Query 011622
Match_columns 481
No_of_seqs 360 out of 1964
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:24:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0311 Predicted E3 ubiquitin 100.0 1.4E-35 3.1E-40 296.3 10.3 335 96-480 33-379 (381)
2 PF15227 zf-C3HC4_4: zinc fing 99.1 3.3E-11 7.1E-16 87.7 3.1 39 109-148 1-42 (42)
3 smart00504 Ubox Modified RING 99.1 7.1E-11 1.5E-15 92.1 4.2 61 106-169 1-61 (63)
4 TIGR00599 rad18 DNA repair pro 99.0 1.4E-10 3.1E-15 121.4 4.6 70 99-171 19-88 (397)
5 PF14835 zf-RING_6: zf-RING of 99.0 1.1E-10 2.5E-15 91.4 1.8 62 103-168 4-65 (65)
6 PLN03208 E3 ubiquitin-protein 99.0 2.7E-10 5.9E-15 108.1 4.3 50 104-154 16-80 (193)
7 PF04564 U-box: U-box domain; 99.0 2.9E-10 6.2E-15 92.3 3.7 66 105-172 3-68 (73)
8 PF13923 zf-C3HC4_2: Zinc fing 98.9 3.9E-10 8.4E-15 80.5 2.5 39 109-148 1-39 (39)
9 KOG0287 Postreplication repair 98.9 3.2E-10 7E-15 114.1 1.2 69 101-172 18-86 (442)
10 KOG0317 Predicted E3 ubiquitin 98.9 1.2E-09 2.5E-14 108.5 3.7 49 104-154 237-285 (293)
11 PF13639 zf-RING_2: Ring finge 98.8 1.2E-09 2.7E-14 79.7 1.5 41 108-149 2-44 (44)
12 KOG0823 Predicted E3 ubiquitin 98.8 1.7E-09 3.6E-14 104.6 2.2 49 105-154 46-96 (230)
13 PF00097 zf-C3HC4: Zinc finger 98.8 3.1E-09 6.7E-14 76.2 2.8 40 109-148 1-41 (41)
14 KOG0320 Predicted E3 ubiquitin 98.8 4.2E-09 9.1E-14 98.0 3.7 51 104-156 129-181 (187)
15 COG5432 RAD18 RING-finger-cont 98.8 4.2E-09 9E-14 104.3 3.4 69 102-173 21-89 (391)
16 PF13920 zf-C3HC4_3: Zinc fing 98.8 4.8E-09 1.1E-13 78.7 2.8 46 106-153 2-48 (50)
17 PHA02929 N1R/p28-like protein; 98.7 5.5E-09 1.2E-13 102.8 3.6 49 105-154 173-228 (238)
18 cd00162 RING RING-finger (Real 98.7 6.4E-09 1.4E-13 74.3 3.0 44 108-151 1-44 (45)
19 KOG2177 Predicted E3 ubiquitin 98.7 2.9E-09 6.2E-14 103.6 1.5 84 102-190 9-104 (386)
20 KOG2660 Locus-specific chromos 98.7 4.4E-09 9.5E-14 106.2 2.5 79 97-176 6-87 (331)
21 PHA02926 zinc finger-like prot 98.5 4.4E-08 9.5E-13 94.4 3.0 52 103-154 167-231 (242)
22 smart00184 RING Ring finger. E 98.5 8.8E-08 1.9E-12 65.9 2.7 39 109-148 1-39 (39)
23 KOG2164 Predicted E3 ubiquitin 98.4 7.5E-08 1.6E-12 102.2 2.2 48 106-154 186-237 (513)
24 TIGR00570 cdk7 CDK-activating 98.4 8.5E-07 1.8E-11 90.1 9.6 49 106-154 3-55 (309)
25 PF13445 zf-RING_UBOX: RING-ty 98.4 1.1E-07 2.4E-12 69.6 1.7 36 109-146 1-43 (43)
26 COG5574 PEX10 RING-finger-cont 98.4 9.7E-08 2.1E-12 94.0 1.9 50 104-154 213-263 (271)
27 PF14634 zf-RING_5: zinc-RING 98.4 1.9E-07 4.2E-12 68.4 2.8 42 108-150 1-44 (44)
28 PF12678 zf-rbx1: RING-H2 zinc 98.4 2.5E-07 5.4E-12 75.2 3.0 41 108-149 21-73 (73)
29 KOG0978 E3 ubiquitin ligase in 98.2 2.8E-07 6.1E-12 101.9 0.5 61 97-159 634-694 (698)
30 KOG4628 Predicted E3 ubiquitin 98.2 8.7E-07 1.9E-11 91.3 2.8 48 107-154 230-279 (348)
31 COG5540 RING-finger-containing 98.1 9.9E-07 2.1E-11 88.2 2.3 49 106-154 323-373 (374)
32 KOG0824 Predicted E3 ubiquitin 97.9 4.6E-06 9.9E-11 83.6 2.1 48 106-154 7-54 (324)
33 PF11789 zf-Nse: Zinc-finger o 97.8 1.1E-05 2.4E-10 62.6 2.3 44 104-147 9-53 (57)
34 COG5243 HRD1 HRD ubiquitin lig 97.8 1E-05 2.2E-10 83.0 2.4 47 105-153 286-345 (491)
35 KOG0297 TNF receptor-associate 97.8 1.4E-05 3E-10 84.6 3.3 69 103-172 18-86 (391)
36 KOG4159 Predicted E3 ubiquitin 97.8 1E-05 2.3E-10 85.2 2.3 50 103-154 81-130 (398)
37 KOG0802 E3 ubiquitin ligase [P 97.8 8.3E-06 1.8E-10 89.7 1.3 47 106-154 291-342 (543)
38 PF12861 zf-Apc11: Anaphase-pr 97.7 2E-05 4.3E-10 65.7 2.9 48 106-153 21-82 (85)
39 KOG2879 Predicted E3 ubiquitin 97.7 1.7E-05 3.6E-10 78.7 2.8 51 104-154 237-288 (298)
40 COG5152 Uncharacterized conser 97.7 2E-05 4.4E-10 74.7 2.1 59 106-168 196-254 (259)
41 COG5222 Uncharacterized conser 97.6 4.7E-05 1E-09 76.3 3.2 44 107-150 275-318 (427)
42 KOG0804 Cytoplasmic Zn-finger 97.4 6E-05 1.3E-09 79.2 1.7 49 102-153 171-222 (493)
43 KOG4172 Predicted E3 ubiquitin 97.3 6.1E-05 1.3E-09 57.5 0.0 46 107-153 8-54 (62)
44 KOG1813 Predicted E3 ubiquitin 97.3 0.00013 2.8E-09 73.2 2.1 47 106-154 241-287 (313)
45 KOG4367 Predicted Zn-finger pr 97.2 0.00018 3.9E-09 75.3 2.8 34 104-138 2-35 (699)
46 COG5219 Uncharacterized conser 97.1 0.00013 2.7E-09 82.3 0.8 50 104-153 1467-1523(1525)
47 KOG4739 Uncharacterized protei 97.0 0.003 6.5E-08 62.1 8.4 44 108-154 5-49 (233)
48 KOG1039 Predicted E3 ubiquitin 96.9 0.00045 9.7E-09 71.7 1.7 50 104-153 159-221 (344)
49 KOG0825 PHD Zn-finger protein 96.9 0.00024 5.1E-09 78.9 -0.4 50 104-154 121-172 (1134)
50 KOG1645 RING-finger-containing 96.8 0.0014 3.1E-08 68.4 5.0 49 106-154 4-57 (463)
51 KOG0828 Predicted E3 ubiquitin 96.8 0.00052 1.1E-08 73.0 1.3 51 104-154 569-635 (636)
52 KOG1734 Predicted RING-contain 96.6 0.00058 1.3E-08 67.8 0.6 50 105-155 223-283 (328)
53 KOG1002 Nucleotide excision re 96.6 0.00077 1.7E-08 72.2 1.1 50 104-154 534-587 (791)
54 KOG4692 Predicted E3 ubiquitin 96.5 0.0013 2.8E-08 67.5 1.9 47 105-153 421-467 (489)
55 KOG0827 Predicted E3 ubiquitin 96.5 0.0029 6.3E-08 65.8 4.3 48 107-154 5-57 (465)
56 PF11793 FANCL_C: FANCL C-term 96.4 0.00086 1.9E-08 54.1 0.2 49 106-154 2-67 (70)
57 KOG1785 Tyrosine kinase negati 96.2 0.0019 4.1E-08 67.3 1.3 48 108-156 371-419 (563)
58 KOG4265 Predicted E3 ubiquitin 96.1 0.0028 6.1E-08 65.4 2.2 47 106-154 290-337 (349)
59 COG5194 APC11 Component of SCF 96.0 0.0044 9.6E-08 51.0 2.3 34 120-154 49-82 (88)
60 PF04641 Rtf2: Rtf2 RING-finge 96.0 0.0047 1E-07 62.0 3.0 57 104-162 111-170 (260)
61 KOG3800 Predicted E3 ubiquitin 95.9 0.0061 1.3E-07 61.4 3.1 47 108-154 2-52 (300)
62 smart00744 RINGv The RING-vari 95.9 0.0064 1.4E-07 45.7 2.5 41 108-149 1-49 (49)
63 KOG3039 Uncharacterized conser 95.4 0.01 2.2E-07 58.5 2.8 50 104-154 219-271 (303)
64 PF14570 zf-RING_4: RING/Ubox 95.2 0.017 3.7E-07 43.3 2.6 44 109-152 1-47 (48)
65 COG5220 TFB3 Cdk activating ki 95.1 0.018 3.9E-07 56.6 3.2 49 106-154 10-65 (314)
66 KOG1571 Predicted E3 ubiquitin 95.0 0.011 2.5E-07 61.1 1.9 45 105-154 304-348 (355)
67 KOG4275 Predicted E3 ubiquitin 94.9 0.0061 1.3E-07 61.4 -0.4 42 106-153 300-342 (350)
68 KOG4185 Predicted E3 ubiquitin 94.8 0.02 4.4E-07 58.0 2.9 63 107-170 4-76 (296)
69 KOG1001 Helicase-like transcri 94.5 0.015 3.1E-07 65.8 1.3 46 107-154 455-501 (674)
70 KOG2930 SCF ubiquitin ligase, 94.5 0.017 3.7E-07 49.8 1.3 45 106-151 46-106 (114)
71 KOG1941 Acetylcholine receptor 94.5 0.014 2.9E-07 61.0 0.8 49 105-153 364-416 (518)
72 PF05290 Baculo_IE-1: Baculovi 94.5 0.026 5.7E-07 50.9 2.5 57 96-154 72-133 (140)
73 KOG3002 Zn finger protein [Gen 94.3 0.025 5.4E-07 58.0 2.3 65 103-175 45-109 (299)
74 KOG1493 Anaphase-promoting com 94.3 0.012 2.6E-07 48.1 -0.0 46 108-153 22-81 (84)
75 PF14447 Prok-RING_4: Prokaryo 94.2 0.029 6.4E-07 43.1 2.0 46 105-154 6-51 (55)
76 KOG0826 Predicted E3 ubiquitin 94.1 0.027 5.8E-07 57.7 2.0 48 104-152 298-345 (357)
77 PF02891 zf-MIZ: MIZ/SP-RING z 93.9 0.032 7E-07 42.1 1.7 45 106-151 2-50 (50)
78 KOG4445 Uncharacterized conser 93.8 0.015 3.3E-07 58.8 -0.4 50 105-154 114-187 (368)
79 PF11816 DUF3337: Domain of un 92.5 0.13 2.8E-06 53.4 4.1 109 361-479 198-330 (331)
80 KOG4362 Transcriptional regula 92.3 0.042 9.2E-07 61.5 0.3 67 101-169 16-84 (684)
81 COG5236 Uncharacterized conser 92.0 0.092 2E-06 54.2 2.1 47 104-151 59-106 (493)
82 KOG2114 Vacuolar assembly/sort 91.7 0.087 1.9E-06 59.9 1.7 41 106-150 840-880 (933)
83 COG5175 MOT2 Transcriptional r 91.6 0.088 1.9E-06 54.2 1.6 47 108-154 16-65 (480)
84 KOG2932 E3 ubiquitin ligase in 91.5 0.085 1.8E-06 53.8 1.3 46 106-154 90-135 (389)
85 KOG1814 Predicted E3 ubiquitin 91.3 0.14 3.1E-06 53.9 2.8 47 104-150 182-237 (445)
86 PF10367 Vps39_2: Vacuolar sor 91.0 0.095 2.1E-06 44.5 1.0 32 104-135 76-108 (109)
87 KOG3161 Predicted E3 ubiquitin 90.5 0.13 2.9E-06 56.8 1.7 40 103-146 8-51 (861)
88 PHA03096 p28-like protein; Pro 90.2 0.11 2.3E-06 53.1 0.7 44 107-150 179-231 (284)
89 KOG0298 DEAD box-containing he 90.1 0.062 1.4E-06 63.4 -1.2 50 103-153 1150-1199(1394)
90 PF08746 zf-RING-like: RING-li 89.5 0.33 7.1E-06 35.5 2.6 40 109-148 1-43 (43)
91 cd01611 GABARAP Ubiquitin doma 89.2 0.59 1.3E-05 41.2 4.5 84 377-479 25-109 (112)
92 KOG2817 Predicted E3 ubiquitin 88.5 0.29 6.2E-06 51.6 2.3 48 103-151 331-383 (394)
93 KOG1100 Predicted E3 ubiquitin 88.0 1.2 2.6E-05 43.4 6.3 40 109-154 161-201 (207)
94 cd01612 APG12_C Ubiquitin-like 87.6 1.2 2.5E-05 37.6 5.1 79 379-478 4-83 (87)
95 KOG3970 Predicted E3 ubiquitin 87.2 0.61 1.3E-05 45.7 3.6 47 106-153 50-105 (299)
96 PF02991 Atg8: Autophagy prote 86.0 0.91 2E-05 39.6 3.7 83 377-477 17-99 (104)
97 KOG3579 Predicted E3 ubiquitin 85.8 0.3 6.5E-06 49.3 0.7 34 105-139 267-304 (352)
98 PF07800 DUF1644: Protein of u 84.5 0.79 1.7E-05 42.7 2.8 32 106-138 2-46 (162)
99 KOG3039 Uncharacterized conser 83.6 0.67 1.4E-05 46.1 2.0 37 102-139 39-75 (303)
100 PF05883 Baculo_RING: Baculovi 82.4 0.46 1E-05 43.1 0.3 34 106-139 26-67 (134)
101 PHA02825 LAP/PHD finger-like p 81.5 1.4 3.1E-05 41.1 3.1 47 106-154 8-60 (162)
102 PF04110 APG12: Ubiquitin-like 80.3 1.3 2.9E-05 37.3 2.4 81 377-478 2-83 (87)
103 PF03854 zf-P11: P-11 zinc fin 80.2 1.2 2.6E-05 33.4 1.8 31 123-154 16-47 (50)
104 KOG3268 Predicted E3 ubiquitin 80.2 0.9 1.9E-05 43.1 1.4 51 104-154 163-229 (234)
105 PHA02862 5L protein; Provision 80.1 1.2 2.5E-05 41.1 2.1 47 107-155 3-55 (156)
106 PF07975 C1_4: TFIIH C1-like d 79.5 1.8 3.8E-05 33.0 2.5 40 109-149 2-50 (51)
107 KOG1952 Transcription factor N 78.5 1.1 2.4E-05 51.3 1.8 50 104-153 189-247 (950)
108 PF14569 zf-UDP: Zinc-binding 78.4 1.7 3.7E-05 35.9 2.3 49 106-154 9-63 (80)
109 KOG1428 Inhibitor of type V ad 78.4 1.8 3.9E-05 52.2 3.4 50 105-154 3485-3545(3738)
110 KOG1940 Zn-finger protein [Gen 78.3 1.1 2.5E-05 45.4 1.6 44 106-150 158-204 (276)
111 KOG2034 Vacuolar sorting prote 76.9 1.1 2.4E-05 51.6 1.1 38 102-139 813-851 (911)
112 PF12906 RINGv: RING-variant d 76.6 1.5 3.3E-05 32.5 1.5 39 109-148 1-47 (47)
113 PF10272 Tmpp129: Putative tra 75.3 1.6 3.5E-05 45.9 1.8 30 125-154 311-352 (358)
114 PF02318 FYVE_2: FYVE-type zin 74.2 3.8 8.2E-05 36.2 3.6 45 106-150 54-102 (118)
115 KOG1812 Predicted E3 ubiquitin 73.9 1.7 3.6E-05 46.3 1.5 41 106-148 306-351 (384)
116 KOG3113 Uncharacterized conser 73.1 2.8 6.2E-05 41.9 2.8 56 104-162 109-167 (293)
117 KOG1812 Predicted E3 ubiquitin 72.8 1.7 3.7E-05 46.2 1.3 34 106-139 146-182 (384)
118 KOG0825 PHD Zn-finger protein 72.5 2.5 5.5E-05 48.1 2.6 48 106-153 96-154 (1134)
119 KOG2169 Zn-finger transcriptio 71.8 2.5 5.4E-05 47.9 2.4 65 103-169 303-371 (636)
120 KOG3899 Uncharacterized conser 68.2 2.5 5.4E-05 43.1 1.2 30 125-154 325-366 (381)
121 KOG0309 Conserved WD40 repeat- 68.1 3 6.6E-05 47.4 2.0 46 106-152 1028-1075(1081)
122 PLN02189 cellulose synthase 66.9 3.7 8.1E-05 48.5 2.4 49 106-154 34-88 (1040)
123 COG3813 Uncharacterized protei 66.5 3.5 7.6E-05 33.6 1.5 33 125-161 27-59 (84)
124 KOG1815 Predicted E3 ubiquitin 66.5 2.9 6.2E-05 45.2 1.4 36 104-139 68-103 (444)
125 PF07191 zinc-ribbons_6: zinc- 64.2 1.4 3.1E-05 35.7 -1.1 42 106-154 1-42 (70)
126 PLN02436 cellulose synthase A 64.0 4.5 9.9E-05 47.9 2.4 49 106-154 36-90 (1094)
127 PF06906 DUF1272: Protein of u 62.5 7.4 0.00016 30.2 2.5 44 108-154 7-53 (57)
128 PLN02638 cellulose synthase A 61.1 5.6 0.00012 47.2 2.5 49 106-154 17-71 (1079)
129 KOG4718 Non-SMC (structural ma 58.9 4.6 0.0001 39.5 1.1 47 106-153 181-227 (235)
130 COG5109 Uncharacterized conser 56.9 8.6 0.00019 39.7 2.7 48 102-150 332-384 (396)
131 PLN02400 cellulose synthase 56.8 6.5 0.00014 46.8 2.1 49 106-154 36-90 (1085)
132 PLN02195 cellulose synthase A 54.4 8.8 0.00019 45.2 2.6 47 107-153 7-59 (977)
133 TIGR00622 ssl1 transcription f 54.0 12 0.00026 33.1 2.8 42 107-149 56-110 (112)
134 KOG2068 MOT2 transcription fac 53.8 9.3 0.0002 39.7 2.4 48 106-154 249-299 (327)
135 KOG3799 Rab3 effector RIM1 and 53.7 21 0.00046 32.6 4.3 38 105-154 64-101 (169)
136 PLN02915 cellulose synthase A 50.8 10 0.00023 44.9 2.5 49 106-154 15-69 (1044)
137 PF10571 UPF0547: Uncharacteri 50.8 8.3 0.00018 25.2 1.0 22 108-129 2-24 (26)
138 PF04216 FdhE: Protein involve 50.5 4.6 0.0001 41.1 -0.4 45 106-151 172-220 (290)
139 KOG3439 Protein conjugation fa 50.4 23 0.0005 31.3 3.9 82 373-477 29-111 (116)
140 KOG3053 Uncharacterized conser 48.7 13 0.00027 37.5 2.3 50 105-154 19-83 (293)
141 COG0068 HypF Hydrogenase matur 48.5 8 0.00017 44.0 1.0 51 104-154 99-185 (750)
142 PF06844 DUF1244: Protein of u 47.8 8.7 0.00019 30.8 0.8 12 128-139 11-22 (68)
143 KOG0824 Predicted E3 ubiquitin 47.5 6.2 0.00013 40.5 0.0 50 104-154 103-152 (324)
144 KOG2660 Locus-specific chromos 47.5 13 0.00027 38.7 2.2 43 386-428 157-201 (331)
145 KOG2807 RNA polymerase II tran 46.9 11 0.00025 39.0 1.8 42 107-149 331-374 (378)
146 PF05605 zf-Di19: Drought indu 46.8 11 0.00023 28.5 1.2 38 106-151 2-40 (54)
147 cd00065 FYVE FYVE domain; Zinc 45.3 10 0.00022 28.5 0.9 33 107-139 3-38 (57)
148 smart00064 FYVE Protein presen 45.2 12 0.00027 29.2 1.4 34 106-139 10-46 (68)
149 KOG4185 Predicted E3 ubiquitin 44.7 3.9 8.5E-05 41.4 -1.9 45 106-151 207-265 (296)
150 KOG2979 Protein involved in DN 44.5 11 0.00023 38.0 1.1 43 105-147 175-218 (262)
151 COG5627 MMS21 DNA repair prote 43.6 13 0.00028 37.0 1.5 43 105-147 188-231 (275)
152 TIGR00143 hypF [NiFe] hydrogen 42.4 12 0.00025 43.2 1.2 50 105-154 67-152 (711)
153 PTZ00380 microtubule-associate 41.8 20 0.00042 32.2 2.2 63 396-477 44-106 (121)
154 KOG2231 Predicted E3 ubiquitin 41.2 11 0.00024 42.8 0.7 46 108-154 2-53 (669)
155 KOG1819 FYVE finger-containing 41.0 26 0.00056 38.4 3.4 31 106-136 901-934 (990)
156 PF01485 IBR: IBR domain; Int 40.7 8 0.00017 29.4 -0.3 32 107-138 19-59 (64)
157 PRK04023 DNA polymerase II lar 39.8 22 0.00048 42.1 2.8 45 106-154 626-675 (1121)
158 cd01806 Nedd8 Nebb8-like ubiq 39.6 38 0.00083 26.5 3.5 44 378-427 2-45 (76)
159 PF10497 zf-4CXXC_R1: Zinc-fin 39.3 29 0.00064 30.2 2.9 29 126-154 37-73 (105)
160 smart00647 IBR In Between Ring 38.7 12 0.00026 28.4 0.4 33 107-139 19-60 (64)
161 PF12773 DZR: Double zinc ribb 38.2 28 0.00061 25.5 2.3 27 128-154 13-41 (50)
162 PF14353 CpXC: CpXC protein 38.2 26 0.00057 31.0 2.5 47 107-154 2-50 (128)
163 cd01803 Ubiquitin Ubiquitin. U 38.0 37 0.00079 26.6 3.1 43 379-427 3-45 (76)
164 KOG3362 Predicted BBOX Zn-fing 37.7 11 0.00023 34.8 -0.0 27 107-135 119-146 (156)
165 TIGR01562 FdhE formate dehydro 37.1 12 0.00025 38.8 0.1 44 106-150 184-232 (305)
166 KOG1654 Microtubule-associated 36.6 58 0.0013 28.9 4.3 81 377-476 29-110 (116)
167 PF01363 FYVE: FYVE zinc finge 35.5 16 0.00034 28.7 0.6 34 106-139 9-45 (69)
168 COG5183 SSM4 Protein involved 34.3 29 0.00062 40.3 2.5 48 106-154 12-67 (1175)
