Query 011622
Match_columns 481
No_of_seqs 360 out of 1964
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 11:57:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fl2_A E3 ubiquitin-protein li 99.5 8.2E-15 2.8E-19 128.4 4.4 75 100-175 46-120 (124)
2 1jm7_B BARD1, BRCA1-associated 99.5 7.9E-15 2.7E-19 127.4 3.6 91 99-193 15-116 (117)
3 1t1h_A Gspef-atpub14, armadill 99.5 1.8E-14 6.2E-19 115.8 5.1 68 103-172 5-72 (78)
4 2ckl_B Ubiquitin ligase protei 99.5 2.1E-14 7.1E-19 131.8 4.6 78 99-176 47-124 (165)
5 3ztg_A E3 ubiquitin-protein li 99.5 3.8E-14 1.3E-18 117.4 5.7 71 102-173 9-81 (92)
6 4ayc_A E3 ubiquitin-protein li 99.4 3E-13 1E-17 120.8 10.3 64 105-173 52-115 (138)
7 2ckl_A Polycomb group ring fin 99.4 8.4E-14 2.9E-18 119.0 5.2 78 98-176 7-87 (108)
8 2kr4_A Ubiquitin conjugation f 99.4 8.8E-14 3E-18 114.7 5.1 67 103-172 11-77 (85)
9 1z6u_A NP95-like ring finger p 99.4 7.1E-14 2.4E-18 127.1 4.3 73 101-174 73-145 (150)
10 3lrq_A E3 ubiquitin-protein li 99.4 5E-14 1.7E-18 119.2 2.9 74 97-171 13-86 (100)
11 2kre_A Ubiquitin conjugation f 99.4 1.7E-13 5.9E-18 116.5 5.2 68 102-172 25-92 (100)
12 1wgm_A Ubiquitin conjugation f 99.4 4.1E-13 1.4E-17 113.7 7.1 68 102-172 18-86 (98)
13 2y43_A E3 ubiquitin-protein li 99.4 1.5E-13 5.2E-18 115.5 4.2 71 100-172 16-86 (99)
14 2egp_A Tripartite motif-contai 99.4 8.8E-14 3E-18 111.6 2.1 65 102-168 8-78 (79)
15 3l11_A E3 ubiquitin-protein li 99.3 2.5E-13 8.7E-18 117.2 3.4 72 102-174 11-88 (115)
16 2ecw_A Tripartite motif-contai 99.3 4.6E-13 1.6E-17 108.3 3.6 66 101-168 14-84 (85)
17 3hct_A TNF receptor-associated 99.3 5.4E-13 1.9E-17 115.9 4.3 77 97-175 9-85 (118)
18 2djb_A Polycomb group ring fin 99.3 9.7E-13 3.3E-17 104.3 5.1 53 101-154 10-62 (72)
19 2ecv_A Tripartite motif-contai 99.3 5.6E-13 1.9E-17 107.8 3.3 66 101-168 14-84 (85)
20 2yur_A Retinoblastoma-binding 99.3 1.7E-12 5.9E-17 103.6 5.0 56 102-158 11-68 (74)
21 2c2l_A CHIP, carboxy terminus 99.3 1.2E-12 4E-17 128.1 4.6 68 104-173 206-273 (281)
22 2csy_A Zinc finger protein 183 99.3 1.5E-12 5.1E-17 105.4 4.1 60 104-167 13-72 (81)
23 1jm7_A BRCA1, breast cancer ty 99.3 7.8E-13 2.7E-17 113.0 2.5 72 101-174 16-89 (112)
24 2yu4_A E3 SUMO-protein ligase 99.3 1.5E-12 5E-17 109.2 4.1 69 103-173 4-81 (94)
25 2ecy_A TNF receptor-associated 99.3 2.1E-12 7.1E-17 100.6 4.6 52 102-154 11-62 (66)
26 2f42_A STIP1 homology and U-bo 99.2 3.1E-12 1.1E-16 119.6 4.9 70 101-172 101-170 (179)
27 3knv_A TNF receptor-associated 99.2 2.1E-12 7.2E-17 116.2 3.1 83 92-175 16-107 (141)
28 2ysl_A Tripartite motif-contai 99.2 8.6E-12 2.9E-16 98.5 6.2 53 101-154 15-69 (73)
29 1rmd_A RAG1; V(D)J recombinati 99.2 2.9E-12 9.9E-17 110.7 3.4 73 102-175 19-91 (116)
30 3hcs_A TNF receptor-associated 99.2 5.2E-12 1.8E-16 116.2 4.1 80 94-175 6-85 (170)
31 2ct2_A Tripartite motif protei 99.2 1.3E-11 4.3E-16 100.8 4.3 52 102-154 11-68 (88)
32 2ysj_A Tripartite motif-contai 99.2 1.5E-11 5.2E-16 94.7 4.2 47 101-148 15-63 (63)
33 3ng2_A RNF4, snurf, ring finge 99.2 1.4E-11 4.6E-16 96.7 3.8 49 104-154 8-63 (71)
34 2d8t_A Dactylidin, ring finger 99.1 1.7E-11 5.9E-16 96.8 3.8 49 104-154 13-61 (71)
35 3htk_C E3 SUMO-protein ligase 99.1 2.1E-11 7.3E-16 119.6 5.2 68 102-170 177-247 (267)
36 1g25_A CDK-activating kinase a 99.1 1.5E-11 5.2E-16 95.4 3.0 49 106-154 3-55 (65)
37 2ea6_A Ring finger protein 4; 99.1 1.9E-11 6.5E-16 95.1 3.4 50 103-154 12-68 (69)
38 2ecj_A Tripartite motif-contai 99.1 4.3E-11 1.5E-15 90.1 4.3 46 102-148 11-58 (58)
39 2ect_A Ring finger protein 126 99.1 5.8E-11 2E-15 95.1 4.5 51 104-155 13-65 (78)
40 2xeu_A Ring finger protein 4; 99.1 3.1E-11 1.1E-15 92.5 2.2 48 106-154 3-56 (64)
41 1e4u_A Transcriptional repress 99.1 1.2E-10 4E-15 94.6 5.3 53 103-156 8-64 (78)
42 1chc_A Equine herpes virus-1 r 99.1 4.8E-11 1.6E-15 93.0 2.8 49 105-154 4-52 (68)
43 1x4j_A Ring finger protein 38; 99.1 8.4E-11 2.9E-15 93.7 4.2 52 102-154 19-72 (75)
44 2ecn_A Ring finger protein 141 99.0 5.8E-11 2E-15 93.2 2.9 50 102-154 11-60 (70)
45 1iym_A EL5; ring-H2 finger, ub 99.0 1.1E-10 3.8E-15 87.1 4.0 48 104-153 3-54 (55)
46 2kiz_A E3 ubiquitin-protein li 99.0 1.6E-10 5.5E-15 90.4 4.2 49 105-154 13-63 (69)
47 2ep4_A Ring finger protein 24; 99.0 1.6E-10 5.3E-15 91.7 3.9 51 103-154 12-64 (74)
48 2l0b_A E3 ubiquitin-protein li 99.0 1.7E-10 5.9E-15 95.7 3.5 50 103-154 37-89 (91)
49 2ecm_A Ring finger and CHY zin 99.0 1.8E-10 6.2E-15 85.8 3.1 47 106-153 5-54 (55)
50 1v87_A Deltex protein 2; ring- 98.9 4.4E-10 1.5E-14 96.4 4.6 50 106-155 25-95 (114)
51 1bor_A Transcription factor PM 98.9 3E-10 1E-14 86.0 2.8 45 105-154 5-49 (56)
52 4ap4_A E3 ubiquitin ligase RNF 98.9 6.3E-10 2.2E-14 96.8 3.6 49 104-154 5-60 (133)
53 4ic3_A E3 ubiquitin-protein li 98.9 3.2E-10 1.1E-14 90.6 1.6 49 100-154 18-67 (74)
54 2ecl_A Ring-box protein 2; RNF 98.8 1.5E-09 5.1E-14 88.3 4.1 49 105-154 14-76 (81)
55 2y1n_A E3 ubiquitin-protein li 98.8 2.5E-09 8.7E-14 110.6 3.8 53 103-156 329-381 (389)
56 2ecg_A Baculoviral IAP repeat- 98.7 4.6E-09 1.6E-13 84.0 3.5 48 101-154 20-68 (75)
57 3dpl_R Ring-box protein 1; ubi 98.7 6.7E-09 2.3E-13 89.1 4.1 48 105-153 36-100 (106)
58 4ap4_A E3 ubiquitin ligase RNF 98.7 3.3E-09 1.1E-13 92.2 1.2 49 104-154 70-125 (133)
59 2yho_A E3 ubiquitin-protein li 98.6 5.2E-09 1.8E-13 84.9 1.3 48 101-154 13-61 (79)
60 2vje_A E3 ubiquitin-protein li 98.6 1E-08 3.5E-13 79.8 2.7 48 105-154 7-57 (64)
61 2bay_A PRE-mRNA splicing facto 98.6 9.9E-09 3.4E-13 79.4 1.5 53 106-161 3-56 (61)
62 2vje_B MDM4 protein; proto-onc 98.6 2.1E-08 7.1E-13 77.7 2.8 47 106-154 7-56 (63)
63 4a0k_B E3 ubiquitin-protein li 98.5 1.4E-08 4.8E-13 88.6 0.2 47 106-153 48-111 (117)
64 3t6p_A Baculoviral IAP repeat- 98.5 4E-08 1.4E-12 100.5 2.6 50 99-154 288-338 (345)
65 1wim_A KIAA0161 protein; ring 98.4 9.3E-08 3.2E-12 79.4 2.5 47 105-151 4-61 (94)
66 2ea5_A Cell growth regulator w 98.4 1.5E-07 5.2E-12 74.1 3.3 44 105-154 14-58 (68)
67 2d8s_A Cellular modulator of i 98.3 3.4E-07 1.2E-11 74.5 4.1 52 106-158 15-74 (80)
68 2ct0_A Non-SMC element 1 homol 98.2 1.2E-06 4E-11 70.4 4.4 49 106-154 15-64 (74)
69 3vk6_A E3 ubiquitin-protein li 98.1 1.9E-06 6.3E-11 72.6 3.6 47 108-154 3-49 (101)
70 3k1l_B Fancl; UBC, ring, RWD, 97.5 1.8E-05 6.2E-10 80.4 0.9 49 106-154 308-373 (381)
71 1vyx_A ORF K3, K3RING; zinc-bi 97.5 7.2E-05 2.4E-09 57.4 3.7 48 106-154 6-59 (60)
72 3nw0_A Non-structural maintena 96.7 0.00096 3.3E-08 64.7 4.1 49 106-154 180-229 (238)
73 3m62_A Ubiquitin conjugation f 96.0 0.0044 1.5E-07 70.5 4.9 66 104-172 889-955 (968)
74 2jun_A Midline-1; B-BOX, TRIM, 95.1 0.0074 2.5E-07 50.0 1.8 34 105-138 2-37 (101)
75 3i2d_A E3 SUMO-protein ligase 93.5 0.028 9.4E-07 57.7 2.3 66 104-171 247-316 (371)
76 3h9d_A ATG8, microtubule-assoc 92.7 0.084 2.9E-06 45.8 3.9 83 377-478 32-115 (119)
77 2ko5_A Ring finger protein Z; 92.1 0.1 3.5E-06 43.3 3.4 53 99-154 21-73 (99)
78 3rui_B Autophagy-related prote 91.9 0.16 5.4E-06 44.0 4.6 84 377-478 31-114 (118)
79 4fo9_A E3 SUMO-protein ligase 91.0 0.14 4.8E-06 52.3 3.9 65 104-170 213-281 (360)
80 3m95_A Autophagy related prote 90.5 0.23 8E-06 43.4 4.3 83 377-478 37-120 (125)
81 2r2q_A Gamma-aminobutyric acid 90.1 0.26 9E-06 42.0 4.3 82 377-476 28-109 (110)
82 2cs3_A Protein C14ORF4, MY039 89.6 0.18 6.1E-06 40.7 2.6 43 105-148 14-64 (93)
83 2zjd_A Microtubule-associated 89.2 0.3 1E-05 43.0 4.0 84 377-478 36-121 (130)
84 1eo6_A GATE-16, golgi-associat 88.9 0.32 1.1E-05 41.9 3.9 84 377-478 29-112 (117)
85 1wz3_A Autophagy 12B, ATG12B, 88.4 0.3 1E-05 40.7 3.2 79 377-478 14-92 (96)
86 1weo_A Cellulose synthase, cat 85.4 0.7 2.4E-05 37.9 3.7 49 106-154 16-70 (93)
87 3gs2_A E3 ubiquitin-protein li 83.8 0.11 3.9E-06 43.9 -1.7 80 393-478 22-110 (111)
88 4gdk_A Ubiquitin-like protein 80.6 0.96 3.3E-05 37.3 2.8 73 387-478 14-87 (91)
89 1z60_A TFIIH basal transcripti 77.8 1.4 4.6E-05 33.5 2.7 41 107-148 16-58 (59)
90 1joc_A EEA1, early endosomal a 64.5 24 0.00083 30.2 8.0 33 106-138 69-104 (125)
91 2lri_C Autoimmune regulator; Z 64.1 7.9 0.00027 29.7 4.3 46 106-152 12-60 (66)
92 3w1s_C Ubiquitin-like protein 63.6 5.7 0.00019 32.6 3.6 78 377-477 9-86 (91)
93 2zet_C Melanophilin; complex, 62.6 11 0.00038 33.7 5.6 44 106-150 68-116 (153)
94 2ct7_A Ring finger protein 31; 61.1 1.9 6.6E-05 34.7 0.3 30 108-137 27-61 (86)
95 2gmg_A Hypothetical protein PF 60.5 3.4 0.00012 34.9 1.7 33 114-152 62-94 (105)
96 2jmo_A Parkin; IBR, E3 ligase, 58.8 2.6 8.9E-05 33.5 0.7 33 106-138 25-69 (80)
97 1wd2_A Ariadne-1 protein homol 58.6 2.7 9.3E-05 31.8 0.7 34 107-140 7-47 (60)
98 1zbd_B Rabphilin-3A; G protein 58.3 23 0.0008 30.9 6.8 45 106-150 55-106 (134)
99 1y02_A CARP2, FYVE-ring finger 51.9 3.1 0.00011 35.9 0.0 47 105-152 18-67 (120)
100 4g9i_A Hydrogenase maturation 50.7 5.4 0.00018 44.7 1.7 51 104-154 104-190 (772)
101 1wil_A KIAA1045 protein; ring 49.0 16 0.00055 29.7 3.8 35 103-137 12-47 (89)
102 2l5u_A Chromodomain-helicase-D 48.2 16 0.00056 27.2 3.6 44 106-150 11-57 (61)
103 3ttc_A HYPF, transcriptional r 48.2 6.1 0.00021 43.4 1.6 48 105-152 16-99 (657)
104 3o36_A Transcription intermedi 47.7 8.9 0.0003 34.8 2.4 46 106-152 4-52 (184)
105 1dvp_A HRS, hepatocyte growth 46.8 8.1 0.00028 36.2 2.1 35 104-138 159-196 (220)
106 3vth_A Hydrogenase maturation 46.4 6.7 0.00023 43.9 1.6 50 105-154 110-195 (761)
107 1vfy_A Phosphatidylinositol-3- 44.8 13 0.00044 28.8 2.6 31 107-137 12-45 (73)
108 3n3k_B Ubiquitin; hydrolase, p 44.4 17 0.00058 27.8 3.3 43 379-427 6-48 (85)
109 3zyq_A Hepatocyte growth facto 44.0 11 0.00037 35.7 2.5 34 105-138 163-199 (226)
110 1mm2_A MI2-beta; PHD, zinc fin 44.0 12 0.00041 28.0 2.2 45 106-151 9-56 (61)
111 2xqn_T Testin, TESS; metal-bin 43.7 13 0.00044 31.1 2.7 47 105-154 29-75 (126)
112 2yt5_A Metal-response element- 43.7 6.9 0.00024 29.5 0.9 48 106-153 6-63 (66)
113 3u5n_A E3 ubiquitin-protein li 42.4 11 0.00038 35.0 2.2 45 107-152 8-55 (207)
114 2k16_A Transcription initiatio 42.3 14 0.00047 28.5 2.5 50 105-154 17-71 (75)
115 3mpx_A FYVE, rhogef and PH dom 42.3 5.3 0.00018 40.8 0.0 33 106-138 375-410 (434)
116 3mtn_B UBA80, ubcep1, ubiquiti 42.2 21 0.00071 27.3 3.5 44 378-427 5-48 (85)
117 3mjh_B Early endosome antigen 41.6 5.5 0.00019 26.8 0.0 16 106-121 5-20 (34)
118 2cup_A Skeletal muscle LIM-pro 41.4 12 0.00041 30.0 2.1 47 105-154 32-78 (101)
119 3t7l_A Zinc finger FYVE domain 40.9 13 0.00045 30.0 2.2 33 106-138 20-55 (90)
120 3a9j_A Ubiquitin; protein comp 40.7 30 0.001 25.6 4.2 32 396-427 14-45 (76)
121 2o35_A Hypothetical protein DU 40.5 8.4 0.00029 32.2 0.9 12 128-139 42-53 (105)
122 2yw8_A RUN and FYVE domain-con 40.5 13 0.00045 29.4 2.1 33 106-138 19-54 (82)
123 3fyb_A Protein of unknown func 40.3 8.5 0.00029 32.1 0.9 12 128-139 41-52 (104)
124 1z2q_A LM5-1; membrane protein 40.2 14 0.00047 29.4 2.2 34 105-138 20-56 (84)
125 1wfk_A Zinc finger, FYVE domai 37.4 14 0.00048 29.8 1.8 33 106-138 9-44 (88)
126 1m3v_A FLIN4, fusion of the LI 36.7 20 0.00067 30.1 2.7 47 106-154 32-81 (122)
127 2lbm_A Transcriptional regulat 36.5 25 0.00084 31.1 3.4 44 106-150 63-116 (142)
128 1x4u_A Zinc finger, FYVE domai 35.4 17 0.0006 28.8 2.1 32 106-137 14-48 (84)
129 2jne_A Hypothetical protein YF 34.7 5.9 0.0002 33.0 -0.8 42 106-154 32-73 (101)
130 2fiy_A Protein FDHE homolog; F 34.7 8.8 0.0003 38.3 0.2 47 104-151 180-231 (309)
131 1ndd_A NEDD8, protein (ubiquit 34.7 40 0.0014 24.8 4.0 43 379-427 3-45 (76)
132 1fp0_A KAP-1 corepressor; PHD 34.3 27 0.00092 28.4 3.0 46 105-151 24-72 (88)
133 1f62_A Transcription factor WS 33.8 36 0.0012 24.1 3.4 43 108-150 2-49 (51)
134 1we9_A PHD finger family prote 32.3 14 0.00049 27.5 1.0 47 105-151 5-58 (64)
135 2dzi_A Ubiquitin-like protein 32.1 52 0.0018 24.7 4.3 46 374-427 7-52 (81)
136 2bwf_A Ubiquitin-like protein 31.7 39 0.0013 25.2 3.5 44 377-427 5-48 (77)
137 3k9o_B Ubiquitin, UBB+1; E2-25 31.6 42 0.0014 26.4 3.8 44 378-427 3-46 (96)
138 1wh3_A 59 kDa 2'-5'-oligoadeny 30.9 52 0.0018 25.3 4.2 45 377-427 8-52 (87)
139 1sif_A Ubiquitin; hydrophobic 30.3 42 0.0014 26.3 3.6 44 378-427 11-54 (88)
140 1xwh_A Autoimmune regulator; P 30.3 15 0.00052 27.8 0.9 46 105-151 7-55 (66)
141 2l43_A N-teminal domain from h 30.1 26 0.00089 28.2 2.3 50 104-153 23-77 (88)
142 2yql_A PHD finger protein 21A; 29.9 12 0.00041 27.4 0.2 44 106-150 9-55 (56)
143 2puy_A PHD finger protein 21A; 29.9 18 0.00062 26.7 1.2 46 106-152 5-53 (60)
144 2ysm_A Myeloid/lymphoid or mix 29.7 29 0.00098 28.7 2.6 45 105-149 6-55 (111)
145 2ro1_A Transcription intermedi 28.7 23 0.0008 32.4 2.0 45 107-152 3-50 (189)
146 3v43_A Histone acetyltransfera 28.6 51 0.0017 27.4 4.0 44 106-149 5-62 (112)
147 3dbh_I NEDD8; cell cycle, acti 27.4 44 0.0015 25.6 3.2 45 377-427 13-57 (88)
148 2rgt_A Fusion of LIM/homeobox 26.9 46 0.0016 29.4 3.6 46 105-154 32-77 (169)
149 1wev_A Riken cDNA 1110020M19; 26.0 19 0.00064 29.0 0.7 49 106-154 16-75 (88)
150 3vdz_A Ubiquitin-40S ribosomal 26.0 57 0.002 26.8 3.8 45 377-427 36-80 (111)
151 3phx_B Ubiquitin-like protein 26.0 61 0.0021 24.4 3.7 48 372-427 2-49 (79)
152 1yx5_B Ubiquitin; proteasome, 25.9 78 0.0027 25.0 4.5 42 380-427 4-45 (98)
153 2jtn_A LIM domain-binding prot 25.3 38 0.0013 30.3 2.7 46 105-154 86-131 (182)
154 2d8v_A Zinc finger FYVE domain 25.1 27 0.00093 27.0 1.4 31 106-138 8-39 (67)
