+.|+.|+..++. ++.+++.|++|||||.+. +++++..+. ...+.++++++||..++
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~--~~~~~~vll~APTg~AA 209 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAA 209 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTC--SSCCCCEEEEBSSHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhh--hcCCCeEEEEeCChhHH
Confidence 344555553 212236889999998886 788999999999999653 333333221 12356899999999999
Q ss_pred HHHHHHHHHhccccC
Q 011620 115 LQVKDVFAAIAPAVG 129 (481)
Q Consensus 115 ~q~~~~~~~~~~~~~ 129 (481)
.++.+.+.......+
T Consensus 210 ~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 210 ARLTESLGKALRQLP 224 (608)
T ss_dssp HHHHHHHTHHHHHSS
T ss_pred HHHHHHHHHHHhcCC
Confidence 998888776544333
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.44 E-value=5.8e-07 Score=91.79 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=53.8
Q ss_pred CCchhhHHHHHhhhCCCCCCC-CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 50 SLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~-~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
.+++.|.+|+..++. .+ -.+|.||+|||||.+..-.+.+.+.. +.++|+++||..-++++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~----~~~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALS----QKELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHH----CSSEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc----CCCceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHHhc
Confidence 588999999998874 44 47899999999999966655554432 457999999999999988888655
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.31 E-value=6.8e-06 Score=83.41 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=54.4
Q ss_pred CCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
+..+++.|.+|+..++. +...+|.||+|||||.+....+ ..+... .+.++++++||...++++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i-~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIV-YHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHH-HHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHH-HHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 34689999999998875 5678999999999999865533 333321 3457999999999999988887654
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.3e-05 Score=83.12 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=54.1
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
..+++.|.+|+..++. +...+|.||+|||||.+....+. .+... .+.++++++||...++++.+.+...
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~-~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVY-HLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHH-HHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHH-HHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4688999999998875 56689999999999998655443 33321 2347999999999999999888765
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.19 E-value=1.4e-05 Score=82.87 Aligned_cols=69 Identities=25% Similarity=0.233 Sum_probs=54.0
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
..+++.|.+|+..++. +...+|.||+|||||.+... ++..+... .+.++++++||...++++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~-~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHH-HHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHH-HHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4688999999998875 56689999999999998554 44444332 3457999999999999988887654
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.15 E-value=3.2e-06 Score=82.56 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=52.3
Q ss_pred cCCCCCchhhHHHHHhhhCCCCCCC-CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHH
Q 011620 46 MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (481)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~-~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~ 121 (481)
+.|..|++.|++|+..++..+..++ .++|.|+.|||||.+... ++..+..... ..+++++||...+..+.+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~-~~~~l~~~~~--~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKF-IIEALISTGE--TGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHH-HHHHHHHTTC--CCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHH-HHHHHHhcCC--ceEEEecCcHHHHHHHHhhh
Confidence 4678899999999988765333333 799999999999987543 4555544321 26999999998877655444
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.98 E-value=1.8e-05 Score=79.09 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=49.3
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~ 121 (481)
.+++.|.+|+..+.. ++.++|.|++|||||.+... ++..+.. .+.++++++||...+..+.+.+
T Consensus 189 ~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~-l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKA-VADLAES---LGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHH-HHHHHHH---TTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHH-HHHHHHh---cCCeEEEecCcHHHHHHhHhhh
Confidence 689999999988875 67899999999999987433 4444433 3457999999999887665543
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.55 E-value=0.00014 Score=74.48 Aligned_cols=83 Identities=22% Similarity=0.161 Sum_probs=62.4
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc-
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA- 127 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~- 127 (481)
..+++-|.+|+.. .+..++|.|+.|||||.+.+.-+...+.....+..+++++++|+..+.++.+.+......
T Consensus 8 ~~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 8 DSLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp TTCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred hcCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 4789999999752 256799999999999999777676666554334458999999999999999998877432
Q ss_pred -cCceEEEeec
Q 011620 128 -VGLSVGLAVG 137 (481)
Q Consensus 128 -~~~~v~~~~~ 137 (481)
.++.+.++++
T Consensus 82 ~~~~~v~Tfhs 92 (647)
T 3lfu_A 82 QGGMWVGTFHG 92 (647)
T ss_dssp CTTCEEEEHHH
T ss_pred cCCcEEEcHHH
Confidence 2445555443
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.53 E-value=0.001 Score=60.19 Aligned_cols=126 Identities=15% Similarity=0.057 Sum_probs=86.7
Q ss_pred cCCCcHHHHHHHHHhc--CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEec
Q 011620 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (481)
Q Consensus 315 ~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t 392 (481)
..+.|...+..++... .+.++|||+......+.+.+++...+ +....+.|.....++ . -.++.+.+.+.|
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~---~~y~RlDG~~~~~~~-k----~~~~~~~i~Llt 177 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNK---VHIKRYDGHSIKSAA-A----ANDFSCTVHLFS 177 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSS---CEEEESSSCCC------------CCSEEEEEEE
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCC---CceEeCCCCchhhhh-h----cccCCceEEEEE
Confidence 3566777777666544 46699999999999999999998765 888999988443221 1 124455565556
Q ss_pred ccccccCC-----CCCCCEEEEecCCCChhh-HHHHHhhhhcCC----CCCcEEEEEeCCcchhhh
Q 011620 393 DAMTRGMD-----VEGVNNVVNYDKPAYIKT-YIHRAGRTARAG----QLGRCFTLLHKDEVCLVG 448 (481)
Q Consensus 393 ~~l~~Gid-----i~~~~~vI~~~~p~s~~~-~~Q~~GR~~R~~----~~g~~i~~~~~~~~~~~~ 448 (481)
...+-|++ +...+.||.||..|++.. .+|.+-|+.|.+ +.-.++-++..+..+...
T Consensus 178 sag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~ 243 (328)
T 3hgt_A 178 SEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCR 243 (328)
T ss_dssp SSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHH
T ss_pred CCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHH
Confidence 66666776 567999999999999987 499998988863 234567777766655543
No 103
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.38 E-value=0.00033 Score=71.94 Aligned_cols=82 Identities=18% Similarity=0.092 Sum_probs=63.1
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcccc-
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV- 128 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 128 (481)
.+++-|++|+... +..++|.|+.|||||.+...-+.+.+...+.+..+++++|.|+..+.++.+.+.......
T Consensus 2 ~L~~~Q~~av~~~------~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~ 75 (673)
T 1uaa_A 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 (673)
T ss_dssp CCCHHHHHHHHCC------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT
T ss_pred CCCHHHHHHHhCC------CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCccc
Confidence 4789999997541 567999999999999997777776666543344579999999999999999998875432
Q ss_pred --CceEEEeec
Q 011620 129 --GLSVGLAVG 137 (481)
Q Consensus 129 --~~~v~~~~~ 137 (481)
++.+.++++
T Consensus 76 ~~~~~v~Tfhs 86 (673)
T 1uaa_A 76 ARGLMISTFHT 86 (673)
T ss_dssp TTTSEEEEHHH
T ss_pred ccCCEEEeHHH
Confidence 456666655
No 104
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.24 E-value=0.00062 Score=70.33 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=63.1
Q ss_pred CCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc-
Q 011620 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA- 127 (481)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~- 127 (481)
..+++-|++|+.. .+..++|.|+.|||||.+...-+.+.+........+++++|.|+..+.++.+.+......
T Consensus 10 ~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 4789999999754 156899999999999999777777666644334457999999999999999888876432
Q ss_pred -cCceEEEeec
Q 011620 128 -VGLSVGLAVG 137 (481)
Q Consensus 128 -~~~~v~~~~~ 137 (481)
.++.+.++++
T Consensus 84 ~~~~~v~Tfhs 94 (724)
T 1pjr_A 84 AEDVWISTFHS 94 (724)
T ss_dssp GTTSEEEEHHH
T ss_pred ccCcEEeeHHH
Confidence 2456666554
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.16 E-value=0.00048 Score=65.43 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=33.1
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (481)
+-.++.|+.|+|||... .+.+.. .+.+|++||++++..+.+.+.
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~~~-----~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRVNF-----EEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHCCT-----TTCEEEESCHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHH----HHHhcc-----CCeEEEeCCHHHHHHHHHHhh
Confidence 34678999999999963 332221 258999999999988877774
No 106
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.83 E-value=0.0033 Score=58.97 Aligned_cols=71 Identities=14% Similarity=0.019 Sum_probs=54.0
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhcc
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 126 (481)
.|.|+|...+..+.. .+..++..+-+.|||.+....++..+.. .++..+++++|+...+..+.+.+..+..
T Consensus 163 ~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~--~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCF--NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHS--SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 789999998876532 3558899999999999877666554443 3455799999999998877777776654
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.81 E-value=0.0064 Score=51.03 Aligned_cols=39 Identities=21% Similarity=0.096 Sum_probs=27.3
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~ 111 (481)
++-.++.||+|+|||..++..+.... ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~----~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK----IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH----HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH----HCCCEEEEEEecc
Confidence 45567899999999988665443332 3355799999884
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.68 E-value=0.0041 Score=52.02 Aligned_cols=39 Identities=21% Similarity=0.057 Sum_probs=27.0
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~ 111 (481)
+.-.++.||+|+|||..++..+..... .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~----~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL----GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH----TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEeecc
Confidence 455788999999999986554443322 244689988884
No 109
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.68 E-value=0.0046 Score=62.17 Aligned_cols=72 Identities=14% Similarity=0.025 Sum_probs=55.7
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccc
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 127 (481)
.|.|+|...+..+.. .+..++..+-|+|||.+....++..+... ++..++++.|+...+..+.+.+..+...
T Consensus 163 ~l~p~Q~~i~~~l~~----~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~--~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHH----CSEEEEEECSSSCHHHHHHHHHHHHHHTS--SSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhcc----ccEEEEEEcCccChHHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 589999998876532 46689999999999998766555555443 3557999999999999888888776554
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.61 E-value=0.0043 Score=52.67 Aligned_cols=40 Identities=23% Similarity=0.089 Sum_probs=27.2
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~ 112 (481)
+.-.++.+++|+|||..++..+.... ..+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~----~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ----FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH----HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH----HCCCEEEEEEeccC
Confidence 34456899999999988666544433 33557999998864
No 111
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.51 E-value=0.012 Score=49.05 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=18.9
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
++.+++.||+|+|||..+.. +...+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~-i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVA-TLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHH-HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH-HHHHH
Confidence 67899999999999987543 33333
No 112
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.49 E-value=0.0076 Score=55.87 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=29.1
Q ss_pred CchhhHHHHHhhhCCCCCCC---CEEEECCCCchHHHHhHH
Q 011620 51 LFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~---~~iv~~~tGsGKT~~~~~ 88 (481)
++|+|.+++..+...+..++ .+++.||.|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 57899998887765544443 489999999999988655
No 113
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.30 E-value=0.0046 Score=52.36 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=26.7
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~ 112 (481)
|.-.++.+|+|+|||..++..+ ..+. ..+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~-~r~~---~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRL-RRGI---YAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHHH---HTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHH-HHHH---HcCCceEEEEeccC
Confidence 4446789999999998755544 3332 23457999999864
No 114
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.23 E-value=0.002 Score=55.49 Aligned_cols=39 Identities=21% Similarity=0.102 Sum_probs=27.2
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~ 111 (481)
+.-.++.|++|+|||..++..+.... ..+.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~----~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE----YADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH----HTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH----hcCCEEEEEEecc
Confidence 45577899999999988665444333 2344789887765
No 115
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.05 E-value=0.013 Score=48.82 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=26.6
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEccc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~ 110 (481)
++-.++.||+|+|||.-.+-.+-+... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~----~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQI----AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH----TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH----cCCeEEEEccc
Confidence 455688999999999764544433332 34579999887
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.031 Score=50.91 Aligned_cols=44 Identities=11% Similarity=-0.078 Sum_probs=27.7
Q ss_pred chhhHHHHHhhhCCC---CCCCCEEEECCCCchHHHHhHHHHHHHHHh
Q 011620 52 FPVQVAVWQETIGPG---LFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (481)
Q Consensus 52 ~~~Q~~a~~~~~~~~---~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~ 96 (481)
|.-|.+.+...+... ..+.++++.||+|+|||.+.-. ++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~-v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVND-VMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHH-HHHHHHH
Confidence 555555554433321 2356799999999999988554 4445543
No 117
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.02 E-value=0.0096 Score=65.27 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=54.7
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhc--cCCccEEEEcccHHHHHHHHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~--~~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
.+++-|.+++.. .+++++|.|+.|||||.+.+--++..+..+. ....+++++++|+..+..+.+.+..
T Consensus 10 ~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 789999998753 2679999999999999997777777766532 1334799999999999998887765
No 118
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.70 E-value=0.012 Score=50.52 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=28.7
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~ 112 (481)
+.-.++.|++|+|||..++..+.... ..+.+++++.|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~----~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ----IAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH----TTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH----HCCCeEEEEeecCC
Confidence 45567899999999988665444433 34557999988864
No 119
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.50 E-value=0.24 Score=45.36 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=23.5
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
+..+++.||+|+|||..+-. +...+... +..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~~~---~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAKKR---GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHHHT---TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHC---CCEEEEEE
Confidence 56899999999999987443 44433322 33466554
No 120
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.31 E-value=0.15 Score=43.40 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=15.6
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+++.||+|+|||..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIA 57 (226)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4599999999999986443
No 121
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.11 E-value=0.19 Score=48.34 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=24.6
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
.+.+++.||+|+|||..+-. +...+... .++..++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~a-ia~~l~~~-~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS-IGNYVVQN-EPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHH-HHHHHHHH-CCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEeeH
Confidence 46799999999999987543 44444332 22334665543
No 122
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.94 E-value=0.046 Score=54.80 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=41.8
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q 116 (481)
.++.-|.+|+..+.... ....++.|+-|.|||.+.-+ ++..+.. +++|.+|+..-+..
T Consensus 175 ~~T~dQ~~al~~~~~~~--~~~~vlta~RGRGKSa~lG~-~~a~~~~------~~~vtAP~~~a~~~ 232 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP--PGVAAVTAARGRGKSALAGQ-LISRIAG------RAIVTAPAKASTDV 232 (671)
T ss_dssp SCCHHHHHHHHHHTTCC--SEEEEEEECTTSSHHHHHHH-HHHHSSS------CEEEECSSCCSCHH
T ss_pred CCCHHHHHHHHHHHHhh--hCeEEEecCCCCCHHHHHHH-HHHHHHh------CcEEECCCHHHHHH
Confidence 67889999998877643 23478999999999965444 4444321 47999999876654
No 123
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.86 E-value=0.062 Score=48.81 Aligned_cols=19 Identities=16% Similarity=-0.165 Sum_probs=15.7
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+++.||.|+|||.++..
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLE 37 (305)
T ss_dssp EEEEEECSSSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4689999999999987544
No 124
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.44 E-value=0.21 Score=45.80 Aligned_cols=14 Identities=36% Similarity=0.321 Sum_probs=12.2
Q ss_pred CccEEEEecchhhh
Q 011620 197 HLCYLVVDETDRLL 210 (481)
Q Consensus 197 ~~~~iViDE~H~~~ 210 (481)
..++|++||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 56799999999885
No 125
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.09 E-value=0.13 Score=48.43 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=16.8
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.||+|+|||..+-.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 56799999999999987543
No 126
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.03 E-value=0.081 Score=49.18 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=15.8
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
.++++.||+|+|||..+-.
T Consensus 59 ~~~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILA 77 (353)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4599999999999987543
No 127
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.89 E-value=0.59 Score=45.23 Aligned_cols=75 Identities=15% Similarity=0.047 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecccccccCC
Q 011620 321 LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMD 400 (481)
Q Consensus 321 ~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~l~~Gid 400 (481)
..+...++. .+.++++.+.|...++++.+.|.+.+ +.+...... . .+..| .|.|+...++.|+.
T Consensus 372 ~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~---i~~~~~~~~-~---------~~~~g--~v~i~~g~L~~GF~ 435 (483)
T 3hjh_A 372 DALRKFLET-FDGPVVFSVESEGRREALGELLARIK---IAPQRIMRL-D---------EASDR--GRYLMIGAAEHGFV 435 (483)
T ss_dssp HHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGT---CCCEECSCG-G---------GCCTT--CEEEEESCCCSCEE
T ss_pred HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcC---CCceecCch-h---------hcCCC--cEEEEEcccccCcc
Confidence 344444432 35789999999999999999998876 443333211 1 12233 56677778899999
Q ss_pred CCCCCEEEEec
Q 011620 401 VEGVNNVVNYD 411 (481)
Q Consensus 401 i~~~~~vI~~~ 411 (481)
+|....+|+..
T Consensus 436 ~p~~klaVITE 446 (483)
T 3hjh_A 436 DTVRNLALICE 446 (483)
T ss_dssp ETTTTEEEEEH
T ss_pred cCCCCEEEEEc
Confidence 99888888765
No 128
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.88 E-value=0.16 Score=52.55 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcC-CcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cccccCCCCCCCEEE
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l~~Gidi~~~~~vI 408 (481)
.+.+++|.+|++.-+...++.+.+.. ..++.+..++|+.+..++...++.+.+|+.+|+|+|. .+...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 35789999999999988888876652 3348899999999999999999999999999999996 444567888899988
Q ss_pred EecCC
Q 011620 409 NYDKP 413 (481)
Q Consensus 409 ~~~~p 413 (481)
+....
T Consensus 496 IDEaH 500 (780)
T 1gm5_A 496 IDEQH 500 (780)
T ss_dssp EESCC
T ss_pred ecccc
Confidence 76654
No 129
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.82 E-value=0.088 Score=48.28 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.4
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+++.||+|+|||..+-.
T Consensus 48 ~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 599999999999987543
No 130
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.55 E-value=0.39 Score=45.33 Aligned_cols=19 Identities=37% Similarity=0.580 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
...+++.||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998644
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.19 E-value=0.2 Score=47.16 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
.+.+++.||+|+|||..+-.
T Consensus 45 ~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 35699999999999987544
No 132
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=92.67 E-value=1.7 Score=34.93 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=53.7
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~ 180 (481)
+.++||.++++..+..+++.+... |+.+..++|+....+...... .......+|+|+|
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~-----------------~f~~g~~~vlv~T- 92 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMN-----------------EFKRGEYRYLVAT- 92 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEEC-
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEC-
Confidence 347999999999999888888775 788999999876554422211 1122447899999
Q ss_pred hhHHHhhhcCCCcccCCccEEEEecc
Q 011620 181 GRLMDHINATRGFTLEHLCYLVVDET 206 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iViDE~ 206 (481)
+.+ ..++++.++++||.-+.
T Consensus 93 ~~~------~~Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 93 DVA------ARGIDIENISLVINYDL 112 (163)
T ss_dssp GGG------TTTCCCSCCSEEEESSC
T ss_pred Chh------hcCCchhcCCEEEEeCC
Confidence 222 24577778888876443
No 133
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.27 E-value=0.85 Score=38.82 Aligned_cols=116 Identities=6% Similarity=0.120 Sum_probs=72.5
Q ss_pred CcEEEEcCCchhHHHHHHHHhhcCCc--ceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cc-----cccCCCCCC
Q 011620 333 EKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM-----TRGMDVEGV 404 (481)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l-----~~Gidi~~~ 404 (481)
.++||.+|++.-+..+.+.+.+.... +..+..++|+.+..... +.+.++..+|+|+|. .+ ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999998888776422 47888899988765443 344556779999994 22 123567788
Q ss_pred CEEEEecCCCCh--hhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhc
Q 011620 405 NNVVNYDKPAYI--KTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLT 451 (481)
Q Consensus 405 ~~vI~~~~p~s~--~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~ 451 (481)
+++|+.....-. ..+...+.+..+.-....-+++++..-...+.++.