169 KOG2113 Predicted RNA binding 33.4 27 0.00058 36.2 2.0 45 104-152 341-386 (394)
170 KOG1356 Putative transcription 33.4 13 0.00028 43.0 -0.3 50 105-154 228-283 (889)
171 KOG3842 Adaptor protein Pellin 32.2 31 0.00066 35.9 2.2 31 123-154 376-415 (429)
172 KOG2462 C2H2-type Zn-finger pr 32.0 15 0.00033 37.3 -0.0 52 104-156 159-229 (279)
173 smart00249 PHD PHD zinc finger 31.8 31 0.00067 23.9 1.6 41 108-148 1-47 (47)
174 PRK03564 formate dehydrogenase 31.4 22 0.00048 36.9 1.0 45 105-150 186-234 (309)
175 KOG1829 Uncharacterized conser 30.8 20 0.00042 40.3 0.6 27 120-150 532-558 (580)
176 PF11931 DUF3449: Domain of un 30.8 25 0.00055 34.1 1.3 36 98-134 93-134 (196)
177 PF13719 zinc_ribbon_5: zinc-r 30.3 30 0.00065 24.3 1.2 13 107-119 3-15 (37)
178 cd01805 RAD23_N Ubiquitin-like 29.6 72 0.0016 25.1 3.6 31 397-427 15-47 (77)
179 PF14446 Prok-RING_1: Prokaryo 29.5 40 0.00088 26.1 1.9 42 106-152 5-51 (54)
180 PF00240 ubiquitin: Ubiquitin 28.5 57 0.0012 25.1 2.8 31 397-427 10-40 (69)
181 KOG0269 WD40 repeat-containing 28.1 49 0.0011 38.1 3.0 48 106-154 779-829 (839)
182 KOG1815 Predicted E3 ubiquitin 27.8 34 0.00073 37.1 1.7 36 118-154 178-238 (444)
183 PF13240 zinc_ribbon_2: zinc-r 27.8 19 0.00041 22.8 -0.1 10 142-151 13-22 (23)
184 PF10235 Cript: Microtubule-as 27.7 43 0.00094 28.5 2.0 38 106-154 44-81 (90)
185 PF05502 Dynactin_p62: Dynacti 27.5 29 0.00063 38.2 1.2 52 103-154 2-64 (483)
186 PF13717 zinc_ribbon_4: zinc-r 26.6 38 0.00081 23.7 1.2 12 107-118 3-14 (36)
187 COG3364 Zn-ribbon containing p 26.5 31 0.00067 30.1 0.9 27 119-150 2-28 (112)
188 COG3492 Uncharacterized protei 26.2 28 0.0006 29.8 0.6 12 128-139 42-53 (104)
189 cd01794 DC_UbP_C dendritic cel 25.5 60 0.0013 25.8 2.4 31 397-427 13-43 (70)
190 PF04710 Pellino: Pellino; In 25.1 24 0.00052 37.7 0.0 45 106-153 277-339 (416)
191 KOG0717 Molecular chaperone (D 25.1 84 0.0018 34.4 4.0 13 107-119 293-305 (508)
192 KOG1609 Protein involved in mR 23.9 30 0.00065 34.8 0.5 48 106-154 78-135 (323)
193 PRK14559 putative protein seri 23.6 50 0.0011 37.7 2.2 45 108-153 3-52 (645)
194 PF13881 Rad60-SLD_2: Ubiquiti 23.3 44 0.00096 29.4 1.3 75 375-469 3-78 (111)
195 PF13901 DUF4206: Domain of un 23.1 65 0.0014 31.1 2.6 41 104-150 150-197 (202)
196 KOG1029 Endocytic adaptor prot 23.0 89 0.0019 36.3 3.8 10 312-321 720-729 (1118)
197 KOG0314 Predicted E3 ubiquitin 22.6 48 0.001 36.1 1.7 50 99-150 212-263 (448)
198 PTZ00303 phosphatidylinositol 22.2 41 0.00088 39.0 1.1 32 107-138 461-500 (1374)
199 PF09845 DUF2072: Zn-ribbon co 22.1 42 0.00091 30.5 1.0 27 119-150 1-27 (131)
200 smart00154 ZnF_AN1 AN1-like Zi 21.6 56 0.0012 23.3 1.3 24 109-132 1-25 (39)
201 cd01798 parkin_N amino-termina 20.9 80 0.0017 24.6 2.3 30 397-426 13-42 (70)
202 KOG0289 mRNA splicing factor [ 20.8 5.4E+02 0.012 28.2 8.9 47 107-154 1-47 (506)
203 KOG2186 Cell growth-regulating 20.3 44 0.00096 33.7 0.8 31 107-137 4-54 (276)
204 cd01809 Scythe_N Ubiquitin-lik 20.3 1.3E+02 0.0027 23.1 3.3 41 381-427 5-45 (72)
205 KOG0827 Predicted E3 ubiquitin 20.2 12 0.00026 39.7 -3.2 47 107-154 197-246 (465)
206 PF04710 Pellino: Pellino; In 20.2 34 0.00075 36.5 0.0 32 123-154 363-402 (416)
No 1
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-35 Score=296.34 Aligned_cols=335 Identities=41% Similarity=0.608 Sum_probs=267.5
Q ss_pred cccccccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhcchh
Q 011622 96 VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI 175 (481)
Q Consensus 96 ~~~~~~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~~ 175 (481)
+.+.+..+...+.||||++++...+++..|+|.||..||...+..+.+.||.||+.+.+++.+++++.+.++|.++++.+
T Consensus 33 i~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~si 112 (381)
T KOG0311|consen 33 IMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYPSI 112 (381)
T ss_pred heecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhccH
Confidence 77788889999999999999999999888999999999999999888999999999999999999999999999999999
Q ss_pred hhhhHHHHhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcchhhhcccccccCCCCCCCccccCCCCCCCCCCCCCC--
Q 011622 176 DKYEEEELAFHEEERTRNK-QIQASIAKIFQRQSEALVKRRTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQGS-- 252 (481)
Q Consensus 176 ~~~ee~l~~fceeek~~~k-el~~~l~~~lk~~~e~l~k~~~~~k~~~~~~k~r~~r~~r~~~~R~Rr~~r~~~~~~~-- 252 (481)
..++.....|.+.+..... .|+..+++.++.+...+.++++.-+- ++.+ ...+++++++.+.+.....
T Consensus 113 e~~e~~q~~~~ekd~~~~~q~i~~si~~~~~~qs~~~~kr~a~~~~-------~s~r--~g~Gs~~~gn~r~~~~s~~~a 183 (381)
T KOG0311|consen 113 EEYEAPQPRFMEKDDSAQIQYIKTSINAAVDHQSSYLTKRKALEEL-------RSIR--WGGGSRRRGNVRNVEQSKKSA 183 (381)
T ss_pred HHHhccchhHHhhHHHHhHHHHhhhHHHHHhhhhhhhhhhhccccc-------cccc--ccCCCCCCCCcccchhccccC
Confidence 9999988888887766444 59999999999999988887765332 2222 2335677777777543222
Q ss_pred --CCCCCCCCCCCCCCCCCCcccccccchhhhhccCCCCCCC-CCCCCCC-CCCCCCcccccccccccCCCCCcccCcch
Q 011622 253 --EDNEDENDDNGGKDSSSNDERSAEVRPRRRKRRSGIRSSQ-PSSSAAN-SDGGCIENDLEVGRESRGISPGLVWNPEM 328 (481)
Q Consensus 253 --~~~~~~~~~~~~~~~s~~d~~~~~~~~~r~rr~~~~r~~q-~~ss~~~-~~~~~~~~d~~~~re~~~~~~~~~~~~~~ 328 (481)
+++...+.++.++++++ |+. ....+.-++..+..+ ++++.++ .+++++.+|.+..+++.++++++||+.+.
T Consensus 184 ~~ea~~~~~~n~rg~~ss~-d~~----~~~~~~~~S~d~~~~~~~~s~as~~~~~~~~a~te~~~~~~~i~r~~v~~~e~ 258 (381)
T KOG0311|consen 184 PKEADGNDDENDRGKDSSS-DEL----MDFPREIRSSDREQTHPSSSGASMNDSNCAGADTEDVRDSSTISRTLVWNRES 258 (381)
T ss_pred CccCCCccccccccccccc-ccc----ccccccccccccccCCCCccccccCCCcccCCCCccccccccccccccccccc
Confidence 33333444445544444 443 223333334444344 5666666 67888888888889999999999999999
Q ss_pred hhccCCCcccCccCCCC-CCCCCCCccchhHHHHHHHHHhhhcccccceeEEEEeecCCCCCCCCCCCcccccCcchHHH
Q 011622 329 LAWGRGGTRSNTRHGSA-SGCNSKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQ 407 (481)
Q Consensus 329 ~~~g~~g~rs~~r~g~~-~~~~~~~~~~~~~~k~~~~l~~~~~~~~e~~~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~ 407 (481)
.+||++|+++.||+|++ .|+-.+.+|+++..++++|+.......+
T Consensus 259 ~~s~r~~~~~~t~n~~~~~~~k~~~vr~a~~~~~~e~~~~~~G~S~---------------------------------- 304 (381)
T KOG0311|consen 259 SESGRGGTRSNTRNGNNKMGRKSLAVRNALEVRLSEYDGSVEGTSN---------------------------------- 304 (381)
T ss_pred chhccCCccccccccccccccchhhhhHHHHHHhhhhccccccccc----------------------------------
Confidence 99999999999999996 6676777899999999999996666655
Q ss_pred HHHHhHhccCCcccceEEEEEecccc--cCCCCCC--CCCChhhhhhcccccccccccccccCCCCcchhhhhhhhc
Q 011622 408 LCEYVSLQTPLQAEEVEILMVKERLD--AKGNQST--PIPTTDQLQILEGQETLAGLRVNHTSNTDHLILAYRQKQS 480 (481)
Q Consensus 408 l~~~va~q~~~~~~e~e~~~~~~~~~--~~~~~~~--~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~l~~~y~~k~~ 480 (481)
+|||.+.++..+++|+++.....- .+.+.-+ ..+.++++.+|++.+||+.++.+||..++.++|-|..|.+
T Consensus 305 --~~~~~~~~~~~~~~~~~~~~~~~~d~~~enn~~iy~a~~~~~~~~Lng~~Tls~v~~df~kvn~~m~l~~~~kk~ 379 (381)
T KOG0311|consen 305 --IKVAKKKPLKREEVELLVELIHPLDTASENNYTIYIATSKDQFTSLNGDETLSLVKEDFWKVNEPMELSYHEKKI 379 (381)
T ss_pred --ccccccCCcccccccccccccccccccccccceeEeecCCCceEEecccchHHHHhhhhhhcccchhhhhchhcc
Confidence 899999999999999999887321 2222111 1389999999999999999999999999999999998865
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.13 E-value=3.3e-11 Score=87.69 Aligned_cols=39 Identities=38% Similarity=1.092 Sum_probs=31.0
Q ss_pred ccccccccccceecccCCCcccHHHHhhhhhcCC---CCCCCc
Q 011622 109 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGN---NECPAC 148 (481)
Q Consensus 109 CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~---~~CP~C 148 (481)
||||+++|.+||+ ++|||+||..||..|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~-l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVS-LPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccc-cCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999998 99999999999999998432 479987
No 3
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.10 E-value=7.1e-11 Score=92.10 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=53.8
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHH
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIS 169 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~ 169 (481)
++.||||.+++.+|+. ++|||+||..||..|+.. ...||.|+..++. ..+.++..+.+.|.
T Consensus 1 ~~~Cpi~~~~~~~Pv~-~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~-~~l~~~~~l~~~i~ 61 (63)
T smart00504 1 EFLCPISLEVMKDPVI-LPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH-EDLIPNLALKSAIQ 61 (63)
T ss_pred CcCCcCCCCcCCCCEE-CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh-hhceeCHHHHHHHH
Confidence 3689999999999997 899999999999999985 6789999999865 66888888887774
No 4
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=1.4e-10 Score=121.39 Aligned_cols=70 Identities=23% Similarity=0.594 Sum_probs=60.2
Q ss_pred ccccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhh
Q 011622 99 ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISAL 171 (481)
Q Consensus 99 ~~~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l 171 (481)
.+..++..+.|+||+++|..|+. ++|||+||..||..|+. ....||.|+..+.. ..+..|..|.++|..+
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~Pvi-tpCgH~FCs~CI~~~l~-~~~~CP~Cr~~~~~-~~Lr~N~~L~~iVe~~ 88 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDVPVL-TSCSHTFCSLCIRRCLS-NQPKCPLCRAEDQE-SKLRSNWLVSEIVESF 88 (397)
T ss_pred cccccccccCCCcCchhhhCccC-CCCCCchhHHHHHHHHh-CCCCCCCCCCcccc-ccCccchHHHHHHHHH
Confidence 34567889999999999999996 99999999999999998 44689999999876 5688899998888544
No 5
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.01 E-value=1.1e-10 Score=91.44 Aligned_cols=62 Identities=29% Similarity=0.737 Sum_probs=36.0
Q ss_pred ccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHH
Q 011622 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALI 168 (481)
Q Consensus 103 l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li 168 (481)
++..+.|++|.++|..||.+..|.|.||+.||...+. ..||+|+++.+. .++..|..|+++|
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~-qD~~~NrqLd~~i 65 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWI-QDIQINRQLDSMI 65 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S--SS----HHHHHHH
T ss_pred HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHH-HHHHhhhhhhccC
Confidence 4567899999999999998899999999999998775 459999999987 7799999998875
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.00 E-value=2.7e-10 Score=108.06 Aligned_cols=50 Identities=30% Similarity=0.717 Sum_probs=42.9
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhhhhhc---------------CCCCCCCccccccC
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL---------------GNNECPACRTHCAS 154 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~---------------~~~~CP~CR~~~~~ 154 (481)
...+.|+||++.+.+|+. ++|||.||..||..|+.. ....||+||..++.
T Consensus 16 ~~~~~CpICld~~~dPVv-T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVV-TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCCcEE-cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 346889999999999997 899999999999999852 23589999998875
No 7
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.99 E-value=2.9e-10 Score=92.29 Aligned_cols=66 Identities=15% Similarity=0.283 Sum_probs=53.7
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhc
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (481)
+.|.||||..+|.+||. ++|||+|++.||..|+..+...||.|+.++.. ..+.+|..|.+.|..+.
T Consensus 3 ~~f~CpIt~~lM~dPVi-~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~-~~l~pn~~Lk~~I~~~~ 68 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVI-LPSGHTYERSAIERWLEQNGGTDPFTRQPLSE-SDLIPNRALKSAIEEWC 68 (73)
T ss_dssp GGGB-TTTSSB-SSEEE-ETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG-GGSEE-HHHHHHHHHHH
T ss_pred cccCCcCcCcHhhCcee-CCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc-ccceECHHHHHHHHHHH
Confidence 57899999999999997 99999999999999999767999999999887 67999999998886654
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.95 E-value=3.9e-10 Score=80.47 Aligned_cols=39 Identities=46% Similarity=1.157 Sum_probs=34.3
Q ss_pred ccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCc
Q 011622 109 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 148 (481)
Q Consensus 109 CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~C 148 (481)
|+||++.+.+|+.+++|||+||..||..|+.. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999767999999999999999996 6899988
No 9
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.91 E-value=3.2e-10 Score=114.08 Aligned_cols=69 Identities=25% Similarity=0.599 Sum_probs=60.2
Q ss_pred ccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhc
Q 011622 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (481)
Q Consensus 101 ~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (481)
..+...+.|-||.++|..|+. +||+|+||..||..++. ....||.|+..+.. ..++.|..|..+|..+.
T Consensus 18 k~lD~lLRC~IC~eyf~ip~i-tpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~E-s~Lr~n~il~Eiv~S~~ 86 (442)
T KOG0287|consen 18 KTLDDLLRCGICFEYFNIPMI-TPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTE-SDLRNNRILDEIVKSLN 86 (442)
T ss_pred hhhHHHHHHhHHHHHhcCcee-ccccchHHHHHHHHHhc-cCCCCCceecccch-hhhhhhhHHHHHHHHHH
Confidence 345667899999999999995 99999999999999999 45889999999987 67899999998886553
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.2e-09 Score=108.50 Aligned_cols=49 Identities=29% Similarity=0.649 Sum_probs=44.0
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
+....|.||++...+|.. +||||.||..||..|... ...||+||..+..
T Consensus 237 ~a~~kC~LCLe~~~~pSa-TpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~p 285 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSA-TPCGHIFCWSCILEWCSE-KAECPLCREKFQP 285 (293)
T ss_pred CCCCceEEEecCCCCCCc-CcCcchHHHHHHHHHHcc-ccCCCcccccCCC
Confidence 446799999999999996 999999999999999984 4779999998876
No 11
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.82 E-value=1.2e-09 Score=79.73 Aligned_cols=41 Identities=41% Similarity=0.983 Sum_probs=34.4
Q ss_pred cccccccccc--cceecccCCCcccHHHHhhhhhcCCCCCCCcc
Q 011622 108 QCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACR 149 (481)
Q Consensus 108 ~CpICl~~l~--~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR 149 (481)
.|+||++.|. ..+..++|||.||..||..|+.. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999885 44555899999999999999994 57999997
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.7e-09 Score=104.57 Aligned_cols=49 Identities=29% Similarity=0.717 Sum_probs=43.9
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhhc--CCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~~ 154 (481)
..+.|.||++.-++||. +.|||.||+.||.+|+.. +...||+|+..++.
