Query 011621
Match_columns 481
No_of_seqs 235 out of 907
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 11:56:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 1.3E-16 4.3E-21 131.1 4.4 67 289-355 6-72 (82)
2 4ati_A MITF, microphthalmia-as 99.6 5.8E-16 2E-20 135.2 7.4 72 277-348 15-89 (118)
3 1an4_A Protein (upstream stimu 99.5 4.4E-15 1.5E-19 116.3 3.4 56 287-342 3-63 (65)
4 1a0a_A BHLH, protein (phosphat 99.5 2.4E-15 8.1E-20 118.7 1.8 54 290-343 3-62 (63)
5 4h10_B Circadian locomoter out 99.5 8.2E-15 2.8E-19 118.8 4.0 57 290-346 9-65 (71)
6 1hlo_A Protein (transcription 99.5 7E-14 2.4E-18 113.8 6.2 62 290-352 13-76 (80)
7 1nkp_B MAX protein, MYC proto- 99.4 9.2E-14 3.2E-18 113.5 6.4 62 291-353 4-67 (83)
8 4h10_A ARYL hydrocarbon recept 99.4 1.1E-14 3.9E-19 118.2 0.9 51 289-340 9-63 (73)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 3.1E-13 1.1E-17 112.6 6.4 60 291-351 8-70 (88)
10 3u5v_A Protein MAX, transcript 99.3 4.8E-13 1.6E-17 109.3 3.6 57 290-346 6-65 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 1.3E-11 4.6E-16 101.4 7.6 61 291-352 3-66 (80)
12 4f3l_A Mclock, circadian locom 98.9 1E-09 3.6E-14 107.8 5.8 53 288-341 11-64 (361)
13 1mdy_A Protein (MYOD BHLH doma 98.9 1.5E-09 5.1E-14 87.1 4.9 53 291-343 14-67 (68)
14 2ql2_B Neurod1, neurogenic dif 98.8 2.8E-09 9.6E-14 83.5 5.6 52 292-343 5-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 2.6E-09 8.8E-14 106.5 3.4 52 289-341 13-68 (387)
16 2lfh_A DNA-binding protein inh 98.4 1.1E-07 3.9E-12 76.8 2.4 47 294-340 19-67 (68)
17 4ath_A MITF, microphthalmia-as 98.4 5.6E-07 1.9E-11 75.2 6.3 47 301-347 4-53 (83)
18 4aya_A DNA-binding protein inh 97.8 4E-05 1.4E-09 65.7 6.4 49 296-344 32-82 (97)
19 3coq_A Regulatory protein GAL4 47.6 13 0.00045 29.0 3.1 27 333-359 45-71 (89)
20 2wt7_A Proto-oncogene protein 46.3 42 0.0014 25.8 5.7 43 297-353 1-43 (63)
21 2er8_A Regulatory protein Leu3 43.2 17 0.00057 27.5 3.0 21 333-353 49-69 (72)
22 1zme_C Proline utilization tra 37.6 21 0.00073 26.6 2.8 21 333-353 44-64 (70)
23 2wuj_A Septum site-determining 36.3 37 0.0012 25.9 3.9 30 326-355 27-56 (57)
24 1pyi_A Protein (pyrimidine pat 33.9 35 0.0012 27.0 3.6 23 332-354 47-69 (96)
25 1hwt_C Protein (heme activator 32.2 21 0.00071 27.5 2.0 22 332-353 57-78 (81)
26 2oqq_A Transcription factor HY 26.2 20 0.0007 26.6 0.9 23 334-356 4-26 (42)
27 3sri_B Rhoptry NECK protein 2; 23.2 22 0.00075 24.4 0.5 12 115-126 8-19 (29)
28 2jee_A YIIU; FTSZ, septum, coi 22.7 72 0.0025 26.5 3.6 27 328-354 15-41 (81)
29 1dh3_A Transcription factor CR 21.6 61 0.0021 24.5 2.8 21 333-353 22-42 (55)
30 1f1f_A Cytochrome C6; heme, pr 20.4 1.6E+02 0.0056 21.7 5.0 40 301-341 48-87 (89)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.63 E-value=1.3e-16 Score=131.13 Aligned_cols=67 Identities=24% Similarity=0.361 Sum_probs=59.8
Q ss_pred CCCcchhHHHHHHHHHHHHHHHhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011621 289 ATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPR 355 (481)
Q Consensus 289 at~sHs~aERrRReKINer~~~LrsLVP~~~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~vnp~ 355 (481)
.+.+|+++||+||++||++|..|++|||++...++|++||++||+||++||.+++.|+.++..+...