T Consensus 160 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 208 (220)
T 1t6n_A 160 KHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVC 208 (220)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHH
T ss_pred CEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHH
Confidence 888876543111 23444444444433344556666654433343333
No 134
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.82 E-value=0.32 Score=46.24 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=66.3
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-ccc---ccCCCCCCCE
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMT---RGMDVEGVNN 406 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l~---~Gidi~~~~~ 406 (481)
.+.++||.+|++.-+..+++.+.+.+..++.+..++|+.+..++....+.+..|+.+|+|+|. .+. .-++...+++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 567899999999999999999988644457899999999998888888889999999999995 221 1245567888
Q ss_pred EEEecC
Q 011620 407 VVNYDK 412 (481)
Q Consensus 407 vI~~~~ 412 (481)
||+...
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 887654
No 135
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.73 E-value=0.15 Score=43.05 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=18.2
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHH
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
..+++.||+|+|||..+.. +...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~-i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA-IANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH-HHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHH
Confidence 6799999999999987543 44333
No 136
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.51 E-value=0.13 Score=40.76 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 011620 68 FERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~ 87 (481)
.+.++++.||+|+|||..+-
T Consensus 23 ~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 36789999999999998643
No 137
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.49 E-value=0.53 Score=42.86 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=15.2
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+++.||+|+|||..+..
T Consensus 44 ~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp CEEEECSTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 499999999999987544
No 138
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.26 E-value=0.13 Score=47.58 Aligned_cols=41 Identities=20% Similarity=0.039 Sum_probs=28.0
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEccc
Q 011620 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 66 ~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~ 110 (481)
+..++-++|.+|+|+|||..++..+...... +.+++|+...
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~----g~~vlyi~~E 98 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAA----GGIAAFIDAE 98 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECC
Confidence 3346678999999999999866655444322 3468887644
No 139
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.10 E-value=0.23 Score=44.85 Aligned_cols=44 Identities=11% Similarity=-0.084 Sum_probs=30.2
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
.| .+.|.+|+|+|||..++..+...... ..+.+++|+..-..+.
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~--g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQ--YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHH--CTTCEEEEEESSCCCC
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhc--CCCceEEEEeccchhh
Confidence 35 67899999999999877655554432 1244788887665553
No 140
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.04 E-value=1.2 Score=42.27 Aligned_cols=35 Identities=20% Similarity=0.103 Sum_probs=23.2
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
..+++.+++|+|||.+....+ ..+.. .+.+++++.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA-~~l~~---~G~kVllv~ 132 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA-YFYKK---RGYKVGLVA 132 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH-HHHHH---TTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH---cCCeEEEEe
Confidence 347789999999999866533 33332 244676665
No 141
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=90.78 E-value=3.1 Score=33.38 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=52.4
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~ 180 (481)
+.++||.++++..+..+++.+... ++.+..++|+....+...... .......+|+|+|.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMK-----------------EFRSGSSRILISTD 88 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEEEG
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHH-----------------HHHcCCCEEEEEcC
Confidence 347999999999999888888765 778999999876554432211 11224478999992
Q ss_pred hhHHHhhhcCCCcccCCccEEEEec
Q 011620 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iViDE 205 (481)
. + ..++++.++++||.-+
T Consensus 89 -~----~--~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 89 -L----L--ARGIDVQQVSLVINYD 106 (165)
T ss_dssp -G----G--TTTCCCCSCSEEEESS
T ss_pred -h----h--hcCCCcccCCEEEEeC
Confidence 1 1 2456777788877643
No 142
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=90.40 E-value=2.9 Score=33.94 Aligned_cols=78 Identities=13% Similarity=0.119 Sum_probs=53.6
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~ 180 (481)
+.++||.|+++.-+..+++.+... ++.+..++|+....+....+. .......+|+|+|.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~-----------------~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQ-----------------QFKDFQRRILVATN 89 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEESS
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHH-----------------HHHCCCCcEEEECC
Confidence 347999999999999888888775 788999999876554422211 11224578999992
Q ss_pred hhHHHhhhcCCCcccCCccEEEEecc
Q 011620 181 GRLMDHINATRGFTLEHLCYLVVDET 206 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iViDE~ 206 (481)
.+ ..++++.++++||.-+.
T Consensus 90 -~~------~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 90 -LF------GRGMDIERVNIAFNYDM 108 (172)
T ss_dssp -CC------STTCCGGGCSEEEESSC
T ss_pred -ch------hcCcchhhCCEEEEECC
Confidence 11 24567777888776443
No 143
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.37 E-value=0.19 Score=46.71 Aligned_cols=48 Identities=19% Similarity=0.094 Sum_probs=31.3
Q ss_pred HHhhhC--CCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEccc
Q 011620 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 59 ~~~~~~--~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~ 110 (481)
++.++. -+..+.-++|.+++|+|||..++..+...... +.+++|+...
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~----g~~vlyid~E 100 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE 100 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEeCC
Confidence 444443 23345678999999999999876655544332 3368888754
No 144
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.31 E-value=0.45 Score=51.34 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=67.3
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cccc---cCCCCCCCE
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTR---GMDVEGVNN 406 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l~~---Gidi~~~~~ 406 (481)
.+.++||.+|++.-+..+++.+.+.+..++.+..++|+.+..++....+.+.+|+.+|+|+|. .+.. -+++.++.+
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 467899999999999999999998665557899999999998888899999999999999995 2211 145667899
Q ss_pred EEEecC
Q 011620 407 VVNYDK 412 (481)
Q Consensus 407 vI~~~~ 412 (481)
||+...
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 887654
No 145
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.18 E-value=0.11 Score=41.22 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchHHHH
Q 011620 69 ERDLCINSPTGSGKTLS 85 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~ 85 (481)
+.++++.||+|+|||..
T Consensus 27 ~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETV 43 (143)
T ss_dssp SSCEEEEEETTCCHHHH
T ss_pred CCcEEEECCCCccHHHH
Confidence 57899999999999985
No 146
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.15 E-value=0.16 Score=46.98 Aligned_cols=41 Identities=20% Similarity=-0.001 Sum_probs=26.8
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~ 112 (481)
.+.-++|.+|+|+|||..++..+.... . .+.+++|+.....
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~-~---~gg~VlyId~E~s 100 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ-K---MGGVAAFIDAEHA 100 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH-H---TTCCEEEEESSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-h---cCCeEEEEecccc
Confidence 356688999999999987555443322 2 2346888865443
No 147
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=90.10 E-value=1.9 Score=35.57 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=44.5
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeC
Q 011620 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T 179 (481)
++.++||.|+++.-+..+++.+... |+.+..++|+....+.... +........+|+|+|
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~-----------------~~~f~~g~~~vLvaT 103 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEA-----------------LHQFRSGKSPILVAT 103 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHH-----------------HHHHHHTSSSEEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHH-----------------HHHHHcCCCeEEEEc
Confidence 4557999999999999888888765 7889999987654332111 111122457899999
Q ss_pred ChhHHHhhhcCCCcccCCccEEEEe
Q 011620 180 PGRLMDHINATRGFTLEHLCYLVVD 204 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iViD 204 (481)
+.+ ..++++.++++||.=
T Consensus 104 -~~~------~~Gldi~~~~~VI~~ 121 (185)
T 2jgn_A 104 -AVA------ARGLDISNVKHVINF 121 (185)
T ss_dssp -C------------CCCSBSEEEES
T ss_pred -Chh------hcCCCcccCCEEEEe
Confidence 222 134667778777763
No 148
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.07 E-value=0.33 Score=54.98 Aligned_cols=43 Identities=21% Similarity=0.122 Sum_probs=31.5
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHH
Q 011620 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L 113 (481)
..++.+++.+|+|+|||..+...+.+... .+.+++|+.....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~----~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHT----TTCCEEEECTTSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEEEccccc
Confidence 34678999999999999987665554443 35578888866443
No 149
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.89 E-value=1.4 Score=41.88 Aligned_cols=60 Identities=22% Similarity=0.070 Sum_probs=35.8
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc--ccHHHHHHHHHHHHHhccccCceEEEee
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLAV 136 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~--P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 136 (481)
..+++.+++|+|||.+....+ .++.. .+.+++++. |.+.-+ .+++..+....++.+....
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~~---~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~ 162 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQK---RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNP 162 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHT---TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCT
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHHH---CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecC
Confidence 347789999999999866544 33332 344676665 333322 3455555555576665443
No 150
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=89.76 E-value=3.7 Score=34.65 Aligned_cols=75 Identities=23% Similarity=0.197 Sum_probs=52.4
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~ 180 (481)
+.++||.|+++.-++.+++.+... ++.+..++|+.+.......+. .......+|+|+|.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~-----------------~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLG-----------------AFRQGEVRVLVATD 89 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHH-----------------HHHSSSCCEEEECT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHH-----------------HHHCCCCeEEEecC
Confidence 347999999999999888888765 788999999877655432211 11224478999992
Q ss_pred hhHHHhhhcCCCcccCCccEEEE
Q 011620 181 GRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVi 203 (481)
.+ ..++++.++++||.
T Consensus 90 -----~~--~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 90 -----VA--ARGLDIPQVDLVVH 105 (212)
T ss_dssp -----TT--TCSSSCCCBSEEEE
T ss_pred -----hh--hcCCCCccCcEEEE
Confidence 11 24577778888774
No 151
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.59 E-value=3.4 Score=33.54 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=52.1
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~ 180 (481)
+.++||.|+++..+..+++.+... |+.+..++|+....+...... .......+|+|+|.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~-----------------~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQ-----------------RFRDGKEKVLITTN 92 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHH-----------------HHHTTSCSEEEECC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEec
Confidence 447999999999998888877764 788999999877655432211 11224578999992
Q ss_pred hhHHHhhhcCCCcccCCccEEEE
Q 011620 181 GRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVi 203 (481)
. + ..++++.++++||.
T Consensus 93 -~----~--~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 93 -V----C--ARGIDVKQVTIVVN 108 (175)
T ss_dssp -S----C--CTTTCCTTEEEEEE
T ss_pred -c----h--hcCCCcccCCEEEE
Confidence 1 1 24577778888884
No 152
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.90 E-value=1.5 Score=47.73 Aligned_cols=82 Identities=11% Similarity=0.241 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhc-CCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cccccCCCCCCCEEE
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l~~Gidi~~~~~vI 408 (481)
.+.+++|.+|+..-+...++.+.+. ...+..+..+++..+..++...++.+..|+.+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 3568999999999999888888754 33347888899999999999999999999999999995 555567888888888
Q ss_pred EecC
Q 011620 409 NYDK 412 (481)
Q Consensus 409 ~~~~ 412 (481)
+...
T Consensus 731 iDEa 734 (1151)
T 2eyq_A 731 VDEE 734 (1151)
T ss_dssp EESG
T ss_pred Eech
Confidence 7553
No 153
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.86 E-value=2.2 Score=38.53 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=22.2
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
+-+++.+++|+|||.+....+. .+.. .+.+++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~-~l~~---~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK-MFVD---EGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-HHHH---TTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHH-HHHh---cCCEEEEEc
Confidence 3477899999999987655332 2322 233566654
No 154
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=88.47 E-value=3 Score=34.55 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=52.4
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCCh
Q 011620 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (481)
Q Consensus 102 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~ 181 (481)
.++||.|+++.-++.+++.+... |+.+..++|+....+....+. .......+|+|+| +
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~-----------------~F~~g~~~vLvaT-~ 112 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIE-----------------AFREGKKDVLVAT-D 112 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHH-----------------HHHHTSCSEEEEC-H
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHhcCCCEEEEEc-C
Confidence 47999999999999888888766 788999999876554432211 1122457899999 2
Q ss_pred hHHHhhhcCCCcccCCccEEEEec
Q 011620 182 RLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~iViDE 205 (481)
.+. .++++.++++||.=+
T Consensus 113 ----~~~--~Gldi~~v~~VI~~d 130 (191)
T 2p6n_A 113 ----VAS--KGLDFPAIQHVINYD 130 (191)
T ss_dssp ----HHH--TTCCCCCCSEEEESS
T ss_pred ----chh--cCCCcccCCEEEEeC
Confidence 222 346677788777643
No 155
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.06 E-value=0.54 Score=42.67 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=23.9
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHH-hhccCCccEEEEc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLS-NRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~-~~~~~~~~~lil~ 108 (481)
++++++.||+|+|||..+.. +...+. .. +..++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~a-ia~~~~~~~---g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA-MAHELSEKK---GVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH-HHHHHHHHS---CCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHHHhc---CCcEEEEE
Confidence 57899999999999997554 333333 22 33465554
No 156
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.80 E-value=0.53 Score=40.97 Aligned_cols=52 Identities=19% Similarity=0.117 Sum_probs=31.8
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 123 (481)
.|.-++|.|++|+|||..++-.+.+..... +..++|++-. .-..++.+.+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~---~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCCceeeccc-CCHHHHHHHHHH
Confidence 356789999999999988666555544432 2247776533 223444444443
No 157
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.59 E-value=0.31 Score=46.34 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
.+.+++.||+|||||+.+-
T Consensus 206 prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCEEEEESCTTTTHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5779999999999998743
No 158
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.37 E-value=0.66 Score=42.00 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.7
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+.++++.||+|+|||..+-.
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45799999999999987544
No 159
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.32 E-value=3.2 Score=36.07 Aligned_cols=119 Identities=12% Similarity=0.160 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCC-cceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cc----c--ccCCCC
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----T--RGMDVE 402 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l----~--~Gidi~ 402 (481)
.+.++||.+|++.-+..+++.+.+... .+..+..++|+.+.......+ .+..+|+|+|. .+ . .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 345799999999999998888776532 246788888887764443322 24678999994 21 1 346777
Q ss_pred CCCEEEEecCCCChh-hHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhccc
Q 011620 403 GVNNVVNYDKPAYIK-TYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPL 453 (481)
Q Consensus 403 ~~~~vI~~~~p~s~~-~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~ 453 (481)
.++++|+.....-.. .|...+-+..+.-....-+++++..-...+.++.+.
T Consensus 186 ~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~ 237 (249)
T 3ber_A 186 ALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRA 237 (249)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHH
T ss_pred ccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHH
Confidence 888888765321100 111111222221123345666666544444444443
No 160
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=87.22 E-value=2.4 Score=35.45 Aligned_cols=117 Identities=13% Similarity=0.107 Sum_probs=68.7
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-----cccc-cCCCCCCC
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVEGVN 405 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-----~l~~-Gidi~~~~ 405 (481)
+.++||.+|++..+..+.+.+.+.... ..+..++|+.+.......+. ...+|+|+|. .+.. .+++..++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPH-LKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTT-SCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhc-ceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 568999999999999999999877432 56777888776544433332 2478999994 2222 35677788
Q ss_pred EEEEecCCCCh-hhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhccc
Q 011620 406 NVVNYDKPAYI-KTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPL 453 (481)
Q Consensus 406 ~vI~~~~p~s~-~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~ 453 (481)
++|......-. ..+...+.+..+.-..+.-+++++..-...+..+.+.
T Consensus 147 ~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 195 (207)
T 2gxq_A 147 VAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAER 195 (207)
T ss_dssp EEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHH
T ss_pred EEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHH
Confidence 88876532110 0122222222222223455666666544444444433
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.15 E-value=0.61 Score=38.40 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.5
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
...+++.||+|+|||..+-.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~ 62 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEG 62 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 46799999999999987543
No 162
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=86.95 E-value=0.84 Score=49.86 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=34.6
Q ss_pred EEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 011620 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 73 iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (481)
+|.|+.|||||.+.+--+.+.+..+ ..+.++++++|+..-- ++.+.+.
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~-~~~~~il~lVP~q~TF-t~~~rl~ 52 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA-PFGKPIIFLVPDQMTF-LMEYELA 52 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC-TTSSCEEEECCGGGHH-HHHHHHT
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEecCcccH-HHHHHHH
Confidence 7899999999999887777777664 3445799999986433 3344443
No 163
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=86.82 E-value=0.39 Score=40.31 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=21.1
Q ss_pred HHHHHhhhCCCCCCCCEEEECCCCchHHHHhH
Q 011620 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 56 ~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~ 87 (481)
..++..+++..-..+.+++.||+|+|||..+.
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 34444555433223458999999999998753
No 164
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.73 E-value=0.69 Score=39.32 Aligned_cols=44 Identities=16% Similarity=-0.061 Sum_probs=28.4
Q ss_pred HHhhhC-CCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 59 ~~~~~~-~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
++.++. .+..|.-+++.+|+|+|||..+...+. . .+..++++.-
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~----~~~~v~~i~~ 53 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---L----SGKKVAYVDT 53 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---H----HCSEEEEEES
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---H----cCCcEEEEEC
Confidence 444453 344567789999999999987555433 1 1235777653
No 165
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=86.52 E-value=0.15 Score=46.95 Aligned_cols=33 Identities=18% Similarity=0.050 Sum_probs=22.2
Q ss_pred hHHHHHhhhCCCCCCCCEEEECCCCchHHHHhH
Q 011620 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 55 Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~ 87 (481)
|.+++..+...+..+.++++.||+|+|||..+-
T Consensus 32 ~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 32 QKYMINRLLIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHH
Confidence 444444333333347899999999999998643
No 166
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.48 E-value=0.91 Score=38.88 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=27.7
Q ss_pred HHhhhC-CCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 59 ~~~~~~-~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
++.+.. .+..|.-+++.||+|+|||..+...+...... +.+++++.
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~----~~~v~~~~ 58 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD----GDPCIYVT 58 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH----TCCEEEEE
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC----CCeEEEEE
Confidence 334443 34456778999999999998755433222221 22477665
No 167
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.47 E-value=0.68 Score=37.95 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=16.6
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
...+++.||+|+|||..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 46789999999999987544
No 168
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.12 E-value=0.71 Score=36.66 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=17.1
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 011620 68 FERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~ 87 (481)
.++.+.+.+|+|+|||..+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57889999999999998643
No 169
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.98 E-value=0.84 Score=40.24 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchHHHHh
Q 011620 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~ 86 (481)
+..+++.||+|+|||..+
T Consensus 29 ~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIA 46 (265)
T ss_dssp CSCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 578999999999999864
No 170
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.75 E-value=1.4 Score=43.00 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.+..++|.||||||||.+
T Consensus 259 ~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTT 276 (511)
T ss_dssp TTCCEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 377899999999999985
No 171
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.50 E-value=1.1 Score=40.73 Aligned_cols=60 Identities=8% Similarity=-0.247 Sum_probs=37.6
Q ss_pred HHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 011620 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 58 a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (481)
.++.+...+..|.-++|.|++|+|||..++..+...... +..++|++-- .-..|+...+.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~----g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT----TCEEEEEESS-SCHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc----CCeEEEEECC-CCHHHHHHHHH
Confidence 455556556667789999999999998766655544432 2357777633 22334444443
No 172
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.02 E-value=0.82 Score=39.64 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=31.4
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~ 122 (481)
.|.-+++.||+|+|||..++..+...... +.+++++..... ..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~----~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM----GEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT----TCCEEEEESSSC-HHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEccCC-HHHHHHHHH
Confidence 46778999999999999865544443322 335777764432 344444444
No 173
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=84.97 E-value=5.3 Score=40.45 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=58.3
Q ss_pred cCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEe
Q 011620 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (481)
Q Consensus 99 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~ 178 (481)
..+.++||.|+|+..++.+.+.+... |+++..++|+....+....+. .......+|+|+
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~-----------------~f~~g~~~VLVa 501 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIR-----------------DLRLGKYDVLVG 501 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHH-----------------HHHHTSCSEEEE
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHH-----------------HHhcCCeEEEEe
Confidence 34568999999999998888888765 788888888766554422211 112245789999
Q ss_pred CChhHHHhhhcCCCcccCCccEEEEecchhh
Q 011620 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 179 T~~~l~~~l~~~~~~~~~~~~~iViDE~H~~ 209 (481)
|. . . ..++++.+++++|+-+++..
T Consensus 502 T~-----~-l-~~GlDip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 502 IN-----L-L-REGLDIPEVSLVAILDADKE 525 (661)
T ss_dssp SC-----C-C-STTCCCTTEEEEEETTTTCC
T ss_pred cc-----h-h-hCCcccCCCCEEEEeCcccc
Confidence 83 1 1 24578888999999988754
No 174
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.91 E-value=1.3 Score=41.94 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=22.8
Q ss_pred chhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHh
Q 011620 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~ 86 (481)
.+-+..++..++. ..+.-++|.||||||||...