T Consensus 46 ~~FdCNICLd~akdPVv-TlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVV-TLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CceeeeeeccccCCCEE-eecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 36889999999999996 999999999999999983 45689999998876
No 13
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.79 E-value=3.1e-09 Score=76.19 Aligned_cols=40 Identities=40% Similarity=1.075 Sum_probs=36.8
Q ss_pred ccccccccccceecccCCCcccHHHHhhhhh-cCCCCCCCc
Q 011622 109 CPICLGIIKKTRTVMECLHRFCRECIDKSMR-LGNNECPAC 148 (481)
Q Consensus 109 CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~-~~~~~CP~C 148 (481)
|+||++.+..|+.+++|||+||..||..|+. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999999996699999999999999998 566789988
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4.2e-09 Score=98.02 Aligned_cols=51 Identities=31% Similarity=0.924 Sum_probs=42.9
Q ss_pred cCccccccccccccc--ceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCC
Q 011622 104 RKDVQCPICLGIIKK--TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRR 156 (481)
Q Consensus 104 ~~~l~CpICl~~l~~--Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~ 156 (481)
...+.|||||+-+.. |+. +.|||.||..||...++ ....||.|++.++.+.
T Consensus 129 ~~~~~CPiCl~~~sek~~vs-TkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVS-TKCGHVFCSQCIKDALK-NTNKCPTCRKKITHKQ 181 (187)
T ss_pred ccccCCCceecchhhccccc-cccchhHHHHHHHHHHH-hCCCCCCcccccchhh
Confidence 445899999998875 454 89999999999999999 5588999999887633
No 15
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.76 E-value=4.2e-09 Score=104.29 Aligned_cols=69 Identities=23% Similarity=0.478 Sum_probs=56.0
Q ss_pred cccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhcc
Q 011622 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP 173 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p 173 (481)
.+...+.|-||...|..|+. ++|||+||+.||..++. ....||+||..+.. ..++.+..+..+++.+..
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~-TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~e-srlr~~s~~~ei~es~~~ 89 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCE-TTCGHTFCSLCIRRHLG-TQPFCPVCREDPCE-SRLRGSSGSREINESHAR 89 (391)
T ss_pred cchhHHHhhhhhheeeccee-cccccchhHHHHHHHhc-CCCCCccccccHHh-hhcccchhHHHHHHhhhh
Confidence 34557899999999999996 99999999999999998 55889999998765 346777777766655443
No 16
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.75 E-value=4.8e-09 Score=78.73 Aligned_cols=46 Identities=33% Similarity=0.899 Sum_probs=40.1
Q ss_pred cccccccccccccceecccCCCc-ccHHHHhhhhhcCCCCCCCcccccc
Q 011622 106 DVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCA 153 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~ 153 (481)
+..|+||++...+++. +||||. ||..|+..|+. ....||.||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVL-LPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEE-ETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEE-eCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 4689999999999886 999999 99999999998 6689999999875
No 17
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.74 E-value=5.5e-09 Score=102.76 Aligned_cols=49 Identities=41% Similarity=0.855 Sum_probs=40.7
Q ss_pred Ccccccccccccccc-------eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~P-------v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
....|+||++.+..+ ..+++|+|.||..||..|+. ...+||+||..+..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEeeE
Confidence 356899999987653 13478999999999999998 56899999998875
No 18
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.74 E-value=6.4e-09 Score=74.26 Aligned_cols=44 Identities=48% Similarity=1.124 Sum_probs=38.8
Q ss_pred cccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCcccc
Q 011622 108 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTH 151 (481)
Q Consensus 108 ~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~ 151 (481)
.|+||++.+..++.+.+|||.||..|+..|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 49999999988887677999999999999998656789999875
No 19
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.9e-09 Score=103.63 Aligned_cols=84 Identities=32% Similarity=0.687 Sum_probs=66.9
Q ss_pred cccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhcc--------
Q 011622 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP-------- 173 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p-------- 173 (481)
.+.+.+.|+||++.|..|+ +++|||+||..||..++. ....||.||. ... .+.+|..+.+++..+..
T Consensus 9 ~~~~~~~C~iC~~~~~~p~-~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~--~~~~n~~l~~~~~~~~~~~~~~~~~ 83 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPV-LLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR--NLRPNVLLANLVERLRQLRLSRPLG 83 (386)
T ss_pred hccccccChhhHHHhhcCc-cccccchHhHHHHHHhcC-CCcCCcccCC-chh--ccCccHHHHHHHHHHHhcCCccccc
Confidence 3567899999999999995 599999999999999998 6689999996 332 57788888888866542
Q ss_pred ----hhhhhhHHHHhccHHHH
Q 011622 174 ----DIDKYEEEELAFHEEER 190 (481)
Q Consensus 174 ----~~~~~ee~l~~fceeek 190 (481)
.|..|.+.+.+||+.+.
T Consensus 84 ~~~~~c~~~~~~~~~~c~~~~ 104 (386)
T KOG2177|consen 84 SKEELCEKHGEELKLFCEEDE 104 (386)
T ss_pred ccchhhhhcCCcceEEecccc
Confidence 35666666777777765
No 20
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.73 E-value=4.4e-09 Score=106.16 Aligned_cols=79 Identities=29% Similarity=0.690 Sum_probs=68.8
Q ss_pred ccccccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCC---CCCCCChhhhHHHHhhcc
Q 011622 97 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR---RSLRDDPNYDALISALYP 173 (481)
Q Consensus 97 ~~~~~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~---~~l~~n~~L~~li~~l~p 173 (481)
.+....+...+.|.+|..+|.++.+++.|.|+||..||..++.. +..||.|...+... ..++.+..|++++.+++|
T Consensus 6 ~vk~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVP 84 (331)
T KOG2660|consen 6 RVKLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVP 84 (331)
T ss_pred hhhhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHHcc
Confidence 34555677889999999999999999999999999999999994 79999999987653 367889999999999999
Q ss_pred hhh
Q 011622 174 DID 176 (481)
Q Consensus 174 ~~~ 176 (481)
...
T Consensus 85 gl~ 87 (331)
T KOG2660|consen 85 GLQ 87 (331)
T ss_pred hHH
Confidence 765
No 21
>PHA02926 zinc finger-like protein; Provisional
Probab=98.53 E-value=4.4e-08 Score=94.38 Aligned_cols=52 Identities=31% Similarity=0.750 Sum_probs=40.4
Q ss_pred ccCcccccccccccccc--------eecccCCCcccHHHHhhhhhcC-----CCCCCCccccccC
Q 011622 103 IRKDVQCPICLGIIKKT--------RTVMECLHRFCRECIDKSMRLG-----NNECPACRTHCAS 154 (481)
Q Consensus 103 l~~~l~CpICl~~l~~P--------v~i~~CgH~FC~~CI~~~l~~~-----~~~CP~CR~~~~~ 154 (481)
...+..|+||++....+ -.+.+|+|.||..||..|.... ...||.||..+..
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 45578999999976432 1247999999999999999732 3469999998764
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.48 E-value=8.8e-08 Score=65.91 Aligned_cols=39 Identities=51% Similarity=1.201 Sum_probs=34.6
Q ss_pred ccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCc
Q 011622 109 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 148 (481)
Q Consensus 109 CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~C 148 (481)
|+||++....++. ++|+|.||..|+..|+......||.|
T Consensus 1 C~iC~~~~~~~~~-~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVV-LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEE-ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8999999888876 89999999999999998556789987
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=7.5e-08 Score=102.18 Aligned_cols=48 Identities=35% Similarity=0.745 Sum_probs=42.7
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhhcC----CCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG----NNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~----~~~CP~CR~~~~~ 154 (481)
...||||+....-|+. +.|||.||..||..+|..+ ...||+|+..|..
T Consensus 186 ~~~CPICL~~~~~p~~-t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVR-TNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccc-cccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7899999999999986 7899999999999999733 4589999999887
No 24
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.43 E-value=8.5e-07 Score=90.06 Aligned_cols=49 Identities=31% Similarity=0.716 Sum_probs=39.4
Q ss_pred cccccccccc-cccce---ecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGI-IKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~-l~~Pv---~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
+..||||... +.+|- .+.+|||.||..||..+|..+...||.|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 4579999983 44553 3347999999999999887677899999998876
No 25
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.40 E-value=1.1e-07 Score=69.57 Aligned_cols=36 Identities=33% Similarity=0.944 Sum_probs=22.2
Q ss_pred cccccccccc----ceecccCCCcccHHHHhhhhhcC---CCCCC
Q 011622 109 CPICLGIIKK----TRTVMECLHRFCRECIDKSMRLG---NNECP 146 (481)
Q Consensus 109 CpICl~~l~~----Pv~i~~CgH~FC~~CI~~~l~~~---~~~CP 146 (481)
||||.+ |.. |+. ++|||+||..||.+++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~-L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMV-LPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE--SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEE-EeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 877 886 8899999999999999843 45676
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=9.7e-08 Score=93.95 Aligned_cols=50 Identities=26% Similarity=0.537 Sum_probs=43.8
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhh-hhhcCCCCCCCccccccC
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDK-SMRLGNNECPACRTHCAS 154 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~-~l~~~~~~CP~CR~~~~~ 154 (481)
..++.|+||++....|+. ++|||.||..||.. |-......||+||+.+..
T Consensus 213 ~~d~kC~lC~e~~~~ps~-t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSC-TPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCccc-ccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 457899999999999997 99999999999999 766555669999998775
No 27
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.39 E-value=1.9e-07 Score=68.35 Aligned_cols=42 Identities=31% Similarity=0.825 Sum_probs=34.7
Q ss_pred ccccccccc--ccceecccCCCcccHHHHhhhhhcCCCCCCCccc
Q 011622 108 QCPICLGII--KKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (481)
Q Consensus 108 ~CpICl~~l--~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 150 (481)
.|+||...+ ..+..+++|||+||..|+..+. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999998 3344569999999999999988 35678999985
No 28
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.36 E-value=2.5e-07 Score=75.21 Aligned_cols=41 Identities=34% Similarity=0.747 Sum_probs=33.1
Q ss_pred ccccccccccc------------ceecccCCCcccHHHHhhhhhcCCCCCCCcc
Q 011622 108 QCPICLGIIKK------------TRTVMECLHRFCRECIDKSMRLGNNECPACR 149 (481)
Q Consensus 108 ~CpICl~~l~~------------Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR 149 (481)
.|+||+..|.+ ++.+.+|||.|+..||..|+. ...+||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK-QNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT-TSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh-cCCcCCCCC
Confidence 49999999832 345568999999999999998 457999997
No 29
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.8e-07 Score=101.93 Aligned_cols=61 Identities=25% Similarity=0.637 Sum_probs=51.5
Q ss_pred ccccccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCC
Q 011622 97 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLR 159 (481)
Q Consensus 97 ~~~~~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~ 159 (481)
...+..+..-+.||+|..-+.+.| |+.|||.||..||.+.+..+...||.|.+.|.. .++.
T Consensus 634 ~EElk~yK~~LkCs~Cn~R~Kd~v-I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga-nDv~ 694 (698)
T KOG0978|consen 634 AEELKEYKELLKCSVCNTRWKDAV-ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA-NDVH 694 (698)
T ss_pred HHHHHHHHhceeCCCccCchhhHH-HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc-cccc
Confidence 344555677899999998888888 599999999999999998788899999999987 3343
No 30
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=8.7e-07 Score=91.28 Aligned_cols=48 Identities=27% Similarity=0.674 Sum_probs=41.2
Q ss_pred ccccccccccc--cceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 107 VQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 107 l~CpICl~~l~--~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
..|+||++.|. +-+.++||.|.|+..||..|+......||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 48999999988 4566799999999999999999665679999996654
No 31
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=9.9e-07 Score=88.25 Aligned_cols=49 Identities=37% Similarity=0.752 Sum_probs=41.9
Q ss_pred cccccccccccc--cceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~--~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
...|.||+.-|. +-+.++||.|.|+..|+.+|+..-...||+||++++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 478999999776 3466699999999999999998667899999998764
No 32
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4.6e-06 Score=83.64 Aligned_cols=48 Identities=29% Similarity=0.675 Sum_probs=43.2
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.-.|+||+....-|+. ++|+|.||+-||.-.......+||+||.+|.+
T Consensus 7 ~~eC~IC~nt~n~Pv~-l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVN-LYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcCcc-ccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 3469999999999986 99999999999998877677889999999987
No 33
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.81 E-value=1.1e-05 Score=62.64 Aligned_cols=44 Identities=27% Similarity=0.579 Sum_probs=32.0
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhhhhh-cCCCCCCC
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR-LGNNECPA 147 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~-~~~~~CP~ 147 (481)
...+.|||.+..|.+||....|+|+|....|..|+. .+...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 346899999999999998789999999999999994 35568998
No 34
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=1e-05 Score=83.00 Aligned_cols=47 Identities=23% Similarity=0.676 Sum_probs=39.4
Q ss_pred Cccccccccccc-cc------------ceecccCCCcccHHHHhhhhhcCCCCCCCcccccc
Q 011622 105 KDVQCPICLGII-KK------------TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (481)
Q Consensus 105 ~~l~CpICl~~l-~~------------Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 153 (481)
.+..|.||++-+ .. |.. +||||.|+..|+..|+. +..+||.||.++.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKr-LpCGHilHl~CLknW~E-RqQTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKR-LPCGHILHLHCLKNWLE-RQQTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCccc-ccccceeeHHHHHHHHH-hccCCCcccCccc
Confidence 467899999974 33 355 89999999999999999 6799999999854
No 35
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.78 E-value=1.4e-05 Score=84.56 Aligned_cols=69 Identities=25% Similarity=0.641 Sum_probs=54.9
Q ss_pred ccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhc
Q 011622 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (481)
Q Consensus 103 l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (481)
+...+.|++|..++.+|+..+.|||.||..|+..|+.. ...||.|+..+.....+.........+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLP 86 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcc
Confidence 67789999999999999974599999999999999995 6899999998877555554444455554443
No 36
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1e-05 Score=85.20 Aligned_cols=50 Identities=34% Similarity=0.840 Sum_probs=45.2
Q ss_pred ccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 103 l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
+..++.|.||..++..|++ +||||+||..||.+.+. ....||.||..+..
T Consensus 81 ~~sef~c~vc~~~l~~pv~-tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVV-TPCGHSFCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCcc-ccccccccHHHHHHHhc-cCCCCccccccccc
Confidence 4678999999999999998 79999999999999887 56899999998875
No 37
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=8.3e-06 Score=89.66 Aligned_cols=47 Identities=30% Similarity=0.689 Sum_probs=40.9
Q ss_pred ccccccccccccc-----ceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKK-----TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~-----Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
...|+||.+.+.. |.. ++|+|.||..|+..|++ ...+||.||..+..
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~r-L~C~Hifh~~CL~~W~e-r~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKR-LPCGHIFHDSCLRSWFE-RQQTCPTCRTVLYD 342 (543)
T ss_pred CCeeeeechhhccccccccce-eecccchHHHHHHHHHH-HhCcCCcchhhhhc
Confidence 6789999999998 554 99999999999999999 56999999995443
No 38
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.74 E-value=2e-05 Score=65.72 Aligned_cols=48 Identities=29% Similarity=0.537 Sum_probs=36.7
Q ss_pred cccccccccccc------------cceecccCCCcccHHHHhhhhhc--CCCCCCCcccccc
Q 011622 106 DVQCPICLGIIK------------KTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCA 153 (481)
Q Consensus 106 ~l~CpICl~~l~------------~Pv~i~~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~ 153 (481)
+..|.||...|. -|+.+-.|+|.|+..||.+|+.. ....||.||.++.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 446777666654 24444679999999999999983 3579999999765
No 39
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.7e-05 Score=78.72 Aligned_cols=51 Identities=25% Similarity=0.586 Sum_probs=43.3
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhhhhh-cCCCCCCCccccccC
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR-LGNNECPACRTHCAS 154 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~-~~~~~CP~CR~~~~~ 154 (481)
.....||+|......|.++.+|+|.||+.||...+. ..+.+||.|...+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 346789999999999999888999999999988765 346899999987763
No 40
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.66 E-value=2e-05 Score=74.73 Aligned_cols=59 Identities=20% Similarity=0.464 Sum_probs=45.9
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHH
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALI 168 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li 168 (481)
.+.|.||...|..||. +.|||.||..|...-+.. ...|-+|.+.... .+.+...|+.++
T Consensus 196 PF~C~iCKkdy~spvv-t~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~G--~f~V~~d~~kmL 254 (259)
T COG5152 196 PFLCGICKKDYESPVV-TECGHSFCSLCAIRKYQK-GDECGVCGKATYG--RFWVVSDLQKML 254 (259)
T ss_pred ceeehhchhhccchhh-hhcchhHHHHHHHHHhcc-CCcceecchhhcc--ceeHHhhHHHHH
Confidence 5799999999999997 999999999999887773 4789999886554 234444444444
No 41
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.57 E-value=4.7e-05 Score=76.27 Aligned_cols=44 Identities=30% Similarity=0.861 Sum_probs=39.8
Q ss_pred ccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccc
Q 011622 107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (481)
Q Consensus 107 l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 150 (481)
+.||+|..++.+|+.+..|+|.||..||...|-...+.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 89999999999999855799999999999888767799999965
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.41 E-value=6e-05 Score=79.22 Aligned_cols=49 Identities=27% Similarity=0.642 Sum_probs=40.1
Q ss_pred cccCcccccccccccccce---ecccCCCcccHHHHhhhhhcCCCCCCCcccccc
Q 011622 102 EIRKDVQCPICLGIIKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~Pv---~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 153 (481)
.+.+.-+||||++.+...+ ..+.|.|+|...|+..|+. .+||+||....
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 3455679999999998654 3478999999999999987 77999997544
No 43
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=6.1e-05 Score=57.45 Aligned_cols=46 Identities=24% Similarity=0.505 Sum_probs=40.2
Q ss_pred ccccccccccccceecccCCC-cccHHHHhhhhhcCCCCCCCcccccc
Q 011622 107 VQCPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHCA 153 (481)
Q Consensus 107 l~CpICl~~l~~Pv~i~~CgH-~FC~~CI~~~l~~~~~~CP~CR~~~~ 153 (481)
..|.||.+-..+.|. .-||| -.|+.|-.+.++.....||.||+++.
T Consensus 8 dECTICye~pvdsVl-YtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVL-YTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHH-HHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 469999999999884 89999 57999999988866789999999875
No 44
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00013 Score=73.20 Aligned_cols=47 Identities=23% Similarity=0.581 Sum_probs=41.6
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.+.|-||...|..||. +.|+|+||..|...-+. ....|++|...+..
T Consensus 241 Pf~c~icr~~f~~pVv-t~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVV-TKCGHYFCEVCALKPYQ-KGEKCYVCSQQTHG 287 (313)
T ss_pred Cccccccccccccchh-hcCCceeehhhhccccc-cCCcceeccccccc
Confidence 5679999999999997 99999999999988887 45889999987654
No 45
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.23 E-value=0.00018 Score=75.29 Aligned_cols=34 Identities=21% Similarity=0.821 Sum_probs=30.8
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhhhh
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM 138 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l 138 (481)
++++.||||..+|.+|+. ++|+|..|..|....+
T Consensus 2 eeelkc~vc~~f~~epii-l~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPII-LPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCceE-eecccHHHHHHHHhhc
Confidence 568999999999999995 9999999999987665
No 46
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.15 E-value=0.00013 Score=82.28 Aligned_cols=50 Identities=22% Similarity=0.673 Sum_probs=39.7
Q ss_pred cCccccccccccccc-----c-eecccCCCcccHHHHhhhhh-cCCCCCCCcccccc
Q 011622 104 RKDVQCPICLGIIKK-----T-RTVMECLHRFCRECIDKSMR-LGNNECPACRTHCA 153 (481)
Q Consensus 104 ~~~l~CpICl~~l~~-----P-v~i~~CgH~FC~~CI~~~l~-~~~~~CP~CR~~~~ 153 (481)
.....|+||..++.. | .++..|.|.|+..|+.+|++ .++++||+||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 445689999998861 2 33466999999999999998 45679999998765
No 47
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.98 E-value=0.003 Score=62.12 Aligned_cols=44 Identities=25% Similarity=0.707 Sum_probs=33.7
Q ss_pred ccccccccc-ccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 108 QCPICLGII-KKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 108 ~CpICl~~l-~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.|-.|...- ..|..++.|+|+||..|...... ..||.|+..+..