155 1rut_X Flinc4, fusion protein 24.6 26 0.00089 31.6 1.5 48 105-154 31-81 (188)
156 4eew_A Large proline-rich prot 24.4 64 0.0022 24.8 3.7 47 373-427 16-62 (88)
157 4hcn_B Polyubiquitin, ubiquiti 24.4 60 0.0021 25.9 3.5 48 372-427 20-67 (98)
158 4fbj_B NEDD8; effector-HOST ta 24.3 62 0.0021 25.3 3.5 43 379-427 3-45 (88)
159 3lqh_A Histone-lysine N-methyl 24.3 31 0.0011 31.6 2.0 46 107-152 3-64 (183)
160 3v6c_B Ubiquitin; structural g 24.1 70 0.0024 25.0 3.8 45 377-427 18-62 (91)
161 3ql9_A Transcriptional regulat 23.5 70 0.0024 27.7 4.0 44 106-150 57-110 (129)
162 2hj8_A Interferon-induced 17 k 23.4 83 0.0028 24.4 4.2 48 372-427 2-49 (88)
163 4dwf_A HLA-B-associated transc 22.7 72 0.0024 24.7 3.6 46 374-427 5-50 (90)
164 2uyz_B Small ubiquitin-related 22.6 61 0.0021 24.4 3.1 45 377-427 4-48 (79)
165 1l8d_A DNA double-strand break 22.4 1.3E+02 0.0044 24.5 5.4 11 143-153 48-58 (112)
166 2xjy_A Rhombotin-2; oncoprotei 21.8 43 0.0015 27.9 2.3 48 105-154 28-78 (131)
167 2ku3_A Bromodomain-containing 21.7 45 0.0015 25.7 2.1 48 104-151 14-66 (71)
168 2jrp_A Putative cytoplasmic pr 21.5 15 0.0005 29.6 -0.8 11 107-117 3-13 (81)
169 1js8_A Hemocyanin; glycoprotei 21.5 40 0.0014 34.4 2.4 43 357-401 345-389 (394)
170 3ask_A E3 ubiquitin-protein li 21.3 31 0.0011 32.8 1.3 44 107-150 175-224 (226)
171 1wyw_B Ubiquitin-like protein 21.0 74 0.0025 25.4 3.5 45 377-427 22-66 (97)
172 2e6s_A E3 ubiquitin-protein li 20.9 42 0.0014 26.4 1.8 43 108-150 28-76 (77)
173 2wyq_A HHR23A, UV excision rep 20.9 1.2E+02 0.0041 22.9 4.6 45 377-427 6-53 (85)
174 2e6r_A Jumonji/ARID domain-con 20.6 24 0.00082 28.6 0.3 47 105-151 15-66 (92)
175 2ojr_A Ubiquitin; lanthide-bin 20.5 95 0.0032 25.4 4.1 45 377-427 36-80 (111)
176 2lv9_A Histone-lysine N-methyl 20.2 47 0.0016 27.1 2.1 43 107-150 29-75 (98)
177 2kwj_A Zinc finger protein DPF 20.1 41 0.0014 28.2 1.7 42 108-149 3-59 (114)
No 1
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.50 E-value=8.2e-15 Score=128.37 Aligned_cols=75 Identities=25% Similarity=0.661 Sum_probs=66.6
Q ss_pred cccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhcchh
Q 011622 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI 175 (481)
Q Consensus 100 ~~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~~ 175 (481)
...+.+.+.|+||+++|.+|++ ++|||+||..||..|+......||.||..+.....+.+|..+.+++..++|..
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPIT-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY 120 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred HHhCccCCCCCcCChHHcCcEE-eeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence 3456678899999999999998 89999999999999998555699999999987678999999999999998864
No 2
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.49 E-value=7.9e-15 Score=127.43 Aligned_cols=91 Identities=21% Similarity=0.523 Sum_probs=60.9
Q ss_pred ccccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhcc-----
Q 011622 99 ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP----- 173 (481)
Q Consensus 99 ~~~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p----- 173 (481)
.+..+.+.+.|+||+++|.+|+++.+|||+||..||..|+. ..||.||..+.. ..+.+|..+.+++..+..
T Consensus 15 ~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~-~~~~~n~~l~~l~~~~~~~~~~~ 90 (117)
T 1jm7_B 15 ALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI-QDLKINRQLDSMIQLCSKLRNLL 90 (117)
T ss_dssp HHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC-SSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc-ccccccHHHHHHHHHHHHHHHHH
Confidence 44556788999999999999998339999999999999997 789999999965 678999999999865532
Q ss_pred ------hhhhhhHHHHhccHHHHHHH
Q 011622 174 ------DIDKYEEEELAFHEEERTRN 193 (481)
Q Consensus 174 ------~~~~~ee~l~~fceeek~~~ 193 (481)
.|..|.+.+.+||+++...+
T Consensus 91 ~~~~~~~c~~h~~~~~lfc~~~~k~~ 116 (117)
T 1jm7_B 91 HDNELSDLKEDKPRKSLFNDAGNKKG 116 (117)
T ss_dssp HCCCCCC-------------------
T ss_pred hhccccccccccccCccceecccccC
Confidence 36777788899999887543
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.48 E-value=1.8e-14 Score=115.79 Aligned_cols=68 Identities=21% Similarity=0.382 Sum_probs=60.3
Q ss_pred ccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhc
Q 011622 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (481)
Q Consensus 103 l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (481)
+.+.+.||||+++|.+|++ ++|||+||..||..|+..+...||.||..+.. ..+.+|..|.++|..+.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~-~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLH-AGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS-CCCEECTTTHHHHHHHH
T ss_pred CcccCCCCCccccccCCEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh-hhCccCHHHHHHHHHHH
Confidence 4668999999999999997 89999999999999998657899999999986 56889999999987654
No 4
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.47 E-value=2.1e-14 Score=131.78 Aligned_cols=78 Identities=53% Similarity=1.074 Sum_probs=64.4
Q ss_pred ccccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhcchhh
Q 011622 99 ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDID 176 (481)
Q Consensus 99 ~~~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~~~ 176 (481)
....+...+.|+||++.|.+|+++++|||+||..||..|+..+...||.||..+.....+.+|..|.++|..+++...
T Consensus 47 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~~ 124 (165)
T 2ckl_B 47 SPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRD 124 (165)
T ss_dssp ---CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC----
T ss_pred chhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcchh
Confidence 344566788999999999999985699999999999999996578999999999776789999999999999888543
No 5
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.46 E-value=3.8e-14 Score=117.38 Aligned_cols=71 Identities=21% Similarity=0.534 Sum_probs=60.5
Q ss_pred cccCcccccccccccccceeccc-CCCcccHHHHhhhhhc-CCCCCCCccccccCCCCCCCChhhhHHHHhhcc
Q 011622 102 EIRKDVQCPICLGIIKKTRTVME-CLHRFCRECIDKSMRL-GNNECPACRTHCASRRSLRDDPNYDALISALYP 173 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~Pv~i~~-CgH~FC~~CI~~~l~~-~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p 173 (481)
.+.+.+.|+||+++|.+|++ ++ |||+||..||..|+.. +...||.||..+.....+.+|..+.+++..+..
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp CCCTTTEETTTTEECSSCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred cCCcCCCCCCCChhhcCceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 35678999999999999997 78 9999999999999973 346999999998655778999999998876643
No 6
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.44 E-value=3e-13 Score=120.83 Aligned_cols=64 Identities=31% Similarity=0.643 Sum_probs=52.1
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhcc
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP 173 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p 173 (481)
+++.|+||++.|.+|++ ++|||+||..||..|+. ....||.||.++.. ...+..+..++..++.
T Consensus 52 ~~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~---~~~~~~~~~~i~~~~~ 115 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVT-LNCAHSFCSYCINEWMK-RKIECPICRKDIKS---KTYSLVLDNCINKMVN 115 (138)
T ss_dssp HHSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCC---EEECHHHHHHHHHHHT
T ss_pred ccCCCcccCcccCCceE-CCCCCCccHHHHHHHHH-cCCcCCCCCCcCCC---CCCccchhHHHHHHHH
Confidence 45689999999999997 89999999999999998 56889999998865 3345566666655443
No 7
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.42 E-value=8.4e-14 Score=119.02 Aligned_cols=78 Identities=27% Similarity=0.724 Sum_probs=66.0
Q ss_pred cccccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCC---CCCCChhhhHHHHhhcch
Q 011622 98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRR---SLRDDPNYDALISALYPD 174 (481)
Q Consensus 98 ~~~~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~---~l~~n~~L~~li~~l~p~ 174 (481)
..+..+.+.+.|+||++.|.+|+++++|||+||..||..|+. ....||.||..+.... .+.+|..+.+++..+.+.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~ 85 (108)
T 2ckl_A 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG 85 (108)
T ss_dssp EEHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT-SCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT
T ss_pred cchhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHH-hCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhh
Confidence 344567789999999999999998559999999999999998 4589999999988632 577899999999888886
Q ss_pred hh
Q 011622 175 ID 176 (481)
Q Consensus 175 ~~ 176 (481)
..
T Consensus 86 ~~ 87 (108)
T 2ckl_A 86 LF 87 (108)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 8
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.42 E-value=8.8e-14 Score=114.66 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=59.6
Q ss_pred ccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhc
Q 011622 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (481)
Q Consensus 103 l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (481)
+.+.+.||||+++|.+||+ ++|||+||+.||..||. ...+||.|+.++.. ..+.+|..|.++|..+.
T Consensus 11 ~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~-~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVR-LPSGTVMDRSIILRHLL-NSPTDPFNRQMLTE-SMLEPVPELKEQIQAWM 77 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred CchheECcccCchhcCCeE-CCCCCEECHHHHHHHHh-cCCCCCCCcCCCCh-HhcchHHHHHHHHHHHH
Confidence 4568999999999999997 88999999999999998 46899999999987 57899999998886554
No 9
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.41 E-value=7.1e-14 Score=127.08 Aligned_cols=73 Identities=22% Similarity=0.640 Sum_probs=64.8
Q ss_pred ccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhcch
Q 011622 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPD 174 (481)
Q Consensus 101 ~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~ 174 (481)
..+.+.+.|+||+++|.+|++ ++|||+||..||..|+......||.||..+.....+.+|..+.+++..++|.
T Consensus 73 ~~l~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHHHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred HhCccCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 345667899999999999998 8999999999999999865568999999998855799999999999988875
No 10
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.41 E-value=5e-14 Score=119.21 Aligned_cols=74 Identities=22% Similarity=0.445 Sum_probs=61.7
Q ss_pred ccccccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhh
Q 011622 97 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISAL 171 (481)
Q Consensus 97 ~~~~~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l 171 (481)
......+.+.+.|+||+++|.+|+++++|||+||..||..|+......||.||..+.. ..+..+..+..++..+
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 13 EQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL-RELVNCRWAEEVTQQL 86 (100)
T ss_dssp HHHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG-GGCEECTTHHHHHHHH
T ss_pred ccccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH-HHhHhhHHHHHHHHHH
Confidence 3445567889999999999999997799999999999999999554799999999976 6677787777776443
No 11
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.40 E-value=1.7e-13 Score=116.47 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=60.7
Q ss_pred cccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhc
Q 011622 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (481)
.+.+.+.||||+++|.+||+ ++|||+||+.||..||. ...+||.|+.++.. ..+.+|..|.++|..+.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVR-LPSGTIMDRSIILRHLL-NSPTDPFNRQTLTE-SMLEPVPELKEQIQAWM 92 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEE-ETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCT-TSSEECHHHHHHHHHHH
T ss_pred cCcHhhCCcCccCcccCCeE-CCCCCEEchHHHHHHHH-cCCCCCCCCCCCCh-hhceECHHHHHHHHHHH
Confidence 34668999999999999997 88999999999999998 56899999999987 67999999999987654
No 12
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.39 E-value=4.1e-13 Score=113.75 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=60.2
Q ss_pred cccCcccccccccccccceecccCC-CcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhc
Q 011622 102 EIRKDVQCPICLGIIKKTRTVMECL-HRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~Pv~i~~Cg-H~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (481)
.+.+.+.||||+++|.+||+ ++|| |+||+.||..||.. ..+||+|+.++.. ..+.+|..|.++|..+.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~-~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVV-LPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM-DQIRPNTELKEKIQRWL 86 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT-TTSEECHHHHHHHHHHH
T ss_pred cCcHhcCCcCccccccCCeE-CCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh-hhceEcHHHHHHHHHHH
Confidence 34678999999999999997 8999 99999999999984 5799999999987 67899999999886654
No 13
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.39 E-value=1.5e-13 Score=115.53 Aligned_cols=71 Identities=24% Similarity=0.613 Sum_probs=60.9
Q ss_pred cccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhc
Q 011622 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (481)
Q Consensus 100 ~~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (481)
...+.+.+.|+||++.|.+|+++++|||+||..||..|+. ....||.||..+.. ..+.+|..+.+++..+.