T Consensus 152 ~~~~~~~L~~l~~--~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 152 TAHNHDNFRRLIK--RPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp CHHHHHHHHHHHT--SSSEEEEEECSTTSCHHHHH
T ss_pred CHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHH
Confidence 3445566666542 33456889999999999863
No 175
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=84.87 E-value=11 Score=37.13 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=63.7
Q ss_pred chHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCcc
Q 011620 80 SGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159 (481)
Q Consensus 80 sGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (481)
..+....+..+...+... ..+.++||.|+++.-++.+++.+...... ++.+..++|+....+......
T Consensus 319 ~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~~~~---------- 386 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVK---------- 386 (563)
T ss_dssp THHHHHHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHH----------
T ss_pred HhhHHHHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHHHH----------
Confidence 344443333333333332 34557999999999999999888876442 678889999876655422211
Q ss_pred CCchhHHHhhccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecc
Q 011620 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~ 206 (481)
.......+|+|+|. .+. .++++.++++||.-..
T Consensus 387 -------~f~~g~~~vLvaT~-----~~~--~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 387 -------RFKKDESGILVCTD-----VGA--RGMDFPNVHEVLQIGV 419 (563)
T ss_dssp -------HHHHCSSEEEEECG-----GGT--SSCCCTTCCEEEEESC
T ss_pred -------HHhcCCCCEEEEcc-----hhh--cCCCcccCCEEEEECC
Confidence 11224578999993 222 4577888888876553
No 176
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.73 E-value=0.56 Score=41.38 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=17.0
Q ss_pred CCCCCEEEECCCCchHHHHhH
Q 011620 67 LFERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~~~ 87 (481)
..+.-++|.||||+|||...-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHH
Confidence 346778999999999998643
No 177
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.64 E-value=0.87 Score=39.20 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.9
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.||+|+|||..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 57899999999999987543
No 178
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=84.55 E-value=2 Score=36.76 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=53.9
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCC--cceEEEEccCccChHHHHHHHHHHhcCCceEEEeccc-c----c-ccCCCC
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M----T-RGMDVE 402 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~-l----~-~Gidi~ 402 (481)
.+.++||.+|++.-+..+.+.+.+.+. .+..+..++|+.+...+...+ ...+|+|+|.- + . ..+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 346899999999999999998887642 247788889988765543332 35789999952 2 1 235666
Q ss_pred CCCEEEEec
Q 011620 403 GVNNVVNYD 411 (481)
Q Consensus 403 ~~~~vI~~~ 411 (481)
.++++|...
T Consensus 166 ~~~~lViDE 174 (230)
T 2oxc_A 166 SIRLFILDE 174 (230)
T ss_dssp GCCEEEESS
T ss_pred cCCEEEeCC
Confidence 788888654
No 179
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=84.35 E-value=0.46 Score=44.29 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=16.9
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
...+++.||+|+|||..+-.
T Consensus 51 ~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56899999999999997543
No 180
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=83.98 E-value=1.6 Score=47.60 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=43.4
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhc--------cCCccEEEEcccHHHHHHHHHHHHHhc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRA--------VRCLRALVVLPTRDLALQVKDVFAAIA 125 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~--------~~~~~~lil~P~~~L~~q~~~~~~~~~ 125 (481)
...+|.|+-|||||++...-++..+...+ ....++|+||=|++-+.++.+.+....
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 44599999999999998887787775421 223479999999999998888876653
No 181
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=83.84 E-value=1.3 Score=42.34 Aligned_cols=48 Identities=10% Similarity=-0.220 Sum_probs=33.6
Q ss_pred HHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 58 a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
.++.++..+..|.-++|.|++|+|||..++-.+.+.... +.+++|++-
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~----g~~vl~fSl 233 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSL 233 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT----TCEEEEECS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc----CCEEEEEEC
Confidence 345556555567779999999999999877655554443 346888863
No 182
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=83.73 E-value=6.8 Score=35.12 Aligned_cols=75 Identities=21% Similarity=0.197 Sum_probs=51.5
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~ 180 (481)
+.++||.|+++.-++.+++.+... ++.+..++|+.........+. .......+|+|+|.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~-----------------~f~~g~~~vLVaT~ 86 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMG-----------------AFRQGEVRVLVATD 86 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHH-----------------HHHHTSCCEEEECS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHH-----------------HhhcCCceEEEEec
Confidence 447999999999888877777654 788999999877655432211 11224478999992
Q ss_pred hhHHHhhhcCCCcccCCccEEEE
Q 011620 181 GRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVi 203 (481)
. . ..++++.++++||.
T Consensus 87 -----v-a-~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 87 -----V-A-ARGLDIPQVDLVVH 102 (300)
T ss_dssp -----T-T-TCSTTCCCCSEEEE
T ss_pred -----h-h-hcCccccceeEEEE
Confidence 1 1 24577778888775
No 183
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=83.70 E-value=4.5 Score=33.64 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=52.3
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCCc--ceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-c----cccc-CCCCC
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-A----MTRG-MDVEG 403 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~----l~~G-idi~~ 403 (481)
+.++||.+|++.-+..+.+.+.+.... +..+..++|+.+..+... .+ .+..+|+|+|. . +..+ .++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999998888765421 467788888877543322 22 34678999995 2 2233 45667
Q ss_pred CCEEEEec
Q 011620 404 VNNVVNYD 411 (481)
Q Consensus 404 ~~~vI~~~ 411 (481)
++++|...
T Consensus 147 ~~~lViDE 154 (206)
T 1vec_A 147 VQMIVLDE 154 (206)
T ss_dssp CCEEEEET
T ss_pred CCEEEEEC
Confidence 88888755
No 184
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.57 E-value=7.8 Score=36.39 Aligned_cols=76 Identities=24% Similarity=0.209 Sum_probs=53.2
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeC
Q 011620 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T 179 (481)
.+.++||.++++..++.+++.+... +..+..++|+....+...... .......+|+|+|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~-----------------~f~~g~~~vlvaT 333 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALH-----------------QFRSGKSPILVAT 333 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHHTSSCEEEEC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHH-----------------HHHcCCCCEEEEC
Confidence 4557999999999999888888765 788999999877655432211 1122457899999
Q ss_pred ChhHHHhhhcCCCcccCCccEEEE
Q 011620 180 PGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iVi 203 (481)
. .+. .++++.++++||.
T Consensus 334 ~-----~~~--~Gidip~v~~Vi~ 350 (417)
T 2i4i_A 334 A-----VAA--RGLDISNVKHVIN 350 (417)
T ss_dssp H-----HHH--TTSCCCCEEEEEE
T ss_pred C-----hhh--cCCCcccCCEEEE
Confidence 3 223 3477778888775
No 185
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=83.36 E-value=2.6 Score=35.91 Aligned_cols=77 Identities=8% Similarity=0.123 Sum_probs=51.5
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-c----cc-ccCCCCCC
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-A----MT-RGMDVEGV 404 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~----l~-~Gidi~~~ 404 (481)
.+.++||.+|++.-+..+.+.+.+....+..+..++|+.+...+.. .+. ...+|+|+|. . +. ..+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DIS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---Hhc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4568999999999999999999887555577888888766543332 223 3478999994 1 11 24567788
Q ss_pred CEEEEec
Q 011620 405 NNVVNYD 411 (481)
Q Consensus 405 ~~vI~~~ 411 (481)
+++|+..
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8888765
No 186
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=83.25 E-value=8.4 Score=39.01 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=56.8
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeC
Q 011620 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T 179 (481)
.+.++||.|+|+..++.+.+.+... |+++..++|+....+...... .......+|+|+|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~-----------------~f~~g~~~VLvaT 496 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIR-----------------DLRLGHYDCLVGI 496 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHH-----------------HHHTTSCSEEEES
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHH-----------------HhhcCCceEEEcc
Confidence 4558999999999998888888765 778888888766554422211 1122447899998
Q ss_pred ChhHHHhhhcCCCcccCCccEEEEecchhh
Q 011620 180 PGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iViDE~H~~ 209 (481)
. . . ..++++.+++++|+=+++..
T Consensus 497 ~-~-----l-~~GlDip~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 497 N-L-----L-REGLDIPEVSLVAILDADKE 519 (664)
T ss_dssp C-C-----C-CTTCCCTTEEEEEETTTTSC
T ss_pred C-h-----h-hcCccCCCCCEEEEeCCccc
Confidence 2 1 1 24577888999988887654
No 187
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=83.22 E-value=15 Score=36.52 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=57.3
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeC
Q 011620 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T 179 (481)
.+.++||.|+++.-++.+++.+...... ++.+..++|+....+...... .......+|+|+|
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~~~~-----------------~F~~g~~~vLVaT 348 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVK-----------------RFKKDESGILVCT 348 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHH-----------------HHHHCSSEEEEEC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHHHHH-----------------HhhcCCCeEEEEc
Confidence 4557999999999999999988876442 678899999876655422211 1122457899999
Q ss_pred ChhHHHhhhcCCCcccCCccEEEEecch
Q 011620 180 PGRLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iViDE~H 207 (481)
. .+. .++++.++++||.-..-
T Consensus 349 ~-----~~~--~GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 349 D-----VGA--RGMDFPNVHEVLQIGVP 369 (579)
T ss_dssp G-----GGT--SSCCCTTCCEEEEESCC
T ss_pred c-----hhh--cCCCcccCCEEEEcCCC
Confidence 3 222 45778888888876543
No 188
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=83.06 E-value=1.7 Score=39.78 Aligned_cols=48 Identities=13% Similarity=-0.084 Sum_probs=32.5
Q ss_pred HHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 58 a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
.++.+...+..|.-++|.|++|+|||..++-.+..... .+..++|++.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----~g~~Vl~fSl 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----DDRGVAVFSL 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----TTCEEEEEES
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEEeC
Confidence 34445555556777899999999999887665554443 2345777763
No 189
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=83.02 E-value=0.24 Score=48.19 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=21.5
Q ss_pred hHHHHHhhhCCCCCCCCEEEECCCCchHHHHh
Q 011620 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 55 Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~ 86 (481)
|.+++..+...+..+.++++.||+|+|||..+
T Consensus 27 q~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 27 RSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp CHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 33333333333334789999999999999853
No 190
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.94 E-value=1.2 Score=42.59 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
.+.+++.||+|+|||+.+-
T Consensus 243 prGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CSEEEECSCTTSSHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHH
Confidence 5789999999999998643
No 191
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=82.65 E-value=2.1 Score=36.86 Aligned_cols=78 Identities=10% Similarity=0.223 Sum_probs=47.7
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCC-cceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-----ccccc-CCCCC
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-MDVEG 403 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-----~l~~G-idi~~ 403 (481)
.+.++||.+|++.-+..+.+.+.+.+. .+..+...+|+.+.. ...+.+..+..+|+|+|. .+..+ +++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 346899999999999999998877642 235666667665432 233445567789999993 33333 56677
Q ss_pred CCEEEEec
Q 011620 404 VNNVVNYD 411 (481)
Q Consensus 404 ~~~vI~~~ 411 (481)
+.+||+..
T Consensus 174 ~~~lViDE 181 (237)
T 3bor_A 174 IKMFVLDE 181 (237)
T ss_dssp CCEEEEES
T ss_pred CcEEEECC
Confidence 88888765
No 192
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=82.50 E-value=3.4 Score=35.66 Aligned_cols=115 Identities=10% Similarity=0.094 Sum_probs=68.3
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcC-CcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-----cccc-cCCCCCC
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVEGV 404 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-----~l~~-Gidi~~~ 404 (481)
+.++||.+|++.-+..+.+.+.+.. ..+..+..++|+.+.......+. . ..+|+|+|. .+.. .+++..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 5579999999999998888776642 12367888888887655544433 2 478999994 2222 3567788
Q ss_pred CEEEEecCC----CChhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhccc
Q 011620 405 NNVVNYDKP----AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPL 453 (481)
Q Consensus 405 ~~vI~~~~p----~s~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~ 453 (481)
.++|+.... +.....+..+ .+.-....-+++++..-...+..+.+.
T Consensus 178 ~~lViDEah~l~~~~~~~~~~~i---~~~~~~~~q~~~~SAT~~~~~~~~~~~ 227 (242)
T 3fe2_A 178 TYLVLDEADRMLDMGFEPQIRKI---VDQIRPDRQTLMWSATWPKEVRQLAED 227 (242)
T ss_dssp CEEEETTHHHHHHTTCHHHHHHH---HTTSCSSCEEEEEESCCCHHHHHHHHH
T ss_pred cEEEEeCHHHHhhhCcHHHHHHH---HHhCCccceEEEEEeecCHHHHHHHHH
Confidence 888875532 1111112222 221123455666666544444444433
No 193
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=82.37 E-value=1.1 Score=43.07 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=17.3
Q ss_pred CCCCEEEECCCCchHHHHhHH
Q 011620 68 FERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~ 88 (481)
.++.+++.||+|+|||..+..
T Consensus 62 ~~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHH
Confidence 356899999999999987543
No 194
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.31 E-value=1.1 Score=42.05 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
.+.+++.||+|+|||+.+-
T Consensus 182 prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCCEEEESCSSSSHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHH
Confidence 5789999999999998643
No 195
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.21 E-value=0.99 Score=42.90 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
.+.+++.||+|||||+.+-
T Consensus 215 prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHH
Confidence 5789999999999998743
No 196
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=82.05 E-value=0.71 Score=38.76 Aligned_cols=20 Identities=35% Similarity=0.358 Sum_probs=15.7
Q ss_pred CEEEECCCCchHHHHhHHHH
Q 011620 71 DLCINSPTGSGKTLSYALPI 90 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i 90 (481)
-.++.|++|||||..+...+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46899999999999754433
No 197
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=81.87 E-value=1.5 Score=38.56 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=29.9
Q ss_pred CHHHHHHHHHcCCCCCchhhHH-HHHhhhCCCCC-CCCEEEECCCCchHHHHhH
Q 011620 36 DPRLKVALQNMGISSLFPVQVA-VWQETIGPGLF-ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~Q~~-a~~~~~~~~~~-~~~~iv~~~tGsGKT~~~~ 87 (481)
...+.+.|.-.|+. +.+.. ++..+++.... .+.+++.||+|+|||+.+.
T Consensus 72 ~n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34566777665653 34422 23444543312 2358999999999999755
No 198
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=81.80 E-value=1.2 Score=43.34 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=26.6
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEccc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~ 110 (481)
+.+++|.|+||||||...-..+...+........+++++=|.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 678999999999999875544444444332233344444444
No 199
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=81.77 E-value=1.1 Score=39.28 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998644
No 200
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=81.60 E-value=1.4 Score=39.91 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=15.3
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+++.||+|+|||..+..
T Consensus 40 ~~ll~G~~G~GKt~la~~ 57 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIA 57 (319)
T ss_dssp CEEEESSSSSSHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHH
Confidence 599999999999987543
No 201
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=81.58 E-value=1.2 Score=43.75 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=29.2
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~ 111 (481)
..+++|.|.||||||.+.-..+...+........+++++=|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 4689999999999999866555555544333344566665653
No 202
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=81.53 E-value=2.1 Score=41.09 Aligned_cols=49 Identities=12% Similarity=-0.128 Sum_probs=32.6
Q ss_pred HHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 58 a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
.++.++..+..|.-++|.|++|+|||..++..+...... .+..++|+..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g~~vl~~sl 237 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EGVGVGIYSL 237 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCCCEEEEES
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEEC
Confidence 345556555667778999999999998766655544432 1335887764
No 203
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=81.53 E-value=4.3 Score=34.72 Aligned_cols=119 Identities=11% Similarity=0.108 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCC-cceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cc----cc--cCCCC
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----TR--GMDVE 402 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l----~~--Gidi~ 402 (481)
.+.++||.+|++.-+..+.+.+.+.+. .+..+..++|+.+.......+ +..+|+|+|. .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 356899999999999999998887642 346778888887654433322 4678999994 22 22 35667
Q ss_pred CCCEEEEecCCCCh-hhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccc
Q 011620 403 GVNNVVNYDKPAYI-KTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLL 454 (481)
Q Consensus 403 ~~~~vI~~~~p~s~-~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~ 454 (481)
.++++|+.....-. ..|...+.+..+.-....-+++++..-...+..+.+.+
T Consensus 171 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp TCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred cccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 78888865532100 01122222222221234446666665444455544443
No 204
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.49 E-value=0.9 Score=41.01 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 011620 68 FERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~ 87 (481)
.++.+++.||+|+|||..+-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 35779999999999998644
No 205
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=81.44 E-value=1 Score=40.69 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchHHHHh
Q 011620 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~ 86 (481)
...+++.|++|+|||..+
T Consensus 25 ~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TSCEEEESCTTSCHHHHH
T ss_pred CCcEEEECCCCchHHHHH
Confidence 578999999999999864
No 206
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=81.37 E-value=2.1 Score=41.16 Aligned_cols=49 Identities=6% Similarity=-0.144 Sum_probs=33.0
Q ss_pred HHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 58 a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
.++.+...+..|.-++|.|++|+|||..++..+...... .+..++|+..
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g~~Vl~~s~ 240 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TNENVAIFSL 240 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SSCCEEEEES
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEEEC
Confidence 455566556667778999999999998866655444332 1335888763
No 207
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=81.36 E-value=0.97 Score=40.28 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 011620 68 FERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~ 87 (481)
....+++.||+|+|||..+-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 35779999999999998643
No 208
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=81.17 E-value=1.3 Score=42.34 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=30.5
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~ 115 (481)
..+++|.|+||+|||... ..++..+.. .+..++|+=|..+...
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~---~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLL---RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHH---TTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHH---CCCcEEEEeCCCchhH
Confidence 578999999999999974 334444433 2346888888877754
No 209
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=81.13 E-value=0.77 Score=38.29 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
++.+++.+|||+|||..++
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 5668999999999997643
No 210
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=80.95 E-value=1.3 Score=41.24 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=16.8
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
++.+++.||+|+|||..+-.
T Consensus 70 ~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46799999999999987544
No 211
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=80.93 E-value=3.5 Score=36.11 Aligned_cols=77 Identities=13% Similarity=0.194 Sum_probs=53.2
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCC-cceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-----ccc--ccCCCC
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT--RGMDVE 402 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-----~l~--~Gidi~ 402 (481)
.+.++||.+|++.-+..+++.+++... .+..+..+.|+........ .+..+ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 356799999999999999998887532 2356677778776544333 33334 78999993 122 246777
Q ss_pred CCCEEEEec
Q 011620 403 GVNNVVNYD 411 (481)
Q Consensus 403 ~~~~vI~~~ 411 (481)
.+.+||+..
T Consensus 201 ~l~~lViDE 209 (262)
T 3ly5_A 201 NLQCLVIDE 209 (262)
T ss_dssp TCCEEEECS
T ss_pred cCCEEEEcC
Confidence 888888755
No 212
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=80.82 E-value=2 Score=35.73 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=29.2
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
...++|..++|.|||.+++..++..+.. |.+|+|+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~----G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH----GKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT----TCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEE
Confidence 4679999999999999998877776644 45788883
No 213
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.73 E-value=0.84 Score=41.66 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.7
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
+-++|.||||+|||..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4578999999999987554
No 214
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.67 E-value=1.2 Score=42.36 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
.+.+++.||+|||||+.+-
T Consensus 215 prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5789999999999998743
No 215
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=80.44 E-value=8.2 Score=35.82 Aligned_cols=108 Identities=6% Similarity=0.140 Sum_probs=66.9
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCCc--ceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cc-----cccCCCCC
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM-----TRGMDVEG 403 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l-----~~Gidi~~ 403 (481)
+.++||.+|++.-+..+.+.+.+.... +..+..++|+.+..... +.+..+..+|+|+|. .+ ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHH---HHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999998888775321 47888899988765444 334557789999994 22 22356777
Q ss_pred CCEEEEecCCC--ChhhHHHHHhhhhcCCCCCcEEEEEeCC
Q 011620 404 VNNVVNYDKPA--YIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (481)
Q Consensus 404 ~~~vI~~~~p~--s~~~~~Q~~GR~~R~~~~g~~i~~~~~~ 442 (481)
+++||...... ....+...+-+..+.-....-+++++..