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIRI 49 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCCc---cccccccceeee
Confidence 577676533 57788899999999999866443 389999998655
No 48
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00045 Score=71.72 Aligned_cols=50 Identities=30% Similarity=0.763 Sum_probs=39.5
Q ss_pred cCcccccccccccccce------ec-ccCCCcccHHHHhhhhhcC------CCCCCCcccccc
Q 011622 104 RKDVQCPICLGIIKKTR------TV-MECLHRFCRECIDKSMRLG------NNECPACRTHCA 153 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv------~i-~~CgH~FC~~CI~~~l~~~------~~~CP~CR~~~~ 153 (481)
..+..|.||++....++ .| .+|.|.||..||..|-... ...||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 44789999999887654 12 5699999999999998422 478999999654
No 49
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.85 E-value=0.00024 Score=78.87 Aligned_cols=50 Identities=28% Similarity=0.561 Sum_probs=40.2
Q ss_pred cCcccccccccccccceec--ccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 104 RKDVQCPICLGIIKKTRTV--MECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i--~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.....||+|+..+.+-... .+|+|.||..||..|.+ ...+||+||..|..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence 3456899999877654322 57999999999999998 55899999998765
No 50
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0014 Score=68.43 Aligned_cols=49 Identities=29% Similarity=0.697 Sum_probs=39.1
Q ss_pred cccccccccccccc----eecccCCCcccHHHHhhhhhc-CCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKT----RTVMECLHRFCRECIDKSMRL-GNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~P----v~i~~CgH~FC~~CI~~~l~~-~~~~CP~CR~~~~~ 154 (481)
..+||||++-+.-| +.++.|||.|-..||..|+.. ....||.|......
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 46899999988765 334889999999999999962 23589999886654
No 51
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.00052 Score=72.98 Aligned_cols=51 Identities=29% Similarity=0.614 Sum_probs=39.5
Q ss_pred cCcccccccccccc-----cc-----------eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 104 RKDVQCPICLGIIK-----KT-----------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 104 ~~~l~CpICl~~l~-----~P-----------v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
+....|+||+..+. .| .+++||.|.|+..|+..|+..-+-.||+||.+++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 44568999998653 11 33479999999999999999544589999998753
No 52
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.00058 Score=67.83 Aligned_cols=50 Identities=26% Similarity=0.562 Sum_probs=40.2
Q ss_pred Cccccccccccccc----------ceecccCCCcccHHHHhhhhhc-CCCCCCCccccccCC
Q 011622 105 KDVQCPICLGIIKK----------TRTVMECLHRFCRECIDKSMRL-GNNECPACRTHCASR 155 (481)
Q Consensus 105 ~~l~CpICl~~l~~----------Pv~i~~CgH~FC~~CI~~~l~~-~~~~CP~CR~~~~~~ 155 (481)
++..|+||..-+.. ... +.|+|.|+..||.-|.-. ...+||.|+..+...
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~-LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYK-LSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhhee-eecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 46689999886653 344 889999999999999874 457999999988763
No 53
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.57 E-value=0.00077 Score=72.18 Aligned_cols=50 Identities=28% Similarity=0.710 Sum_probs=42.0
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhhhhh----cCCCCCCCccccccC
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----LGNNECPACRTHCAS 154 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~----~~~~~CP~CR~~~~~ 154 (481)
.....|.+|.+.-.+++. ..|.|.||+.||..++. ..+-+||.|...++.
T Consensus 534 k~~~~C~lc~d~aed~i~-s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIE-SSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhhhHh-hhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 346689999999999996 99999999999988875 234689999988765
No 54
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0013 Score=67.53 Aligned_cols=47 Identities=30% Similarity=0.631 Sum_probs=41.7
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCcccccc
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 153 (481)
++..||||.--..+.|+ .||+|.-|+.||.+.+- +.+.|-.|++.+.
T Consensus 421 Ed~lCpICyA~pi~Avf-~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVF-APCSHRSCYGCITQHLM-NCKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhc-cCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence 46789999999889997 99999999999999988 6689999998665
No 55
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0029 Score=65.77 Aligned_cols=48 Identities=23% Similarity=0.580 Sum_probs=34.9
Q ss_pred ccccccccccccce---ecccCCCcccHHHHhhhhhcC--CCCCCCccccccC
Q 011622 107 VQCPICLGIIKKTR---TVMECLHRFCRECIDKSMRLG--NNECPACRTHCAS 154 (481)
Q Consensus 107 l~CpICl~~l~~Pv---~i~~CgH~FC~~CI~~~l~~~--~~~CP~CR~~~~~ 154 (481)
..|.||.+.+-.-. .+-.|||+|+..|+..|+... +..||.|+..+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 46999977665321 113499999999999999843 2489999955544
No 56
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.43 E-value=0.00086 Score=54.13 Aligned_cols=49 Identities=22% Similarity=0.507 Sum_probs=24.2
Q ss_pred cccccccccccc-c---ceec---ccCCCcccHHHHhhhhhc--C--------CCCCCCccccccC
Q 011622 106 DVQCPICLGIIK-K---TRTV---MECLHRFCRECIDKSMRL--G--------NNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~-~---Pv~i---~~CgH~FC~~CI~~~l~~--~--------~~~CP~CR~~~~~ 154 (481)
+..|+||+..+. . |..+ ..|+++|+..||..||.. . .+.||.|+.+++-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 467999998765 2 3322 269999999999999962 1 1369999998864
No 57
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.20 E-value=0.0019 Score=67.28 Aligned_cols=48 Identities=25% Similarity=0.603 Sum_probs=39.3
Q ss_pred cccccccccccceecccCCCcccHHHHhhhhhc-CCCCCCCccccccCCC
Q 011622 108 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPACRTHCASRR 156 (481)
Q Consensus 108 ~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~-~~~~CP~CR~~~~~~~ 156 (481)
.|-||-+--++-. |-||||..|..|+..|-.. ....||.||..+..+.
T Consensus 371 LCKICaendKdvk-IEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVK-IEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcc-cccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 6899988766544 5899999999999999863 3579999999887654
No 58
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0028 Score=65.39 Aligned_cols=47 Identities=30% Similarity=0.704 Sum_probs=39.1
Q ss_pred cccccccccccccceecccCCC-cccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH-~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
...|-||+.-.++.+. +||.| -.|..|.....- ..+.||.||.++..
T Consensus 290 gkeCVIClse~rdt~v-LPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVV-LPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEE-ecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence 4579999999999985 99999 569999877653 34789999998865
No 59
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.01 E-value=0.0044 Score=50.97 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=28.2
Q ss_pred eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 120 RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 120 v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
+..--|.|.|+..||.+|+. ..+.||+|+..+..
T Consensus 49 v~wG~CnHaFH~HCI~rWL~-Tk~~CPld~q~w~~ 82 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLD-TKGVCPLDRQTWVL 82 (88)
T ss_pred EEEEecchHHHHHHHHHHHh-hCCCCCCCCceeEE
Confidence 43345999999999999999 56899999997653
No 60
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.99 E-value=0.0047 Score=61.98 Aligned_cols=57 Identities=14% Similarity=0.325 Sum_probs=44.2
Q ss_pred cCccccccccccccc---ceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCCh
Q 011622 104 RKDVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162 (481)
Q Consensus 104 ~~~l~CpICl~~l~~---Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~ 162 (481)
...+.|||+...|.. -|.+.+|||.|+..||...- ....||+|..+|...+.+..|+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Lnp 170 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLNP 170 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEecC
Confidence 457899999998853 36668999999999999873 3467999999998754444443
No 61
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.0061 Score=61.37 Aligned_cols=47 Identities=32% Similarity=0.793 Sum_probs=38.7
Q ss_pred ccccccc-ccccc---eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 108 QCPICLG-IIKKT---RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 108 ~CpICl~-~l~~P---v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.||+|.. .+.+| ..+-+|+|+.|.+|+...+..+...||.|...+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 5999985 56666 22358999999999999999888999999887654
No 62
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.85 E-value=0.0064 Score=45.68 Aligned_cols=41 Identities=27% Similarity=0.639 Sum_probs=31.4
Q ss_pred ccccccc--ccccceecccCC-----CcccHHHHhhhhhc-CCCCCCCcc
Q 011622 108 QCPICLG--IIKKTRTVMECL-----HRFCRECIDKSMRL-GNNECPACR 149 (481)
Q Consensus 108 ~CpICl~--~l~~Pv~i~~Cg-----H~FC~~CI~~~l~~-~~~~CP~CR 149 (481)
.|.||++ .-.+|. +.||. |.|+..|+.+|+.. +...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l-~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPL-VSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCee-EeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 333555 48885 78999999999973 356899995
No 63
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.01 Score=58.50 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=42.9
Q ss_pred cCcccccccccccccce---ecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 104 RKDVQCPICLGIIKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv---~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
...+.||||.+.|.+.+ .+-+|||.||..|+.+++. ....||+|-.++..
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcc
Confidence 35789999999999763 3478999999999999998 55899999998886
No 64
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.18 E-value=0.017 Score=43.35 Aligned_cols=44 Identities=30% Similarity=0.720 Sum_probs=22.4
Q ss_pred ccccccccccc---eecccCCCcccHHHHhhhhhcCCCCCCCccccc
Q 011622 109 CPICLGIIKKT---RTVMECLHRFCRECIDKSMRLGNNECPACRTHC 152 (481)
Q Consensus 109 CpICl~~l~~P---v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~ 152 (481)
||+|.+.+... ..--+||+.+|..|....+....+.||.||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888877321 111358999999999998875678999999865
No 65
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=95.07 E-value=0.018 Score=56.61 Aligned_cols=49 Identities=29% Similarity=0.810 Sum_probs=38.0
Q ss_pred ccccccccc-ccccce---eccc-CCCcccHHHHhhhhhcCCCCCC--CccccccC
Q 011622 106 DVQCPICLG-IIKKTR---TVME-CLHRFCRECIDKSMRLGNNECP--ACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~-~l~~Pv---~i~~-CgH~FC~~CI~~~l~~~~~~CP--~CR~~~~~ 154 (481)
+-.||||.. .+-+|- .+-| |-|..|.+|+.+.|..+...|| -|.+.+..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 448999985 555662 1234 9999999999999998889999 78876544
No 66
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.011 Score=61.10 Aligned_cols=45 Identities=29% Similarity=0.560 Sum_probs=35.3
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
....|.||++-.++.+. +||||..| |..-.. ....||+||..+..
T Consensus 304 ~p~lcVVcl~e~~~~~f-vpcGh~cc--ct~cs~--~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVF-VPCGHVCC--CTLCSK--HLPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCccceee-ecCCcEEE--chHHHh--hCCCCchhHHHHHH
Confidence 35579999999999887 99999877 765443 34569999997754
No 67
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.0061 Score=61.37 Aligned_cols=42 Identities=33% Similarity=0.761 Sum_probs=35.2
Q ss_pred cccccccccccccceecccCCC-cccHHHHhhhhhcCCCCCCCcccccc
Q 011622 106 DVQCPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHCA 153 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH-~FC~~CI~~~l~~~~~~CP~CR~~~~ 153 (481)
...|.||++...+-++ ++||| .-|..|-.. .+.||+||..+.
T Consensus 300 ~~LC~ICmDaP~DCvf-LeCGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVF-LECGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEE-eecCcEEeehhhccc-----cccCchHHHHHH
Confidence 6789999999999997 99999 559999654 358999998654
No 68
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.02 Score=58.01 Aligned_cols=63 Identities=25% Similarity=0.513 Sum_probs=47.4
Q ss_pred ccccccccccc------cceecccCCCcccHHHHhhhhhcCCCCCCCccccc--cC--CCCCCCChhhhHHHHh
Q 011622 107 VQCPICLGIIK------KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC--AS--RRSLRDDPNYDALISA 170 (481)
Q Consensus 107 l~CpICl~~l~------~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~--~~--~~~l~~n~~L~~li~~ 170 (481)
+.|-||-..|. .|.. +.|||+||..|+...+......||.||.+. .. ...+..|+.+..++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~-l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~ 76 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRV-LKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEH 76 (296)
T ss_pred CceeecCccccccCcccCCcc-cccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHH
Confidence 57999988775 4654 789999999999999887778899999983 22 1245667776666644
No 69
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.54 E-value=0.015 Score=65.79 Aligned_cols=46 Identities=35% Similarity=0.800 Sum_probs=38.0
Q ss_pred ccccccccccccceecccCCCcccHHHHhhhhhcC-CCCCCCccccccC
Q 011622 107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG-NNECPACRTHCAS 154 (481)
Q Consensus 107 l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~-~~~CP~CR~~~~~ 154 (481)
+.|+||++ ...++ ++.|+|.||..|+...+... ...||.||..+..
T Consensus 455 ~~c~ic~~-~~~~~-it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFF-ITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccce-eecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 55555 59999999999999988743 3469999987655
No 70
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.017 Score=49.81 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=33.8
Q ss_pred cccccccccccccc----------------eecccCCCcccHHHHhhhhhcCCCCCCCcccc
Q 011622 106 DVQCPICLGIIKKT----------------RTVMECLHRFCRECIDKSMRLGNNECPACRTH 151 (481)
Q Consensus 106 ~l~CpICl~~l~~P----------------v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~ 151 (481)
--.|+||..-+-++ |.--.|.|.|+..||.+|++ ..+.||+|...
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlk-tr~vCPLdn~e 106 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLK-TRNVCPLDNKE 106 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHh-hcCcCCCcCcc
Confidence 45799987654321 11135999999999999999 55899999874
No 71
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.48 E-value=0.014 Score=60.98 Aligned_cols=49 Identities=27% Similarity=0.669 Sum_probs=38.6
Q ss_pred Ccccccccccccc-cc--eecccCCCcccHHHHhhhhh-cCCCCCCCcccccc
Q 011622 105 KDVQCPICLGIIK-KT--RTVMECLHRFCRECIDKSMR-LGNNECPACRTHCA 153 (481)
Q Consensus 105 ~~l~CpICl~~l~-~P--v~i~~CgH~FC~~CI~~~l~-~~~~~CP~CR~~~~ 153 (481)
-.+.|-.|.+.+- .| ...+||.|+|+..|+..++. .+..+||.||+..+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 4789999998764 22 33489999999999999986 35579999996554
No 72
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.46 E-value=0.026 Score=50.86 Aligned_cols=57 Identities=26% Similarity=0.486 Sum_probs=45.2
Q ss_pred cccccccccCcccccccccccccceeccc---CCCcccHHHHhhhhhc--CCCCCCCccccccC
Q 011622 96 VFVELPEIRKDVQCPICLGIIKKTRTVME---CLHRFCRECIDKSMRL--GNNECPACRTHCAS 154 (481)
Q Consensus 96 ~~~~~~~l~~~l~CpICl~~l~~Pv~i~~---CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~~ 154 (481)
+.++.+. ..+.|-||.+...+..++-| ||-..|..|....|+. ..+.||+|++.|.+
T Consensus 72 mnvF~d~--~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 72 MNVFLDP--KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred heeecCC--CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 3344444 57899999999888777544 9999999999999883 34689999998876
No 73
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.32 E-value=0.025 Score=57.96 Aligned_cols=65 Identities=20% Similarity=0.397 Sum_probs=48.4
Q ss_pred ccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhcchh
Q 011622 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI 175 (481)
Q Consensus 103 l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~~ 175 (481)
..+.+.||||...+..|++--+=||.-|..|-.+ ..+.||.||.++.. .....+..+++....-|
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~----~R~~amEkV~e~~~vpC 109 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN----IRCRAMEKVAEAVLVPC 109 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc----HHHHHHHHHHHhceecc
Confidence 4457899999999999985334479999999754 34789999998874 25566677776665433
No 74
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.012 Score=48.13 Aligned_cols=46 Identities=30% Similarity=0.586 Sum_probs=33.5
Q ss_pred cccccccccc------------cceecccCCCcccHHHHhhhhhc--CCCCCCCcccccc
Q 011622 108 QCPICLGIIK------------KTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCA 153 (481)
Q Consensus 108 ~CpICl~~l~------------~Pv~i~~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~ 153 (481)
.|-||.-.|. -|..+--|.|.|...||.+|+.. +...||.||..+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 5666655553 24433469999999999999983 3468999998664
No 75
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.25 E-value=0.029 Score=43.14 Aligned_cols=46 Identities=26% Similarity=0.555 Sum_probs=35.8
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
....|-.|...-...+. ++|||..|..|..-+ +.+-||.|.+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~-~pCgH~I~~~~f~~~---rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTV-LPCGHLICDNCFPGE---RYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEcccccccccc-ccccceeeccccChh---hccCCCCCCCcccC
Confidence 34567778777666665 999999999997644 45779999998865
No 76
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.027 Score=57.68 Aligned_cols=48 Identities=21% Similarity=0.415 Sum_probs=40.4
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccc
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 152 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~ 152 (481)
.+...||||+....+|..+.--|-.||+.||..++. ..+.||+-..+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcc
Confidence 346789999999999987666799999999999999 668999865544
No 77
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.94 E-value=0.032 Score=42.11 Aligned_cols=45 Identities=20% Similarity=0.558 Sum_probs=25.4
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhh----cCCCCCCCcccc
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----LGNNECPACRTH 151 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~----~~~~~CP~CR~~ 151 (481)
.+.|||....+..|+....|.|.-|.+ +..|+. .+...||.|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 468999999999999989999998866 344543 344689999763
No 78
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.78 E-value=0.015 Score=58.78 Aligned_cols=50 Identities=28% Similarity=0.507 Sum_probs=38.9
Q ss_pred Ccccccccccccc-cc-eecccCCCcccHHHHhhhhhc----------------------CCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIK-KT-RTVMECLHRFCRECIDKSMRL----------------------GNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~-~P-v~i~~CgH~FC~~CI~~~l~~----------------------~~~~CP~CR~~~~~ 154 (481)
....|.||+.-|. .| ++.++|.|.|+..|+.+++.. ....||+||..+..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 4678999998776 34 566899999999999988731 12369999998754
No 79
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=92.50 E-value=0.13 Score=53.42 Aligned_cols=109 Identities=23% Similarity=0.297 Sum_probs=71.7
Q ss_pred HHHHHHhhhcc-cccceeEEEEeecCCCCCCCCCCC-----------------cccccCcchHHHHHHHhHhccCCcccc
Q 011622 361 LVEYLRSLQEN-NDELDVRLMLVSADTQCAPSLQQP-----------------YLCCQPSLSVKQLCEYVSLQTPLQAEE 422 (481)
Q Consensus 361 ~~~~l~~~~~~-~~e~~~~l~l~~~d~~~~p~l~~p-----------------~l~c~p~~~~~~l~~~va~q~~~~~~e 422 (481)
|+|+|..-.-. -+---|.++|+|.+....|.+..- =|..---|-|+-++.||+.-+- ...+
T Consensus 198 l~d~ll~n~~p~ke~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~-~~~~ 276 (331)
T PF11816_consen 198 LADCLLHNRIPPKEPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLE-KTPE 276 (331)
T ss_pred HHHHhhcCCCCCCCCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhc-cCcc
Confidence 56777632211 122458999999997777777666 5899999999999999998772 1000
Q ss_pred eEEEEEecccccCCCCCCCCCChhhh------hhcccccccccccccccCCCCcchhhhhhhh
Q 011622 423 VEILMVKERLDAKGNQSTPIPTTDQL------QILEGQETLAGLRVNHTSNTDHLILAYRQKQ 479 (481)
Q Consensus 423 ~e~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~l~~l~~~~~~~~~~l~~~y~~k~ 479 (481)
. ....+... .....+-| |+|--.-||+-+++-+|-+.|+|+|-||.|.
T Consensus 277 ~--------~~~~~~~~-~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k~ 330 (331)
T PF11816_consen 277 S--------KTPEMKPK-KLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRKG 330 (331)
T ss_pred c--------cCcccccc-CCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEecC
Confidence 0 00000000 00112223 3455667999999999999999999999874
No 80
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=92.32 E-value=0.042 Score=61.47 Aligned_cols=67 Identities=31% Similarity=0.761 Sum_probs=49.8
Q ss_pred ccccCcccccccccccccceecccCCCcccHHHHhhhhh--cCCCCCCCccccccCCCCCCCChhhhHHHH
Q 011622 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR--LGNNECPACRTHCASRRSLRDDPNYDALIS 169 (481)
Q Consensus 101 ~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~--~~~~~CP~CR~~~~~~~~l~~n~~L~~li~ 169 (481)
..+...+.|+||...+..|+. +.|.|.||..|+...|. .+...||+|+..+.. +..+..+....++.
T Consensus 16 ~~~~k~lEc~ic~~~~~~p~~-~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK-~s~~Es~r~sq~vq 84 (684)
T KOG4362|consen 16 NAMQKILECPICLEHVKEPSL-LKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK-RSLRESPRFSQLSK 84 (684)
T ss_pred HHHhhhccCCceeEEeeccch-hhhhHHHHhhhhhceeeccCccccchhhhhhhhh-hhccccchHHHHHH
Confidence 345668899999999999975 99999999999987665 235689999987765 33444444444443
No 81
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.95 E-value=0.092 Score=54.20 Aligned_cols=47 Identities=28% Similarity=0.723 Sum_probs=36.8
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhhhhh-cCCCCCCCcccc
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR-LGNNECPACRTH 151 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~-~~~~~CP~CR~~ 151 (481)
++...|-||-.-+.-... +||+|..|..|..+.-. .....||.||+.