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~-~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE-PDLKNNRILDELVKSLN 86 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh-hhCCcCHHHHHHHHHHH
Confidence 4455678899999999999998559999999999999998 45899999999886 66888999998886554
No 14
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.38 E-value=8.8e-14 Score=111.61 Aligned_cols=65 Identities=26% Similarity=0.770 Sum_probs=55.4
Q ss_pred cccCcccccccccccccceecccCCCcccHHHHhhhhhcC------CCCCCCccccccCCCCCCCChhhhHHH
Q 011622 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG------NNECPACRTHCASRRSLRDDPNYDALI 168 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~------~~~CP~CR~~~~~~~~l~~n~~L~~li 168 (481)
.+.+.+.|+||++.|.+|++ ++|||+||..||..|+... ...||.||..+.. ..+.+|..|.+++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~-~~l~~n~~l~~lv 78 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF-EHLQANQHLANIV 78 (79)
T ss_dssp CCCCCCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS-SGGGTCSSSCCCC
T ss_pred hcccCCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH-hhCCcCHHHHHhh
Confidence 45678899999999999997 8999999999999999842 5789999999986 5678888776554
No 15
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.35 E-value=2.5e-13 Score=117.18 Aligned_cols=72 Identities=28% Similarity=0.622 Sum_probs=59.8
Q ss_pred cccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC------CCCCCCChhhhHHHHhhcch
Q 011622 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS------RRSLRDDPNYDALISALYPD 174 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~------~~~l~~n~~L~~li~~l~p~ 174 (481)
.+.+.+.|+||+++|.+|++ ++|||+||..||..|+..+...||.||..+.. ...+..|..+..++..++|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR 88 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEE-CTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred CCCCCCCCccCCcccCceeE-cCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence 34567899999999999998 79999999999999998657899999998864 24566777777777776653
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=4.6e-13 Score=108.29 Aligned_cols=66 Identities=32% Similarity=0.818 Sum_probs=55.7
Q ss_pred ccccCcccccccccccccceecccCCCcccHHHHhhhhhc-----CCCCCCCccccccCCCCCCCChhhhHHH
Q 011622 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-----GNNECPACRTHCASRRSLRDDPNYDALI 168 (481)
Q Consensus 101 ~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~-----~~~~CP~CR~~~~~~~~l~~n~~L~~li 168 (481)
..+.+.+.|+||++.+.+|+. ++|||+||..||..|+.. +...||.||..+.. ..+.+|..+.+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~~v 84 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF-GNLKPNLHVANIV 84 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT-TCCEECSCCCSSC
T ss_pred HhCccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH-HhCCcCHHHHHhh
Confidence 445678899999999999997 899999999999999985 26799999999886 5677787776554
No 17
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.33 E-value=5.4e-13 Score=115.94 Aligned_cols=77 Identities=29% Similarity=0.499 Sum_probs=64.4
Q ss_pred ccccccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhcchh
Q 011622 97 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI 175 (481)
Q Consensus 97 ~~~~~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~~ 175 (481)
...+..+.+.+.|+||++++.+|++ ++|||+||..||..|+......||.||..+.. ..+.++..+..++..+...|
T Consensus 9 ~~~~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~i~~l~v~C 85 (118)
T 3hct_A 9 VEFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-NQLFPDNFAKREILSLMVKC 85 (118)
T ss_dssp SCBSSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-GGCEECHHHHHHHHTSEEEC
T ss_pred hhhccCCCCCCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH-HhcccCHHHHHHHccceeEC
Confidence 3355667888999999999999997 89999999999999998555599999999987 55778888888887766544
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=9.7e-13 Score=104.33 Aligned_cols=53 Identities=34% Similarity=0.830 Sum_probs=47.2
Q ss_pred ccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 101 ~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
..+.+.+.|+||++.|.+|+++++|||+||..||..|+. ....||.||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFY-YSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHH-HCSSCTTTCCCCCS
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHH-cCCcCCCcCcccCc
Confidence 445678899999999999998669999999999999998 45899999999876
No 19
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=5.6e-13 Score=107.78 Aligned_cols=66 Identities=26% Similarity=0.842 Sum_probs=56.0
Q ss_pred ccccCcccccccccccccceecccCCCcccHHHHhhhhhc-----CCCCCCCccccccCCCCCCCChhhhHHH
Q 011622 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-----GNNECPACRTHCASRRSLRDDPNYDALI 168 (481)
Q Consensus 101 ~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~-----~~~~CP~CR~~~~~~~~l~~n~~L~~li 168 (481)
..+.+.+.|+||++.+.+|+. ++|||+||..||..|+.. +...||.||..+.. ..+.+|..+.+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~~v 84 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP-ENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS-SSCCCSCCCCCCC
T ss_pred HHccCCCCCCCCCcccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH-HhcCccHHHHHhh
Confidence 345678899999999999997 899999999999999974 26799999999986 6678888776654
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.29 E-value=1.7e-12 Score=103.63 Aligned_cols=56 Identities=27% Similarity=0.695 Sum_probs=46.6
Q ss_pred cccCcccccccccccccceeccc-CCCcccHHHHhhhhhc-CCCCCCCccccccCCCCC
Q 011622 102 EIRKDVQCPICLGIIKKTRTVME-CLHRFCRECIDKSMRL-GNNECPACRTHCASRRSL 158 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~Pv~i~~-CgH~FC~~CI~~~l~~-~~~~CP~CR~~~~~~~~l 158 (481)
.+.+.+.|+||++.|.+|++ ++ |||+||..||..|+.. +...||.||..+...+.+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred cCCCCCCCcCCChHHhCCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 35678899999999999998 78 9999999999999983 336899999976553333
No 21
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.29 E-value=1.2e-12 Score=128.08 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=59.9
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhcc
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP 173 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p 173 (481)
...+.||||+++|.+||+ ++|||+||..||..|+..+..+||+|+.++.. ..+.+|..|..+|..+..
T Consensus 206 ~~~~~c~i~~~~~~dPv~-~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~-~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ-EQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CSTTBCTTTCSBCSSEEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG-GGCEECHHHHHHHHHHHT
T ss_pred CcccCCcCcCCHhcCCeE-CCCCCEECHHHHHHHHHHCCCCCcCCCCCCch-hcCcccHHHHHHHHHHHH
Confidence 457899999999999997 89999999999999998555569999999976 679999999999976653
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=105.45 Aligned_cols=60 Identities=20% Similarity=0.453 Sum_probs=49.4
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHH
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDAL 167 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~l 167 (481)
...+.|+||++.|.+|+. ++|||+||..||..|+. ....||+||..+. ..+.++..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~--~~~~~~~~l~~~ 72 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFR-ATPRCYICDQPTG--GIFNPAKELMAK 72 (81)
T ss_dssp CCCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC--SCCEECHHHHHH
T ss_pred CCCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHH-CCCcCCCcCcccc--ccCCcHHHHHHH
Confidence 446799999999999997 99999999999999998 4689999999886 445566444333
No 23
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=7.8e-13 Score=112.98 Aligned_cols=72 Identities=31% Similarity=0.730 Sum_probs=59.8
Q ss_pred ccccCcccccccccccccceecccCCCcccHHHHhhhhhcC--CCCCCCccccccCCCCCCCChhhhHHHHhhcch
Q 011622 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG--NNECPACRTHCASRRSLRDDPNYDALISALYPD 174 (481)
Q Consensus 101 ~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~--~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~ 174 (481)
..+...+.|+||++.+.+|++ ++|||+||..||..|+... ...||.||..+.. ..+.++..+.+++..+...
T Consensus 16 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 16 NAMQKILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK-RSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHHHHTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT-TTCBCCCSSSHHHHHHHHH
T ss_pred HhccCCCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH-hhcCccHHHHHHHHHHHHH
Confidence 345667899999999999997 8999999999999999843 2589999999987 6688888888887666543
No 24
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=109.17 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=57.8
Q ss_pred ccCcccccccccccccceecc-cCCCcccHHHHhhhhhcC-----CCCCCC--cccc-ccCCCCCCCChhhhHHHHhhcc
Q 011622 103 IRKDVQCPICLGIIKKTRTVM-ECLHRFCRECIDKSMRLG-----NNECPA--CRTH-CASRRSLRDDPNYDALISALYP 173 (481)
Q Consensus 103 l~~~l~CpICl~~l~~Pv~i~-~CgH~FC~~CI~~~l~~~-----~~~CP~--CR~~-~~~~~~l~~n~~L~~li~~l~p 173 (481)
....+.||||+++|.+||+ + .|||+||..||..||..+ ...||+ |+.. +.. ..+.+|..|..+|..+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~-~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~-~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVK-NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK-SDLIQDEALRRAIENHNK 81 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEE-ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG-GGEEECHHHHHHHHHHHT
T ss_pred CCcEeECcCcCchhcCCEE-cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH-hhCcCCHHHHHHHHHHHH
Confidence 3567899999999999998 6 499999999999999842 468999 9877 554 678999999999876643
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.1e-12 Score=100.59 Aligned_cols=52 Identities=23% Similarity=0.666 Sum_probs=46.3
Q ss_pred cccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.+.+.+.|+||++.+.+|+. ++|||+||..||..|+......||.||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 45668899999999999997 89999999999999996466789999998875
No 26
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.25 E-value=3.1e-12 Score=119.59 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=61.0
Q ss_pred ccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhc
Q 011622 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (481)
Q Consensus 101 ~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (481)
..+...+.||||+++|.+||+ ++|||+||+.||..||..+..+||.|+.++.. ..+.+|..|.++|..+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~-~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~-~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ-DQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeE-CCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh-hhCcchHHHHHHHHHHH
Confidence 345678999999999999997 89999999999999998543479999999987 57999999999987654
No 27
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.24 E-value=2.1e-12 Score=116.23 Aligned_cols=83 Identities=19% Similarity=0.417 Sum_probs=62.2
Q ss_pred CCcccc-cccccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCC--------CCCCCCh
Q 011622 92 KPEFVF-VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR--------RSLRDDP 162 (481)
Q Consensus 92 ~~e~~~-~~~~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~--------~~l~~n~ 162 (481)
.+++.. .....+.+.+.|+||+++|.+|++ ++|||+||..||..|+..+...||.||..+... ..+.++.
T Consensus 16 ~~g~~~~~~~~~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~ 94 (141)
T 3knv_A 16 QPGFSKTLLGTKLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDN 94 (141)
T ss_dssp CCSBCGGGTGGGCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECH
T ss_pred CCCcchhhhhccCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccH
Confidence 344433 344678889999999999999998 899999999999999986656999999975321 2344666
Q ss_pred hhhHHHHhhcchh
Q 011622 163 NYDALISALYPDI 175 (481)
Q Consensus 163 ~L~~li~~l~p~~ 175 (481)
.+...|..+...|
T Consensus 95 ~~~~~i~~L~v~C 107 (141)
T 3knv_A 95 AARREVESLPAVC 107 (141)
T ss_dssp HHHHHHHTSEEEC
T ss_pred HHHHHHccccccc
Confidence 6666666655444
No 28
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=8.6e-12 Score=98.53 Aligned_cols=53 Identities=38% Similarity=0.900 Sum_probs=46.3
Q ss_pred ccccCcccccccccccccceecccCCCcccHHHHhhhhhc--CCCCCCCccccccC
Q 011622 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCAS 154 (481)
Q Consensus 101 ~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~--~~~~CP~CR~~~~~ 154 (481)
..+.+.+.|+||++.+.+|++ ++|||+||..||..|+.. ....||.||..+..
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345678899999999999998 799999999999999972 45689999998875
No 29
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.23 E-value=2.9e-12 Score=110.68 Aligned_cols=73 Identities=25% Similarity=0.584 Sum_probs=59.6
Q ss_pred cccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhcchh
Q 011622 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI 175 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~~ 175 (481)
.+.+.+.|+||++.+.+|+. ++|||+||..||..|+......||.||..+.......++..+..++..+...|
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C 91 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKC 91 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEEC
T ss_pred hccCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCC
Confidence 45668899999999999998 89999999999999998656799999999987554556666777776655444
No 30
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.21 E-value=5.2e-12 Score=116.21 Aligned_cols=80 Identities=28% Similarity=0.486 Sum_probs=65.4
Q ss_pred cccccccccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhcc
Q 011622 94 EFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP 173 (481)
Q Consensus 94 e~~~~~~~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p 173 (481)
++....+..+.+.+.|+||+++|.+|++ ++|||+||..||..|+..+...||.||..+.. ..+.++..+..+|..+..
T Consensus 6 g~~~~~~~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~~~~~i~~l~v 83 (170)
T 3hcs_A 6 GYDVEFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-NQLFPDNFAKREILSLMV 83 (170)
T ss_dssp CBCSEESSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-GGCEECHHHHHHHHTSEE
T ss_pred CCChhhccCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcch-hhhhhhHHHHHHHhhccc
Confidence 3444456678889999999999999998 89999999999999998555699999999887 456677778888777654
Q ss_pred hh
Q 011622 174 DI 175 (481)
Q Consensus 174 ~~ 175 (481)
.|
T Consensus 84 ~C 85 (170)
T 3hcs_A 84 KC 85 (170)
T ss_dssp EC
T ss_pred CC
Confidence 33
No 31
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.3e-11 Score=100.81 Aligned_cols=52 Identities=27% Similarity=0.790 Sum_probs=45.4
Q ss_pred cccCccccccccccccc----ceecccCCCcccHHHHhhhhhcC--CCCCCCccccccC
Q 011622 102 EIRKDVQCPICLGIIKK----TRTVMECLHRFCRECIDKSMRLG--NNECPACRTHCAS 154 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~----Pv~i~~CgH~FC~~CI~~~l~~~--~~~CP~CR~~~~~ 154 (481)
.+.+.+.|+||++.|.+ |+. ++|||+||..||..|+... ...||.||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKL-LHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEE-CSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEE-CCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 45678899999999998 886 8999999999999999843 4789999998865
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.5e-11 Score=94.65 Aligned_cols=47 Identities=40% Similarity=0.983 Sum_probs=41.5
Q ss_pred ccccCcccccccccccccceecccCCCcccHHHHhhhhhc--CCCCCCCc
Q 011622 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPAC 148 (481)
Q Consensus 101 ~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~--~~~~CP~C 148 (481)
..+.+.+.|+||++.+.+|+. ++|||+||..||..|+.. ....||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEE-CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEE-eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 446778999999999999997 799999999999999983 45689998
No 33
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.16 E-value=1.4e-11 Score=96.73 Aligned_cols=49 Identities=35% Similarity=0.883 Sum_probs=43.4
Q ss_pred cCcccccccccccccc-------eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 104 RKDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 104 ~~~l~CpICl~~l~~P-------v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.+.+.|+||++.+.+| +. ++|||+||..||..|+. ....||.||..+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLK-NANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEE-CTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEe-CCCCChHhHHHHHHHHH-cCCCCCCCCCccCh
Confidence 4567899999999988 54 99999999999999998 44799999999886
No 34
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.7e-11 Score=96.81 Aligned_cols=49 Identities=24% Similarity=0.596 Sum_probs=43.7
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.+.+.|+||++.+.+|+. ++|||.||..||..|+. ....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVS-LPCKHVFCYLCVKGASW-LGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEE-ETTTEEEEHHHHHHCTT-CSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEE-ccCCCHHHHHHHHHHHH-CCCcCcCcCchhCH
Confidence 346789999999999997 89999999999999998 44899999998865
No 35
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.14 E-value=2.1e-11 Score=119.64 Aligned_cols=68 Identities=21% Similarity=0.396 Sum_probs=58.8
Q ss_pred cccCcccccccccccccceecccCCCcccHHHHhhhhhc-CCCCCCC--ccccccCCCCCCCChhhhHHHHh
Q 011622 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPA--CRTHCASRRSLRDDPNYDALISA 170 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~-~~~~CP~--CR~~~~~~~~l~~n~~L~~li~~ 170 (481)
.....+.||||+.+|.+||+++.|||+||+.||..||.. +...||+ |+..+.. ..+.+|..|.+++..