T Consensus 153 ~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 193 (391)
T 1xti_A 153 IKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 193 (391)
T ss_dssp CSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESS
T ss_pred cCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEee
Confidence 88888755321 1123333333333332334445555543
No 216
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=80.29 E-value=0.87 Score=37.69 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=13.9
Q ss_pred CCEEEECCCCchHHHH
Q 011620 70 RDLCINSPTGSGKTLS 85 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~ 85 (481)
+-++|.||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4588999999999984
No 217
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.16 E-value=2.1 Score=51.01 Aligned_cols=82 Identities=15% Similarity=0.078 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~ 114 (481)
|.+.+.+.+.+.|+ .+.+.+..=+-++.+...-...+++.||||+|||.++-. +...+..-......+.++-|..--.
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~-L~~al~~l~~~~~~~~~iNPKait~ 950 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV-YLEAIEQVDNIKSEAHVMDPKAITK 950 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH-HHHHHTTTTTCEEEEEEECTTTSCH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH-HHHHHHHhhCCCceEEEECCCCCch
Confidence 34556666677887 677766655555555555567799999999999998543 2222222111222355566654444
Q ss_pred HHHH
Q 011620 115 LQVK 118 (481)
Q Consensus 115 ~q~~ 118 (481)
.|.+
T Consensus 951 ~eLy 954 (3245)
T 3vkg_A 951 DQLF 954 (3245)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 4444
No 218
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=80.05 E-value=1.2 Score=36.67 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchHHHHh
Q 011620 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~ 86 (481)
++-+++.||+|+|||...
T Consensus 5 g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 667889999999999853
No 219
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=79.95 E-value=1.9 Score=40.61 Aligned_cols=41 Identities=17% Similarity=0.371 Sum_probs=28.2
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~ 112 (481)
.+.+++|.|+||+|||...-..+... .. .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~---~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YM---QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HT---TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HH---CCCEEEEEeCCcC
Confidence 36789999999999998755433333 22 3456888877654
No 220
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=79.91 E-value=1.4 Score=37.73 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=15.4
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+++.||+|+|||..+-.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp SEEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3589999999999986443
No 221
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.58 E-value=0.68 Score=42.67 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.2
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
++++.||+|+|||..+..
T Consensus 48 ~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp CEEEECSSSSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 389999999999987544
No 222
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.55 E-value=1.3 Score=39.85 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=15.4
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+++.||+|+|||..+-.
T Consensus 37 ~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp SEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4678899999999987443
No 223
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=79.54 E-value=1.1 Score=37.43 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=16.8
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
++.+++.|++|+|||..+-.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHH
Confidence 56789999999999987543
No 224
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=79.49 E-value=0.33 Score=44.09 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=15.8
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+++.||+|+|||..+-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 3689999999999987543
No 225
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=79.41 E-value=1 Score=40.39 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
.+.+++.||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5679999999999998643
No 226
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=79.40 E-value=1.2 Score=40.06 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
...+++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999998744
No 227
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=79.26 E-value=5.1 Score=32.69 Aligned_cols=59 Identities=5% Similarity=-0.080 Sum_probs=39.2
Q ss_pred hhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHH
Q 011620 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (481)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q 116 (481)
+-|..|+..++. ...+-.+|.++-|++|+...+-.++... ...|.++.+++|+..-...
T Consensus 37 ~~~~~a~~~l~~--s~~~~~iv~g~ggs~~~~~~~a~L~~~a---~~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 37 AGYSDAVSVLAQ--DRPSLAIVSGQGGAAGQRERVAELVMMA---REQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHH--HSCCEECCBCSSCSHHHHHHHHHHHHHH---HHTTCCEEEECSTTHHHHH
T ss_pred ccchhHHHHHhc--cCCceEEEecccchHHHHHHHHHHHHHH---HhcCeEEEEEcCchHHHHH
Confidence 457777776653 1124467899999999998544433322 2456689999999765543
No 228
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=79.18 E-value=0.97 Score=40.04 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=16.5
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
...+++.||+|+|||..+-.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 35799999999999987543
No 229
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=78.93 E-value=1.1 Score=40.48 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.1
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
.-++|.||||+|||..+..
T Consensus 4 ~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHH
Confidence 3467899999999987544
No 230
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.70 E-value=1.6 Score=41.20 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=29.9
Q ss_pred CCCCCCCCCHHHHHHHHHc--CCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhH
Q 011620 28 PLDHLPCLDPRLKVALQNM--GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 28 ~~~~~~~l~~~~~~~l~~~--~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~ 87 (481)
+++++-|+........... .+..|--++..- +...+.+++.||+|||||+.+-
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G-------i~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMG-------IKPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT-------CCCCSEEEEESSTTTTHHHHHH
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC-------CCCCCCCceECCCCchHHHHHH
Confidence 3666667665554433322 222333333211 1224779999999999998643
No 231
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=78.66 E-value=1.2 Score=36.59 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.5
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
.+.+++.|++|+|||..+-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45788999999999987544
No 232
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=78.58 E-value=1.2 Score=37.50 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCchHHHHh
Q 011620 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~ 86 (481)
.+.-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3566889999999999863
No 233
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=78.52 E-value=2.6 Score=37.71 Aligned_cols=49 Identities=10% Similarity=-0.022 Sum_probs=30.5
Q ss_pred HHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcc
Q 011620 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (481)
Q Consensus 58 a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P 109 (481)
++..+.-.+..|.-++|.||+|+|||..+...+.. +... .|..++++..
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~-~~~~--~G~~v~~~~~ 72 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ-WGTA--MGKKVGLAML 72 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH-HHHT--SCCCEEEEES
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH-HHHH--cCCeEEEEeC
Confidence 44555545556788999999999999875543332 2221 1335766653
No 234
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.45 E-value=1.1 Score=40.24 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=14.8
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
-++|.||||+|||..+..
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 467899999999987544
No 235
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=78.42 E-value=1.6 Score=48.76 Aligned_cols=45 Identities=20% Similarity=0.081 Sum_probs=33.3
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~ 117 (481)
|+-+.+.+|.|||||..++..+.+... .+..++|+.+-.+|...+
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~----~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEECTTSCCCHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh----cCCeEEEEecCCCCCHHH
Confidence 466889999999999987765555433 345799998877776553
No 236
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=78.39 E-value=1.6 Score=36.67 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=17.4
Q ss_pred CCCCCCEEEECCCCchHHHHh
Q 011620 66 GLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 66 ~~~~~~~iv~~~tGsGKT~~~ 86 (481)
...+.-+++.||+|+|||..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 445788999999999999853
No 237
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=78.38 E-value=1.1 Score=40.87 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
.+.+++.||+|+|||..+-
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3679999999999998644
No 238
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=78.33 E-value=1.8 Score=36.62 Aligned_cols=30 Identities=23% Similarity=0.014 Sum_probs=22.3
Q ss_pred hhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHh
Q 011620 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~ 86 (481)
..|..++..+- .|.-+.+.+|+|+|||...
T Consensus 10 ~g~~~~l~~i~----~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 10 LGQKHYVDAID----TNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHHHH----HCSEEEEECCTTSSTTHHH
T ss_pred HhHHHHHHhcc----CCCEEEEECCCCCCHHHHH
Confidence 34556666653 3788899999999999863
No 239
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=78.10 E-value=2.2 Score=38.28 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=23.5
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
++.+.+.+++|+|||.+....+. .+.. ..|.+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~-~l~~--~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA-ISML--EKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH-HHHH--TTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-HHHH--hcCCEEEEEe
Confidence 45688899999999998655333 2321 1233566664
No 240
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=77.96 E-value=2.4 Score=36.13 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=18.7
Q ss_pred CEEEECCCCchHHHHhHHHHHHHH
Q 011620 71 DLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
++++.++.|+|||.+++-.+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 588999999999998766554443
No 241
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=77.96 E-value=1.2 Score=40.70 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
.+.+++.||+|+|||..+-
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4679999999999998754
No 242
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=77.88 E-value=4.3 Score=40.49 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=52.1
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHH--hcCCceEEEecc
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF--REGKIQVLVSSD 393 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vLi~t~ 393 (481)
.+.+||.+|++.-++...+.+.+.+ +.+..++++.+..++..+...+ ..+..+|+++|.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG---ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT---CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5689999999999999999998876 8899999999998888888887 467899999996
No 243
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=77.84 E-value=10 Score=35.40 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=52.7
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~ 180 (481)
+.++||.|+++.-+..+++.+... +..+..++|+....+...... .......+|+|+|.
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~g~~~vlv~T~ 324 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIE-----------------RFREGKEKVLVTTN 324 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHH-----------------HHHCCCCcEEEEcC
Confidence 347999999999999888888776 778889999876655422211 11224478999992
Q ss_pred hhHHHhhhcCCCcccCCccEEEE
Q 011620 181 GRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iVi 203 (481)
.+. .++++.++++||.
T Consensus 325 -----~~~--~Gidip~~~~Vi~ 340 (412)
T 3fht_A 325 -----VCA--RGIDVEQVSVVIN 340 (412)
T ss_dssp -----GGT--SSCCCTTEEEEEE
T ss_pred -----ccc--cCCCccCCCEEEE
Confidence 222 4577888888874
No 244
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=77.82 E-value=0.97 Score=36.63 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=14.0
Q ss_pred CEEEECCCCchHHHHhH
Q 011620 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~ 87 (481)
-+++.|++|||||..+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999998643
No 245
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=77.72 E-value=4.1 Score=39.94 Aligned_cols=77 Identities=10% Similarity=0.109 Sum_probs=59.9
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-ccc-----ccCCCCCCC
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMT-----RGMDVEGVN 405 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l~-----~Gidi~~~~ 405 (481)
.+.+||.+|.+.-+....+.+.+.+ ..+..++++.+..++......+..|+.+++++|. .+. ..++...+.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG---VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 4689999999999999999998876 7888999999988888888889999999999984 221 112334556
Q ss_pred EEEEec
Q 011620 406 NVVNYD 411 (481)
Q Consensus 406 ~vI~~~ 411 (481)
.||+..
T Consensus 142 ~vViDE 147 (523)
T 1oyw_A 142 LLAVDE 147 (523)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 666543
No 246
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=77.61 E-value=1.9 Score=35.27 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.6
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.|++|+|||..+-.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHH
Confidence 56799999999999986443
No 247
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=77.53 E-value=1.3 Score=38.84 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
.+.+++.||+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3569999999999998643
No 248
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=77.40 E-value=1.1 Score=36.61 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
+.-+++.|++|+|||..+-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3567899999999998643
No 249
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=77.03 E-value=1.6 Score=40.85 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=16.6
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
...+++.||+|+|||..+-.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 46799999999999987543
No 250
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=76.98 E-value=12 Score=34.74 Aligned_cols=78 Identities=13% Similarity=0.230 Sum_probs=54.6
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhh-ccCCcEEEeC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~I~v~T 179 (481)
+.++||.++++.-++.+++.+... +..+..++|+....+..... +.+ ....+|+|+|
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~------------------~~f~~g~~~vlv~T 300 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLI------------------DDFREGRSKVLITT 300 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHH------------------HHHHTTSCCEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHH------------------HHHHCCCCCEEEEC
Confidence 457999999999999888888765 77889999987655442221 122 2347899999
Q ss_pred ChhHHHhhhcCCCcccCCccEEEEecch
Q 011620 180 PGRLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iViDE~H 207 (481)
. .+ ..++++.++++||.-+..
T Consensus 301 ~-----~~--~~Gidip~~~~Vi~~~~p 321 (395)
T 3pey_A 301 N-----VL--ARGIDIPTVSMVVNYDLP 321 (395)
T ss_dssp G-----GG--SSSCCCTTEEEEEESSCC
T ss_pred C-----hh--hcCCCcccCCEEEEcCCC
Confidence 2 22 245788889988865443
No 251
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=76.91 E-value=1.2 Score=36.84 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.|..+++.||+|+|||..
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466788999999999985
No 252
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=76.85 E-value=1.7 Score=51.03 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHcCCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHH
Q 011620 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~ 88 (481)
+.+.+.+.+.+.++ .+.+.+..-+-.+.+.......+++.||||+|||.++-.
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 44556777777787 566665443333333333357799999999999997544
No 253
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=76.84 E-value=1.5 Score=36.62 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=15.1
Q ss_pred CCCEEEECCCCchHHHHh
Q 011620 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~ 86 (481)
++-+.+.||+|+|||...
T Consensus 4 g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp -CCEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 677899999999999863
No 254
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=76.83 E-value=1.7 Score=40.19 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=16.6
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
.+.+++.||+|+|||..+-.
T Consensus 84 ~~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 46799999999999987543
No 255
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=76.69 E-value=1.4 Score=38.65 Aligned_cols=17 Identities=41% Similarity=0.241 Sum_probs=14.1
Q ss_pred EEEECCCCchHHHHhHH
Q 011620 72 LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~ 88 (481)
++|.||||||||..+..
T Consensus 4 i~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCcCHHHHHHH
Confidence 67899999999986543
No 256
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=76.59 E-value=2.1 Score=39.25 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
...+++.||+|+|||..+-
T Consensus 55 ~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCCEEEECSTTSSHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3679999999999998643
No 257
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=76.56 E-value=2.1 Score=38.47 Aligned_cols=117 Identities=10% Similarity=0.088 Sum_probs=67.3
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCC--cceEEEEccCccChHHHHHHHHHHhcCCceEEEeccc-c-----c-ccCCCC
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M-----T-RGMDVE 402 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~~-l-----~-~Gidi~ 402 (481)
..++||.+|++.-+..+.+.+...+. .+..+....++...... .....+|+|+|.- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 34799999999999999888877643 23566666665443211 1345689999952 2 1 246777
Q ss_pred CCCEEEEecCCCCh--hhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhccccc
Q 011620 403 GVNNVVNYDKPAYI--KTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLLL 455 (481)
Q Consensus 403 ~~~~vI~~~~p~s~--~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~~ 455 (481)
.+.++|+.....-. ..|...+-+..+.-....-+++++..-...+..+.+.+.
T Consensus 235 ~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l 289 (300)
T 3fmo_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV 289 (300)
T ss_dssp GCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHS
T ss_pred hceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHC
Confidence 89988876532111 123222223333223345566777655555554444433
No 258
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=76.49 E-value=1.8 Score=40.25 Aligned_cols=32 Identities=22% Similarity=0.125 Sum_probs=24.1
Q ss_pred HHHHHhhhCCCCCCCCEEEECCCCchHHHHhHH
Q 011620 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 56 ~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~ 88 (481)
.++++ +.-++..|+.+.+.+|+|+|||.....
T Consensus 162 iraID-~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 162 ARVLD-LASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp HHHHH-HHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred ceeee-eeeeecCCcEEEEecCCCCChhHHHHH
Confidence 34444 345677799999999999999987543
No 259
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=76.25 E-value=2.7 Score=39.05 Aligned_cols=49 Identities=16% Similarity=0.016 Sum_probs=31.0
Q ss_pred HHhhhC--CCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccH
Q 011620 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (481)
Q Consensus 59 ~~~~~~--~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~ 111 (481)
++.++. -+..+.-++|.+++|+|||..++..+...... +.+++|+..-.
T Consensus 62 LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~----g~~vlyi~~E~ 112 (366)
T 1xp8_A 62 LDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA----GGTCAFIDAEH 112 (366)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESSC
T ss_pred HHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC----CCeEEEEECCC
Confidence 344443 23345668899999999998866655443322 33588776543
No 260
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=75.85 E-value=2.4 Score=39.32 Aligned_cols=18 Identities=44% Similarity=0.613 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.|..++|.||||+|||..
T Consensus 174 ~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTL 191 (361)
T ss_dssp TTCCEEEEESSSSCHHHH
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 478999999999999985
No 261
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=75.75 E-value=1 Score=39.68 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
.+.+++.||+|+|||..+-.
T Consensus 44 ~~~vll~G~~GtGKT~la~~ 63 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKA 63 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 45689999999999987543
No 262
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=75.53 E-value=1.8 Score=36.21 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 011620 68 FERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~ 87 (481)
.+.-+.+.||+|+|||..+-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36678899999999998643
No 263
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.41 E-value=2.3 Score=39.18 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=15.0
Q ss_pred CCEEEECCCCchHHHHhH
Q 011620 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~ 87 (481)
..+++.||+|+|||..+-
T Consensus 37 ~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 349999999999998744
No 264
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=75.32 E-value=3.3 Score=40.45 Aligned_cols=58 Identities=5% Similarity=-0.116 Sum_probs=35.5
Q ss_pred HhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHH
Q 011620 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (481)
Q Consensus 60 ~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~ 121 (481)
+.++..+..|.-++|.|++|+|||..++-.+.+.... .+.+++|++--- -..|+...+
T Consensus 233 D~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~---~g~~vl~~s~E~-s~~~l~~r~ 290 (503)
T 1q57_A 233 NDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---MGKKVGLAMLEE-SVEETAEDL 290 (503)
T ss_dssp HHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---SCCCEEEEESSS-CHHHHHHHH
T ss_pred hHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh---cCCcEEEEeccC-CHHHHHHHH
Confidence 3445445566778999999999999866655544332 134588776432 233444443
No 265
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=75.31 E-value=3.7 Score=37.33 Aligned_cols=44 Identities=16% Similarity=-0.074 Sum_probs=27.1
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhh--ccCCccEEEEcccH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTR 111 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~--~~~~~~~lil~P~~ 111 (481)
.+.-++|.||+|+|||..++..+....... ...+.+++|+.-..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 345688999999999988666444322110 01134688876543
No 266
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=75.22 E-value=20 Score=34.12 Aligned_cols=99 Identities=19% Similarity=0.192 Sum_probs=58.6
Q ss_pred CCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeec--------CCchHHHHHHhh
Q 011620 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG--------QSSIADEISELI 149 (481)
Q Consensus 78 tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~~~~~ 149 (481)
..++|.....- ++...... ..+.++||.++++.-+..+.+.+... |+++..++| +....+..
T Consensus 340 ~~~~k~~~l~~-~l~~~~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~---- 409 (494)
T 1wp9_A 340 LDHPKMDKLKE-IIREQLQR-KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQK---- 409 (494)
T ss_dssp CSCHHHHHHHH-HHHHHHHH-CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHH----
T ss_pred CCChHHHHHHH-HHHHHhcc-CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHH----
Confidence 44566654333 33332211 23557999999999988888888776 788888888 33222221
Q ss_pred hcCccccCccCCchhHHHh-hccCCcEEEeCChhHHHhhhcCCCcccCCccEEEEecch
Q 011620 150 KRPKLEAGICYDPEDVLQE-LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~-~~~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iViDE~H 207 (481)
...+. .....+|+|+| +.+ . .++++.++++||+-+..
T Consensus 410 --------------~~~~~F~~~~~~vLv~T-~~~----~--~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 410 --------------LILDEFARGEFNVLVAT-SVG----E--EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp --------------HHHHHHHHTSCSEEEEC-GGG----G--GGGGSTTCCEEEESSCC
T ss_pred --------------HHHHHHhcCCceEEEEC-Ccc----c--cCCCchhCCEEEEeCCC
Confidence 11111 22447899999 222 2 34777778888866544
No 267
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=75.17 E-value=15 Score=34.77 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=51.9
Q ss_pred cEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChh
Q 011620 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (481)
Q Consensus 103 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~ 182 (481)
++||.|+++.-++.+++.+... ++.+..++|+....+....+. +......+|+|+|.
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~-----------------~F~~g~~~vLvaT~-- 358 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALR-----------------DFKNGSMKVLIATS-- 358 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHH-----------------HHHTSSCSEEEECG--
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHH-----------------HHHcCCCcEEEEch--
Confidence 4999999999999888888765 788999999876655432211 11224578999993
Q ss_pred HHHhhhcCCCcccCCccEEEE
Q 011620 183 LMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 183 l~~~l~~~~~~~~~~~~~iVi 203 (481)
.+. .++++.++++||.