T Consensus 59 Een~~C~ICA~~~TYs~~-~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYSAR-YPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEEEe-ccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 346689999998776654 99999999999876433 245789999984
No 82
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=0.087 Score=59.88 Aligned_cols=41 Identities=22% Similarity=0.660 Sum_probs=36.1
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccc
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 150 (481)
.-.|.+|...+.-|+.-..|||.|+..|+. .+...||.|+.
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 358999999999997779999999999998 26688999987
No 83
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.59 E-value=0.088 Score=54.18 Aligned_cols=47 Identities=28% Similarity=0.633 Sum_probs=34.5
Q ss_pred cccccccccccc---eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 108 QCPICLGIIKKT---RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 108 ~CpICl~~l~~P---v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.||+|++.+... .+-.+||-..|..|....-..-+..||.||..+..
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 499999876522 22256888889999776555445799999997765
No 84
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=0.085 Score=53.75 Aligned_cols=46 Identities=26% Similarity=0.558 Sum_probs=32.3
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.-+|.-|--.+..--..++|.|.||..|...- ..+.||.|-..+..
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSD---SDKICPLCDDRVQR 135 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcC---ccccCcCcccHHHH
Confidence 34677787654433334899999999997543 24789999876643
No 85
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=0.14 Score=53.95 Aligned_cols=47 Identities=23% Similarity=0.624 Sum_probs=34.9
Q ss_pred cCcccccccccccccc--eecccCCCcccHHHHhhhhhc----C---CCCCCCccc
Q 011622 104 RKDVQCPICLGIIKKT--RTVMECLHRFCRECIDKSMRL----G---NNECPACRT 150 (481)
Q Consensus 104 ~~~l~CpICl~~l~~P--v~i~~CgH~FC~~CI~~~l~~----~---~~~CP~CR~ 150 (481)
...+.|.||++...-. +..+||+|.||..|+..++.. + .-.||.|.-
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3467899999977643 334899999999999999862 2 236877655
No 86
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=91.04 E-value=0.095 Score=44.54 Aligned_cols=32 Identities=22% Similarity=0.516 Sum_probs=25.6
Q ss_pred cCccccccccccccc-ceecccCCCcccHHHHh
Q 011622 104 RKDVQCPICLGIIKK-TRTVMECLHRFCRECID 135 (481)
Q Consensus 104 ~~~l~CpICl~~l~~-Pv~i~~CgH~FC~~CI~ 135 (481)
...-.|++|...+.. +..+.||||.|+..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 345679999998775 45558999999999975
No 87
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=0.13 Score=56.81 Aligned_cols=40 Identities=25% Similarity=0.697 Sum_probs=33.1
Q ss_pred ccCcccccccccccc----cceecccCCCcccHHHHhhhhhcCCCCCC
Q 011622 103 IRKDVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMRLGNNECP 146 (481)
Q Consensus 103 l~~~l~CpICl~~l~----~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP 146 (481)
+..-+.|+||+..|. .|+. +-|||+.|..|+....+ .+||
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvs-l~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVS-LQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCccc-ccccchHHHHHHHhHhh---ccCC
Confidence 455689999988776 5887 88999999999998776 5677
No 88
>PHA03096 p28-like protein; Provisional
Probab=90.24 E-value=0.11 Score=53.06 Aligned_cols=44 Identities=34% Similarity=0.418 Sum_probs=30.4
Q ss_pred ccccccccccc-cce------ecccCCCcccHHHHhhhhhcC--CCCCCCccc
Q 011622 107 VQCPICLGIIK-KTR------TVMECLHRFCRECIDKSMRLG--NNECPACRT 150 (481)
Q Consensus 107 l~CpICl~~l~-~Pv------~i~~CgH~FC~~CI~~~l~~~--~~~CP~CR~ 150 (481)
-.|.||++... .++ .+..|.|.||..||..|.... ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 36999998554 221 125799999999999998732 235555554
No 89
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.14 E-value=0.062 Score=63.40 Aligned_cols=50 Identities=24% Similarity=0.657 Sum_probs=41.8
Q ss_pred ccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCcccccc
Q 011622 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (481)
Q Consensus 103 l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 153 (481)
+.....|+||++++.+--.++.|||.||..|+..|+. ....||.|...+-
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICKSIKG 1199 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchhhhhh
Confidence 4456799999999996655689999999999999999 5588999986443
No 90
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=89.49 E-value=0.33 Score=35.49 Aligned_cols=40 Identities=30% Similarity=0.810 Sum_probs=24.7
Q ss_pred ccccccccccceecc--cCCCcccHHHHhhhhhcCCC-CCCCc
Q 011622 109 CPICLGIIKKTRTVM--ECLHRFCRECIDKSMRLGNN-ECPAC 148 (481)
Q Consensus 109 CpICl~~l~~Pv~i~--~CgH~FC~~CI~~~l~~~~~-~CP~C 148 (481)
|.+|.++...-+... .|+-.++..|+..+|..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778999888777654 59989999999999984433 69988
No 91
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=89.21 E-value=0.59 Score=41.22 Aligned_cols=84 Identities=15% Similarity=0.271 Sum_probs=66.9
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccc-eEEEEEecccccCCCCCCCCCChhhhhhccccc
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEE-VEILMVKERLDAKGNQSTPIPTTDQLQILEGQE 455 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (481)
|.|++-......+|.|.+.-.-=..+++|.++..+|-.++.+.+++ |=+||- . .+ |+ -..
T Consensus 25 iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn--~---~~------p~--------~~~ 85 (112)
T cd01611 25 IPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVN--N---SL------PP--------TSA 85 (112)
T ss_pred eEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEEC--C---cc------CC--------chh
Confidence 7777777778999999998777889999999999999999988777 555551 1 11 22 247
Q ss_pred ccccccccccCCCCcchhhhhhhh
Q 011622 456 TLAGLRVNHTSNTDHLILAYRQKQ 479 (481)
Q Consensus 456 ~l~~l~~~~~~~~~~l~~~y~~k~ 479 (481)
||++|+..|-+..|.|+|.|..-.
T Consensus 86 ~~~~lY~~~kd~DGfLyl~Ys~~~ 109 (112)
T cd01611 86 TMSQLYEEHKDEDGFLYMTYSSEE 109 (112)
T ss_pred HHHHHHHHhCCCCCEEEEEEeccc
Confidence 899999999988999999998643
No 92
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.47 E-value=0.29 Score=51.56 Aligned_cols=48 Identities=17% Similarity=0.454 Sum_probs=38.2
Q ss_pred ccCcccccccccccc---cceecccCCCcccHHHHhhhhhcCC--CCCCCcccc
Q 011622 103 IRKDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGN--NECPACRTH 151 (481)
Q Consensus 103 l~~~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l~~~~--~~CP~CR~~ 151 (481)
+...+.|||=.+.-. .|+. +.|||..|..-|.+..+.+. +.||.|-..
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~-L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMM-LICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ccceeecccchhhccCCCCCee-eeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 466789998666443 3565 99999999999999998776 789999653
No 93
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.05 E-value=1.2 Score=43.40 Aligned_cols=40 Identities=28% Similarity=0.610 Sum_probs=31.2
Q ss_pred ccccccccccceecccCCC-cccHHHHhhhhhcCCCCCCCccccccC
Q 011622 109 CPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 109 CpICl~~l~~Pv~i~~CgH-~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
|-+|...-.. |.++||.| .+|..|-.. ...||.|+.+...
T Consensus 161 Cr~C~~~~~~-VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREAT-VLLLPCRHLCLCGICDES-----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCce-EEeecccceEeccccccc-----CccCCCCcChhhc
Confidence 9999887666 55699998 789999543 3669999987654
No 94
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=87.63 E-value=1.2 Score=37.59 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=59.4
Q ss_pred EEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccc-eEEEEEecccccCCCCCCCCCChhhhhhccccccc
Q 011622 379 LMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEE-VEILMVKERLDAKGNQSTPIPTTDQLQILEGQETL 457 (481)
Q Consensus 379 l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 457 (481)
+.|.|.- .+|.|.+.-.-=..+++|.++..||-.++.+.+++ |=+||- +.+. |+ .++||
T Consensus 4 i~~~~~g--~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvn---n~f~-------p~--------~d~~~ 63 (87)
T cd01612 4 IRFKPIG--SAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYIN---NSFA-------PS--------PDENV 63 (87)
T ss_pred EEEEECC--CCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEEC---CccC-------CC--------chhHH
Confidence 4444443 47888888777889999999999999999998776 666761 1111 22 24589
Q ss_pred ccccccccCCCCcchhhhhhh
Q 011622 458 AGLRVNHTSNTDHLILAYRQK 478 (481)
Q Consensus 458 ~~l~~~~~~~~~~l~~~y~~k 478 (481)
++|+..| .-.|.|||.|..-
T Consensus 64 g~LY~~~-~~dGfLyi~Ys~~ 83 (87)
T cd01612 64 GNLYRCF-GTNGELIVSYCKT 83 (87)
T ss_pred HHHHHhc-CCCCEEEEEEeCc
Confidence 9999999 6899999999753
No 95
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.19 E-value=0.61 Score=45.73 Aligned_cols=47 Identities=21% Similarity=0.625 Sum_probs=36.2
Q ss_pred cccccccccccc--cceecccCCCcccHHHHhhhhhc-------CCCCCCCcccccc
Q 011622 106 DVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRL-------GNNECPACRTHCA 153 (481)
Q Consensus 106 ~l~CpICl~~l~--~Pv~i~~CgH~FC~~CI~~~l~~-------~~~~CP~CR~~~~ 153 (481)
.-.|.+|...+. +.+. +-|.|.|+..|+..|... ..-.||.|...|-
T Consensus 50 ~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 346999998887 4455 889999999999999752 1237999988654
No 96
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=86.01 E-value=0.91 Score=39.57 Aligned_cols=83 Identities=13% Similarity=0.237 Sum_probs=58.6
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEEEecccccCCCCCCCCCChhhhhhcccccc
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 456 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (481)
|+|++-......+|.|.+.-.--..++||.++...|-..+.+.+++- ||+--+. . .+....|
T Consensus 17 IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~a-lfl~Vn~---~--------------lp~~s~t 78 (104)
T PF02991_consen 17 IPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQA-LFLFVNN---T--------------LPSTSST 78 (104)
T ss_dssp EEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS--EEEEBTT---B--------------ESSTTSB
T ss_pred cEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCce-EEEEEcC---c--------------ccchhhH
Confidence 78888888888899999986557899999999999999998887652 3332211 1 1124579
Q ss_pred cccccccccCCCCcchhhhhh
Q 011622 457 LAGLRVNHTSNTDHLILAYRQ 477 (481)
Q Consensus 457 l~~l~~~~~~~~~~l~~~y~~ 477 (481)
|++|+..+-+-.|-|+|.|.-
T Consensus 79 m~elY~~~kdeDGFLY~~Ys~ 99 (104)
T PF02991_consen 79 MGELYEKYKDEDGFLYMTYSS 99 (104)
T ss_dssp HHHHHHHHB-TTSSEEEEEES
T ss_pred HHHHHHHhCCCCCeEEEEecc
Confidence 999999999999999999964
No 97
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.76 E-value=0.3 Score=49.32 Aligned_cols=34 Identities=26% Similarity=0.771 Sum_probs=29.9
Q ss_pred CcccccccccccccceecccC----CCcccHHHHhhhhh
Q 011622 105 KDVQCPICLGIIKKTRTVMEC----LHRFCRECIDKSMR 139 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~C----gH~FC~~CI~~~l~ 139 (481)
..|.|.+|.+.|.+..+ ..| .|.||+.|-...++
T Consensus 267 apLcCTLC~ERLEDTHF-VQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHF-VQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CceeehhhhhhhccCce-eecCCCcccceecccCHHHHH
Confidence 35899999999999987 666 59999999999987
No 98
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=84.52 E-value=0.79 Score=42.72 Aligned_cols=32 Identities=28% Similarity=0.692 Sum_probs=22.4
Q ss_pred cccccccccccccceecccC------------CCcc-cHHHHhhhh
Q 011622 106 DVQCPICLGIIKKTRTVMEC------------LHRF-CRECIDKSM 138 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~C------------gH~F-C~~CI~~~l 138 (481)
+..||||++...+.|. +-| +-.| ...|+.++-
T Consensus 2 d~~CpICme~PHNAVL-LlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVL-LLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCceEE-EEeccccCCccccccCCccchhHHHHHHH
Confidence 5689999999999985 433 3222 467777765
No 99
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.64 E-value=0.67 Score=46.08 Aligned_cols=37 Identities=19% Similarity=0.090 Sum_probs=31.6
Q ss_pred cccCcccccccccccccceecccCCCcccHHHHhhhhh
Q 011622 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR 139 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~ 139 (481)
.+..--.|.+|+..+.+||. ++=||.||+.||..++-
T Consensus 39 siK~FdcCsLtLqPc~dPvi-t~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVI-TPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCcc-CCCCeeeeHHHHHHHHH
Confidence 34445589999999999995 99999999999998775
No 100
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=82.35 E-value=0.46 Score=43.13 Aligned_cols=34 Identities=26% Similarity=0.556 Sum_probs=27.5
Q ss_pred ccccccccccccc--ceecccCC------CcccHHHHhhhhh
Q 011622 106 DVQCPICLGIIKK--TRTVMECL------HRFCRECIDKSMR 139 (481)
Q Consensus 106 ~l~CpICl~~l~~--Pv~i~~Cg------H~FC~~CI~~~l~ 139 (481)
...|.||++.+.+ -|..++|| |.||..|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 6789999998877 55556676 6799999999953
No 101
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=81.49 E-value=1.4 Score=41.15 Aligned_cols=47 Identities=23% Similarity=0.429 Sum_probs=34.9
Q ss_pred cccccccccccccceecccCCC-----cccHHHHhhhhhc-CCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKTRTVMECLH-----RFCRECIDKSMRL-GNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH-----~FC~~CI~~~l~~-~~~~CP~CR~~~~~ 154 (481)
.-.|-||.+-.. +.. .||.. ..+..|+..|+.. +...|+.|.+++..
T Consensus 8 ~~~CRIC~~~~~-~~~-~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 8 DKCCWICKDEYD-VVT-NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCeeEecCCCCC-Ccc-CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 557999998754 222 56654 3399999999983 45689999998765
No 102
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=80.28 E-value=1.3 Score=37.33 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=53.0
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCc-ccceEEEEEecccccCCCCCCCCCChhhhhhccccc
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQ-AEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQE 455 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~-~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (481)
|.+.|.|.. .+|-|.+.-.-.-++-+|.++..||-.++.++ -+-|=+||- +.+..+ | ++
T Consensus 2 V~v~fk~iG--~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin---~sFaPs-----p----------De 61 (87)
T PF04110_consen 2 VTVRFKAIG--SAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYIN---NSFAPS-----P----------DE 61 (87)
T ss_dssp EEEEEEEET--T----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEE---EEE--------T----------TS
T ss_pred EEEEEEecC--CCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEc---CccCCC-----c----------hh
Confidence 455666666 49999999999999999999999999999986 456667761 123322 2 47
Q ss_pred ccccccccccCCCCcchhhhhhh
Q 011622 456 TLAGLRVNHTSNTDHLILAYRQK 478 (481)
Q Consensus 456 ~l~~l~~~~~~~~~~l~~~y~~k 478 (481)
|++.|+..|. .+|.|+|.|...
T Consensus 62 ~vg~L~~~f~-~~~~Liv~Ys~t 83 (87)
T PF04110_consen 62 TVGDLYRCFG-TNGELIVSYSKT 83 (87)
T ss_dssp BHHHHHHHH--BTTBEEEEEESS
T ss_pred HHHHHHHHhC-CCCEEEEEEecc
Confidence 8999998887 899999999754
No 103
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=80.22 E-value=1.2 Score=33.42 Aligned_cols=31 Identities=23% Similarity=0.790 Sum_probs=22.0
Q ss_pred ccCC-CcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 123 MECL-HRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 123 ~~Cg-H~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
+.|. |..|..|+..++. .+..||.|..+++.
T Consensus 16 i~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLS-RSDRCPICGKPLPT 47 (50)
T ss_dssp EE-SS-EEEHHHHHHT-S-SSSEETTTTEE---
T ss_pred eeecchhHHHHHHHHHhc-cccCCCcccCcCcc
Confidence 5677 8889999999998 66899999998764
No 104
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.21 E-value=0.9 Score=43.11 Aligned_cols=51 Identities=25% Similarity=0.468 Sum_probs=34.6
Q ss_pred cCccccccccccccc---ce-e--cccCCCcccHHHHhhhhhc-----C-----CCCCCCccccccC
Q 011622 104 RKDVQCPICLGIIKK---TR-T--VMECLHRFCRECIDKSMRL-----G-----NNECPACRTHCAS 154 (481)
Q Consensus 104 ~~~l~CpICl~~l~~---Pv-~--i~~CgH~FC~~CI~~~l~~-----~-----~~~CP~CR~~~~~ 154 (481)
.....|.||.-+--+ |- + -+.||..|+.-|+..|++. . -..||.|..+++.
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 334567777654322 11 1 1569999999999999972 0 1379999998865
No 105
>PHA02862 5L protein; Provisional
Probab=80.05 E-value=1.2 Score=41.06 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=35.2
Q ss_pred ccccccccccccceecccCCC-----cccHHHHhhhhhc-CCCCCCCccccccCC
Q 011622 107 VQCPICLGIIKKTRTVMECLH-----RFCRECIDKSMRL-GNNECPACRTHCASR 155 (481)
Q Consensus 107 l~CpICl~~l~~Pv~i~~CgH-----~FC~~CI~~~l~~-~~~~CP~CR~~~~~~ 155 (481)
..|-||.+.-...+ .||.. ..+..|+.+|++. +...||.|+.++..+
T Consensus 3 diCWIC~~~~~e~~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 3 DICWICNDVCDERN--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CEEEEecCcCCCCc--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 36999998765443 56654 4589999999983 456899999987653
No 106
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=79.49 E-value=1.8 Score=33.04 Aligned_cols=40 Identities=23% Similarity=0.575 Sum_probs=21.0
Q ss_pred ccccccccccc---------eecccCCCcccHHHHhhhhhcCCCCCCCcc
Q 011622 109 CPICLGIIKKT---------RTVMECLHRFCRECIDKSMRLGNNECPACR 149 (481)
Q Consensus 109 CpICl~~l~~P---------v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR 149 (481)
|--|+..|..+ +....|++.||..|= -++......||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD-~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD-VFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHH-HTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcC-hhhhccccCCcCCC
Confidence 44455555543 444679999999993 34444567899984
No 107
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=78.49 E-value=1.1 Score=51.26 Aligned_cols=50 Identities=32% Similarity=0.675 Sum_probs=37.6
Q ss_pred cCccccccccccccc--ce-ecccCCCcccHHHHhhhhhc------CCCCCCCcccccc
Q 011622 104 RKDVQCPICLGIIKK--TR-TVMECLHRFCRECIDKSMRL------GNNECPACRTHCA 153 (481)
Q Consensus 104 ~~~l~CpICl~~l~~--Pv-~i~~CgH~FC~~CI~~~l~~------~~~~CP~CR~~~~ 153 (481)
...+.|.||.+.+.. |+ .+..|-|+|+..||..|... ....||.|+....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 456899999998874 32 22458899999999999863 3468999995443
No 108
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=78.44 E-value=1.7 Score=35.89 Aligned_cols=49 Identities=29% Similarity=0.649 Sum_probs=22.6
Q ss_pred ccccccccccccc-----c-eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKK-----T-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~-----P-v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.-.|.||.+.+-- + |.+..|+-..|+.|..-=.+.++..||.|++.+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 4579999886542 2 33356888899999987777788999999987764
No 109
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=78.42 E-value=1.8 Score=52.20 Aligned_cols=50 Identities=24% Similarity=0.621 Sum_probs=34.6
Q ss_pred Cccccccccc-cc-ccceecccCCCcccHHHHhhhhhc---------CCCCCCCccccccC
Q 011622 105 KDVQCPICLG-II-KKTRTVMECLHRFCRECIDKSMRL---------GNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~-~l-~~Pv~i~~CgH~FC~~CI~~~l~~---------~~~~CP~CR~~~~~ 154 (481)
.+..|-||+. .+ ..|..-+.|+|.|+..|....+.. +--.||.|..++..