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999984445999999999999999999999999988776543
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.61 E-value=5.8e-16 Score=135.18 Aligned_cols=72 Identities=31% Similarity=0.429 Sum_probs=51.1
Q ss_pred ccccccccccCCCCCcchhHHHHHHHHHHHHHHHhhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 011621 277 KDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNK---VTGKAVMLDEIINYVQSLQRQVEFLSMK 348 (481)
Q Consensus 277 ~~~i~~RaRRg~at~sHs~aERrRReKINer~~~LrsLVP~~~K---~tdKAsILdeAIdYIK~LQ~QVe~Le~k 348 (481)
++..+.++++.+++.+|+++||+||++||++|..|++|||.|.+ ..+|++||+.||+||++||.+++.|+..
T Consensus 15 ~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 15 ESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888999999999999999999999999999853 2489999999999999999999999864
No 3
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=4.4e-15 Score=116.28 Aligned_cols=56 Identities=25% Similarity=0.418 Sum_probs=49.8
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHhhhcCCCCCC-----CCCchhhHHHHHHHHHHHHHHH
Q 011621 287 GQATDSHSLAERVRREKISERMKFLQDLVPGCNK-----VTGKAVMLDEIINYVQSLQRQV 342 (481)
Q Consensus 287 g~at~sHs~aERrRReKINer~~~LrsLVP~~~K-----~tdKAsILdeAIdYIK~LQ~QV 342 (481)
...+..|+++||+||++||+.|..|++|||.|.. ..+|++||+.||+||+.||+++
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999862 2499999999999999999875
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.51 E-value=2.4e-15 Score=118.72 Aligned_cols=54 Identities=28% Similarity=0.452 Sum_probs=48.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHhhhcCCCCCC------CCCchhhHHHHHHHHHHHHHHHH
Q 011621 290 TDSHSLAERVRREKISERMKFLQDLVPGCNK------VTGKAVMLDEIINYVQSLQRQVE 343 (481)
Q Consensus 290 t~sHs~aERrRReKINer~~~LrsLVP~~~K------~tdKAsILdeAIdYIK~LQ~QVe 343 (481)
+++|.++||+||++||+.|..|+.|||.+.+ ..+||+||+.||+||++||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999999997632 23799999999999999998764
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.50 E-value=8.2e-15 Score=118.79 Aligned_cols=57 Identities=21% Similarity=0.404 Sum_probs=51.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 011621 290 TDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLS 346 (481)
Q Consensus 290 t~sHs~aERrRReKINer~~~LrsLVP~~~K~tdKAsILdeAIdYIK~LQ~QVe~Le 346 (481)
+.+|+++||+||++||++|..|++|||++....||++||+.||+||+.||.++..|+
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 358999999999999999999999999865334999999999999999999998875
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=7e-14 Score=113.77 Aligned_cols=62 Identities=27% Similarity=0.471 Sum_probs=57.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHhhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011621 290 TDSHSLAERVRREKISERMKFLQDLVPGC--NKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV 352 (481)
Q Consensus 290 t~sHs~aERrRReKINer~~~LrsLVP~~--~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~v 352 (481)
+..|+..||+||.+||+.|..|+++||.+ .|+ +|++||..||+||+.||.+++.|+.++..+
T Consensus 13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999987 464 999999999999999999999999987665
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.44 E-value=9.2e-14 Score=113.46 Aligned_cols=62 Identities=27% Similarity=0.477 Sum_probs=56.5
Q ss_pred CcchhHHHHHHHHHHHHHHHhhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011621 291 DSHSLAERVRREKISERMKFLQDLVPGC--NKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN 353 (481)
Q Consensus 291 ~sHs~aERrRReKINer~~~LrsLVP~~--~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~vn 353 (481)
..|+..||+||.+||+.|..|+++||.+ .|+ +|++||..||+||+.||.+++.|+.++..+.