T Consensus 359 ---v~~--rGlDi~~v~~VI~ 374 (434)
T 2db3_A 359 ---VAS--RGLDIKNIKHVIN 374 (434)
T ss_dssp ---GGT--SSCCCTTCCEEEE
T ss_pred ---hhh--CCCCcccCCEEEE
Confidence 222 4578888888875
No 268
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=75.15 E-value=1.8 Score=36.24 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCchHHHHh
Q 011620 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~ 86 (481)
.|.-+.+.||+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 3667889999999999853
No 269
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=74.98 E-value=2 Score=42.92 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=14.1
Q ss_pred CEEEECCCCchHHHH
Q 011620 71 DLCINSPTGSGKTLS 85 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~ 85 (481)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999985
No 270
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=74.95 E-value=1.9 Score=34.79 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchHHHHh
Q 011620 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~ 86 (481)
+..+.+.|++|+|||..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999864
No 271
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=74.93 E-value=1.1 Score=36.34 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchHHHHh
Q 011620 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~ 86 (481)
|.-+.+.||+|+|||..+
T Consensus 9 gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 566889999999999853
No 272
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=74.64 E-value=1.5 Score=40.91 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 011620 68 FERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~ 87 (481)
.+..++|.||||+|||...-
T Consensus 135 ~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678999999999998643
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=74.56 E-value=1.3 Score=36.00 Aligned_cols=17 Identities=24% Similarity=0.084 Sum_probs=14.0
Q ss_pred CEEEECCCCchHHHHhH
Q 011620 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~ 87 (481)
-+++.|++|||||..+-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 46889999999998643
No 274
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=74.49 E-value=1.9 Score=35.48 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
+..+++.|++|+|||.++-
T Consensus 10 ~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5678999999999998643
No 275
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=74.41 E-value=17 Score=33.70 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=52.8
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~ 180 (481)
+.++||.++++.-++.+++.+... +..+..++|+....+...... .......+|+|+|.
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFH-----------------EFRQGKVRTLVCSD 316 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSSSEEEESS
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHH-----------------HHhcCCCcEEEEcC
Confidence 447999999999999888888776 778888998876554422211 11223478999992
Q ss_pred hhHHHhhhcCCCcccCCccEEEEec
Q 011620 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iViDE 205 (481)
.+ ..++++.++++||.-+
T Consensus 317 -----~~--~~Gidip~~~~Vi~~~ 334 (400)
T 1s2m_A 317 -----LL--TRGIDIQAVNVVINFD 334 (400)
T ss_dssp -----CS--SSSCCCTTEEEEEESS
T ss_pred -----cc--ccCCCccCCCEEEEeC
Confidence 11 2457787888877543
No 276
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=74.39 E-value=3.8 Score=35.33 Aligned_cols=24 Identities=25% Similarity=0.052 Sum_probs=18.7
Q ss_pred CCCCCCEEEECCCCchHHHHhHHH
Q 011620 66 GLFERDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 66 ~~~~~~~iv~~~tGsGKT~~~~~~ 89 (481)
+..|.-+.+.||+|+|||..+...
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i 50 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHH
Confidence 334778899999999999875543
No 277
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=74.37 E-value=11 Score=34.34 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=52.2
Q ss_pred CCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeC
Q 011620 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (481)
Q Consensus 100 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T 179 (481)
.+.+++|.++++.-+..+++.+... +..+..++|+....+...... .......+|+|+|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~~~~~vlv~T 295 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIR-----------------LFKQKKIRILIAT 295 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHH-----------------HHHTTSSSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEC
Confidence 3457999999999999888888775 778889998876554422111 1122347899999
Q ss_pred ChhHHHhhhcCCCcccCCccEEEEec
Q 011620 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iViDE 205 (481)
. .+ . .++++.++++||.-+
T Consensus 296 ~-~~----~--~Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 296 D-VM----S--RGIDVNDLNCVINYH 314 (367)
T ss_dssp T-TH----H--HHCCCSCCSEEEESS
T ss_pred C-hh----h--cCCCcccCCEEEEec
Confidence 2 22 2 235666778877643
No 278
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=74.19 E-value=1.6 Score=40.46 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=17.9
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
+..++|.||||||||...- .++..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~-~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLA-AMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHH-HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH-HHHhcc
Confidence 4568899999999998633 244433
No 279
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=74.14 E-value=2.3 Score=35.78 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=15.2
Q ss_pred CCCCEEEECCCCchHHHHh
Q 011620 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~ 86 (481)
.+.-+.|.||+|+|||..+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556789999999999853
No 280
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=74.12 E-value=1.9 Score=39.08 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.1
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.++|.||||+|||..+..
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999987544
No 281
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=74.10 E-value=2 Score=35.84 Aligned_cols=17 Identities=18% Similarity=0.433 Sum_probs=15.1
Q ss_pred CCCEEEECCCCchHHHH
Q 011620 69 ERDLCINSPTGSGKTLS 85 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~ 85 (481)
++-+++.||+|+|||..
T Consensus 19 g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CCEEEEECcCCCCHHHH
Confidence 66788999999999985
No 282
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=74.10 E-value=2.2 Score=36.28 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.|+-+.+.||+|+|||..
T Consensus 22 ~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477889999999999985
No 283
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=73.99 E-value=18 Score=31.05 Aligned_cols=119 Identities=9% Similarity=0.071 Sum_probs=68.8
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcC-CcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cc----cc-cCCCCCC
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----TR-GMDVEGV 404 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l----~~-Gidi~~~ 404 (481)
+.++||.+|++.-+..+.+.+.+.. ..+..+..++|+.+....... . ....+|+|+|. .+ .. .+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 3589999999999999988887653 224667778887765443322 2 24578999994 22 22 3567778
Q ss_pred CEEEEecCCC----C-hhhHHHHHhhhhcCCCCCcEEEEEeCCcchhhhhhcccc
Q 011620 405 NNVVNYDKPA----Y-IKTYIHRAGRTARAGQLGRCFTLLHKDEVCLVGCLTPLL 454 (481)
Q Consensus 405 ~~vI~~~~p~----s-~~~~~Q~~GR~~R~~~~g~~i~~~~~~~~~~~~~i~~~~ 454 (481)
+++|+..... + ...+...+.+.........-+++++..-...+..+.+.+
T Consensus 176 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~ 230 (253)
T 1wrb_A 176 KYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADF 230 (253)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHH
T ss_pred CEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHH
Confidence 8888755321 1 122333333221111124456666665544455444433
No 284
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=73.93 E-value=1.8 Score=40.05 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=16.5
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
.+.+++.||+|+|||..+-.
T Consensus 117 ~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46799999999999987543
No 285
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=73.78 E-value=2.4 Score=39.42 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.7
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.||+|+|||..+-.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56799999999999987443
No 286
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=73.64 E-value=2.1 Score=39.52 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=22.3
Q ss_pred hhHHHHHhhhC----CCCCCCC--EEEECCCCchHHHHhH
Q 011620 54 VQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 54 ~Q~~a~~~~~~----~~~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
-|.+++..+.. .+..|-+ ++.-|.||||||++..
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 46666654432 2234644 6679999999999853
No 287
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=73.60 E-value=2.2 Score=35.13 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=14.1
Q ss_pred CCEEEECCCCchHHHHh
Q 011620 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~ 86 (481)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45788999999999853
No 288
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=73.36 E-value=3.1 Score=37.99 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.++.+.|.||||+|||..
T Consensus 170 ~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HTCCEEEEESTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478899999999999984
No 289
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=73.30 E-value=1.9 Score=34.69 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.1
Q ss_pred CEEEECCCCchHHHHhH
Q 011620 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~ 87 (481)
.+++.|++|+|||..+-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999998644
No 290
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=73.08 E-value=15 Score=34.39 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=52.4
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCCh
Q 011620 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (481)
Q Consensus 102 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~ 181 (481)
.++||.|+++.-++.+++.+... ++.+..++|+....+...... .......+|+|+|.
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~-----------------~f~~g~~~vlv~T~- 334 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMK-----------------EFRSGASRVLISTD- 334 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHH-----------------HHHHTSSCEEEECG-
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHH-----------------HHHCCCCCEEEECC-
Confidence 37999999999999888888765 778899999876554422111 11224478999993
Q ss_pred hHHHhhhcCCCcccCCccEEEEec
Q 011620 182 RLMDHINATRGFTLEHLCYLVVDE 205 (481)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~iViDE 205 (481)
.+ ..++++.++++||.-+
T Consensus 335 ----~~--~~Gidi~~v~~Vi~~~ 352 (410)
T 2j0s_A 335 ----VW--ARGLDVPQVSLIINYD 352 (410)
T ss_dssp ----GG--SSSCCCTTEEEEEESS
T ss_pred ----hh--hCcCCcccCCEEEEEC
Confidence 22 2457788888887533
No 291
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=72.68 E-value=1.3 Score=44.43 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=17.7
Q ss_pred CCCCCEEEECCCCchHHHHhH
Q 011620 67 LFERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~~~ 87 (481)
..+..+++.+|+|+|||..+-
T Consensus 58 ~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 58 NQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HTTCCEEEECCTTSSHHHHHH
T ss_pred cCCCEEEEEeCCCCCHHHHHH
Confidence 347899999999999998644
No 292
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=72.67 E-value=2.2 Score=38.97 Aligned_cols=18 Identities=39% Similarity=0.292 Sum_probs=14.9
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
-++|.||||||||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 478999999999987544
No 293
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=72.64 E-value=2.5 Score=36.87 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.6
Q ss_pred CCEEEECCCCchHHHHh
Q 011620 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~ 86 (481)
+.+++.||+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 44999999999999864
No 294
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=72.58 E-value=2.4 Score=36.50 Aligned_cols=25 Identities=16% Similarity=-0.129 Sum_probs=19.3
Q ss_pred CCCCCEEEECCCCchHHHHhHHHHH
Q 011620 67 LFERDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~~~~~i~ 91 (481)
..|.-+.+.+|+|+|||..+...+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3467789999999999997665443
No 295
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=72.14 E-value=2.7 Score=38.15 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=23.1
Q ss_pred CchhhHHHHHhhhC----CCCCCCC--EEEECCCCchHHHHhH
Q 011620 51 LFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~----~~~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
+..-|.+++..+.. .+..|-+ ++.-|+||||||++..
T Consensus 54 ~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 34456665554322 2223644 6679999999999854
No 296
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=71.73 E-value=2.4 Score=35.37 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
+..+.+.||+|+|||..+-
T Consensus 29 g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5678899999999998643
No 297
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=71.63 E-value=1.9 Score=39.12 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
...+++.||+|+|||..+-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 298
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=71.36 E-value=1.6 Score=35.47 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
+..+.+.|++|+|||..+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999998643
No 299
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=71.31 E-value=2.9 Score=38.48 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=16.1
Q ss_pred CCCCC--EEEECCCCchHHHHhH
Q 011620 67 LFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 67 ~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
..|-+ ++.-|.||||||++..
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHHH
T ss_pred HCCcceeEEEeCCCCCCCceEeC
Confidence 34655 5679999999999853
No 300
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=71.25 E-value=2.8 Score=37.14 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.6
Q ss_pred CCEEEECCCCchHHHHh
Q 011620 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~ 86 (481)
+.+++.||+|+|||..+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 44999999999999863
No 301
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=71.13 E-value=3.9 Score=37.12 Aligned_cols=24 Identities=25% Similarity=0.140 Sum_probs=18.7
Q ss_pred CCCEEEECCCCchHHHHhHHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQ 92 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~ 92 (481)
+.-++|.|++|+|||..++..+.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 455789999999999986665544
No 302
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=71.00 E-value=2.8 Score=39.43 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=15.3
Q ss_pred CCC--EEEECCCCchHHHHhH
Q 011620 69 ERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~--~iv~~~tGsGKT~~~~ 87 (481)
|-+ ++.-|.||||||++..
T Consensus 139 G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 139 GYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp TCCEEEEEESCTTSSHHHHHH
T ss_pred CcceEEEEECCCCCCCceEeC
Confidence 654 5679999999999853
No 303
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=70.98 E-value=3.6 Score=42.43 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=30.5
Q ss_pred ccCCCCCCCCCCHHHHHHHHHc--CCCCCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHh
Q 011620 25 EDCPLDHLPCLDPRLKVALQNM--GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~l~~~--~~~~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~ 86 (481)
.+..++++-|+.+.+...-+.. .+..|.-++. + .....+.+++.||+|+|||+.+
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~------~-g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKA------I-GVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTS------C-CCCCCCEEEEECCTTSCHHHHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhh------c-CCCCCCeEEEECCCCCCHHHHH
Confidence 3445666667766554433221 1222222221 0 1122467999999999999864
No 304
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=70.97 E-value=2.2 Score=40.92 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
.+.+++.||+|+|||..+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3679999999999998644
No 305
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=70.77 E-value=2.2 Score=40.94 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=15.9
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
.+++++||+|+|||..+-.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 5699999999999986543
No 306
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=70.75 E-value=3.1 Score=37.90 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=15.3
Q ss_pred CCC--EEEECCCCchHHHHhH
Q 011620 69 ERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~--~iv~~~tGsGKT~~~~ 87 (481)
|-+ ++.-|+||||||++..
T Consensus 79 G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 79 GFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp TCCEEEEEESSTTSSHHHHHT
T ss_pred CCEEEEEeECCCCCCCcEEEe
Confidence 654 6679999999999853
No 307
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=70.74 E-value=2.7 Score=38.55 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=16.1
Q ss_pred CCCCC--EEEECCCCchHHHHhH
Q 011620 67 LFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 67 ~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
..|-+ ++.-|.||||||++..
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHHH
T ss_pred cCCceeEEEEECCCCCCCcEecc
Confidence 34654 5679999999999854
No 308
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=70.65 E-value=3.1 Score=38.34 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=23.2
Q ss_pred CchhhHHHHHhhh----CCCCCCCC--EEEECCCCchHHHHhH
Q 011620 51 LFPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 51 ~~~~Q~~a~~~~~----~~~~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
+..-|.+++..+. +.+..|-+ ++.-|+||||||++..
T Consensus 57 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 57 MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp TTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEee
Confidence 3445666555332 22334654 6679999999999853
No 309
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=70.62 E-value=4.4 Score=37.20 Aligned_cols=44 Identities=9% Similarity=-0.173 Sum_probs=27.2
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHHhh--ccCCccEEEEcccH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTR 111 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~--~~~~~~~lil~P~~ 111 (481)
.|.-++|.||+|+|||..++..+....... ...+.+++|+....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 345678999999999998665444322210 01244688886544
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=70.53 E-value=3 Score=34.19 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
+..+++.|++|+|||..+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 311
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=70.41 E-value=2.7 Score=35.28 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.|+-+.+.||+|+|||..
T Consensus 19 ~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp CCCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 377788999999999985
No 312
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=70.36 E-value=3.1 Score=38.17 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=23.3
Q ss_pred CchhhHHHHHhhhC----CCCCCCC--EEEECCCCchHHHHh
Q 011620 51 LFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~----~~~~~~~--~iv~~~tGsGKT~~~ 86 (481)
+..-|.+++..+.. .+..|-+ ++.-|.||||||++.
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 45567666654332 2223644 667999999999984
No 313
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=70.19 E-value=2.4 Score=39.65 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=14.7
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
-++|.||||+|||..+..
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 467899999999987554
No 314
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=70.15 E-value=3.2 Score=38.40 Aligned_cols=37 Identities=24% Similarity=0.172 Sum_probs=23.5
Q ss_pred CchhhHHHHHhhhC----CCCCCCC--EEEECCCCchHHHHhH
Q 011620 51 LFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~----~~~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
+..-|.+++..+.. .+..|-+ ++.-|.||||||++..
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEe
Confidence 44566666554332 2223644 6679999999999843
No 315
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=70.14 E-value=3.2 Score=38.27 Aligned_cols=37 Identities=24% Similarity=0.203 Sum_probs=24.2
Q ss_pred CchhhHHHHHhhh----CCCCCCCC--EEEECCCCchHHHHhH
Q 011620 51 LFPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 51 ~~~~Q~~a~~~~~----~~~~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
+..-|.+++..+. +.+..|-+ ++.-|+||||||++..
T Consensus 82 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 82 ETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp TTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 4455776665443 22334654 5679999999999853
No 316
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=70.12 E-value=2.6 Score=38.60 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.4
Q ss_pred CCEEEECCCCchHHHHhH
Q 011620 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~ 87 (481)
..+++.||+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 679999999999998643
No 317
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=70.11 E-value=3.4 Score=37.13 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=22.0
Q ss_pred HHHHhhhCCCCCCCCEEEECCCCchHHHHh
Q 011620 57 AVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 57 ~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~ 86 (481)
.++..+--.+..|+.+.|.||+|+|||...
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHH
Confidence 345444444556788999999999999853
No 318
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=69.94 E-value=5.1 Score=33.91 Aligned_cols=77 Identities=9% Similarity=0.189 Sum_probs=47.6
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcC-CcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cc-----cccCCCCC
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM-----TRGMDVEG 403 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l-----~~Gidi~~ 403 (481)
.+.++||.+|++.-+..+.+.+.+.. ..+..+..++|+.+..+.... + .+.+|+|+|. .+ ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEECHHHHHHHHHhCCcchhh
Confidence 34589999999999999988887653 234677788887665433222 2 2378999994 21 23456677
Q ss_pred CCEEEEecC
Q 011620 404 VNNVVNYDK 412 (481)
Q Consensus 404 ~~~vI~~~~ 412 (481)
+.+||+...
T Consensus 156 ~~~iViDEa 164 (224)
T 1qde_A 156 IKMFILDEA 164 (224)
T ss_dssp CCEEEEETH
T ss_pred CcEEEEcCh
Confidence 888887653
No 319
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=69.90 E-value=1.4 Score=40.58 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
...+++.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3569999999999998643
No 320
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=69.86 E-value=3.3 Score=38.01 Aligned_cols=36 Identities=28% Similarity=0.187 Sum_probs=23.1
Q ss_pred CchhhHHHHHhhhC----CCCCCCC--EEEECCCCchHHHHh
Q 011620 51 LFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~----~~~~~~~--~iv~~~tGsGKT~~~ 86 (481)
+..-|.+++..+.. .+..|-+ ++.-|+||||||++.
T Consensus 60 ~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 60 EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 44556666555332 2223644 567999999999985
No 321
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=69.82 E-value=3.2 Score=38.39 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=22.0
Q ss_pred hhhHHHHHhhhC----CCCCCCC--EEEECCCCchHHHHhH
Q 011620 53 PVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 53 ~~Q~~a~~~~~~----~~~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
.-|.+++..+.. ....|-+ ++.-|.||||||++..
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 346665554322 2223644 6679999999999853
No 322
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=69.73 E-value=2 Score=35.29 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.|++|||||..+-.
T Consensus 4 g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999986443
No 323
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=69.71 E-value=3.2 Score=35.10 Aligned_cols=76 Identities=9% Similarity=0.130 Sum_probs=49.3
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCCc-----ceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-----cccc-cCC
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMD 400 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-----~l~~-Gid 400 (481)
+.++||.+|++.-+..+.+.+.+.... +..+..++|+.+..... +.+ .+..+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999999888887665321 36677777776542211 111 23578999994 2223 345
Q ss_pred CCCCCEEEEec
Q 011620 401 VEGVNNVVNYD 411 (481)
Q Consensus 401 i~~~~~vI~~~ 411 (481)
+..++++|...
T Consensus 148 ~~~~~~lViDE 158 (219)
T 1q0u_A 148 VHTAHILVVDE 158 (219)
T ss_dssp GGGCCEEEECS
T ss_pred cCcceEEEEcC
Confidence 66788887654
No 324
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=69.69 E-value=2.8 Score=39.37 Aligned_cols=38 Identities=21% Similarity=0.057 Sum_probs=23.0
Q ss_pred CchhhHHHHHhhhC----CCCCCCC--EEEECCCCchHHHHhHH
Q 011620 51 LFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~----~~~~~~~--~iv~~~tGsGKT~~~~~ 88 (481)
+..-|.+++..+.. .+..|-+ ++.-|.||||||++...
T Consensus 131 ~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 131 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHC
T ss_pred cCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeec
Confidence 34456555554321 2223644 66799999999998543
No 325
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=69.55 E-value=2.7 Score=38.55 Aligned_cols=36 Identities=28% Similarity=0.177 Sum_probs=22.7
Q ss_pred CchhhHHHHHhhhCC----CCCCCC--EEEECCCCchHHHHh
Q 011620 51 LFPVQVAVWQETIGP----GLFERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~----~~~~~~--~iv~~~tGsGKT~~~ 86 (481)
+..-|.+++..+..+ +..|-+ ++.-|+||||||++.