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 3557888875 22 345434899999999999876652 12379999887653
No 110
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=78.29 E-value=1.1 Score=45.40 Aligned_cols=44 Identities=27% Similarity=0.757 Sum_probs=35.1
Q ss_pred cccccccccccc---cceecccCCCcccHHHHhhhhhcCCCCCCCccc
Q 011622 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (481)
Q Consensus 106 ~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 150 (481)
...||||...+. ..+..++|||.....|+..+...+ -+||.|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 455999998665 223348999999999999988866 89999987
No 111
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.86 E-value=1.1 Score=51.61 Aligned_cols=38 Identities=24% Similarity=0.494 Sum_probs=30.8
Q ss_pred cccCccccccccc-ccccceecccCCCcccHHHHhhhhh
Q 011622 102 EIRKDVQCPICLG-IIKKTRTVMECLHRFCRECIDKSMR 139 (481)
Q Consensus 102 ~l~~~l~CpICl~-~l~~Pv~i~~CgH~FC~~CI~~~l~ 139 (481)
.++..-.|.+|.. ++..|..+.||||.|+..||.+...
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 3455678999997 4557888899999999999988764
No 112
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=76.61 E-value=1.5 Score=32.52 Aligned_cols=39 Identities=31% Similarity=0.757 Sum_probs=23.9
Q ss_pred cccccccccc--ceecccCCC-----cccHHHHhhhhh-cCCCCCCCc
Q 011622 109 CPICLGIIKK--TRTVMECLH-----RFCRECIDKSMR-LGNNECPAC 148 (481)
Q Consensus 109 CpICl~~l~~--Pv~i~~CgH-----~FC~~CI~~~l~-~~~~~CP~C 148 (481)
|-||++.-.. |. +.||.- ..+..|+..|+. .+...|++|
T Consensus 1 CrIC~~~~~~~~~l-i~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6678775442 34 367664 458999999998 345679887
No 113
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=75.32 E-value=1.6 Score=45.92 Aligned_cols=30 Identities=33% Similarity=0.844 Sum_probs=22.8
Q ss_pred CCCcccHHHHhhhhhc------------CCCCCCCccccccC
Q 011622 125 CLHRFCRECIDKSMRL------------GNNECPACRTHCAS 154 (481)
Q Consensus 125 CgH~FC~~CI~~~l~~------------~~~~CP~CR~~~~~ 154 (481)
|....|..|+-+|+.. +...||.||+.|-.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 4456699999999952 34589999998754
No 114
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=74.21 E-value=3.8 Score=36.19 Aligned_cols=45 Identities=24% Similarity=0.569 Sum_probs=29.5
Q ss_pred cccccccccccc----cceecccCCCcccHHHHhhhhhcCCCCCCCccc
Q 011622 106 DVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (481)
Q Consensus 106 ~l~CpICl~~l~----~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 150 (481)
.-.|.+|...|. ....+..|.|.+|..|-...-......|.+|..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 447999987542 345668899999999976522223457888876
No 115
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.92 E-value=1.7 Score=46.29 Aligned_cols=41 Identities=37% Similarity=0.669 Sum_probs=30.6
Q ss_pred cccccccccccc-----cceecccCCCcccHHHHhhhhhcCCCCCCCc
Q 011622 106 DVQCPICLGIIK-----KTRTVMECLHRFCRECIDKSMRLGNNECPAC 148 (481)
Q Consensus 106 ~l~CpICl~~l~-----~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~C 148 (481)
-..||+|.-.+. +-+++. |||-||+.|...|.. +...|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~-~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKT-HNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhh-CCccccCc
Confidence 457999988765 446656 999999999999887 44556443
No 116
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.11 E-value=2.8 Score=41.89 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=40.2
Q ss_pred cCcccccccccccccc---eecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCCh
Q 011622 104 RKDVQCPICLGIIKKT---RTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162 (481)
Q Consensus 104 ~~~l~CpICl~~l~~P---v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~ 162 (481)
...+.|||-.-.|..- +.+.+|||.|-..-+...- ...|++|...+.....+..|.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIvlNg 167 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIVLNG 167 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEeeCC
Confidence 3468899976655532 3357899999998877653 478999999988755444444
No 117
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.80 E-value=1.7 Score=46.18 Aligned_cols=34 Identities=29% Similarity=0.837 Sum_probs=24.9
Q ss_pred ccccccccc-ccccc--eecccCCCcccHHHHhhhhh
Q 011622 106 DVQCPICLG-IIKKT--RTVMECLHRFCRECIDKSMR 139 (481)
Q Consensus 106 ~l~CpICl~-~l~~P--v~i~~CgH~FC~~CI~~~l~ 139 (481)
...|.||.. ..... ..+..|+|.||..|+..++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 568999993 33321 11367999999999999887
No 118
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=72.55 E-value=2.5 Score=48.14 Aligned_cols=48 Identities=10% Similarity=0.269 Sum_probs=31.8
Q ss_pred cccccccccccccc---eeccc---CCCcccHHHHhhhhhc-----CCCCCCCcccccc
Q 011622 106 DVQCPICLGIIKKT---RTVME---CLHRFCRECIDKSMRL-----GNNECPACRTHCA 153 (481)
Q Consensus 106 ~l~CpICl~~l~~P---v~i~~---CgH~FC~~CI~~~l~~-----~~~~CP~CR~~~~ 153 (481)
...|++|..-+.+| .-+.+ |+|.||..||..|... ....|++|..-|-
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 34566666555543 22233 9999999999999862 2346788876553
No 119
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=71.81 E-value=2.5 Score=47.87 Aligned_cols=65 Identities=17% Similarity=0.389 Sum_probs=45.9
Q ss_pred ccCcccccccccccccceecccCCCcccHHHHhhhhh----cCCCCCCCccccccCCCCCCCChhhhHHHH
Q 011622 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----LGNNECPACRTHCASRRSLRDDPNYDALIS 169 (481)
Q Consensus 103 l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~----~~~~~CP~CR~~~~~~~~l~~n~~L~~li~ 169 (481)
+.-.|.|||+...+.-|.....|.|.-|..-.. ++. .....||+|.+.+.. ..+..+..+.+++.
T Consensus 303 ~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~~~pTW~CPVC~~~~~~-e~l~iD~~~~~iL~ 371 (636)
T KOG2169|consen 303 LRVSLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNEQKPTWRCPVCQKAAPF-EGLIIDGYFLNILQ 371 (636)
T ss_pred ceeEecCCcccceeecCCcccccccceecchhh-hHHhccCCCeeeCccCCccccc-cchhhhHHHHHHHh
Confidence 456889999999988887778899988876542 222 234689999987765 45666665555553
No 120
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.17 E-value=2.5 Score=43.08 Aligned_cols=30 Identities=30% Similarity=0.872 Sum_probs=23.8
Q ss_pred CCCcccHHHHhhhhhc------------CCCCCCCccccccC
Q 011622 125 CLHRFCRECIDKSMRL------------GNNECPACRTHCAS 154 (481)
Q Consensus 125 CgH~FC~~CI~~~l~~------------~~~~CP~CR~~~~~ 154 (481)
|....|..|+.+|+.. ++..||.||+.+-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 5566799999999852 45689999998765
No 121
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=68.09 E-value=3 Score=47.35 Aligned_cols=46 Identities=30% Similarity=0.710 Sum_probs=33.1
Q ss_pred cccccccccccc-cceecccCCCcccHHHHhhhhhcCCCCCCC-ccccc
Q 011622 106 DVQCPICLGIIK-KTRTVMECLHRFCRECIDKSMRLGNNECPA-CRTHC 152 (481)
Q Consensus 106 ~l~CpICl~~l~-~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~-CR~~~ 152 (481)
-+.|.||.-.+. ...++..|+|..+..|...||..+ -.||. |...|
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~g-d~CpsGCGC~C 1075 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTG-DVCPSGCGCHC 1075 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcC-CcCCCCCCcCc
Confidence 456777765444 334457899999999999999954 58987 55444
No 122
>PLN02189 cellulose synthase
Probab=66.90 E-value=3.7 Score=48.51 Aligned_cols=49 Identities=31% Similarity=0.637 Sum_probs=37.4
Q ss_pred ccccccccccccc-----c-eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKK-----T-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~-----P-v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
...|.||.+.+-- | |.+-.|+-..|..|..-=.+.++..||.|++.+..
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 3489999997541 2 44456888899999965556788999999998764
No 123
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.54 E-value=3.5 Score=33.60 Aligned_cols=33 Identities=24% Similarity=0.711 Sum_probs=24.9
Q ss_pred CCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCC
Q 011622 125 CLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDD 161 (481)
Q Consensus 125 CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n 161 (481)
--|+||..|....+. ..||.|...+.. +.+++.
T Consensus 27 fEcTFCadCae~~l~---g~CPnCGGelv~-RP~RPa 59 (84)
T COG3813 27 FECTFCADCAENRLH---GLCPNCGGELVA-RPIRPA 59 (84)
T ss_pred EeeehhHhHHHHhhc---CcCCCCCchhhc-CcCChH
Confidence 347999999988776 789999988775 334443
No 124
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.49 E-value=2.9 Score=45.24 Aligned_cols=36 Identities=31% Similarity=0.640 Sum_probs=29.8
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhhhhh
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR 139 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~ 139 (481)
.....|.||...+......+.|||.||..|+..++.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 446789999998876333489999999999999886
No 125
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=64.23 E-value=1.4 Score=35.69 Aligned_cols=42 Identities=21% Similarity=0.528 Sum_probs=23.5
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
++.||.|...|.- .. +|.+|..|-..+.. ...||.|..++..
T Consensus 1 e~~CP~C~~~L~~----~~-~~~~C~~C~~~~~~--~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELEW----QG-GHYHCEACQKDYKK--EAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEEE----ET-TEEEETTT--EEEE--EEE-TTT-SB-EE
T ss_pred CCcCCCCCCccEE----eC-CEEECcccccccee--cccCCCcccHHHH
Confidence 3579999987542 11 78889999876654 3679999887754
No 126
>PLN02436 cellulose synthase A
Probab=63.99 E-value=4.5 Score=47.93 Aligned_cols=49 Identities=33% Similarity=0.712 Sum_probs=37.2
Q ss_pred ccccccccccccc-----c-eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKK-----T-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~-----P-v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
...|.||.+.+-. | |.+-.|+-..|..|..-=.+.++..||.|++.+..
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 3479999997532 2 44456888899999965556788999999998764
No 127
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=62.55 E-value=7.4 Score=30.25 Aligned_cols=44 Identities=20% Similarity=0.613 Sum_probs=30.3
Q ss_pred cccccccccccce-ecccCC--CcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 108 QCPICLGIIKKTR-TVMECL--HRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 108 ~CpICl~~l~~Pv-~i~~Cg--H~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.|-.|-..+.... ...-|. .+||..|....+. ..||.|...+..
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCcccc
Confidence 5667766554211 113355 4899999999885 789999987765
No 128
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=61.11 E-value=5.6 Score=47.24 Aligned_cols=49 Identities=29% Similarity=0.653 Sum_probs=37.3
Q ss_pred ccccccccccccc-----c-eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKK-----T-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~-----P-v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.-.|.||.+.+-- | |.+-.|+-..|+.|..-=.+.++..||.|++.+..
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 3479999987542 2 55567888899999955445688999999998763
No 129
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=58.87 E-value=4.6 Score=39.46 Aligned_cols=47 Identities=19% Similarity=0.517 Sum_probs=39.1
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCcccccc
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 153 (481)
...|.+|..+...-+.+-.|+-.|...|+..++.. ...||.|.--.+
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~ 227 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWT 227 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccC
Confidence 45899999999888777788888999999999984 688999965443
No 130
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=56.93 E-value=8.6 Score=39.72 Aligned_cols=48 Identities=21% Similarity=0.472 Sum_probs=36.3
Q ss_pred cccCcccccccccccc---cceecccCCCcccHHHHhhhhhcC--CCCCCCccc
Q 011622 102 EIRKDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLG--NNECPACRT 150 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l~~~--~~~CP~CR~ 150 (481)
.+...+.||+=.+.-. .|++ +.|||..-..-+....+.| .+.||.|-.
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~m-l~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVM-LECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCee-eeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 4567789998666443 4565 9999999999888877644 368999955
No 131
>PLN02400 cellulose synthase
Probab=56.84 E-value=6.5 Score=46.77 Aligned_cols=49 Identities=27% Similarity=0.607 Sum_probs=37.1
Q ss_pred ccccccccccccc-----c-eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKK-----T-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~-----P-v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.-.|.||.+.+-- | |.+-.|+-..|+.|..-=.+.++..||.|++.+..
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 3489999987542 2 45567888899999854445688899999998764
No 132
>PLN02195 cellulose synthase A
Probab=54.39 E-value=8.8 Score=45.24 Aligned_cols=47 Identities=19% Similarity=0.552 Sum_probs=35.9
Q ss_pred ccccccccccc-----cc-eecccCCCcccHHHHhhhhhcCCCCCCCcccccc
Q 011622 107 VQCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (481)
Q Consensus 107 l~CpICl~~l~-----~P-v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 153 (481)
-.|.||.+.+- +| |.+-.|+-..|+.|..-=-+.++..||.|++.+.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 37999998554 22 4556799999999995444568899999999775
No 133
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.99 E-value=12 Score=33.14 Aligned_cols=42 Identities=26% Similarity=0.505 Sum_probs=30.3
Q ss_pred ccccccccccccc-------------eecccCCCcccHHHHhhhhhcCCCCCCCcc
Q 011622 107 VQCPICLGIIKKT-------------RTVMECLHRFCRECIDKSMRLGNNECPACR 149 (481)
Q Consensus 107 l~CpICl~~l~~P-------------v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR 149 (481)
..|--|+..|..+ .....|.+.||.+|=.-+-. ....||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe-~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHE-SLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhh-hccCCcCCC
Confidence 4599999877654 23577999999999544333 557799985
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=53.77 E-value=9.3 Score=39.68 Aligned_cols=48 Identities=27% Similarity=0.647 Sum_probs=36.1
Q ss_pred cccccccccccc---cceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.-.||||...+. .+..-.+|++..|..|+..... +...||.||++...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCcccc
Confidence 457999999763 2222246888899999988877 67899999976654
No 135
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.74 E-value=21 Score=32.61 Aligned_cols=38 Identities=26% Similarity=0.551 Sum_probs=24.4
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
++.+|-||+..-. .--||| -|..|-. ..|..|...++.
T Consensus 64 ddatC~IC~KTKF----ADG~GH-~C~YCq~-------r~CARCGGrv~l 101 (169)
T KOG3799|consen 64 DDATCGICHKTKF----ADGCGH-NCSYCQT-------RFCARCGGRVSL 101 (169)
T ss_pred cCcchhhhhhccc----ccccCc-ccchhhh-------hHHHhcCCeeee
Confidence 3568999987533 245888 5777743 446667665554
No 136
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=50.84 E-value=10 Score=44.94 Aligned_cols=49 Identities=22% Similarity=0.542 Sum_probs=37.2
Q ss_pred ccccccccccccc-----c-eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKK-----T-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~-----P-v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
...|.||.+.+-- | |.+-.|+-..|+.|..-=.+.++..||.|++.+..
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 4479999987542 2 45567888899999965555688999999998763
No 137
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=50.82 E-value=8.3 Score=25.24 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=9.9
Q ss_pred cccccccccccc-eecccCCCcc
Q 011622 108 QCPICLGIIKKT-RTVMECLHRF 129 (481)
Q Consensus 108 ~CpICl~~l~~P-v~i~~CgH~F 129 (481)
.||-|...+... .....|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 366666544322 2223355554
No 138
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=50.54 E-value=4.6 Score=41.05 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=21.9
Q ss_pred cccccccccccccceeccc----CCCcccHHHHhhhhhcCCCCCCCcccc
Q 011622 106 DVQCPICLGIIKKTRTVME----CLHRFCRECIDKSMRLGNNECPACRTH 151 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~----CgH~FC~~CI~~~l~~~~~~CP~CR~~ 151 (481)
.-.||||.....-.+..-. --|.+|..|-..|-- ....||.|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-VRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-cCCCCcCCCCC
Confidence 4689999987664443121 246789999999976 34689999763
No 139
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=50.37 E-value=23 Score=31.30 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=60.6
Q ss_pred ccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCccc-ceEEEEEecccccCCCCCCCCCChhhhhhc
Q 011622 373 DELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAE-EVEILMVKERLDAKGNQSTPIPTTDQLQIL 451 (481)
Q Consensus 373 ~e~~~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~-e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l 451 (481)
.+.+|+|.- .-.+|-|.+--..=-||-+|.-+--|+-.++.+++- -|=+||- +++. |+.
T Consensus 29 ~kV~i~l~a----iG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN---~sFA-------PsP------ 88 (116)
T KOG3439|consen 29 RKVQIRLRA----IGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVN---NSFA-------PSP------ 88 (116)
T ss_pred ceEEEEEec----cCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEc---CccC-------CCc------
Confidence 466666643 357899988888888999999999999999999964 4555652 1233 222
Q ss_pred ccccccccccccccCCCCcchhhhhh
Q 011622 452 EGQETLAGLRVNHTSNTDHLILAYRQ 477 (481)
Q Consensus 452 ~~~~~l~~l~~~~~~~~~~l~~~y~~ 477 (481)
+++++.|+..|. ..|+|+|.|-.
T Consensus 89 --Dq~v~~Ly~cf~-~d~~Lvl~Yc~ 111 (116)
T KOG3439|consen 89 --DQIVGNLYECFG-TDGKLVLNYCI 111 (116)
T ss_pred --hhHHHHHHHhcC-CCCEEEEEEee
Confidence 356788887765 78999999964
No 140
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.65 E-value=13 Score=37.55 Aligned_cols=50 Identities=24% Similarity=0.508 Sum_probs=33.2
Q ss_pred Ccccccccccccccce---ecccCC-----CcccHHHHhhhhhcC---C----CCCCCccccccC
Q 011622 105 KDVQCPICLGIIKKTR---TVMECL-----HRFCRECIDKSMRLG---N----NECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv---~i~~Cg-----H~FC~~CI~~~l~~~---~----~~CP~CR~~~~~ 154 (481)
.+-.|-||+..=.+-. -+-||. |-.+..|+..|+... + -.||.|++....
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 3568999998654321 113443 456899999999732 1 279999997653
No 141
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=48.50 E-value=8 Score=44.03 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=37.9
Q ss_pred cCcccccccccccccc---------eecccCCCcc--------------------cHHHHhhhhhc-------CCCCCCC
Q 011622 104 RKDVQCPICLGIIKKT---------RTVMECLHRF--------------------CRECIDKSMRL-------GNNECPA 147 (481)
Q Consensus 104 ~~~l~CpICl~~l~~P---------v~i~~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~ 147 (481)
.+--.|+-|+.-+.+| +.++.||..| |..|...+-.. ....||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 3456899999887766 3458899888 99999887652 2357999
Q ss_pred ccccccC
Q 011622 148 CRTHCAS 154 (481)
Q Consensus 148 CR~~~~~ 154 (481)
|.-.+.-
T Consensus 179 CGP~~~l 185 (750)
T COG0068 179 CGPHLFL 185 (750)
T ss_pred cCCCeEE
Confidence 9876554
No 142
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=47.78 E-value=8.7 Score=30.82 Aligned_cols=12 Identities=50% Similarity=1.173 Sum_probs=9.1
Q ss_pred cccHHHHhhhhh
Q 011622 128 RFCRECIDKSMR 139 (481)
Q Consensus 128 ~FC~~CI~~~l~ 139 (481)
-||+.|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999997
No 143
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.55 E-value=6.2 Score=40.49 Aligned_cols=50 Identities=28% Similarity=0.782 Sum_probs=41.7
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.....|-||...+.-|...-.|+|-||..|...|... .+.||.|+..+..
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~-~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAM-GNDCPDCRGKISP 152 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhh-hhccchhhcCcCc
Confidence 4567899999999988876779999999999999884 4789999886653
No 144
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=47.50 E-value=13 Score=38.73 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=36.8
Q ss_pred CCCCCCCCCCcccccCcchHHHHHHHhHhccC--CcccceEEEEE
Q 011622 386 TQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTP--LQAEEVEILMV 428 (481)
Q Consensus 386 ~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~--~~~~e~e~~~~ 428 (481)
..+.+.|+++||=|---.+|-||-.|++.|+. ...-+|+|+..
T Consensus 157 ~~~~k~l~~~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~ 201 (331)
T KOG2660|consen 157 KDTLKDLVRRFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCE 201 (331)
T ss_pred cccccccccceEeccHHHHHHHHHHHHHHHhccccchhhheeecC
Confidence 34678889999999999999999999999998 45778888765
No 145
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=46.86 E-value=11 Score=39.02 Aligned_cols=42 Identities=24% Similarity=0.596 Sum_probs=25.0
Q ss_pred ccccccccccc-c-ceecccCCCcccHHHHhhhhhcCCCCCCCcc
Q 011622 107 VQCPICLGIIK-K-TRTVMECLHRFCRECIDKSMRLGNNECPACR 149 (481)
Q Consensus 107 l~CpICl~~l~-~-Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR 149 (481)
..|-.|.+-+. . .+.+-.|.+.||.+|= .++...-..||-|.