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~-~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM-RDFVRDPIMELRCKI 247 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG-GGEEECHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch-hhCCcCHHHHHHHHH
Confidence 456789999999999999986699999999999999984 3468999 9998876 679999999888743
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=1.5e-11 Score=95.37 Aligned_cols=49 Identities=31% Similarity=0.698 Sum_probs=42.7
Q ss_pred ccccccccc-ccccce---ecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLG-IIKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~-~l~~Pv---~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
++.|+||++ .+.+|+ .+++|||+||..||..|+..+...||.||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 568999999 999984 2489999999999999987566789999999875
No 37
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.9e-11 Score=95.10 Aligned_cols=50 Identities=34% Similarity=0.826 Sum_probs=43.5
Q ss_pred ccCcccccccccccccc-------eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 103 IRKDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 103 l~~~l~CpICl~~l~~P-------v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
+.+.+.|+||++.|.+| +. ++|||.||..||..|+.. ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEE-CSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEe-CCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 45678999999999987 54 999999999999999984 5899999998764
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.3e-11 Score=90.14 Aligned_cols=46 Identities=30% Similarity=0.865 Sum_probs=40.3
Q ss_pred cccCcccccccccccccceecccCCCcccHHHHhhhhhc--CCCCCCCc
Q 011622 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPAC 148 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~--~~~~CP~C 148 (481)
.+.+.+.|+||++.+.+|+. ++|||+||..||..|+.. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVI-IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEe-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35667899999999999997 899999999999999763 56789998
No 39
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.09 E-value=5.8e-11 Score=95.14 Aligned_cols=51 Identities=24% Similarity=0.606 Sum_probs=43.1
Q ss_pred cCcccccccccccccc--eecccCCCcccHHHHhhhhhcCCCCCCCccccccCC
Q 011622 104 RKDVQCPICLGIIKKT--RTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155 (481)
Q Consensus 104 ~~~l~CpICl~~l~~P--v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~ 155 (481)
.....|+||++.|..+ +.+++|+|.||..||..|+. ....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCCc
Confidence 4567899999999865 33479999999999999998 458999999998873
No 40
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.07 E-value=3.1e-11 Score=92.50 Aligned_cols=48 Identities=35% Similarity=0.849 Sum_probs=42.1
Q ss_pred cccccccccccccce------ecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKTR------TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv------~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.+.|+||++.+.+|. .+++|||.||..||..|+.. ...||.||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 568999999999872 34899999999999999984 6899999998876
No 41
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.06 E-value=1.2e-10 Score=94.62 Aligned_cols=53 Identities=26% Similarity=0.629 Sum_probs=43.4
Q ss_pred ccCcccccccccccc--cceeccc--CCCcccHHHHhhhhhcCCCCCCCccccccCCC
Q 011622 103 IRKDVQCPICLGIIK--KTRTVME--CLHRFCRECIDKSMRLGNNECPACRTHCASRR 156 (481)
Q Consensus 103 l~~~l~CpICl~~l~--~Pv~i~~--CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~ 156 (481)
+++++.||||++.+. ++++ ++ |||.||..|+..++......||.||..+....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~-~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINF-FPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTC-CSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccc-cccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 567889999999885 3443 55 99999999999998756789999999988643
No 42
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.06 E-value=4.8e-11 Score=93.03 Aligned_cols=49 Identities=37% Similarity=0.832 Sum_probs=42.8
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
....|+||++.+.+|+.+++|||.||..||..|+. ....||.||..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHh-CcCcCcCCChhhHh
Confidence 35689999999999855699999999999999998 44899999998865
No 43
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=8.4e-11 Score=93.70 Aligned_cols=52 Identities=27% Similarity=0.710 Sum_probs=43.5
Q ss_pred cccCcccccccccccccc--eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 102 EIRKDVQCPICLGIIKKT--RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~P--v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
...+...|+||++.|..+ +..++|+|.||..||..|+.. ...||+||..+..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 345678899999999876 334899999999999999984 5799999998764
No 44
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=5.8e-11 Score=93.18 Aligned_cols=50 Identities=30% Similarity=0.789 Sum_probs=44.2
Q ss_pred cccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 102 ~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.+.+.+.|+||++.+.+ +. ++|||.||..||..|+. ....||.||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LI-LPCAHSFCQKCIDKWSD-RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EE-ETTTEEECHHHHHHSSC-CCSSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcCccC-cc-cCCCCcccHHHHHHHHH-CcCcCCCcCCcccC
Confidence 34567899999999999 64 99999999999999998 66899999998876
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.04 E-value=1.1e-10 Score=87.12 Aligned_cols=48 Identities=31% Similarity=0.803 Sum_probs=40.7
Q ss_pred cCccccccccccccc---ceeccc-CCCcccHHHHhhhhhcCCCCCCCcccccc
Q 011622 104 RKDVQCPICLGIIKK---TRTVME-CLHRFCRECIDKSMRLGNNECPACRTHCA 153 (481)
Q Consensus 104 ~~~l~CpICl~~l~~---Pv~i~~-CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 153 (481)
.+...|+||++.|.. ++. ++ |||.||..||..|+. ....||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~-~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARF-LPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEE-CSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEE-CCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence 456789999999987 565 55 999999999999998 4689999998764
No 46
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=1.6e-10 Score=90.36 Aligned_cols=49 Identities=31% Similarity=0.829 Sum_probs=40.5
Q ss_pred Cccccccccccccc--ceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKK--TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~--Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
....|+||++.|.. ++.+++|||.||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 35689999998852 3445899999999999999984 4789999998865
No 47
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.6e-10 Score=91.69 Aligned_cols=51 Identities=25% Similarity=0.630 Sum_probs=42.7
Q ss_pred ccCccccccccccccccee--cccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 103 IRKDVQCPICLGIIKKTRT--VMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 103 l~~~l~CpICl~~l~~Pv~--i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
+.....|+||++.|..+.. +++|+|.||..||..|+.. ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 4557789999999987643 3599999999999999984 4699999998865
No 48
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.98 E-value=1.7e-10 Score=95.70 Aligned_cols=50 Identities=26% Similarity=0.727 Sum_probs=42.3
Q ss_pred ccCccccccccccccc---ceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 103 IRKDVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 103 l~~~l~CpICl~~l~~---Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
......|+||++.|.. ++. ++|||.||..||..|+. ....||+||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATE-LPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEE-ETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEe-cCCCChHHHHHHHHHHH-cCCcCcCcCccCCC
Confidence 3457789999998876 554 89999999999999998 55799999998764
No 49
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.98 E-value=1.8e-10 Score=85.84 Aligned_cols=47 Identities=32% Similarity=0.766 Sum_probs=39.9
Q ss_pred ccccccccccccc---ceecccCCCcccHHHHhhhhhcCCCCCCCcccccc
Q 011622 106 DVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (481)
Q Consensus 106 ~l~CpICl~~l~~---Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 153 (481)
...|+||++.|.+ ++.+++|+|.||..||..|+... ..||+||..+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 5679999999865 34459999999999999999954 89999999764
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.94 E-value=4.4e-10 Score=96.37 Aligned_cols=50 Identities=24% Similarity=0.605 Sum_probs=41.3
Q ss_pred cccccccccccccce-----------------ecccCCCcccHHHHhhhhh----cCCCCCCCccccccCC
Q 011622 106 DVQCPICLGIIKKTR-----------------TVMECLHRFCRECIDKSMR----LGNNECPACRTHCASR 155 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv-----------------~i~~CgH~FC~~CI~~~l~----~~~~~CP~CR~~~~~~ 155 (481)
+..|+||++.|..|. .+++|+|.||..||..|+. .....||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999997653 1489999999999999995 2457999999988763
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=3e-10 Score=86.00 Aligned_cols=45 Identities=27% Similarity=0.750 Sum_probs=39.7
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
+.+.|+||++.|.+|+. ++|||+||..||..| ...||.||..+..
T Consensus 5 ~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKL-LPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSC-STTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEE-cCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 46789999999999997 999999999999873 3679999998765
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.89 E-value=6.3e-10 Score=96.83 Aligned_cols=49 Identities=35% Similarity=0.883 Sum_probs=43.7
Q ss_pred cCcccccccccccccc-------eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 104 RKDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 104 ~~~l~CpICl~~l~~P-------v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.+.+.|+||++.|.+| +. ++|||+||..||..|+. ....||.||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLK-NANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEE-ETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEe-cCCCChhhHHHHHHHHH-hCCCCCCCCCcCcc
Confidence 3568999999999998 65 99999999999999998 45799999999876
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.89 E-value=3.2e-10 Score=90.63 Aligned_cols=49 Identities=24% Similarity=0.623 Sum_probs=43.1
Q ss_pred cccccCcccccccccccccceecccCCCc-ccHHHHhhhhhcCCCCCCCccccccC
Q 011622 100 LPEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 100 ~~~l~~~l~CpICl~~l~~Pv~i~~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
...+.+.+.|+||++.+.+|++ ++|||. ||..|+..| ..||.||..+..
T Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 18 LRRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEE-ETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred HhcCccCCCCCCCCCCCCCEEE-cCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3445677899999999999997 899999 999999988 679999998875
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.5e-09 Score=88.25 Aligned_cols=49 Identities=27% Similarity=0.543 Sum_probs=40.0
Q ss_pred Cccccccccccccc--------------ceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKK--------------TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~--------------Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
++..|+||++.|.. ++.+++|+|.||..||..|+. ...+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence 35679999998866 445456999999999999999 45799999998754
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.77 E-value=2.5e-09 Score=110.64 Aligned_cols=53 Identities=23% Similarity=0.459 Sum_probs=45.8
Q ss_pred ccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccCCC
Q 011622 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRR 156 (481)
Q Consensus 103 l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~ 156 (481)
......|+||++.+.+|+. ++|||.||..||..|+......||.||..+....
T Consensus 329 ~~~~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred cCCCCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 3445799999999999997 9999999999999999855689999999887643
No 56
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=4.6e-09 Score=83.96 Aligned_cols=48 Identities=23% Similarity=0.609 Sum_probs=41.3
Q ss_pred ccccCcccccccccccccceecccCCCc-ccHHHHhhhhhcCCCCCCCccccccC
Q 011622 101 PEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 101 ~~l~~~l~CpICl~~l~~Pv~i~~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
..+.+.+.|+||++.+.+|++ ++|||. ||..|+..+ ..||.||..+..
T Consensus 20 ~~~~~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 20 RRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred HcCCCCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 345667899999999999997 999999 999999643 679999998875
No 57
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.71 E-value=6.7e-09 Score=89.09 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=41.1
Q ss_pred Ccccccccccccccc-----------------eecccCCCcccHHHHhhhhhcCCCCCCCcccccc
Q 011622 105 KDVQCPICLGIIKKT-----------------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (481)
Q Consensus 105 ~~l~CpICl~~l~~P-----------------v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 153 (481)
....|+||+..|..+ +.+++|+|.||..||..|+. ...+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 457899999998865 45589999999999999998 4689999999764
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.68 E-value=3.3e-09 Score=92.22 Aligned_cols=49 Identities=35% Similarity=0.883 Sum_probs=43.3
Q ss_pred cCcccccccccccccc-------eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 104 RKDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 104 ~~~l~CpICl~~l~~P-------v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.....|+||++.|..| +. ++|||.||..||..|+. ...+||+||..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLK-NANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEE-ETTSBEEEHHHHHHHHH-HCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEe-CCCCChhhHHHHHHHHH-cCCCCCCCCCcCCh
Confidence 4578899999999887 54 89999999999999998 45899999998876
No 59
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.64 E-value=5.2e-09 Score=84.90 Aligned_cols=48 Identities=21% Similarity=0.623 Sum_probs=41.9
Q ss_pred ccccCcccccccccccccceecccCCCc-ccHHHHhhhhhcCCCCCCCccccccC
Q 011622 101 PEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 101 ~~l~~~l~CpICl~~l~~Pv~i~~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
..+.+...|+||++.+.+|++ +||||. ||..|+..|. .||.||..+..
T Consensus 13 ~~l~~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 13 RKLKEAMLCMVCCEEEINSTF-CPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHTBCTTTSSSBCCEEE-ETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred HcCCCCCEeEEeCcccCcEEE-ECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 345667899999999999997 999999 9999998774 79999998876
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.63 E-value=1e-08 Score=79.75 Aligned_cols=48 Identities=29% Similarity=0.521 Sum_probs=41.9
Q ss_pred Ccccccccccccccceecc--cCCCc-ccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKKTRTVM--ECLHR-FCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~--~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
+...|+||++.+.+++. + ||||. ||..|+..|+. ....||.||..+..
T Consensus 7 ~~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCI-VHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEE-EETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEE-ECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhc
Confidence 45689999999999986 5 99999 89999999998 45789999998764
No 61
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.59 E-value=9.9e-09 Score=79.37 Aligned_cols=53 Identities=8% Similarity=0.137 Sum_probs=44.3
Q ss_pred cccccccccccccceecc-cCCCcccHHHHhhhhhcCCCCCCCccccccCCCCCCCC
Q 011622 106 DVQCPICLGIIKKTRTVM-ECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDD 161 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~-~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n 161 (481)
.+.||||++++.+||. + +|||+||+.||.+|+.. ..+||+++.++.. .++.++
T Consensus 3 ~~~CpIs~~~m~dPV~-~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~-~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKVPRRPVL-SPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI-EEIVEI 56 (61)
T ss_dssp -CCCTTTCSCCSSEEE-ETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG-GGCEEC
T ss_pred eEEecCCCCCCCCCEE-eCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh-hhcEEC
Confidence 4789999999999997 6 99999999999999984 3679999999876 334433
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.57 E-value=2.1e-08 Score=77.71 Aligned_cols=47 Identities=17% Similarity=0.456 Sum_probs=40.9
Q ss_pred cccccccccccccceecc--cCCCc-ccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKTRTVM--ECLHR-FCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~--~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
...|+||++.+.+++. + ||||. ||..|+..|+. ....||.||.++..
T Consensus 7 ~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNI-IHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCEEE-EETTEEEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCeEE-EecCCCCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence 4579999999999875 5 99998 99999999987 44789999998864
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.50 E-value=1.4e-08 Score=88.59 Aligned_cols=47 Identities=23% Similarity=0.430 Sum_probs=0.5
Q ss_pred cccccccccccccc-----------------eecccCCCcccHHHHhhhhhcCCCCCCCcccccc
Q 011622 106 DVQCPICLGIIKKT-----------------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153 (481)
Q Consensus 106 ~l~CpICl~~l~~P-----------------v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~ 153 (481)
...|+||++.|..+ +..++|+|.||..||..|+. ...+||+||..+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-cCCcCCCCCCeee
Confidence 46899999998763 33368999999999999998 4689999999764
No 64
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.47 E-value=4e-08 Score=100.54 Aligned_cols=50 Identities=24% Similarity=0.656 Sum_probs=43.8
Q ss_pred ccccccCcccccccccccccceecccCCCc-ccHHHHhhhhhcCCCCCCCccccccC
Q 011622 99 ELPEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 99 ~~~~l~~~l~CpICl~~l~~Pv~i~~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
....+.+.+.|+||++.+.+|++ +||||. ||..|+..| ..||.||.++..
T Consensus 288 ~~~~l~~~~~C~IC~~~~~~~v~-lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 288 QLRRLQEERTCKVCMDKEVSVVF-IPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHHTTCBCTTTSSSBCCEEE-ETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred HHHhCcCCCCCCccCCcCCceEE-cCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 34456778999999999999997 899999 999999987 579999998875
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.39 E-value=9.3e-08 Score=79.41 Aligned_cols=47 Identities=28% Similarity=0.750 Sum_probs=38.7
Q ss_pred Ccccccccccccccceec--ccCCCcccHHHHhhhhhc----C---CCCCCC--cccc
Q 011622 105 KDVQCPICLGIIKKTRTV--MECLHRFCRECIDKSMRL----G---NNECPA--CRTH 151 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i--~~CgH~FC~~CI~~~l~~----~---~~~CP~--CR~~ 151 (481)
..+.|+||++.+..|.++ .+|||.||..||..++.. + ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 367899999999988753 379999999999999862 2 248999 9987
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.5e-07 Score=74.06 Aligned_cols=44 Identities=23% Similarity=0.662 Sum_probs=38.5
Q ss_pred CcccccccccccccceecccCCCc-ccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~-FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
+...|+||++.+.+++. +||||. ||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVL-LPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEE-TTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEE-ECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 35689999999999997 999999 99999984 3679999998875
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=3.4e-07 Score=74.47 Aligned_cols=52 Identities=17% Similarity=0.404 Sum_probs=41.6
Q ss_pred cccccccccccc--cceecccCC-----CcccHHHHhhhhhcC-CCCCCCccccccCCCCC
Q 011622 106 DVQCPICLGIIK--KTRTVMECL-----HRFCRECIDKSMRLG-NNECPACRTHCASRRSL 158 (481)
Q Consensus 106 ~l~CpICl~~l~--~Pv~i~~Cg-----H~FC~~CI~~~l~~~-~~~CP~CR~~~~~~~~l 158 (481)
...|+||++.+. +++ ++||. |.|+..||.+|+... ...||+||..+.....+
T Consensus 15 ~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~ 74 (80)
T 2d8s_A 15 QDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL 74 (80)
T ss_dssp SCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred CCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence 568999998774 566 48996 999999999999843 36899999988764333
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=1.2e-06 Score=70.38 Aligned_cols=49 Identities=20% Similarity=0.508 Sum_probs=41.1
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhhcC-CCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG-NNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~-~~~CP~CR~~~~~ 154 (481)
...|+||..++..-..+..|+|.|+..||.+||+.. ..+||+|+..+..