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 444566665543322 223544 667999999999984
No 326
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=69.46 E-value=2.3 Score=36.27 Aligned_cols=22 Identities=23% Similarity=-0.016 Sum_probs=17.4
Q ss_pred CCCCCEEEECCCCchHHHHhHH
Q 011620 67 LFERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~~~~ 88 (481)
..|.-+.+.+|+|+|||..+..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3466788999999999986544
No 327
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=69.42 E-value=4.8 Score=36.51 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=22.4
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
+-+.+.+++|+|||.+....+. .+.. .+.+++++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~-~l~~---~g~kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMAN-YYAE---LGYKVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH-HHHH---TTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH---CCCeEEEEe
Confidence 4577899999999988655333 2322 234576664
No 328
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=69.39 E-value=1.9 Score=35.53 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+.-+++.|++|+|||..+-.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44578999999999986443
No 329
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=69.28 E-value=2.8 Score=33.73 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=16.1
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
+++++.|+.|||||.++-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 6789999999999987544
No 330
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=69.24 E-value=3.6 Score=34.93 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
.+-+++.||+|+||+..+-.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45577899999999986544
No 331
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=69.20 E-value=3 Score=38.62 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=23.1
Q ss_pred CchhhHHHHHhhhC----CCCCCCC--EEEECCCCchHHHHhH
Q 011620 51 LFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~----~~~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
+..-|.+++..+.. .+..|-+ ++.-|+||||||++..
T Consensus 78 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 78 WNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp TTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 44556666554332 2223644 5679999999999843
No 332
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=69.13 E-value=2.5 Score=41.05 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
...+++.||+|+|||..+-
T Consensus 238 ~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHH
Confidence 4679999999999998643
No 333
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=69.08 E-value=5.6 Score=35.79 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=22.2
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
+.-+.+.||+|+|||...-. +..+... .+.++++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~--Lagll~~--~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAK--LGRYYQN--LGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHH--HHHHHHT--TTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHH--HHHHHHh--cCCEEEEEe
Confidence 45677899999999986443 2222222 233566664
No 334
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=68.87 E-value=3.1 Score=38.21 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=22.5
Q ss_pred CchhhHHHHHhhhC----CCCCCCC--EEEECCCCchHHHHhH
Q 011620 51 LFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~----~~~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
+..-|.+++..+.. ....|-+ ++.-|+||||||++..
T Consensus 54 ~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 54 GNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp TTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 33445555554321 1223644 6679999999999853
No 335
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=68.72 E-value=3.7 Score=34.81 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.|++|||||..+-.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999986543
No 336
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=68.72 E-value=2.6 Score=35.16 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+.-+.+.||+|+|||..+-.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56688999999999986443
No 337
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=68.62 E-value=4.2 Score=33.29 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=24.5
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
++|.|++|||||..+...+ .. +..++|+......-..+.+.+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la----~~----~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI----GD----APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH----CS----CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH----hc----CCCeEEEecCCCCCHHHHHHHHHH
Confidence 5899999999998644322 11 334777776544333444445444
No 338
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=68.51 E-value=3.2 Score=38.27 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=21.9
Q ss_pred hhhHHHHHhhh----CCCCCCCC--EEEECCCCchHHHHhH
Q 011620 53 PVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 53 ~~Q~~a~~~~~----~~~~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
.-|.+++..+. +.+..|-+ ++.-|+||||||++..
T Consensus 71 a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 71 AGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred ccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 44665554332 22223654 5679999999999853
No 339
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=68.47 E-value=3.2 Score=38.64 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=25.3
Q ss_pred CchhhHHHHHhhhCC----CCCCCC--EEEECCCCchHHHHhH
Q 011620 51 LFPVQVAVWQETIGP----GLFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~----~~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
+..-|.+++..+..+ +..|-+ ++.-|+||||||++..
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 556687777654433 334654 5679999999999853
No 340
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=68.44 E-value=3.6 Score=39.67 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=16.8
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
..++++.||+|+|||..+-.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 46799999999999997544
No 341
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=68.43 E-value=3.2 Score=38.26 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=21.9
Q ss_pred hhhHHHHHhhhC----CCCCCCC--EEEECCCCchHHHHhH
Q 011620 53 PVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 53 ~~Q~~a~~~~~~----~~~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
.-|.+.+..+.. ....|-+ ++.-|+||||||++..
T Consensus 82 ~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 82 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEec
Confidence 346555554432 2223654 5668999999999843
No 342
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=68.39 E-value=3.8 Score=34.77 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
...+++.|++|+|||..+-.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999986443
No 343
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=68.23 E-value=3.2 Score=35.33 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=15.8
Q ss_pred CCCCCEEEECCCCchHHHH
Q 011620 67 LFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~ 85 (481)
..|+-+.|.||+|+|||..
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3477789999999999985
No 344
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=68.21 E-value=3.5 Score=36.47 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.6
Q ss_pred CCEEEECCCCchHHHHh
Q 011620 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~ 86 (481)
+.+++.+|+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 44999999999999864
No 345
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=67.72 E-value=5.6 Score=32.15 Aligned_cols=35 Identities=20% Similarity=-0.002 Sum_probs=21.0
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
.-+.+.++.|+|||..... ++..+.. .+.++-++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~-L~~~l~~---~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEK-WVAAAVR---EGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHH-HHHHHHH---TTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHH-HHHhhHh---cCCeeeEEE
Confidence 3467899999999986433 4444432 233454444
No 346
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=67.72 E-value=3 Score=34.77 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.2
Q ss_pred CCEEEECCCCchHHHHhH
Q 011620 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~ 87 (481)
..+++.|++|+|||..+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998643
No 347
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=67.63 E-value=2.6 Score=39.29 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.9
Q ss_pred CEEEECCCCchHHHHhH
Q 011620 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~ 87 (481)
.++|.||+|+|||..+-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999998743
No 348
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=67.62 E-value=3.6 Score=34.64 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=14.6
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+++.|++|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999986443
No 349
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=67.53 E-value=3.5 Score=38.84 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=14.8
Q ss_pred CCC--EEEECCCCchHHHHh
Q 011620 69 ERD--LCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~--~iv~~~tGsGKT~~~ 86 (481)
|-+ ++.-|.||||||++.
T Consensus 137 G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 137 GYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp TCCEEEEEESSTTSSHHHHH
T ss_pred CCceEEEEecCCCCCCeeEe
Confidence 644 567999999999985
No 350
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=67.49 E-value=3.5 Score=38.35 Aligned_cols=38 Identities=21% Similarity=0.057 Sum_probs=22.9
Q ss_pred CchhhHHHHHhhhC----CCCCCCC--EEEECCCCchHHHHhHH
Q 011620 51 LFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~----~~~~~~~--~iv~~~tGsGKT~~~~~ 88 (481)
+..-|.+++..+.. .+..|-+ ++.-|.||||||++...
T Consensus 111 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 111 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred cCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 34456555554322 1223644 66799999999999654
No 351
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=67.47 E-value=3.4 Score=33.45 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.1
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+++.+++|||||..+-.
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 688999999999986543
No 352
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=67.38 E-value=3.8 Score=34.42 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=14.6
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+++.||+|+||+..+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999987544
No 353
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=67.24 E-value=3.1 Score=38.37 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=22.8
Q ss_pred CchhhHHHHHhhhC----CCCCCCC--EEEECCCCchHHHHhH
Q 011620 51 LFPVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~----~~~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
+..-|.+++..+.. .+..|-+ ++.-|.||||||++..
T Consensus 65 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 65 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred ccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 34456555554332 2223644 6679999999999853
No 354
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=67.16 E-value=8.6 Score=41.36 Aligned_cols=79 Identities=10% Similarity=0.254 Sum_probs=59.1
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCC-cce----EEEEccCccChHHHHHHHHHHhcCCceEEEecc-cccccCC-CCC
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRI----KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMD-VEG 403 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~-~~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l~~Gid-i~~ 403 (481)
.+.++||.+|++.-+..+.+.+++... .+. .+..++|+.+...+....+.+.+ .+|+|+|. .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 456899999999999999988876532 235 78899999998887777777766 89999995 2222222 567
Q ss_pred CCEEEEec
Q 011620 404 VNNVVNYD 411 (481)
Q Consensus 404 ~~~vI~~~ 411 (481)
++++|+..
T Consensus 176 l~~lViDE 183 (1054)
T 1gku_B 176 FDFIFVDD 183 (1054)
T ss_dssp CSEEEESC
T ss_pred CCEEEEeC
Confidence 88888755
No 355
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=67.07 E-value=5.9 Score=37.68 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=23.6
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
..+++.+++|+|||.++...+...... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~----G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR----GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH----HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEe
Confidence 468899999999999866544333322 23577765
No 356
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=66.96 E-value=5.6 Score=41.02 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchHHHHh
Q 011620 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~ 86 (481)
.+.+++.||+|+|||+.+
T Consensus 511 ~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CSCCEEESSTTSSHHHHH
T ss_pred CceEEEecCCCCCchHHH
Confidence 467999999999999864
No 357
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=66.90 E-value=4 Score=38.84 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=23.0
Q ss_pred hhhHHHHHhhhC----CCCCCCC--EEEECCCCchHHHHhH
Q 011620 53 PVQVAVWQETIG----PGLFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 53 ~~Q~~a~~~~~~----~~~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
.-|.+++..+.. ....|-+ ++.-|.||||||++..
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 457766655432 2223644 6679999999999853
No 358
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=66.89 E-value=3.9 Score=33.98 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
+..+++.|+.|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 5668899999999998643
No 359
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=66.89 E-value=3.7 Score=38.05 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=15.4
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+++.||+|+|||..+-.
T Consensus 39 ~~~ll~G~~G~GKT~la~~ 57 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARL 57 (373)
T ss_dssp SEEEEESCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3478999999999987543
No 360
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=66.85 E-value=2.9 Score=35.01 Aligned_cols=19 Identities=32% Similarity=0.102 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCchHHHHh
Q 011620 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~ 86 (481)
.+.-+.|.|++|+|||..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556789999999999853
No 361
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=66.78 E-value=3.9 Score=33.40 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=15.5
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+++.|++|||||..+-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4588999999999986543
No 362
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=66.77 E-value=3.3 Score=34.05 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=14.3
Q ss_pred CCEEEECCCCchHHHHhH
Q 011620 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~ 87 (481)
.-+++.||+|+|||..+-
T Consensus 3 ~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 346789999999998643
No 363
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=66.74 E-value=2.2 Score=38.06 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.7
Q ss_pred CCEEEECCCCchHHHHhH
Q 011620 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~ 87 (481)
.-+++.||+|+|||..+-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 447889999999998643
No 364
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=66.52 E-value=3.4 Score=33.81 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.5
Q ss_pred CEEEECCCCchHHHHh
Q 011620 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~ 86 (481)
.+.+.||+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999863
No 365
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=66.44 E-value=6.3 Score=35.38 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
+.-+.+.||+|+|||...-. +...+.. .+.++++..
T Consensus 100 g~vi~lvG~nGsGKTTll~~-Lag~l~~---~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGK-LAHRLKN---EGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHH-HHHHHHH---TTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHH-HHHHHHH---cCCeEEEEe
Confidence 45578999999999987443 2222322 233576664
No 366
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=66.35 E-value=3.8 Score=33.79 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.|++|||||..+-.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45688999999999986443
No 367
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=66.16 E-value=4.1 Score=33.49 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=14.8
Q ss_pred CCEEEECCCCchHHHHhH
Q 011620 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~ 87 (481)
..+++.|++|||||..+-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998644
No 368
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=66.08 E-value=4 Score=38.85 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
.+++++.+|+|+|||..+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4679999999999998644
No 369
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=66.07 E-value=2.7 Score=36.28 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=16.0
Q ss_pred CCCCCEEEECCCCchHHHH
Q 011620 67 LFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~ 85 (481)
..|+-+.+.||+|+|||..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3477889999999999974
No 370
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=65.99 E-value=4.1 Score=33.70 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
|..+.+.+|+|+|||...-.
T Consensus 1 G~~i~i~G~nG~GKTTll~~ 20 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHK 20 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHH
Confidence 34678999999999986433
No 371
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=65.95 E-value=5.4 Score=34.71 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.|++|||||..+-.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34578999999999986443
No 372
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=65.87 E-value=3.1 Score=38.50 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=15.1
Q ss_pred CCC--EEEECCCCchHHHHhH
Q 011620 69 ERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~--~iv~~~tGsGKT~~~~ 87 (481)
|-+ ++.-|.||||||++..
T Consensus 78 G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 78 GYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp TCEEEEEEEECTTSSHHHHHT
T ss_pred CCceEEEEECCCCCCCeEeec
Confidence 654 5669999999999853
No 373
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=65.86 E-value=3.4 Score=38.32 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=23.0
Q ss_pred CchhhHHHHHhhhCC----CCCCCC--EEEECCCCchHHHHhH
Q 011620 51 LFPVQVAVWQETIGP----GLFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~----~~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
+..-|.+++..+..+ +..|-+ ++.-|.||||||++..
T Consensus 77 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 77 PESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred cccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 344566665543321 223544 6679999999999843
No 374
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=65.72 E-value=2.7 Score=36.04 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=11.3
Q ss_pred CCCEEEECCCCchHHHHh
Q 011620 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~ 86 (481)
|.-+.+.||+|+|||...
T Consensus 27 G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCEEEEECSCC----CHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 566889999999999853
No 375
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=65.69 E-value=3.6 Score=33.73 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=14.5
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+++.|++|+|||..+-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999986443
No 376
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=65.63 E-value=4.5 Score=34.62 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.|++|||||..+-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999987544
No 377
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=65.40 E-value=4.7 Score=36.53 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=13.1
Q ss_pred CEEEECCCCchHHHH
Q 011620 71 DLCINSPTGSGKTLS 85 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~ 85 (481)
-++|.|+.|+|||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 468899999999985
No 378
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=65.34 E-value=3.1 Score=40.13 Aligned_cols=19 Identities=32% Similarity=0.558 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
.+.+++.||+|+|||..+-
T Consensus 49 p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3569999999999998643
No 379
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=65.19 E-value=4.1 Score=32.75 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=15.3
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+++.|++|||||..+-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578999999999986443
No 380
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=65.01 E-value=5 Score=37.32 Aligned_cols=22 Identities=27% Similarity=0.125 Sum_probs=17.6
Q ss_pred CCCCCCCEEEECCCCchHHHHh
Q 011620 65 PGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 65 ~~~~~~~~iv~~~tGsGKT~~~ 86 (481)
.+..++.+++.||+|+|||..+
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHH
Confidence 3445677899999999999853
No 381
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=64.74 E-value=3.9 Score=37.93 Aligned_cols=37 Identities=27% Similarity=0.212 Sum_probs=23.5
Q ss_pred CchhhHHHHHhhh---CCCCCCCC--EEEECCCCchHHHHhH
Q 011620 51 LFPVQVAVWQETI---GPGLFERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 51 ~~~~Q~~a~~~~~---~~~~~~~~--~iv~~~tGsGKT~~~~ 87 (481)
+..-|.+++..+. +....|-+ ++.-|.||||||++..
T Consensus 93 ~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 93 PGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp TTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred CcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 4455666555432 23334654 5679999999999853
No 382
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.73 E-value=3.4 Score=40.45 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=16.1
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
+.+++.||+|+|||..+-.
T Consensus 78 ~~lLL~GppGtGKTtla~~ 96 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHL 96 (516)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 5799999999999987543
No 383
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=64.68 E-value=3.4 Score=35.26 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
...+++.|++|||||..+-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 384
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=64.63 E-value=3.7 Score=34.58 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=14.5
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+++.|++|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999986443
No 385
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=64.37 E-value=1.5 Score=45.51 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.3
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+++.||||+|||..+-.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~a 540 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARA 540 (758)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 499999999999997543
No 386
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=64.35 E-value=5 Score=33.32 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.4
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+++.|++|+|||..+-.
T Consensus 21 ~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999986443
No 387
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=63.90 E-value=3.9 Score=33.95 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=14.4
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+++.|++|+|||..+-.
T Consensus 2 ~I~i~G~~GsGKsT~~~~ 19 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAE 19 (205)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 367899999999986443
No 388
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=63.69 E-value=17 Score=34.62 Aligned_cols=69 Identities=19% Similarity=0.091 Sum_probs=45.1
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~ 180 (481)
+.+++|.||++.-++.+++.+... +.++..++|... ...... ......+|+|+|.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R-~~~~~~--------------------F~~g~~~vLVaT~ 231 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTF-EREYPT--------------------IKQKKPDFILATD 231 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSC-C----------------------------CCCSEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhH-HHHHhh--------------------hcCCCceEEEECC
Confidence 347999999999999988888876 778999998321 111111 1224579999992
Q ss_pred hhHHHhhhcCCCcccCCccEEE
Q 011620 181 GRLMDHINATRGFTLEHLCYLV 202 (481)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~iV 202 (481)
.+. .++++. +++||
T Consensus 232 -----v~e--~GiDip-v~~VI 245 (440)
T 1yks_A 232 -----IAE--MGANLC-VERVL 245 (440)
T ss_dssp -----STT--CCTTCC-CSEEE
T ss_pred -----hhh--eeeccC-ceEEE
Confidence 112 346677 77776
No 389
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=63.63 E-value=3.6 Score=36.43 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=19.3
Q ss_pred CCCCEEEECCCCchHHHHhHHHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~ 91 (481)
.|.-++|.||+|+|||..+...+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 477899999999999987665443
No 390
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=63.43 E-value=4.5 Score=33.83 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+.-+++.|++|||||..+-.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 44578999999999987543
No 391
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=63.36 E-value=3.2 Score=35.81 Aligned_cols=28 Identities=4% Similarity=-0.043 Sum_probs=19.4
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHH
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVL 222 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~ 222 (481)
..+.+++++||.=.-++......+...+
T Consensus 143 ~~~p~lllLDEPts~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 143 YSNADIYLFDDPLSAVDAHVGKHIFENV 170 (237)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHT
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 3456789999998877776665554444
No 392
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=63.30 E-value=2.7 Score=34.29 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=11.9
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.|++|||||..+-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45678999999999986443
No 393
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=63.20 E-value=4.9 Score=34.95 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=17.2
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.|++|+|||..+-.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 78899999999999986443
No 394
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=63.19 E-value=3.9 Score=33.54 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.|++|+|||..+-.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45678999999999987544
No 395
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=67.11 E-value=1.5 Score=35.54 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=46.2
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCCh
Q 011620 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (481)
Q Consensus 102 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~ 181 (481)
.++||.|+++..+..+++.+... ++.+..++|+....+...... .......+|+|+| +
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~-----------------~f~~g~~~vLvaT-~ 88 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIK-----------------RLTEGRVNVLVAT-D 88 (170)
Confidence 46999999999888877777655 677888888755433211110 1112346799998 2
Q ss_pred hHHHhhhcCCCcccCCccEEEEe
Q 011620 182 RLMDHINATRGFTLEHLCYLVVD 204 (481)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~iViD 204 (481)
.+ . .++++.++++||.-
T Consensus 89 ~~----~--~Gid~~~~~~Vi~~ 105 (170)
T 2yjt_D 89 VA----A--RGIDIPDVSHVFNF 105 (170)
Confidence 22 1 34556667766653
No 396
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=63.12 E-value=20 Score=34.75 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=48.1
Q ss_pred cEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhccCCcEEEeCChh
Q 011620 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (481)
Q Consensus 103 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~ 182 (481)
..++++.+..-+..+.+.+... +.++..++|+....+..... ........+|+|+|++.
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~-----------------~~f~~g~~~vLv~T~~~ 407 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMK-----------------TLAENGKGIIIVASYGV 407 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHH-----------------HHHHHCCSCEEEEEHHH
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHH-----------------HHHhCCCCCEEEEEcCh
Confidence 4555555555555555555543 45888888887655432111 11123457899999777
Q ss_pred HHHhhhcCCCcccCCccEEEEecch
Q 011620 183 LMDHINATRGFTLEHLCYLVVDETD 207 (481)
Q Consensus 183 l~~~l~~~~~~~~~~~~~iViDE~H 207 (481)
+.. ++++.++++||+....