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCD-v~iHesLh~CpgCe 374 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCD-VFIHESLHNCPGCE 374 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccch-HHHHhhhhcCCCcC
Confidence 34777754333 2 2445668888888883 23333445788885
No 146
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=46.79 E-value=11 Score=28.55 Aligned_cols=38 Identities=24% Similarity=0.594 Sum_probs=23.6
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhh-cCCCCCCCcccc
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR-LGNNECPACRTH 151 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~-~~~~~CP~CR~~ 151 (481)
.+.||.|...|.... ++.-|...... .....||+|...
T Consensus 2 ~f~CP~C~~~~~~~~--------L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS--------LVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHHH--------HHHHHHhHCcCCCCCccCCCchhh
Confidence 578999999544322 34445554443 234689999863
No 147
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=45.30 E-value=10 Score=28.51 Aligned_cols=33 Identities=18% Similarity=0.481 Sum_probs=23.5
Q ss_pred ccccccccccc---cceecccCCCcccHHHHhhhhh
Q 011622 107 VQCPICLGIIK---KTRTVMECLHRFCRECIDKSMR 139 (481)
Q Consensus 107 l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l~ 139 (481)
..|.+|...|. .......||+.||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 35888866443 3344578999999999876654
No 148
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.72 E-value=3.9 Score=41.38 Aligned_cols=45 Identities=29% Similarity=0.633 Sum_probs=35.3
Q ss_pred cccccccccccc------cceeccc--------CCCcccHHHHhhhhhcCCCCCCCcccc
Q 011622 106 DVQCPICLGIIK------KTRTVME--------CLHRFCRECIDKSMRLGNNECPACRTH 151 (481)
Q Consensus 106 ~l~CpICl~~l~------~Pv~i~~--------CgH~FC~~CI~~~l~~~~~~CP~CR~~ 151 (481)
...|.||...+. .|.. +. |||+.|..|+...+......||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~v-l~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLV-LSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhH-HHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 346999988776 3554 55 999999999999887554789999874
No 150
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=44.54 E-value=11 Score=38.04 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=36.2
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhhc-CCCCCCC
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPA 147 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~-~~~~CP~ 147 (481)
-.+.|||-...+.+|+....|||.|=+.-|..++.. ..-.||+
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccc
Confidence 367999999999999877899999999999998873 2356887
No 151
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=43.63 E-value=13 Score=36.97 Aligned_cols=43 Identities=23% Similarity=0.381 Sum_probs=35.0
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhhc-CCCCCCC
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPA 147 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~-~~~~CP~ 147 (481)
-++.|||-+..+..|+....|.|.|=..-|...+.. ....||.
T Consensus 188 ~~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 188 LSNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred hcccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecch
Confidence 468999999999989866899999999999998872 2345664
No 152
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=42.43 E-value=12 Score=43.18 Aligned_cols=50 Identities=22% Similarity=0.509 Sum_probs=38.1
Q ss_pred Ccccccccccccccc---------eecccCCCcc--------------------cHHHHhhhhhc-------CCCCCCCc
Q 011622 105 KDVQCPICLGIIKKT---------RTVMECLHRF--------------------CRECIDKSMRL-------GNNECPAC 148 (481)
Q Consensus 105 ~~l~CpICl~~l~~P---------v~i~~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~C 148 (481)
+.-.|+-|+.-+.+| +.|+.||..| |..|...+... ....||.|
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~C 146 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRC 146 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCCC
Confidence 456899999988776 3567888888 99999998652 13479999
Q ss_pred cccccC
Q 011622 149 RTHCAS 154 (481)
Q Consensus 149 R~~~~~ 154 (481)
.-.+..
T Consensus 147 gp~l~l 152 (711)
T TIGR00143 147 GPQLNF 152 (711)
T ss_pred CcEEEE
Confidence 887754
No 153
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=41.79 E-value=20 Score=32.25 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=46.2
Q ss_pred cccccCcchHHHHHHHhHhccCCcccceEEEEEecccccCCCCCCCCCChhhhhhcccccccccccccccCCCCcchhhh
Q 011622 396 YLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRVNHTSNTDHLILAY 475 (481)
Q Consensus 396 ~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~l~~~y 475 (481)
||==..+|||-++...|-.-+.+.++.+ .+.|.+. +. + -..||++|+..+-.-.|-|||.|
T Consensus 44 fllVP~d~tV~qF~~iIRkrl~l~~~k~-flfVnn~----lp------~--------~s~~mg~lYe~~KDeDGFLYi~Y 104 (121)
T PTZ00380 44 FLALPRDATVAELEAAVRQALGTSAKKV-TLAIEGS----TP------A--------VTATVGDIADACKRDDGFLYVSV 104 (121)
T ss_pred EEEcCCCCcHHHHHHHHHHHcCCChhHE-EEEECCc----cC------C--------ccchHHHHHHHhcCCCCeEEEEE
Confidence 5446678999999999999999999985 3333221 11 1 23578888888888889999988
Q ss_pred hh
Q 011622 476 RQ 477 (481)
Q Consensus 476 ~~ 477 (481)
.-
T Consensus 105 s~ 106 (121)
T PTZ00380 105 RT 106 (121)
T ss_pred cc
Confidence 63
No 154
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.16 E-value=11 Score=42.84 Aligned_cols=46 Identities=28% Similarity=0.611 Sum_probs=35.0
Q ss_pred cccccccccccceecccCCC-cccHHHHhhhhhc-C----CCCCCCccccccC
Q 011622 108 QCPICLGIIKKTRTVMECLH-RFCRECIDKSMRL-G----NNECPACRTHCAS 154 (481)
Q Consensus 108 ~CpICl~~l~~Pv~i~~CgH-~FC~~CI~~~l~~-~----~~~CP~CR~~~~~ 154 (481)
.|+||-.-+.-+.. -.||| ..|..|..+.... . .+.||+|+..+..
T Consensus 2 ~c~ic~~s~~~~~~-~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSPDFVGR-GSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCcccccc-ccccccccchhhhhhhhhhcccccccccCcccccceee
Confidence 59999887776664 78999 9999999886542 2 3568999985544
No 155
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=41.04 E-value=26 Score=38.41 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=20.8
Q ss_pred cccccccccccc---cceecccCCCcccHHHHhh
Q 011622 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDK 136 (481)
Q Consensus 106 ~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~ 136 (481)
--.|..|.-.|. .-..+-.||-+||..|-..
T Consensus 901 a~~cmacq~pf~afrrrhhcrncggifcg~cs~a 934 (990)
T KOG1819|consen 901 AEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCA 934 (990)
T ss_pred chhhhhccCcHHHHHHhhhhcccCceeecccccC
Confidence 345666765543 3344578999999999543
No 156
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=40.68 E-value=8 Score=29.35 Aligned_cols=32 Identities=34% Similarity=0.591 Sum_probs=19.5
Q ss_pred ccccc--ccccccc-----c--eecccCCCcccHHHHhhhh
Q 011622 107 VQCPI--CLGIIKK-----T--RTVMECLHRFCRECIDKSM 138 (481)
Q Consensus 107 l~CpI--Cl~~l~~-----P--v~i~~CgH~FC~~CI~~~l 138 (481)
..||- |..++.. . +....|++.||..|-..|-
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H 59 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPWH 59 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSESC
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcccC
Confidence 47887 8877652 2 5545699999999988773
No 157
>PRK04023 DNA polymerase II large subunit; Validated
Probab=39.79 E-value=22 Score=42.13 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=32.0
Q ss_pred cccccccccccccceecccCCC-----cccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKTRTVMECLH-----RFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH-----~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
...|+-|........ |..||. .||..|-.. . ....||.|......
T Consensus 626 ~RfCpsCG~~t~~fr-CP~CG~~Te~i~fCP~CG~~--~-~~y~CPKCG~El~~ 675 (1121)
T PRK04023 626 RRKCPSCGKETFYRR-CPFCGTHTEPVYRCPRCGIE--V-EEDECEKCGREPTP 675 (1121)
T ss_pred CccCCCCCCcCCccc-CCCCCCCCCcceeCccccCc--C-CCCcCCCCCCCCCc
Confidence 458999998764433 467984 599999332 2 33679999987765
No 158
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=39.58 E-value=38 Score=26.45 Aligned_cols=44 Identities=9% Similarity=0.155 Sum_probs=36.1
Q ss_pred EEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 378 RLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 378 ~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
.+.+.++++++++ +...|+.||..|-+.|+.++.+++...-|+.
T Consensus 2 ~i~v~~~~g~~~~------~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~ 45 (76)
T cd01806 2 LIKVKTLTGKEIE------IDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_pred EEEEEeCCCCEEE------EEECCCCCHHHHHHHHhHhhCCChhhEEEEE
Confidence 3555667887765 5678999999999999999999999877763
No 159
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=39.27 E-value=29 Score=30.20 Aligned_cols=29 Identities=31% Similarity=0.794 Sum_probs=22.3
Q ss_pred CCcccHHHHhhhhhc--------CCCCCCCccccccC
Q 011622 126 LHRFCRECIDKSMRL--------GNNECPACRTHCAS 154 (481)
Q Consensus 126 gH~FC~~CI~~~l~~--------~~~~CP~CR~~~~~ 154 (481)
.-.||..||..++.. ....||.||..+.-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnC 73 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNC 73 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCC
Confidence 678999999887742 34689999986654
No 160
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=38.74 E-value=12 Score=28.43 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=21.8
Q ss_pred cccc--cccccccc-------ceecccCCCcccHHHHhhhhh
Q 011622 107 VQCP--ICLGIIKK-------TRTVMECLHRFCRECIDKSMR 139 (481)
Q Consensus 107 l~Cp--ICl~~l~~-------Pv~i~~CgH~FC~~CI~~~l~ 139 (481)
..|| -|..++.. .+.+..|+|.||..|...|-.
T Consensus 19 ~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 19 KWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred cCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCCC
Confidence 3577 66554332 244347899999999888743
No 161
>PF12773 DZR: Double zinc ribbon
Probab=38.20 E-value=28 Score=25.49 Aligned_cols=27 Identities=22% Similarity=0.608 Sum_probs=15.5
Q ss_pred cccHHHHhhhh--hcCCCCCCCccccccC
Q 011622 128 RFCRECIDKSM--RLGNNECPACRTHCAS 154 (481)
Q Consensus 128 ~FC~~CI~~~l--~~~~~~CP~CR~~~~~ 154 (481)
.||..|=.... ......||.|...+..
T Consensus 13 ~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 13 KFCPHCGTPLPPPDQSKKICPNCGAENPP 41 (50)
T ss_pred cCChhhcCChhhccCCCCCCcCCcCCCcC
Confidence 36666655554 2234568888776543
No 162
>PF14353 CpXC: CpXC protein
Probab=38.16 E-value=26 Score=31.00 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=25.3
Q ss_pred ccccccccccccceecccCCCcccHHHHhhhhhc--CCCCCCCccccccC
Q 011622 107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCAS 154 (481)
Q Consensus 107 l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~~ 154 (481)
++||-|...+...+. +.-.-..=..=....+.. ...+||.|...+..
T Consensus 2 itCP~C~~~~~~~v~-~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVW-TSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEE-eEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 578888887775543 211111112223333331 23589999997754
No 163
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=38.03 E-value=37 Score=26.58 Aligned_cols=43 Identities=7% Similarity=0.222 Sum_probs=34.7
Q ss_pred EEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 379 LMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 379 l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
+.+-.++++.+. +...|+.||..|-+.|+.++.++++..-|+.
T Consensus 3 i~v~~~~g~~~~------~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~ 45 (76)
T cd01803 3 IFVKTLTGKTIT------LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_pred EEEEcCCCCEEE------EEECCcCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 444556666653 6788999999999999999999999888774
No 164
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=37.74 E-value=11 Score=34.81 Aligned_cols=27 Identities=19% Similarity=0.753 Sum_probs=19.4
Q ss_pred ccccccccccccceecccCCCcccH-HHHh
Q 011622 107 VQCPICLGIIKKTRTVMECLHRFCR-ECID 135 (481)
Q Consensus 107 l~CpICl~~l~~Pv~i~~CgH~FC~-~CI~ 135 (481)
-+|+||. +..+.+++.||..||. .|+.
T Consensus 119 ~fCaVCG--~~S~ysC~~CG~kyCsv~C~~ 146 (156)
T KOG3362|consen 119 KFCAVCG--YDSKYSCVNCGTKYCSVRCLK 146 (156)
T ss_pred hhhhhcC--CCchhHHHhcCCceeechhhh
Confidence 4788998 5666667889988875 4543
No 165
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=37.12 E-value=12 Score=38.80 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=30.9
Q ss_pred cccccccccccccceecc---cCC--CcccHHHHhhhhhcCCCCCCCccc
Q 011622 106 DVQCPICLGIIKKTRTVM---ECL--HRFCRECIDKSMRLGNNECPACRT 150 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~---~Cg--H~FC~~CI~~~l~~~~~~CP~CR~ 150 (481)
.-.||||.....-.+... .=| +.+|..|-..|-- ....||.|..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY-VRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc-cCccCCCCCC
Confidence 458999998765443211 233 5679999999976 4478999986
No 166
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=36.63 E-value=58 Score=28.86 Aligned_cols=81 Identities=20% Similarity=0.346 Sum_probs=60.4
Q ss_pred eEEEEeecCCCCCCCCCC-CcccccCcchHHHHHHHhHhccCCcccceEEEEEecccccCCCCCCCCCChhhhhhccccc
Q 011622 377 VRLMLVSADTQCAPSLQQ-PYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQE 455 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~-p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (481)
|++.+==-.+..+|.|.| =||- .--|+|-++..-|-..+.|.++.-=+++|++.....+ .
T Consensus 29 iPVIvEk~~~~~lp~lDK~KyLV-P~dltvgqfi~iIRkRiqL~~~kA~flfVn~~~p~ts------------------~ 89 (116)
T KOG1654|consen 29 IPVIVEKAGKSQLPDLDKKKYLV-PDDLTVGQFIKIIRKRIQLSPEKAFFLFVNNTSPPTS------------------A 89 (116)
T ss_pred CcEEEEecccccCcccccceeec-cccccHHHHHHHHHHHhccChhHeEEEEEcCcCCcch------------------h
Confidence 455555556888999988 5553 4569999999999999999999988888877644331 2
Q ss_pred ccccccccccCCCCcchhhhh
Q 011622 456 TLAGLRVNHTSNTDHLILAYR 476 (481)
Q Consensus 456 ~l~~l~~~~~~~~~~l~~~y~ 476 (481)
+++.|+...-.-.|-||+.|.
T Consensus 90 ~ms~~Ye~~kdeDgFLYm~Ys 110 (116)
T KOG1654|consen 90 TMSALYEEEKDEDGFLYMTYS 110 (116)
T ss_pred hHHHHHHhhcccCcEEEEEec
Confidence 466677777777888888885
No 167
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=35.46 E-value=16 Score=28.72 Aligned_cols=34 Identities=18% Similarity=0.490 Sum_probs=17.9
Q ss_pred cccccccccccc---cceecccCCCcccHHHHhhhhh
Q 011622 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMR 139 (481)
Q Consensus 106 ~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l~ 139 (481)
...|.+|...|. .....-.||+.||..|......
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 457999988774 3344567999999999876553
No 168
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=34.30 E-value=29 Score=40.25 Aligned_cols=48 Identities=25% Similarity=0.499 Sum_probs=36.1
Q ss_pred ccccccccc--ccccceecccCCCc-----ccHHHHhhhhh-cCCCCCCCccccccC
Q 011622 106 DVQCPICLG--IIKKTRTVMECLHR-----FCRECIDKSMR-LGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~--~l~~Pv~i~~CgH~-----FC~~CI~~~l~-~~~~~CP~CR~~~~~ 154 (481)
...|-||.. .-.+|.. -||..+ .+..|+..|+. .+...|-.|..++.-
T Consensus 12 ~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred chhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 468999975 4557775 677653 48999999998 345689999987654
No 169
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=33.44 E-value=27 Score=36.24 Aligned_cols=45 Identities=7% Similarity=-0.180 Sum_probs=34.2
Q ss_pred cCcccccccccccccceecccCCC-cccHHHHhhhhhcCCCCCCCccccc
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHC 152 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH-~FC~~CI~~~l~~~~~~CP~CR~~~ 152 (481)
-..+.|..|..-+...+- .+|+| .||..|.... ...+||.|....
T Consensus 341 ~s~~~~~~~~~~~~st~~-~~~~~n~~~~~~a~~s---~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLLSTIW-SGGNMNLSPGSLASAS---ASPTSSTCDHND 386 (394)
T ss_pred hhhcccccccCceeeeEe-ecCCcccChhhhhhcc---cCCccccccccc
Confidence 346789999887776664 89998 7899998733 347899997644
No 170
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=33.42 E-value=13 Score=43.02 Aligned_cols=50 Identities=16% Similarity=0.316 Sum_probs=35.9
Q ss_pred Cccccccccccccc-ceecccCCCcccHHHHhhhhh-----cCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKK-TRTVMECLHRFCRECIDKSMR-----LGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~-Pv~i~~CgH~FC~~CI~~~l~-----~~~~~CP~CR~~~~~ 154 (481)
..-.|..|...+.+ --.+..|++.||..|+..|.- .....|+.|+..+..
T Consensus 228 ~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~ 283 (889)
T KOG1356|consen 228 IREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNK 283 (889)
T ss_pred cchhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcCC
Confidence 34578889887665 334578999999999999951 122467887776665
No 171
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=32.22 E-value=31 Score=35.85 Aligned_cols=31 Identities=35% Similarity=0.622 Sum_probs=20.6
Q ss_pred ccCCCcccHHHHhhhhhc-----C----CCCCCCccccccC
Q 011622 123 MECLHRFCRECIDKSMRL-----G----NNECPACRTHCAS 154 (481)
Q Consensus 123 ~~CgH~FC~~CI~~~l~~-----~----~~~CP~CR~~~~~ 154 (481)
.|||| .|..=-..+|.. + ...||.|.+.+..
T Consensus 376 ~PCGH-v~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 376 NPCGH-VCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred CCccc-ccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 68999 455555555542 1 2479999988765
No 172
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=32.02 E-value=15 Score=37.29 Aligned_cols=52 Identities=23% Similarity=0.493 Sum_probs=37.4
Q ss_pred cCccccccccccccc---------ceecccCCCcccHHHHh-hhhhc---------CCCCCCCccccccCCC
Q 011622 104 RKDVQCPICLGIIKK---------TRTVMECLHRFCRECID-KSMRL---------GNNECPACRTHCASRR 156 (481)
Q Consensus 104 ~~~l~CpICl~~l~~---------Pv~i~~CgH~FC~~CI~-~~l~~---------~~~~CP~CR~~~~~~~ 156 (481)
...+.|++|-..|.. ..+ ++|...||..-+. .||-+ ..+.||.|.+.|..+.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~-l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRS 229 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHT-LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRS 229 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccC-CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchH
Confidence 457899999987763 222 6888888887775 46632 3468999999888744
No 173
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=31.40 E-value=22 Score=36.87 Aligned_cols=45 Identities=16% Similarity=0.346 Sum_probs=31.6
Q ss_pred Ccccccccccccccceecc--cCC--CcccHHHHhhhhhcCCCCCCCccc
Q 011622 105 KDVQCPICLGIIKKTRTVM--ECL--HRFCRECIDKSMRLGNNECPACRT 150 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~--~Cg--H~FC~~CI~~~l~~~~~~CP~CR~ 150 (481)
..-.||||.....-.+... .=| |.+|..|-..|-- ....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV-VRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc-cCccCCCCCC
Confidence 4578999998765443211 234 4569999999876 4478999986
No 175
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=30.81 E-value=20 Score=40.27 Aligned_cols=27 Identities=30% Similarity=0.840 Sum_probs=19.8
Q ss_pred eecccCCCcccHHHHhhhhhcCCCCCCCccc
Q 011622 120 RTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (481)
Q Consensus 120 v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 150 (481)
..+..|++.|+..|+.. .+..||.|-.