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 457999999998666667899999999999999832 3789999997754
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.07 E-value=1.9e-06 Score=72.64 Aligned_cols=47 Identities=28% Similarity=0.605 Sum_probs=41.7
Q ss_pred cccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 108 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 108 ~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.|++|.-.+..-..++||.|.||+.|+..|.+.+.+.||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 69999988887666699999999999999998778999999998875
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.51 E-value=1.8e-05 Score=80.37 Aligned_cols=49 Identities=16% Similarity=0.569 Sum_probs=38.0
Q ss_pred ccccccccccccc----cee-c--ccCCCcccHHHHhhhhhcC----------CCCCCCccccccC
Q 011622 106 DVQCPICLGIIKK----TRT-V--MECLHRFCRECIDKSMRLG----------NNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~----Pv~-i--~~CgH~FC~~CI~~~l~~~----------~~~CP~CR~~~~~ 154 (481)
...|+||+..+.. |.. + ..|+|.|+..||.+|+... .+.||.|+.+++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4579999998875 311 1 3799999999999999731 1479999998875
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.48 E-value=7.2e-05 Score=57.39 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=38.8
Q ss_pred cccccccccccccceecccCCC-----cccHHHHhhhhhc-CCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKTRTVMECLH-----RFCRECIDKSMRL-GNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH-----~FC~~CI~~~l~~-~~~~CP~CR~~~~~ 154 (481)
...|.||+.....+. +.||.+ .|+..||.+|+.. ++..||+|+..+..
T Consensus 6 ~~~CrIC~~~~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 6 VPVCWICNEELGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CCEETTTTEECSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCEeEEeecCCCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 457999998777776 488654 8999999999983 46899999998753
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.70 E-value=0.00096 Score=64.71 Aligned_cols=49 Identities=20% Similarity=0.508 Sum_probs=41.5
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhhc-CCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~-~~~~CP~CR~~~~~ 154 (481)
...|.||..++..-+.+..|+|.|+..|+..|++. +...||.|+...+.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 56799999999987777779999999999999984 34699999997654
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.00 E-value=0.0044 Score=70.46 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=57.9
Q ss_pred cCcccccccccccccceecccCC-CcccHHHHhhhhhcCCCCCCCccccccCCCCCCCChhhhHHHHhhc
Q 011622 104 RKDVQCPICLGIIKKTRTVMECL-HRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY 172 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~Cg-H~FC~~CI~~~l~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~ 172 (481)
.+++.|||-++++.+||. ++.| ++|-+.+|.+|+.. ..+||.=|.+++. ..+.||..|...|....
T Consensus 889 P~~F~cPIs~~lM~DPVi-lpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~-~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVI-LPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKL-EDVTPNEELRQKILCFK 955 (968)
T ss_dssp CGGGBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred cHHhCCcchhhHHhCCeE-cCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCc-ccccccHHHHHHHHHHH
Confidence 468899999999999997 8997 69999999999984 5799999999987 56889999998886654
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.08 E-value=0.0074 Score=50.02 Aligned_cols=34 Identities=21% Similarity=0.598 Sum_probs=26.8
Q ss_pred Ccccccccccc-ccccee-cccCCCcccHHHHhhhh
Q 011622 105 KDVQCPICLGI-IKKTRT-VMECLHRFCRECIDKSM 138 (481)
Q Consensus 105 ~~l~CpICl~~-l~~Pv~-i~~CgH~FC~~CI~~~l 138 (481)
+++.|+||.+. +..|+. .+.|+|+||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 35789999975 566653 28999999999999833
No 75
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.49 E-value=0.028 Score=57.71 Aligned_cols=66 Identities=21% Similarity=0.396 Sum_probs=50.8
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhhhhh----cCCCCCCCccccccCCCCCCCChhhhHHHHhh
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----LGNNECPACRTHCASRRSLRDDPNYDALISAL 171 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~----~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l 171 (481)
.-.+.|||-...|..|+....|.|.-|++- ..|+. .....||+|.+.+.. ..+..+..+..++...
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~-~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIAL-ENLAISEFVDDILQNC 316 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCG-GGEEEBHHHHHHHTTS
T ss_pred EEeecCCCccccccccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCH-HHeeEcHHHHHHHHhc
Confidence 346899999999999999899999977764 23332 356799999998876 5677787777776443
No 76
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=92.74 E-value=0.084 Score=45.82 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=67.0
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccc-eEEEEEecccccCCCCCCCCCChhhhhhccccc
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEE-VEILMVKERLDAKGNQSTPIPTTDQLQILEGQE 455 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (481)
|.|.+-......+|.|.+--.-...++||.++..+|-.++.+.+++ |=+|| .+. . |+. ..
T Consensus 32 IPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V-n~~---~-------p~~--------~~ 92 (119)
T 3h9d_A 32 LPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYT-NDT---V-------LPS--------SA 92 (119)
T ss_dssp EEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEE-TTE---E-------CCT--------TS
T ss_pred EEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEE-CCc---C-------CCc--------cc
Confidence 7777778888889999999888999999999999999999999887 44444 211 1 111 36
Q ss_pred ccccccccccCCCCcchhhhhhh
Q 011622 456 TLAGLRVNHTSNTDHLILAYRQK 478 (481)
Q Consensus 456 ~l~~l~~~~~~~~~~l~~~y~~k 478 (481)
||++|+..|-...|.|||.|..-
T Consensus 93 ~m~~lY~~~kd~DGfLyv~Ys~e 115 (119)
T 3h9d_A 93 QMADIYSKYKDEDGFLYMKYSGE 115 (119)
T ss_dssp BHHHHHHHHCCTTSCEEEEEECC
T ss_pred hHHHHHHHcCCCCCeEEEEEecc
Confidence 89999999988899999999754
No 77
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.13 E-value=0.1 Score=43.34 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=40.5
Q ss_pred ccccccCcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 99 ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 99 ~~~~l~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
....+---+.|-.|--..+.-|. -..|.+|..|+..++. .+..||.|..++..
T Consensus 21 ~d~s~~G~~nCKsCWf~~k~LV~--C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 21 PDATHLGPQFCKSCWFENKGLVE--CNNHYLCLNCLTLLLS-VSNRCPICKMPLPT 73 (99)
T ss_dssp SSCCCSCCCCCCSSCSCCSSEEE--CSSCEEEHHHHHHTCS-SSSEETTTTEECCC
T ss_pred CCccccCcccChhhccccCCeee--ecchhhHHHHHHHHHh-hccCCcccCCcCCc
Confidence 33445567889999877665443 3449999999999998 66899999998876
No 78
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=91.90 E-value=0.16 Score=43.99 Aligned_cols=84 Identities=15% Similarity=0.273 Sum_probs=65.9
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEEEecccccCCCCCCCCCChhhhhhcccccc
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 456 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (481)
|.|.+-......+|.|.+--.--..++||.++..+|-.++.+.+++- ||+--+. .+ |+. ..|
T Consensus 31 iPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~a-lFl~Vn~---~~------p~~--------~~~ 92 (118)
T 3rui_B 31 IPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKA-IFIFVND---TL------PPT--------AAL 92 (118)
T ss_dssp EEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCC-EEEEBTT---BC------CCT--------TSB
T ss_pred eEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCcc-EEEEECC---cc------CCc--------cch
Confidence 67777777788999999987779999999999999999999998774 3332111 11 222 259
Q ss_pred cccccccccCCCCcchhhhhhh
Q 011622 457 LAGLRVNHTSNTDHLILAYRQK 478 (481)
Q Consensus 457 l~~l~~~~~~~~~~l~~~y~~k 478 (481)
|++|+..|-...|.|||.|..-
T Consensus 93 m~~lY~~~kdeDGfLyv~Ys~~ 114 (118)
T 3rui_B 93 MSAIYQEHKDKDGFLYVTYSGE 114 (118)
T ss_dssp HHHHHHHHCCTTSCEEEEEEEC
T ss_pred HHHHHHHcCCCCCeEEEEEecc
Confidence 9999999988999999999743
No 79
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=91.00 E-value=0.14 Score=52.29 Aligned_cols=65 Identities=20% Similarity=0.362 Sum_probs=50.7
Q ss_pred cCcccccccccccccceecccCCCcccHHHHhhhhh----cCCCCCCCccccccCCCCCCCChhhhHHHHh
Q 011622 104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----LGNNECPACRTHCASRRSLRDDPNYDALISA 170 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~----~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~ 170 (481)
.-.+.|||-...+..|+....|.|.-|.+- ..|+. .+...||+|.+.+.. ..+..+..+..++..
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~~-~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAAY-ESLILDGLFMEILND 281 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCCG-GGEEEBHHHHHHHTT
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccCH-HHeEEcHHHHHHHHh
Confidence 447899999999999999899999977764 33433 356799999998876 567888877777644
No 80
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=90.49 E-value=0.23 Score=43.37 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=65.9
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccce-EEEEEecccccCCCCCCCCCChhhhhhccccc
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEV-EILMVKERLDAKGNQSTPIPTTDQLQILEGQE 455 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~-e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (481)
|.|.+-......+|.|.+-=.--..++||.++..+|-.++.+.+++- =+|| .. .+ |+. ..
T Consensus 37 IPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V-nn----~l------Ps~--------s~ 97 (125)
T 3m95_A 37 VPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV-NN----VI------PPT--------SA 97 (125)
T ss_dssp EEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB-TT----BC------CCT--------TS
T ss_pred EEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE-CC----cc------CCc--------cc
Confidence 77777777788899999987788899999999999999999998873 3332 21 11 111 26
Q ss_pred ccccccccccCCCCcchhhhhhh
Q 011622 456 TLAGLRVNHTSNTDHLILAYRQK 478 (481)
Q Consensus 456 ~l~~l~~~~~~~~~~l~~~y~~k 478 (481)
||++|+..|-+..|-|||.|..-
T Consensus 98 ~m~~lY~~~kdeDGfLY~~Ys~e 120 (125)
T 3m95_A 98 TMGSLYQEHHDEDFFLYIAFSDE 120 (125)
T ss_dssp BHHHHHHHHCCTTSCEEEEEESS
T ss_pred hHHHHHHHcCCCCCeEEEEecCc
Confidence 89999999988999999999754
No 81
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=90.15 E-value=0.26 Score=41.95 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=63.4
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEEEecccccCCCCCCCCCChhhhhhcccccc
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 456 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (481)
|.|.+-......+|.|.+-=.-...++||.++..||-.++.+.+++ =||+.-+. .+ |+. ..|
T Consensus 28 IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~-alfl~vn~---~~------p~~--------~~~ 89 (110)
T 2r2q_A 28 VPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPED-ALFFFVNN---TI------PPT--------SAT 89 (110)
T ss_dssp EEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTS-CCEEEBTT---BC------CCT--------TSB
T ss_pred eEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCC-cEEEEECC---Ee------cCc--------cCh
Confidence 7777777777889999988777788999999999999999988776 23443221 11 111 358
Q ss_pred cccccccccCCCCcchhhhh
Q 011622 457 LAGLRVNHTSNTDHLILAYR 476 (481)
Q Consensus 457 l~~l~~~~~~~~~~l~~~y~ 476 (481)
|++|+..|-+..|.|+|.|.
T Consensus 90 m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 90 MGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp HHHHHHHHCCTTSCEEEEEE
T ss_pred HHHHHHHcCCCCCEEEEEEe
Confidence 99999999888999999995
No 82
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.64 E-value=0.18 Score=40.70 Aligned_cols=43 Identities=30% Similarity=0.766 Sum_probs=32.9
Q ss_pred CcccccccccccccceecccC----CCcccHHHHhhhhhc----CCCCCCCc
Q 011622 105 KDVQCPICLGIIKKTRTVMEC----LHRFCRECIDKSMRL----GNNECPAC 148 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~C----gH~FC~~CI~~~l~~----~~~~CP~C 148 (481)
..+.|.+|.+.|.+..+ ..| .|.||..|-...++. ..-.||.=
T Consensus 14 a~l~CtlC~erLEdtHF-VQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHF-VQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CSCCCSSSCSCCSSTTS-EECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CeeEeecchhhhccCce-eeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 46899999999998865 455 699999999998872 22357653
No 83
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=89.17 E-value=0.3 Score=42.96 Aligned_cols=84 Identities=10% Similarity=0.218 Sum_probs=66.3
Q ss_pred eEEEEeecCCCC-CCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE-EecccccCCCCCCCCCChhhhhhcccc
Q 011622 377 VRLMLVSADTQC-APSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM-VKERLDAKGNQSTPIPTTDQLQILEGQ 454 (481)
Q Consensus 377 ~~l~l~~~d~~~-~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (481)
|.|.+-...... +|.|.+--.--..++||.++..||-.++.+.+++- ||+ .-+.. . |+ -.
T Consensus 36 IPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~a-lFl~~vn~~--~-------p~--------~~ 97 (130)
T 2zjd_A 36 IPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQA-FFLLVNGHS--M-------VS--------VS 97 (130)
T ss_dssp EEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCC-EEEEETTTE--E-------CC--------TT
T ss_pred eEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCce-EEEEEECCc--c-------CC--------cc
Confidence 777777888888 99999888888899999999999999999998773 444 32221 1 11 13
Q ss_pred cccccccccccCCCCcchhhhhhh
Q 011622 455 ETLAGLRVNHTSNTDHLILAYRQK 478 (481)
Q Consensus 455 ~~l~~l~~~~~~~~~~l~~~y~~k 478 (481)
.||++|+..|-...|.|||.|..-
T Consensus 98 ~~m~~lY~~~kdeDGfLyv~Ys~e 121 (130)
T 2zjd_A 98 TPISEVYESEKDEDGFLYMVYASQ 121 (130)
T ss_dssp SBHHHHHHHHCCTTSCEEEEEEEH
T ss_pred chHHHHHHHhCCCCCEEEEEEeCC
Confidence 679999999988899999999743
No 84
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=88.94 E-value=0.32 Score=41.92 Aligned_cols=84 Identities=14% Similarity=0.239 Sum_probs=64.4
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEEEecccccCCCCCCCCCChhhhhhcccccc
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 456 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (481)
|.|.+-...+..+|-|.+--.-...++||.++..||-.++.+.+++- ||+.-+. .+ |+. ..|
T Consensus 29 IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~a-lfl~vn~---~~------p~~--------~~~ 90 (117)
T 1eo6_A 29 VPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKA-IFLFVDK---TV------PQS--------SLT 90 (117)
T ss_dssp EEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSC-CEEEBTT---BC------CCT--------TSB
T ss_pred EEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCc-EEEEECC---Ee------cCc--------cch
Confidence 77777777788899999877778889999999999999999887762 3443221 11 111 358
Q ss_pred cccccccccCCCCcchhhhhhh
Q 011622 457 LAGLRVNHTSNTDHLILAYRQK 478 (481)
Q Consensus 457 l~~l~~~~~~~~~~l~~~y~~k 478 (481)
|++|+..|-+..|.|+|.|..-
T Consensus 91 m~~LY~~~kd~DGfLyi~Ys~~ 112 (117)
T 1eo6_A 91 MGQLYEKEKDEDGFLYVAYSGE 112 (117)
T ss_dssp HHHHHHHHCCTTSCEEEEEECC
T ss_pred HHHHHHHhCCCCCEEEEEEeCC
Confidence 9999999988899999999753
No 85
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=88.35 E-value=0.3 Score=40.73 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=59.4
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEEEecccccCCCCCCCCCChhhhhhcccccc
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 456 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (481)
|.|.|.+.. .+|.|.+.=.-...+++|.++..||-.++.+. -|=+|| +. .+. |+ -++|
T Consensus 14 V~V~~~~~~--~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyv--n~-~~~-------Ps--------~d~~ 71 (96)
T 1wz3_A 14 IVVHLRATG--GAPILKQSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYV--NS-AFS-------PN--------PDES 71 (96)
T ss_dssp EEEEEEECT--TCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEE--EE-EEC-------CC--------TTSB
T ss_pred EEEEEEECC--CCCcccccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEE--CC-ccc-------CC--------hhhH
Confidence 556666663 39999999888999999999999999999887 333333 21 121 11 1378
Q ss_pred cccccccccCCCCcchhhhhhh
Q 011622 457 LAGLRVNHTSNTDHLILAYRQK 478 (481)
Q Consensus 457 l~~l~~~~~~~~~~l~~~y~~k 478 (481)
+++|+..|-. .|.|||.|.--
T Consensus 72 m~~LY~~~kd-DGfLyi~Ys~~ 92 (96)
T 1wz3_A 72 VIDLYNNFGF-DGKLVVNYACS 92 (96)
T ss_dssp HHHHHHHHCB-TTBEEEEEESC
T ss_pred HHHHHHHhCC-CCEEEEEEeCC
Confidence 9999999987 99999999743
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=85.39 E-value=0.7 Score=37.94 Aligned_cols=49 Identities=31% Similarity=0.619 Sum_probs=38.1
Q ss_pred ccccccccccccc-----c-eecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKK-----T-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~-----P-v~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.-.|.||-+.+-- + |.+-.|+-..|+.|+.--.+.++..||.|.+.+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4589999987431 1 23356888899999988777888999999998863
No 87
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=83.75 E-value=0.11 Score=43.90 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=55.5
Q ss_pred CCCcccccCcchHHHHHHHhHhccCCcccceEEEEEecccccCCC---CCC------CCCChhhhhhccccccccccccc
Q 011622 393 QQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGN---QST------PIPTTDQLQILEGQETLAGLRVN 463 (481)
Q Consensus 393 ~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~~~~~~~~~~~---~~~------~~~~~~~~~~l~~~~~l~~l~~~ 463 (481)
+-=|+--.++-||-|||+|+|..+.|..-.- +.....++ .+- ..+....+-.|++..||..+-..