T Consensus 408 ~~~------GiDip~v~~vi~~~~~ 426 (510)
T 2oca_A 408 FST------GISVKNLHHVVLAHGV 426 (510)
T ss_dssp HHH------SCCCCSEEEEEESSCC
T ss_pred hhc------ccccccCcEEEEeCCC
Confidence 643 3667788999988776
No 397
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=63.08 E-value=3.4 Score=32.59 Aligned_cols=15 Identities=33% Similarity=0.213 Sum_probs=13.2
Q ss_pred CEEEECCCCchHHHH
Q 011620 71 DLCINSPTGSGKTLS 85 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~ 85 (481)
-.+|.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 467899999999986
No 398
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=63.02 E-value=3.7 Score=33.69 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=15.1
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+++.|++|||||..+-.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3578899999999986443
No 399
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=62.80 E-value=4.8 Score=32.14 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=15.6
Q ss_pred CCCCCEEEECCCCchHHHH
Q 011620 67 LFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~ 85 (481)
..|.-+.+.+|.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3466788999999999974
No 400
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=62.73 E-value=3.4 Score=38.11 Aligned_cols=37 Identities=27% Similarity=0.178 Sum_probs=22.8
Q ss_pred CchhhHHHHHhhhCCC----C-CCCC--EEEECCCCchHHHHhH
Q 011620 51 LFPVQVAVWQETIGPG----L-FERD--LCINSPTGSGKTLSYA 87 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~----~-~~~~--~iv~~~tGsGKT~~~~ 87 (481)
+..-|.+++..+..++ . .|.+ ++.-|.||||||++..
T Consensus 60 ~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 60 DTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 3345655555433221 1 2544 6789999999999854
No 401
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=62.66 E-value=4.5 Score=33.39 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.|++|||||..+-.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45688999999999986433
No 402
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=62.45 E-value=4.1 Score=33.13 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
+..+.+.|++|+|||..+-
T Consensus 5 g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5567899999999998643
No 403
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=62.42 E-value=3.3 Score=36.27 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=15.5
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
.-++++|++|+|||..+-.
T Consensus 5 ~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 4578999999999987544
No 404
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=62.40 E-value=3.4 Score=34.08 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=14.1
Q ss_pred EEEECCCCchHHHHhHH
Q 011620 72 LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~ 88 (481)
+++.|+.|||||..+-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999987544
No 405
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=62.24 E-value=60 Score=28.31 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=39.7
Q ss_pred CCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHH
Q 011620 77 PTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADE 144 (481)
Q Consensus 77 ~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 144 (481)
...+||.....- ++..+.. .+.++||.+.+...+..+.+.+... .|+.+..++|+.+..+.
T Consensus 92 ~~~s~K~~~L~~-ll~~~~~---~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R 152 (271)
T 1z5z_A 92 VRRSGKMIRTME-IIEEALD---EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKER 152 (271)
T ss_dssp STTCHHHHHHHH-HHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHH
T ss_pred cccCHHHHHHHH-HHHHHHh---CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHH
Confidence 345778765332 3333322 3457999999998888777777652 26778888888765444
No 406
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=62.06 E-value=4.3 Score=36.74 Aligned_cols=23 Identities=17% Similarity=-0.028 Sum_probs=17.7
Q ss_pred CCCEEEECCCCchHHHHhHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~ 91 (481)
+..+++.+|+|+|||..++..+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45578999999999987665443
No 407
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=61.82 E-value=8 Score=43.43 Aligned_cols=42 Identities=19% Similarity=0.065 Sum_probs=31.0
Q ss_pred CCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccH
Q 011620 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (481)
Q Consensus 66 ~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~ 111 (481)
+..+..+++.+|+|+|||..++..+...+.. +.+++|++-..
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~~~----G~~vlYI~te~ 72 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEH 72 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEECTTS
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhC----CCceEEEEecC
Confidence 4456789999999999999877766655543 44688887544
No 408
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=61.81 E-value=4.6 Score=33.59 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=13.8
Q ss_pred CEEEECCCCchHHHHh
Q 011620 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~ 86 (481)
.+++.|++|||||..+
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999864
No 409
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=61.68 E-value=4.5 Score=34.33 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=14.9
Q ss_pred CCEEEECCCCchHHHHhH
Q 011620 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~ 87 (481)
..+.+.||+|||||..+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998644
No 410
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=61.65 E-value=8.5 Score=35.50 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
+.-+.+.||+|+|||.+.-. +...+.. .+.++++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~-Lag~l~~---~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGK-LAHRLKN---EGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHH-HHHHHHH---TTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHH-HHhhccc---cCCEEEEec
Confidence 44578999999999987443 3323322 233566664
No 411
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=61.57 E-value=4.7 Score=32.20 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=14.1
Q ss_pred CEEEECCCCchHHHHhH
Q 011620 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~ 87 (481)
.+++.|++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46899999999998644
No 412
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=61.55 E-value=6.4 Score=35.82 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+.-+.+.||+|+|||.+.-.
T Consensus 129 g~vi~lvG~nGaGKTTll~~ 148 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAK 148 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45578999999999986443
No 413
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=61.22 E-value=4.8 Score=33.69 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.|+.|||||..+-.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHH
Confidence 56688999999999987543
No 414
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=61.04 E-value=5 Score=33.75 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=14.6
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+++.|++|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999986443
No 415
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=61.00 E-value=4.5 Score=34.20 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=21.8
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhc
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~ 225 (481)
..+.+++++||-=.-++......+..++...
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 179 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 4567889999988877776666665555443
No 416
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=60.98 E-value=9.4 Score=34.57 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=12.9
Q ss_pred EEEECCCCchHHHHh
Q 011620 72 LCINSPTGSGKTLSY 86 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~ 86 (481)
+.+.||+|+|||..+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999999864
No 417
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=60.97 E-value=14 Score=34.49 Aligned_cols=33 Identities=18% Similarity=0.061 Sum_probs=25.6
Q ss_pred hhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHh
Q 011620 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~ 86 (481)
..=.++++. +.++.+|+...|.++.|+|||..+
T Consensus 160 ~tGiraID~-l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 160 IYSTRLIDL-FAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp CHHHHHHHH-HSCCBTTCEEEEEECTTCCHHHHH
T ss_pred hccchhhhh-cccccCCceEEEecCCCCChhHHH
Confidence 344456654 456778999999999999999875
No 418
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=60.94 E-value=3.9 Score=34.32 Aligned_cols=18 Identities=33% Similarity=0.161 Sum_probs=14.7
Q ss_pred CCCEEEECCCCchHHHHh
Q 011620 69 ERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~ 86 (481)
+.-+.+.||+|||||..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445778999999999853
No 419
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=60.71 E-value=5.7 Score=33.71 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=14.5
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+++.|++|||||..+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999986443
No 420
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=60.53 E-value=4.9 Score=32.96 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.0
Q ss_pred EEEECCCCchHHHHhHH
Q 011620 72 LCINSPTGSGKTLSYAL 88 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~ 88 (481)
+.+.|++|||||..+-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999986443
No 421
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=60.39 E-value=7.1 Score=36.65 Aligned_cols=42 Identities=10% Similarity=-0.147 Sum_probs=25.4
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhh--ccCCccEEEEccc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPT 110 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~--~~~~~~~lil~P~ 110 (481)
|.-+.|.+|+|+|||..+...++..+... ...+..++|+.-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 45688999999999987654333332211 1123457777543
No 422
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=60.38 E-value=5.3 Score=34.50 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
+..+.+.||+|+|||..+-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 423
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=60.21 E-value=4.8 Score=39.66 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.0
Q ss_pred CCCCEEEECCCCchHHHHhH
Q 011620 68 FERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~ 87 (481)
.+..+++.||+|+|||..+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56789999999999998643
No 424
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=60.20 E-value=5 Score=33.45 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.3
Q ss_pred EEEECCCCchHHHHhH
Q 011620 72 LCINSPTGSGKTLSYA 87 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~ 87 (481)
+.+.|++|||||..+-
T Consensus 5 i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998643
No 425
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=60.19 E-value=5.2 Score=33.81 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.|++|||||..+-.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34688999999999986443
No 426
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=59.97 E-value=3.9 Score=34.38 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.|++|+|||..+-.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56688899999999986443
No 427
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=59.81 E-value=4 Score=35.77 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=16.3
Q ss_pred CCCCCEEEECCCCchHHHH
Q 011620 67 LFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~ 85 (481)
..|+-+.+.||+|+|||..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577889999999999984
No 428
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=59.71 E-value=5.9 Score=33.11 Aligned_cols=77 Identities=12% Similarity=0.175 Sum_probs=46.3
Q ss_pred CCcEEEEcCCchhHHH-HHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cc----cc-------c
Q 011620 332 EEKCIVFTSSVESTHR-LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----TR-------G 398 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l----~~-------G 398 (481)
..++||+|++...++. +.+.+.+....+..+..++|+.....+...+. +..+|+|+|. .+ .. +
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccc
Confidence 5789999999888877 66666665444467888887765432221111 1467999884 22 12 2
Q ss_pred CCCCCCCEEEEecC
Q 011620 399 MDVEGVNNVVNYDK 412 (481)
Q Consensus 399 idi~~~~~vI~~~~ 412 (481)
+.+.++++||+...
T Consensus 158 ~~~~~~~~iIiDEa 171 (216)
T 3b6e_A 158 VQLSDFSLIIIDEC 171 (216)
T ss_dssp CCGGGCSEEEETTC
T ss_pred cchhcccEEEEECc
Confidence 45566777776553
No 429
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=59.65 E-value=8.4 Score=37.72 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=29.7
Q ss_pred HHHhhhC-CCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 58 a~~~~~~-~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
++..+.- .+..|..++|.+|+|+|||..+...++.-+... .. ..+++.
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~--g~i~v~ 75 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-DE--PGVFVT 75 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-CC--CEEEEE
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CC--CEEEEE
Confidence 4444443 445578899999999999987655334444432 12 255554
No 430
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=59.41 E-value=6.2 Score=34.06 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
...+++.||+|||||..+-.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 44688999999999986443
No 431
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=59.06 E-value=5.7 Score=34.56 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
+..+.|.||+|||||..+-
T Consensus 27 g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5668899999999998643
No 432
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=59.05 E-value=5.5 Score=33.35 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+.-+++.|+.|||||..+-.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 55688999999999987544
No 433
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=58.91 E-value=3.7 Score=33.33 Aligned_cols=18 Identities=33% Similarity=0.242 Sum_probs=14.2
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+.|.+++|+|||.....
T Consensus 4 ~v~IvG~SGsGKSTL~~~ 21 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITR 21 (171)
T ss_dssp EEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999986443
No 434
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=58.76 E-value=4.2 Score=35.66 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=20.5
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhc
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~ 225 (481)
..+.+++++||-=.-++......+..++...
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l 199 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQL 199 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 3456788888887777776666665555444
No 435
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=58.53 E-value=6.7 Score=40.53 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=18.9
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
..++++.||+|+|||..+-. +...+
T Consensus 201 ~~~vLL~G~pGtGKT~la~~-la~~l 225 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEG-LAQQI 225 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHH-HHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH-HHHHH
Confidence 46799999999999987544 34443
No 436
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=58.51 E-value=3.9 Score=33.34 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=13.2
Q ss_pred CEEEECCCCchHHHH
Q 011620 71 DLCINSPTGSGKTLS 85 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~ 85 (481)
-.+|.+|+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 567899999999985
No 437
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=58.50 E-value=64 Score=31.04 Aligned_cols=64 Identities=13% Similarity=0.021 Sum_probs=38.2
Q ss_pred HHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEE-c-ccHHHHHHHHHHHHHh
Q 011620 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-L-PTRDLALQVKDVFAAI 124 (481)
Q Consensus 56 ~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil-~-P~~~L~~q~~~~~~~~ 124 (481)
.++++. +-++-+|+...|.++.|+|||..++-.+.+ ....+..++|+ + -...-+.++.+.+..-
T Consensus 150 ikaID~-l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n----~~~~dv~~V~~~IGeR~~ev~e~~~~l~~~ 215 (513)
T 3oaa_A 150 YKAVDS-MIPIGRGQRELIIGDRQTGKTALAIDAIIN----QRDSGIKCIYVAIGQKASTISNVVRKLEEH 215 (513)
T ss_dssp CHHHHH-HSCCBTTCBCEEEESSSSSHHHHHHHHHHT----TSSSSCEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred eeeecc-ccccccCCEEEeecCCCCCcchHHHHHHHh----hccCCceEEEEEecCChHHHHHHHHHHhhc
Confidence 456665 446778999999999999999975433433 33334334333 2 2223344455555553
No 438
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=58.38 E-value=1.7 Score=44.95 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.9
Q ss_pred CEEEECCCCchHHHHhH
Q 011620 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~ 87 (481)
++++.||||+|||..+-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58999999999998754
No 439
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=58.29 E-value=9.2 Score=43.69 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=33.3
Q ss_pred HhhhC--CCCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEccc
Q 011620 60 QETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (481)
Q Consensus 60 ~~~~~--~~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~ 110 (481)
..++. -+..++.+++.+|+|+|||..++..+.+.+.. |.+++|++-.
T Consensus 1070 d~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~----Ge~~~Fit~e 1118 (2050)
T 3cmu_A 1070 DIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE 1118 (2050)
T ss_dssp HHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTT
T ss_pred HHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEEcc
Confidence 44452 34467889999999999999877666555433 5578888744
No 440
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=58.12 E-value=4.7 Score=35.68 Aligned_cols=31 Identities=16% Similarity=0.019 Sum_probs=21.8
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhc
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~ 225 (481)
..+.+++++||-=.-++......+..++...
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l 189 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 4567789999988777777666665555544
No 441
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=57.92 E-value=4.5 Score=35.35 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=22.2
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhc
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~ 225 (481)
..+.+++++||-=.-++......+..++...
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 192 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQA 192 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 4557789999988877777776666665544
No 442
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=57.91 E-value=4.9 Score=34.40 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.|+-+.+.||+|+|||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477888999999999984
No 443
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=57.90 E-value=5.1 Score=33.33 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.6
Q ss_pred CEEEECCCCchHHHHh
Q 011620 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~ 86 (481)
.+.|.|++|||||..+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678999999999864
No 444
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=57.89 E-value=4.6 Score=36.38 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=16.4
Q ss_pred CCCCCEEEECCCCchHHHH
Q 011620 67 LFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~ 85 (481)
..|+.+.|.||+|+|||..
T Consensus 78 ~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 3577899999999999984
No 445
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=57.86 E-value=12 Score=33.71 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=15.3
Q ss_pred CCCCEEEECCCCchHHHHh
Q 011620 68 FERDLCINSPTGSGKTLSY 86 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~ 86 (481)
.+.-+.|.||+|+|||..+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCchHHHHH
Confidence 3455778999999999864
No 446
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=57.81 E-value=4.5 Score=35.50 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.1
Q ss_pred CCCCCEEEECCCCchHHHH
Q 011620 67 LFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~ 85 (481)
..|+-+.+.||+|+|||..
T Consensus 48 ~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEEcCCCCcHHHH
Confidence 3577788999999999984
No 447
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=57.77 E-value=9.8 Score=36.14 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=23.0
Q ss_pred CEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
.+++.+++|+|||.+....+.. +... .|.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~-l~~~--~G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKF-LREK--HKKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH-HHHT--SCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHh--cCCeEEEEe
Confidence 4677899999999986664433 3321 144677765
No 448
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=57.64 E-value=5 Score=34.83 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.|+-+.+.||+|+|||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477889999999999984
No 449
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=57.58 E-value=5 Score=32.57 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=16.7
Q ss_pred CCCEEEECCCCchHHHHhHH
Q 011620 69 ERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~ 88 (481)
+..+++.++.|+|||..++.
T Consensus 16 G~gvli~G~SGaGKStlal~ 35 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLA 35 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHH
Confidence 67799999999999986443
No 450
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=57.58 E-value=3.8 Score=35.46 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.|+-+.+.||+|+|||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999984
No 451
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=57.54 E-value=4.2 Score=39.49 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.8
Q ss_pred CCEEEECCCCchHHHHh
Q 011620 70 RDLCINSPTGSGKTLSY 86 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~ 86 (481)
+.+++.+|+|+|||..+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999864
No 452
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=57.27 E-value=4.7 Score=35.59 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=21.6
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhc
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~ 225 (481)
+.+.+++++||-=.-++......+..++...
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 202 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYES 202 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 4456788888888777777766666665544
No 453
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=57.12 E-value=10 Score=33.82 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=22.5
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
++.+.+.+++|+|||.++...+. .+.. .+.+++++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~-~~~~---~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL-YYKG---KGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH-HHHH---TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH---cCCeEEEec
Confidence 45567789999999987555333 2222 233566664
No 454
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=57.08 E-value=4.7 Score=35.44 Aligned_cols=31 Identities=16% Similarity=0.033 Sum_probs=22.5
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhc
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~ 225 (481)
..+.+++++||--.-++......+..++...
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 184 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKW 184 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 4557789999988888877776666665544
No 455
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=56.60 E-value=5.3 Score=34.92 Aligned_cols=31 Identities=10% Similarity=-0.055 Sum_probs=20.7
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhc
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~ 225 (481)
..+.+++++||-=.-++......+..++...
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 199 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 3456788888887777776666665555544
No 456
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=56.51 E-value=5.2 Score=35.17 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.|+-+.+.||+|+|||..
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 477788999999999984
No 457
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=56.51 E-value=5.3 Score=34.45 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.|.-+.+.||+|+|||..
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999984
No 458
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=56.44 E-value=4.7 Score=37.39 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.6
Q ss_pred CEEEECCCCchHHHHh
Q 011620 71 DLCINSPTGSGKTLSY 86 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~ 86 (481)
-.+|.||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5678999999999753
No 459
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=56.29 E-value=19 Score=33.54 Aligned_cols=75 Identities=15% Similarity=0.260 Sum_probs=44.8
Q ss_pred CccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHHHHHHhhhcCccccCccCCchhHHHhhc-cCCcEEEeC
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~v~T 179 (481)
+.++||.++++.-++.+++.+... ++.+..++|+....+..... +.+. ...+|+|+|
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~------------------~~f~~g~~~vlv~T 337 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIM------------------REFRSGSSRVLITT 337 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHH------------------HHHSCC---CEEEC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHH------------------HHHHcCCCcEEEEC
Confidence 347999999999988888777654 77888888887655442221 1222 346899999
Q ss_pred ChhHHHhhhcCCCcccCCccEEEEe
Q 011620 180 PGRLMDHINATRGFTLEHLCYLVVD 204 (481)
Q Consensus 180 ~~~l~~~l~~~~~~~~~~~~~iViD 204 (481)
. .+ ..++++.++++||.-
T Consensus 338 ~-----~~--~~Gidip~v~~Vi~~ 355 (414)
T 3eiq_A 338 D-----LL--ARGIDVQQVSLVINY 355 (414)
T ss_dssp S-----SC--C--CCGGGCSCEEES
T ss_pred C-----cc--ccCCCccCCCEEEEe
Confidence 3 11 234677778877753
No 460
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=56.22 E-value=4.7 Score=34.37 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.4
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.|+-+.+.||+|+|||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999974
No 461
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=56.15 E-value=6.3 Score=34.63 Aligned_cols=30 Identities=13% Similarity=-0.026 Sum_probs=20.9
Q ss_pred CCccEEEEecchhhhhHhHHhHHHHHHHhc
Q 011620 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (481)
Q Consensus 196 ~~~~~iViDE~H~~~~~~~~~~~~~i~~~~ 225 (481)
.+.+++++||-=.-++......+..++...