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999985 565 9999999999999999999999988776654
No 8
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.44 E-value=1.1e-14 Score=118.17 Aligned_cols=51 Identities=31% Similarity=0.531 Sum_probs=46.8
Q ss_pred CCCcchhHHHHHHHHHHHHHHHhhhcCCCC----CCCCCchhhHHHHHHHHHHHHH
Q 011621 289 ATDSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQR 340 (481)
Q Consensus 289 at~sHs~aERrRReKINer~~~LrsLVP~~----~K~tdKAsILdeAIdYIK~LQ~ 340 (481)
++.+|+++||+||++||+.|.+|+.|||.| .|+ |||+||+.||+||+.||.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence 446899999999999999999999999987 565 999999999999999974
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.39 E-value=3.1e-13 Score=112.61 Aligned_cols=60 Identities=27% Similarity=0.391 Sum_probs=53.7
Q ss_pred CcchhHHHHHHHHHHHHHHHhhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011621 291 DSHSLAERVRREKISERMKFLQDLVPGC---NKVTGKAVMLDEIINYVQSLQRQVEFLSMKLAT 351 (481)
Q Consensus 291 ~sHs~aERrRReKINer~~~LrsLVP~~---~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~ 351 (481)
..|+..||+||++||++|..|+++||.+ .|. +|++||..||+||++|+.+.+.|...+..
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~~ 70 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999976 465 99999999999999999998887765544
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.33 E-value=4.8e-13 Score=109.28 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=49.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHhhhcCCC---CCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 011621 290 TDSHSLAERVRREKISERMKFLQDLVPG---CNKVTGKAVMLDEIINYVQSLQRQVEFLS 346 (481)
Q Consensus 290 t~sHs~aERrRReKINer~~~LrsLVP~---~~K~tdKAsILdeAIdYIK~LQ~QVe~Le 346 (481)
+..|++.||+||.+||+.|..|+++||. ..|...|+.||..||+||++||++|++++
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3579999999999999999999999995 34544688999999999999999999876
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.24 E-value=1.3e-11 Score=101.35 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=54.3
Q ss_pred CcchhHHHHHHHHHHHHHHHhhhcCCCC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011621 291 DSHSLAERVRREKISERMKFLQDLVPGC---NKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATV 352 (481)
Q Consensus 291 ~sHs~aERrRReKINer~~~LrsLVP~~---~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~v 352 (481)
..|+..||+||..||+.|..|+++||.+ .|. .|+.||..||+||+.||.+.+.|..+...+
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999965 454 899999999999999999999888776554
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.90 E-value=1e-09 Score=107.81 Aligned_cols=53 Identities=23% Similarity=0.439 Sum_probs=41.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHhhhcCCC-CCCCCCchhhHHHHHHHHHHHHHH
Q 011621 288 QATDSHSLAERVRREKISERMKFLQDLVPG-CNKVTGKAVMLDEIINYVQSLQRQ 341 (481)
Q Consensus 288 ~at~sHs~aERrRReKINer~~~LrsLVP~-~~K~tdKAsILdeAIdYIK~LQ~Q 341 (481)
.++.+|+.+||+||+|||+.|..|++|||. ..|+ ||++||..||+|||.|+..