T Consensus 22 ~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~------~~e~~~~~~~~~~~~~~~IYia~~~gq~~~L~gs~tLe~VneK 95 (111)
T 3gs2_A 22 QTRYIKTSGNATVDHLSKYLAVRLALEELRS------KGESNQMNLDTASEKQYTIYIATASGQFTVLDGSFSLELVSEK 95 (111)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHHHHHHHH------HHHSSCCSCCC--CCCEEEEEECTTSCEEECCTTSBHHHHHHH
T ss_pred ceEEEEcCCCccHHHHHHHHHHHHhHHHhhc------cccccccCccccceeeeEEEEccCCCeEEEccCcccHHHHhhh
Confidence 4567777899999999999999888762111 11110111 000 01556778899999999999999
Q ss_pred ccCCCCcchhhhhhh
Q 011622 464 HTSNTDHLILAYRQK 478 (481)
Q Consensus 464 ~~~~~~~l~~~y~~k 478 (481)
||--+--|.|-|..+
T Consensus 96 ywkvnkplelYYa~~ 110 (111)
T 3gs2_A 96 YWKVNKPMELYYAPT 110 (111)
T ss_dssp HTCSSSCEEEEEEEC
T ss_pred hccCCCCeeEEeccc
Confidence 998888888888753
No 88
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=80.64 E-value=0.96 Score=37.26 Aligned_cols=73 Identities=15% Similarity=0.258 Sum_probs=56.4
Q ss_pred CCCCCCCCCcccccCcchHHHHHHHhHhccCCcccc-eEEEEEecccccCCCCCCCCCChhhhhhccccccccccccccc
Q 011622 387 QCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEE-VEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRVNHT 465 (481)
Q Consensus 387 ~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~ 465 (481)
-.+|.|.+-=.--..+++|.++..||-.++.+.+++ |=+|| .. .+. |+ -++|+++|+..|-
T Consensus 14 g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyV-nn--~~~-------P~--------~d~~~~~Ly~~~k 75 (91)
T 4gdk_A 14 GDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYV-NQ--SFA-------PS--------PDQEVGTLYECFG 75 (91)
T ss_dssp SSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEE-TT--TBC-------CC--------TTCBHHHHHHHHC
T ss_pred CCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEE-CC--ccC-------CC--------hhhHHHHHHHHhC
Confidence 468999998888889999999999999999998765 44444 11 111 11 1568999999998
Q ss_pred CCCCcchhhhhhh
Q 011622 466 SNTDHLILAYRQK 478 (481)
Q Consensus 466 ~~~~~l~~~y~~k 478 (481)
..|.|||.|..-
T Consensus 76 -~DGfLyv~Ys~~ 87 (91)
T 4gdk_A 76 -SDGKLVLHYCKS 87 (91)
T ss_dssp -BTTEEEEEEESS
T ss_pred -CCCEEEEEEeCc
Confidence 899999999743
No 89
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=77.85 E-value=1.4 Score=33.54 Aligned_cols=41 Identities=27% Similarity=0.609 Sum_probs=30.2
Q ss_pred ccccccccccccc--eecccCCCcccHHHHhhhhhcCCCCCCCc
Q 011622 107 VQCPICLGIIKKT--RTVMECLHRFCRECIDKSMRLGNNECPAC 148 (481)
Q Consensus 107 l~CpICl~~l~~P--v~i~~CgH~FC~~CI~~~l~~~~~~CP~C 148 (481)
..|--|...|... .....|++.||..|= .++......||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD-~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH-HTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchh-HHHHhhccCCcCC
Confidence 3599999888543 345789999999994 3444456789988
No 90
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.53 E-value=24 Score=30.25 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=24.7
Q ss_pred cccccccccccc---cceecccCCCcccHHHHhhhh
Q 011622 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSM 138 (481)
Q Consensus 106 ~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l 138 (481)
...|.+|...|. .-..+-.||+.||..|....+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 347999988765 334557899999999976543
No 91
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=64.05 E-value=7.9 Score=29.69 Aligned_cols=46 Identities=15% Similarity=0.327 Sum_probs=33.0
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhh---cCCCCCCCccccc
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTHC 152 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~---~~~~~CP~CR~~~ 152 (481)
...|.||.+- .+-+..-.|...|+..|+...+. .+...||.|....
T Consensus 12 ~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 4469999863 23344456999999999987775 2456899997643
No 92
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=63.63 E-value=5.7 Score=32.61 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=50.2
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEEEecccccCCCCCCCCCChhhhhhcccccc
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQET 456 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (481)
|.+.+.|. -.+|.|.+-=.--..+++|.++..||-.++.+ +-|=+|| + +.+. |+ -++|
T Consensus 9 v~vrfk~~--g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyV--N-n~f~-------Ps--------~d~~ 66 (91)
T 3w1s_C 9 IQIKFQPI--GSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYI--N-NSFA-------PS--------PQQN 66 (91)
T ss_dssp EEEEEEEC--CC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEE--T-TTBC-------CC--------TTSB
T ss_pred EEEEEEec--CCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEE--C-CccC-------CC--------cccH
Confidence 33444443 46899998877788999999999999999998 4454444 1 1111 11 2458
Q ss_pred cccccccccCCCCcchhhhhh
Q 011622 457 LAGLRVNHTSNTDHLILAYRQ 477 (481)
Q Consensus 457 l~~l~~~~~~~~~~l~~~y~~ 477 (481)
+++|+..|- ..|.|||.|..
T Consensus 67 ~~~Ly~~fk-~dg~Lyv~Ys~ 86 (91)
T 3w1s_C 67 IGELWMQFK-TNDELIVSYCA 86 (91)
T ss_dssp HHHHHHHHC-BTTEEEEEEEC
T ss_pred HHHHHHHhC-CCCEEEEEEeC
Confidence 999999988 69999999964
No 93
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=62.64 E-value=11 Score=33.72 Aligned_cols=44 Identities=23% Similarity=0.592 Sum_probs=31.3
Q ss_pred cccccccccccc----cceecccCCCcccHHHHhhhhh-cCCCCCCCccc
Q 011622 106 DVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMR-LGNNECPACRT 150 (481)
Q Consensus 106 ~l~CpICl~~l~----~Pv~i~~CgH~FC~~CI~~~l~-~~~~~CP~CR~ 150 (481)
.-.|.+|...|. ..+.+..|.|.+|..|-. |.. .....|-+|+.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 458999998763 345568899999999973 332 23456877876
No 94
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=61.09 E-value=1.9 Score=34.65 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=22.8
Q ss_pred cccccccccc-----cceecccCCCcccHHHHhhh
Q 011622 108 QCPICLGIIK-----KTRTVMECLHRFCRECIDKS 137 (481)
Q Consensus 108 ~CpICl~~l~-----~Pv~i~~CgH~FC~~CI~~~ 137 (481)
-||-|...+. .++.+..|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4998877553 23555569999999999888
No 95
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=60.54 E-value=3.4 Score=34.91 Aligned_cols=33 Identities=18% Similarity=0.444 Sum_probs=22.1
Q ss_pred cccccceecccCCCcccHHHHhhhhhcCCCCCCCccccc
Q 011622 114 GIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 152 (481)
Q Consensus 114 ~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~ 152 (481)
.++..|..+..||+.|+ .-+. ....||.|+..-
T Consensus 62 ~L~v~p~~C~~CG~~F~-----~~~~-kPsrCP~CkSe~ 94 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVFK-----AEIN-IPSRCPKCKSEW 94 (105)
T ss_dssp EEEECCCBBTTTCCBCC-----CCSS-CCSSCSSSCCCC
T ss_pred EEEEECcChhhCcCeec-----ccCC-CCCCCcCCCCCc
Confidence 34555666799999992 2222 347899999843
No 96
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=58.85 E-value=2.6 Score=33.52 Aligned_cols=33 Identities=33% Similarity=0.653 Sum_probs=24.2
Q ss_pred cccccc--cccccc-----cceecc-----cCCCcccHHHHhhhh
Q 011622 106 DVQCPI--CLGIIK-----KTRTVM-----ECLHRFCRECIDKSM 138 (481)
Q Consensus 106 ~l~CpI--Cl~~l~-----~Pv~i~-----~CgH~FC~~CI~~~l 138 (481)
...||- |...+. ..+.+. .|++.||..|...|-
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 557887 876553 235544 799999999998874
No 97
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=58.62 E-value=2.7 Score=31.76 Aligned_cols=34 Identities=26% Similarity=0.572 Sum_probs=25.3
Q ss_pred ccccccccccccc-----eeccc--CCCcccHHHHhhhhhc
Q 011622 107 VQCPICLGIIKKT-----RTVME--CLHRFCRECIDKSMRL 140 (481)
Q Consensus 107 l~CpICl~~l~~P-----v~i~~--CgH~FC~~CI~~~l~~ 140 (481)
-.||-|...+... ++... |++.||..|...|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4799998877643 44344 9999999999888763
No 98
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.31 E-value=23 Score=30.88 Aligned_cols=45 Identities=16% Similarity=0.370 Sum_probs=29.7
Q ss_pred cccccccccccc----cceecccCCCcccHHHHhhhhh---cCCCCCCCccc
Q 011622 106 DVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMR---LGNNECPACRT 150 (481)
Q Consensus 106 ~l~CpICl~~l~----~Pv~i~~CgH~FC~~CI~~~l~---~~~~~CP~CR~ 150 (481)
.-.|.+|...|. ..+.+..|.|.+|..|-..... .....|-+|+.
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 447999998773 2355678999999998654321 12345777765
No 99
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=51.86 E-value=3.1 Score=35.92 Aligned_cols=47 Identities=21% Similarity=0.586 Sum_probs=30.9
Q ss_pred Ccccccccccccc---cceecccCCCcccHHHHhhhhhcCCCCCCCccccc
Q 011622 105 KDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 152 (481)
Q Consensus 105 ~~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~ 152 (481)
....|..|...|. .-..+-.||..||..|....+. ....|-.|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~~~~ 67 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQRFR 67 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHHHHH
Confidence 3468999988765 3345578999999999876654 346677776543
No 100
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=50.67 E-value=5.4 Score=44.66 Aligned_cols=51 Identities=22% Similarity=0.428 Sum_probs=39.0
Q ss_pred cCcccccccccccccc---------eecccCCCcc--------------------cHHHHhhhhhc-------CCCCCCC
Q 011622 104 RKDVQCPICLGIIKKT---------RTVMECLHRF--------------------CRECIDKSMRL-------GNNECPA 147 (481)
Q Consensus 104 ~~~l~CpICl~~l~~P---------v~i~~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~ 147 (481)
.+--.|+-|+.-+.+| +.|+.||..| |..|-..+-.. ....||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 3466899999988776 4568899888 99999988752 2357999
Q ss_pred ccccccC
Q 011622 148 CRTHCAS 154 (481)
Q Consensus 148 CR~~~~~ 154 (481)
|.-.+..
T Consensus 184 CGP~l~l 190 (772)
T 4g9i_A 184 CGPSYRL 190 (772)
T ss_dssp TSCCEEE
T ss_pred CCceEEE
Confidence 9876643
No 101
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=49.04 E-value=16 Score=29.66 Aligned_cols=35 Identities=17% Similarity=0.438 Sum_probs=23.7
Q ss_pred ccCcccccccccccccce-ecccCCCcccHHHHhhh
Q 011622 103 IRKDVQCPICLGIIKKTR-TVMECLHRFCRECIDKS 137 (481)
Q Consensus 103 l~~~l~CpICl~~l~~Pv-~i~~CgH~FC~~CI~~~ 137 (481)
+..+-.|+||...-..-. -+--|+-.|+..|+.+.
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccccccceeccccccccccHhhcccc
Confidence 345678999985433221 01348999999999986
No 102
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=48.21 E-value=16 Score=27.23 Aligned_cols=44 Identities=23% Similarity=0.546 Sum_probs=31.3
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhh---cCCCCCCCccc
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRT 150 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~---~~~~~CP~CR~ 150 (481)
...|.||... ..-+..-.|...|+..|+..-+. .+...||.|..
T Consensus 11 ~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 11 QDYCEVCQQG-GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCTTTSCC-SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCccCCCC-CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4579999873 23333356888999999987553 34568999975
No 103
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=48.16 E-value=6.1 Score=43.43 Aligned_cols=48 Identities=25% Similarity=0.602 Sum_probs=37.2
Q ss_pred Ccccccccccccccc---------eecccCCCcc--------------------cHHHHhhhhhc-------CCCCCCCc
Q 011622 105 KDVQCPICLGIIKKT---------RTVMECLHRF--------------------CRECIDKSMRL-------GNNECPAC 148 (481)
Q Consensus 105 ~~l~CpICl~~l~~P---------v~i~~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~C 148 (481)
+--.|+-|+.-+.+| +.++.||..| |..|...|-.. ....||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 456899999888776 4567888887 99999888752 23579999
Q ss_pred cccc
Q 011622 149 RTHC 152 (481)
Q Consensus 149 R~~~ 152 (481)
.-.+
T Consensus 96 GP~l 99 (657)
T 3ttc_A 96 GPYL 99 (657)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 8766
No 104
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=47.66 E-value=8.9 Score=34.84 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=31.9
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhh---cCCCCCCCccccc
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTHC 152 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~---~~~~~CP~CR~~~ 152 (481)
+..|.+|..- .+-+.+-.|...|+..|+...+. .+...||.|+..-
T Consensus 4 ~~~C~~C~~~-g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG-GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC-SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC-CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 3469999854 22333456888999999877655 2456899998743
No 105
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=46.77 E-value=8.1 Score=36.18 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=26.1
Q ss_pred cCcccccccccccc---cceecccCCCcccHHHHhhhh
Q 011622 104 RKDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSM 138 (481)
Q Consensus 104 ~~~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l 138 (481)
.+...|.+|...|. .-..+-.||+.||..|.....
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 34568999988765 335567899999999976543
No 106
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=46.37 E-value=6.7 Score=43.85 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=37.7
Q ss_pred Ccccccccccccccc---------eecccCCCcc--------------------cHHHHhhhhhc-------CCCCCCCc
Q 011622 105 KDVQCPICLGIIKKT---------RTVMECLHRF--------------------CRECIDKSMRL-------GNNECPAC 148 (481)
Q Consensus 105 ~~l~CpICl~~l~~P---------v~i~~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~C 148 (481)
+--.|+-|+.-+.+| +.|+.||..| |..|...|-.. ....||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 456899999888776 4567888776 99999988652 23579999
Q ss_pred cccccC
Q 011622 149 RTHCAS 154 (481)
Q Consensus 149 R~~~~~ 154 (481)
.-.+..
T Consensus 190 GP~l~l 195 (761)
T 3vth_A 190 GPSLSF 195 (761)
T ss_dssp SCCEEE
T ss_pred CCeeEE
Confidence 876643
No 107
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=44.76 E-value=13 Score=28.82 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=23.4
Q ss_pred ccccccccccc---cceecccCCCcccHHHHhhh
Q 011622 107 VQCPICLGIIK---KTRTVMECLHRFCRECIDKS 137 (481)
Q Consensus 107 l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~ 137 (481)
..|.+|...|. .....-.||..||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 47999988665 33445789999999997543
No 108
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=44.38 E-value=17 Score=27.84 Aligned_cols=43 Identities=7% Similarity=0.178 Sum_probs=33.6
Q ss_pred EEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 379 LMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 379 l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
|.+..+++++++ |.+.|+.||..|-+.|+..+.++++..-|+.
T Consensus 6 i~vk~~~g~~~~------~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 6 IVVKTLMGRTII------LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEEECGGGCEEE------EECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEeCCCCEEE------EEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 334445555432 6788999999999999999999999987765
No 109
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=43.99 E-value=11 Score=35.66 Aligned_cols=34 Identities=21% Similarity=0.472 Sum_probs=25.4
Q ss_pred Ccccccccccccc---cceecccCCCcccHHHHhhhh
Q 011622 105 KDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSM 138 (481)
Q Consensus 105 ~~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l 138 (481)
+...|.+|...|. .-..+-.||+.||..|.....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 3458999987665 335567899999999987543
No 110
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=43.96 E-value=12 Score=28.00 Aligned_cols=45 Identities=18% Similarity=0.440 Sum_probs=30.5
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhh---cCCCCCCCcccc
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTH 151 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~---~~~~~CP~CR~~ 151 (481)
...|.||... -.-+..-.|...|+..|+..-+. .+...||.|...
T Consensus 9 ~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKDG-GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCCC-SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCcCCCCCCC-CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4579999863 22233345888999999986554 245689999764
No 111
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=43.71 E-value=13 Score=31.15 Aligned_cols=47 Identities=23% Similarity=0.399 Sum_probs=35.8
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
+-+.|..|...|........=|..||..|....+. ..|+.|..+|..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA---VVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC---CBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC---ccCcccCCcCCc
Confidence 35889999988875333356788999999877554 679999998874
No 112
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=43.70 E-value=6.9 Score=29.48 Aligned_cols=48 Identities=15% Similarity=0.282 Sum_probs=33.3
Q ss_pred cccccccccccc----cceecccCCCcccHHHHhhhhh------cCCCCCCCcccccc
Q 011622 106 DVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMR------LGNNECPACRTHCA 153 (481)
Q Consensus 106 ~l~CpICl~~l~----~Pv~i~~CgH~FC~~CI~~~l~------~~~~~CP~CR~~~~ 153 (481)
...|.||..... .-+..-.|...|+..|+..-+. .+...||.|.....