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 210 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSL 210 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTT
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 456788888888777777766666665544
No 462
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=56.14 E-value=7.8 Score=35.64 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=20.5
Q ss_pred CCCCCCCCCCHHHHHHHHHcCCCC
Q 011620 27 CPLDHLPCLDPRLKVALQNMGISS 50 (481)
Q Consensus 27 ~~~~~~~~l~~~~~~~l~~~~~~~ 50 (481)
.+++.++|+++...+.|++.||.+
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t 58 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDT 58 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCS
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCc
Confidence 457788899999999999998875
No 463
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=56.10 E-value=30 Score=31.86 Aligned_cols=76 Identities=11% Similarity=0.219 Sum_probs=52.6
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcC-CcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cc----c-ccCCCCC
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----T-RGMDVEG 403 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l----~-~Gidi~~ 403 (481)
.+.++||.+|++.-+..+.+.+.+.. ..+..+..++|+.+..+....+. ..+|+|+|. .+ . ..+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 35689999999999999888887653 23477888888887655444333 357999983 21 2 2345567
Q ss_pred CCEEEEec
Q 011620 404 VNNVVNYD 411 (481)
Q Consensus 404 ~~~vI~~~ 411 (481)
+++||...
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 88888755
No 464
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=55.74 E-value=13 Score=35.68 Aligned_cols=40 Identities=15% Similarity=0.009 Sum_probs=28.4
Q ss_pred CchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHH
Q 011620 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~ 91 (481)
|-..=.++++. +-++-+|+...|.++.|+|||..++-.+.
T Consensus 145 pl~TGiraID~-l~PigrGQR~~Ifg~~g~GKT~Lal~~I~ 184 (502)
T 2qe7_A 145 PLQTGIKAIDS-MIPIGRGQRELIIGDRQTGKTTIAIDTII 184 (502)
T ss_dssp BCCCSCHHHHH-SSCCBTTCBCEEEECSSSCHHHHHHHHHH
T ss_pred ccccceeeccc-ccccccCCEEEEECCCCCCchHHHHHHHH
Confidence 33333466665 45677899999999999999987544344
No 465
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=55.63 E-value=12 Score=36.21 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=22.1
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEE
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil 107 (481)
+.-+.+.|++|+|||...-. +...+.. .+.++++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~-LAgll~~---~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGK-LARQFEQ---QGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHH-HHHHHHH---TTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHH-HHHHhhh---cCCeEEEe
Confidence 44578999999999986443 3323322 23357776
No 466
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=55.50 E-value=50 Score=32.04 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=53.8
Q ss_pred chHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHhccccCceEEEeecCCchHH--HHHHhhhcCccccC
Q 011620 80 SGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIAD--EISELIKRPKLEAG 157 (481)
Q Consensus 80 sGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~ 157 (481)
++|.....- ++...... ..+.++||.|+++.-++.+.+.+.......++.+..++|...... .....
T Consensus 370 ~~k~~~l~~-~l~~~~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------- 438 (555)
T 3tbk_A 370 NPKLRDLYL-VLQEEYHL-KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLP--------- 438 (555)
T ss_dssp CHHHHHHHH-HHHHHHHH-CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----------------------
T ss_pred CHHHHHHHH-HHHHHhcc-CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHH---------
Confidence 566655333 33332222 234579999999999999999998765433466666665322110 00000
Q ss_pred ccCCchhHHHhhc--cCCcEEEeCChhHHHhhhcCCCcccCCccEEEE
Q 011620 158 ICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 158 ~~~~~~~~~~~~~--~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iVi 203 (481)
......+.+. ...+|+|+|. . . ..++++.++++||.
T Consensus 439 ---~R~~~~~~F~~~g~~~vLvaT~-----~-~-~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 439 ---AQKCVLEAFRASGDNNILIATS-----V-A-DEGIDIAECNLVIL 476 (555)
T ss_dssp ----------------CCSEEEECC-----C-T-TCCEETTSCSEEEE
T ss_pred ---HHHHHHHHHhcCCCeeEEEEcc-----h-h-hcCCccccCCEEEE
Confidence 0011122223 3478999993 1 1 24578888888875
No 467
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=55.24 E-value=11 Score=33.69 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=22.2
Q ss_pred CCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
..+.+.+++|+|||.+....+.. +.. .+.+++++.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~-~~~---~g~~v~l~~ 133 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYF-YKK---KGFKVGLVG 133 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHH-HHH---TTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHH---CCCeEEEEe
Confidence 35677899999999876553332 222 233566664
No 468
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=55.24 E-value=5.2 Score=33.72 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=14.5
Q ss_pred CCEEEECCCCchHHHHhH
Q 011620 70 RDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~ 87 (481)
..+.|.|++|||||..+-
T Consensus 5 ~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357789999999998643
No 469
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=55.22 E-value=18 Score=36.81 Aligned_cols=79 Identities=14% Similarity=0.256 Sum_probs=47.3
Q ss_pred CccEEEEcccHHHHHHHHHHHHHh--ccccCceEEEeecC--------CchHHHHHHhhhcCccccCccCCchhHHHhhc
Q 011620 101 CLRALVVLPTRDLALQVKDVFAAI--APAVGLSVGLAVGQ--------SSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (481)
Q Consensus 101 ~~~~lil~P~~~L~~q~~~~~~~~--~~~~~~~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (481)
+.++||.++++..++.+++.+... ....|+++..++|+ ....+..... .+...
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~-----------------~~F~~ 462 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVI-----------------SKFRT 462 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHH-----------------HHHCC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHH-----------------HHHhc
Confidence 457999999999999988888764 22237888889887 4443332111 11122
Q ss_pred cCCcEEEeCChhHHHhhhcCCCcccCCccEEEE
Q 011620 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (481)
Q Consensus 171 ~~~~I~v~T~~~l~~~l~~~~~~~~~~~~~iVi 203 (481)
...+|+|+|. .. ..++++.++++||.
T Consensus 463 g~~~VLVaT~------~~-~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 463 GKINLLIATT------VA-EEGLDIKECNIVIR 488 (699)
T ss_dssp ---CCSEEEC------SC-CTTSCCCSCCCCEE
T ss_pred CCCcEEEEcc------cc-ccCCccccCCEEEE
Confidence 3478999992 11 24577888888774
No 470
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=54.96 E-value=6.3 Score=40.96 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=17.0
Q ss_pred CCCCCEEEECCCCchHHHHhH
Q 011620 67 LFERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~~~ 87 (481)
..++.+++.||+|+|||..+-
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHH
Confidence 346789999999999998643
No 471
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=54.87 E-value=5.9 Score=34.43 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.|+-+.+.||+|+|||..
T Consensus 25 ~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467788999999999984
No 472
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=54.86 E-value=11 Score=34.68 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.6
Q ss_pred CEEEECCCCchHHHHhH
Q 011620 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~ 87 (481)
++++.|++|+|||..+-
T Consensus 26 ~i~l~G~~G~GKTTl~~ 42 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAE 42 (359)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 38999999999998754
No 473
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=54.83 E-value=9.3 Score=31.88 Aligned_cols=16 Identities=31% Similarity=0.179 Sum_probs=13.5
Q ss_pred CCEEEECCCCchHHHH
Q 011620 70 RDLCINSPTGSGKTLS 85 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~ 85 (481)
.-.+|.||+|+|||..
T Consensus 24 ~~~~I~G~NgsGKSti 39 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEEcCCCCCHHHH
Confidence 3467899999999986
No 474
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=54.61 E-value=6.1 Score=32.68 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=14.1
Q ss_pred CEEEECCCCchHHHHhH
Q 011620 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~ 87 (481)
.+.|.+++|||||..+-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998643
No 475
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=54.24 E-value=13 Score=30.11 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=13.5
Q ss_pred CCEEEECCCCchHHHH
Q 011620 70 RDLCINSPTGSGKTLS 85 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~ 85 (481)
.-+.+.+++|+|||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 4577899999999975
No 476
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=53.99 E-value=12 Score=34.34 Aligned_cols=29 Identities=17% Similarity=0.081 Sum_probs=24.1
Q ss_pred HHHHHhhhCCCCCCCCEEEECCCCchHHHH
Q 011620 56 VAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 56 ~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~ 85 (481)
..+++.+ -.+..|+.+.+.+|.|+|||..
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTL 87 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTL 87 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHH
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHH
Confidence 4677776 4566789999999999999986
No 477
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=53.79 E-value=29 Score=33.89 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=49.3
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcCC-cceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cc----ccc-C-CCCC
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----TRG-M-DVEG 403 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l----~~G-i-di~~ 403 (481)
+.++||.+|++.-+..+.+.+.+... .++.+..++|+.+...+...+. ...+|+|+|. .+ ..+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 67899999999998888888776521 2478889999886544332221 1367999994 22 233 3 5667
Q ss_pred CCEEEEecC
Q 011620 404 VNNVVNYDK 412 (481)
Q Consensus 404 ~~~vI~~~~ 412 (481)
+++||+...
T Consensus 131 ~~~vViDEa 139 (556)
T 4a2p_A 131 FTLMIFDEC 139 (556)
T ss_dssp CSEEEEETG
T ss_pred CCEEEEECC
Confidence 888887653
No 478
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=53.79 E-value=16 Score=37.26 Aligned_cols=75 Identities=9% Similarity=0.138 Sum_probs=53.6
Q ss_pred CCCcEEEEcCCchhHHHHHHHHhhcCCcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-----cccccCC-CCCC
Q 011620 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRGMD-VEGV 404 (481)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-----~l~~Gid-i~~~ 404 (481)
.++++++.+|++.-+...++.++.....+.++...+|+....++ ..++.+|+|+|. .+..+.. +.++
T Consensus 67 ~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~ 139 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAV 139 (702)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGC
T ss_pred hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhc
Confidence 36799999999999999999886555455788888888765432 124688999994 2233333 5678
Q ss_pred CEEEEecC
Q 011620 405 NNVVNYDK 412 (481)
Q Consensus 405 ~~vI~~~~ 412 (481)
++||+...
T Consensus 140 ~~vIiDE~ 147 (702)
T 2p6r_A 140 SCLVVDEI 147 (702)
T ss_dssp CEEEETTG
T ss_pred CEEEEeee
Confidence 88887553
No 479
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=53.78 E-value=6.1 Score=34.41 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCchHHHH
Q 011620 68 FERDLCINSPTGSGKTLS 85 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~ 85 (481)
.|+-+.+.||+|+|||..
T Consensus 30 ~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp TTCEEEEECCSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999984
No 480
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=53.77 E-value=7 Score=33.73 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=15.0
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
+.-+.|.||.|+|||..+-
T Consensus 25 g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp SEEEEEECSTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4457789999999998643
No 481
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=53.73 E-value=9.6 Score=32.53 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCchHHHHhHH
Q 011620 68 FERDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~ 88 (481)
.+.-+++.|+.|+|||...-.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~ 45 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINE 45 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHH
Confidence 356688999999999986433
No 482
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=53.71 E-value=7.8 Score=32.06 Aligned_cols=18 Identities=17% Similarity=0.374 Sum_probs=14.4
Q ss_pred CEEEECCCCchHHHHhHH
Q 011620 71 DLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~~ 88 (481)
.+.+.|++|||||.++-.
T Consensus 14 iIgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999986443
No 483
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=53.21 E-value=11 Score=38.74 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=19.3
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTL 94 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l 94 (481)
.+.++++.||+|+|||..+-. +...+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~-la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEG-LAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHH-HHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHH-HHHHH
Confidence 356799999999999987544 33344
No 484
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=53.17 E-value=6.4 Score=34.88 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=20.6
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhc
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~ 225 (481)
..+.+++++||-=.-++......+..++...
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 207 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSL 207 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 3456788888887777776666655555443
No 485
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=53.04 E-value=8.4 Score=33.44 Aligned_cols=31 Identities=23% Similarity=0.137 Sum_probs=22.8
Q ss_pred cCCccEEEEecchhhhhHhHHhHHHHHHHhc
Q 011620 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLT 225 (481)
Q Consensus 195 ~~~~~~iViDE~H~~~~~~~~~~~~~i~~~~ 225 (481)
..+.+++++||--.-++......+..++...
T Consensus 159 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 189 (250)
T 2d2e_A 159 VLEPTYAVLDETDSGLDIDALKVVARGVNAM 189 (250)
T ss_dssp HHCCSEEEEECGGGTTCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 3456789999998888887777766666554
No 486
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=52.68 E-value=6 Score=35.38 Aligned_cols=17 Identities=24% Similarity=0.084 Sum_probs=14.2
Q ss_pred CEEEECCCCchHHHHhH
Q 011620 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~ 87 (481)
-+++.|++|||||..+-
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999998643
No 487
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=52.51 E-value=7.1 Score=32.46 Aligned_cols=19 Identities=32% Similarity=0.190 Sum_probs=15.0
Q ss_pred CCCEEEECCCCchHHHHhH
Q 011620 69 ERDLCINSPTGSGKTLSYA 87 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~ 87 (481)
+.-+.+.|++|+|||..+-
T Consensus 22 ~~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp SEEEEEEECTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457789999999998643
No 488
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=52.33 E-value=7.9 Score=34.51 Aligned_cols=17 Identities=29% Similarity=0.555 Sum_probs=14.0
Q ss_pred CEEEECCCCchHHHHhH
Q 011620 71 DLCINSPTGSGKTLSYA 87 (481)
Q Consensus 71 ~~iv~~~tGsGKT~~~~ 87 (481)
-+.|.|++|+|||..+-
T Consensus 33 ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999998753
No 489
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=52.12 E-value=16 Score=34.65 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=24.3
Q ss_pred HHHHHhhhCCCCCCCCEEEECCCCchHHHH
Q 011620 56 VAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 56 ~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~ 85 (481)
..++..+ -.+..|+.+.+.+|.|+|||..
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTL 173 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVL 173 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHH
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHH
Confidence 4577777 5677789999999999999986
No 490
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=52.06 E-value=12 Score=35.38 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=22.7
Q ss_pred CCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEc
Q 011620 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~ 108 (481)
+..+.+.+++|+|||.+....+. .+.. .+.+++++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~-~l~~---~g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL-YYKG---KGRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH-HHHT---TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH---cCCeEEEee
Confidence 34567789999999987655333 3322 234566664
No 491
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=51.81 E-value=6.8 Score=33.42 Aligned_cols=17 Identities=35% Similarity=0.360 Sum_probs=14.2
Q ss_pred CCCEEEECCCCchHHHH
Q 011620 69 ERDLCINSPTGSGKTLS 85 (481)
Q Consensus 69 ~~~~iv~~~tGsGKT~~ 85 (481)
|.-+.+.|+.|+|||..
T Consensus 20 g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CEEEEEECSTTSCHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45578899999999984
No 492
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=51.76 E-value=13 Score=35.89 Aligned_cols=35 Identities=17% Similarity=0.025 Sum_probs=26.4
Q ss_pred HHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHHHH
Q 011620 56 VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV 91 (481)
Q Consensus 56 ~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~i~ 91 (481)
.++++. +-++-+|+...|.++.|+|||..++-.+.
T Consensus 163 iraID~-l~PigrGQR~~I~g~~g~GKT~Lal~~I~ 197 (515)
T 2r9v_A 163 IKAIDS-MIPIGRGQRELIIGDRQTGKTAIAIDTII 197 (515)
T ss_dssp CHHHHH-HSCEETTCBEEEEEETTSSHHHHHHHHHH
T ss_pred cccccc-ccccccCCEEEEEcCCCCCccHHHHHHHH
Confidence 466665 44677799999999999999987544344
No 493
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=51.61 E-value=13 Score=31.80 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=50.1
Q ss_pred CCcEEEEcCCchhHHHHHHHHhhcC-CcceEEEEccCccChHHHHHHHHHHhcCCceEEEecc-cc----cc---cCCCC
Q 011620 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AM----TR---GMDVE 402 (481)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLi~t~-~l----~~---Gidi~ 402 (481)
+.++||.+|++.-+..+.+.+.+.. ..+..+..++++..... .......+..+|+|+|. .+ .. ++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 4479999999999999999887753 22356666665432211 11112245678999993 11 12 46778
Q ss_pred CCCEEEEecC
Q 011620 403 GVNNVVNYDK 412 (481)
Q Consensus 403 ~~~~vI~~~~ 412 (481)
++.++|+...
T Consensus 175 ~~~~lViDEa 184 (245)
T 3dkp_A 175 SVEWLVVDES 184 (245)
T ss_dssp TCCEEEESSH
T ss_pred cCcEEEEeCh
Confidence 8998887653
No 494
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=51.58 E-value=18 Score=29.92 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=22.9
Q ss_pred EEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEE-cccHHH
Q 011620 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-LPTRDL 113 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil-~P~~~L 113 (481)
+.++|+-|+|||...-. +.+++... |..+++. -|....
T Consensus 3 I~~EG~DGsGKsTq~~~-L~~~L~~~---g~~v~~treP~~t~ 41 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQL-LAQYLEKR---GKKVILKREPGGTE 41 (197)
T ss_dssp EEEECSTTSSHHHHHHH-HHHHHHHT---TCCEEEEESSCSSH
T ss_pred EEEECCCCCCHHHHHHH-HHHHHHHC---CCcEEEEECCCCCc
Confidence 46799999999987544 44555443 3335444 254433
No 495
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=51.50 E-value=31 Score=36.86 Aligned_cols=40 Identities=15% Similarity=-0.037 Sum_probs=24.3
Q ss_pred CCchhhHHHHHhhhCCCCCCCCEEEECCCCchHHHHhHHH
Q 011620 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALP 89 (481)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~iv~~~tGsGKT~~~~~~ 89 (481)
..|+-..+.+...+......+-+.|.|+.|.|||..+...
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~V 170 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHH
Confidence 3455555554444432112355788999999999976543
No 496
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=51.44 E-value=18 Score=30.72 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCchHHHHhHHHHHHHHH
Q 011620 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (481)
Q Consensus 68 ~~~~~iv~~~tGsGKT~~~~~~i~~~l~ 95 (481)
.|.-+++.|+.|+|||...-. +.+.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~-l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQW-FCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHH-HHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHHH
Confidence 356688999999999987544 444443
No 497
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=51.01 E-value=5.9 Score=35.31 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=16.2
Q ss_pred CCCCCEEEECCCCchHHHH
Q 011620 67 LFERDLCINSPTGSGKTLS 85 (481)
Q Consensus 67 ~~~~~~iv~~~tGsGKT~~ 85 (481)
..|+-+.+.||+|+|||..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3577788999999999984
No 498
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=50.96 E-value=18 Score=33.19 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=15.3
Q ss_pred CCEEEECCCCchHHHHhHH
Q 011620 70 RDLCINSPTGSGKTLSYAL 88 (481)
Q Consensus 70 ~~~iv~~~tGsGKT~~~~~ 88 (481)
..+.+.+++|+|||..+..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~ 98 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEA 98 (355)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999987444
No 499
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=50.91 E-value=5.2 Score=33.53 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=13.4
Q ss_pred EEEECCCCchHHHHhH
Q 011620 72 LCINSPTGSGKTLSYA 87 (481)
Q Consensus 72 ~iv~~~tGsGKT~~~~ 87 (481)
+++.|++|||||..+-
T Consensus 3 I~i~G~~GsGKsTl~~ 18 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVE 18 (214)
T ss_dssp EEEEEEEEEEHHHHHH
T ss_pred EEEEcCCCCCHHHHHH
Confidence 5789999999998643
No 500
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=50.83 E-value=17 Score=31.65 Aligned_cols=60 Identities=8% Similarity=-0.068 Sum_probs=33.3
Q ss_pred HhhhCC-CCCCCCEEEECCCCchHHHHhHHHHHHHHHhhccCCccEEEEcccHHHHHHHHHHHHHh
Q 011620 60 QETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (481)
Q Consensus 60 ~~~~~~-~~~~~~~iv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 124 (481)
+.++.- +..+..++|.+++|+|||..++..+.+.+. +|-++++++-... ..++.+.+..+
T Consensus 11 D~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~----~Ge~~~~~~~~e~-~~~l~~~~~~~ 71 (260)
T 3bs4_A 11 DREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLK----SDNLVGMFSISYP-LQLIIRILSRF 71 (260)
T ss_dssp HHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHH----TTCEEEEEECSSC-HHHHHHHHHHT
T ss_pred HHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHH----CCCcEEEEEEeCC-HHHHHHHHHHc
Confidence 344442 334566788878888887443333333333 3456888775433 34456666655
Done!