T Consensus 532 ~rC~~C~avfH~~C~~r----~s~~CPrC~R 558 (580)
T KOG1829|consen 532 RRCSTCLAVFHKKCLRR----KSPCCPRCER 558 (580)
T ss_pred eeHHHHHHHHHHHHHhc----cCCCCCchHH
Confidence 34467999999999764 4455999954
No 176
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=30.75 E-value=25 Score=34.08 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=0.0
Q ss_pred cccccccCcccccccccccc-cc-----eecccCCCcccHHHH
Q 011622 98 VELPEIRKDVQCPICLGIIK-KT-----RTVMECLHRFCRECI 134 (481)
Q Consensus 98 ~~~~~l~~~l~CpICl~~l~-~P-----v~i~~CgH~FC~~CI 134 (481)
.++.-|...+.|-||..... -+ .+ ..-.|.|...||
T Consensus 93 YKLhGL~~ey~CEICGN~~Y~GrkaFekHF-~E~rH~~GlrcL 134 (196)
T PF11931_consen 93 YKLHGLGVEYKCEICGNQSYKGRKAFEKHF-QEWRHAYGLRCL 134 (196)
T ss_dssp -------------------------------------------
T ss_pred HHHhCCCCeeeeEeCCCcceecHHHHHHhc-ChhHHHccChhc
Confidence 45556788999999998654 22 33 557788888887
No 177
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=30.31 E-value=30 Score=24.29 Aligned_cols=13 Identities=23% Similarity=0.715 Sum_probs=9.1
Q ss_pred ccccccccccccc
Q 011622 107 VQCPICLGIIKKT 119 (481)
Q Consensus 107 l~CpICl~~l~~P 119 (481)
..||-|...|.-|
T Consensus 3 i~CP~C~~~f~v~ 15 (37)
T PF13719_consen 3 ITCPNCQTRFRVP 15 (37)
T ss_pred EECCCCCceEEcC
Confidence 4688888777644
No 178
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=29.62 E-value=72 Score=25.14 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=27.2
Q ss_pred ccccCcchHHHHHHHhHhccCC--cccceEEEE
Q 011622 397 LCCQPSLSVKQLCEYVSLQTPL--QAEEVEILM 427 (481)
Q Consensus 397 l~c~p~~~~~~l~~~va~q~~~--~~~e~e~~~ 427 (481)
|.+.|+.||..|-+.|+.++++ +++..-|+.
T Consensus 15 l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~ 47 (77)
T cd01805 15 IEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY 47 (77)
T ss_pred EEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE
Confidence 6788999999999999999998 888876663
No 179
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=29.54 E-value=40 Score=26.05 Aligned_cols=42 Identities=29% Similarity=0.650 Sum_probs=29.4
Q ss_pred cccccccccccc---cceecccCCCcccHHHHhhhhhcCCCCCCC--ccccc
Q 011622 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPA--CRTHC 152 (481)
Q Consensus 106 ~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~--CR~~~ 152 (481)
.-.|++|...|. +-|.+..||-.|++.|... ...|-. |.+.+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~-----~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK-----AGGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh-----CCceEeccCCCCc
Confidence 457999999994 3455678999999999653 244544 55543
No 180
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=28.55 E-value=57 Score=25.10 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=28.3
Q ss_pred ccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 397 LCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 397 l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
+.+.|+-||..|-+.|+.++.++++.+-|+.
T Consensus 10 ~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~ 40 (69)
T PF00240_consen 10 LEVDPDDTVADLKQKIAEETGIPPEQQRLIY 40 (69)
T ss_dssp EEEETTSBHHHHHHHHHHHHTSTGGGEEEEE
T ss_pred EEECCCCCHHHhhhhcccccccccccceeee
Confidence 5678999999999999999999999998875
No 181
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=28.09 E-value=49 Score=38.14 Aligned_cols=48 Identities=17% Similarity=0.352 Sum_probs=35.1
Q ss_pred ccccccccccccc-ceecccCCCcccHHHHhhhhhcCCCCCCC--ccccccC
Q 011622 106 DVQCPICLGIIKK-TRTVMECLHRFCRECIDKSMRLGNNECPA--CRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~-Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~--CR~~~~~ 154 (481)
...|.+|..++.- -+.+--|||.-+..|+..|+. +...||. |...+..
T Consensus 779 ~~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~-~~s~ca~~~C~~~c~~ 829 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFF-KASPCAKSICPHLCHY 829 (839)
T ss_pred hcCceeecceeeeeEeecccccccccHHHHHHHHh-cCCCCccccCCccccc
Confidence 4479999887663 233345999999999999998 5577877 7665544
No 182
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.81 E-value=34 Score=37.08 Aligned_cols=36 Identities=28% Similarity=0.647 Sum_probs=25.4
Q ss_pred cceecccCCCcccHHHHhhhhh-------------------------cCCCCCCCccccccC
Q 011622 118 KTRTVMECLHRFCRECIDKSMR-------------------------LGNNECPACRTHCAS 154 (481)
Q Consensus 118 ~Pv~i~~CgH~FC~~CI~~~l~-------------------------~~~~~CP~CR~~~~~ 154 (481)
.+|. -.|||.||..|...|-. .+...||.|..++..
T Consensus 178 ~~v~-C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek 238 (444)
T KOG1815|consen 178 VEVD-CGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEK 238 (444)
T ss_pred ccee-CCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhc
Confidence 3454 67999999999876642 233468888887765
No 183
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=27.77 E-value=19 Score=22.82 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=5.1
Q ss_pred CCCCCCcccc
Q 011622 142 NNECPACRTH 151 (481)
Q Consensus 142 ~~~CP~CR~~ 151 (481)
...||.|.++
T Consensus 13 ~~fC~~CG~~ 22 (23)
T PF13240_consen 13 AKFCPNCGTP 22 (23)
T ss_pred CcchhhhCCc
Confidence 3446665543
No 184
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=27.73 E-value=43 Score=28.54 Aligned_cols=38 Identities=18% Similarity=0.603 Sum_probs=28.1
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.-.|-||...+..+ ||.||..|.. ....|.+|...+..
T Consensus 44 ~~~C~~CK~~v~q~------g~~YCq~CAY-----kkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP------GAKYCQTCAY-----KKGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC------CCccChhhhc-----ccCcccccCCeecc
Confidence 35799998765443 6789999954 24789999997754
No 185
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=27.55 E-value=29 Score=38.17 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=27.6
Q ss_pred ccCcccccccccccccceecccCCCcccHHHHhhhhhc-----------CCCCCCCccccccC
Q 011622 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-----------GNNECPACRTHCAS 154 (481)
Q Consensus 103 l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~-----------~~~~CP~CR~~~~~ 154 (481)
|...+.|..|..+-..--....=--.||..|+...-.. +-+.||.|...+..
T Consensus 2 l~~L~fC~~C~~irc~~c~~~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~ 64 (483)
T PF05502_consen 2 LEELYFCEHCHKIRCPRCVSEEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSV 64 (483)
T ss_pred cccceecccccccCChhhcccccceeECccccccCChhhheeccceeccccccCCCCCCccee
Confidence 34566777777654311100122235777777554320 22568888876654
No 186
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=26.60 E-value=38 Score=23.72 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=7.7
Q ss_pred cccccccccccc
Q 011622 107 VQCPICLGIIKK 118 (481)
Q Consensus 107 l~CpICl~~l~~ 118 (481)
+.||-|...|.-
T Consensus 3 i~Cp~C~~~y~i 14 (36)
T PF13717_consen 3 ITCPNCQAKYEI 14 (36)
T ss_pred EECCCCCCEEeC
Confidence 467777766653
No 187
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=26.54 E-value=31 Score=30.12 Aligned_cols=27 Identities=19% Similarity=0.491 Sum_probs=17.3
Q ss_pred ceecccCCCcccHHHHhhhhhcCCCCCCCccc
Q 011622 119 TRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (481)
Q Consensus 119 Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 150 (481)
|..++.|||.|=.. ..-+- .-||.|..
T Consensus 2 pH~CtrCG~vf~~g--~~~il---~GCp~CG~ 28 (112)
T COG3364 2 PHQCTRCGEVFDDG--SEEIL---SGCPKCGC 28 (112)
T ss_pred Cceecccccccccc--cHHHH---ccCccccc
Confidence 45578899988664 22222 34999875
No 188
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.21 E-value=28 Score=29.75 Aligned_cols=12 Identities=42% Similarity=1.107 Sum_probs=11.1
Q ss_pred cccHHHHhhhhh
Q 011622 128 RFCRECIDKSMR 139 (481)
Q Consensus 128 ~FC~~CI~~~l~ 139 (481)
-||+.|+..|+.
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999997
No 189
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=25.49 E-value=60 Score=25.84 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=27.8
Q ss_pred ccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 397 LCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 397 l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
|.+.|+.||..|-++||.+.++++++.-|+.
T Consensus 13 l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~ 43 (70)
T cd01794 13 LSVSSKDTVGQLKKQLQAAEGVDPCCQRWFF 43 (70)
T ss_pred EEECCcChHHHHHHHHHHHhCCCHHHeEEEE
Confidence 6788999999999999999999999887753
No 190
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=25.09 E-value=24 Score=37.67 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=0.0
Q ss_pred ccccccccccccc-------------ceecccCCCcccHHHHhhhhhc-----CCCCCCCcccccc
Q 011622 106 DVQCPICLGIIKK-------------TRTVMECLHRFCRECIDKSMRL-----GNNECPACRTHCA 153 (481)
Q Consensus 106 ~l~CpICl~~l~~-------------Pv~i~~CgH~FC~~CI~~~l~~-----~~~~CP~CR~~~~ 153 (481)
..+||+=+..|.- |..-+.|||.+-+. .|-.. ....||+|+.+-.
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccCC
Confidence 4579988776643 33337899987663 45431 2568999998543
No 191
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=25.05 E-value=84 Score=34.40 Aligned_cols=13 Identities=23% Similarity=0.583 Sum_probs=8.3
Q ss_pred ccccccccccccc
Q 011622 107 VQCPICLGIIKKT 119 (481)
Q Consensus 107 l~CpICl~~l~~P 119 (481)
+-|+||-..|..-
T Consensus 293 lyC~vCnKsFKse 305 (508)
T KOG0717|consen 293 LYCVVCNKSFKSE 305 (508)
T ss_pred eEEeeccccccch
Confidence 6677777666643
No 192
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=23.91 E-value=30 Score=34.79 Aligned_cols=48 Identities=23% Similarity=0.506 Sum_probs=34.1
Q ss_pred ccccccccccccc----ceecccCC-----CcccHHHHhhhhh-cCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKK----TRTVMECL-----HRFCRECIDKSMR-LGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~----Pv~i~~Cg-----H~FC~~CI~~~l~-~~~~~CP~CR~~~~~ 154 (481)
...|-||...... +. +.||. +..++.|+..|+. .+...|..|...+..
T Consensus 78 ~~~cRIc~~~~~~~~~~~l-~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLL-ISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEeccccccccccc-ccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4679999985432 22 35654 3458999999998 456789999886654
No 193
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=23.64 E-value=50 Score=37.68 Aligned_cols=45 Identities=22% Similarity=0.499 Sum_probs=22.8
Q ss_pred cccccccccc-cceecccCCCc----ccHHHHhhhhhcCCCCCCCcccccc
Q 011622 108 QCPICLGIIK-KTRTVMECLHR----FCRECIDKSMRLGNNECPACRTHCA 153 (481)
Q Consensus 108 ~CpICl~~l~-~Pv~i~~CgH~----FC~~CI~~~l~~~~~~CP~CR~~~~ 153 (481)
.||-|..... ...++..||.. +|..|=...-. +...||.|.+.+.
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~CG~~~~~-~~~fC~~CG~~~~ 52 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGTSLTHKPCPQCGTEVPV-DEAHCPNCGAETG 52 (645)
T ss_pred cCCCCCCcCCCCCccccccCCCCCCCcCCCCCCCCCc-ccccccccCCccc
Confidence 5777765432 23334445533 35555443222 4456777776544
No 194
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=23.29 E-value=44 Score=29.37 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=39.6
Q ss_pred ceeEEEEeecCCC-CCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEEEecccccCCCCCCCCCChhhhhhccc
Q 011622 375 LDVRLMLVSADTQ-CAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEG 453 (481)
Q Consensus 375 ~~~~l~l~~~d~~-~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 453 (481)
+.|.|.|+ |+. ..| +.+-|+.||..|.++|-.+-+- +.+. + ..+.+.. .....- .+|+.
T Consensus 3 i~lkf~l~--~G~d~~~------~~~~~~~TV~~lKe~i~~~WP~---d~~~---~---p~s~~~l-RLI~~G--riL~d 62 (111)
T PF13881_consen 3 IELKFRLA--DGKDIGP------FRFDPSTTVADLKERIWAEWPE---DWEE---R---PKSPSDL-RLIYAG--RILED 62 (111)
T ss_dssp EEEEEEET--TS-EEEE------EEE-TTSBHHHHHHHHHHSSST---TSSS---T---T-SGGGE-EEEETT--EEE-S
T ss_pred EEEEEEEe--CCCcccc------cccCccChHHHHHHHHHHHCcc---cccc---C---CCChhhE-EEEeCC--eecCC
Confidence 44555554 888 444 3478899999999999986532 2111 0 0000000 001111 37899
Q ss_pred ccccccccccccCCCC
Q 011622 454 QETLAGLRVNHTSNTD 469 (481)
Q Consensus 454 ~~~l~~l~~~~~~~~~ 469 (481)
.+||++++..+....|
T Consensus 63 ~~tL~~~~~~~~~~~~ 78 (111)
T PF13881_consen 63 NKTLSDCRLPSGETPG 78 (111)
T ss_dssp SSBTGGGT--TTSETT
T ss_pred cCcHHHhCCCCCCCCC
Confidence 9999999877655544
No 195
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=23.07 E-value=65 Score=31.14 Aligned_cols=41 Identities=32% Similarity=0.698 Sum_probs=27.7
Q ss_pred cCccccccccc-ccc------cceecccCCCcccHHHHhhhhhcCCCCCCCccc
Q 011622 104 RKDVQCPICLG-IIK------KTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (481)
Q Consensus 104 ~~~l~CpICl~-~l~------~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 150 (481)
...+.|.+|.. .+. ..+.+..|+..|+..|... ..||.|..
T Consensus 150 ~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~------~~CpkC~R 197 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK------KSCPKCAR 197 (202)
T ss_pred hCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC------CCCCCcHh
Confidence 34677888874 221 2244467999999999752 56999954
No 196
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.99 E-value=89 Score=36.34 Aligned_cols=10 Identities=40% Similarity=0.498 Sum_probs=5.1
Q ss_pred cccccCCCCC
Q 011622 312 GRESRGISPG 321 (481)
Q Consensus 312 ~re~~~~~~~ 321 (481)
..++-.+-||
T Consensus 720 V~esq~aEPG 729 (1118)
T KOG1029|consen 720 VFESQAAEPG 729 (1118)
T ss_pred EehhccCCcc
Confidence 4455555554
No 197
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.56 E-value=48 Score=36.10 Aligned_cols=50 Identities=24% Similarity=0.671 Sum_probs=36.2
Q ss_pred ccccccCccccccc-ccccccceec-ccCCCcccHHHHhhhhhcCCCCCCCccc
Q 011622 99 ELPEIRKDVQCPIC-LGIIKKTRTV-MECLHRFCRECIDKSMRLGNNECPACRT 150 (481)
Q Consensus 99 ~~~~l~~~l~CpIC-l~~l~~Pv~i-~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 150 (481)
.+-.+.+.+.|++| ...|...+.+ -.|.-+||-.||...+.. ..|+.|-+
T Consensus 212 ~v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~ 263 (448)
T KOG0314|consen 212 TVGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGA 263 (448)
T ss_pred HhccCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchh
Confidence 33445778999999 7788877654 458899999999887762 44555544
No 198
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=22.25 E-value=41 Score=38.98 Aligned_cols=32 Identities=28% Similarity=0.583 Sum_probs=25.0
Q ss_pred ccccccccccc--------cceecccCCCcccHHHHhhhh
Q 011622 107 VQCPICLGIIK--------KTRTVMECLHRFCRECIDKSM 138 (481)
Q Consensus 107 l~CpICl~~l~--------~Pv~i~~CgH~FC~~CI~~~l 138 (481)
..|..|...|. ....+-.||..||..|-....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 46999999884 234467899999999987654
No 199
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=22.14 E-value=42 Score=30.54 Aligned_cols=27 Identities=19% Similarity=0.497 Sum_probs=17.2
Q ss_pred ceecccCCCcccHHHHhhhhhcCCCCCCCccc
Q 011622 119 TRTVMECLHRFCRECIDKSMRLGNNECPACRT 150 (481)
Q Consensus 119 Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~ 150 (481)
|..++.||+.|=..-.. ++ .-||.|..
T Consensus 1 PH~Ct~Cg~~f~dgs~e-il----~GCP~CGg 27 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGSKE-IL----SGCPECGG 27 (131)
T ss_pred CcccCcCCCCcCCCcHH-HH----ccCcccCC
Confidence 44568889888644322 23 34999976
No 200
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=21.61 E-value=56 Score=23.30 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=15.5
Q ss_pred cccccccccc-ceecccCCCcccHH
Q 011622 109 CPICLGIIKK-TRTVMECLHRFCRE 132 (481)
Q Consensus 109 CpICl~~l~~-Pv~i~~CgH~FC~~ 132 (481)
|.+|.....- |....-|+..||..
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCCccccc
Confidence 5567664444 77655588888863
No 201
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=20.90 E-value=80 Score=24.63 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=26.9
Q ss_pred ccccCcchHHHHHHHhHhccCCcccceEEE
Q 011622 397 LCCQPSLSVKQLCEYVSLQTPLQAEEVEIL 426 (481)
Q Consensus 397 l~c~p~~~~~~l~~~va~q~~~~~~e~e~~ 426 (481)
|-+.|+.||+.|-++||.++.+++.+.-|+
T Consensus 13 ~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li 42 (70)
T cd01798 13 VEVDPDTDIKQLKEVVAKRQGVPPDQLRVI 42 (70)
T ss_pred EEECCCChHHHHHHHHHHHHCCCHHHeEEE
Confidence 567899999999999999999999987764
No 202
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=20.83 E-value=5.4e+02 Score=28.19 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=41.1
Q ss_pred ccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 107 l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
+.|.|-.++...||....-||.|=..-|.+++. .+..||.-..+++.
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~-e~G~DPIt~~pLs~ 47 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIA-ETGKDPITNEPLSI 47 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHH-HcCCCCCCCCcCCH
Confidence 369999999999998777999999999999998 45889998887765
No 203
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.32 E-value=44 Score=33.68 Aligned_cols=31 Identities=26% Similarity=0.682 Sum_probs=20.9
Q ss_pred ccccccccccccc-------------eecccCCCcc-------cHHHHhhh
Q 011622 107 VQCPICLGIIKKT-------------RTVMECLHRF-------CRECIDKS 137 (481)
Q Consensus 107 l~CpICl~~l~~P-------------v~i~~CgH~F-------C~~CI~~~ 137 (481)
|+|-+|.+.+..| ++++.|+-+| +-.||..-
T Consensus 4 FtCnvCgEsvKKp~vekH~srCrn~~fSCIDC~k~F~~~sYknH~kCITEa 54 (276)
T KOG2186|consen 4 FTCNVCGESVKKPQVEKHMSRCRNAYFSCIDCGKTFERVSYKNHTKCITEA 54 (276)
T ss_pred EehhhhhhhccccchHHHHHhccCCeeEEeecccccccchhhhhhhhcchH
Confidence 6799999988776 3456677666 45566443
No 204
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=20.26 E-value=1.3e+02 Score=23.14 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=32.4
Q ss_pred EeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 381 LVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 381 l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
+-.++++.++ +...|+.||..|.+-|+.++..++...-|+.
T Consensus 5 vk~~~g~~~~------~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 45 (72)
T cd01809 5 VKTLDSQTHT------FTVEEEITVLDLKEKIAEEVGIPVEQQRLIY 45 (72)
T ss_pred EEeCCCCEEE------EEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 3345555543 6778899999999999999999999887775
No 205
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.24 E-value=12 Score=39.69 Aligned_cols=47 Identities=19% Similarity=0.419 Sum_probs=36.5
Q ss_pred ccccccccccccc---eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 107 VQCPICLGIIKKT---RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 107 l~CpICl~~l~~P---v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
-.|.||..-+..- ..-+-|||.+...||.+|+.. ...||.|+..+..
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPK 246 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhh
Confidence 4689998877633 222679999999999999984 5789999886654
No 206
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=20.15 E-value=34 Score=36.52 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=0.0
Q ss_pred ccCCCcccHHHHhhhhhc----C----CCCCCCccccccC
Q 011622 123 MECLHRFCRECIDKSMRL----G----NNECPACRTHCAS 154 (481)
Q Consensus 123 ~~CgH~FC~~CI~~~l~~----~----~~~CP~CR~~~~~ 154 (481)
.||||..-.....-|... + ...||.|-.++..
T Consensus 363 ~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 363 NPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------
T ss_pred cccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 689996555555555541 1 2479999998865
Done!