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 567999997632 2344456888999999986442 25578999976543
No 113
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=42.42 E-value=11 Score=34.96 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=31.6
Q ss_pred ccccccccccccceecccCCCcccHHHHhhhhh---cCCCCCCCccccc
Q 011622 107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTHC 152 (481)
Q Consensus 107 l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~---~~~~~CP~CR~~~ 152 (481)
..|.+|..-= +-+.+-.|...|+..|+.+.+. .+...||.|+..-
T Consensus 8 ~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 8 DWCAVCQNGG-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSBTTTCCCE-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCC-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4699998542 2233456888999999977654 2457899998743
No 114
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=42.35 E-value=14 Score=28.53 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=34.2
Q ss_pred Cccccccccccccc--ceecccCCCcccHHHHhhhhhc---CCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKK--TRTVMECLHRFCRECIDKSMRL---GNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~--Pv~i~~CgH~FC~~CI~~~l~~---~~~~CP~CR~~~~~ 154 (481)
+...|+||...... -+.+-.|..-|+..|+..-... +...||.|...+..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 34579999876543 2333468889999999765442 45689999876653
No 115
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=42.32 E-value=5.3 Score=40.78 Aligned_cols=33 Identities=18% Similarity=0.410 Sum_probs=0.0
Q ss_pred cccccccccccc---cceecccCCCcccHHHHhhhh
Q 011622 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSM 138 (481)
Q Consensus 106 ~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l 138 (481)
...|.+|...|. .-..+..||+.||..|....+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 457999988665 234457899999999987654
No 116
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=42.17 E-value=21 Score=27.28 Aligned_cols=44 Identities=7% Similarity=0.213 Sum_probs=34.3
Q ss_pred EEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 378 RLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 378 ~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
.|.+..++++++ .+.+.|+.||..|.+.|+..+.++++..-|+.
T Consensus 5 ~i~vk~~~g~~~------~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 5 QIFVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEEEECTTSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEEcCCCCEE------EEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 444455565544 36788999999999999999999999887764
No 117
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=41.63 E-value=5.5 Score=26.85 Aligned_cols=16 Identities=19% Similarity=0.603 Sum_probs=11.7
Q ss_pred ccccccccccccccee
Q 011622 106 DVQCPICLGIIKKTRT 121 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~ 121 (481)
.+.||||+..|..+..
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 5788888887776643
No 118
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=41.37 E-value=12 Score=29.98 Aligned_cols=47 Identities=17% Similarity=0.436 Sum_probs=34.8
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.-+.|..|...|........=+..||..|....+. ..|..|..+|..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~---~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS---PKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCC---CBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhcC---CccccCCCcccc
Confidence 34789999988865433255678899999876543 679999998863
No 119
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=40.94 E-value=13 Score=30.01 Aligned_cols=33 Identities=18% Similarity=0.480 Sum_probs=24.9
Q ss_pred cccccccccccc---cceecccCCCcccHHHHhhhh
Q 011622 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSM 138 (481)
Q Consensus 106 ~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l 138 (481)
...|.+|...|. .-..+..||+.||..|.....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 457999987664 334557899999999987654
No 120
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=40.68 E-value=30 Score=25.57 Aligned_cols=32 Identities=9% Similarity=0.236 Sum_probs=28.7
Q ss_pred cccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 396 YLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 396 ~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
.+.+.|+.||..|.+.|+.++.++++..-|+.
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 47788999999999999999999999887775
No 121
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=40.48 E-value=8.4 Score=32.17 Aligned_cols=12 Identities=42% Similarity=1.107 Sum_probs=11.1
Q ss_pred cccHHHHhhhhh
Q 011622 128 RFCRECIDKSMR 139 (481)
Q Consensus 128 ~FC~~CI~~~l~ 139 (481)
-||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999997
No 122
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=40.46 E-value=13 Score=29.41 Aligned_cols=33 Identities=21% Similarity=0.620 Sum_probs=24.6
Q ss_pred cccccccccccc---cceecccCCCcccHHHHhhhh
Q 011622 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSM 138 (481)
Q Consensus 106 ~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l 138 (481)
...|.+|...|. .-..+-.||..||..|....+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCee
Confidence 447999988765 334457899999999987543
No 123
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=40.28 E-value=8.5 Score=32.09 Aligned_cols=12 Identities=42% Similarity=1.076 Sum_probs=11.1
Q ss_pred cccHHHHhhhhh
Q 011622 128 RFCRECIDKSMR 139 (481)
Q Consensus 128 ~FC~~CI~~~l~ 139 (481)
-||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999997
No 124
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=40.24 E-value=14 Score=29.43 Aligned_cols=34 Identities=15% Similarity=0.421 Sum_probs=25.3
Q ss_pred Ccccccccccccc---cceecccCCCcccHHHHhhhh
Q 011622 105 KDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSM 138 (481)
Q Consensus 105 ~~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l 138 (481)
+...|.+|...|. .-..+-.||+.||..|....+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~ 56 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRA 56 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCeE
Confidence 3457999988765 334557899999999986643
No 125
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=37.38 E-value=14 Score=29.80 Aligned_cols=33 Identities=24% Similarity=0.515 Sum_probs=24.4
Q ss_pred cccccccccccc---cceecccCCCcccHHHHhhhh
Q 011622 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSM 138 (481)
Q Consensus 106 ~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l 138 (481)
...|.+|...|. .-..+-.||+.||..|....+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSA 44 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCce
Confidence 447999988665 334457899999999986543
No 126
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.70 E-value=20 Score=30.12 Aligned_cols=47 Identities=9% Similarity=0.138 Sum_probs=36.0
Q ss_pred cccccccccccc---cceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
-+.|..|...|. .... ..=+..||..|....+. ....|..|..+|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~-~~~g~~yC~~cy~~~f~-~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFG-NSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCE-EETTEEECHHHHHHHHC-CCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEE-EECCeeecHHHHHHHcC-CCCccccCCCCcCc
Confidence 478999999886 2343 56778899999988775 22379999998875
No 127
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=36.46 E-value=25 Score=31.13 Aligned_cols=44 Identities=25% Similarity=0.498 Sum_probs=29.1
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhh----------cCCCCCCCccc
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----------LGNNECPACRT 150 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~----------~~~~~CP~CR~ 150 (481)
+..|.+|.+-=. -+.+-.|-..||..||.+-+. .+...||.|..
T Consensus 63 ~d~C~vC~~GG~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 456777765221 112246889999999996552 35678999964
No 128
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.38 E-value=17 Score=28.80 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=23.7
Q ss_pred cccccccccccc---cceecccCCCcccHHHHhhh
Q 011622 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKS 137 (481)
Q Consensus 106 ~l~CpICl~~l~---~Pv~i~~CgH~FC~~CI~~~ 137 (481)
...|.+|...|. .-..+-.||..||..|....
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 457999988664 33445789999999997543
No 129
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.75 E-value=5.9 Score=32.98 Aligned_cols=42 Identities=24% Similarity=0.636 Sum_probs=28.8
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
+..||+|...+.- .=++.+|..|-..+.. ...||.|..++..
T Consensus 32 ~~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~--~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQ-----DNGHARCRSCGEFIEM--KALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEE-----ETTEEEETTTCCEEEE--EEECTTTCSBCEE
T ss_pred cccCccCCCccee-----cCCEEECccccchhhc--cccCcchhhHHHH
Confidence 4799999987652 1134458888765543 3679999987754
No 130
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=34.73 E-value=8.8 Score=38.28 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=33.4
Q ss_pred cCcccccccccccccceecc---cCC--CcccHHHHhhhhhcCCCCCCCcccc
Q 011622 104 RKDVQCPICLGIIKKTRTVM---ECL--HRFCRECIDKSMRLGNNECPACRTH 151 (481)
Q Consensus 104 ~~~l~CpICl~~l~~Pv~i~---~Cg--H~FC~~CI~~~l~~~~~~CP~CR~~ 151 (481)
...-.||+|.....-.+... .=| +.+|..|-..|-- ....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~-~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-VRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-CTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee-cCcCCcCCCCC
Confidence 44679999998776554311 234 5679999999976 44789999874
No 131
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=34.72 E-value=40 Score=24.82 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=33.8
Q ss_pred EEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 379 LMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 379 l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
|.+-.++++++ .+.+.|+.||..|.+.|+..+.++++..-|+.
T Consensus 3 i~vk~~~g~~~------~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 3 IKVKTLTGKEI------EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp EEEECTTSCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCCCEE------EEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 33444555544 36788999999999999999999999887765
No 132
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=34.27 E-value=27 Score=28.39 Aligned_cols=46 Identities=15% Similarity=0.330 Sum_probs=32.2
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhh---cCCCCCCCcccc
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTH 151 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~---~~~~~CP~CR~~ 151 (481)
....|.+|..-- +-+.+-.|.-.|+..|+.+-+. .+...||.|...
T Consensus 24 n~~~C~vC~~~g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSSS-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCCC-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 356799998642 2333456888899999977664 245689999864
No 133
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=33.85 E-value=36 Score=24.08 Aligned_cols=43 Identities=28% Similarity=0.597 Sum_probs=28.3
Q ss_pred cccccccccc--cceecccCCCcccHHHHhhhhh---cCCCCCCCccc
Q 011622 108 QCPICLGIIK--KTRTVMECLHRFCRECIDKSMR---LGNNECPACRT 150 (481)
Q Consensus 108 ~CpICl~~l~--~Pv~i~~CgH~FC~~CI~~~l~---~~~~~CP~CR~ 150 (481)
.|.||...-. .-+..-.|...|+..|+..-+. .+...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4788875432 2233356888999999976544 24567999965
No 134
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=32.26 E-value=14 Score=27.53 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=30.5
Q ss_pred Cccccccccccccc---ceecccCCCcccHHHHhhhhh----cCCCCCCCcccc
Q 011622 105 KDVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMR----LGNNECPACRTH 151 (481)
Q Consensus 105 ~~l~CpICl~~l~~---Pv~i~~CgH~FC~~CI~~~l~----~~~~~CP~CR~~ 151 (481)
+...|+||...+.+ -|.+-.|..-|+..|+.-... .....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 35679999987642 233345777788888754322 145689999763
No 135
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.06 E-value=52 Score=24.67 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=35.1
Q ss_pred cceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 374 ELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 374 e~~~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
.+.|.++ .++++.+ .+.+.|+.||..|.+.|+..+.++++..-|+.
T Consensus 7 ~m~i~vk--~~~g~~~------~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 7 GMQLTVK--ALQGREC------SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp SEEEEEE--ETTSCEE------EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred cEEEEEE--eCCCCEE------EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 3444444 5565544 36788999999999999999999999888765
No 136
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=31.75 E-value=39 Score=25.18 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=34.3
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
+.|.+-. +++.+ .+.+.|+.||..|.+.|+..++++++..-|+.
T Consensus 5 m~i~vk~-~g~~~------~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 5 LNIHIKS-GQDKW------EVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp EEEEEEE-TTEEE------EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEEE-CCEEE------EEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 4444444 55443 36788999999999999999999999888764
No 137
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=31.55 E-value=42 Score=26.41 Aligned_cols=44 Identities=7% Similarity=0.213 Sum_probs=34.6
Q ss_pred EEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 378 RLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 378 ~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
.|.+-.++++.+ .|.+.|+.||..|-+.|+..+.++++..-|+.
T Consensus 3 ~i~vk~~~g~~~------~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 3 QIFVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp EEEEEETTCCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEeCCCCEE------EEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 344455666554 26788999999999999999999999987764
No 138
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=30.88 E-value=52 Score=25.25 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=34.6
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
+.|.+-.++++.+ .+.+.|+.||..|.+.|+..+.++++..-|+.
T Consensus 8 m~i~Vk~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 8 IQVFVKNPDGGSY------AYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp EEEEEEETTTEEE------EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred EEEEEEcCCCCEE------EEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 3344445555544 36788999999999999999999999988764
No 139
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=30.30 E-value=42 Score=26.29 Aligned_cols=44 Identities=9% Similarity=0.227 Sum_probs=35.9
Q ss_pred EEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 378 RLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 378 ~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
.+.+..++++++. +.+.|+.||..|.+-|+..+.++++..-|+.
T Consensus 11 ~i~v~~~~G~~~~------l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 11 QLFIKTLTGKTFT------VEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp EEEEEETTSCEEE------EECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEEeCCCCEEE------EEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 4455667776653 7788999999999999999999999887765
No 140
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=30.28 E-value=15 Score=27.77 Aligned_cols=46 Identities=20% Similarity=0.525 Sum_probs=31.4
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhh---cCCCCCCCcccc
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTH 151 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~---~~~~~CP~CR~~ 151 (481)
.+..|.||... ..-+.+-.|...|+..|+..-+. .+...||.|...
T Consensus 7 ~~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG-GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC-SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC-CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 35679999864 23333456888999999986544 245679999764
No 141
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=30.14 E-value=26 Score=28.21 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=33.7
Q ss_pred cCccccccccccc-c---cceecccCCCcccHHHHhhhhh-cCCCCCCCcccccc
Q 011622 104 RKDVQCPICLGII-K---KTRTVMECLHRFCRECIDKSMR-LGNNECPACRTHCA 153 (481)
Q Consensus 104 ~~~l~CpICl~~l-~---~Pv~i~~CgH~FC~~CI~~~l~-~~~~~CP~CR~~~~ 153 (481)
.+...|.||...- . .-+.+-.|.-.|+..|+..-.. .+...||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 3466899999753 1 2233356888999999976433 35678999977543
No 142
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.91 E-value=12 Score=27.39 Aligned_cols=44 Identities=20% Similarity=0.576 Sum_probs=29.3
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhh---cCCCCCCCccc
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRT 150 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~---~~~~~CP~CR~ 150 (481)
...|.||... ..-+..-.|...|+..|+..-+. .+...||.|..
T Consensus 9 ~~~C~vC~~~-g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS-GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS-SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCccCCCC-CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4579999874 22333356888999999986554 23457888853
No 143
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=29.89 E-value=18 Score=26.74 Aligned_cols=46 Identities=20% Similarity=0.553 Sum_probs=31.2
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhhh---cCCCCCCCccccc
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTHC 152 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~---~~~~~CP~CR~~~ 152 (481)
+..|.||... ..-+..-.|...|+..|+..-+. .+...||.|....
T Consensus 5 ~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKS-GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCC-SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCcCCCCC-CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4579999864 23333456888999999986554 2446799997643
No 144
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=29.67 E-value=29 Score=28.74 Aligned_cols=45 Identities=18% Similarity=0.525 Sum_probs=30.9
Q ss_pred Ccccccccccccc--cceecccCCCcccHHHHhhhhh---cCCCCCCCcc
Q 011622 105 KDVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMR---LGNNECPACR 149 (481)
Q Consensus 105 ~~l~CpICl~~l~--~Pv~i~~CgH~FC~~CI~~~l~---~~~~~CP~CR 149 (481)
.+..|.||.+.-. +-+....|+..|+..|+...+. .....||.|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3557999976532 2255578999999999987664 2345677764
No 145
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=28.71 E-value=23 Score=32.42 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=30.5
Q ss_pred ccccccccccccceecccCCCcccHHHHhhhhh---cCCCCCCCccccc
Q 011622 107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMR---LGNNECPACRTHC 152 (481)
Q Consensus 107 l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~---~~~~~CP~CR~~~ 152 (481)
..|.+|..-- +-+.+-.|...|+..|+..-+. .+...||.|+..-
T Consensus 3 ~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCCS-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCCC-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 3689998542 2222356888999999976554 3556899998753
No 146
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=28.59 E-value=51 Score=27.41 Aligned_cols=44 Identities=18% Similarity=0.451 Sum_probs=28.9
Q ss_pred ccccccccccc--------ccceecccCCCcccHHHHhh------hhhcCCCCCCCcc
Q 011622 106 DVQCPICLGII--------KKTRTVMECLHRFCRECIDK------SMRLGNNECPACR 149 (481)
Q Consensus 106 ~l~CpICl~~l--------~~Pv~i~~CgH~FC~~CI~~------~l~~~~~~CP~CR 149 (481)
...|.+|+..- ..=+....|+..|+..||.. .+......||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45789997642 12244567999999999953 2233556788875
No 147
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=27.35 E-value=44 Score=25.64 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=34.6
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
+.|.+-.++++.+ .|.+.|+.||..|-+.|+..+.++++..-|+.
T Consensus 13 m~i~vk~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 57 (88)
T 3dbh_I 13 MLIKVKTLTGKEI------EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57 (88)
T ss_dssp EEEEEECTTSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred EEEEEEcCCCCEE------EEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 4444455566654 36788999999999999999999998876654
No 148
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.93 E-value=46 Score=29.37 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=35.1
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.-+.|..|...|..... ..=|..||..|....+. ..|..|...|..