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhh
Confidence 344689999999999999999999999994 4565 9999999999999999864
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.87 E-value=1.5e-09 Score=87.06 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=46.8
Q ss_pred CcchhHHHHHHHHHHHHHHHhhhcCCCC-CCCCCchhhHHHHHHHHHHHHHHHH
Q 011621 291 DSHSLAERVRREKISERMKFLQDLVPGC-NKVTGKAVMLDEIINYVQSLQRQVE 343 (481)
Q Consensus 291 ~sHs~aERrRReKINer~~~LrsLVP~~-~K~tdKAsILdeAIdYIK~LQ~QVe 343 (481)
..|+..||+|+..||+.|..||++||.. ++..+|+.||..||+||+.||+.++
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4699999999999999999999999964 2334899999999999999998653
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.85 E-value=2.8e-09 Score=83.48 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=46.6
Q ss_pred cchhHHHHHHHHHHHHHHHhhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 011621 292 SHSLAERVRREKISERMKFLQDLVPGC--NKVTGKAVMLDEIINYVQSLQRQVE 343 (481)
Q Consensus 292 sHs~aERrRReKINer~~~LrsLVP~~--~K~tdKAsILdeAIdYIK~LQ~QVe 343 (481)
.|+..||+|+..||+.|..||++||.. +++..|..+|..||+||+.||+.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999965 3345999999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.76 E-value=2.6e-09 Score=106.51 Aligned_cols=52 Identities=29% Similarity=0.432 Sum_probs=46.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHhhhcCC----CCCCCCCchhhHHHHHHHHHHHHHH
Q 011621 289 ATDSHSLAERVRREKISERMKFLQDLVP----GCNKVTGKAVMLDEIINYVQSLQRQ 341 (481)
Q Consensus 289 at~sHs~aERrRReKINer~~~LrsLVP----~~~K~tdKAsILdeAIdYIK~LQ~Q 341 (481)
++.+|+.+||+||+|||+.|..|+.||| ...|+ ||++||..||+|||.|+..
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence 4568999999999999999999999999 45676 9999999999999999843
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.37 E-value=1.1e-07 Score=76.78 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCC--CCCCCchhhHHHHHHHHHHHHH
Q 011621 294 SLAERVRREKISERMKFLQDLVPGC--NKVTGKAVMLDEIINYVQSLQR 340 (481)
Q Consensus 294 s~aERrRReKINer~~~LrsLVP~~--~K~tdKAsILdeAIdYIK~LQ~ 340 (481)
+-.||+|+..||+.|..||++||.. +++..|..+|..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4568889999999999999999965 3335899999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.36 E-value=5.6e-07 Score=75.16 Aligned_cols=47 Identities=30% Similarity=0.457 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhcCCCCCC---CCCchhhHHHHHHHHHHHHHHHHHHHH
Q 011621 301 REKISERMKFLQDLVPGCNK---VTGKAVMLDEIINYVQSLQRQVEFLSM 347 (481)
Q Consensus 301 ReKINer~~~LrsLVP~~~K---~tdKAsILdeAIdYIK~LQ~QVe~Le~ 347 (481)
|..||++|++|..|||.+.. ..+|++||..+|+||+.||.+++.+.+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999997632 248999999999999999987665543
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.76 E-value=4e-05 Score=65.68 Aligned_cols=49 Identities=24% Similarity=0.356 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCC--CCCCCchhhHHHHHHHHHHHHHHHHH
Q 011621 296 AERVRREKISERMKFLQDLVPGC--NKVTGKAVMLDEIINYVQSLQRQVEF 344 (481)
Q Consensus 296 aERrRReKINer~~~LrsLVP~~--~K~tdKAsILdeAIdYIK~LQ~QVe~ 344 (481)
.||.|=..||+.|..||.+||.. +|+..|..+|..||+||+.||+.++.
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 35778888999999999999965 44458999999999999999987754
No 19
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=47.60 E-value=13 Score=28.97 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcccc
Q 011621 333 NYVQSLQRQVEFLSMKLATVNPRMDLN 359 (481)
Q Consensus 333 dYIK~LQ~QVe~Le~kl~~vnp~l~~n 359 (481)
.||..|+.+|+.||..+..+.+..+++
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~~~~l~ 71 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFPREDLD 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchhhH
Confidence 599999999999999999988865543
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=46.35 E-value=42 Score=25.83 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011621 297 ERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVN 353 (481)
Q Consensus 297 ERrRReKINer~~~LrsLVP~~~K~tdKAsILdeAIdYIK~LQ~QVe~Le~kl~~vn 353 (481)
||++|.+...++.+.+. - ..-.+|+..|+.+|+.|+.+...+.