T Consensus 32 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG---TKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHS---CBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCCc-ccCCeeeeccccccccc---ccccccccccCC
Confidence 45889999988876544 45678999999887664 679999887764
No 149
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.03 E-value=19 Score=29.01 Aligned_cols=49 Identities=14% Similarity=0.400 Sum_probs=34.3
Q ss_pred cccccccccccc---cc-eecccCCCcccHHHHhhhhh-------cCCCCCCCccccccC
Q 011622 106 DVQCPICLGIIK---KT-RTVMECLHRFCRECIDKSMR-------LGNNECPACRTHCAS 154 (481)
Q Consensus 106 ~l~CpICl~~l~---~P-v~i~~CgH~FC~~CI~~~l~-------~~~~~CP~CR~~~~~ 154 (481)
...|.||...-. +. +.+-.|...|+..|+..-+. .+...||.|......
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 568999997632 22 33456888999999987553 356789999875543
No 150
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=25.98 E-value=57 Score=26.85 Aligned_cols=45 Identities=7% Similarity=0.220 Sum_probs=35.2
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
+.|.+-.++++.+ .|.+.|+.||..|-+.|+..+.++++..=|+.
T Consensus 36 m~I~Vk~~~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 36 MQIFVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp EEEEEECSSSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEEeCCCCEE------EEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 4444455666654 36788999999999999999999999886664
No 151
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=25.95 E-value=61 Score=24.36 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=35.8
Q ss_pred cccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 372 NDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 372 ~~e~~~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
+.++.|++ -.++++++. |.+.|+.||.+|-+.|+..++++++..=|+.
T Consensus 2 ~~~m~i~V--k~~~g~~~~------~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 2 DEPLSILV--RNNKGRSST------YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp -CCEEEEE--ECTTSCEEE------EEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCEEEEE--EeCCCCEEE------EEECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 34455554 445665542 6888999999999999999999999886653
No 152
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=25.89 E-value=78 Score=25.05 Aligned_cols=42 Identities=7% Similarity=0.189 Sum_probs=33.3
Q ss_pred EEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 380 MLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 380 ~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
.+-.++++.+ .+.+.|+.||..|.+.|+.++.++++..-|+.
T Consensus 4 ~Vk~~~g~~~------~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 4 FVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp EEEETTSCEE------EEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEEeCCCCEE------EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 3334555543 36788999999999999999999999888775
No 153
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=25.26 E-value=38 Score=30.32 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=31.6
Q ss_pred CcccccccccccccceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.-+.|..|...|....+ ..=|..||..|....+. ..|..|..+|..
T Consensus 86 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~---~kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG---TKCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTS---CCCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCce-eECCEeeecCccccccc---cccccCCCccCC
Confidence 34777778777664433 34567788888776554 679999887764
No 154
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=25.15 E-value=27 Score=26.98 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=24.0
Q ss_pred cccccccccccccceecccC-CCcccHHHHhhhh
Q 011622 106 DVQCPICLGIIKKTRTVMEC-LHRFCRECIDKSM 138 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~C-gH~FC~~CI~~~l 138 (481)
.--|.||.+. ..+.++.| +-.||..|....-
T Consensus 8 ~pWC~ICneD--AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 8 LPWCCICNED--ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CSSCTTTCSC--CCEEETTTTSEEECSSHHHHHT
T ss_pred CCeeEEeCCC--CeEEecCCCCceehHHHHHHHc
Confidence 4579999987 33556889 7899999987754
No 155
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=24.59 E-value=26 Score=31.63 Aligned_cols=48 Identities=15% Similarity=0.382 Sum_probs=35.6
Q ss_pred Cccccccccccccc---ceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~---Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.-+.|..|...|.. +.. ..=+..||..|....+. ....|+.|..+|..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~-~~~g~~yC~~cy~~~~~-~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFG-NSGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEE-EETTEEECHHHHHHHHS-CCEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEE-EeCCccccccccccccc-cCCccccCCCcccc
Confidence 35889999988874 443 55678999999887664 11269999998864
No 156
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=24.38 E-value=64 Score=24.85 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=35.6
Q ss_pred ccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 373 DELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 373 ~e~~~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
..+.|++ -.++++.+ .+.+.|+.||.+|-+.|+..+.++++..-|+.
T Consensus 16 ~~m~i~V--k~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 16 DSLEVLV--KTLDSQTR------TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp CEEEEEE--EETTSCEE------EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CeEEEEE--EcCCCCEE------EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 3444444 44566654 36788999999999999999999999886653
No 157
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=24.36 E-value=60 Score=25.89 Aligned_cols=48 Identities=4% Similarity=0.120 Sum_probs=35.6
Q ss_pred cccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 372 NDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 372 ~~e~~~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
+..+.|+++. ++++.+. |.+.|+.||..|-+.|+..+.++++..-|+.
T Consensus 20 ~~~m~I~Vk~--~~g~~~~------l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 67 (98)
T 4hcn_B 20 GRPMQIFVKT--LTGKTIT------LEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 67 (98)
T ss_dssp --CCEEEEEE--TTCCEEE------EECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCeEEEEEEe--CCCCEEE------EEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 3455565544 5666542 6788999999999999999999998886654
No 158
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=24.29 E-value=62 Score=25.26 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=33.9
Q ss_pred EEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 379 LMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 379 l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
|.+-.++++++ .|.+.|+.||..|-+.|+..+.++++..-|+.
T Consensus 3 I~Vk~~~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 3 IKVKTLTGKEI------EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp EEEEETTCCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEcCCCCEE------EEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 33445666665 36889999999999999999999999886654
No 159
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=24.28 E-value=31 Score=31.65 Aligned_cols=46 Identities=17% Similarity=0.332 Sum_probs=30.7
Q ss_pred ccccccccccccc------eecccCCCcccHHHHhhhh------h----cCCCCCCCccccc
Q 011622 107 VQCPICLGIIKKT------RTVMECLHRFCRECIDKSM------R----LGNNECPACRTHC 152 (481)
Q Consensus 107 l~CpICl~~l~~P------v~i~~CgH~FC~~CI~~~l------~----~~~~~CP~CR~~~ 152 (481)
..||||...+... +.+-.|..-|+..|+.--- . .....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4699999887644 2334578888899984321 1 0147899998743
No 160
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=24.07 E-value=70 Score=24.96 Aligned_cols=45 Identities=7% Similarity=0.200 Sum_probs=34.7
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
+.|.+-.++++++ .|.+.|+.||..|-+.|+..++++++..=|+.
T Consensus 18 m~i~Vk~~~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 18 MQIFVNTLTGTHI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp EEEEEECTTSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEEEeCCCCEE------EEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 3344445566654 36788999999999999999999999876654
No 161
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=23.51 E-value=70 Score=27.73 Aligned_cols=44 Identities=25% Similarity=0.516 Sum_probs=29.1
Q ss_pred cccccccccccccceecccCCCcccHHHHhhhh----------hcCCCCCCCccc
Q 011622 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSM----------RLGNNECPACRT 150 (481)
Q Consensus 106 ~l~CpICl~~l~~Pv~i~~CgH~FC~~CI~~~l----------~~~~~~CP~CR~ 150 (481)
+..|.||.+--.-. ..-.|-..||..||.+-+ ......|+.|..
T Consensus 57 ~~~C~vC~dGG~Ll-cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEGGNLI-CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCCSEEE-ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCCCeeE-ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34588887632211 124688999999998652 134578999954
No 162
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=23.38 E-value=83 Score=24.43 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=36.1
Q ss_pred cccceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 372 NDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 372 ~~e~~~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
+..+.|.++ +++++.+ .+.+.|+.||..|.+.|+..++++++..-|+.
T Consensus 2 ~~~m~I~Vk--~~~g~~~------~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 2 DEPLSILVR--NNKGRSS------TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp CCEEEEEEE--ETTSCEE------EEEEESSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred CccEEEEEE--CCCCCEE------EEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 444555444 4555544 36788999999999999999999999887763
No 163
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=22.74 E-value=72 Score=24.69 Aligned_cols=46 Identities=17% Similarity=0.319 Sum_probs=35.1
Q ss_pred cceeEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 374 ELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 374 e~~~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
.|.|+| -.++++++ .|.+.|+.||.+|-+.|+..+.++++..-|+.
T Consensus 5 ~m~i~V--k~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 5 SLEVLV--KTLDSQTR------TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp EEEEEE--EETTCCEE------EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEE--EcCCCCEE------EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 445544 44566554 26788999999999999999999999886654
No 164
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=22.56 E-value=61 Score=24.36 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=36.0
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
+.|.+-.++++.+ .|-+.|+-||..|-+.++.+.+++++..=++.
T Consensus 4 m~i~vk~~~g~~~------~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~ 48 (79)
T 2uyz_B 4 IKLKVIGQDSSEI------HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48 (79)
T ss_dssp EEEEEECTTCCEE------EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEECCCCCEE------EEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 4555666777665 37889999999999999999999998876654
No 165
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.45 E-value=1.3e+02 Score=24.52 Aligned_cols=11 Identities=27% Similarity=0.927 Sum_probs=8.3
Q ss_pred CCCCCcccccc
Q 011622 143 NECPACRTHCA 153 (481)
Q Consensus 143 ~~CP~CR~~~~ 153 (481)
..||+|..++.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 45999988765
No 166
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=21.84 E-value=43 Score=27.95 Aligned_cols=48 Identities=13% Similarity=0.331 Sum_probs=35.0
Q ss_pred Cccccccccccccc---ceecccCCCcccHHHHhhhhhcCCCCCCCccccccC
Q 011622 105 KDVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154 (481)
Q Consensus 105 ~~l~CpICl~~l~~---Pv~i~~CgH~FC~~CI~~~l~~~~~~CP~CR~~~~~ 154 (481)
.-+.|..|...|.. +.. ..=|..||..|....+. ....|..|..+|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~-~~~g~~yC~~~y~~~~~-~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLY-YKLGRKLCRRDYLRLFG-QDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEE-EETTEEECHHHHHHHHC-CCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEE-EECCEEeecCchhhhCC-CccChhhcCCccCc
Confidence 45889999988852 443 55678899999887765 22379999998864
No 167
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=21.65 E-value=45 Score=25.73 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=32.3
Q ss_pred cCccccccccccc----ccceecccCCCcccHHHHhhhhh-cCCCCCCCcccc
Q 011622 104 RKDVQCPICLGII----KKTRTVMECLHRFCRECIDKSMR-LGNNECPACRTH 151 (481)
Q Consensus 104 ~~~l~CpICl~~l----~~Pv~i~~CgH~FC~~CI~~~l~-~~~~~CP~CR~~ 151 (481)
.....|.||...- ..-+..-.|.-.|+..|+..-.. .+...||.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 3466899998653 12233356888999999975432 356789999763
No 168
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.54 E-value=15 Score=29.61 Aligned_cols=11 Identities=27% Similarity=1.111 Sum_probs=6.1
Q ss_pred ccccccccccc
Q 011622 107 VQCPICLGIIK 117 (481)
Q Consensus 107 l~CpICl~~l~ 117 (481)
..||.|...+.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 45666665443
No 169
>1js8_A Hemocyanin; glycoprotein, mollusc, oxygen-transport, thioether bond, OXY storage-transport complex; HET: NDG NAG BMA MAN; 2.30A {Octopus dofleini} SCOP: a.86.1.1 b.112.1.1
Probab=21.53 E-value=40 Score=34.37 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhhhcccccceeEEEEeecCCCCCC--CCCCCcccccC
Q 011622 357 RLNKLVEYLRSLQENNDELDVRLMLVSADTQCAP--SLQQPYLCCQP 401 (481)
Q Consensus 357 ~~~k~~~~l~~~~~~~~e~~~~l~l~~~d~~~~p--~l~~p~l~c~p 401 (481)
-|+++++-|...+ ++.+.|.|.|||.|+..|| .|+.|-|-=.|
T Consensus 345 ~It~~l~~l~~~~--d~~~~v~V~iv~~~g~~~~~~~~~~~~i~~~p 389 (394)
T 1js8_A 345 DITTSLKHLRLDA--HDDFDIKVTIKGIDGHVLSNKYLSPPTVFLAP 389 (394)
T ss_dssp ECHHHHHHTTCCT--TSCEEEEEEEEESSSCEECGGGSCCCEEEEEC
T ss_pred cchHHHHHcCCCc--CCceeEEEEEEecCCCCCcccccCCCeEEEec
Confidence 4788998886553 3678999999999999999 68777665554
No 170
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=21.26 E-value=31 Score=32.84 Aligned_cols=44 Identities=30% Similarity=0.594 Sum_probs=26.6
Q ss_pred ccccccccc--cccceecccCCCcccHHHHhhhhh---cC-CCCCCCccc
Q 011622 107 VQCPICLGI--IKKTRTVMECLHRFCRECIDKSMR---LG-NNECPACRT 150 (481)
Q Consensus 107 l~CpICl~~--l~~Pv~i~~CgH~FC~~CI~~~l~---~~-~~~CP~CR~ 150 (481)
..|.+|... ...-+.+-.|...|+..|+.+-+. .+ ...||.|..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 368888753 122233456888999999986654 23 467999965
No 171
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=21.03 E-value=74 Score=25.36 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=36.8
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
|.|.+..++++.+ .|-+.|+-||..|-+.|+.+.+++++.+=++.
T Consensus 22 m~I~Vk~~~g~~~------~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif 66 (97)
T 1wyw_B 22 IKLKVIGQDSSEI------HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 66 (97)
T ss_dssp EEEEEECTTCCEE------EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEEeCCCCEE------EEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 5566667777766 37899999999999999999999988876655
No 172
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.89 E-value=42 Score=26.36 Aligned_cols=43 Identities=23% Similarity=0.534 Sum_probs=28.6
Q ss_pred ccccccccc--ccceecccCCCcccHHHHhhhhh---cC-CCCCCCccc
Q 011622 108 QCPICLGII--KKTRTVMECLHRFCRECIDKSMR---LG-NNECPACRT 150 (481)
Q Consensus 108 ~CpICl~~l--~~Pv~i~~CgH~FC~~CI~~~l~---~~-~~~CP~CR~ 150 (481)
.|.||...- ..-+..-.|...|+..|+..-+. .+ ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678887532 22233356888999999986554 23 568999964
No 173
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=20.86 E-value=1.2e+02 Score=22.87 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=34.1
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhc---cCCcccceEEEE
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQ---TPLQAEEVEILM 427 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q---~~~~~~e~e~~~ 427 (481)
+.|.+-.++++.+ .+.+-|+.||..|.+.|+.. ++++++..-|+.
T Consensus 6 m~i~vk~~~g~~~------~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~ 53 (85)
T 2wyq_A 6 VTITLKTLQQQTF------KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY 53 (85)
T ss_dssp EEEEEEETTSCEE------EEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE
T ss_pred EEEEEEECCCCEE------EEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE
Confidence 3444445566554 36788999999999999997 789998887764
No 174
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.56 E-value=24 Score=28.62 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=31.3
Q ss_pred Ccccccccccccc--cceecccCCCcccHHHHhhhhh---cCCCCCCCcccc
Q 011622 105 KDVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMR---LGNNECPACRTH 151 (481)
Q Consensus 105 ~~l~CpICl~~l~--~Pv~i~~CgH~FC~~CI~~~l~---~~~~~CP~CR~~ 151 (481)
+...|.||...-. .-+.+-.|...|+..|+..-+. .+...||.|...
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3557999987543 2233346888899999875443 245679999764
No 175
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=20.52 E-value=95 Score=25.37 Aligned_cols=45 Identities=7% Similarity=0.220 Sum_probs=35.1
Q ss_pred eEEEEeecCCCCCCCCCCCcccccCcchHHHHHHHhHhccCCcccceEEEE
Q 011622 377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCEYVSLQTPLQAEEVEILM 427 (481)
Q Consensus 377 ~~l~l~~~d~~~~p~l~~p~l~c~p~~~~~~l~~~va~q~~~~~~e~e~~~ 427 (481)
+.|.+-+++++.+ .+.+.|+.||..|.+.|+.++.++++..-|+.
T Consensus 36 m~I~Vk~~~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 36 MQIFVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp EEEEEECSSSCEE------EEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred EEEEEEcCCCCEE------EEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 4444445566544 37788999999999999999999999887765
No 176
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=20.23 E-value=47 Score=27.09 Aligned_cols=43 Identities=16% Similarity=0.338 Sum_probs=27.3
Q ss_pred ccccccccccccc--eecccCCCcccHHHHhhhhh--cCCCCCCCccc
Q 011622 107 VQCPICLGIIKKT--RTVMECLHRFCRECIDKSMR--LGNNECPACRT 150 (481)
Q Consensus 107 l~CpICl~~l~~P--v~i~~CgH~FC~~CI~~~l~--~~~~~CP~CR~ 150 (481)
..| ||......- +.+-.|..-|+..|+..-.. .....||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 787655433 33345777888888865433 13468999964
No 177
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=20.11 E-value=41 Score=28.15 Aligned_cols=42 Identities=19% Similarity=0.506 Sum_probs=26.4
Q ss_pred cccccccccc---------cceecccCCCcccHHHHhhhh------hcCCCCCCCcc
Q 011622 108 QCPICLGIIK---------KTRTVMECLHRFCRECIDKSM------RLGNNECPACR 149 (481)
Q Consensus 108 ~CpICl~~l~---------~Pv~i~~CgH~FC~~CI~~~l------~~~~~~CP~CR 149 (481)
.|.||+..-. .-+....|+..|+..|+.... ......||.|.
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 5888876431 224456788899999987542 23456677663
Done!