T Consensus 1 Ekr~rrrerNR~AA~rc-----R---------~rKk~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-----R---------NRRRELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777765 1 2334666667776666666555444
No 21
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=43.17 E-value=17 Score=27.55 Aligned_cols=21 Identities=10% Similarity=0.254 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 011621 333 NYVQSLQRQVEFLSMKLATVN 353 (481)
Q Consensus 333 dYIK~LQ~QVe~Le~kl~~vn 353 (481)
.||..|+.+|+.|+..|..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999887764
No 22
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=37.61 E-value=21 Score=26.64 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 011621 333 NYVQSLQRQVEFLSMKLATVN 353 (481)
Q Consensus 333 dYIK~LQ~QVe~Le~kl~~vn 353 (481)
.||..|+.+|+.|+..|..+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777766553
No 23
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=36.31 E-value=37 Score=25.87 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011621 326 VMLDEIINYVQSLQRQVEFLSMKLATVNPR 355 (481)
Q Consensus 326 sILdeAIdYIK~LQ~QVe~Le~kl~~vnp~ 355 (481)
..|++.++-+..|.++++.|+.++..++.+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 469999999999999999999999887654
No 24
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=33.89 E-value=35 Score=27.03 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 011621 332 INYVQSLQRQVEFLSMKLATVNP 354 (481)
Q Consensus 332 IdYIK~LQ~QVe~Le~kl~~vnp 354 (481)
-.||+.|+.+|+.|+..|..+..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 35999999999999998887654
No 25
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=32.20 E-value=21 Score=27.48 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC
Q 011621 332 INYVQSLQRQVEFLSMKLATVN 353 (481)
Q Consensus 332 IdYIK~LQ~QVe~Le~kl~~vn 353 (481)
-.||..|+.+|+.||..|..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999998876653
No 26
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.25 E-value=20 Score=26.61 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCc
Q 011621 334 YVQSLQRQVEFLSMKLATVNPRM 356 (481)
Q Consensus 334 YIK~LQ~QVe~Le~kl~~vnp~l 356 (481)
|+-.|+.+++.|+.+.+.++.++
T Consensus 4 Yl~eLE~r~k~le~~naeLEerv 26 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERL 26 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888887777776655
No 27
>3sri_B Rhoptry NECK protein 2; AMA1, RON2, malaria, cell invasion; 1.60A {Plasmodium falciparum}
Probab=23.22 E-value=22 Score=24.42 Aligned_cols=12 Identities=25% Similarity=0.830 Sum_probs=9.8
Q ss_pred CccccccCCCCC
Q 011621 115 NTCCYSTPLNSP 126 (481)
Q Consensus 115 ~~sCy~Tplss~ 126 (481)
-||||+|.++.|
T Consensus 8 ~tSCyTs~~~PP 19 (29)
T 3sri_B 8 VASCFTTRMSPP 19 (29)
T ss_dssp CCSEEEESSSSC
T ss_pred chheeecccCch
Confidence 589999988665
No 28
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.65 E-value=72 Score=26.47 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011621 328 LDEIINYVQSLQRQVEFLSMKLATVNP 354 (481)
Q Consensus 328 LdeAIdYIK~LQ~QVe~Le~kl~~vnp 354 (481)
++.||+-|.-||.+|++|.++...+..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999988766543
No 29
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.64 E-value=61 Score=24.54 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 011621 333 NYVQSLQRQVEFLSMKLATVN 353 (481)
Q Consensus 333 dYIK~LQ~QVe~Le~kl~~vn 353 (481)
.||..|+.+|..|+.+...+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888887655543
No 30
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=20.39 E-value=1.6e+02 Score=21.70 Aligned_cols=40 Identities=13% Similarity=0.280 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 011621 301 REKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQ 341 (481)
Q Consensus 301 ReKINer~~~LrsLVP~~~K~tdKAsILdeAIdYIK~LQ~Q 341 (481)
++.|.+.+..-...+|...... ...=+...|.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~l-s~~ei~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRL-SPLQIEDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCC-CHHHHHHHHHHHHHHhhc
Confidence 5566666666567888775422 334468899999998754
Done!